Citrus Sinensis ID: 042941
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 481 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LFQ4 | 572 | Pentatricopeptide repeat- | yes | no | 0.972 | 0.818 | 0.638 | 0.0 | |
| Q9SAH2 | 540 | Pentatricopeptide repeat- | no | no | 0.862 | 0.768 | 0.351 | 3e-73 | |
| Q9LIL5 | 523 | Putative pentatricopeptid | no | no | 0.866 | 0.797 | 0.344 | 6e-66 | |
| Q9M8M3 | 448 | Pentatricopeptide repeat- | no | no | 0.814 | 0.875 | 0.344 | 8e-61 | |
| Q9FH87 | 637 | Putative pentatricopeptid | no | no | 0.837 | 0.632 | 0.298 | 1e-54 | |
| Q9C9A2 | 510 | Pentatricopeptide repeat- | no | no | 0.844 | 0.796 | 0.289 | 3e-53 | |
| P0C8A0 | 638 | Pentatricopeptide repeat- | no | no | 0.854 | 0.644 | 0.287 | 2e-51 | |
| Q9LZP3 | 599 | Pentatricopeptide repeat- | no | no | 0.802 | 0.644 | 0.302 | 8e-51 | |
| Q3EAF8 | 599 | Pentatricopeptide repeat- | no | no | 0.802 | 0.644 | 0.3 | 9e-50 | |
| Q9LEQ7 | 598 | Pentatricopeptide repeat- | no | no | 0.802 | 0.645 | 0.3 | 1e-49 |
| >sp|Q9LFQ4|PP383_ARATH Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/476 (63%), Positives = 375/476 (78%), Gaps = 8/476 (1%)
Query: 7 ILREFSHKRSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTR 66
++++ R E+RNK+EEC +K S+ELV E+LS VRNDWE AFTFF+WAGKQ GY S R
Sbjct: 103 LVKDCGSDRKELRNKLEECDVKPSNELVVEILSRVRNDWETAFTFFVWAGKQQGYVRSVR 162
Query: 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAF 126
EYH+MI+ILGK+RKFDTAW LIDEMR + PSLV QTLLI+IR+YCAVHDVG+AIN F
Sbjct: 163 EYHSMISILGKMRKFDTAWTLIDEMR--KFSPSLVNSQTLLIMIRKYCAVHDVGKAINTF 220
Query: 127 YAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNII 186
+AYKRFK +GI+DFQ LLSALCRYKNV DA HL+FCNKD +PF+ KSFNI+LNGWCN+I
Sbjct: 221 HAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVLNGWCNVI 280
Query: 187 GSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVY 246
GS REAERVWMEM G+ +DVVS+S +ISCYSK +L+KVL+LFD+MK+ IE DRKVY
Sbjct: 281 GSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVY 340
Query: 247 NAVIHALAKGRLVKDAISLMKSM-EEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEML 305
NAV+HALAK V +A +LMK+M EEKG+ PNVVTYNSLIKPLCKARK +EA+Q FDEML
Sbjct: 341 NAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEML 400
Query: 306 QRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVF 365
++G+ PTIRTYHAF+ I+RTGEEVF LL MRKMGC+PT +TYIMLI+K RWR F NV
Sbjct: 401 EKGLFPTIRTYHAFMRILRTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVL 460
Query: 366 KVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWS 425
+W+E+ E GPD SSY +IH LFLNGK+EEA+ YY EMK+K + P ++++Q W
Sbjct: 461 LLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMRPNENVEDMIQSWF 520
Query: 426 YNKQFVERQIASLKAHQPQSGQNTRVISKKSDQDREFLQQPETRRVVRHQGFSFWE 481
KQ+ E++I K N I KKS++++ FLQQPE R+VVR G+SFW+
Sbjct: 521 SGKQYAEQRITDSKGE-----VNKGAIVKKSEREKNFLQQPEVRKVVREHGYSFWD 571
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SAH2|PP137_ARATH Pentatricopeptide repeat-containing protein At1g80880, mitochondrial OS=Arabidopsis thaliana GN=At1g80880 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 276 bits (706), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 239/424 (56%), Gaps = 9/424 (2%)
Query: 2 KTLVDILREFSHKRSEMRN--KIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQS 59
K L+D++R+ S SE +E+ ++ + ++ +R++W AF F W K+
Sbjct: 92 KGLIDLIRQVSELESEADAMASLEDSSFDLNHDSFYSLIWELRDEWRLAFLAFKWGEKRG 151
Query: 60 GYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDV 119
+ MI +LG +KF+ AW LI +M S T++ + +++ RY A +D
Sbjct: 152 --CDDQKSCDLMIWVLGNHQKFNIAWCLIRDM----FNVSKDTRKAMFLMMDRYAAANDT 205
Query: 120 GRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIIL 179
+AI F +FK E FQGLL ALCR+ +++ AE M +K +FP + + FN+IL
Sbjct: 206 SQAIRTFDIMDKFKHTPYDEAFQGLLCALCRHGHIEKAEEFMLASKKLFPVDVEGFNVIL 265
Query: 180 NGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGI 239
NGWCNI EA+R+W EM I + S+S +ISC+SK NL LRL+D+MK+ G+
Sbjct: 266 NGWCNIWTDVTEAKRIWREMGNYCITPNKDSYSHMISCFSKVGNLFDSLRLYDEMKKRGL 325
Query: 240 ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQ 299
+VYN++++ L + +A+ LMK + E+G+ P+ VTYNS+I+PLC+A KLD AR
Sbjct: 326 APGIEVYNSLVYVLTREDCFDEAMKLMKKLNEEGLKPDSVTYNSMIRPLCEAGKLDVARN 385
Query: 300 AFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWR 359
M+ +SPT+ T+HAFL+ + E+ +L M+ PT +T+++++ K + +
Sbjct: 386 VLATMISENLSPTVDTFHAFLEAVNF-EKTLEVLGQMKISDLGPTEETFLLILGKLFKGK 444
Query: 360 QFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDE 419
Q N K+W E+ + + Y A I L G LE+A + Y EMK K + P +
Sbjct: 445 QPENALKIWAEMDRFEIVANPALYLATIQGLLSCGWLEKAREIYSEMKSKGFVGNPMLQK 504
Query: 420 LLQD 423
LL++
Sbjct: 505 LLEE 508
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LIL5|PP233_ARATH Putative pentatricopeptide repeat-containing protein At3g15200 OS=Arabidopsis thaliana GN=At3g15200 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 252 bits (643), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 147/427 (34%), Positives = 236/427 (55%), Gaps = 10/427 (2%)
Query: 2 KTLVDILREFSHKRSEMRNKI----EECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGK 57
++ +D+ H R KI ++CGI ++ ELV EV++ R+DW+ A+ K
Sbjct: 76 QSALDVHNIIKHHRGSSPEKIKRILDKCGIDLTEELVLEVVNRNRSDWKPAYILSQLVVK 135
Query: 58 QSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH 117
QS + S+ Y+ ++ +LGK+R+F+ + DEM + V ++T +L+ RY A H
Sbjct: 136 QSVHLSSSMLYNEILDVLGKMRRFEEFHQVFDEMSKRD---GFVNEKTYEVLLNRYAAAH 192
Query: 118 DVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNI 177
V A+ F K F + F GLL LCRYK+V+ AE L + F + K+ N+
Sbjct: 193 KVDEAVGVFERRKEFGIDDDLVAFHGLLMWLCRYKHVEFAETLFCSRRREFGCDIKAMNM 252
Query: 178 ILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM 237
ILNGWC ++G+ EA+R W ++ DVVS+ +I+ +K L K + L+ M
Sbjct: 253 ILNGWC-VLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELYRAMWDT 311
Query: 238 GIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEA 297
D K+ N VI AL + + +A+ + + + EKG PNVVTYNSL+K LCK R+ ++
Sbjct: 312 RRNPDVKICNNVIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCKIRRTEKV 371
Query: 298 RQAFDEMLQRG--ISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKF 355
+ +EM +G SP T+ L + ++V +LE M K C+ T+D Y ++ + +
Sbjct: 372 WELVEEMELKGGSCSPNDVTFSYLLKYSQRSKDVDIVLERMAKNKCEMTSDLYNLMFRLY 431
Query: 356 SRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEP 415
+W + V ++W+E+ +G GPD+ +YT IH L GK+ EA Y+ EM K ++PEP
Sbjct: 432 VQWDKEEKVREIWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSKGMVPEP 491
Query: 416 KTDELLQ 422
+T+ LL
Sbjct: 492 RTEMLLN 498
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M8M3|PP136_ARATH Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (598), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 139/404 (34%), Positives = 215/404 (53%), Gaps = 12/404 (2%)
Query: 16 SEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAIL 75
++ R++ EE + V E L+ NDW+ A FF W ++SG+ H+T ++ +I IL
Sbjct: 32 AKFRSQEEEDQSSYDQKTVCEALTCYSNDWQKALEFFNWVERESGFRHTTETFNRVIDIL 91
Query: 76 GKVRKFDTAWALIDEMRGG-ETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKF 134
GK +F+ +WALI+ M G E+ P+ VT I+ +RY H V AI+A+ F
Sbjct: 92 GKYFEFEISWALINRMIGNTESVPNHVT---FRIVFKRYVTAHLVQEAIDAYDKLDDFNL 148
Query: 135 AVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFP-----FNTKSFNIILNGWCNIIGSS 189
F L+ ALC +K+V +AE L F K+V NTK N+IL GW + G
Sbjct: 149 R-DETSFYNLVDALCEHKHVVEAEELCF-GKNVIGNGFSVSNTKIHNLILRGWSKL-GWW 205
Query: 190 REAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAV 249
+ + W +M G+ D+ S+S + K+ K ++L+ +MK ++ D YN V
Sbjct: 206 GKCKEYWKKMDTEGVTKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRRMKLDVVAYNTV 265
Query: 250 IHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGI 309
I A+ + V+ I + + M E+G PNV T+N++IK LC+ ++ +A + DEM +RG
Sbjct: 266 IRAIGASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKRGC 325
Query: 310 SPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWN 369
P TY + E+ L M + G +P DTY+ML++KF RW V VW
Sbjct: 326 QPDSITYMCLFSRLEKPSEILSLFGRMIRSGVRPKMDTYVMLMRKFERWGFLQPVLYVWK 385
Query: 370 EISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLP 413
+ E+G+ PD ++Y A+I AL G L+ A +Y EM E+ L P
Sbjct: 386 TMKESGDTPDSAAYNAVIDALIQKGMLDMAREYEEEMIERGLSP 429
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (545), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/409 (29%), Positives = 211/409 (51%), Gaps = 6/409 (1%)
Query: 7 ILREFSHKRSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTR 66
ILR+F + ++ + E G+++ L+ VL+ + + FF+WA KQ Y HS
Sbjct: 89 ILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIE 148
Query: 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAF 126
Y +M+ IL K+R+F W LI+EMR + P L+ + ++L++R+ + V +AI
Sbjct: 149 VYKSMVKILSKMRQFGAVWGLIEEMR--KENPQLIEPELFVVLVQRFASADMVKKAIEVL 206
Query: 127 YAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNII 186
+F F F LL ALC++ +V+DA L + FP N + F +L GWC +
Sbjct: 207 DEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYFTSLLYGWCRV- 265
Query: 187 GSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVY 246
G EA+ V ++M++ G D+V ++ ++S Y+ A + L M+R G E + Y
Sbjct: 266 GKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCY 325
Query: 247 NAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQ 306
+I AL K +++A+ + ME +VVTY +L+ CK K+D+ D+M++
Sbjct: 326 TVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIK 385
Query: 307 RGISPTIRTYHAFL---DIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGN 363
+G+ P+ TY + + + EE L+E MR++ P Y ++I+ + +
Sbjct: 386 KGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKE 445
Query: 364 VFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLL 412
++WNE+ ENG P ++ +I+ L G L EA ++ EM + L
Sbjct: 446 AVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRGLF 494
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (533), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 120/414 (28%), Positives = 215/414 (51%), Gaps = 8/414 (1%)
Query: 1 AKTLVDILREFSHKRSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSG 60
A+ + IL +F+ S++ + E +K+S L+ EVL + N A + F WA Q G
Sbjct: 66 AERICKILTKFTD--SKVETLLNEASVKLSPALIEEVLKKLSNAGVLALSVFKWAENQKG 123
Query: 61 YAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVG 120
+ H+T Y+ +I LGK+++F W+L+D+M+ + L++K+T ++ RRY V
Sbjct: 124 FKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKK----LLSKETFALISRRYARARKVK 179
Query: 121 RAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM-FCNKDVFPFNTKSFNIIL 179
AI AF+ + F F + DF +L L + +NV DA+ + K F + KS+ I+L
Sbjct: 180 EAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILL 239
Query: 180 NGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGI 239
GW + R + V EM G DVV++ II+ + KA+ + +R F++M++
Sbjct: 240 EGWGQELNLLR-VDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNC 298
Query: 240 ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQ 299
+ ++ ++I+ L + + DA+ + + G TYN+L+ C ++++++A +
Sbjct: 299 KPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYK 358
Query: 300 AFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWR 359
DEM +G+ P RTY L + + E + M C+PT TY ++++ F
Sbjct: 359 TVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMSCEPTVSTYEIMVRMFCNKE 418
Query: 360 QFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLP 413
+ K+W+E+ G P +++LI AL KL+EA +Y+ EM + + P
Sbjct: 419 RLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRP 472
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/418 (28%), Positives = 209/418 (50%), Gaps = 7/418 (1%)
Query: 7 ILREFSHKRSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTR 66
ILR + ++ + E GI + L+ VLS + + FFLWA KQ GY HS
Sbjct: 73 ILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLWATKQPGYFHSYE 132
Query: 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAF 126
+M+ IL K+R+F W LI+EMR +T P L+ + ++L+RR+ + + V +A+
Sbjct: 133 VCKSMVMILSKMRQFGAVWGLIEEMR--KTNPELIEPELFVVLMRRFASANMVKKAVEVL 190
Query: 127 YAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNII 186
++ F LL ALC+ +V++A + ++ FP N + F +L GWC
Sbjct: 191 DEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYGWCR-E 249
Query: 187 GSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVY 246
G EA+ V ++M + G+ D+V F+ ++S Y+ A + L + M++ G E + Y
Sbjct: 250 GKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCY 309
Query: 247 NAVIHALAKG-RLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEML 305
+I AL + + + +A+ + ME G ++VTY +LI CK +D+ D+M
Sbjct: 310 TVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMR 369
Query: 306 QRGISPTIRTYHAFL---DIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFG 362
++G+ P+ TY + + EE L+E M++ GC P Y ++I+ + +
Sbjct: 370 KKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVK 429
Query: 363 NVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDEL 420
++WNE+ NG P ++ +I+ G L EA ++ EM + + P+ L
Sbjct: 430 EAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTL 487
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 201 bits (512), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 121/400 (30%), Positives = 211/400 (52%), Gaps = 14/400 (3%)
Query: 18 MRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGK 77
M ++E + +S +L+ EVL R+ + AF FF WA ++ G+AH +R Y++M++IL K
Sbjct: 148 MEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAK 207
Query: 78 VRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG 137
R+F+T ++++EM G G L+T +T I ++ + A + +A+ F K++KF +G
Sbjct: 208 TRQFETMVSVLEEM--GTKG--LLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIG 263
Query: 138 IEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWC---NIIGSSREAER 194
+E LL +L R K ++A+ L K+ F N ++ ++LNGWC N+I EA R
Sbjct: 264 VETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLI----EAAR 319
Query: 195 VWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALA 254
+W +M +G+ D+V+ + ++ ++R ++LF MK G + + Y +I
Sbjct: 320 IWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFC 379
Query: 255 KGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIR 314
K ++ AI M + G+ P+ Y LI +KLD + EM ++G P +
Sbjct: 380 KQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGK 439
Query: 315 TYHAFLDII---RTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEI 371
TY+A + ++ + E + M + +P+ T+ M++K + R + VW E+
Sbjct: 440 TYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEM 499
Query: 372 SENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQL 411
+ G PD +SYT LI L GK EA +Y EM +K +
Sbjct: 500 IKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGM 539
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 198 bits (503), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 120/400 (30%), Positives = 211/400 (52%), Gaps = 14/400 (3%)
Query: 18 MRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGK 77
M ++E + +S +L+ EVL R+ + AF FF WA ++ G+AH++R Y++M++IL K
Sbjct: 148 MEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHASRTYNSMMSILAK 207
Query: 78 VRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG 137
R+F+T ++++EM G G L+T +T I ++ + A + +A+ F K++KF +G
Sbjct: 208 TRQFETMVSVLEEM--GTKG--LLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIG 263
Query: 138 IEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWC---NIIGSSREAER 194
+E LL +L R K ++A+ L K+ F N ++ ++LNGWC N+I EA R
Sbjct: 264 VETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLI----EAAR 319
Query: 195 VWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALA 254
+W +M G+ D+V+ + ++ ++ ++LF MK G + + Y +I
Sbjct: 320 IWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFC 379
Query: 255 KGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIR 314
K ++ AI M + G+ P+ Y LI +KLD + EM ++G P +
Sbjct: 380 KQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGK 439
Query: 315 TYHAFLDII---RTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEI 371
TY+A + ++ + E + M + +P+ T+ M++K + R + VW+E+
Sbjct: 440 TYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEM 499
Query: 372 SENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQL 411
+ G PD +SYT LI L GK EA +Y EM +K +
Sbjct: 500 IKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGM 539
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 197 bits (501), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/400 (30%), Positives = 210/400 (52%), Gaps = 14/400 (3%)
Query: 18 MRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGK 77
M ++E + +S +L+ EVL R+ + AF FF WA ++ G+AH +R Y++M++IL K
Sbjct: 147 MEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAK 206
Query: 78 VRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG 137
R+F+T ++++EM G G L+T +T I ++ + A + +A+ F K++KF +G
Sbjct: 207 TRQFETMVSVLEEM--GTKG--LLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIG 262
Query: 138 IEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWC---NIIGSSREAER 194
+E LL +L R K ++A+ L K+ F N ++ ++LNGWC N+I EA R
Sbjct: 263 VETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLI----EAAR 318
Query: 195 VWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALA 254
+W +M G+ D+V+ + ++ ++ ++LF MK G + + Y +I
Sbjct: 319 IWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFC 378
Query: 255 KGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIR 314
K ++ AI M + G+ P+ Y LI +KLD + EM ++G P +
Sbjct: 379 KQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGK 438
Query: 315 TYHAFLDII---RTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEI 371
TY+A + ++ + E + M + +P+ T+ M++K + R + VW+E+
Sbjct: 439 TYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEM 498
Query: 372 SENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQL 411
+ G PD +SYT LI L GK EA +Y EM +K +
Sbjct: 499 IKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGM 538
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 481 | ||||||
| 224123678 | 518 | predicted protein [Populus trichocarpa] | 0.997 | 0.926 | 0.714 | 0.0 | |
| 255568998 | 581 | pentatricopeptide repeat-containing prot | 0.993 | 0.822 | 0.715 | 0.0 | |
| 225436259 | 566 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.849 | 0.685 | 0.0 | |
| 449431996 | 485 | PREDICTED: pentatricopeptide repeat-cont | 0.977 | 0.969 | 0.672 | 0.0 | |
| 297807523 | 524 | pentatricopeptide repeat-containing prot | 0.987 | 0.906 | 0.654 | 0.0 | |
| 356570295 | 516 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.932 | 0.640 | 0.0 | |
| 357508583 | 585 | Pentatricopeptide repeat-containing prot | 1.0 | 0.822 | 0.623 | 0.0 | |
| 356560394 | 612 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.785 | 0.640 | 0.0 | |
| 9755668 | 532 | putative protein [Arabidopsis thaliana] | 0.972 | 0.879 | 0.638 | 0.0 | |
| 334187687 | 572 | pentatricopeptide repeat-containing prot | 0.972 | 0.818 | 0.638 | 0.0 |
| >gi|224123678|ref|XP_002319139.1| predicted protein [Populus trichocarpa] gi|222857515|gb|EEE95062.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/494 (71%), Positives = 413/494 (83%), Gaps = 14/494 (2%)
Query: 1 AKTLVDILREFSHKRSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSG 60
AKT+V+IL+E R EM++KIE+CGIKVS ELV EVLS VRNDWEAAFTFFLWA +Q G
Sbjct: 25 AKTIVNILQESCDNRVEMKSKIEQCGIKVSQELVLEVLSRVRNDWEAAFTFFLWAARQPG 84
Query: 61 YAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVG 120
YAHS REYH+MI+ILGK+RKFDTAW LIDEMRG +TG SLVT QTLLI+IR+YCAVHDVG
Sbjct: 85 YAHSVREYHSMISILGKMRKFDTAWVLIDEMRGVKTGVSLVTPQTLLIMIRKYCAVHDVG 144
Query: 121 RAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILN 180
RAIN FYAYKRFKF +GIE+FQ LLSALCRYKNVQDAE LM+CNK VFP NTKSFNI+LN
Sbjct: 145 RAINTFYAYKRFKFDMGIEEFQSLLSALCRYKNVQDAEQLMYCNKAVFPLNTKSFNIVLN 204
Query: 181 GWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIE 240
GWCN+IGS RE+ERVW EMS+RGI +DVVS++ ++SCYSKA +L++VLRL+ QMK++GIE
Sbjct: 205 GWCNLIGSPRESERVWREMSKRGIRFDVVSYASMMSCYSKAGSLYRVLRLYKQMKKIGIE 264
Query: 241 CDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQA 300
DRKVYNAVIHALAKGRLV +A +LMK+MEEKGVAPN+VTYNSLIKPLC+ARK++EA+ A
Sbjct: 265 PDRKVYNAVIHALAKGRLVNEAFNLMKTMEEKGVAPNIVTYNSLIKPLCRARKVEEAKGA 324
Query: 301 FDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQ 360
FD+ML+R ISPTIRTYHAFL I+RTGEEVF LLE MRKMGCQP NDTYIMLI+KF RWRQ
Sbjct: 325 FDDMLKRCISPTIRTYHAFLRILRTGEEVFALLEKMRKMGCQPINDTYIMLIRKFCRWRQ 384
Query: 361 FGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDEL 420
NVFK+W+E+SENG PDRSSY LIH LFLNG+L+ AH+YY EMKEKQLLPEPK DE+
Sbjct: 385 LENVFKLWDEMSENGISPDRSSYIVLIHGLFLNGELDAAHKYYTEMKEKQLLPEPKIDEM 444
Query: 421 LQDWSYNKQFVERQIASLKAHQ-------------PQSGQNTRVISKKSDQDREFLQQPE 467
LQ W NKQ E Q +++Q QS + TR I K+S +R F++Q E
Sbjct: 445 LQTWLSNKQIAEGQTTESRSNQCQTTELRSNQLDCSQSREQTRGIPKRS-HERNFIRQAE 503
Query: 468 TRRVVRHQGFSFWE 481
TR+VVR +G SFWE
Sbjct: 504 TRKVVRERGISFWE 517
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568998|ref|XP_002525469.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223535282|gb|EEF36959.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/481 (71%), Positives = 403/481 (83%), Gaps = 3/481 (0%)
Query: 4 LVDILREFSHKRSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAH 63
++ IL + S EM+NKIE CG+KVS ELV EVLS +RNDWEAAFTFFLWAG+Q GY+H
Sbjct: 100 IMSILHQLSGNPVEMKNKIEHCGVKVSRELVLEVLSRIRNDWEAAFTFFLWAGRQLGYSH 159
Query: 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAI 123
S REYH MI+ILGK+RKFDTAWALIDEMRG +TG SLVT QTLLI+IR+YCAVHDVGRAI
Sbjct: 160 SVREYHAMISILGKMRKFDTAWALIDEMRGVKTGISLVTPQTLLIMIRKYCAVHDVGRAI 219
Query: 124 NAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWC 183
N FYA+KRFKF +GI++FQ LLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNI+LNGWC
Sbjct: 220 NTFYAHKRFKFDLGIDEFQSLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIVLNGWC 279
Query: 184 NIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDR 243
N+IGS REA+R+W EM +R I YDVVS++ IISCYSKA NL+KV +L++QMK +GIE DR
Sbjct: 280 NVIGSPREADRIWREMCKRRIHYDVVSYASIISCYSKAGNLYKVFKLYNQMKEVGIEPDR 339
Query: 244 KVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDE 303
K+YN+VI ALAKGR V +AI+LMK+MEEKG+APN VTYNSLIKPLC+ARK+DEAR FDE
Sbjct: 340 KIYNSVIFALAKGRHVSEAINLMKTMEEKGIAPNTVTYNSLIKPLCRARKIDEARGLFDE 399
Query: 304 MLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGN 363
MLQ G SPTIRTYHAF +RTGEEVF LLE+MRK+GC PT DTYIMLI+KF RWRQF +
Sbjct: 400 MLQHGHSPTIRTYHAFFRSLRTGEEVFALLENMRKLGCHPTIDTYIMLIRKFCRWRQFDD 459
Query: 364 VFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQD 423
VFK+WN+ISENG GPDRSSY LIH LFLNGKLEEA+++Y +MKEKQLLP+PK DE+LQ
Sbjct: 460 VFKLWNQISENGLGPDRSSYIVLIHGLFLNGKLEEAYKFYADMKEKQLLPDPKLDEMLQT 519
Query: 424 WSYNKQFVERQIASLKAHQ---PQSGQNTRVISKKSDQDREFLQQPETRRVVRHQGFSFW 480
W NKQ E Q+ K Q + G R SK+ + +++FLQQ E RRVVR +GFSFW
Sbjct: 520 WLSNKQVAECQMTESKVDQLDCSRLGNQRRATSKRINHEKDFLQQAEIRRVVRERGFSFW 579
Query: 481 E 481
+
Sbjct: 580 K 580
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225436259|ref|XP_002275952.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/484 (68%), Positives = 397/484 (82%), Gaps = 3/484 (0%)
Query: 1 AKTLVDILREFSHKRSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSG 60
+ +VDIL+E S +++K+E CG+ SSELV EVLS VRN WEAAFTFFLWA KQ G
Sbjct: 83 VRRIVDILQEPGSSMSLVKHKLESCGVAASSELVVEVLSRVRNHWEAAFTFFLWAAKQPG 142
Query: 61 YAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVG 120
YAHS R YH+MI+ILGK+RKFDTAWALIDEMRGG TG SLVT TL I+IRRYCAVHDVG
Sbjct: 143 YAHSLRAYHSMISILGKMRKFDTAWALIDEMRGGRTGTSLVTPHTLSIMIRRYCAVHDVG 202
Query: 121 RAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILN 180
+AIN FYA+K+FKF VGIE+FQ LLSALCRYKNVQDAE L+FCN++VFPF+TKSFNIILN
Sbjct: 203 KAINTFYAHKQFKFGVGIEEFQNLLSALCRYKNVQDAEQLLFCNRNVFPFDTKSFNIILN 262
Query: 181 GWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIE 240
GWCN+IGS REAER W EMS RGI DVVS+S IISCYSK NL+KVL+LF+QMK M I
Sbjct: 263 GWCNVIGSMREAERFWREMSNRGIQRDVVSYSSIISCYSKVTNLNKVLKLFNQMKEMEIA 322
Query: 241 CDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQA 300
DRKVYNAV+HALAK VK+A++LMK+ME KG+AP+ VTYNSLIKPL +ARK++EA++
Sbjct: 323 PDRKVYNAVVHALAKASFVKEALNLMKAMEGKGIAPDSVTYNSLIKPLSRARKINEAKEV 382
Query: 301 FDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQ 360
FDEMLQRG+SPTIRTYHAF I+++GEEVF LLE M++ GC P DTYIMLI++F RWRQ
Sbjct: 383 FDEMLQRGLSPTIRTYHAFFRILKSGEEVFMLLEKMKETGCHPDKDTYIMLIRRFCRWRQ 442
Query: 361 FGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDEL 420
NVFK+W+E+SENG GPDRSSY LIH LFLNGKLEEA++YY+EMKEKQ LPEPKT+++
Sbjct: 443 LDNVFKLWSEMSENGVGPDRSSYIVLIHGLFLNGKLEEAYKYYIEMKEKQFLPEPKTEDM 502
Query: 421 LQDWSYNKQFVERQIASLKAHQPQSGQNTR---VISKKSDQDREFLQQPETRRVVRHQGF 477
LQ W K+ + ++ LK +Q GQ+++ V SK D R+F QQPETR+V R +GF
Sbjct: 503 LQAWISGKETADVRMIDLKDNQSDHGQSSKKTLVTSKNVDLGRDFRQQPETRKVTRERGF 562
Query: 478 SFWE 481
SFWE
Sbjct: 563 SFWE 566
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449431996|ref|XP_004133786.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like [Cucumis sativus] gi|449477985|ref|XP_004155184.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/480 (67%), Positives = 385/480 (80%), Gaps = 10/480 (2%)
Query: 3 TLVDILREF-SHKRSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGY 61
++DI R F R ++RNK+E C IKVS ELV VLS +RNDWEAAFTFF+WAGKQ GY
Sbjct: 14 AIMDIFRGFRDANRIQVRNKLEHCFIKVSGELVVAVLSRIRNDWEAAFTFFVWAGKQPGY 73
Query: 62 AHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121
AHS REYH+MI+ILGK+RKFDTAWALIDEMRGG G SLVT QTLLI+IRRYCAVHDV +
Sbjct: 74 AHSVREYHSMISILGKMRKFDTAWALIDEMRGGTPGSSLVTPQTLLIMIRRYCAVHDVAK 133
Query: 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNG 181
AIN FYA+KRF F +G+E+FQ LLSALCRYKNV+DAE+L+FCNKDVFPFNTKSFNIILNG
Sbjct: 134 AINTFYAHKRFGFNIGLEEFQSLLSALCRYKNVKDAEYLLFCNKDVFPFNTKSFNIILNG 193
Query: 182 WCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIEC 241
WC +IGS R+ ERVW EM++RGI +D VS++ ISCYSK RNLHKVLRLF+ MKRM I+
Sbjct: 194 WC-VIGSLRDTERVWKEMTRRGISHDAVSYASCISCYSKVRNLHKVLRLFEDMKRMKIDP 252
Query: 242 DRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAF 301
DRKVYNAVIH+LAKGR +K+A L+K+MEEKG+ NVVTYNS+IKPLCKAR+ DEAR F
Sbjct: 253 DRKVYNAVIHSLAKGRCLKEAADLIKTMEEKGIIANVVTYNSVIKPLCKARRFDEARAVF 312
Query: 302 DEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQF 361
+E+LQRG+ PTI+TYHAFL +RT EE+F LL+ MR MGC PT DTYIMLI+KF RWRQ
Sbjct: 313 EELLQRGLCPTIQTYHAFLRFLRTEEEIFELLKKMRTMGCNPTTDTYIMLIRKFCRWRQL 372
Query: 362 GNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELL 421
NV ++W+E+SENG PDRSSY LIH LFLNGKLE+AH+YY+EMKEK LLPEPK DE+L
Sbjct: 373 DNVSRIWHEMSENGISPDRSSYIVLIHGLFLNGKLEDAHKYYLEMKEKDLLPEPKIDEVL 432
Query: 422 QDWSYNKQFVERQIASLKAHQPQSGQNTRVISKKSDQDREFLQQPETRRVVRHQGFSFWE 481
Q W K + + G+N+ + K+D F +QPE R+V RH+GFSFW+
Sbjct: 433 QTWLAGKSVFQENPSDCSG----EGKNSSLFPNKND----FHRQPEIRKVSRHRGFSFWK 484
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297807523|ref|XP_002871645.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297317482|gb|EFH47904.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/480 (65%), Positives = 381/480 (79%), Gaps = 5/480 (1%)
Query: 3 TLVDILREFSHKRSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYA 62
T+V +L+ R E+RNK+EEC +K S+ELV E+LS VRNDWE AFTFF+WAGKQ GY
Sbjct: 48 TIVKLLKNCGSDRKELRNKLEECDVKPSNELVVEILSQVRNDWETAFTFFVWAGKQQGYV 107
Query: 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRA 122
S REYH+MI+ILGK+RKFDTAW LIDEMR + PSLV QTLLI+IR+YCAVHDVG+A
Sbjct: 108 RSVREYHSMISILGKMRKFDTAWTLIDEMR--KFSPSLVNSQTLLIMIRKYCAVHDVGKA 165
Query: 123 INAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGW 182
IN F+AYKRFK +GI+DFQ LLSALCRYKNV DAEHL+FCNKD +PF+ KSFNI+LNGW
Sbjct: 166 INTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAEHLIFCNKDTYPFDAKSFNIVLNGW 225
Query: 183 CNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECD 242
CN+IGS REAERVWMEM G+ +DVVS+S +ISCYSK +L+KVL+LFD+MK+ IE D
Sbjct: 226 CNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKESIEPD 285
Query: 243 RKVYNAVIHALAKGRLVKDAISLMKSM-EEKGVAPNVVTYNSLIKPLCKARKLDEARQAF 301
RKVYNAVIHALAK V +A +LMK+M EEKG+ PNVVTYNSLIKPLCKARK +EA+Q F
Sbjct: 286 RKVYNAVIHALAKASFVSEARNLMKTMEEEKGMEPNVVTYNSLIKPLCKARKTEEAKQVF 345
Query: 302 DEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQF 361
DEML++G+ PTIRTYHAF+ I+RTGEEVF LL MRKMGCQPT DTYIMLI+K RWR F
Sbjct: 346 DEMLEKGLFPTIRTYHAFMRILRTGEEVFELLAKMRKMGCQPTVDTYIMLIRKLCRWRDF 405
Query: 362 GNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELL 421
NV +WNE+ E G GPD SSY +IH LFLNGK+EEA+ YY EMKEK + P ++++
Sbjct: 406 DNVLLLWNEMKEKGVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKEKGMRPNENVEDMI 465
Query: 422 QDWSYNKQFVERQIASLKAHQPQSGQNTRVISKKSDQDREFLQQPETRRVVRHQGFSFWE 481
Q W KQ+ E+++ K SG + I KKS++++ FLQQPE R+VVR G+SFW+
Sbjct: 466 QSWFSGKQYAEQRVIDSKGD--VSGVDKGGIVKKSEREKNFLQQPEVRKVVRGHGYSFWD 523
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356570295|ref|XP_003553325.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/484 (64%), Positives = 388/484 (80%), Gaps = 3/484 (0%)
Query: 1 AKTLVDILREFSHKRSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSG 60
KT++DI+ E S+ + K+E C + +S++LV EVL RNDWEAAFTFFLWAGKQ G
Sbjct: 32 VKTILDIMHEMGSGPSQTKQKLEHCSVDLSAKLVVEVLLRTRNDWEAAFTFFLWAGKQPG 91
Query: 61 YAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVG 120
YAHS REYH+MI+ILGK+RKFDTAW LI+EMR G TGPSLVT QTLLI+IR+YCAVHDV
Sbjct: 92 YAHSIREYHSMISILGKMRKFDTAWNLIEEMRRGRTGPSLVTPQTLLIMIRKYCAVHDVA 151
Query: 121 RAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILN 180
RAIN FYAYK+F F VG+E+F LLSALCRYKNVQDAEHL+FCNK++FP +TKSFNIILN
Sbjct: 152 RAINTFYAYKQFNFQVGLEEFHSLLSALCRYKNVQDAEHLLFCNKNLFPLDTKSFNIILN 211
Query: 181 GWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIE 240
GWCN+I S+ AER+W EMS+R I +DVVS+ IISCYSK+ L+KVLR+FD+MK+ I
Sbjct: 212 GWCNLIVSTSHAERIWHEMSKRRIQHDVVSYGSIISCYSKSSKLYKVLRMFDEMKKRKIT 271
Query: 241 CDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQA 300
DRKVYNAVI+ALAKGRLVK+A++L+ ++E+ V PNVVTYNSLIKPLCKA K+DEA+Q
Sbjct: 272 PDRKVYNAVIYALAKGRLVKEAVNLIGTLEDNDVTPNVVTYNSLIKPLCKAGKVDEAKQL 331
Query: 301 FDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQ 360
F E+L+R +SPTI+T+HAF I+RT EEVF LL+ M+++GC PT +TYIML++KF RWRQ
Sbjct: 332 FYEILKRHLSPTIQTFHAFFRILRTKEEVFELLDKMKELGCYPTIETYIMLMRKFCRWRQ 391
Query: 361 FGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDEL 420
+VFK+W+ + E+G G DRSSY LIH LFLNGKLEEAH YY EM+EK LPEPKT+E+
Sbjct: 392 LDDVFKMWDAMREDGIGHDRSSYIVLIHGLFLNGKLEEAHTYYAEMQEKGFLPEPKTEEM 451
Query: 421 LQDWSYNKQFVERQIASLKAHQPQSG---QNTRVISKKSDQDREFLQQPETRRVVRHQGF 477
LQ W KQ E Q +L+ +Q ++ + + I K D+++ FL++PETRRV R +GF
Sbjct: 452 LQAWVSGKQATEGQETNLEPNQLENDTLKKKVKAIPSKFDREKAFLREPETRRVTRERGF 511
Query: 478 SFWE 481
SFWE
Sbjct: 512 SFWE 515
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357508583|ref|XP_003624580.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355499595|gb|AES80798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/484 (62%), Positives = 389/484 (80%), Gaps = 3/484 (0%)
Query: 1 AKTLVDILREFSHKRSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSG 60
KT++DI+ + E++ K+E+C +K SSELV EVLS VRNDWEAAFTFFLWAGKQ G
Sbjct: 101 VKTILDIIHKPGSGPYEIKQKLEDCNVKASSELVVEVLSRVRNDWEAAFTFFLWAGKQPG 160
Query: 61 YAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVG 120
Y HS REYH+MI++LGK+R+FDTAWAL++EMR G+TG S+VT QTLLI+IR+YCAVHDVG
Sbjct: 161 YDHSVREYHSMISVLGKMRRFDTAWALVEEMRRGKTGESIVTPQTLLIMIRKYCAVHDVG 220
Query: 121 RAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILN 180
RAIN FYA+KRF F VG+ +FQGLLSALCRYKNVQDAEHL+FCNK+VFP +TKSFNIILN
Sbjct: 221 RAINTFYAFKRFNFQVGLYEFQGLLSALCRYKNVQDAEHLLFCNKNVFPLDTKSFNIILN 280
Query: 181 GWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIE 240
GWCN+I S+R AER+W EMS+R I +DVVS++ IISCYSK+ L++VL+LF+QMK+ I
Sbjct: 281 GWCNLIVSARNAERIWEEMSKRRIQHDVVSYASIISCYSKSSKLYRVLQLFEQMKKRNIT 340
Query: 241 CDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQA 300
DRKVYNAVI +LAK R+VK+A++L+ ME+ V P+ +TYNSLIKPLCKARK+DEA++
Sbjct: 341 PDRKVYNAVIFSLAKNRMVKEAVNLIIKMEDNNVTPDAITYNSLIKPLCKARKIDEAKEI 400
Query: 301 FDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQ 360
F+ ML+RGISP+IRT+HAF I+R EEVF LL+ M+++GC PT +TYIMLI+KF RWRQ
Sbjct: 401 FNVMLERGISPSIRTFHAFFRILRVKEEVFELLDKMKELGCNPTIETYIMLIRKFCRWRQ 460
Query: 361 FGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDEL 420
V ++WN + E+G G DRSSY LIH LFLN K+EEA++YY+EM+EK LPEPKT+ +
Sbjct: 461 LDEVKRIWNAMREDGIGHDRSSYIVLIHGLFLNCKVEEAYKYYIEMQEKGFLPEPKTESM 520
Query: 421 LQDWSYNKQFVERQIASLKAHQPQSG---QNTRVISKKSDQDREFLQQPETRRVVRHQGF 477
LQ W +Q + Q L+ +Q + G ++ + I K D++++FL++PETR V R GF
Sbjct: 521 LQAWLSGRQVTDSQATDLEHNQLEHGGLKKSVKPIQSKFDREKDFLREPETRSVSREGGF 580
Query: 478 SFWE 481
SFWE
Sbjct: 581 SFWE 584
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356560394|ref|XP_003548477.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/484 (64%), Positives = 379/484 (78%), Gaps = 3/484 (0%)
Query: 1 AKTLVDILREFSHKRSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSG 60
KT++ I+ E S+++ K+E C I +S ELV EVLS RNDWEAAFTFFLWAGKQ G
Sbjct: 128 VKTILAIMHEVGSGPSQIKQKLEHCSIVLSPELVVEVLSRTRNDWEAAFTFFLWAGKQPG 187
Query: 61 YAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVG 120
YAHS REYH+MI+ILGK+RKFDTAW LI+EMRGG G SLVT QTLLI+IR+YCAVHDV
Sbjct: 188 YAHSVREYHSMISILGKMRKFDTAWNLIEEMRGGRNGLSLVTPQTLLIMIRKYCAVHDVA 247
Query: 121 RAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILN 180
RAIN FYAYKRF F VG+E+F LLSALCRYKNVQDAE+L+FCNKDVFP +TKSFNIILN
Sbjct: 248 RAINTFYAYKRFNFRVGLEEFHSLLSALCRYKNVQDAEYLLFCNKDVFPLDTKSFNIILN 307
Query: 181 GWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIE 240
GWCN+I S+ AER+W EM +R I +DVVS+ IISCYSK+ L+KVLR+FD+MK+ I
Sbjct: 308 GWCNLIVSTSHAERIWHEMIKRRIQHDVVSYGSIISCYSKSSKLYKVLRMFDEMKKRKIT 367
Query: 241 CDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQA 300
DRKVYNAVI+ALAKGRLVK+A++L+ +ME V P+VVTYNSLIKPLCKA K+DEA+Q
Sbjct: 368 PDRKVYNAVIYALAKGRLVKEAVNLIGTMEGNDVTPDVVTYNSLIKPLCKAHKVDEAKQL 427
Query: 301 FDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQ 360
FDEML+R +SPTI+T+HAF I+RT EEVF LL+ M+++ C PT +TYIMLI+KF RW Q
Sbjct: 428 FDEMLKRHLSPTIQTFHAFFRILRTKEEVFELLDKMKELRCYPTIETYIMLIRKFCRWCQ 487
Query: 361 FGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDEL 420
+VFK+W+ + E+ DRSSY LIH LFLNGKLEEA +YY EM+EK LPEPKT+E+
Sbjct: 488 LDDVFKIWDAMREDEISHDRSSYIVLIHGLFLNGKLEEAQRYYAEMQEKGFLPEPKTEEM 547
Query: 421 LQDWSYNKQFVERQIASLKAHQPQSG---QNTRVISKKSDQDREFLQQPETRRVVRHQGF 477
LQ W KQ E Q L+ Q ++ + + I K D+ + FL++PETRRV R +GF
Sbjct: 548 LQAWVSGKQATEGQEKDLEPSQLENDTLKKKVKGIPSKFDRKKAFLREPETRRVTRERGF 607
Query: 478 SFWE 481
SFWE
Sbjct: 608 SFWE 611
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9755668|emb|CAC01820.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/476 (63%), Positives = 375/476 (78%), Gaps = 8/476 (1%)
Query: 7 ILREFSHKRSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTR 66
++++ R E+RNK+EEC +K S+ELV E+LS VRNDWE AFTFF+WAGKQ GY S R
Sbjct: 63 LVKDCGSDRKELRNKLEECDVKPSNELVVEILSRVRNDWETAFTFFVWAGKQQGYVRSVR 122
Query: 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAF 126
EYH+MI+ILGK+RKFDTAW LIDEMR + PSLV QTLLI+IR+YCAVHDVG+AIN F
Sbjct: 123 EYHSMISILGKMRKFDTAWTLIDEMR--KFSPSLVNSQTLLIMIRKYCAVHDVGKAINTF 180
Query: 127 YAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNII 186
+AYKRFK +GI+DFQ LLSALCRYKNV DA HL+FCNKD +PF+ KSFNI+LNGWCN+I
Sbjct: 181 HAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVLNGWCNVI 240
Query: 187 GSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVY 246
GS REAERVWMEM G+ +DVVS+S +ISCYSK +L+KVL+LFD+MK+ IE DRKVY
Sbjct: 241 GSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVY 300
Query: 247 NAVIHALAKGRLVKDAISLMKSM-EEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEML 305
NAV+HALAK V +A +LMK+M EEKG+ PNVVTYNSLIKPLCKARK +EA+Q FDEML
Sbjct: 301 NAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEML 360
Query: 306 QRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVF 365
++G+ PTIRTYHAF+ I+RTGEEVF LL MRKMGC+PT +TYIMLI+K RWR F NV
Sbjct: 361 EKGLFPTIRTYHAFMRILRTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVL 420
Query: 366 KVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWS 425
+W+E+ E GPD SSY +IH LFLNGK+EEA+ YY EMK+K + P ++++Q W
Sbjct: 421 LLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMRPNENVEDMIQSWF 480
Query: 426 YNKQFVERQIASLKAHQPQSGQNTRVISKKSDQDREFLQQPETRRVVRHQGFSFWE 481
KQ+ E++I K N I KKS++++ FLQQPE R+VVR G+SFW+
Sbjct: 481 SGKQYAEQRITDSKGE-----VNKGAIVKKSEREKNFLQQPEVRKVVREHGYSFWD 531
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334187687|ref|NP_197005.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635761|sp|Q9LFQ4.2|PP383_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15010, mitochondrial; Flags: Precursor gi|332004721|gb|AED92104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/476 (63%), Positives = 375/476 (78%), Gaps = 8/476 (1%)
Query: 7 ILREFSHKRSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTR 66
++++ R E+RNK+EEC +K S+ELV E+LS VRNDWE AFTFF+WAGKQ GY S R
Sbjct: 103 LVKDCGSDRKELRNKLEECDVKPSNELVVEILSRVRNDWETAFTFFVWAGKQQGYVRSVR 162
Query: 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAF 126
EYH+MI+ILGK+RKFDTAW LIDEMR + PSLV QTLLI+IR+YCAVHDVG+AIN F
Sbjct: 163 EYHSMISILGKMRKFDTAWTLIDEMR--KFSPSLVNSQTLLIMIRKYCAVHDVGKAINTF 220
Query: 127 YAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNII 186
+AYKRFK +GI+DFQ LLSALCRYKNV DA HL+FCNKD +PF+ KSFNI+LNGWCN+I
Sbjct: 221 HAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVLNGWCNVI 280
Query: 187 GSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVY 246
GS REAERVWMEM G+ +DVVS+S +ISCYSK +L+KVL+LFD+MK+ IE DRKVY
Sbjct: 281 GSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVY 340
Query: 247 NAVIHALAKGRLVKDAISLMKSM-EEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEML 305
NAV+HALAK V +A +LMK+M EEKG+ PNVVTYNSLIKPLCKARK +EA+Q FDEML
Sbjct: 341 NAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEML 400
Query: 306 QRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVF 365
++G+ PTIRTYHAF+ I+RTGEEVF LL MRKMGC+PT +TYIMLI+K RWR F NV
Sbjct: 401 EKGLFPTIRTYHAFMRILRTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVL 460
Query: 366 KVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWS 425
+W+E+ E GPD SSY +IH LFLNGK+EEA+ YY EMK+K + P ++++Q W
Sbjct: 461 LLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMRPNENVEDMIQSWF 520
Query: 426 YNKQFVERQIASLKAHQPQSGQNTRVISKKSDQDREFLQQPETRRVVRHQGFSFWE 481
KQ+ E++I K N I KKS++++ FLQQPE R+VVR G+SFW+
Sbjct: 521 SGKQYAEQRITDSKGE-----VNKGAIVKKSEREKNFLQQPEVRKVVREHGYSFWD 571
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 481 | ||||||
| TAIR|locus:2025747 | 540 | AT1G80880 [Arabidopsis thalian | 0.862 | 0.768 | 0.353 | 8e-69 | |
| TAIR|locus:2083671 | 523 | AT3G15200 [Arabidopsis thalian | 0.912 | 0.839 | 0.325 | 1.3e-61 | |
| TAIR|locus:2198908 | 448 | AT1G80550 [Arabidopsis thalian | 0.798 | 0.857 | 0.349 | 5.1e-58 | |
| TAIR|locus:2156213 | 637 | AT5G65820 [Arabidopsis thalian | 0.835 | 0.631 | 0.294 | 1.5e-49 | |
| TAIR|locus:2026346 | 510 | AT1G71060 [Arabidopsis thalian | 0.837 | 0.790 | 0.282 | 2.5e-49 | |
| TAIR|locus:2097395 | 638 | AT3G49730 [Arabidopsis thalian | 0.846 | 0.637 | 0.277 | 3.8e-46 | |
| TAIR|locus:2096099 | 599 | AT3G62470 "AT3G62470" [Arabido | 0.752 | 0.604 | 0.303 | 4.8e-46 | |
| TAIR|locus:2096074 | 599 | AT3G62540 "AT3G62540" [Arabido | 0.752 | 0.604 | 0.301 | 3.4e-45 | |
| TAIR|locus:2185455 | 598 | AT5G14820 "AT5G14820" [Arabido | 0.752 | 0.605 | 0.301 | 4.4e-45 | |
| TAIR|locus:2094394 | 562 | AT3G22670 [Arabidopsis thalian | 0.885 | 0.758 | 0.255 | 2.2e-43 |
| TAIR|locus:2025747 AT1G80880 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
Identities = 150/424 (35%), Positives = 235/424 (55%)
Query: 2 KTLVDILREFSHKRSEM--RNKIEECGIKXXXXXXXXXXXXXRNDWEAAFTFFLWAGKQS 59
K L+D++R+ S SE +E+ R++W AF F W G++
Sbjct: 92 KGLIDLIRQVSELESEADAMASLEDSSFDLNHDSFYSLIWELRDEWRLAFLAFKW-GEKR 150
Query: 60 GYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDV 119
G + MI +LG +KF+ AW LI +M S T++ + +++ RY A +D
Sbjct: 151 G-CDDQKSCDLMIWVLGNHQKFNIAWCLIRDM----FNVSKDTRKAMFLMMDRYAAANDT 205
Query: 120 GRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIIL 179
+AI F +FK E FQGLL ALCR+ +++ AE M +K +FP + + FN+IL
Sbjct: 206 SQAIRTFDIMDKFKHTPYDEAFQGLLCALCRHGHIEKAEEFMLASKKLFPVDVEGFNVIL 265
Query: 180 NGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGI 239
NGWCNI EA+R+W EM I + S+S +ISC+SK NL LRL+D+MK+ G+
Sbjct: 266 NGWCNIWTDVTEAKRIWREMGNYCITPNKDSYSHMISCFSKVGNLFDSLRLYDEMKKRGL 325
Query: 240 ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQ 299
+VYN++++ L + +A+ LMK + E+G+ P+ VTYNS+I+PLC+A KLD AR
Sbjct: 326 APGIEVYNSLVYVLTREDCFDEAMKLMKKLNEEGLKPDSVTYNSMIRPLCEAGKLDVARN 385
Query: 300 AFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWR 359
M+ +SPT+ T+HAFL+ + E+ +L M+ PT +T+++++ K + +
Sbjct: 386 VLATMISENLSPTVDTFHAFLEAVNF-EKTLEVLGQMKISDLGPTEETFLLILGKLFKGK 444
Query: 360 QFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDE 419
Q N K+W E+ + + Y A I L G LE+A + Y EMK K + P +
Sbjct: 445 QPENALKIWAEMDRFEIVANPALYLATIQGLLSCGWLEKAREIYSEMKSKGFVGNPMLQK 504
Query: 420 LLQD 423
LL++
Sbjct: 505 LLEE 508
|
|
| TAIR|locus:2083671 AT3G15200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
Identities = 147/452 (32%), Positives = 240/452 (53%)
Query: 2 KTLVDILREFSHKRSEMRNKI----EECGIKXXXXXXXXXXXXXRNDWEAAFTFFLWAGK 57
++ +D+ H R KI ++CGI R+DW+ A+ K
Sbjct: 76 QSALDVHNIIKHHRGSSPEKIKRILDKCGIDLTEELVLEVVNRNRSDWKPAYILSQLVVK 135
Query: 58 QSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH 117
QS + S+ Y+ ++ +LGK+R+F+ + DEM + V ++T +L+ RY A H
Sbjct: 136 QSVHLSSSMLYNEILDVLGKMRRFEEFHQVFDEMSKRD---GFVNEKTYEVLLNRYAAAH 192
Query: 118 DVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKD-VFPFNTKSFN 176
V A+ F K F + F GLL LCRYK+V+ AE L FC++ F + K+ N
Sbjct: 193 KVDEAVGVFERRKEFGIDDDLVAFHGLLMWLCRYKHVEFAETL-FCSRRREFGCDIKAMN 251
Query: 177 IILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKR 236
+ILNGWC ++G+ EA+R W ++ DVVS+ +I+ +K L K + L+ M
Sbjct: 252 MILNGWC-VLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELYRAMWD 310
Query: 237 MGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDE 296
D K+ N VI AL + + +A+ + + + EKG PNVVTYNSL+K LCK R+ ++
Sbjct: 311 TRRNPDVKICNNVIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCKIRRTEK 370
Query: 297 ARQAFDEMLQRG--ISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKK 354
+ +EM +G SP T+ L + ++V +LE M K C+ T+D Y ++ +
Sbjct: 371 VWELVEEMELKGGSCSPNDVTFSYLLKYSQRSKDVDIVLERMAKNKCEMTSDLYNLMFRL 430
Query: 355 FSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPE 414
+ +W + V ++W+E+ +G GPD+ +YT IH L GK+ EA Y+ EM K ++PE
Sbjct: 431 YVQWDKEEKVREIWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSKGMVPE 490
Query: 415 PKTDELLQDWSYNKQFVERQIAS-LKAHQPQS 445
P+T+ LL + ++ + S L + + +S
Sbjct: 491 PRTEMLLNQNKTKPRVEDKMLRSNLTSEESES 522
|
|
| TAIR|locus:2198908 AT1G80550 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 139/398 (34%), Positives = 216/398 (54%)
Query: 43 NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGG-ETGPSLV 101
NDW+ A FF W ++SG+ H+T ++ +I ILGK +F+ +WALI+ M G E+ P+ V
Sbjct: 59 NDWQKALEFFNWVERESGFRHTTETFNRVIDILGKYFEFEISWALINRMIGNTESVPNHV 118
Query: 102 TKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM 161
T + I+ +RY H V AI+A+ F F L+ ALC +K+V +AE L
Sbjct: 119 TFR---IVFKRYVTAHLVQEAIDAYDKLDDFNLR-DETSFYNLVDALCEHKHVVEAEELC 174
Query: 162 FCNKDVFP--F---NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIIS 216
F K+V F NTK N+IL GW + G + + W +M G+ D+ S+S +
Sbjct: 175 F-GKNVIGNGFSVSNTKIHNLILRGWSKL-GWWGKCKEYWKKMDTEGVTKDLFSYSIYMD 232
Query: 217 CYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAP 276
K+ K ++L+ +MK ++ D YN VI A+ + V+ I + + M E+G P
Sbjct: 233 IMCKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEP 292
Query: 277 NVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESM 336
NV T+N++IK LC+ ++ +A + DEM +RG P TY + E+ L M
Sbjct: 293 NVATHNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDSITYMCLFSRLEKPSEILSLFGRM 352
Query: 337 RKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKL 396
+ G +P DTY+ML++KF RW V VW + E+G+ PD ++Y A+I AL G L
Sbjct: 353 IRSGVRPKMDTYVMLMRKFERWGFLQPVLYVWKTMKESGDTPDSAAYNAVIDALIQKGML 412
Query: 397 EEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQ 434
+ A +Y EM E+ L P + EL++ S ++ V R+
Sbjct: 413 DMAREYEEEMIERGLSPR-RRPELVEK-SLDETLVCRE 448
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| TAIR|locus:2156213 AT5G65820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 120/408 (29%), Positives = 206/408 (50%)
Query: 7 ILREFSHKRSEMRNKIEECGIKXXXXXXXXXXXXXRNDWEAAFTFFLWAGKQSGYAHSTR 66
ILR+F + ++ + E G++ + + FF+WA KQ Y HS
Sbjct: 89 ILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIE 148
Query: 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAF 126
Y +M+ IL K+R+F W LI+EMR + P L+ + ++L++R+ + V +AI
Sbjct: 149 VYKSMVKILSKMRQFGAVWGLIEEMR--KENPQLIEPELFVVLVQRFASADMVKKAIEVL 206
Query: 127 YAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNII 186
+F F F LL ALC++ +V+DA L + FP N + F +L GWC +
Sbjct: 207 DEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYFTSLLYGWCRV- 265
Query: 187 GSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVY 246
G EA+ V ++M++ G D+V ++ ++S Y+ A + L M+R G E + Y
Sbjct: 266 GKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCY 325
Query: 247 NAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQ 306
+I AL K +++A+ + ME +VVTY +L+ CK K+D+ D+M++
Sbjct: 326 TVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIK 385
Query: 307 RGISPTIRTY-HAFL--DIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGN 363
+G+ P+ TY H + + + EE L+E MR++ P Y ++I+ + +
Sbjct: 386 KGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKE 445
Query: 364 VFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQL 411
++WNE+ ENG P ++ +I+ L G L EA ++ EM + L
Sbjct: 446 AVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRGL 493
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| TAIR|locus:2026346 AT1G71060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 118/417 (28%), Positives = 211/417 (50%)
Query: 1 AKTLVDILREFSHKRSEMRNKIEECGIKXXXXXXXXXXXXXRNDWEAAFTFFLWAGKQSG 60
A+ + IL +F+ S++ + E +K N A + F WA Q G
Sbjct: 66 AERICKILTKFTD--SKVETLLNEASVKLSPALIEEVLKKLSNAGVLALSVFKWAENQKG 123
Query: 61 YAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVG 120
+ H+T Y+ +I LGK+++F W+L+D+M+ + L++K+T ++ RRY V
Sbjct: 124 FKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKK----LLSKETFALISRRYARARKVK 179
Query: 121 RAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMF-CNKDVFPFNTKSFNIIL 179
AI AF+ + F F + DF +L L + +NV DA+ + K F + KS+ I+L
Sbjct: 180 EAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILL 239
Query: 180 NGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGI 239
GW + R + V EM G DVV++ II+ + KA+ + +R F++M++
Sbjct: 240 EGWGQELNLLR-VDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNC 298
Query: 240 ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQ 299
+ ++ ++I+ L + + DA+ + + G TYN+L+ C ++++++A +
Sbjct: 299 KPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYK 358
Query: 300 AFDEMLQRGISPTIRTYHAFLD-IIRT--GEEVFGLLESMRKMGCQPTNDTYIMLIKKFS 356
DEM +G+ P RTY L +IR +E + E + M C+PT TY ++++ F
Sbjct: 359 TVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAY---EVYQTMSCEPTVSTYEIMVRMFC 415
Query: 357 RWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLP 413
+ K+W+E+ G P +++LI AL KL+EA +Y+ EM + + P
Sbjct: 416 NKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRP 472
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| TAIR|locus:2097395 AT3G49730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 115/414 (27%), Positives = 202/414 (48%)
Query: 7 ILREFSHKRSEMRNKIEECGIKXXXXXXXXXXXXXRNDWEAAFTFFLWAGKQSGYAHSTR 66
ILR + ++ + E GI + + FFLWA KQ GY HS
Sbjct: 73 ILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLWATKQPGYFHSYE 132
Query: 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAF 126
+M+ IL K+R+F W LI+EMR +T P L+ + ++L+RR+ + + V +A+
Sbjct: 133 VCKSMVMILSKMRQFGAVWGLIEEMR--KTNPELIEPELFVVLMRRFASANMVKKAVEVL 190
Query: 127 YAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNII 186
++ F LL ALC+ +V++A + ++ FP N + F +L GWC
Sbjct: 191 DEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYGWCRE- 249
Query: 187 GSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVY 246
G EA+ V ++M + G+ D+V F+ ++S Y+ A + L + M++ G E + Y
Sbjct: 250 GKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCY 309
Query: 247 NAVIHALAKG-RLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEML 305
+I AL + + + +A+ + ME G ++VTY +LI CK +D+ D+M
Sbjct: 310 TVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMR 369
Query: 306 QRGISPTIRTYHAFL---DIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFG 362
++G+ P+ TY + + EE L+E M++ GC P Y ++I+ + +
Sbjct: 370 KKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVK 429
Query: 363 NVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPK 416
++WNE+ NG P ++ +I+ G L EA ++ EM + + P+
Sbjct: 430 EAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAPQ 483
|
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| TAIR|locus:2096099 AT3G62470 "AT3G62470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 113/372 (30%), Positives = 196/372 (52%)
Query: 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLV 101
R+ + AF FF WA ++ G+AH +R Y++M++IL K R+F+T ++++EM G G L+
Sbjct: 172 RHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEM--GTKG--LL 227
Query: 102 TKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM 161
T +T I ++ + A + +A+ F K++KF +G+E LL +L R K ++A+ L
Sbjct: 228 TMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLF 287
Query: 162 FCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKA 221
K+ F N ++ ++LNGWC + + EA R+W +M +G+ D+V+ + ++ ++
Sbjct: 288 DKLKERFTPNMMTYTVLLNGWCRV-RNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRS 346
Query: 222 RNLHKVLRLFDQMKRMGIECDR-KVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVT 280
R ++LF MK G C + Y +I K ++ AI M + G+ P+
Sbjct: 347 RKKSDAIKLFHVMKSKG-PCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAV 405
Query: 281 YNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDII---RTGEEVFGLLESMR 337
Y LI +KLD + EM ++G P +TY+A + ++ + E + M
Sbjct: 406 YTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMI 465
Query: 338 KMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLE 397
+ +P+ T+ M++K + R + VW E+ + G PD +SYT LI L GK
Sbjct: 466 QNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSR 525
Query: 398 EAHQYYMEMKEK 409
EA +Y EM +K
Sbjct: 526 EACRYLEEMLDK 537
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| TAIR|locus:2096074 AT3G62540 "AT3G62540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 112/372 (30%), Positives = 196/372 (52%)
Query: 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLV 101
R+ + AF FF WA ++ G+AH++R Y++M++IL K R+F+T ++++EM G G L+
Sbjct: 172 RHARKPAFRFFCWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEM--GTKG--LL 227
Query: 102 TKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM 161
T +T I ++ + A + +A+ F K++KF +G+E LL +L R K ++A+ L
Sbjct: 228 TMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLF 287
Query: 162 FCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKA 221
K+ F N ++ ++LNGWC + + EA R+W +M G+ D+V+ + ++ ++
Sbjct: 288 DKLKERFTPNMMTYTVLLNGWCRV-RNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRS 346
Query: 222 RNLHKVLRLFDQMKRMGIECDR-KVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVT 280
++LF MK G C + Y +I K ++ AI M + G+ P+
Sbjct: 347 MKKSDAIKLFHVMKSKG-PCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAV 405
Query: 281 YNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDII---RTGEEVFGLLESMR 337
Y LI +KLD + EM ++G P +TY+A + ++ + E + M
Sbjct: 406 YTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMI 465
Query: 338 KMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLE 397
+ +P+ T+ M++K + R + VW+E+ + G PD +SYT LI L GK
Sbjct: 466 QNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSR 525
Query: 398 EAHQYYMEMKEK 409
EA +Y EM +K
Sbjct: 526 EACRYLEEMLDK 537
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| TAIR|locus:2185455 AT5G14820 "AT5G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 112/372 (30%), Positives = 195/372 (52%)
Query: 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLV 101
R+ + AF FF WA ++ G+AH +R Y++M++IL K R+F+T ++++EM G G L+
Sbjct: 171 RHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEM--GTKG--LL 226
Query: 102 TKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM 161
T +T I ++ + A + +A+ F K++KF +G+E LL +L R K ++A+ L
Sbjct: 227 TMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLF 286
Query: 162 FCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKA 221
K+ F N ++ ++LNGWC + + EA R+W +M G+ D+V+ + ++ ++
Sbjct: 287 DKLKERFTPNMMTYTVLLNGWCRV-RNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRS 345
Query: 222 RNLHKVLRLFDQMKRMGIECDR-KVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVT 280
++LF MK G C + Y +I K ++ AI M + G+ P+
Sbjct: 346 MKKSDAIKLFHVMKSKG-PCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAV 404
Query: 281 YNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDII---RTGEEVFGLLESMR 337
Y LI +KLD + EM ++G P +TY+A + ++ + E + M
Sbjct: 405 YTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMI 464
Query: 338 KMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLE 397
+ +P+ T+ M++K + R + VW+E+ + G PD +SYT LI L GK
Sbjct: 465 QNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSR 524
Query: 398 EAHQYYMEMKEK 409
EA +Y EM +K
Sbjct: 525 EACRYLEEMLDK 536
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| TAIR|locus:2094394 AT3G22670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 112/439 (25%), Positives = 210/439 (47%)
Query: 6 DILREFSHKRSEMRNKIEECGIKXXXXXXXXXXXXXRNDWEAAFTFFLWAGKQSGYAHST 65
D L + ++ ++ +C + N W A+ FF+WA Q+GY HS
Sbjct: 107 DFLNKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWANSQTGYVHSG 166
Query: 66 REYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINA 125
Y+ M+ +LGK R FD W L++EM E LVT T+ ++RR +A++A
Sbjct: 167 HTYNAMVDVLGKCRNFDLMWELVNEMNKNEES-KLVTLDTMSKVMRRLAKSGKYNKAVDA 225
Query: 126 FYAYKRFKFAVGIEDF--QGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWC 183
F ++ + V + L+ AL + +++ A + D + ++FNI+++G+C
Sbjct: 226 FLEMEK-SYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPDARTFNILIHGFC 284
Query: 184 NIIGSSREAERVWME-MSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECD 242
+ R M+ M DVV+++ + Y K + +V + ++M+ G +
Sbjct: 285 K--ARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPN 342
Query: 243 RKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFD 302
Y V+H+L K + V +A+ + + M+E G P+ Y+SLI L K + +A + F+
Sbjct: 343 VVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFE 402
Query: 303 EMLQRGISPTIRTYHAFLD--IIRTGEEV-FGLLESMR-KMG--CQPTNDTYIMLIKKFS 356
+M +G+ + Y+ + + + +E+ LL+ M + G C P +TY L+K
Sbjct: 403 DMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYAPLLKMCC 462
Query: 357 RWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPK 416
++ + + + + +N D S+Y LI L ++GK+EEA ++ E K ++P
Sbjct: 463 HKKKMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEACLFFEEAVRKGMVPRDS 522
Query: 417 TDELLQDWSYNKQFVERQI 435
T ++L D K E ++
Sbjct: 523 TCKMLVDELEKKNMAEAKL 541
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LFQ4 | PP383_ARATH | No assigned EC number | 0.6386 | 0.9729 | 0.8181 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00130527 | hypothetical protein (518 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 481 | |||
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-12 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 0.003 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 5e-14
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 276 PNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLD 321
P+VVTYN+LI CK K++EA + F+EM +RGI P + TY +D
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
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This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 6e-14
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 246 YNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCK 290
YN +I K V++A+ L M+++G+ PNV TY+ LI LCK
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
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This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 1e-13
Identities = 48/246 (19%), Positives = 103/246 (41%), Gaps = 6/246 (2%)
Query: 175 FNIILNGWCNIIGSSREAERVWMEMSQRG--ICYDVVSFSCIISCYSKARNLHKVLRLFD 232
FN +++ C G+ A V EM I D ++ ++ + A + + ++
Sbjct: 545 FNALISA-CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603
Query: 233 QMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKAR 292
+ I+ +VY +++ ++ A+S+ M++KGV P+ V +++L+ A
Sbjct: 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663
Query: 293 KLDEARQAFDEMLQRGISPTIRTYHAFLDI---IRTGEEVFGLLESMRKMGCQPTNDTYI 349
LD+A + + ++GI +Y + + + ++ L E ++ + +PT T
Sbjct: 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN 723
Query: 350 MLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409
LI Q +V +E+ G P+ +Y+ L+ A + + KE
Sbjct: 724 ALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783
Query: 410 QLLPEP 415
+ P
Sbjct: 784 GIKPNL 789
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 4e-12
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 207 DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAK 255
DVV+++ +I Y K + + L+LF++MK+ GI+ + Y+ +I L K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 4e-11
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 272 KGVAPNVVTYNSLIKPLCKARKLDEARQAFDEM 304
KG+ P+VVTYN+LI LC+A ++DEA + DEM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 2e-09
Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 22/212 (10%)
Query: 207 DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLM 266
DVVS++ +++ Y + LF++M G+ D + +++ A ++ +V +
Sbjct: 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612
Query: 267 KSMEEK-GVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRT 325
SMEEK + PN+ Y ++ L +A KL EA ++M I+P + A L+ R
Sbjct: 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRI 669
Query: 326 GEEV-FGLLESMRKMGCQPTNDTYIMLIKKF----SRWRQFGNVFKVWNEISENG----N 376
V G L + P + Y +L+ +W + V +V + ENG
Sbjct: 670 HRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDE---VARVRKTMRENGLTVDP 726
Query: 377 GPDRSSYTALIHALFLNGKLEEAHQYYMEMKE 408
G +HA FL + + ++KE
Sbjct: 727 GCSWVEVKGKVHA-FLTDD-----ESHPQIKE 752
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 8e-09
Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 8/194 (4%)
Query: 226 KVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLI 285
+VLRL ++ G++ D K+Y +I AK V + M GV NV T+ +LI
Sbjct: 458 RVLRL---VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514
Query: 286 KPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDII-RTG--EEVFGLLESMRKMG-- 340
+A ++ +A A+ M + + P ++A + ++G + F +L M+
Sbjct: 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP 574
Query: 341 CQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAH 400
P + T L+K + Q +V+ I E YT +++ G + A
Sbjct: 575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL 634
Query: 401 QYYMEMKEKQLLPE 414
Y +MK+K + P+
Sbjct: 635 SIYDDMKKKGVKPD 648
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 47/230 (20%), Positives = 99/230 (43%), Gaps = 11/230 (4%)
Query: 192 AERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIH 251
A RV + + G+ D ++ +IS +K+ + + +F +M G+E + + A+I
Sbjct: 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515
Query: 252 ALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRG--I 309
A+ V A M K V P+ V +N+LI ++ +D A EM I
Sbjct: 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575
Query: 310 SPTIRTYHAFLDI-IRTGE-----EVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGN 363
P T A + G+ EV+ + + + + T + Y + + S+ +
Sbjct: 576 DPDHITVGALMKACANAGQVDRAKEVY---QMIHEYNIKGTPEVYTIAVNSCSQKGDWDF 632
Query: 364 VFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLP 413
+++++ + G PD ++AL+ G L++A + + +++ +
Sbjct: 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 6e-07
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 279 VTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTI 313
VTYN+LI LCKA +++EA + F EM +RGI P +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 7e-07
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 171 NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSK 220
+ ++N +++G+C G EA +++ EM +RGI +V ++S +I K
Sbjct: 2 DVVTYNTLIDGYCKK-GKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-06
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 209 VSFSCIISCYSKARNLHKVLRLFDQMKRMGIECD 242
V+++ +I KA + + L LF +MK GIE D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 2e-06
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 378 PDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLP 413
PD +Y LI GK+EEA + + EMK++ + P
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKP 36
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 7e-06
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 186 IGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKV 245
+GS EAE+V+ M D VS++ +IS Y K K L + M++ + D
Sbjct: 336 LGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT 391
Query: 246 YNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEM 304
+V+ A A + + L + E KG+ VV N+LI+ K + +D+A + F +
Sbjct: 392 IASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 245 VYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNV 278
YN +I L K V++A+ L K M+E+G+ P+V
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 2e-05
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 209 VSFSCIISCYSKARNLHKVLRLFDQMKRMGI 239
V+++ +IS Y KA L + L LF +MK G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 62/295 (21%), Positives = 117/295 (39%), Gaps = 37/295 (12%)
Query: 137 GIEDFQGLLSALCRYKNVQDAEHLM--FCNKDVFPFNTKSFNIILNGWCNIIGSSREAER 194
G+ +LS R+ + A ++ +D+F S+N+++ G+ G EA
Sbjct: 120 GVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLF-----SWNVLVGGYAKA-GYFDEALC 173
Query: 195 VWMEMSQRGICYDVVSFSCII-SC-----YSKARNLHKVLRLFDQMKRMGIECDRKVYNA 248
++ M G+ DV +F C++ +C ++ R +H + R G E D V NA
Sbjct: 174 LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA------HVVRFGFELDVDVVNA 227
Query: 249 VIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRG 308
+I K V A + M + + +++N++I + + E + F M +
Sbjct: 228 LITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELS 283
Query: 309 ISPTIRTYHA------FLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFG 362
+ P + T + L R G E+ G + ++ I + W +
Sbjct: 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343
Query: 363 NVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417
VF D S+TA+I NG ++A + Y M++ + P+ T
Sbjct: 344 KVF-------SRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT 391
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 3e-05
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 279 VTYNSLIKPLCKARKLDEARQAFDEMLQRGI 309
VTYNSLI CKA KL+EA + F EM ++G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 39/173 (22%), Positives = 85/173 (49%), Gaps = 10/173 (5%)
Query: 245 VYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEM 304
YN + L GR+ KD I L++ ME++G+ Y++ CK ++ + F ++
Sbjct: 376 AYNRL---LRDGRI-KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKL 431
Query: 305 LQRGISPTIRTYHAFLDIIRTGEEVFGLLESMR---KMGCQPTNDTYIMLIKKFSRWRQF 361
++ +PT+ T++ + + + +++ G L +R + G + Y LI ++ +
Sbjct: 432 IR---NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488
Query: 362 GNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPE 414
+F+V++E+ G + ++ ALI G++ +A Y M+ K + P+
Sbjct: 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 29/137 (21%), Positives = 63/137 (45%), Gaps = 4/137 (2%)
Query: 186 IGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKV 245
+GS+R +++ + + G+ D +I YSK ++ +FD M
Sbjct: 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT----VA 292
Query: 246 YNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEML 305
+N+++ A ++A+ L M + GV+ + T++ +I+ + L+ A+QA ++
Sbjct: 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352
Query: 306 QRGISPTIRTYHAFLDI 322
+ G I A +D+
Sbjct: 353 RTGFPLDIVANTALVDL 369
|
Length = 697 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 1e-04
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 278 VVTYNSLIKPLCKARKLDEARQAFDEMLQRGISP 311
+ TYN+L+ L KA D A +EM G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 2e-04
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 347 TYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHAL 390
TY LI + + + K++NE+ + G P+ +Y+ LI L
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 2e-04
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 202 RGICYDVVSFSCIISCYSKARNLHKVLRLFDQMK 235
+G+ DVV+++ +I +A + + + L D+M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 6e-04
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 245 VYNAVIHALAKGRLVKDAISLMKSMEEKGV 274
YN++I K +++A+ L K M+EKGV
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 6e-04
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 381 SSYTALIHALFLNGKLEEAHQYYMEMKEKQL 411
+Y +LI GKLEEA + + EMKEK +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 8e-04
Identities = 45/221 (20%), Positives = 99/221 (44%), Gaps = 20/221 (9%)
Query: 187 GSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVY 246
G +A V+ M ++ V+++ +++ Y+ + L L+ +M+ G+ D+ +
Sbjct: 273 GDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328
Query: 247 NAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQ 306
+ +I ++ L++ A + G ++V +L+ K ++++AR FD M +
Sbjct: 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388
Query: 307 RGI---SPTIRTY--HAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIK--KFSRWR 359
+ + + I Y H G + + E M G P + T++ ++ ++S
Sbjct: 389 KNLISWNALIAGYGNHG------RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS 442
Query: 360 QFGNVFKVWNEISEN-GNGPDRSSYTALIHALFLNGKLEEA 399
+ G ++++ +SEN P Y +I L G L+EA
Sbjct: 443 EQG--WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 382 SYTALIHALFLNGKLEEAHQYYMEMKEKQLLP 413
+Y LI L G++EEA + + EMKE+ + P
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 245 VYNAVIHALAKGRLVKDAISLMKSMEEKGVAP 276
YNA++ ALAK A+++++ M+ G+ P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.003
Identities = 50/213 (23%), Positives = 94/213 (44%), Gaps = 30/213 (14%)
Query: 206 YDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISL 265
YD + +CI +++ V ++ ++ G E D+ + N V+ K ++ DA L
Sbjct: 126 YDALVEACI-----ALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRL 180
Query: 266 MKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTY------HAF 319
M E+ N+ ++ ++I L A EA F EM + G RT+ A
Sbjct: 181 FDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236
Query: 320 LDIIRTGEEVFGLLESMRKMGCQPTNDTYIM--LIKKFSRWRQFGNVFKVWNEISENGNG 377
L R G++ L + K G DT++ LI +S+ + V++ +
Sbjct: 237 LGSARAGQQ---LHCCVLKTGV--VGDTFVSCALIDMYSKCGDIEDARCVFDGM------ 285
Query: 378 PDRS--SYTALIHALFLNGKLEEAHQYYMEMKE 408
P+++ ++ +++ L+G EEA Y EM++
Sbjct: 286 PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318
|
Length = 697 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 481 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.83 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.81 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.78 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.76 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.75 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.71 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.7 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.66 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.64 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.63 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.63 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.61 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.6 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.59 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.58 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.57 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.57 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.56 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.54 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.54 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.52 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.51 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.51 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.43 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.43 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.42 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.41 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.4 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.39 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.37 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.37 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.37 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.36 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.36 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.34 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.33 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.33 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.3 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.29 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.28 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.25 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.23 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.19 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.18 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.16 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.16 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.15 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.14 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.14 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.12 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.1 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.08 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.08 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.08 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.07 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.07 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.05 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.03 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.02 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.96 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.92 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.91 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.83 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.81 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.81 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.79 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.77 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.76 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.75 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.71 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.69 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.69 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.67 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.66 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.65 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.6 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.59 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.56 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.55 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.55 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.55 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.55 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.54 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.54 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.54 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.52 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.52 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.52 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.51 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.5 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.5 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.49 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.49 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.49 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.43 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.41 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.4 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.4 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.39 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.38 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.37 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.35 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.34 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.33 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.3 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.29 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.28 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.28 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.27 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.25 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.24 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.24 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.2 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.18 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.17 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.15 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.14 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.14 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.09 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.06 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.05 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.04 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.01 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.98 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.98 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.97 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.96 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.96 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.94 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.94 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.83 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.77 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.75 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.73 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.71 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.69 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.67 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.65 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.62 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.61 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.6 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.56 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.56 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.53 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.51 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.51 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.45 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.4 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.4 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.37 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.36 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.35 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.32 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.32 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.22 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.22 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.21 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.2 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.18 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.18 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.14 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.13 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.12 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.12 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.08 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.06 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.01 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.97 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.97 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.95 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.95 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.85 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.82 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.81 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.8 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.71 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.67 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.62 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.55 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.54 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.54 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.46 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.41 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.39 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.39 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.39 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.26 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.24 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.21 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.19 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.18 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.18 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.13 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.12 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.11 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.1 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.95 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.82 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.8 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.7 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.67 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.57 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.5 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.39 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.38 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.36 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.36 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.16 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.15 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.13 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.07 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.06 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.03 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.01 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.0 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.9 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.66 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.57 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.56 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.48 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.47 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.46 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.41 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.37 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.35 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.31 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.29 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.29 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.27 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.25 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.24 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.2 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 93.89 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.74 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 93.66 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 93.4 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 93.37 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.35 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.33 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.18 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.03 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.03 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 92.96 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.95 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.88 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.53 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.47 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.46 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.29 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 92.08 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.99 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.84 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.74 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.65 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.58 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.29 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 91.15 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 90.91 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.71 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 90.67 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.4 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 90.11 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.87 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.83 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.75 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.71 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.31 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 89.25 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.95 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 88.93 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.81 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 88.59 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.56 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 88.5 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.38 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 87.92 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.31 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 86.63 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 86.51 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 86.16 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 86.01 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 85.94 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.88 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 85.65 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 84.84 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.81 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 84.74 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.51 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 84.39 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 83.97 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 83.77 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 83.39 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 83.08 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 82.76 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.77 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 81.29 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 80.83 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 80.63 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 80.54 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 80.53 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.3 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-62 Score=489.23 Aligned_cols=441 Identities=16% Similarity=0.213 Sum_probs=392.7
Q ss_pred CCHHHHHHHHHHhh--cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHH
Q 042941 29 VSSELVSEVLSWVR--NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTL 106 (481)
Q Consensus 29 ~~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~ 106 (481)
|+..+|+.++..++ ++.+.|.++|+.| ...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|| ..+|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M-~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd---vvTy 510 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLV-QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN---VHTF 510 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC---HHHH
Confidence 78888889999884 6778999999998 6688899999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhcc---CCCCCchHhHHHHHHHHH
Q 042941 107 LILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNK---DVFPFNTKSFNIILNGWC 183 (481)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~l~~~~~ 183 (481)
+.+|.+|++.|++++|..+|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .++.||..+|+.++.+|+
T Consensus 511 naLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~ 590 (1060)
T PLN03218 511 GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999875 357899999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 042941 184 NIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAI 263 (481)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 263 (481)
+.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.
T Consensus 591 -k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 591 -NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred -HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchh---HHHHHHHHHHHcC
Q 042941 264 SLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGE---EVFGLLESMRKMG 340 (481)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~~~~~~~~~~ 340 (481)
++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.+ ++.+++++|.+.|
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999998875 4588899999999
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCHH
Q 042941 341 CQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFL----N-------------------GKLE 397 (481)
Q Consensus 341 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~ 397 (481)
+.||..+|+.++.+|++.|++++|.+++.+|.+.|+.||..+|++++..|.+ + +..+
T Consensus 750 i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~ 829 (1060)
T PLN03218 750 LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTS 829 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHH
Confidence 9999999999999999999999999999999999999999999999866432 1 2246
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHHHHHHHHHhhcC--c--cCCCCccccccccccchhh-ccCccccchh
Q 042941 398 EAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQIASLKAHQ--P--QSGQNTRVISKKSDQDREF-LQQPETRRVV 472 (481)
Q Consensus 398 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~l~~~~~~~~~~-~~a~~~r~~~ 472 (481)
+|..+|++|.+.|+.||..||+.++.++...+....+.+.+.... | .+...|..+..-+ +++ ++|..+...|
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em 906 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEA 906 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHH
Confidence 799999999999999999999999987766666666555554332 2 2334455555443 433 4788888888
Q ss_pred ccccc
Q 042941 473 RHQGF 477 (481)
Q Consensus 473 ~~~~~ 477 (481)
.++|+
T Consensus 907 ~~~Gi 911 (1060)
T PLN03218 907 ASLGV 911 (1060)
T ss_pred HHcCC
Confidence 88775
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-61 Score=480.88 Aligned_cols=411 Identities=16% Similarity=0.226 Sum_probs=386.7
Q ss_pred HHHhcC--CChhHHHHHHHhcCC-CCCHHHHHHHHHHhh--cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCCh
Q 042941 7 ILREFS--HKRSEMRNKIEECGI-KVSSELVSEVLSWVR--NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKF 81 (481)
Q Consensus 7 ~~~~~~--~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 81 (481)
.+.+.+ ..|.++++.|.+.|+ +++...+..++..+. +..++|+.+|..|.. ||..+|+.++.+|++.|++
T Consensus 379 ~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~ 453 (1060)
T PLN03218 379 RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDI 453 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCH
Confidence 344445 488999999999986 456666667777763 667999999988842 8999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHH
Q 042941 82 DTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM 161 (481)
Q Consensus 82 ~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 161 (481)
+.|.++|+.|.+.|+.|| ..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|
T Consensus 454 e~A~~lf~~M~~~Gl~pD---~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 454 DGALRVLRLVQEAGLKAD---CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcc-CCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042941 162 FCNK-DVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQ--RGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMG 238 (481)
Q Consensus 162 ~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 238 (481)
+.|. .++.||..+|+.+|.+|+ +.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|+.|.+.|
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~-k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACG-QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 9975 568999999999999999 99999999999999986 6789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 042941 239 IECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHA 318 (481)
Q Consensus 239 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 318 (481)
+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.|+..+|+.
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyns 689 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhchhH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042941 319 FLDIIRTGEE---VFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGK 395 (481)
Q Consensus 319 li~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (481)
+|.+|++.++ +.++++.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~ 769 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 9999988764 5889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 042941 396 LEEAHQYYMEMKEKQLLPEPKTDELLQDWSY 426 (481)
Q Consensus 396 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 426 (481)
+++|.+++++|.+.|+.||..+|+.++..+.
T Consensus 770 le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 770 ADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999987653
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-62 Score=494.88 Aligned_cols=458 Identities=18% Similarity=0.198 Sum_probs=375.2
Q ss_pred HHHHHHhcC--CChhHHHHHHHhcCCCCCHHHHHHHHHHhh-------------------------------------cC
Q 042941 4 LVDILREFS--HKRSEMRNKIEECGIKVSSELVSEVLSWVR-------------------------------------ND 44 (481)
Q Consensus 4 ~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-------------------------------------~~ 44 (481)
++..+.+.+ +.|..++..|...|+.|+..+|+.++..+. ++
T Consensus 158 li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 237 (857)
T PLN03077 158 LVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC
Confidence 344455554 366666777766676666666665555442 45
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHH
Q 042941 45 WEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAIN 124 (481)
Q Consensus 45 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~ 124 (481)
.+.|.++|+.|. .||..+||++|.+|++.|++++|+++|++|.+.|+.|| ..+|+.++.+|++.|+++.+.+
T Consensus 238 ~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd---~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 238 VVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD---LMTITSVISACELLGDERLGRE 309 (857)
T ss_pred HHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCChHHHHH
Confidence 567777777763 26778888888888888888888888888888899998 8889999999999999999999
Q ss_pred HHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 042941 125 AFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGI 204 (481)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~ 204 (481)
++..+.+.|+.||..+|+.|+.+|++.|++++|.++|+.+.. ||..+||.++.+|+ +.|++++|.++|++|.+.|+
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~-~~g~~~~A~~lf~~M~~~g~ 385 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYE-KNGLPDKALETYALMEQDNV 385 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHH-hCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999998863 78899999999999 99999999999999999999
Q ss_pred cccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 042941 205 CYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSL 284 (481)
Q Consensus 205 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 284 (481)
.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|++++.+|++.|++++|.++|++|.+ +|..+|+.+
T Consensus 386 ~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~m 461 (857)
T PLN03077 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSI 461 (857)
T ss_pred CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999865 578889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH------------------------------------------
Q 042941 285 IKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDI------------------------------------------ 322 (481)
Q Consensus 285 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~------------------------------------------ 322 (481)
|.+|++.|+.++|..+|++|.. ++.||..||+.++.+
T Consensus 462 i~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 462 IAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH
Confidence 9999999999999999988875 466666665555544
Q ss_pred -----------------------Hhchh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-HCC
Q 042941 323 -----------------------IRTGE---EVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEIS-ENG 375 (481)
Q Consensus 323 -----------------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~ 375 (481)
|++.| ++.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|
T Consensus 541 ~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g 620 (857)
T PLN03077 541 NYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS 620 (857)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhC
Confidence 43332 336677777777777777777777777777777777777777777 567
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh---hhhHHHHHHHHHhhcCccCCCCcccc
Q 042941 376 NGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSY---NKQFVERQIASLKAHQPQSGQNTRVI 452 (481)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l 452 (481)
+.|+..+|++++.+|++.|++++|.+++++|. +.||..+|+.++..+. +.+..+.+.+.+.+..|+++..|..+
T Consensus 621 i~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll 697 (857)
T PLN03077 621 ITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILL 697 (857)
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHH
Confidence 77777777777777777777777777777773 6777777777777654 33455567778888999999999999
Q ss_pred ccccccchhhccCccccchhcc------cccccCC
Q 042941 453 SKKSDQDREFLQQPETRRVVRH------QGFSFWE 481 (481)
Q Consensus 453 ~~~~~~~~~~~~a~~~r~~~~~------~~~~~~~ 481 (481)
+++|...|+|++|.++|+.|++ +|+||+|
T Consensus 698 ~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie 732 (857)
T PLN03077 698 CNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVE 732 (857)
T ss_pred HHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEE
Confidence 9999999999999999999987 4899985
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-62 Score=484.82 Aligned_cols=457 Identities=15% Similarity=0.193 Sum_probs=421.8
Q ss_pred HHHHHhcC--CChhHHHHHHHhcC-CCCCHHHHHHHHHHhh--cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccC
Q 042941 5 VDILREFS--HKRSEMRNKIEECG-IKVSSELVSEVLSWVR--NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVR 79 (481)
Q Consensus 5 ~~~~~~~~--~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 79 (481)
+..+.+.+ +.|.+++..|...+ ..|+..+++.++..+. ++.+.+.+++..+ ...|+.||..+|+.++..|++.|
T Consensus 94 i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m-~~~g~~~~~~~~n~Li~~y~k~g 172 (697)
T PLN03081 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHV-ESSGFEPDQYMMNRVLLMHVKCG 172 (697)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHhCCCcchHHHHHHHHHHhcCC
Confidence 34444444 47888999998764 7899999999999984 6778899999988 56789999999999999999999
Q ss_pred ChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHH
Q 042941 80 KFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEH 159 (481)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 159 (481)
+++.|.++|++|.+ || ..+|+.++.+|++.|++++|+.+|++|.+.|+.|+..+|+.++.+|++.|..+.+.+
T Consensus 173 ~~~~A~~lf~~m~~----~~---~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 245 (697)
T PLN03081 173 MLIDARRLFDEMPE----RN---LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ 245 (697)
T ss_pred CHHHHHHHHhcCCC----CC---eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHH
Confidence 99999999999975 47 789999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc-cCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042941 160 LMFCN-KDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMG 238 (481)
Q Consensus 160 ~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 238 (481)
++..+ +.+..||..+||.++.+|+ +.|++++|.++|+.|.. +|..+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 246 l~~~~~~~g~~~d~~~~n~Li~~y~-k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 246 LHCCVLKTGVVGDTFVSCALIDMYS-KCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHhCCCccceeHHHHHHHHH-HCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 98774 5678899999999999999 99999999999999975 599999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 042941 239 IECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHA 318 (481)
Q Consensus 239 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 318 (481)
+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~ 396 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNA 396 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999964 79999999
Q ss_pred HHHHHhchh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcC
Q 042941 319 FLDIIRTGE---EVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISE-NGNGPDRSSYTALIHALFLNG 394 (481)
Q Consensus 319 li~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g 394 (481)
+|.+|++.| ++.+++++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++.+|++.|
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 999998875 5589999999999999999999999999999999999999999986 699999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHHH---HHHHHHhhcCccCCCCccccccccccchhhccCccccch
Q 042941 395 KLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVE---RQIASLKAHQPQSGQNTRVISKKSDQDREFLQQPETRRV 471 (481)
Q Consensus 395 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~r~~ 471 (481)
++++|.+++++| ++.|+..+|+.++..+...|..+ .+.+.+.+..|++...|..+.++|.+.|+|++|.++++.
T Consensus 477 ~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 477 LLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred CHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999876 58999999999999987666544 566777788899999999999999999999999999999
Q ss_pred hccc------ccccCC
Q 042941 472 VRHQ------GFSFWE 481 (481)
Q Consensus 472 ~~~~------~~~~~~ 481 (481)
|+++ |+||+|
T Consensus 554 m~~~g~~k~~g~s~i~ 569 (697)
T PLN03081 554 LKRKGLSMHPACTWIE 569 (697)
T ss_pred HHHcCCccCCCeeEEE
Confidence 9986 568874
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-57 Score=461.07 Aligned_cols=440 Identities=16% Similarity=0.180 Sum_probs=380.3
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCC
Q 042941 18 MRNKIEECGIKVSSELVSEVLSWV--RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGE 95 (481)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 95 (481)
++..+.+.+..++....+.++..+ .++.+.|.++|+.|. .||..+|+.+|.+|++.|++++|+++|++|...|
T Consensus 108 ~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g 182 (857)
T PLN03077 108 VCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG 182 (857)
T ss_pred HHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 333333334444444444555544 245566777777663 3688889999999999999999999999998888
Q ss_pred CCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhH
Q 042941 96 TGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSF 175 (481)
Q Consensus 96 ~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 175 (481)
+.|| ..+|+.++++|+..+++..+.+++..+.+.|+.|+..+++.|+.+|++.|+++.|.++|+++.. ||..+|
T Consensus 183 ~~Pd---~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~ 256 (857)
T PLN03077 183 VRPD---VYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISW 256 (857)
T ss_pred CCCC---hhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchh
Confidence 8888 8889999999888888888999999888889899999999999999999999999999999864 799999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 042941 176 NIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAK 255 (481)
Q Consensus 176 ~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (481)
|.+|.+|+ +.|++++|.++|++|...|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|++++.+|++
T Consensus 257 n~li~~~~-~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k 335 (857)
T PLN03077 257 NAMISGYF-ENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS 335 (857)
T ss_pred HHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHH---HHH
Q 042941 256 GRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEV---FGL 332 (481)
Q Consensus 256 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~---~~~ 332 (481)
.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.++. .++
T Consensus 336 ~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l 411 (857)
T PLN03077 336 LGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411 (857)
T ss_pred cCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHH
Confidence 9999999999999964 689999999999999999999999999999999999999999999999887654 788
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC------------------------------C------
Q 042941 333 LESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENG------------------------------N------ 376 (481)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------------------------------~------ 376 (481)
++.+.+.|+.|+..+|+.++.+|+++|++++|.++|++|.+.+ +
T Consensus 412 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t 491 (857)
T PLN03077 412 HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVT 491 (857)
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhH
Confidence 8888899999988888888888888888888888877664421 1
Q ss_pred -----------------------------------------------------------CCCHHHHHHHHHHHHhcCCHH
Q 042941 377 -----------------------------------------------------------GPDRSSYTALIHALFLNGKLE 397 (481)
Q Consensus 377 -----------------------------------------------------------~~~~~~~~~l~~~~~~~g~~~ 397 (481)
.||..+||++|.+|++.|+.+
T Consensus 492 ~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~ 571 (857)
T PLN03077 492 LIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGS 571 (857)
T ss_pred HHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHH
Confidence 356677888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHHHHHHHHHhhcC---c--cCCCCccccccccccchhhccCccccchh
Q 042941 398 EAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQIASLKAHQ---P--QSGQNTRVISKKSDQDREFLQQPETRRVV 472 (481)
Q Consensus 398 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~~~~~~a~~~r~~~ 472 (481)
+|.++|++|.+.|+.||..||+.++..+...|..+++.+.+.+.. + .+...|..+..++.+.|++++|.++-+.|
T Consensus 572 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 999999999999999999999999999999999998887776654 2 33457788899999999999999987777
Q ss_pred c
Q 042941 473 R 473 (481)
Q Consensus 473 ~ 473 (481)
.
T Consensus 652 ~ 652 (857)
T PLN03077 652 P 652 (857)
T ss_pred C
Confidence 3
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-56 Score=441.17 Aligned_cols=420 Identities=18% Similarity=0.229 Sum_probs=389.4
Q ss_pred HHHHHHhcC--CChhHHHHHHHhcCCCCCHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccC
Q 042941 4 LVDILREFS--HKRSEMRNKIEECGIKVSSELVSEVLSWV--RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVR 79 (481)
Q Consensus 4 ~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 79 (481)
++..+.+.+ ..+.+++..|.+.|+.|++.+++.++..+ .++.+.|.++|+.|. .||..+|+++|.+|++.|
T Consensus 129 ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g 203 (697)
T PLN03081 129 LVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAG 203 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCc
Confidence 334444444 25789999999999999999999999998 478899999999984 279999999999999999
Q ss_pred ChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHH
Q 042941 80 KFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEH 159 (481)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 159 (481)
++++|.++|++|.+.|+.|+ ..+|..++.+++..|+.+.+.+++..+.+.|+.||..+|+.|+++|++.|++++|.+
T Consensus 204 ~~~~A~~lf~~M~~~g~~p~---~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~ 280 (697)
T PLN03081 204 NYREAFALFREMWEDGSDAE---PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCC---hhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 042941 160 LMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGI 239 (481)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 239 (481)
+|+.+.. +|..+||.++.+|+ +.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+
T Consensus 281 vf~~m~~---~~~vt~n~li~~y~-~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~ 356 (697)
T PLN03081 281 VFDGMPE---KTTVAWNSMLAGYA-LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF 356 (697)
T ss_pred HHHhCCC---CChhHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 9998864 69999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 042941 240 ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAF 319 (481)
Q Consensus 240 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 319 (481)
.||..+|++++.+|++.|++++|.++|++|.+ ||..+||.+|.+|++.|+.++|.++|++|.+.|+.||..||+.+
T Consensus 357 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 432 (697)
T PLN03081 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432 (697)
T ss_pred CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 99999999999999999999999999999964 69999999999999999999999999999999999999999999
Q ss_pred HHHHhchhHH---HHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042941 320 LDIIRTGEEV---FGLLESMRK-MGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGK 395 (481)
Q Consensus 320 i~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (481)
+.+|++.+.. .++++.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|++|+.+|...|+
T Consensus 433 l~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~ 509 (697)
T PLN03081 433 LSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKN 509 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCC
Confidence 9999988654 788999976 599999999999999999999999999998765 577999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhhhhHHHHHHHHHhhcCcc
Q 042941 396 LEEAHQYYMEMKEKQLLPE-PKTDELLQDWSYNKQFVERQIASLKAHQPQ 444 (481)
Q Consensus 396 ~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 444 (481)
++.|..+++++.+ +.|+ ..+|..++..+.+.|..+++.+.+......
T Consensus 510 ~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 510 LELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred cHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999999874 5665 578999999999999999888777665543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-24 Score=225.07 Aligned_cols=414 Identities=12% Similarity=0.013 Sum_probs=215.9
Q ss_pred cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHH
Q 042941 43 NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRA 122 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a 122 (481)
++.+.|..+++.+.... +++..++..+...+...|++++|...|+++.+. ++.+...+..+...+...|++++|
T Consensus 445 ~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~~~A 518 (899)
T TIGR02917 445 GQFDKALAAAKKLEKKQ--PDNASLHNLLGAIYLGKGDLAKAREAFEKALSI----EPDFFPAAANLARIDIQEGNPDDA 518 (899)
T ss_pred CCHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 45555555555554322 234556666666666666666666666666554 222245555566666666666666
Q ss_pred HHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 042941 123 INAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR 202 (481)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 202 (481)
...|+.+.+.+ +.+..++..+...+.+.|+.++|..++.++....+.+...+..+...+. ..|++++|..+++.+...
T Consensus 519 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 519 IQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYL-GKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHH-HCCCHHHHHHHHHHHHHc
Confidence 66666665543 2345555566666666666666666665554444445555555566666 566666666666665543
Q ss_pred CCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHH
Q 042941 203 GICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYN 282 (481)
Q Consensus 203 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 282 (481)
. +.+..+|..+..++...|++++|...|+.+.+.. +.+...+..+..++...|++++|..+|+++.+.... +..++.
T Consensus 597 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 673 (899)
T TIGR02917 597 A-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQI 673 (899)
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHH
Confidence 2 2244556666666666666666666666665543 334455555666666666666666666665554322 445555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 042941 283 SLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEE---VFGLLESMRKMGCQPTNDTYIMLIKKFSRWR 359 (481)
Q Consensus 283 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 359 (481)
.+...+...|++++|..+++.+.+.+. ++...+..+...+...++ +...++.+.+. .|+..++..+...+.+.|
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 750 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASG 750 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCC
Confidence 555555556666666666655555432 233334444444433322 23333333332 233344444555555555
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhH--HHHHHHH
Q 042941 360 QFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQF--VERQIAS 437 (481)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~--~~~~~~~ 437 (481)
++++|.+.++.+.+.. +.+...+..+...|...|++++|..+|+++.+.. ++++..+..+...+...+. +...++.
T Consensus 751 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~A~~~~~~ 828 (899)
T TIGR02917 751 NTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKDPRALEYAEK 828 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 5555555555555432 2244455555555555555555555555555432 2233333333333322222 2222333
Q ss_pred HhhcCccCCCCccccccccccchhhccCccccchh
Q 042941 438 LKAHQPQSGQNTRVISKKSDQDREFLQQPETRRVV 472 (481)
Q Consensus 438 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~r~~~ 472 (481)
+.+..|+++..+..++.+|...|++++|.+..+.+
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 863 (899)
T TIGR02917 829 ALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKA 863 (899)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344444444444555555555555555444433
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-24 Score=225.18 Aligned_cols=441 Identities=11% Similarity=0.053 Sum_probs=357.9
Q ss_pred ChhHHHHHHHhcCCCCCHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 042941 14 KRSEMRNKIEECGIKVSSELVSEVLSWV--RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEM 91 (481)
Q Consensus 14 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 91 (481)
.+..++..+... .+.++..+..+...+ .++.+.|...|+.+.... +.+...+..+...+...|++++|.+.|+.+
T Consensus 449 ~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 525 (899)
T TIGR02917 449 KALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKV 525 (899)
T ss_pred HHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 445555555432 233444554444444 578899999999986543 246778888999999999999999999999
Q ss_pred hcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCc
Q 042941 92 RGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFN 171 (481)
Q Consensus 92 ~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 171 (481)
.+. ++.+..++..+...+...|+.++|...++++.+.+ +.+...+..+...+...|++++|..+++.+....+.+
T Consensus 526 ~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 600 (899)
T TIGR02917 526 LTI----DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDS 600 (899)
T ss_pred HHh----CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 876 33347889999999999999999999999998765 3466778889999999999999999999987777888
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042941 172 TKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIH 251 (481)
Q Consensus 172 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 251 (481)
...|..+...+. ..|++++|...|+.+.+... .+...+..+..++.+.|++++|...++.+.+.. +.+..++..+..
T Consensus 601 ~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 677 (899)
T TIGR02917 601 PEAWLMLGRAQL-AAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQ 677 (899)
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 899999999999 99999999999999987643 356778889999999999999999999998874 556889999999
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHH--
Q 042941 252 ALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEV-- 329 (481)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~-- 329 (481)
.+...|++++|..+++.+.+.++ .+...+..+...+...|++++|...|+.+...+ |+..++..+...+...++.
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHH
Confidence 99999999999999999998764 377788889999999999999999999998875 4446666677777665544
Q ss_pred -HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 330 -FGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 330 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
.+.++.+.+.. +.+...+..+...|...|++++|...|+++.+... ++...++.+...+...|+ .+|+.+++++.+
T Consensus 755 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 755 AVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 55555555543 56788899999999999999999999999998753 578899999999999999 889999999987
Q ss_pred CCCCCC-HhHHHHHHHHHhhhhH---HHHHHHHHhhcCccCCCCccccccccccchhhccCccccchhc
Q 042941 409 KQLLPE-PKTDELLQDWSYNKQF---VERQIASLKAHQPQSGQNTRVISKKSDQDREFLQQPETRRVVR 473 (481)
Q Consensus 409 ~~~~p~-~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~r~~~~ 473 (481)
. .|+ +.++..+...+...|. +.+.++.+.+..|.++..+..++.++...|++++|.++.+.|.
T Consensus 832 ~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 832 L--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred h--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5 343 3444444444444444 4455667777778888999999999999999999998776653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-22 Score=184.14 Aligned_cols=303 Identities=14% Similarity=0.029 Sum_probs=243.1
Q ss_pred HHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC---HHhHHHHHHHH
Q 042941 72 IAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG---IEDFQGLLSAL 148 (481)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~ 148 (481)
...+...|++++|...|+++.+. ++.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKV----DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 44556788999999999999886 334477888899999999999999999998887532221 24577888899
Q ss_pred HcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccH----HhHHHHHHHHHhcCCH
Q 042941 149 CRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDV----VSFSCIISCYSKARNL 224 (481)
Q Consensus 149 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~ll~~~~~~~~~ 224 (481)
...|+++.|..+|+++....+++..+++.++..+. ..|++++|.+.++.+...+..++. ..+..+...+.+.|++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQ-QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHH-HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 99999999999998876656677888999999999 899999999999998876544322 2345677778889999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 225 HKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEM 304 (481)
Q Consensus 225 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 304 (481)
++|...|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......+++.+..+|...|++++|...++.+
T Consensus 197 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 197 DAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999988764 44566778888899999999999999999987644333566788889999999999999999888
Q ss_pred HHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 042941 305 LQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYT 384 (481)
Q Consensus 305 ~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 384 (481)
.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...++
T Consensus 276 ~~~----------------------------------~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~ 319 (389)
T PRK11788 276 LEE----------------------------------YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFH 319 (389)
T ss_pred HHh----------------------------------CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHH
Confidence 764 234445577888899999999999999988875 58888888
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHh
Q 042941 385 ALIHALFL---NGKLEEAHQYYMEMKEKQLLPEPK 416 (481)
Q Consensus 385 ~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~ 416 (481)
.++..+.. .|+.++++.++++|.++++.|++.
T Consensus 320 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 320 RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 88887765 568999999999999888777775
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-20 Score=177.03 Aligned_cols=294 Identities=12% Similarity=0.065 Sum_probs=233.8
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCC
Q 042941 20 NKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPS 99 (481)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 99 (481)
+..++....++...+..+.....++.+.|+..|..+.... +.+..++..+...+...|++++|..+++.+...+..++
T Consensus 26 ~~~~~~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 103 (389)
T PRK11788 26 QDQQKESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTR 103 (389)
T ss_pred hhhhhhhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCH
Confidence 3344555566666677777767789999999999997543 24677899999999999999999999999988643222
Q ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCc-----hHh
Q 042941 100 LVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFN-----TKS 174 (481)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~ 174 (481)
.....++..+...+...|++++|+.+|+++.+.. +++..++..++..+...|++++|.+.++.+....+.+ ...
T Consensus 104 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 182 (389)
T PRK11788 104 EQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHF 182 (389)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 2223578888999999999999999999998753 4567889999999999999999999998865432222 124
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042941 175 FNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALA 254 (481)
Q Consensus 175 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (481)
+..+...+. ..|++++|...|+++.+.... +...+..+...+.+.|++++|.++++++...+......++..++.+|.
T Consensus 183 ~~~la~~~~-~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~ 260 (389)
T PRK11788 183 YCELAQQAL-ARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQ 260 (389)
T ss_pred HHHHHHHHH-hCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH
Confidence 556777778 899999999999999876432 456778888999999999999999999997642223467888999999
Q ss_pred cCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042941 255 KGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDI 322 (481)
Q Consensus 255 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 322 (481)
..|++++|...++++.+.. |+...+..+...+.+.|++++|..+++++.+. .|+..++..++..
T Consensus 261 ~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~ 324 (389)
T PRK11788 261 ALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDY 324 (389)
T ss_pred HcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHH
Confidence 9999999999999998864 56667788999999999999999999998876 3555555544443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-17 Score=175.53 Aligned_cols=417 Identities=10% Similarity=0.018 Sum_probs=284.1
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHH------------HHH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTL------------LIL 109 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~------------~~l 109 (481)
.++.++|+..|+...... +.+..++..+..++.+.|++++|+..|++..+.. |+......+ ...
T Consensus 282 ~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHH
Confidence 477788888888886543 2367888888888888899999999888887652 322111112 122
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCH
Q 042941 110 IRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSS 189 (481)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (481)
...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|++.....|.+...+..+...+. .++.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~--~~~~ 434 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR--QQSP 434 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--hcCH
Confidence 345667888899999998888764 2356667778888888899999998888866555556666666666654 4567
Q ss_pred HHHHHHHHHHHhcCCc--------ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHH
Q 042941 190 REAERVWMEMSQRGIC--------YDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKD 261 (481)
Q Consensus 190 ~~a~~~~~~~~~~g~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (481)
++|..+++.+...... .....+..+...+...|++++|.+.|++..+.. +-+...+..+...|.+.|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 8888887765432100 012234556677888899999999999988864 3456677788888999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---------HHHHHHHhchhHHHHH
Q 042941 262 AISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTY---------HAFLDIIRTGEEVFGL 332 (481)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~---------~~li~~~~~~~~~~~~ 332 (481)
|...++++.+.... +...+..+...+...++.++|...++.+......++...+ ......+...++..+.
T Consensus 514 A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 99999998875433 4444444555567788999999988876544332222211 1222334344443333
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042941 333 LESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLL 412 (481)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 412 (481)
...+.. .+.+...+..+...+.+.|++++|+..|++..+... .+...+..+...|...|++++|++.++...+. .
T Consensus 593 ~~~l~~--~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~ 667 (1157)
T PRK11447 593 EALLRQ--QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPAT--A 667 (1157)
T ss_pred HHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--C
Confidence 333332 345666777888899999999999999999988643 36778889999999999999999999987753 4
Q ss_pred CCH-hHHHHHHHHHhhhhHHHHHH---HHHhhcCccCCC------CccccccccccchhhccCccccchh
Q 042941 413 PEP-KTDELLQDWSYNKQFVERQI---ASLKAHQPQSGQ------NTRVISKKSDQDREFLQQPETRRVV 472 (481)
Q Consensus 413 p~~-~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~r~~~ 472 (481)
|+. .+...+...+...|..+++. +.+.+..|..+. .+..++.++...|++++|.+..+..
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 543 33333444444555555555 444444444433 4445688889999999988875543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-17 Score=162.10 Aligned_cols=321 Identities=9% Similarity=-0.005 Sum_probs=161.0
Q ss_pred cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHH
Q 042941 43 NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRA 122 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a 122 (481)
++.+.|+.++........ -+...+..++......|+++.|...|+.+.+. +|.+...+..+...+...|++++|
T Consensus 56 g~~~~A~~l~~~~l~~~p--~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~----~P~~~~a~~~la~~l~~~g~~~~A 129 (656)
T PRK15174 56 DETDVGLTLLSDRVLTAK--NGRDLLRRWVISPLASSQPDAVLQVVNKLLAV----NVCQPEDVLLVASVLLKSKQYATV 129 (656)
T ss_pred CCcchhHHHhHHHHHhCC--CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCCHHHH
Confidence 444555555555443321 22333444444444555555555555555544 222344555555555555555555
Q ss_pred HHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 042941 123 INAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR 202 (481)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 202 (481)
+..++++.+.. +.+...+..+..++...|++++|...+..+....|.+...+..+. .+. ..|++++|...++.+...
T Consensus 130 i~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~-~~g~~~eA~~~~~~~l~~ 206 (656)
T PRK15174 130 ADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFL-NKSRLPEDHDLARALLPF 206 (656)
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHH-HcCCHHHHHHHHHHHHhc
Confidence 55555555432 123444455555555555555555555543322222333332222 234 455555555555555444
Q ss_pred CCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHH----HHHHHHHHHHcCCCCCh
Q 042941 203 GICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKD----AISLMKSMEEKGVAPNV 278 (481)
Q Consensus 203 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~~~~ 278 (481)
...++...+..+...+...|++++|...++...... +.+...+..+...+...|++++ |...|++..+..+. +.
T Consensus 207 ~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~ 284 (656)
T PRK15174 207 FALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NV 284 (656)
T ss_pred CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CH
Confidence 222222333333444555555555555555555443 2334444555555555555553 45555555544322 34
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 042941 279 VTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRW 358 (481)
Q Consensus 279 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 358 (481)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l~---------------------------------P~~~~a~~~La~~l~~~ 331 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLATH---------------------------------PDLPYVRAMYARALRQV 331 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------------------CCCHHHHHHHHHHHHHC
Confidence 455555555555555555555555554432 22334455566666677
Q ss_pred CChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 359 RQFGNVFKVWNEISENGNGPDR-SSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 359 g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
|++++|...++++...+ |+. ..+..+..++...|+.++|...|++..+.
T Consensus 332 G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 332 GQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred CCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77777777776666542 332 22333455566677777777777766554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-17 Score=160.98 Aligned_cols=336 Identities=10% Similarity=-0.007 Sum_probs=256.8
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHH
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGL 144 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 144 (481)
..-..-++..+.+.|++++|..+++..... .+.....+..++.+....|+++.|+..++++.+.. +.+...+..+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~----~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~l 116 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLT----AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLV 116 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHh----CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 334556677788999999999999999887 33336677777788888999999999999998865 3356778888
Q ss_pred HHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCH
Q 042941 145 LSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNL 224 (481)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~ 224 (481)
..++...|++++|...+++.....|.+...+..+...+. ..|++++|...++.+......+ ...+..+ ..+...|++
T Consensus 117 a~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~-~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~ 193 (656)
T PRK15174 117 ASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLV-LMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRL 193 (656)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCH
Confidence 899999999999999999876666677888888888888 8999999999999887664432 2233333 347888999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH----HHHH
Q 042941 225 HKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDE----ARQA 300 (481)
Q Consensus 225 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~ 300 (481)
++|...++.+.+....++...+..+..++...|++++|...++++.+.... +...+..+...+...|++++ |...
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 999999999877643344455566677888999999999999999887543 67777888889999999886 6777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 042941 301 FDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDR 380 (481)
Q Consensus 301 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 380 (481)
|+...+.. +.+...+..+...+...|++++|...+++..+... .+.
T Consensus 273 ~~~Al~l~---------------------------------P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~ 318 (656)
T PRK15174 273 WRHALQFN---------------------------------SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLP 318 (656)
T ss_pred HHHHHhhC---------------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCH
Confidence 77766542 33456788889999999999999999999988643 356
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH-HHHHHHhhhhHHHHHH---HHHhhcCccC
Q 042941 381 SSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDE-LLQDWSYNKQFVERQI---ASLKAHQPQS 445 (481)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~~~~~~~~---~~~~~~~~~~ 445 (481)
..+..+..++.+.|++++|+..|+++... .|+...+. .+...+...|..+++. +.+.+..|+.
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 67888899999999999999999999875 45543332 2333444555555444 4555555654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=8e-17 Score=158.90 Aligned_cols=384 Identities=9% Similarity=-0.032 Sum_probs=203.1
Q ss_pred cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHH
Q 042941 43 NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRA 122 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a 122 (481)
++++.|+..|+..... .|+...|..+..+|.+.|++++|++.++...+. ++....++..+..++...|++++|
T Consensus 141 ~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l----~p~~~~a~~~~a~a~~~lg~~~eA 213 (615)
T TIGR00990 141 KDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALEL----DPDYSKALNRRANAYDGLGKYADA 213 (615)
T ss_pred CCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 6778888888877543 356677888888888888888888888888775 333467778888888888888888
Q ss_pred HHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCC----------------------------Cc-hH
Q 042941 123 INAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFP----------------------------FN-TK 173 (481)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------------------~~-~~ 173 (481)
+.-|......+...+.. ...++..+........+...+..-....+ +. ..
T Consensus 214 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (615)
T TIGR00990 214 LLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGN 292 (615)
T ss_pred HHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccccc
Confidence 87776554432111111 11111111110011111111111000000 00 00
Q ss_pred hHHHHHHHHH--HhcCCHHHHHHHHHHHHhcC-Ccc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 042941 174 SFNIILNGWC--NIIGSSREAERVWMEMSQRG-ICY-DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAV 249 (481)
Q Consensus 174 ~~~~l~~~~~--~~~~~~~~a~~~~~~~~~~g-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 249 (481)
.+..+...+. ...+++++|...|+...+.+ ..| ....+..+...+...|++++|...++...... +.+...|..+
T Consensus 293 ~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~l 371 (615)
T TIGR00990 293 GQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKR 371 (615)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHH
Confidence 0000000000 02356777777777777654 122 33456666677777788888888887777653 2335567777
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhch---
Q 042941 250 IHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTG--- 326 (481)
Q Consensus 250 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--- 326 (481)
...+...|++++|...|+++.+.... +...|..+...+...|++++|...|++..+.... +...+..+...+.+.
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCH
Confidence 77777778888888888777765433 5666777777777778888888888777665311 223333333333222
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH------HHHHHHHHHhcCCHHHHH
Q 042941 327 EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSS------YTALIHALFLNGKLEEAH 400 (481)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~A~ 400 (481)
+++...++...+.. +.+...++.+...+...|++++|.+.|++........+... ++..+..+...|++++|.
T Consensus 450 ~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~ 528 (615)
T TIGR00990 450 ASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAE 528 (615)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHH
Confidence 23333333333321 22344555555555555666666666555554321111110 111111222345555666
Q ss_pred HHHHHHHHCCCCCCH-hHHHHHHHHHhhhhHHHHHHHHHhh
Q 042941 401 QYYMEMKEKQLLPEP-KTDELLQDWSYNKQFVERQIASLKA 440 (481)
Q Consensus 401 ~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~~~~~~~~ 440 (481)
+++++.... .|+. ..+..+...+...|..+++++.+.+
T Consensus 529 ~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 529 NLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 655555443 2322 2333444444444444444444333
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.5e-16 Score=161.22 Aligned_cols=411 Identities=11% Similarity=0.005 Sum_probs=286.5
Q ss_pred ChhHHHHHHHhcCCCCCHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCCCCCCHHHHH------------HHHHHHhccC
Q 042941 14 KRSEMRNKIEECGIKVSSELVSEVLSWV--RNDWEAAFTFFLWAGKQSGYAHSTREYH------------TMIAILGKVR 79 (481)
Q Consensus 14 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------~li~~~~~~g 79 (481)
.|...++...+... -++..+..+-..+ .++.++|+..|+......+-.++...|. .....+.+.|
T Consensus 287 ~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g 365 (1157)
T PRK11447 287 KAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKAN 365 (1157)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCC
Confidence 45555555443322 1344433333333 5788999999999875443223322222 2244677899
Q ss_pred ChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHH
Q 042941 80 KFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEH 159 (481)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 159 (481)
++++|...|+++.+. ++.+..++..+...+...|++++|++.|+++.+.. +.+...+..+...+. .++.++|..
T Consensus 366 ~~~eA~~~~~~Al~~----~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~ 439 (1157)
T PRK11447 366 NLAQAERLYQQARQV----DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALA 439 (1157)
T ss_pred CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHH
Confidence 999999999999987 33447788889999999999999999999999764 234566777777775 457899999
Q ss_pred HHhhccCCCCC---------chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHH
Q 042941 160 LMFCNKDVFPF---------NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRL 230 (481)
Q Consensus 160 ~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 230 (481)
+++.+....+. ....+..+...+. ..|++++|+..|++..+.... +...+..+...|.+.|++++|...
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~-~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALE-NQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88765432111 1223455667777 899999999999999887543 556777888999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChh---------hHHHHHHHHHhcCCHHHHHHHH
Q 042941 231 FDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVV---------TYNSLIKPLCKARKLDEARQAF 301 (481)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---------~~~~li~~~~~~g~~~~a~~~~ 301 (481)
++.+.+.. +.+...+..+...+...++.++|...++.+......++.. .+..+...+...|++++|..++
T Consensus 518 l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 99998753 3455555556666788999999999998875432222221 1234566788899999999998
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhch---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 042941 302 DEMLQRGISPTIRTYHAFLDIIRTG---EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGP 378 (481)
Q Consensus 302 ~~m~~~~~~p~~~~~~~li~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 378 (481)
+. .+++...+..+...+... .++...++...+.. +.+...+..+...+...|++++|++.++...+... .
T Consensus 597 ~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p-~ 669 (1157)
T PRK11447 597 RQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN-D 669 (1157)
T ss_pred Hh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-C
Confidence 82 123444445555555444 45566666666653 45678889999999999999999999998876432 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C---CHhHHHHHHHHHhhhhHHHHHHHHHhhc
Q 042941 379 DRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLL--P---EPKTDELLQDWSYNKQFVERQIASLKAH 441 (481)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~--p---~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 441 (481)
+...+..+..++...|++++|.++++++....-. | +...+..+...+...|..+++++.+++.
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566777888999999999999999999875322 2 1134444455566666666666554443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-17 Score=148.48 Aligned_cols=374 Identities=13% Similarity=0.095 Sum_probs=286.9
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhH-H
Q 042941 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDF-Q 142 (481)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~ 142 (481)
-..+|+.+..++-..|++++|+.+|+.+.+. +|+ ....|..+..++...|+.+.|.+.|....+.+ |+.... .
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~--fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s 188 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIEL--KPK--FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARS 188 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--Cch--hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhc
Confidence 4678888999999999999999999999987 333 47889999999999999999999999988754 555433 3
Q ss_pred HHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc-HHhHHHHHHHHHhc
Q 042941 143 GLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYD-VVSFSCIISCYSKA 221 (481)
Q Consensus 143 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~ 221 (481)
.+...+...|++++|...+.+.....+--...|+-|.-.+- ..|+...|++.|++.... +|+ ...|-.|...|...
T Consensus 189 ~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~-~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~ 265 (966)
T KOG4626|consen 189 DLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFN-AQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEA 265 (966)
T ss_pred chhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHh-hcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHH
Confidence 45566667888999999887755544545567888888877 899999999999998876 333 45788889999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 042941 222 RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAF 301 (481)
Q Consensus 222 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 301 (481)
+.+++|...|....... +-....+..+...|...|.++.|...|++..+..+. -...|+.|..++-..|++.+|.+.|
T Consensus 266 ~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 266 RIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred hcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHH
Confidence 99999999998887753 345667888888899999999999999999886443 4568999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhchh---HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 042941 302 DEMLQRGISPTIRTYHAFLDIIRTGE---EVFGLLESMRKMGCQPT-NDTYIMLIKKFSRWRQFGNVFKVWNEISENGNG 377 (481)
Q Consensus 302 ~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 377 (481)
.+....... .....+.|-..+...+ ++..++....+ +.|. ...++.|...|-.+|++++|+..+++..+ +.
T Consensus 344 nkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~ 418 (966)
T KOG4626|consen 344 NKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IK 418 (966)
T ss_pred HHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cC
Confidence 988775322 2345566666665544 44444444433 2333 34678888899999999999999998887 45
Q ss_pred CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhhhhHHHH---HHHHHhhcCccCCCCcccc
Q 042941 378 PDR-SSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEP-KTDELLQDWSYNKQFVER---QIASLKAHQPQSGQNTRVI 452 (481)
Q Consensus 378 ~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l 452 (481)
|+. ..|+.+...|-..|+.+.|++.+.+.+. +.|.. ..++-|...+...|...+ ..+......||.|+++-.+
T Consensus 419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred chHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence 664 4888899999999999999999998886 45654 345556666666665554 4467778888988888776
Q ss_pred ccc
Q 042941 453 SKK 455 (481)
Q Consensus 453 ~~~ 455 (481)
.-.
T Consensus 497 lh~ 499 (966)
T KOG4626|consen 497 LHC 499 (966)
T ss_pred HHH
Confidence 644
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.1e-15 Score=148.87 Aligned_cols=408 Identities=11% Similarity=0.019 Sum_probs=276.9
Q ss_pred CCCCHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHH
Q 042941 27 IKVSSELVSEVLSWV--RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQ 104 (481)
Q Consensus 27 ~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 104 (481)
.+.++..+..-+... .++.++|++++....... +.+...+..+...+...|++++|..+|++..+. ++.+..
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~----~P~~~~ 84 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL----EPQNDD 84 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHH
Confidence 345555555554443 588888998888875322 356667889999999999999999999998876 344477
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHH
Q 042941 105 TLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCN 184 (481)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 184 (481)
.+..+...+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++....|.+...+..+...+.
T Consensus 85 a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~- 161 (765)
T PRK10049 85 YQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR- 161 (765)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 77888888899999999999999988764 33555 7788888999999999999999877767777777777777777
Q ss_pred hcCCHHHHHHHHHHHHhcCCcccH------HhHHHHHHHHH-----hcCCH---HHHHHHHHHHHHc-CCCCCHH-HH--
Q 042941 185 IIGSSREAERVWMEMSQRGICYDV------VSFSCIISCYS-----KARNL---HKVLRLFDQMKRM-GIECDRK-VY-- 246 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~~~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~-- 246 (481)
..+..+.|+..++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+
T Consensus 162 ~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~ 238 (765)
T PRK10049 162 NNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR 238 (765)
T ss_pred HCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH
Confidence 88899989988876654 2221 11122222222 12233 6778888887754 1122221 11
Q ss_pred --HHHHHHHHcCCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHH
Q 042941 247 --NAVIHALAKGRLVKDAISLMKSMEEKGVA-PNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISP---TIRTYHAFL 320 (481)
Q Consensus 247 --~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li 320 (481)
...+..+...|++++|...|+.+.+.+.+ |+. .-..+..+|...|++++|+.+|+++.+..... .......+.
T Consensus 239 a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 239 ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 11133456778899999999998877532 322 22235668888999999999999887653211 123344444
Q ss_pred HHHhch---hHHHHHHHHHHHcC-----------CCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 042941 321 DIIRTG---EEVFGLLESMRKMG-----------CQPT---NDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSY 383 (481)
Q Consensus 321 ~~~~~~---~~~~~~~~~~~~~~-----------~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 383 (481)
.++... +++...++.+.+.. -.|+ ...+..+...+...|++++|++.++++.... +.+...+
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~ 396 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLR 396 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 445443 44455566555442 1123 2345567778889999999999999988764 3467788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH----HHhhhhHHHHHHHHHhhcCccCCCCcc
Q 042941 384 TALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQD----WSYNKQFVERQIASLKAHQPQSGQNTR 450 (481)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (481)
..+...+...|++++|++.+++... ..|+...+..... ...+-..++..++.+.+..|+++.+..
T Consensus 397 ~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 397 IDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 8899999999999999999999887 4577644332222 234556666777888888888765443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-16 Score=143.75 Aligned_cols=412 Identities=13% Similarity=0.102 Sum_probs=309.7
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
.++++.|++.....-.+.+ .+....-.+-.++.+..+.+....--....+. ++....+|..+...+-..|+++.
T Consensus 61 ~gd~~~a~~h~nmv~~~d~--t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~----~~q~ae~ysn~aN~~kerg~~~~ 134 (966)
T KOG4626|consen 61 GGDYKQAEKHCNMVGQEDP--TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK----NPQGAEAYSNLANILKERGQLQD 134 (966)
T ss_pred ccCHHHHHHHHhHhhccCC--Ccccceeeehhhhhcccchhhhhhhhhhhhhc----cchHHHHHHHHHHHHHHhchHHH
Confidence 3566677766655533332 12233333444556666666655544444443 34447899999999999999999
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQ 201 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 201 (481)
|+..|+.+.+... -....|..+..++...|+.+.|.+.|....... |+.....+-+..+.+..|+.++|...|.+..+
T Consensus 135 al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 135 ALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 9999999998652 257889999999999999999999998755433 34333333333333378999999999988877
Q ss_pred cCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhH
Q 042941 202 RGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTY 281 (481)
Q Consensus 202 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 281 (481)
.... -...|+.|...+..+|+...|+.-|++..+.+ +--...|-.|...|...+.++.|...|.+.....+. ....+
T Consensus 213 ~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~ 289 (966)
T KOG4626|consen 213 TQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAH 289 (966)
T ss_pred hCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhc
Confidence 6322 34578889999999999999999999998864 334568999999999999999999999998876443 56778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhchhHH---HHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 042941 282 NSLIKPLCKARKLDEARQAFDEMLQRGISPT-IRTYHAFLDIIRTGEEV---FGLLESMRKMGCQPTNDTYIMLIKKFSR 357 (481)
Q Consensus 282 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 357 (481)
..+...|...|..+.|+..|++..+.. |+ ...|+.+..++...|++ ...+....... +-.....+.|...|..
T Consensus 290 gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYRE 366 (966)
T ss_pred cceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 888888999999999999999998864 44 46788888888777766 44444444432 2335678889999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhhhhHHHHHH
Q 042941 358 WRQFGNVFKVWNEISENGNGPD-RSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEP-KTDELLQDWSYNKQFVERQI 435 (481)
Q Consensus 358 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~~~ 435 (481)
.|.++.|..+|....+. .|. ...++.|...|-+.|++++|+..|++... +.|+. ..++-+-..+...|....++
T Consensus 367 ~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred hccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHH
Confidence 99999999999998874 344 34788999999999999999999999885 67776 34555555666666666555
Q ss_pred ---HHHhhcCccCCCCccccccccccchhhccCccccch
Q 042941 436 ---ASLKAHQPQSGQNTRVISKKSDQDREFLQQPETRRV 471 (481)
Q Consensus 436 ---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~r~~ 471 (481)
....+.+|...++...|+.+|...|+..+|+...+.
T Consensus 443 q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~ 481 (966)
T KOG4626|consen 443 QCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRT 481 (966)
T ss_pred HHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHH
Confidence 567778888889999999999999998888766543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-14 Score=144.05 Aligned_cols=382 Identities=11% Similarity=0.004 Sum_probs=224.7
Q ss_pred ChhHHHHHHHhcCCCCCHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 042941 14 KRSEMRNKIEECGIKVSSELVSEVLSWV--RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEM 91 (481)
Q Consensus 14 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 91 (481)
.|...+....+ ..|++..+..+-..+ .++++.|+..+....... +.+..+|..+..++...|++++|..-|...
T Consensus 145 ~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~ 220 (615)
T TIGR00990 145 KAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTAS 220 (615)
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44455544443 345555555554444 488999999999987543 246789999999999999999999888765
Q ss_pred hcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---------------------------cCCCCCH-HhHHH
Q 042941 92 RGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKR---------------------------FKFAVGI-EDFQG 143 (481)
Q Consensus 92 ~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---------------------------~~~~~~~-~~~~~ 143 (481)
....-. + ......++..+........+...++.-.. ....+.. ..+..
T Consensus 221 ~~~~~~-~---~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (615)
T TIGR00990 221 CIIDGF-R---NEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQ 296 (615)
T ss_pred HHhCCC-c---cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHH
Confidence 443110 1 11111111111110001111111100000 0000000 00000
Q ss_pred HHHH---HHcCCChhhHHHHHhhccCC---CCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHH
Q 042941 144 LLSA---LCRYKNVQDAEHLMFCNKDV---FPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISC 217 (481)
Q Consensus 144 ll~~---~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 217 (481)
+... ....+++++|.+.|+..... .+.....++.+...+. ..|++++|+..++........ ....|..+...
T Consensus 297 l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~-~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~ 374 (615)
T TIGR00990 297 LGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKC-LKGKHLEALADLSKSIELDPR-VTQSYIKRASM 374 (615)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHH
Confidence 1000 01235677777777664321 2334455666666666 777777777777777665221 34466666777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 042941 218 YSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEA 297 (481)
Q Consensus 218 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 297 (481)
+...|++++|...|+...+.. +.+..+|..+...+...|++++|...|++..+..+. +...+..+...+.+.|++++|
T Consensus 375 ~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 375 NLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASS 452 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHH
Confidence 777777777777777776653 445667777777777777777777777777766433 455666677777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhchh---HHHHHHHHHHHcCCCC-----CH-HHHHHHHHHHHhcCChhHHHHHH
Q 042941 298 RQAFDEMLQRGISPTIRTYHAFLDIIRTGE---EVFGLLESMRKMGCQP-----TN-DTYIMLIKKFSRWRQFGNVFKVW 368 (481)
Q Consensus 298 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~~~~~~~~~~~~~-----~~-~~~~~l~~~~~~~g~~~~a~~~~ 368 (481)
+..|++..+.. +.+...+..+-..+...+ ++...++...+..... +. ..++..+..+...|++++|.+++
T Consensus 453 ~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~ 531 (615)
T TIGR00990 453 MATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531 (615)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 77777776542 113444444444444433 3344444444332111 11 11222233344569999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 369 NEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
++...... .+...+..+...+.+.|++++|+++|++..+.
T Consensus 532 ~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 532 EKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99887643 34557889999999999999999999998764
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-14 Score=124.25 Aligned_cols=430 Identities=14% Similarity=0.117 Sum_probs=224.3
Q ss_pred HHHHHHhcC-CChhHHHHHHHhcCCCCCHHHHHHHHHHhh--cCHHHHHHHHHHhh--hCCC------------------
Q 042941 4 LVDILREFS-HKRSEMRNKIEECGIKVSSELVSEVLSWVR--NDWEAAFTFFLWAG--KQSG------------------ 60 (481)
Q Consensus 4 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~a~~~~~~~~--~~~~------------------ 60 (481)
|..++++-. .++-.+.+.|++.|++.++..-..++...+ +..+--..-++|.. +..|
T Consensus 122 L~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E 201 (625)
T KOG4422|consen 122 LLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFE 201 (625)
T ss_pred HHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHh
Confidence 334444433 477888999999999999999888877642 22111111112221 1111
Q ss_pred -CCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHH
Q 042941 61 -YAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIE 139 (481)
Q Consensus 61 -~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 139 (481)
.+-+..+|..+|.++++.-..+.|.++|++......+.+ ..+||.+|.+-.-.. ..++..+|......||..
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~---~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~ 274 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVY---REAFNGLIGASSYSV----GKKLVAEMISQKMTPNLF 274 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheee---HHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchH
Confidence 112455666666666666666666666666655555555 566666655432221 145556666555666666
Q ss_pred hHHHHHHHHHcCCChhhHHHHH----hhccC-CCCCchHhHHHHHHHHHHhcCCHHH-HHHHHHHHHhc--C--Cc---c
Q 042941 140 DFQGLLSALCRYKNVQDAEHLM----FCNKD-VFPFNTKSFNIILNGWCNIIGSSRE-AERVWMEMSQR--G--IC---Y 206 (481)
Q Consensus 140 ~~~~ll~~~~~~~~~~~a~~~~----~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~-a~~~~~~~~~~--g--~~---~ 206 (481)
|+|.++.+..+.|+++.|...+ -+++. |+.|...+|..+|..++ +.++..+ +..++.++... | ++ |
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~-re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFK-RESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhc-ccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 6666666666666655544333 22332 45566666666666666 4444422 33333333221 1 11 1
Q ss_pred -cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh
Q 042941 207 -DVVSFSCIISCYSKARNLHKVLRLFDQMKRMG----IECD---RKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNV 278 (481)
Q Consensus 207 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 278 (481)
|..-|...|..|.+..+.+-|.++..-+.... +.|+ ..-|..+....++....+.-...|+.|.-.-.-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 22334555566666666665555544333211 1222 123344555555556666666666666655555666
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchh---------HH---------------HHHHH
Q 042941 279 VTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGE---------EV---------------FGLLE 334 (481)
Q Consensus 279 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---------~~---------------~~~~~ 334 (481)
.+...++++.--.|.++-.-+++..++..|..-....-.-++..+++.. +. .....
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~ 513 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPI 513 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 6666666766666777666666666666553333322222222222210 00 11111
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 335 SMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGN----GPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQ 410 (481)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 410 (481)
.+.+ ...+....+.+.-.+.|.|..++|.+++..+.+.+- .|......-++..-.+......|..+++-|...+
T Consensus 514 R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 514 RQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 2222 233444556666667777777777777777754321 2333333355566666777777777777775554
Q ss_pred CCCCHhHHHHHHHHHhhhhHHHHHHHHHhhcCc
Q 042941 411 LLPEPKTDELLQDWSYNKQFVERQIASLKAHQP 443 (481)
Q Consensus 411 ~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 443 (481)
...-...-+.+...+.-.+...+++..+....|
T Consensus 592 ~~~~E~La~RI~e~f~iNqeq~~~ls~l~~L~~ 624 (625)
T KOG4422|consen 592 LPICEGLAQRIMEDFAINQEQKEALSNLTALTS 624 (625)
T ss_pred chhhhHHHHHHHHhcCcCHHHHHHHhhhhhhcC
Confidence 332222333444444444555555555555443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-15 Score=149.51 Aligned_cols=398 Identities=10% Similarity=0.015 Sum_probs=286.9
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHH
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQ 142 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (481)
.+.....-.+.+....|+.++|+++|.+.... ++.....+..+...+...|++++|...|+...+.. +.+...+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~----~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~ 87 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVH----MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQR 87 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 45556666777888899999999999999763 23336779999999999999999999999998764 34567777
Q ss_pred HHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcC
Q 042941 143 GLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKAR 222 (481)
Q Consensus 143 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~ 222 (481)
.+..++...|++++|...++++....|.+.. +..+...+. ..|+.++|+..++++....+. +...+..+..++...+
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~-~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK-RAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH-HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence 8889999999999999999998776777777 888888888 999999999999999987544 4555666778888899
Q ss_pred CHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHc-----CCCh---HHHHHHHHHHHHc-CCCCChh-hHH----
Q 042941 223 NLHKVLRLFDQMKRMGIECDR------KVYNAVIHALAK-----GRLV---KDAISLMKSMEEK-GVAPNVV-TYN---- 282 (481)
Q Consensus 223 ~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~-----~g~~---~~a~~~~~~~~~~-~~~~~~~-~~~---- 282 (481)
..+.|++.++.... .|+. .....++..... .+++ ++|+..++.+.+. ...|+.. .+.
T Consensus 165 ~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 165 LSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred ChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 99999998876554 2221 112223333222 2234 7788888888754 2223322 111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHh---chhHHHHHHHHHHHcCCCC---CHHHHHHHHHHH
Q 042941 283 SLIKPLCKARKLDEARQAFDEMLQRGIS-PTIRTYHAFLDIIR---TGEEVFGLLESMRKMGCQP---TNDTYIMLIKKF 355 (481)
Q Consensus 283 ~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~ 355 (481)
..+.++...|++++|...|+.+.+.+.. |+.... .+...|. +.+++...++.+.+..... .......+..++
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~-~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQR-WVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHH-HHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence 1133456779999999999999887632 433211 1233443 3455677777766543111 134566677788
Q ss_pred HhcCChhHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hHHHH
Q 042941 356 SRWRQFGNVFKVWNEISENGN-----------GPD---RSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEP-KTDEL 420 (481)
Q Consensus 356 ~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ 420 (481)
...|++++|...++.+..... .|+ ...+..+...+...|+.++|+++++++... .|+. ..+..
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~ 398 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRID 398 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 999999999999999987531 123 234566778899999999999999999875 4544 33444
Q ss_pred HHHHH---hhhhHHHHHHHHHhhcCccCCCCccccccccccchhhccCccccchhcc
Q 042941 421 LQDWS---YNKQFVERQIASLKAHQPQSGQNTRVISKKSDQDREFLQQPETRRVVRH 474 (481)
Q Consensus 421 l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~r~~~~~ 474 (481)
+...+ ++...+.+.++.+....|+++..+..++.++...|+|++|.++.+.+.+
T Consensus 399 lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 399 YASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444 4445555777788888899988899999999999999999988776654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-13 Score=133.26 Aligned_cols=401 Identities=10% Similarity=0.053 Sum_probs=248.0
Q ss_pred HHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCH--HHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 042941 34 VSEVLSWVRNDWEAAFTFFLWAGKQSGYAHST--REYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIR 111 (481)
Q Consensus 34 ~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~ 111 (481)
...++..-.++.+.|+..|+.+.+.. |+. ..+ .++..+...|+.++|+..+++.. .|++........+..
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ 110 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAAR 110 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHH
Confidence 33344433578889999998886544 332 233 77888888899999999998887 334444555666677
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHH
Q 042941 112 RYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSRE 191 (481)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 191 (481)
.+...|++++|+++|+++.+... -++..+..++..+...++.++|++.++++....+ +...+..++..+. ..++..+
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp-~~~~~l~layL~~-~~~~~~~ 187 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERDP-TVQNYMTLSYLNR-ATDRNYD 187 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc-chHHHHHHHHHHH-hcchHHH
Confidence 88888999999999999988653 3466777778888999999999999988766543 4444433433333 3566656
Q ss_pred HHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHH---------------------------------------
Q 042941 192 AERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFD--------------------------------------- 232 (481)
Q Consensus 192 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--------------------------------------- 232 (481)
|+..++++.+.... +...+..+..++.+.|-...|.++..
T Consensus 188 AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 188 ALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 89999888887432 45555555566665554444443333
Q ss_pred ---------HHHHc-CCCCCH-H----HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 042941 233 ---------QMKRM-GIECDR-K----VYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEA 297 (481)
Q Consensus 233 ---------~~~~~-~~~~~~-~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 297 (481)
.+... +-.|.. . ...-.+-++...|++.++.+.|+.+...+.+....+-.++..+|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 22221 111211 1 11234455666777777777787777776554555667777777777888888
Q ss_pred HHHHHHHHHCCC-----CCCHHHHHHHHHHHhchh---HHHHHHHHHHHcCC-----------CCC--H-HHHHHHHHHH
Q 042941 298 RQAFDEMLQRGI-----SPTIRTYHAFLDIIRTGE---EVFGLLESMRKMGC-----------QPT--N-DTYIMLIKKF 355 (481)
Q Consensus 298 ~~~~~~m~~~~~-----~p~~~~~~~li~~~~~~~---~~~~~~~~~~~~~~-----------~~~--~-~~~~~l~~~~ 355 (481)
..+|+.+..... .++......|.-++...+ ++..+++.+.+... .|+ - ..+..++..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 888877755431 223333455555654443 44556666655210 122 1 1233455666
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH-HHHHH---HhhhhHH
Q 042941 356 SRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDE-LLQDW---SYNKQFV 431 (481)
Q Consensus 356 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~---~~~~~~~ 431 (481)
...|++.+|++.++.+....+ -|......+...+...|++.+|.+.++.... ..|+..... ..... +.+-..+
T Consensus 427 ~~~gdl~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTAP-ANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHH
Confidence 777788888888877766533 3677777777777777888888877766554 345543322 22222 2333444
Q ss_pred HHHHHHHhhcCccCCCCc
Q 042941 432 ERQIASLKAHQPQSGQNT 449 (481)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~ 449 (481)
+..++.+.+..|+++..-
T Consensus 504 ~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 504 ELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHHHhhCCCchhHH
Confidence 455666677777766433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.8e-14 Score=138.34 Aligned_cols=194 Identities=12% Similarity=0.070 Sum_probs=147.1
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHH
Q 042941 66 REYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLL 145 (481)
Q Consensus 66 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 145 (481)
.+.-.-+-...+.|+++.|++.|++..+. ++.+......++..+...|+.++|+..+++..... .........+.
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~----~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA 109 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKA----GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAA 109 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhh----CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHH
Confidence 33344444566899999999999999987 44333333388888889999999999999988311 22333444446
Q ss_pred HHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHH
Q 042941 146 SALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLH 225 (481)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~ 225 (481)
..+...|++++|.++|+++....|.+...+..++..+. ..++.++|++.++.+... .|+...+..++..+...++..
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~-~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQA-DAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh-hcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHH
Confidence 78899999999999999988877888888888888888 899999999999999877 455555544444454566676
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 042941 226 KVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKS 268 (481)
Q Consensus 226 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 268 (481)
+|++.++++.+.. +-+...+..++.++.+.|-...|.++..+
T Consensus 187 ~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 187 DALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 7999999999984 45677777888888888877777666554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-12 Score=129.48 Aligned_cols=407 Identities=14% Similarity=0.066 Sum_probs=223.0
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHH-HHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh-cCCHHH
Q 042941 44 DWEAAFTFFLWAGKQSGYAHSTREYHTM-IAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCA-VHDVGR 121 (481)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~-~~~~~~ 121 (481)
..+.|.+.++ . +.....|...+.... ...|.+.|+++.|++++.++.+.+ +.+......+...|.. .++ +.
T Consensus 162 q~eqAl~AL~-l-r~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~----pl~~~~~~~L~~ay~q~l~~-~~ 234 (987)
T PRK09782 162 QLPVARAQLN-D-ATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN----TLSAAERRQWFDVLLAGQLD-DR 234 (987)
T ss_pred hHHHHHHHHH-H-hhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHhhCH-HH
Confidence 3355555555 2 222223344444444 788888888888888888888873 2235556667677776 355 77
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCC--CchHhH--H---------------------
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFP--FNTKSF--N--------------------- 176 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~--~--------------------- 176 (481)
+..+++. .++.++..+..+...|.+.|+.++|.+++.+++...+ |...++ +
T Consensus 235 a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~ 310 (987)
T PRK09782 235 LLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFAD 310 (987)
T ss_pred HHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHH
Confidence 7777543 2335777788888999999999999999887643211 111110 0
Q ss_pred -------HHHHHHH--------------------------------------------------------------HhcC
Q 042941 177 -------IILNGWC--------------------------------------------------------------NIIG 187 (481)
Q Consensus 177 -------~l~~~~~--------------------------------------------------------------~~~~ 187 (481)
.++..+. .+.|
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~ 390 (987)
T PRK09782 311 NRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNG 390 (987)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 0011122 0223
Q ss_pred CHHHHHHHHHHHHhc-C-CcccHHhHHHHHHHHHhcCC---HHHHHHH----------------------HHHHHHc-C-
Q 042941 188 SSREAERVWMEMSQR-G-ICYDVVSFSCIISCYSKARN---LHKVLRL----------------------FDQMKRM-G- 238 (481)
Q Consensus 188 ~~~~a~~~~~~~~~~-g-~~~~~~~~~~ll~~~~~~~~---~~~a~~~----------------------~~~~~~~-~- 238 (481)
+.++|.++|+..... + ..++.....-++..|.+.+. ..++..+ ....... +
T Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 470 (987)
T PRK09782 391 QSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD 470 (987)
T ss_pred cHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc
Confidence 444444444433321 0 11122222234444444433 1222111 1111110 1
Q ss_pred CCC--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 042941 239 IEC--DRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTY 316 (481)
Q Consensus 239 ~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 316 (481)
.++ +...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...|+++.... |+...+
T Consensus 471 ~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~a~ 545 (987)
T PRK09782 471 MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--MSNEDL 545 (987)
T ss_pred CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCcHHH
Confidence 123 55666767766665 67777887776666542 444333333444457788888888887765542 333333
Q ss_pred HHHHHHHhch---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042941 317 HAFLDIIRTG---EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLN 393 (481)
Q Consensus 317 ~~li~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (481)
..+...+.+. ..+...++...+.. +.+...+..+.....+.|++++|...+++..+. .|+...|..+...+.+.
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~l 622 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQR 622 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHC
Confidence 3333333333 34455555555543 223333333333444557777777777777764 35566777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHH-HHHHHHhhhhHHH---HHHHHHhhcCccCCCCccccccccccchhhccCcccc
Q 042941 394 GKLEEAHQYYMEMKEKQLLPEPKTDE-LLQDWSYNKQFVE---RQIASLKAHQPQSGQNTRVISKKSDQDREFLQQPETR 469 (481)
Q Consensus 394 g~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~r 469 (481)
|++++|+..+++.... .|+..... .+...+...|..+ ..++...+..|+++..+..++.++...|++++|.+..
T Consensus 623 G~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 623 HNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7777777777777763 45444332 2323333333333 4455666667777777777777777777777776544
Q ss_pred ch
Q 042941 470 RV 471 (481)
Q Consensus 470 ~~ 471 (481)
+.
T Consensus 701 ~~ 702 (987)
T PRK09782 701 RL 702 (987)
T ss_pred HH
Confidence 43
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.5e-13 Score=114.51 Aligned_cols=386 Identities=14% Similarity=0.194 Sum_probs=259.2
Q ss_pred HHHHHHHHHHh-hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccC--Chh-HHHHHHHHHhcCCC----------
Q 042941 31 SELVSEVLSWV-RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVR--KFD-TAWALIDEMRGGET---------- 96 (481)
Q Consensus 31 ~~~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~-~a~~~~~~~~~~~~---------- 96 (481)
..+=+.++... .+...++.-+++.| ++.|...+...--.++..-+-.+ ++- --++.|-.|...|-
T Consensus 116 V~~E~nL~kmIS~~EvKDs~ilY~~m-~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKMISSREVKDSCILYERM-RSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHHHhhcccchhHHHHHHH-HhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 33444555544 35667788888888 66676667666666655433221 111 11222222222110
Q ss_pred ------CCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhc-cCCCC
Q 042941 97 ------GPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCN-KDVFP 169 (481)
Q Consensus 97 ------~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~ 169 (481)
..-+-|..++..+|.++|+-...+.|.++|++......+.+..+||.+|.+-.-..+ .+++.+| .....
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcC
Confidence 001224789999999999999999999999999988888999999999976544333 5566554 44578
Q ss_pred CchHhHHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHH-HHHHHHHHHHc--C--C-
Q 042941 170 FNTKSFNIILNGWCNIIGSSRE----AERVWMEMSQRGICYDVVSFSCIISCYSKARNLHK-VLRLFDQMKRM--G--I- 239 (481)
Q Consensus 170 ~~~~~~~~l~~~~~~~~~~~~~----a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~--~--~- 239 (481)
||..|+|+++.+.. +.|+++. |.+++.+|++.|+.|...+|..+|..+++-++..+ +..++.++... | +
T Consensus 271 Pnl~TfNalL~c~a-kfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 271 PNLFTFNALLSCAA-KFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CchHhHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 99999999999999 9998865 55677889999999999999999999998887644 55555555532 2 2
Q ss_pred ---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC----CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042941 240 ---ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKG----VAPN---VVTYNSLIKPLCKARKLDEARQAFDEMLQRGI 309 (481)
Q Consensus 240 ---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 309 (481)
+.|...|...|..|....+.+.|.++..-+.... +.|+ ..-|..+....|+....+.....|+.|.-.-.
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 3356778888999999999999998877665321 2222 23356677788888999999999999998888
Q ss_pred CCCHHHHHHHHHHHhchhHH---HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-C--------------------hhHHH
Q 042941 310 SPTIRTYHAFLDIIRTGEEV---FGLLESMRKMGCQPTNDTYIMLIKKFSRWR-Q--------------------FGNVF 365 (481)
Q Consensus 310 ~p~~~~~~~li~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~--------------------~~~a~ 365 (481)
-|+..+...++++....+.+ .++|..+...|...+...-.-++..+++.. + .+...
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e 509 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYE 509 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 89999988888876554433 455555555553333333333333333332 1 11111
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHH
Q 042941 366 KVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK-QLLPEPKTDELLQDW 424 (481)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~ 424 (481)
..-.++.+..+ .....+...-.+.+.|+.++|.+++..+..+ +-.|.....+.+...
T Consensus 510 ~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El 567 (625)
T KOG4422|consen 510 SQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAEL 567 (625)
T ss_pred hhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHH
Confidence 22233444444 4556777777889999999999999998555 344555556655443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-12 Score=121.37 Aligned_cols=284 Identities=12% Similarity=0.040 Sum_probs=186.4
Q ss_pred cCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHH--HHHHHHHcCCChh
Q 042941 78 VRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQ--GLLSALCRYKNVQ 155 (481)
Q Consensus 78 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~ 155 (481)
.|+++.|.+.+....+..-.| ...+.....+....|+++.|...+.++.+. .|+..... .....+...|+++
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p----~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP----VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHH
Confidence 577777777776655531111 222333344446777788888877777653 34433222 3356677777777
Q ss_pred hHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccH-------HhHHHHHHHHHhcCCHHHHH
Q 042941 156 DAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDV-------VSFSCIISCYSKARNLHKVL 228 (481)
Q Consensus 156 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~ll~~~~~~~~~~~a~ 228 (481)
.|...++......|.+......+...|. +.|++++|..++..+.+.+..++. .+|..++.......+.+...
T Consensus 171 ~Al~~l~~~~~~~P~~~~al~ll~~~~~-~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 171 AARHGVDKLLEVAPRHPEVLRLAEQAYI-RTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 7777777766666667777777777777 777777777777777776544222 12223333333334445555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 229 RLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
++++.+.+. .+.++.....+...+...|+.++|.+++++..+. .|+.. -.++.+.+..++.+++....+...+..
T Consensus 250 ~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 250 RWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhC
Confidence 555554332 2446666677777777777777777777777664 23331 122333344577777777777666542
Q ss_pred CCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042941 309 ISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIH 388 (481)
Q Consensus 309 ~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 388 (481)
+-|...+..+...|.+.+++++|.+.|+...+. .|+...|..+..
T Consensus 325 ---------------------------------P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~ 369 (398)
T PRK10747 325 ---------------------------------GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLAD 369 (398)
T ss_pred ---------------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHH
Confidence 345667888999999999999999999999884 589999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 042941 389 ALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 389 ~~~~~g~~~~A~~~~~~m~~ 408 (481)
.+.+.|+.++|.+++++-..
T Consensus 370 ~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 370 ALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999998754
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-12 Score=120.26 Aligned_cols=292 Identities=10% Similarity=-0.015 Sum_probs=152.5
Q ss_pred ccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhh
Q 042941 77 KVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQD 156 (481)
Q Consensus 77 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 156 (481)
..|+++.|.+.+....+. .|+ ....+.....++...|+.+.|...+....+....+...........+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~--~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAE--PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 456666666666555443 122 1223333445555556666666666665543211111222223555555666666
Q ss_pred HHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHH---HhcCCHHHHHHHHHH
Q 042941 157 AEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCY---SKARNLHKVLRLFDQ 233 (481)
Q Consensus 157 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~---~~~~~~~~a~~~~~~ 233 (481)
|...++.+....|.+......+...+. ..|++++|.+.+..+.+.+..++......-..++ ...+..++..+.+..
T Consensus 172 Al~~l~~l~~~~P~~~~~l~ll~~~~~-~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMAPRHKEVLKLAEEAYI-RSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 666666555544555555555556665 5666666666666666554332211111111111 111122222223333
Q ss_pred HHHcC---CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhH-HHHHHH--HHhcCCHHHHHHHHHHHHHC
Q 042941 234 MKRMG---IECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTY-NSLIKP--LCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 234 ~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~--~~~~g~~~~a~~~~~~m~~~ 307 (481)
+.+.. .+.+...+..+...+...|+.+.|.+++++..+..+ |.... ..++.. ....++.+.+.+.++...+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p--d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG--DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC--CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 32221 012445555555555566666666666655555422 22110 001111 11223333333333333322
Q ss_pred CCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 042941 308 GISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTN--DTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTA 385 (481)
Q Consensus 308 ~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 385 (481)
.+-++ ....++...+.+.|++++|.+.|+........|+...+..
T Consensus 329 ---------------------------------~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~ 375 (409)
T TIGR00540 329 ---------------------------------VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAM 375 (409)
T ss_pred ---------------------------------CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHH
Confidence 12233 5677889999999999999999995444445688888889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 042941 386 LIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
+...+.+.|+.++|.+++++...
T Consensus 376 La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 376 AADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999998643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-11 Score=122.82 Aligned_cols=431 Identities=9% Similarity=0.004 Sum_probs=220.5
Q ss_pred HHHHHHhcCCChhHHHHHHHhcCCCCCHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCCh
Q 042941 4 LVDILREFSHKRSEMRNKIEECGIKVSSELVSEVLSWV--RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKF 81 (481)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 81 (481)
+++.+.+.+... ... .++ .+.|.......-.... .+..-++.+.+..+.++.+ -+.....-+.....+.|+.
T Consensus 319 ~~~~~~~~~~~~-~~~-~~~--~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~--~~~~~l~q~~~~~~~~~~~ 392 (987)
T PRK09782 319 TLPVLLKEGQYD-AAQ-KLL--ATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEP--ANLTRLDQLTWQLMQNGQS 392 (987)
T ss_pred HHHHHHhccHHH-HHH-HHh--cCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcccH
Confidence 356666666422 111 222 3444444332222222 1233344444444544421 3667777777778899999
Q ss_pred hHHHHHHHHHhcCCCCCC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHH
Q 042941 82 DTAWALIDEMRGGETGPS-LVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHL 160 (481)
Q Consensus 82 ~~a~~~~~~~~~~~~~p~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 160 (481)
++|.++|+..... .++ ..+......++..|.+.+......++..-.. +++...-..+.. +.-....+...
T Consensus 393 ~~a~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~---~~~~~~~~~~~ 463 (987)
T PRK09782 393 REAADLLLQRYPF--QGDARLSQTLMARLASLLESHPYLATPAKVAILSK----PLPLAEQRQWQS---QLPGIADNCPA 463 (987)
T ss_pred HHHHHHHHHhcCC--CcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc----ccccchhHHHHh---hhhhhhhhHHH
Confidence 9999999998773 111 1124555577888888776333322221111 111111111111 11111112222
Q ss_pred HhhccCCCCC--chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042941 161 MFCNKDVFPF--NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMG 238 (481)
Q Consensus 161 ~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 238 (481)
+.......|+ +...|..+..++. . ++.++|...+.+.... .|+......+...+...|++++|...|+.+...
T Consensus 464 ~~~al~~~p~~~~~~a~~~LG~~l~-~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~- 538 (987)
T PRK09782 464 IVRLLGDMSPSYDAAAWNRLAKCYR-D-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH- 538 (987)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHH-h-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 2222222233 4445555555554 3 5555565555544443 233322222333334556666666666554433
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 042941 239 IECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHA 318 (481)
Q Consensus 239 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 318 (481)
+|+...+..+...+.+.|++++|...+++..+.++. +...+..+.......|++++|...+++..+.. |+...+..
T Consensus 539 -~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~ 614 (987)
T PRK09782 539 -DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVA 614 (987)
T ss_pred -CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHH
Confidence 233333444455555566666666666655554311 22222222223333466666666666555443 34444444
Q ss_pred HHHHHhchhH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042941 319 FLDIIRTGEE---VFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGK 395 (481)
Q Consensus 319 li~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (481)
+...+.+.++ +...++...+.. +.+...+..+...+...|++++|+..+++..+... -+...+..+..++...|+
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDD 692 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCC
Confidence 4444433332 233333333332 44566788888899999999999999999988643 367788899999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHH-HHHHHhhhhHHHHHHHHHhhcCccCCC--Cccccccccccchhh
Q 042941 396 LEEAHQYYMEMKEKQLLPEPKTDEL-LQDWSYNKQFVERQIASLKAHQPQSGQ--NTRVISKKSDQDREF 462 (481)
Q Consensus 396 ~~~A~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~ 462 (481)
+++|+..|++..+ ..|+..-... .-.........+++.+.+.....-++. +....+.++..++++
T Consensus 693 ~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 693 MAATQHYARLVID--DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSSIGLRSGAMSTANNNV 760 (987)
T ss_pred HHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccchhccccchHhhhcccc
Confidence 9999999999986 4566533332 222333444444444444443333332 333444444444443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-11 Score=117.64 Aligned_cols=408 Identities=10% Similarity=0.020 Sum_probs=291.6
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcC--CCCCCcccHHHHHHHHHHHHhcCCHHHH
Q 042941 45 WEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGG--ETGPSLVTKQTLLILIRRYCAVHDVGRA 122 (481)
Q Consensus 45 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~~~~li~~~~~~~~~~~a 122 (481)
.+.|.+-|....++.+ +|.-.+---.......|++..|+.+|...... ...|| ....+..++.+.|+.+.|
T Consensus 146 ~~~A~a~F~~Vl~~sp--~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD-----~rIgig~Cf~kl~~~~~a 218 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSP--DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKAD-----VRIGIGHCFWKLGMSEKA 218 (1018)
T ss_pred HHHHHHHHHHHHhhCC--cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC-----ccchhhhHHHhccchhhH
Confidence 5789999998876663 56544333334445778999999999996553 33444 222334567788999999
Q ss_pred HHHHHHHhhcCCCCCHHhHHHHHHHHH---cCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 123 INAFYAYKRFKFAVGIEDFQGLLSALC---RYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEM 199 (481)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 199 (481)
+..|.+..+.+. -++.++..|...-. ....+..+..++...-...+.++...+.|...|. -.|++..+..+...+
T Consensus 219 ~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fy-fK~dy~~v~~la~~a 296 (1018)
T KOG2002|consen 219 LLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFY-FKKDYERVWHLAEHA 296 (1018)
T ss_pred HHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHh-hcccHHHHHHHHHHH
Confidence 999999998653 24444443333222 2344666777777665556678899999999999 899999999999988
Q ss_pred HhcCCc--ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC
Q 042941 200 SQRGIC--YDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDR--KVYNAVIHALAKGRLVKDAISLMKSMEEKGVA 275 (481)
Q Consensus 200 ~~~g~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (481)
...... .-...|-.+.++|...|++++|...|.+..+.. ++. ..+--+...|.+.|+++.+...|+...+..+.
T Consensus 297 i~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~ 374 (1018)
T KOG2002|consen 297 IKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN 374 (1018)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc
Confidence 876322 123468889999999999999999999888764 343 44456889999999999999999999887443
Q ss_pred CChhhHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHH------HHHHHHHHHcCCCCCH
Q 042941 276 PNVVTYNSLIKPLCKAR----KLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEV------FGLLESMRKMGCQPTN 345 (481)
Q Consensus 276 ~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~------~~~~~~~~~~~~~~~~ 345 (481)
+..+...+-..|+..+ ..+.|..++....+.- ..|...|..+-..+-..+.. ..+.+.+...+..+.+
T Consensus 375 -~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~ 452 (1018)
T KOG2002|consen 375 -NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPP 452 (1018)
T ss_pred -hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCH
Confidence 6667777777777664 4567777777666553 23566666666665443222 4455556666667888
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 042941 346 DTYIMLIKKFSRWRQFGNVFKVWNEISEN---GNGPDR------SSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPK 416 (481)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 416 (481)
...|.+...+...|++++|...|...... ...++. .+--.+...+-..++.+.|.+.|+..... .|+..
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YI 530 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYI 530 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhH
Confidence 99999999999999999999999988664 122333 12223455566778999999999998875 46654
Q ss_pred HH-HHHHHHH---hhhhHHHHHHHHHhhcCccCCCCccccccccccchhhccCcc
Q 042941 417 TD-ELLQDWS---YNKQFVERQIASLKAHQPQSGQNTRVISKKSDQDREFLQQPE 467 (481)
Q Consensus 417 ~~-~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 467 (481)
.. .-+.... .+..++...++.+.+.+.++|.++..+|+.|....+|.-+.+
T Consensus 531 d~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k 585 (1018)
T KOG2002|consen 531 DAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKK 585 (1018)
T ss_pred HHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccccc
Confidence 43 2222222 344566677888888999999999999999988888887766
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.2e-12 Score=104.65 Aligned_cols=235 Identities=13% Similarity=0.002 Sum_probs=172.2
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC---HHhHHHH
Q 042941 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG---IEDFQGL 144 (481)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l 144 (481)
|-.=+..+. ..+.++|.++|-+|.+. |+.|..+..+|.+.|.+.|..+.|+.+...+.++.--+. ......|
T Consensus 39 Yv~GlNfLL-s~Q~dKAvdlF~e~l~~----d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL 113 (389)
T COG2956 39 YVKGLNFLL-SNQPDKAVDLFLEMLQE----DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQL 113 (389)
T ss_pred HHhHHHHHh-hcCcchHHHHHHHHHhc----CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 333333333 45678888888888886 666677788888888888889999888888875321111 1234456
Q ss_pred HHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccH----HhHHHHHHHHHh
Q 042941 145 LSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDV----VSFSCIISCYSK 220 (481)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~ll~~~~~ 220 (481)
..-|...|-++.|+.+|..+.+....-......++..|- ...+|++|+++-+++...+..+.. .-|..+...+..
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ-~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQ-ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 677888888888888888876644445566777888888 888899999888888877554332 234555556666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 042941 221 ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQA 300 (481)
Q Consensus 221 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 300 (481)
..+.+.|..++....+.+ +.++..-..+.+.....|+++.|.+.++.+.+.++..-..+...|..+|...|+.++....
T Consensus 193 ~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 193 SSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 778888888888888765 4455555667788888999999999999988886666667778888899999999999888
Q ss_pred HHHHHHCCC
Q 042941 301 FDEMLQRGI 309 (481)
Q Consensus 301 ~~~m~~~~~ 309 (481)
+..+.+...
T Consensus 272 L~~~~~~~~ 280 (389)
T COG2956 272 LRRAMETNT 280 (389)
T ss_pred HHHHHHccC
Confidence 888877643
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.9e-11 Score=114.04 Aligned_cols=380 Identities=12% Similarity=0.045 Sum_probs=184.7
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHH
Q 042941 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLS 146 (481)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 146 (481)
.|-.+.++|-..|++++|...|.+..+. .|+. ..-.+.-+...+.+.|+.+.+...|+...+.. +-+..+...|..
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~-~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDN-FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCC-ccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHh
Confidence 3444444444555555555555444433 1111 02222334444455555555555555444322 122334444444
Q ss_pred HHHcCC----ChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHH----HhcCCcccHHhHHHHHHHH
Q 042941 147 ALCRYK----NVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEM----SQRGICYDVVSFSCIISCY 218 (481)
Q Consensus 147 ~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~ll~~~ 218 (481)
.|...+ ..+.|..++.......+.|...|-.+...+- .++...++.+|... ...+-.+.+...|.+...+
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e--~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE--QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH--hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 444332 2333333443333333445555555554443 33333335544432 2334445666666666666
Q ss_pred HhcCCHHHHHHHHHHHHHc---CCCCCHH------HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 042941 219 SKARNLHKVLRLFDQMKRM---GIECDRK------VYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLC 289 (481)
Q Consensus 219 ~~~~~~~~a~~~~~~~~~~---~~~~~~~------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 289 (481)
...|+++.|...|...... ...+|.. +--.+..++-..++.+.|.+.|..+.+..+. =+..|-.+.....
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~ 541 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMAR 541 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHH
Confidence 7777777777777666543 1122221 1122334444555666666666666554221 1112222221222
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCC----------------------------------CHHHHHHHHHHHhch--------
Q 042941 290 KARKLDEARQAFDEMLQRG-ISP----------------------------------TIRTYHAFLDIIRTG-------- 326 (481)
Q Consensus 290 ~~g~~~~a~~~~~~m~~~~-~~p----------------------------------~~~~~~~li~~~~~~-------- 326 (481)
..+...+|...++.....+ ..| |.++..+|=+.|...
T Consensus 542 ~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 542 DKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred hccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 2344555555555443221 112 222222222211110
Q ss_pred -------hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042941 327 -------EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEA 399 (481)
Q Consensus 327 -------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 399 (481)
..+.+++....+.. +.|...-|.+.-.++..|+++.|..+|.+..+... -...+|-.+..+|..+|++..|
T Consensus 622 ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHH
Confidence 11233333333332 34445555666667778888888888888877533 2445677788888888888888
Q ss_pred HHHHHHHHHC-CCCCCHhHHHHHHHHHhhhhHHHHHHH---HHhhcCccCCCCccccccc
Q 042941 400 HQYYMEMKEK-QLLPEPKTDELLQDWSYNKQFVERQIA---SLKAHQPQSGQNTRVISKK 455 (481)
Q Consensus 400 ~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~ 455 (481)
+++|+..... .-.-++...+.|.+.+...+...++.+ ......|.++.....++-+
T Consensus 700 IqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 700 IQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 8888875554 434455666677776665555554444 4444555555544444433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-11 Score=103.48 Aligned_cols=286 Identities=13% Similarity=0.069 Sum_probs=197.0
Q ss_pred CCCHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHH
Q 042941 28 KVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLL 107 (481)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 107 (481)
.++..-+..+=..+.+.++.|...|..+.+.. +.+..+.-++.+.|.+.|..+.|+++-+.+.++.--+..--..+..
T Consensus 34 ~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~ 111 (389)
T COG2956 34 RLSRDYVKGLNFLLSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQ 111 (389)
T ss_pred hccHHHHhHHHHHhhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 35555555555555788888888888886533 2466777788888888899999999988888762211111123455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCC-CCC----chHhHHHHHHHH
Q 042941 108 ILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDV-FPF----NTKSFNIILNGW 182 (481)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~----~~~~~~~l~~~~ 182 (481)
.|.+-|...|-+|.|+.+|..+.+.+ ..-......|+..|-...++++|+.+-+++... ..+ -...|.-+...+
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 67778888888999999988888754 335566778888888888888888887764321 111 123466677777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHH
Q 042941 183 CNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDA 262 (481)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 262 (481)
. ...+.+.|..++.+..+.+.+ ....--.+.+.....|+++.|.+.++...+.+..--..+...|..+|...|+.++.
T Consensus 191 ~-~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 191 L-ASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred h-hhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 7 778888888888888776333 22233345677888889999999988888876555566777888889999999888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHH
Q 042941 263 ISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFD-EMLQRGISPTIRTYHAFLDII 323 (481)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~p~~~~~~~li~~~ 323 (481)
...+..+.+... ....-..+...-......+.|..++. ++.++ |+...+..+|+.-
T Consensus 269 ~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~---Pt~~gf~rl~~~~ 325 (389)
T COG2956 269 LNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRRK---PTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhhC---CcHHHHHHHHHhh
Confidence 888888877633 33333444444444444555555544 44443 8888888888864
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.2e-15 Score=129.79 Aligned_cols=227 Identities=14% Similarity=0.146 Sum_probs=47.4
Q ss_pred HHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHc
Q 042941 71 MIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCR 150 (481)
Q Consensus 71 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 150 (481)
+...+.+.|++++|+++++........|+ +...|..+...+...++++.|...|+.+...+.. ++..+..++.. ..
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~--~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPD--DPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccc-ccccccccccc-cc
Confidence 34444455555555555543332211111 1233333333344444555555555554443311 33333334333 34
Q ss_pred CCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CcccHHhHHHHHHHHHhcCCHHHHHH
Q 042941 151 YKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRG-ICYDVVSFSCIISCYSKARNLHKVLR 229 (481)
Q Consensus 151 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~ 229 (481)
.+++++|.+++...-.. .++...+..++..+. ..++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+
T Consensus 90 ~~~~~~A~~~~~~~~~~-~~~~~~l~~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYER-DGDPRYLLSALQLYY-RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp -----------------------------H-HH-HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccccccccccccccccc-ccccchhhHHHHHHH-HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 44444444444332111 123333334444444 4444444444444433221 12233334444444444444444444
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 230 LFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEML 305 (481)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 305 (481)
.+++..+.. +.|......++..+...|+.+++..+++...+.. +.|...+..+..+|...|++++|+.+|++..
T Consensus 168 ~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 168 DYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccc
Confidence 444444432 2223334444444444444444444444443332 1233333444444444444444444444433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.7e-15 Score=131.11 Aligned_cols=254 Identities=13% Similarity=0.097 Sum_probs=113.1
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
.++++.|++++........-+.+...|..+.......++++.|.+.++.+... +..++..+..++.. ...+++++
T Consensus 21 ~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~----~~~~~~~~~~l~~l-~~~~~~~~ 95 (280)
T PF13429_consen 21 RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS----DKANPQDYERLIQL-LQDGDPEE 95 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccccccccc-cccccccc
Confidence 58889999999654333211245566666677777899999999999999887 33346677777777 78899999
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccC--CCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKD--VFPFNTKSFNIILNGWCNIIGSSREAERVWMEM 199 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 199 (481)
|..++...-+.. +++..+..++..+.+.++++++..+++.+.. ..+.+...|..+...+. +.|+.++|+..+++.
T Consensus 96 A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 96 ALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE-QLGDPDKALRDYRKA 172 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH-HCCHHHHHHHHHHHH
T ss_pred cccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 999998766543 5667788889999999999999999988543 24567888888889888 999999999999999
Q ss_pred HhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChh
Q 042941 200 SQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVV 279 (481)
Q Consensus 200 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (481)
.+..+. |....+.++..+...|+.+++.+++....+.. +.|...+..+..+|...|+.++|...|++..+.... |..
T Consensus 173 l~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d~~ 249 (280)
T PF13429_consen 173 LELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-DPL 249 (280)
T ss_dssp HHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HH
T ss_pred HHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-ccc
Confidence 987433 56778889999999999999999999888764 556777889999999999999999999999886443 788
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 280 TYNSLIKPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 280 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 306 (481)
....+..++...|+.++|..+.++..+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 888899999999999999999887654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-10 Score=110.93 Aligned_cols=357 Identities=11% Similarity=0.064 Sum_probs=230.1
Q ss_pred HhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCCh
Q 042941 75 LGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNV 154 (481)
Q Consensus 75 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 154 (481)
+.-.|++++|.+++.++.+. ++.....|.+|...|-..|+.+++...+-.+.-.+ +-|...|..+.....+.|.+
T Consensus 149 lfarg~~eeA~~i~~EvIkq----dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQ----DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHh----CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 33449999999999998887 66668889999999999999999888776655443 34667888888888899999
Q ss_pred hhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhH----HHHHHHHHhcCCHHHHHHH
Q 042941 155 QDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSF----SCIISCYSKARNLHKVLRL 230 (481)
Q Consensus 155 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----~~ll~~~~~~~~~~~a~~~ 230 (481)
++|.-+|.+..+..|++...+---+..|- +.|+...|..-|.++.....+.|..-+ ..+++.+...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~p~n~~~~~ers~L~~-~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPSNWELIYERSSLYQ-KTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHH-HhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999998876666777766666677777 889999999999888877443333222 3345566677777888888
Q ss_pred HHHHHH-cCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC---------------------------ChhhHH
Q 042941 231 FDQMKR-MGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAP---------------------------NVVTYN 282 (481)
Q Consensus 231 ~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---------------------------~~~~~~ 282 (481)
++.... .+-..+...++.++..|.+...++.|......+......+ +... .
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 877665 2234566677888888888888888888887776621111 2222 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhchhHHHH---HHHHHHHcCCCCCHHHHHHHHHHHHh
Q 042941 283 SLIKPLCKARKLDEARQAFDEMLQRGISP--TIRTYHAFLDIIRTGEEVFG---LLESMRKMGCQPTNDTYIMLIKKFSR 357 (481)
Q Consensus 283 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~ 357 (481)
.++-++...+..+....+...+.+.+..| ++..|.-+..++.+.+.... ++..+......-+...|-.+..+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 22333444445555555555555555332 34456666666666655533 33333333333345667777777777
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHhHHHHHHHHHhhhh
Q 042941 358 WRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKE--------KQLLPEPKTDELLQDWSYNKQ 429 (481)
Q Consensus 358 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~--------~~~~p~~~~~~~l~~~~~~~~ 429 (481)
.|.++.|.+.++....... .+...-.+|-..+.+.|+.++|.+.+..+.. .+..|+..........+...|
T Consensus 462 l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 7777777777777776421 2333444566667777777777777777532 122333333333334445555
Q ss_pred HHHHHHHHHh
Q 042941 430 FVERQIASLK 439 (481)
Q Consensus 430 ~~~~~~~~~~ 439 (481)
..++.+....
T Consensus 541 k~E~fi~t~~ 550 (895)
T KOG2076|consen 541 KREEFINTAS 550 (895)
T ss_pred hHHHHHHHHH
Confidence 5555444333
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.1e-11 Score=103.05 Aligned_cols=287 Identities=12% Similarity=0.055 Sum_probs=160.3
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCC-CCCchHhHHHHHHHHHHhcCCHHHHHH
Q 042941 116 VHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDV-FPFNTKSFNIILNGWCNIIGSSREAER 194 (481)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~a~~ 194 (481)
.|++..|+....+..+.+-. ....|.....+....|+.+.+-+++.+..+. ..++....-....... ..|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll-~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL-NRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH-hCCCchhHHH
Confidence 35555555555554443311 2223334444555555555555555544332 1223333333444444 4555555555
Q ss_pred HHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHcCCChHHHHHHHH
Q 042941 195 VWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDR-------KVYNAVIHALAKGRLVKDAISLMK 267 (481)
Q Consensus 195 ~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~ 267 (481)
-++.+...+.. ++.......++|.+.|++..+..++..+.+.|.-.+. .+|..+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 55555554333 3344555555555555555555555555555533222 344555555555555555444555
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHH---HHHHHH-HHHcCCCC
Q 042941 268 SMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEV---FGLLES-MRKMGCQP 343 (481)
Q Consensus 268 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~---~~~~~~-~~~~~~~~ 343 (481)
..... .+-+...-.+++.-+.+.|+.++|.++.++..+++..|. ...++. +.+.++. .+..+. ....+.
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~~-~l~~~d~~~l~k~~e~~l~~h~~-- 326 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLIP-RLRPGDPEPLIKAAEKWLKQHPE-- 326 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHHh-hcCCCCchHHHHHHHHHHHhCCC--
Confidence 44332 222444445555566666666666666666666554444 111111 1122222 222222 222333
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 042941 344 TNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPE 414 (481)
Q Consensus 344 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 414 (481)
++..+.+|...|.+.+.|.+|...|+...+. .|+..+|+.+..++.+.|+..+|.+++++....-..|+
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 3468888999999999999999999987774 58999999999999999999999999998765433343
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-11 Score=114.89 Aligned_cols=283 Identities=10% Similarity=0.032 Sum_probs=192.1
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHH-HHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 042941 31 SELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTM-IAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLIL 109 (481)
Q Consensus 31 ~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~l 109 (481)
..+...++....++++.|.+.+....... +++..+..+ ..+..+.|+++.|...+.++.+. .|+.. .......
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~-~~~~l~~ 159 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQ-LPVEITR 159 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcch-HHHHHHH
Confidence 34556666666688888887777653322 233333333 44447888999999999888765 33310 1122233
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchH--------hHHHHHHH
Q 042941 110 IRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTK--------SFNIILNG 181 (481)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~l~~~ 181 (481)
...+...|+++.|...++.+.+.. +-++..+..+...|.+.|++++|..++..+......+.. .|..++..
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~ 238 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ 238 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 667788899999999999888765 335677888888899999999999888876543222222 33344444
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHH
Q 042941 182 WCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKD 261 (481)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (481)
.. ...+.+...++++.+.+. .+.+......+...+...|+.++|.+++++..+. +|+.... ++.+....++.++
T Consensus 239 ~~-~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~ 312 (398)
T PRK10747 239 AM-ADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQ 312 (398)
T ss_pred HH-HhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHH
Confidence 44 455666677777766543 2346667778888888899999999988888774 4555222 3344445688888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHH
Q 042941 262 AISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEV 329 (481)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 329 (481)
+.+..+...+..+. |...+..+...+.+.+++++|.+.|+...+. .|+..++..+...+...++.
T Consensus 313 al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 313 LEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKP 377 (398)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCH
Confidence 88888888877543 6666778888888889999999999888875 47777777777766655444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-10 Score=101.47 Aligned_cols=147 Identities=10% Similarity=0.065 Sum_probs=95.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhc
Q 042941 281 YNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKM--GCQPTNDTYIMLIKKFSRW 358 (481)
Q Consensus 281 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 358 (481)
.-.+...|-...+..+|++++.+.... ++.|......|-..|-+.|+--+.|+..-+. -++-+..+..-|...|...
T Consensus 561 l~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidt 639 (840)
T KOG2003|consen 561 LVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDT 639 (840)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhh
Confidence 333344444444444444444333221 2334555566666666666554444443332 2345666777777777777
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHH
Q 042941 359 RQFGNVFKVWNEISENGNGPDRSSYTALIHALF-LNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFV 431 (481)
Q Consensus 359 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 431 (481)
.-+++++..|++..- +.|+..-|..++..|. +.|++.+|+++|+....+ ++-|..+...|++.++..|+.
T Consensus 640 qf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 640 QFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 778888888887654 5699999998887654 689999999999998764 677888888888877655443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-10 Score=109.00 Aligned_cols=301 Identities=9% Similarity=-0.046 Sum_probs=211.5
Q ss_pred CHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHH
Q 042941 30 SSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHS-TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLI 108 (481)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~ 108 (481)
...+...++....++++.|.+.+....+.. |+ ...+-....+..+.|+++.|.+.+.+..+. .|+.. ......
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~---~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~-l~~~~~ 158 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHA---AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDN-ILVEIA 158 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCc-hHHHHH
Confidence 345667777777899999999998775433 44 344445567788899999999999998765 23411 233444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHH-HHHHH---HH
Q 042941 109 LIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNI-ILNGW---CN 184 (481)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-l~~~~---~~ 184 (481)
....+...|+++.|...++.+.+.. +-++..+..+..++...|+++.|.+.+..+......+...+.. -..++ .
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l- 236 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL- 236 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-
Confidence 5778888999999999999999876 3366788899999999999999999998866543333333321 11111 2
Q ss_pred hcCCHHHHHHHHHHHHhcCCc---ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHcCCC
Q 042941 185 IIGSSREAERVWMEMSQRGIC---YDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKV---YNAVIHALAKGRL 258 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~ 258 (481)
..+..+...+.+..+...... .+...+..+...+...|+.++|.+++++..+.. ||... ...........++
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~ 314 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPED 314 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCC
Confidence 223333333455544443221 367788888899999999999999999999863 34331 1222222344578
Q ss_pred hHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHH
Q 042941 259 VKDAISLMKSMEEKGVAPNV--VTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESM 336 (481)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~ 336 (481)
.+.+.+.++...+..+. |. ....++...+.+.|++++|.+.|+......
T Consensus 315 ~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~---------------------------- 365 (409)
T TIGR00540 315 NEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACK---------------------------- 365 (409)
T ss_pred hHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh----------------------------
Confidence 88999999888776332 34 456688889999999999999999533221
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042941 337 RKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISE 373 (481)
Q Consensus 337 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 373 (481)
..|+...+..+...+.+.|+.++|.+++++...
T Consensus 366 ----~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 366 ----EQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 156666777888889999999999999987644
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-09 Score=100.53 Aligned_cols=444 Identities=11% Similarity=0.036 Sum_probs=244.5
Q ss_pred ChhHHHHHHHhcCCCCCHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHH---
Q 042941 14 KRSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDE--- 90 (481)
Q Consensus 14 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--- 90 (481)
+|+.++..-.++ -|++-.+-..+..+ ..++.|..++....+. ++.+...|.+....=-..|+.+...++.++
T Consensus 394 darilL~rAvec--cp~s~dLwlAlarL-etYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~ 468 (913)
T KOG0495|consen 394 DARILLERAVEC--CPQSMDLWLALARL-ETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLS 468 (913)
T ss_pred HHHHHHHHHHHh--ccchHHHHHHHHHH-HHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344444444432 34444444444444 5566777777776433 335666776666666677777777776654
Q ss_pred -HhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--CHHhHHHHHHHHHcCCChhhHHHHHhhccCC
Q 042941 91 -MRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAV--GIEDFQGLLSALCRYKNVQDAEHLMFCNKDV 167 (481)
Q Consensus 91 -~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 167 (481)
+...|+..+ ...|..=...|-..|.+-.+..+.......|+.- --.||..-...|.+.+.++-|..+|......
T Consensus 469 ~L~~ngv~i~---rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv 545 (913)
T KOG0495|consen 469 ELQANGVEIN---RDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV 545 (913)
T ss_pred HHhhcceeec---HHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh
Confidence 344566666 6667666666666777777777777666665542 2346666666677777777777777665555
Q ss_pred CCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 042941 168 FPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYN 247 (481)
Q Consensus 168 ~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 247 (481)
+|.+...|......-- ..|..++-..+|++....-.+ ....|-.....+-..|+...|..++....+.. +.+...|-
T Consensus 546 fp~k~slWlra~~~ek-~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwl 622 (913)
T KOG0495|consen 546 FPCKKSLWLRAAMFEK-SHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWL 622 (913)
T ss_pred ccchhHHHHHHHHHHH-hcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHH
Confidence 6666666666555544 566666666666666655222 33344444555566677777777776666653 33555666
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhch
Q 042941 248 AVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFL-DIIRTG 326 (481)
Q Consensus 248 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~~~ 326 (481)
+.++.-..+..++.|..+|.+.... .|+...|..-+..---.+..++|.+++++..+. -|+..-+-.++ +.+.+.
T Consensus 623 aavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 623 AAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQM 698 (913)
T ss_pred HHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHH
Confidence 6666666677777777777666553 345555554444444456666676666665554 24443332222 223333
Q ss_pred hHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042941 327 EEVFGLLESMRKM--GCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYM 404 (481)
Q Consensus 327 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (481)
++....-+..... .++-....|..+...=-+.|.+-.|+.++++.+-.+.. +...|-..|..=.+.|+.+.|..+..
T Consensus 699 ~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lma 777 (913)
T KOG0495|consen 699 ENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMA 777 (913)
T ss_pred HHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHH
Confidence 3332221111111 12223344555555555555566666666555544332 45555555555566666555555444
Q ss_pred HHHHC----C-------------------------CCCCHhHHHHHHHHHh---hhhHHHHHHHHHhhcCccCCCCcccc
Q 042941 405 EMKEK----Q-------------------------LLPEPKTDELLQDWSY---NKQFVERQIASLKAHQPQSGQNTRVI 452 (481)
Q Consensus 405 ~m~~~----~-------------------------~~p~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l 452 (481)
+..+. | +.-|+...-.+...+- +...+.+-+.......|++++.+..+
T Consensus 778 kALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~f 857 (913)
T KOG0495|consen 778 KALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWF 857 (913)
T ss_pred HHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHH
Confidence 33221 0 1122222222222222 22333355556666777777777777
Q ss_pred ccccccchhhccCccccchhc
Q 042941 453 SKKSDQDREFLQQPETRRVVR 473 (481)
Q Consensus 453 ~~~~~~~~~~~~a~~~r~~~~ 473 (481)
...+.+.|.-++..++...-.
T Consensus 858 ykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 858 YKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHHhCCHHHHHHHHHHHh
Confidence 777777776666555555443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-10 Score=107.53 Aligned_cols=325 Identities=14% Similarity=0.128 Sum_probs=237.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHH
Q 042941 112 RYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSRE 191 (481)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 191 (481)
.....|+.++|..++.+..+.. +.....|-.|...|-..|+.+++...+-......|.|...|..+..... +.|.++.
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~-~~~~i~q 225 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE-QLGNINQ 225 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-hcccHHH
Confidence 3344599999999999999875 4467789999999999999999999887776667778899999999888 9999999
Q ss_pred HHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHcCCChHHHHHHHH
Q 042941 192 AERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRK----VYNAVIHALAKGRLVKDAISLMK 267 (481)
Q Consensus 192 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~ 267 (481)
|.-.|.+..+..+. +...+---+..|-+.|+...|...|.++.+...+.|.. ..-.+++.+...++-+.|.+.++
T Consensus 226 A~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999988443 55555556678899999999999999999874322222 22345667777888899999998
Q ss_pred HHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---------------------------HHHHHH
Q 042941 268 SMEEK-GVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTI---------------------------RTYHAF 319 (481)
Q Consensus 268 ~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---------------------------~~~~~l 319 (481)
..... +-..+...++.++..|.+...++.|......+......+|. ..+..+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 87662 22346677889999999999999999988887763222222 221111
Q ss_pred HHHHh--chhHH-HHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042941 320 LDIIR--TGEEV-FGLLESMRKMGC--QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNG 394 (481)
Q Consensus 320 i~~~~--~~~~~-~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 394 (481)
+ ++. +..+. ..+...+.+..+ .-+...|.-+..+|.+.|++.+|+.+|..+.......+...|-.+..+|...|
T Consensus 385 i-cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 385 I-CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred h-hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 1 111 11222 334444444443 33456788888888999999999999988888655556778888888888899
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHH-HHHHHHHhhhhHHHHHHHHHhhcC
Q 042941 395 KLEEAHQYYMEMKEKQLLPEPKTD-ELLQDWSYNKQFVERQIASLKAHQ 442 (481)
Q Consensus 395 ~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~ 442 (481)
.+++|.+.|+.... ..|+..-. -.|...+...|..+++++.+.+..
T Consensus 464 e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999998888876 34544333 344455666777777777777643
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-08 Score=93.92 Aligned_cols=413 Identities=11% Similarity=-0.021 Sum_probs=300.8
Q ss_pred CCHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHH
Q 042941 29 VSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLI 108 (481)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~ 108 (481)
|++.-+-...-.+ ..++.|.-++..+.+-. +.+.. |..+|++...++.|..++....+. ++.+ +..|.+
T Consensus 377 P~sv~LWKaAVel-E~~~darilL~rAvecc--p~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd---~~IWit 445 (913)
T KOG0495|consen 377 PRSVRLWKAAVEL-EEPEDARILLERAVECC--PQSMD----LWLALARLETYENAKKVLNKAREI-IPTD---REIWIT 445 (913)
T ss_pred CchHHHHHHHHhc-cChHHHHHHHHHHHHhc--cchHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCC---hhHHHH
Confidence 3444444433334 44455877787775433 23344 445666777789999999998875 4445 899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHH----hhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccC-C--CCCchHhHHHHHHH
Q 042941 109 LIRRYCAVHDVGRAINAFYAY----KRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKD-V--FPFNTKSFNIILNG 181 (481)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~--~~~~~~~~~~l~~~ 181 (481)
....--.+|+.+.+..++.+- ...|+..+...|..=...|-..|.+--+..+...... + ...-..+|+.-...
T Consensus 446 aa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~ 525 (913)
T KOG0495|consen 446 AAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQS 525 (913)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHH
Confidence 888888899999999888765 4678889999998888888888988888888766322 1 12234678888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHH
Q 042941 182 WCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKD 261 (481)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (481)
+. +.+.++-|..+|....+.-. -+...|......--..|..++...+|++.... ++-....|-...+.+-..|+...
T Consensus 526 ~~-k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ 602 (913)
T KOG0495|consen 526 CE-KRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPA 602 (913)
T ss_pred HH-hcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHH
Confidence 88 89999999999998887632 35667777776667789999999999999887 35566777778888889999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---HHHHHhchhHHHHHHHHHHH
Q 042941 262 AISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHA---FLDIIRTGEEVFGLLESMRK 338 (481)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~---li~~~~~~~~~~~~~~~~~~ 338 (481)
|..++....+.... +...|-.-+..-..+..++.|..+|.+....+ |+...|.- +.......+++.+++++..+
T Consensus 603 ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~s--gTeRv~mKs~~~er~ld~~eeA~rllEe~lk 679 (913)
T KOG0495|consen 603 ARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSIS--GTERVWMKSANLERYLDNVEEALRLLEEALK 679 (913)
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccC--CcchhhHHHhHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999988665 77888889999999999999999999988754 55555443 33445566777777777666
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHH
Q 042941 339 MGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTD 418 (481)
Q Consensus 339 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 418 (481)
. ++.-...|..+.+.+-+.++++.|.+.|..-.+. ++..+..|-.|...=-+.|.+-.|..++++..-++ +-+...|
T Consensus 680 ~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lw 756 (913)
T KOG0495|consen 680 S-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLW 756 (913)
T ss_pred h-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhH
Confidence 4 2333457888889999999999999998776553 33345577777777788999999999999988764 2334445
Q ss_pred HHHHHH---HhhhhHHHHHHHHHhhcCccCCCCccccccccccchh
Q 042941 419 ELLQDW---SYNKQFVERQIASLKAHQPQSGQNTRVISKKSDQDRE 461 (481)
Q Consensus 419 ~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 461 (481)
-..+.. .++..+++..+....+.-|.+.-.+..-.++...-++
T Consensus 757 le~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 757 LESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 444443 3555666666666666666665555444444433333
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-11 Score=113.69 Aligned_cols=284 Identities=11% Similarity=0.040 Sum_probs=141.7
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCC---CCCchHhHHHHHHHHHHhcCCHHHHHH
Q 042941 118 DVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDV---FPFNTKSFNIILNGWCNIIGSSREAER 194 (481)
Q Consensus 118 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~a~~ 194 (481)
+..+|+..|..+... +.-+..+...+.++|...+++++|+++|+.++.. ...+..+|.+.+.-+- + +-++.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq-~----~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ-D----EVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH-h----hHHHH
Confidence 345666666653332 2222344445556666666666666666554332 1234455555554332 1 11111
Q ss_pred HH-HHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 042941 195 VW-MEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKG 273 (481)
Q Consensus 195 ~~-~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 273 (481)
.+ +.+.+.. +-.+.+|.++.++|+-+++.+.|++.|+...+.+ +....+|+.+..-+.....+|.|...|+......
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 11 1222211 1134566666666666666666666666666543 2255666666666666666666666666655431
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHH
Q 042941 274 VAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTY---HAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIM 350 (481)
Q Consensus 274 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~---~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (481)
.. +-..|--+...|.+.++++.|+-.|+...+-+.. +.+.. ..+...+.+.+.+..+++...... +.|+..--.
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH 562 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence 11 2222333444566666666666666665554321 11111 111112222233333333333222 112222222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042941 351 LIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLP 413 (481)
Q Consensus 351 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 413 (481)
.+..+...+++++|+..++++++. ++-+...|..+...|.+.|+.+.|+.-|.-+.+...++
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 334455567777777777777764 22244466667777777777777777777666544333
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-11 Score=112.26 Aligned_cols=266 Identities=11% Similarity=0.037 Sum_probs=155.9
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCC-cccHHHHHHHHHHHHhcCCHHHH
Q 042941 44 DWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPS-LVTKQTLLILIRRYCAVHDVGRA 122 (481)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~~~~li~~~~~~~~~~~a 122 (481)
...+|+..|..+.... .-+..+..-+..+|...+++++|+++|+.+.+. .|- .....+|.+.+--+ .+.-+.
T Consensus 334 ~~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~--~p~rv~~meiyST~LWHL---q~~v~L 406 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI--EPYRVKGMEIYSTTLWHL---QDEVAL 406 (638)
T ss_pred HHHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhHHHHHHHHH---HhhHHH
Confidence 3466777777743222 123366666777777788888888888777664 111 11245555554322 111111
Q ss_pred HHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 042941 123 INAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR 202 (481)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 202 (481)
-.+-+.+.+.. +-.+.+|..+.++|.-.++.+.|++.|++.....+....+|+.+..-+. ...++|.|...|+.....
T Consensus 407 s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~-~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 407 SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESI-ATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhh-hhHHHHhHHHHHHhhhcC
Confidence 12222333322 3356677777777777777777777777655544446666777766666 677777777777666543
Q ss_pred CCcccHHhHH---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChh
Q 042941 203 GICYDVVSFS---CIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVV 279 (481)
Q Consensus 203 g~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (481)
|...|+ -+.-.|.+.++++.|+-.|+...+.+ +.+......+...+.+.|+.|+|++++++......+ |+.
T Consensus 485 ----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l 558 (638)
T KOG1126|consen 485 ----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPL 558 (638)
T ss_pred ----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cch
Confidence 333333 34556777777777777777776654 345555566666677777777777777777666544 443
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhch
Q 042941 280 TYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFL-DIIRTG 326 (481)
Q Consensus 280 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~~~ 326 (481)
.--.....+...+++++|+..++++++. .|+..+...++ ..|.+.
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~ 604 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRL 604 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHH
Confidence 3334455556667777777777777664 35544433333 334443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.8e-10 Score=110.64 Aligned_cols=215 Identities=12% Similarity=0.036 Sum_probs=109.6
Q ss_pred hhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh---------cCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcC
Q 042941 81 FDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCA---------VHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRY 151 (481)
Q Consensus 81 ~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 151 (481)
+++|..+|++..+. ++.....|..+..++.. .+++++|...+++..+.+ +-+...+..+..++...
T Consensus 277 ~~~A~~~~~~Al~l----dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 277 LQQALKLLTQCVNM----SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 45666666666654 33334455444443321 223566666666666543 22445555555556666
Q ss_pred CChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHH
Q 042941 152 KNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLF 231 (481)
Q Consensus 152 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 231 (481)
|++++|...|++.....|.+...+..+...+. ..|++++|...+++..+.... +...+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLF-MAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 66666666666654444445555555555566 666666666666666555332 1112222333344456666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 232 DQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEML 305 (481)
Q Consensus 232 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 305 (481)
+++.....+-+...+..+..++...|++++|...+.++..... .+....+.+...|+..| +.|...++.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 6655432122333445555555666666666666665544311 12223333444444444 35555555443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.1e-09 Score=90.93 Aligned_cols=357 Identities=11% Similarity=0.041 Sum_probs=232.8
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhH
Q 042941 62 AHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDF 141 (481)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 141 (481)
.-|...+-.....+.+.|....|.+.|...... -|....+|..|...... .+.+. .... +.+.+...+
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~---~e~~~----~l~~-~l~~~~h~M 228 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITD---IEILS----ILVV-GLPSDMHWM 228 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhch---HHHHH----HHHh-cCcccchHH
Confidence 345555555566677889999999999888765 33336666666544322 22222 2221 122222211
Q ss_pred H--HHHHHHHcCCChhhHHHHHhhccC-CCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc--ccHHhHHHHHH
Q 042941 142 Q--GLLSALCRYKNVQDAEHLMFCNKD-VFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGIC--YDVVSFSCIIS 216 (481)
Q Consensus 142 ~--~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~ll~ 216 (481)
. .+..++....+.+++.+-.+.+.+ +++.+...-+....+.. ...++++|+.+|+++.+..+- -|..+|+.++-
T Consensus 229 ~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y-~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY 307 (559)
T KOG1155|consen 229 KKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASY-NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH
Confidence 1 244666677777887777766544 35444444444444444 789999999999999887321 25677777664
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 042941 217 CYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDE 296 (481)
Q Consensus 217 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 296 (481)
+ +..+-.- --+-+...+.+ +--+.|..++.+-|+-.++.++|...|++..+.+++ ....|+.+-+-|....+...
T Consensus 308 v--~~~~skL-s~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 308 V--KNDKSKL-SYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred H--HhhhHHH-HHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHH
Confidence 3 3322211 11112222221 334577888888899999999999999999988665 67788888899999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHH-cCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 042941 297 ARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRK-MGC-QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISEN 374 (481)
Q Consensus 297 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 374 (481)
|.+-++..++-+. -|...|-.+=++|.-.+...-.+-..++ ..+ +.|...|.+|..+|.+.++.++|+..|.+....
T Consensus 383 Ai~sYRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 383 AIESYRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999888653 3667777777777766555322222222 233 446789999999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHhHHH--HHHHHHhhhhHHHHHHHHH
Q 042941 375 GNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK----QLLPEPKTDE--LLQDWSYNKQFVERQIASL 438 (481)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~--~l~~~~~~~~~~~~~~~~~ 438 (481)
|-. +...+..|...|-+.++.++|..+|.+-.+. |...+..... .|...+.+.+..+++-...
T Consensus 462 ~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 462 GDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 543 5678999999999999999999998886652 4333322222 2334455555555554433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.8e-09 Score=92.54 Aligned_cols=252 Identities=13% Similarity=0.101 Sum_probs=176.5
Q ss_pred cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHH
Q 042941 43 NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRA 122 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a 122 (481)
++.+.+-+.+..+.+..| .++...+-+........|+...|..-++.+.+.+ +..+.......++|.+.|++..+
T Consensus 132 gd~~~an~yL~eaae~~~-~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~----pr~~~vlrLa~r~y~~~g~~~~l 206 (400)
T COG3071 132 GDEDRANRYLAEAAELAG-DDTLAVELTRARLLLNRRDYPAARENVDQLLEMT----PRHPEVLRLALRAYIRLGAWQAL 206 (400)
T ss_pred ccHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC----cCChHHHHHHHHHHHHhccHHHH
Confidence 556667777777754433 3566677777777777788877777777777662 22367777777888888888888
Q ss_pred HHHHHHHhhcCCCCCH-------HhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHH
Q 042941 123 INAFYAYKRFKFAVGI-------EDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERV 195 (481)
Q Consensus 123 ~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~ 195 (481)
..++..+.+.+.--+. .+|+.+++-....+..+.-...++........++..-..++.-+. ++|+.++|.++
T Consensus 207 l~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li-~l~~~~~A~~~ 285 (400)
T COG3071 207 LAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLI-RLGDHDEAQEI 285 (400)
T ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHH-HcCChHHHHHH
Confidence 8888888777755443 346666666666666666666666666666666667777777777 78888888888
Q ss_pred HHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC
Q 042941 196 WMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVA 275 (481)
Q Consensus 196 ~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (481)
..+..+.+..|+..+ .-.+.+.++...-++..+.-.+.. +-++..+.+|...|.+.+.+.+|...|+...+. .
T Consensus 286 i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~ 358 (400)
T COG3071 286 IEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--R 358 (400)
T ss_pred HHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--C
Confidence 888777766655221 223556677777777666655542 345577778888888888888888888866664 5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 276 PNVVTYNSLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 276 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
|+..+|+.+..++.+.|+...|.+++++....
T Consensus 359 ~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 359 PSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 78888888888888888888888888775543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.6e-10 Score=96.93 Aligned_cols=263 Identities=13% Similarity=0.071 Sum_probs=146.1
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 042941 33 LVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRR 112 (481)
Q Consensus 33 ~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~ 112 (481)
.+..+.+.+. ..+++++-.+.. .+.|++-+...-+-...+.-...++++|+.+|+++.+. -+-...+..+|+.++-.
T Consensus 232 F~~~a~~el~-q~~e~~~k~e~l-~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn-DPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 232 FLKKAYQELH-QHEEALQKKERL-SSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN-DPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHH-HhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCcchhHHHHhHHHHH
Confidence 3444444443 445555555544 34555445444444444555667777777777777665 11122234555555432
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHH
Q 042941 113 YCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREA 192 (481)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 192 (481)
++.+-.-+.-. ...... -+--+.|+..+.+-|.-.++-++|...|++.....|.....|+.+..-|. ...+...|
T Consensus 309 --~~~~skLs~LA-~~v~~i-dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyv-EmKNt~AA 383 (559)
T KOG1155|consen 309 --KNDKSKLSYLA-QNVSNI-DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYV-EMKNTHAA 383 (559)
T ss_pred --HhhhHHHHHHH-HHHHHh-ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHH-HhcccHHH
Confidence 22111111100 111111 12334455556666666666666666666654444555566666666666 66666666
Q ss_pred HHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 193 ERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 193 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
.+-|+...+.+.. |-..|-.+..+|.-.+.+.-|+-.|++..... +-|...|.+|..+|.+.++.++|.+.|......
T Consensus 384 i~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 384 IESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 6666666655333 55566666666666666666666666666553 445666666666666666666666666666655
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 273 GVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 273 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 306 (481)
|-. +...+..+...|-+.++..+|-..|.+..+
T Consensus 462 ~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 462 GDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 433 445566666666666666666666665443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.5e-10 Score=96.97 Aligned_cols=194 Identities=10% Similarity=0.030 Sum_probs=127.0
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHH
Q 042941 256 GRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLES 335 (481)
Q Consensus 256 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~ 335 (481)
+|++++|...|++.....-.-....|| +--.+-..|++++|++.|-.+..- +.-+......+.+.|...++..+.++.
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 466777777777766542221112222 222345567777777777665321 112444444455555554444444444
Q ss_pred HHHc-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042941 336 MRKM-G-CQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLP 413 (481)
Q Consensus 336 ~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 413 (481)
+.+. . ++.|+.+..-|...|-+.|+-.+|.+.+-.--+. ++.+..+..-|..-|....-+++|+.+|++..- +.|
T Consensus 581 ~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp 657 (840)
T KOG2003|consen 581 LMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQP 657 (840)
T ss_pred HHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCc
Confidence 4333 2 4556778888999999999999998876554433 456778888888888888889999999998753 789
Q ss_pred CHhHHHHHHH-HHhhhhHHHHHHHHHhhcCccCCCCcccccc
Q 042941 414 EPKTDELLQD-WSYNKQFVERQIASLKAHQPQSGQNTRVISK 454 (481)
Q Consensus 414 ~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 454 (481)
+..-|.+++. ++.+.|...++++..++.+...|+.+.+|-.
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkf 699 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKF 699 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHH
Confidence 9999987776 4567788888888888777776666665543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.9e-10 Score=108.96 Aligned_cols=251 Identities=10% Similarity=-0.056 Sum_probs=180.5
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHh---------ccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 042941 44 DWEAAFTFFLWAGKQSGYAHSTREYHTMIAILG---------KVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYC 114 (481)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~ 114 (481)
+.+.|..+|+......+ .+...|..+..++. ..+++++|...+++..+. ++.+..++..+...+.
T Consensus 276 ~~~~A~~~~~~Al~ldP--~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l----dP~~~~a~~~lg~~~~ 349 (553)
T PRK12370 276 SLQQALKLLTQCVNMSP--NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL----DHNNPQALGLLGLINT 349 (553)
T ss_pred HHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHH
Confidence 35789999999875442 24556666655443 234588999999999887 5556888999989999
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHH
Q 042941 115 AVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAER 194 (481)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~ 194 (481)
..|++++|...|++..+.+ +.++..+..+..++...|++++|...+++.....|.+...+..++..+. ..|++++|..
T Consensus 350 ~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~-~~g~~eeA~~ 427 (553)
T PRK12370 350 IHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITY-YHTGIDDAIR 427 (553)
T ss_pred HccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH-hccCHHHHHH
Confidence 9999999999999999875 3356778888999999999999999999976654544444445555566 7899999999
Q ss_pred HHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC-
Q 042941 195 VWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKG- 273 (481)
Q Consensus 195 ~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~- 273 (481)
.+++......+-+...+..+..++...|++++|...+..+.... +.+....+.+...|...| +.|...++.+.+..
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 99998765322245556777888899999999999999876652 223444555666777777 47888777766531
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 274 VAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 274 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
-.+....+ +-..|.-.|+.+.+..+ +++.+.+
T Consensus 505 ~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 505 RIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 12222222 33445556777777666 7776653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.6e-10 Score=96.16 Aligned_cols=198 Identities=12% Similarity=0.036 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHH
Q 042941 105 TLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCN 184 (481)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 184 (481)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++.....+.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~- 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC- 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-
Confidence 33344444444444444444444444322 1123334444444444444444444444433323333344444445555
Q ss_pred hcCCHHHHHHHHHHHHhcCCc-ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 042941 185 IIGSSREAERVWMEMSQRGIC-YDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAI 263 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 263 (481)
..|++++|.+.++........ .....+..+..++...|++++|...+.+..+.. +.+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555555443211 122344445555666666666666666655542 223445555666666666666666
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 264 SLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 306 (481)
..+++..+. .+.+...+..+...+...|+.+.|..+.+.+..
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 666666554 222344444555555566666666666555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.8e-10 Score=105.30 Aligned_cols=255 Identities=12% Similarity=0.036 Sum_probs=132.8
Q ss_pred ChhHHHHHHHhcCCCCCHHHHHHHHHHhhcCH--HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 042941 14 KRSEMRNKIEECGIKVSSELVSEVLSWVRNDW--EAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEM 91 (481)
Q Consensus 14 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 91 (481)
....++..++..|..|+..+|.+++..++..+ +.|- +|..| +..+.+.+...++.++....+.++.+.+.
T Consensus 8 ~ptnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm-~~ksLpv~e~vf~~lv~sh~~And~Enpk------ 79 (1088)
T KOG4318|consen 8 FPTNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFM-EIKSLPVREGVFRGLVASHKEANDAENPK------ 79 (1088)
T ss_pred CcchHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhh-hcccccccchhHHHHHhcccccccccCCC------
Confidence 34567788888888888888888888887444 3444 77777 44555567778888888888888777665
Q ss_pred hcCCCCCCcccHHHHHHHHHHHHhcCCHHH---HHHHHHHHh----hcCCC-CCHHh-------------HHHHHHHHHc
Q 042941 92 RGGETGPSLVTKQTLLILIRRYCAVHDVGR---AINAFYAYK----RFKFA-VGIED-------------FQGLLSALCR 150 (481)
Q Consensus 92 ~~~~~~p~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~----~~~~~-~~~~~-------------~~~ll~~~~~ 150 (481)
.|. +.+|..|..+|...||+.. +.+.+.... ..|+. |.... -..++....-
T Consensus 80 -----ep~---aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~ 151 (1088)
T KOG4318|consen 80 -----EPL---ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVL 151 (1088)
T ss_pred -----CCc---hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHH
Confidence 345 7788888888888888654 222111111 11110 00000 0112222233
Q ss_pred CCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHH
Q 042941 151 YKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRL 230 (481)
Q Consensus 151 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 230 (481)
.|-++.+++++..++..-...+... +++-.. . .+...+++........-.|++.+|.+++++-..+|+.+.|..+
T Consensus 152 eglwaqllkll~~~Pvsa~~~p~~v--fLrqnv-~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~l 226 (1088)
T KOG4318|consen 152 EGLWAQLLKLLAKVPVSAWNAPFQV--FLRQNV-V--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNL 226 (1088)
T ss_pred HHHHHHHHHHHhhCCcccccchHHH--HHHHhc-c--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHH
Confidence 3334444444433222111111111 122222 1 1111222222221111135555666666655566666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 042941 231 FDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKAR 292 (481)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 292 (481)
+.+|.+.|++.+.+-|-.++-+ .++...+..++.-|...|+.|+..|+.--+-.+..+|
T Consensus 227 l~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 227 LYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 6666666655555555555443 4555555555555666666666666555444444433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-07 Score=84.64 Aligned_cols=392 Identities=12% Similarity=0.045 Sum_probs=243.0
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHH
Q 042941 46 EAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINA 125 (481)
Q Consensus 46 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~ 125 (481)
..|..+|+.+..-. ..+...|-..+..=.+...+..|..+++..... -|- -...|-.-+..=-..|++..|.++
T Consensus 90 ~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPR--VdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 90 QRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPR--VDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cch--HHHHHHHHHHHHHHhcccHHHHHH
Confidence 45777777775322 356677778888888888889999999887764 222 123444444444556899999999
Q ss_pred HHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CC
Q 042941 126 FYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR-GI 204 (481)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~-g~ 204 (481)
|++..+ ..|+..+|++.++.=.+.+.++.|..++++..- +.|+..+|-.....=. ++|....|.++|+...+. |-
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~-~HP~v~~wikyarFE~-k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL-VHPKVSNWIKYARFEE-KHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-ecccHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHhhh
Confidence 988776 579999999999999999999999999988543 3488888888887777 888888888888876653 11
Q ss_pred c-ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--------------------C-----------------------CC
Q 042941 205 C-YDVVSFSCIISCYSKARNLHKVLRLFDQMKRM--------------------G-----------------------IE 240 (481)
Q Consensus 205 ~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------------------~-----------------------~~ 240 (481)
. .+...+.+....-.++..++.|.-+|+-.... | -+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 1 12223344333333444455555555444332 0 12
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCC
Q 042941 241 CDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNV-------VTYNSLIKPL---CKARKLDEARQAFDEMLQRGIS 310 (481)
Q Consensus 241 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~---~~~g~~~~a~~~~~~m~~~~~~ 310 (481)
-|-.+|-..++.-...|+.+...++|++.... ++|-. ..|-.+=.++ ....+.+.+.++|+...+ -++
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcC
Confidence 34445555666666667777777777777654 33311 1122111122 235677777777777666 233
Q ss_pred CCHHHHHHHHHHHhchh-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 042941 311 PTIRTYHAFLDIIRTGE-------EVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSY 383 (481)
Q Consensus 311 p~~~~~~~li~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 383 (481)
....||..+--.|++.. .+.+++.. ..|..|...+|...|..-.+.+++|.+..++++..+.++. |..+|
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~--AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W 474 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGN--AIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAW 474 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHH--HhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHH
Confidence 34556655554444331 22233222 2366788888888888888888888888888888886543 66677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHhhhhHHH---HHHHHHhhcCccCCCCccccc
Q 042941 384 TALIHALFLNGKLEEAHQYYMEMKEKQ-LLPEPKTDELLQDWSYNKQFVE---RQIASLKAHQPQSGQNTRVIS 453 (481)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~ 453 (481)
......=...|+.+.|..+|.-.++.. +......+-..++--...|..+ ...+.+.+..+..+ .+.+.+
T Consensus 475 ~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA 547 (677)
T KOG1915|consen 475 SKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFA 547 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHH
Confidence 777777777888888888888877652 2222233334444333333333 34445555544443 344333
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.9e-10 Score=96.03 Aligned_cols=202 Identities=10% Similarity=-0.000 Sum_probs=166.1
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHH
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQ 142 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (481)
.....+..+...+...|++++|.+.+++..+. ++.+...+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~ 103 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEH----DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLN 103 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 34677888899999999999999999998876 33347788889999999999999999999998765 34566778
Q ss_pred HHHHHHHcCCChhhHHHHHhhccCC--CCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHh
Q 042941 143 GLLSALCRYKNVQDAEHLMFCNKDV--FPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSK 220 (481)
Q Consensus 143 ~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 220 (481)
.+...+...|++++|...+.+.... .+.....+..+...+. ..|++++|...+++....... +...+..+...+..
T Consensus 104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~ 181 (234)
T TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCAL-KAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYL 181 (234)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHH
Confidence 8889999999999999999885432 2334456677777888 899999999999998876433 45678888899999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 221 ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 221 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
.|++++|...+++..+. .+.+...+..+...+...|+.+.|..+.+.+...
T Consensus 182 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 182 RGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999999998887 3556777778888899999999999998887653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-09 Score=94.67 Aligned_cols=75 Identities=11% Similarity=0.073 Sum_probs=50.0
Q ss_pred cCHHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 43 NDWEAAFTFFLWAGKQSGYAHS-TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
+.+++|+.++.|.+... |+ +..|......|...|+|++..+.....++. .|+ -..++..-.+++-..|++++
T Consensus 129 kkY~eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~--Y~KAl~RRA~A~E~lg~~~e 201 (606)
T KOG0547|consen 129 KKYDEAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPD--YVKALLRRASAHEQLGKFDE 201 (606)
T ss_pred ccHHHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcH--HHHHHHHHHHHHHhhccHHH
Confidence 45678888888886433 55 667777888888888888888877777765 233 23444444555666677776
Q ss_pred HHH
Q 042941 122 AIN 124 (481)
Q Consensus 122 a~~ 124 (481)
|+.
T Consensus 202 al~ 204 (606)
T KOG0547|consen 202 ALF 204 (606)
T ss_pred HHH
Confidence 654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-12 Score=79.20 Aligned_cols=49 Identities=47% Similarity=0.781 Sum_probs=30.4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 042941 276 PNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIR 324 (481)
Q Consensus 276 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 324 (481)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4566666666666666666666666666666666666666666666554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-10 Score=108.90 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 042941 342 QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELL 421 (481)
Q Consensus 342 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 421 (481)
.|+..+|..++.+-.-+|+.+.|..++.+|.+.|++.+..-|..|+-+ .|+..-++.+++-|.+.|+.|+..|+...
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 467777777777777777777777777777777776666656666554 66666777777777777777777776654
Q ss_pred HH
Q 042941 422 QD 423 (481)
Q Consensus 422 ~~ 423 (481)
+.
T Consensus 278 vi 279 (1088)
T KOG4318|consen 278 VI 279 (1088)
T ss_pred HH
Confidence 44
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.33 E-value=5e-12 Score=78.77 Aligned_cols=48 Identities=42% Similarity=0.703 Sum_probs=21.4
Q ss_pred ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042941 206 YDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHAL 253 (481)
Q Consensus 206 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 253 (481)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.9e-08 Score=93.53 Aligned_cols=289 Identities=13% Similarity=0.085 Sum_probs=144.1
Q ss_pred HHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHh-HHHHHHHHHcC
Q 042941 73 AILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIED-FQGLLSALCRY 151 (481)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~ 151 (481)
..+...|++++|++.++.-... + +| ...........+.+.|+.++|..+|..+.+.+ |+... |..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I-~D--k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-I-LD--KLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-C-CC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhh
Confidence 4455666666666666654443 1 12 14445555666666666777777776666654 33333 33333333111
Q ss_pred -----CChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHH
Q 042941 152 -----KNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSS-REAERVWMEMSQRGICYDVVSFSCIISCYSKARNLH 225 (481)
Q Consensus 152 -----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~ 225 (481)
.+.+....+++.+....| .......+.-.+. ....+ ..+...+..+...|+++ +|+.+-..|....+..
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~yp-~s~~~~rl~L~~~-~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKYP-RSDAPRRLPLDFL-EGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAA 160 (517)
T ss_pred cccccccHHHHHHHHHHHHHhCc-cccchhHhhcccC-CHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHH
Confidence 134455555555544432 2222222222222 11222 22334444555555442 3444444444444444
Q ss_pred HHHHHHHHHHHc----C----------CCCCHHHH--HHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 042941 226 KVLRLFDQMKRM----G----------IECDRKVY--NAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLC 289 (481)
Q Consensus 226 ~a~~~~~~~~~~----~----------~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 289 (481)
-...++..+... + -+|+...| ..+...|...|++++|+.++++..+..++ .+..|..-...+-
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilK 239 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHH
Confidence 444444444321 1 12333223 34455566677777777777766665332 3455556666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 042941 290 KARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWN 369 (481)
Q Consensus 290 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 369 (481)
..|++.+|.+.++..+..+. -|..+-+-.+..+.++|++++|.+++.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~---------------------------------~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDL---------------------------------ADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred HCCCHHHHHHHHHHHHhCCh---------------------------------hhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 67777777777766665431 233344445555666666666666666
Q ss_pred HHHHCCCCCCHH------HH--HHHHHHHHhcCCHHHHHHHHHHH
Q 042941 370 EISENGNGPDRS------SY--TALIHALFLNGKLEEAHQYYMEM 406 (481)
Q Consensus 370 ~~~~~~~~~~~~------~~--~~l~~~~~~~g~~~~A~~~~~~m 406 (481)
...+.+..|... +| .-...+|.+.|++..|++.|...
T Consensus 287 ~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 287 LFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred hhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 665544322211 11 12345666666666666554443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2e-07 Score=86.17 Aligned_cols=397 Identities=13% Similarity=0.108 Sum_probs=203.5
Q ss_pred hcCCCCCHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccH
Q 042941 24 ECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTK 103 (481)
Q Consensus 24 ~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 103 (481)
..+-++.+-....+.-.+-++-++|........+.. .-+...|+.+.-.+....++++|++.|...... ++.+.
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~----~~dN~ 109 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI----EKDNL 109 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc----CCCcH
Confidence 344444444444444444455555655555443211 235556666666666666666666666666554 23335
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-HHhHHHHHHHHHcCCChhhHHHHHhhccCC--CCCchHhHHHHHH
Q 042941 104 QTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG-IEDFQGLLSALCRYKNVQDAEHLMFCNKDV--FPFNTKSFNIILN 180 (481)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~ 180 (481)
..+.-+.-.-++.++++........+.+.. |+ ...|..+..++.-.|+...|..+++..... ..|+...+.....
T Consensus 110 qilrDlslLQ~QmRd~~~~~~tr~~LLql~--~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~ 187 (700)
T KOG1156|consen 110 QILRDLSLLQIQMRDYEGYLETRNQLLQLR--PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSEL 187 (700)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 555555544555556655555555555432 22 234555555566666666666666553322 1244433332221
Q ss_pred H------HHHhcCCHHHHHHHHHHHHhcCCcccHHhH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HH
Q 042941 181 G------WCNIIGSSREAERVWMEMSQRGICYDVVSF-SCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVI-HA 252 (481)
Q Consensus 181 ~------~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~ 252 (481)
. .. +.|..++|.+.+..-... ..|...+ ..-...+.+.+++++|..++..+... .||...|...+ .+
T Consensus 188 ~Ly~n~i~~-E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~ 262 (700)
T KOG1156|consen 188 LLYQNQILI-EAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKA 262 (700)
T ss_pred HHHHHHHHH-HcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHH
Confidence 1 22 445555555555433322 1122222 22334456666677777777766665 24444444333 33
Q ss_pred HHcCCChHHHH-HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHH--
Q 042941 253 LAKGRLVKDAI-SLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEV-- 329 (481)
Q Consensus 253 ~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~-- 329 (481)
+.+..+.-+++ .+|....+.-.. ....-..=++......-.+..-.++..+.++|+++- +..+.+.|......
T Consensus 263 lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~ 338 (700)
T KOG1156|consen 263 LGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAF 338 (700)
T ss_pred HHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHH
Confidence 33233333333 455544443111 111001001111112223344455666667776543 33333333332211
Q ss_pred -HHHHHHHHH----cC----------CCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH
Q 042941 330 -FGLLESMRK----MG----------CQPTNDTY--IMLIKKFSRWRQFGNVFKVWNEISENGNGPDRS-SYTALIHALF 391 (481)
Q Consensus 330 -~~~~~~~~~----~~----------~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~ 391 (481)
.++.-.+.. .| -+|+...| -.++..|-+.|+++.|...++...+. .|+.. .|..=.+.+.
T Consensus 339 le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~k 416 (700)
T KOG1156|consen 339 LEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFK 416 (700)
T ss_pred HHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHH
Confidence 222222221 11 15665544 45678889999999999999998885 45544 5555667889
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHHHHHHHHHhh
Q 042941 392 LNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQIASLKA 440 (481)
Q Consensus 392 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~ 440 (481)
..|++++|..++++..+.+ .||...-+.-..+..+....+++.+.+..
T Consensus 417 H~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~sk 464 (700)
T KOG1156|consen 417 HAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSK 464 (700)
T ss_pred hcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 9999999999999998865 35665555555666666555555554443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.8e-08 Score=89.33 Aligned_cols=288 Identities=11% Similarity=0.037 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGW 182 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (481)
..........+-..+++.+...+.+...+.. ++....+..-|.++...|+..+-..+=.++.+..|....+|-.+.--|
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence 3444445555666777777777777777654 445555555566777777766655555556666777777777777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHH
Q 042941 183 CNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDA 262 (481)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 262 (481)
. -.|...+|.+.|.+....... =...|-.+...|+-.|..++|+..+...-+. ++.....+--+.--|.+.+..+.|
T Consensus 323 l-~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 323 L-MIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred H-HhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 7 677788888877766543211 2345667777777777777777777666553 122222233344456677777778
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCC
Q 042941 263 ISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQ 342 (481)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~ 342 (481)
.+.|.+.....+. |+...+-+--.....+.+.+|..+|+..... .+...... .
T Consensus 400 e~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~-------------------------ik~~~~e~-~ 452 (611)
T KOG1173|consen 400 EKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEV-------------------------IKSVLNEK-I 452 (611)
T ss_pred HHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHH-------------------------hhhccccc-c
Confidence 8877777665332 5555665555555667777777777765421 00001111 1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 042941 343 PTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQ 422 (481)
Q Consensus 343 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 422 (481)
....+++.|..+|.+++.+++|+..+++...... -+..+|.++.-.|...|+++.|.+.|.+..- +.|+..+...++
T Consensus 453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL 529 (611)
T KOG1173|consen 453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELL 529 (611)
T ss_pred chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHH
Confidence 2455788999999999999999999999987643 4888999999999999999999999999874 789987777666
Q ss_pred HH
Q 042941 423 DW 424 (481)
Q Consensus 423 ~~ 424 (481)
..
T Consensus 530 ~~ 531 (611)
T KOG1173|consen 530 KL 531 (611)
T ss_pred HH
Confidence 53
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-09 Score=91.03 Aligned_cols=231 Identities=11% Similarity=0.040 Sum_probs=165.5
Q ss_pred HHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhH-HHHHHHHHh
Q 042941 142 QGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSF-SCIISCYSK 220 (481)
Q Consensus 142 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~ll~~~~~ 220 (481)
+.+.++|.+.|.+.+|.+.|+..... .|-+.+|-.+-+.|. +.+++..|+.++.+-.+. -|-.+|| .-+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q-~~~~dTfllLskvY~-ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ-FPHPDTFLLLSKVYQ-RIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc-CCchhHHHHHHHHHH-HhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 45677888888888888877663322 245667777777787 788888888888776654 3444443 345566777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 042941 221 ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQA 300 (481)
Q Consensus 221 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 300 (481)
.++.++|.++|+...+.. +.++.....+...|.-.++++.|+++|.++.+.|+. +...|+.+--+|.-.++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 778888888888777764 456666666777777778888888888888888776 777777777777777888877777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 042941 301 FDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDR 380 (481)
Q Consensus 301 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 380 (481)
|.......-.|+. -..+|-.+.......|++..|.+.|+-....+. ...
T Consensus 381 f~RAlstat~~~~------------------------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ 429 (478)
T KOG1129|consen 381 FQRALSTATQPGQ------------------------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHG 429 (478)
T ss_pred HHHHHhhccCcch------------------------------hhhhhhccceeEEeccchHHHHHHHHHHhccCc-chH
Confidence 7766544322221 123555566667788999999999988877643 356
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 381 SSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
..+|.|...-.+.|++++|..+++...+.
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 68888888888999999999999887763
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.2e-07 Score=79.15 Aligned_cols=351 Identities=10% Similarity=0.099 Sum_probs=235.0
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHH
Q 042941 44 DWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAI 123 (481)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~ 123 (481)
....|.++|+.. ....|+..+|++.|..=.+...++.|..+|+...-. .|+ ..+|..-.+-=-++|+...+.
T Consensus 156 Ni~gaRqiferW---~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~---v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 156 NIAGARQIFERW---MEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPK---VSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred ccHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--ccc---HHHHHHHHHHHHhcCcHHHHH
Confidence 334566666655 233578888888888888888888888888877654 466 677777777777778888888
Q ss_pred HHHHHHhhc-CCC-CCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCc--hHhHHHHHHHHHHhcCCHHHHHHH----
Q 042941 124 NAFYAYKRF-KFA-VGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFN--TKSFNIILNGWCNIIGSSREAERV---- 195 (481)
Q Consensus 124 ~~~~~~~~~-~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~a~~~---- 195 (481)
.+|+...+. |-. .+...+.+....=.++..++.|.-+|.-..+..|.+ ...|..+...=- +-|+.....+.
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEK-qfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEK-QFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-HhcchhhhHHHHhhh
Confidence 888776642 110 111223333333344556667777765544444433 344444444333 55665544443
Q ss_pred ----HHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHH--------HHHHcCCChHH
Q 042941 196 ----WMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDR--KVYNAVI--------HALAKGRLVKD 261 (481)
Q Consensus 196 ----~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li--------~~~~~~g~~~~ 261 (481)
|+.+.+.+ +.|-.+|--.++.-...|+.+...++|+..... ++|-. ..|.-.| -.=....+++.
T Consensus 307 Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 307 RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 23334332 336677888888888889999999999998876 45532 1222222 12235788999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HhchhHHHHHHH
Q 042941 262 AISLMKSMEEKGVAPNVVTYNSLIKPL----CKARKLDEARQAFDEMLQRGISPTIRTYHAFLDI---IRTGEEVFGLLE 334 (481)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~---~~~~~~~~~~~~ 334 (481)
+.++|+...+. ++....||..+=-.| .+..++..|.+++...+ |..|-..+|...|.. +...+....+++
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999884 444566665544444 45788999999998776 457888888888875 444566688888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 335 SMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENG-NGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
...+.+ +-+..+|.-....-...|+.+.|..+|.-..... +......|-+.|.-=...|.++.|..+|+++.+.
T Consensus 462 kfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 462 KFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 888876 5577788888888889999999999999988752 2223446666777667899999999999999875
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-09 Score=90.51 Aligned_cols=229 Identities=15% Similarity=0.054 Sum_probs=172.5
Q ss_pred HHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHh-HHHHHHH
Q 042941 69 HTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIED-FQGLLSA 147 (481)
Q Consensus 69 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~ 147 (481)
+-+...|.+.|.+.+|...|+.-.+. .|- +.+|..|-+.|.+..++..|+.+|.+-++. .|-..| .....+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~---~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPH---PDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCc---hhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHH
Confidence 45667788888888888888887776 333 568888888888888888888888877653 344444 3446677
Q ss_pred HHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHH
Q 042941 148 LCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKV 227 (481)
Q Consensus 148 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a 227 (481)
+-..++.++|.++++......+-++.....+...|. -.++++.|+..|+++.+.|+. +...|+.+.-+|.-.++++-+
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yf-Y~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYF-YDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccc-cCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhh
Confidence 777788888888888765555566666666677777 788888888888888888877 677788888888888888888
Q ss_pred HHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 228 LRLFDQMKRMGIECD--RKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEML 305 (481)
Q Consensus 228 ~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 305 (481)
+.-|+.....--.|+ ...|-.+.......|++..|.+.|+-....+.. +...++.|.-.-.+.|++++|..++....
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 888887776533333 345666777777788888888888888776544 66778877777788888888888888766
Q ss_pred HC
Q 042941 306 QR 307 (481)
Q Consensus 306 ~~ 307 (481)
..
T Consensus 457 s~ 458 (478)
T KOG1129|consen 457 SV 458 (478)
T ss_pred hh
Confidence 54
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.6e-08 Score=87.80 Aligned_cols=289 Identities=11% Similarity=0.036 Sum_probs=225.4
Q ss_pred CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHH
Q 042941 60 GYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIE 139 (481)
Q Consensus 60 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 139 (481)
+...++.....-..-+-..+++.+..++++.+.+. +++....+..=|..+...|+..+...+=..+++.- +-.+.
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~----dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~ 313 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEK----DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKAL 313 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh----CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCc
Confidence 44567777778888888999999999999999987 66657777777778888999888888888888753 44667
Q ss_pred hHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHH
Q 042941 140 DFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYS 219 (481)
Q Consensus 140 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~ 219 (481)
+|-++.--|.-.|...+|.+.|.+.....+.=...|-.+...|. -.++.++|+..|....+.=..... .+--+.--|.
T Consensus 314 sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa-~e~EhdQAmaaY~tAarl~~G~hl-P~LYlgmey~ 391 (611)
T KOG1173|consen 314 SWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFA-GEGEHDQAMAAYFTAARLMPGCHL-PSLYLGMEYM 391 (611)
T ss_pred chhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhh-hcchHHHHHHHHHHHHHhccCCcc-hHHHHHHHHH
Confidence 88888888888899999999998855443344557888888888 899999999999877654111111 1122334578
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc--CCC----CChhhHHHHHHHHHhcCC
Q 042941 220 KARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK--GVA----PNVVTYNSLIKPLCKARK 293 (481)
Q Consensus 220 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~----~~~~~~~~li~~~~~~g~ 293 (481)
+.+++..|.++|.+..... +.|+...+-+.-.....+.+.+|...|+..... .+. .-..+++.|-.+|.+.+.
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred HhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 8999999999999988874 668888888888888899999999999877621 111 134567888899999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042941 294 LDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISE 373 (481)
Q Consensus 294 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 373 (481)
+++|+..+++..... +.+..++.++.-.|...|+++.|.+.|.+..-
T Consensus 471 ~~eAI~~~q~aL~l~---------------------------------~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLS---------------------------------PKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHHHHHHcC---------------------------------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999887752 45777889999999999999999999999876
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 042941 374 NGNGPDRSSYTALIHALF 391 (481)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~ 391 (481)
+.|+-.+-..++..+.
T Consensus 518 --l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 518 --LKPDNIFISELLKLAI 533 (611)
T ss_pred --cCCccHHHHHHHHHHH
Confidence 5678777777766444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.8e-07 Score=82.35 Aligned_cols=427 Identities=13% Similarity=0.077 Sum_probs=274.0
Q ss_pred HHHHHHHHHh-hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 042941 32 ELVSEVLSWV-RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILI 110 (481)
Q Consensus 32 ~~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li 110 (481)
..+..++..+ .+++...+.+.+.+....+-+ ..+.....-.+...|+-++|.+....-.+. |+.|...|+.+.
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eH--geslAmkGL~L~~lg~~~ea~~~vr~glr~----d~~S~vCwHv~g 82 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEH--GESLAMKGLTLNCLGKKEEAYELVRLGLRN----DLKSHVCWHVLG 82 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCcc--chhHHhccchhhcccchHHHHHHHHHHhcc----CcccchhHHHHH
Confidence 3456666666 467777888888877644433 445556666677889999999988877665 666788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHH
Q 042941 111 RRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSR 190 (481)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (481)
-.+....++++|+..|..+...+ +-|...+.-+--.-.+.|+++.....-..+-...+.....|..+..++. -.|+..
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~-L~g~y~ 160 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQH-LLGEYK 160 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHH-HHHHHH
Confidence 88999999999999999998865 3356677766666666677776665555544444556677888888877 899999
Q ss_pred HHHHHHHHHHhcCC-cccHHhHHHHH------HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHcCCChHHH
Q 042941 191 EAERVWMEMSQRGI-CYDVVSFSCII------SCYSKARNLHKVLRLFDQMKRMGIECDRKVY-NAVIHALAKGRLVKDA 262 (481)
Q Consensus 191 ~a~~~~~~~~~~g~-~~~~~~~~~ll------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a 262 (481)
.|..+++...+... .|+...+.... ......|.++.|.+.+..-... ..|...+ ..-...+.+.+++++|
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhH
Confidence 99999999887642 45655554322 2345678888888877665543 2344433 3456678899999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHH-HHHhc-CCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhchhHHHHHHHHHH
Q 042941 263 ISLMKSMEEKGVAPNVVTYNSLIK-PLCKA-RKLDEARQAFDEMLQRG---ISPTIRTYHAFLDIIRTGEEVFGLLESMR 337 (481)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~li~-~~~~~-g~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~~~~~~~~~~~~ 337 (481)
..++..+... .||..-|...+. ++.+. +..+....+|....+.- ..|-....+.+ ..-.-...+...+..+.
T Consensus 239 ~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl-~~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 239 VKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVL-NGEELKEIVDKYLRPLL 315 (700)
T ss_pred HHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHh-CcchhHHHHHHHHHHHh
Confidence 9999999987 456666655544 44333 33333336676665542 22222222222 22222233466777777
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CC----------CCCCHHHHH--HHHHHHHhcCCHHHHHH
Q 042941 338 KMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISE----NG----------NGPDRSSYT--ALIHALFLNGKLEEAHQ 401 (481)
Q Consensus 338 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~----------~~~~~~~~~--~l~~~~~~~g~~~~A~~ 401 (481)
+.|+++ ++..+...|-.-...+-..++.-.+.. .| -+|+...|. .++..|-+.|+++.|..
T Consensus 316 ~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~ 392 (700)
T KOG1156|consen 316 SKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE 392 (700)
T ss_pred hcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 778765 344444444332222222222222211 11 145665554 46788999999999999
Q ss_pred HHHHHHHCCCCCCHhHHH-HHHHHHhhhhHHHHHHHHHhhcCccC-CCCccc--cccccccchhhccCccccchhcccc
Q 042941 402 YYMEMKEKQLLPEPKTDE-LLQDWSYNKQFVERQIASLKAHQPQS-GQNTRV--ISKKSDQDREFLQQPETRRVVRHQG 476 (481)
Q Consensus 402 ~~~~m~~~~~~p~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--l~~~~~~~~~~~~a~~~r~~~~~~~ 476 (481)
+++....+ .|+.+-.- .=.+.+.-.|+.+++...+.+.+.-| ++.+.. -++...+..+.++|.++-.+-.+-|
T Consensus 393 yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 393 YIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 99998864 56654433 33355666778888887777776633 333332 3556667777777777776666555
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-07 Score=87.96 Aligned_cols=242 Identities=16% Similarity=0.100 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-----CC-CCCHH-hHHHHHHHHHcCCChhhHHHHHhhcc-------CC-
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRF-----KF-AVGIE-DFQGLLSALCRYKNVQDAEHLMFCNK-------DV- 167 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~- 167 (481)
..+...+...|...|++++|+.+++...+. |. .|... ..+.+...|...+++++|..+|+++. ..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666888899999999999998887754 21 23333 33446678888888888888886631 11
Q ss_pred CCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCc-ccH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--
Q 042941 168 FPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR-----GIC-YDV-VSFSCIISCYSKARNLHKVLRLFDQMKRMG-- 238 (481)
Q Consensus 168 ~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~-----g~~-~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-- 238 (481)
.+.-..+++.|...|. +.|++++|...+++..+. |.. |.. ..++.+...|...+++++|..+++...+.-
T Consensus 279 h~~va~~l~nLa~ly~-~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYY-KQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 2223345666777788 888888888877765432 222 222 235566677788888888888887655421
Q ss_pred -CCC----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC-------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 239 -IEC----DRKVYNAVIHALAKGRLVKDAISLMKSMEEKG-------VAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 239 -~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 306 (481)
+.+ -..+++.|...|...|++++|.++|+.+.+.. ..-....++.+...|.+.+++.+|..+|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 111 23577888888888888888888888776431 111234566777788888888888888776432
Q ss_pred CCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042941 307 RGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMG--CQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISE 373 (481)
Q Consensus 307 ~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 373 (481)
- +...| .+-...+|..|...|.+.|+++.|.++.+....
T Consensus 438 i----------------------------~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 438 I----------------------------MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred H----------------------------HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 1 11111 122345788888899999999999888877653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-08 Score=91.04 Aligned_cols=152 Identities=13% Similarity=0.045 Sum_probs=70.5
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
+++.-.|.+.|+..+.-..- +...|..+..+|....+.++.+..|....+. |+.++.+|..-.....-.+++++
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~--~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l----dp~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPA--FNSLYIKRAAAYADENQSEKMWKDFNKAEDL----DPENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred cCCchhhhhhHHHHHhcCcc--cchHHHHHHHHHhhhhccHHHHHHHHHHHhc----CCCCCchhHhHHHHHHHHHHHHH
Confidence 34444444555444422211 1111444444555555555555555555443 33334444444444444455555
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQ 201 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 201 (481)
|..=|++..+.+ +-+...|..+.-+.-+.+.++++...|++.+..+|.-+..|+.....+. ..++++.|.+.|+...+
T Consensus 413 A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLt-DqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILT-DQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHh-hHHhHHHHHHHHHHHHh
Confidence 555555544432 1123333334444444445555555555554445555555555555555 55555555555554433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.8e-07 Score=84.44 Aligned_cols=254 Identities=13% Similarity=0.060 Sum_probs=180.5
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhc-----
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAV----- 116 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~----- 116 (481)
.++.++|++.++... ..+.............+.+.|+.++|..+|..+.++ +|.+..-|..+..+..-.
T Consensus 17 ~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r----NPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 17 AGDYEEALEHLEKNE--KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR----NPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred CCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHhhhccccc
Confidence 588999999998653 223344667778889999999999999999999998 444566677777666333
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHH-hh-ccCCCCCchHhHHHHHHHHHHhcCCHHHHHH
Q 042941 117 HDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM-FC-NKDVFPFNTKSFNIILNGWCNIIGSSREAER 194 (481)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~-~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~ 194 (481)
.+.+....+|+.+...- |.......+.-.+.....+.....-| .. +..|+| .+|+.+-..|. ......-..+
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~-d~~K~~~i~~ 164 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYK-DPEKAAIIES 164 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHc-ChhHHHHHHH
Confidence 35788889999887643 44333333332233323343333222 22 445543 35555555555 5555555666
Q ss_pred HHHHHHhc----C----------CcccHH--hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 042941 195 VWMEMSQR----G----------ICYDVV--SFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRL 258 (481)
Q Consensus 195 ~~~~~~~~----g----------~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 258 (481)
++...... + -.|+.. ++..+...|...|++++|++.++..+++. +..+..|..-.+.+-..|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCC
Confidence 66655432 1 123332 44566778889999999999999999873 3347788999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042941 259 VKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGI 309 (481)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 309 (481)
+.+|.+.++...+.... |...-+..+..+.++|+.++|..++....+.+.
T Consensus 244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 99999999999998765 888888899999999999999999999987764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.5e-07 Score=82.46 Aligned_cols=196 Identities=12% Similarity=0.034 Sum_probs=99.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CCh--hhHHHHHHHHH
Q 042941 213 CIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVA-PNV--VTYNSLIKPLC 289 (481)
Q Consensus 213 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~--~~~~~li~~~~ 289 (481)
.+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++....... |+. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 34445556666666666666666553 334455555666666666666666666665543221 111 12334555566
Q ss_pred hcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHhchh------HHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhc
Q 042941 290 KARKLDEARQAFDEMLQRGI-SPTIRTY-H--AFLDIIRTGE------EVFGLLESMRKMG-CQPTNDTYIMLIKKFSRW 358 (481)
Q Consensus 290 ~~g~~~~a~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 358 (481)
..|++++|..++++...... .+..... + .++..+...+ ....+........ .............++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 66666666666666543221 1111111 1 1111111111 1111111111110 011112223567778899
Q ss_pred CChhHHHHHHHHHHHCCCC------C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 359 RQFGNVFKVWNEISENGNG------P--DRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 359 g~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
|+.+.|..+++.+...... . ..........++...|++++|.+.+.+....
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999988763221 0 1112222334566899999999999887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.3e-07 Score=86.45 Aligned_cols=398 Identities=14% Similarity=0.092 Sum_probs=248.6
Q ss_pred CCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-C
Q 042941 59 SGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAV-G 137 (481)
Q Consensus 59 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~ 137 (481)
..+.-+...|..+.-++.+.|+++.+-+.|++...- .......|..+...+...|.-..|..+++........| +
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~----~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF----SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh----hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCc
Confidence 344568889999999999999999999999987654 22236788888888999999999999998876544234 3
Q ss_pred HHhHHHHHHHHH-cCCChhhHHHHHhhccC---C--CCCchHhHHHHHHHHHH----------hcCCHHHHHHHHHHHHh
Q 042941 138 IEDFQGLLSALC-RYKNVQDAEHLMFCNKD---V--FPFNTKSFNIILNGWCN----------IIGSSREAERVWMEMSQ 201 (481)
Q Consensus 138 ~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~---~--~~~~~~~~~~l~~~~~~----------~~~~~~~a~~~~~~~~~ 201 (481)
+..+-..-..|. +.+.+++++..-.++.+ + .......|..+.-+|.. +.....++++.+++..+
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 333333333343 44666666665544221 1 11122333333333321 11234567788888877
Q ss_pred cCCc-ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCCChh
Q 042941 202 RGIC-YDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK-GVAPNVV 279 (481)
Q Consensus 202 ~g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~ 279 (481)
.+.. |+..-| +.--|+-.++.+.|.+...+..+.+-..+...|..+.-.+...+++.+|+.+.+...+. |. |..
T Consensus 473 ~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~ 548 (799)
T KOG4162|consen 473 FDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHV 548 (799)
T ss_pred cCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhh
Confidence 6543 433333 23346778899999999999998755678899999999999999999999999876543 21 111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------------C--CCC-----CHHHHHHHHHHHhchhHHHH
Q 042941 280 TYNSLIKPLCKARKLDEARQAFDEMLQR---------------------G--ISP-----TIRTYHAFLDIIRTGEEVFG 331 (481)
Q Consensus 280 ~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------------~--~~p-----~~~~~~~li~~~~~~~~~~~ 331 (481)
....-+..-...|+.++++.....+... | ..+ ...++..+..-.........
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 1111122222356666665554443210 0 000 11122222111110000000
Q ss_pred HHHHHHHcCCC--CC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042941 332 LLESMRKMGCQ--PT------NDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYY 403 (481)
Q Consensus 332 ~~~~~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 403 (481)
.-..+...... |+ ...|......+.+.+..++|...+.+..... +-....|......+...|.+++|.+.|
T Consensus 629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 00001111111 22 1235566777889999999998888887753 335667777778889999999999999
Q ss_pred HHHHHCCCCCCH-hHHHHHHHH---HhhhhHHHH--HHHHHhhcCccCCCCccccccccccchhhccCcc
Q 042941 404 MEMKEKQLLPEP-KTDELLQDW---SYNKQFVER--QIASLKAHQPQSGQNTRVISKKSDQDREFLQQPE 467 (481)
Q Consensus 404 ~~m~~~~~~p~~-~~~~~l~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 467 (481)
..... +.|+. .+...+... .++.+.++. .++...+.+|.++++|..+|.++.++|+.++|.+
T Consensus 708 ~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 708 LVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred HHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 98876 45544 333344333 455666666 8899999999999999999999999999987754
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.1e-08 Score=89.17 Aligned_cols=243 Identities=14% Similarity=0.155 Sum_probs=139.8
Q ss_pred HhHHHHHHHHHcCCChhhHHHHHhhccCC-------CCCchHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCc
Q 042941 139 EDFQGLLSALCRYKNVQDAEHLMFCNKDV-------FPFNTKS-FNIILNGWCNIIGSSREAERVWMEMSQR-----GIC 205 (481)
Q Consensus 139 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~-~~~l~~~~~~~~~~~~~a~~~~~~~~~~-----g~~ 205 (481)
.++..+...|...|+++.|..++...... ..|...+ .+.+...|. ..+++++|..+|+++... |..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~-~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYR-SLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 44555666777777777777666542111 1222222 223444555 666777777666665432 211
Q ss_pred -c-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHc---C
Q 042941 206 -Y-DVVSFSCIISCYSKARNLHKVLRLFDQMKRM-----G-IECDR-KVYNAVIHALAKGRLVKDAISLMKSMEEK---G 273 (481)
Q Consensus 206 -~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~ 273 (481)
| -..+++.|...|.+.|++++|...++...+. | ..|.+ ..++.+...|...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1 1234555556666777766666555544321 1 11121 22344555566666677666666654322 1
Q ss_pred CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHH
Q 042941 274 VAPN----VVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYI 349 (481)
Q Consensus 274 ~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (481)
+.++ ..+++.+...|...|++++|.+++++.+... ++.......-....++
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~-------------------------~~~~~~~~~~~~~~l~ 413 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL-------------------------RELLGKKDYGVGKPLN 413 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH-------------------------HhcccCcChhhhHHHH
Confidence 1111 2356666666666777777777766654421 0000111122345678
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 350 MLIKKFSRWRQFGNVFKVWNEISE----NGN-GPD-RSSYTALIHALFLNGKLEEAHQYYMEMK 407 (481)
Q Consensus 350 ~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 407 (481)
.+...|.+.++++.|.++|.+... .|. .|+ ..+|..|...|.+.|++++|+++.+...
T Consensus 414 ~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 414 QLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 889999999999999988876544 332 223 4478899999999999999999988765
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-06 Score=75.66 Aligned_cols=291 Identities=11% Similarity=0.064 Sum_probs=201.6
Q ss_pred HhcCCHHHHHHHHHHHhhcC-CCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHH
Q 042941 114 CAVHDVGRAINAFYAYKRFK-FAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREA 192 (481)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 192 (481)
+-.++...+...+-.+.... ++-+......+.+++...|+.++|+..|+......|.+........-.+. +.|+++..
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~-~eg~~e~~ 285 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLG-QEGGCEQD 285 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHH-hccCHhhH
Confidence 33455555555554444333 34456778889999999999999999999876644444433333333334 78888888
Q ss_pred HHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 193 ERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 193 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
..+...+.... +.+...|-.-.......+++..|+.+-++..+.+ +.+...|..-...+...|++++|.-.|......
T Consensus 286 ~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 286 SALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 88888776542 1133334444455566788999999998888764 445556666667788899999999999998876
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhc----hhHHHHHHHHHHHcCCCCC-HH
Q 042941 273 GVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAF-LDIIRT----GEEVFGLLESMRKMGCQPT-ND 346 (481)
Q Consensus 273 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-i~~~~~----~~~~~~~~~~~~~~~~~~~-~~ 346 (481)
.+ .+...|.-|+.+|...|++.+|...-+...+. ...+..+.+.+ ...|.- .+.+.++++.-.. +.|+ ..
T Consensus 364 ap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~ 439 (564)
T KOG1174|consen 364 AP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTP 439 (564)
T ss_pred ch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHH
Confidence 33 37889999999999999999998777665442 11233444333 122222 2334444444333 2343 34
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 042941 347 TYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEP 415 (481)
Q Consensus 347 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 415 (481)
..+.+...|...|..+.+..+++..... .||....+.|...+...+.+++|.+.|..... +.|+.
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 5667788899999999999999988773 58999999999999999999999999998876 44544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.5e-07 Score=81.57 Aligned_cols=221 Identities=13% Similarity=-0.017 Sum_probs=117.6
Q ss_pred CChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHH
Q 042941 79 RKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAE 158 (481)
Q Consensus 79 g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 158 (481)
+..+.++.-+.++....-..+......|..+...+...|+.+.|...|+...+.. +.++..|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4455566666666543211111113445566666666677777777777666644 224566666777777777777777
Q ss_pred HHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042941 159 HLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMG 238 (481)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 238 (481)
..|++.....|.+...+..+...+. ..|++++|.+.|+...+... +..........+...+++++|...|.......
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALY-YGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 7776655444445556666666666 66777777777776665532 21111111222334556777777775544321
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc---CC--C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 239 IECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK---GV--A-PNVVTYNSLIKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 239 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~--~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
.|+...+ .+. ....|+...+ ..++.+.+. .+ . .....|..+...+.+.|++++|...|+...+.+
T Consensus 196 -~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2222111 122 2223444333 233333321 00 0 123456667777777777777777777776654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-07 Score=83.66 Aligned_cols=226 Identities=10% Similarity=-0.088 Sum_probs=158.3
Q ss_pred CHHHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 44 DWEAAFTFFLWAGKQSGYAHS--TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
..+.++.-+..+.......|+ ...|..+...+.+.|++++|...|+...+. ++.++.+|+.+...+...|+++.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL----RPDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHCCCHHH
Confidence 446677777777654444443 466888888999999999999999999886 44458899999999999999999
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQ 201 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 201 (481)
|...|+...+... -+..++..+..++...|++++|.+.|+......|.+.. ......... ..+++++|...|.....
T Consensus 117 A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-~~~~~~l~~-~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY-RALWLYLAE-SKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH-ccCCHHHHHHHHHHHHh
Confidence 9999999998652 24677888889999999999999999886554443432 222222233 67889999999976554
Q ss_pred cCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC
Q 042941 202 RGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM---GI---ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVA 275 (481)
Q Consensus 202 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (481)
.. .|+...+ .+ .....|+...+ +.+..+.+. .. +.....|..+...+.+.|++++|...|++..+.++.
T Consensus 194 ~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 194 KL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred hC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 32 2332222 22 22334554443 344444421 11 123457889999999999999999999999987543
Q ss_pred CChhhHH
Q 042941 276 PNVVTYN 282 (481)
Q Consensus 276 ~~~~~~~ 282 (481)
+..-+.
T Consensus 269 -~~~e~~ 274 (296)
T PRK11189 269 -NFVEHR 274 (296)
T ss_pred -hHHHHH
Confidence 444443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.4e-06 Score=74.90 Aligned_cols=263 Identities=9% Similarity=0.000 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCH-HhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGI-EDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNG 181 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 181 (481)
......+...+...|+.++|+..|+.....+ |+. .......-.+.+.|+++....+...+-.........|-.-...
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQL 309 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhh
Confidence 6666777777777777777777777766533 322 2222233344566666666665555433322333344444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHH
Q 042941 182 WCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKD 261 (481)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (481)
.. ..+++..|+.+-++..+.... +...|-.-...+...+++++|.-.|+...... +-+...|.-|+.+|...|++.+
T Consensus 310 l~-~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 310 LY-DEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hh-hhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHH
Confidence 45 567777777777776665322 33344444456667777777777777776653 3466777778888887777777
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHH-HH-HHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhchhHHHHHHHH
Q 042941 262 AISLMKSMEEKGVAPNVVTYNSLI-KP-LCKARKLDEARQAFDEMLQRGISPTIR----TYHAFLDIIRTGEEVFGLLES 335 (481)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~li-~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~----~~~~li~~~~~~~~~~~~~~~ 335 (481)
|.-+-+...+. +.-+..+.+.+- .. +.....-++|..+++.-.+. .|+.. ...-|...-.+.+++..+++.
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 76655544332 122444444431 11 12233356677777665443 24432 222222223344555666655
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 042941 336 MRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENG 375 (481)
Q Consensus 336 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 375 (481)
... ..||....+.|.+.+.-.+.+.+|.+.|......+
T Consensus 464 ~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 464 HLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 544 36888888899999999999999999998887754
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-05 Score=74.53 Aligned_cols=245 Identities=9% Similarity=0.047 Sum_probs=133.0
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 50 TFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAY 129 (481)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 129 (481)
..|+...+..++..-...|...+......|-++.+..+|++.++. + +..-.--|..++..+++++|-+.+...
T Consensus 123 ~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~---P~~~eeyie~L~~~d~~~eaa~~la~v 195 (835)
T KOG2047|consen 123 RTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----A---PEAREEYIEYLAKSDRLDEAAQRLATV 195 (835)
T ss_pred HHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----C---HHHHHHHHHHHHhccchHHHHHHHHHh
Confidence 444444444444444455666666666777778888888887765 4 555666777778888888888877776
Q ss_pred hhcC------CCCCHHhHHHHHHHHHcCCChhh---HHHHHhhccCCCC-CchHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 130 KRFK------FAVGIEDFQGLLSALCRYKNVQD---AEHLMFCNKDVFP-FNTKSFNIILNGWCNIIGSSREAERVWMEM 199 (481)
Q Consensus 130 ~~~~------~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 199 (481)
+... .+.+...|..+.+..++..+.-. ...++......++ .-...|.+|..-|. +.|.+++|.++|++.
T Consensus 196 ln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI-r~g~~ekarDvyeea 274 (835)
T KOG2047|consen 196 LNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI-RSGLFEKARDVYEEA 274 (835)
T ss_pred cCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHH
Confidence 5321 12233445555555554433222 2233332222221 11235667777777 777777777777665
Q ss_pred HhcCCcccHHhHHHHHHHHHh-----------------------------------------------------------
Q 042941 200 SQRGICYDVVSFSCIISCYSK----------------------------------------------------------- 220 (481)
Q Consensus 200 ~~~g~~~~~~~~~~ll~~~~~----------------------------------------------------------- 220 (481)
...-. +..-|..+.++|+.
T Consensus 275 i~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW 352 (835)
T KOG2047|consen 275 IQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEW 352 (835)
T ss_pred HHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHH
Confidence 44311 11111111111111
Q ss_pred -------cCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC---hhhHHHH
Q 042941 221 -------ARNLHKVLRLFDQMKRMGIEC------DRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPN---VVTYNSL 284 (481)
Q Consensus 221 -------~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l 284 (481)
.|+..+....|.+..+. +.| -...|..+.+.|-.+|+++.|..+|++..+-..+-- ..+|..-
T Consensus 353 ~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~w 431 (835)
T KOG2047|consen 353 HKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAW 431 (835)
T ss_pred HhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHH
Confidence 12333334444443332 111 123456777778888888888888888876533311 2344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 042941 285 IKPLCKARKLDEARQAFDEML 305 (481)
Q Consensus 285 i~~~~~~g~~~~a~~~~~~m~ 305 (481)
...=.++.+++.|+++++...
T Consensus 432 aemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 432 AEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred HHHHHhhhhHHHHHHHHHhhh
Confidence 455556677788887777653
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.6e-07 Score=73.80 Aligned_cols=198 Identities=11% Similarity=-0.024 Sum_probs=114.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHH
Q 042941 105 TLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCN 184 (481)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 184 (481)
+...|.-.|...|+...|..-+++.++.+ +-+..+|..+...|.+.|+.+.|.+-|++.....|.+..+.|-....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC- 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC- 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH-
Confidence 34445555666666666666666666543 1234455555566666666666666666554444555556666666666
Q ss_pred hcCCHHHHHHHHHHHHhcC-CcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 042941 185 IIGSSREAERVWMEMSQRG-ICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAI 263 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 263 (481)
..|++++|...|++....- ..-...+|..+.-+..+.|+.+.|.+.|++..+.. +-...+.-.+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 6666666666666655431 11123455666666666666666666666666653 223445555666666666666666
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 264 SLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 306 (481)
..++.....+. ++..+.-..|+.--..|+.+.+.++=.++.+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66666665544 5666666666666666666666665555544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-07 Score=79.09 Aligned_cols=325 Identities=15% Similarity=0.119 Sum_probs=160.2
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHH-HHH
Q 042941 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQG-LLS 146 (481)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~ 146 (481)
+.+.+..+.+..++++|++++..-.++ ++.+....+.+..+|-...++..|-..|+.+-.. .|...-|.. -..
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er----~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER----SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc----CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 344444455555555555555554444 2223444555555555555555555555555432 233322221 122
Q ss_pred HHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHH--HHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCH
Q 042941 147 ALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNG--WCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNL 224 (481)
Q Consensus 147 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~ 224 (481)
.+-+.+.+..|+++...+.+. ++...-..-+.+ .. ..+++..+..++++....| +..+.+...-...+.|++
T Consensus 87 SLY~A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkY-se~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN--PALHSRVLQLQAAIKY-SEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhc-ccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 333444455555555444332 111111111111 11 3455555555555554322 222222222333455555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-------------C--------------
Q 042941 225 HKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAP-------------N-------------- 277 (481)
Q Consensus 225 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~-------------- 277 (481)
+.|.+-|+...+.+---....|+..+. ..+.|+++.|++...++.+.|++- |
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 555555555554321222344443332 234455555555555555544321 1
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHH--HHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042941 278 -VVTYNSLIKPLCKARKLDEARQAFDEMLQRG-ISPTIRTYHAF--LDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIK 353 (481)
Q Consensus 278 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 353 (481)
+..+|.-...+.+.|+++.|.+.+-.|.-+. ...|++|...+ .++-++.++...-+..+.+.+ +....||..++-
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLl 318 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQN-PFPPETFANLLL 318 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcC-CCChHHHHHHHH
Confidence 1122333334567789999999888886442 34466665543 333344444455556666554 345678999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 042941 354 KFSRWRQFGNVFKVWNEISENGN-GPDRSSYTALIHALF-LNGKLEEAHQYYMEMK 407 (481)
Q Consensus 354 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~ 407 (481)
.||+..-++.|-+++.+-..... -.+...|+. +.++. -.-..++|++=++.+.
T Consensus 319 lyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999988765433211 123444543 34443 3445677766555543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.9e-07 Score=72.59 Aligned_cols=199 Identities=8% Similarity=-0.060 Sum_probs=162.3
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHH
Q 042941 66 REYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLL 145 (481)
Q Consensus 66 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 145 (481)
.+..-+.-.|.+.|++..|..-+++.++. |+.+..+|..+...|-+.|..+.|.+.|++..+.. +-+..+.|...
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~----DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG 110 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEH----DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhh
Confidence 34556667788999999999999999987 66678899999999999999999999999998865 33667888889
Q ss_pred HHHHcCCChhhHHHHHhhccC--CCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCC
Q 042941 146 SALCRYKNVQDAEHLMFCNKD--VFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARN 223 (481)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~ 223 (481)
-.+|..|.+++|...|++... ..+.-..+|.-+.-+.. +.|+++.|...|++..+.... ...+.-.+.....+.|+
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal-~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCAL-KAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGD 188 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHh-hcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhccc
Confidence 999999999999999988432 24445567777777777 899999999999998877433 33456677788889999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 224 LHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 224 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
+..|...++.....+. ++..+.-..|+.--..|+.+.+.+.=.++...
T Consensus 189 y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 189 YAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred chHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999888874 88888888888888899988888776666654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-05 Score=74.23 Aligned_cols=156 Identities=6% Similarity=-0.087 Sum_probs=72.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHH---HHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCC
Q 042941 112 RYCAVHDVGRAINAFYAYKRFKFAVGIEDFQG---LLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGS 188 (481)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 188 (481)
.+...|++++|...++...+.. +.+...+.. ........+..+.+.+.+.......+........+...+. ..|+
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~-~~G~ 129 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLE-EAGQ 129 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHH-HcCC
Confidence 3444566666666666555432 112222221 1111112233333444433322222222233333344444 5666
Q ss_pred HHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHcCCChHHHHHH
Q 042941 189 SREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGI-ECDR--KVYNAVIHALAKGRLVKDAISL 265 (481)
Q Consensus 189 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~a~~~ 265 (481)
+++|...+++..+.... +...+..+..++...|++++|...++....... .|+. ..|..+...+...|++++|..+
T Consensus 130 ~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 130 YDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred HHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 66666666666554322 334455555566666666666666665554321 1121 2233455556666666666666
Q ss_pred HHHHH
Q 042941 266 MKSME 270 (481)
Q Consensus 266 ~~~~~ 270 (481)
+++..
T Consensus 209 ~~~~~ 213 (355)
T cd05804 209 YDTHI 213 (355)
T ss_pred HHHHh
Confidence 66654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-07 Score=83.22 Aligned_cols=149 Identities=17% Similarity=0.176 Sum_probs=76.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cC
Q 042941 217 CYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCK----AR 292 (481)
Q Consensus 217 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g 292 (481)
.+...|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+. . +..+...+..+++. .+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~-eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D-EDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S-CCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C-CcHHHHHHHHHHHHHHhCch
Confidence 344455666665555431 23444555555666666666666666666543 1 22333333333332 22
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 042941 293 KLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEIS 372 (481)
Q Consensus 293 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 372 (481)
.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..
T Consensus 182 ~~~~A~y~f~El~~~---------------------------------~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK---------------------------------FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp CCCHHHHHHHHHHCC---------------------------------S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhc---------------------------------cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455555555555432 23455566666666666677777776666665
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 042941 373 ENGNGPDRSSYTALIHALFLNGKL-EEAHQYYMEMKE 408 (481)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~ 408 (481)
..+. -++.+...++.+....|+. +.+.+++.++..
T Consensus 229 ~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 229 EKDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred Hhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 5432 2445555566666666665 455566666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.8e-05 Score=67.08 Aligned_cols=376 Identities=11% Similarity=0.056 Sum_probs=199.0
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
.++...|..+++... ..+-.-...+--.+...+.+.|++++|...|..+.+..-.| ...+..+.-.+.-.|.+.+
T Consensus 35 ~rDytGAislLefk~-~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~----~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKL-NLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAP----AELGVNLACCKFYLGQYIE 109 (557)
T ss_pred cccchhHHHHHHHhh-ccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCC----cccchhHHHHHHHHHHHHH
Confidence 367788888888774 22211222333445556678899999999999887753222 4555556666666788888
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQ 201 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 201 (481)
|..+-.... .++-.-..++....+.++-++-..+.+.+.+.. .---++..... ..-.+.+|+++|.....
T Consensus 110 A~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~----EdqLSLAsvhY-mR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 110 AKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL----EDQLSLASVHY-MRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH----HHHHhHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 887765532 234444456666677777777666666655432 22223333333 45667788888888776
Q ss_pred cCCcccHHhHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCh-------------------
Q 042941 202 RGICYDVVSFSCII-SCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAK--GRLV------------------- 259 (481)
Q Consensus 202 ~g~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~------------------- 259 (481)
. .|+-...|..+ -+|.+..-++-+.+++.-..+. ++.+....|.......+ +|+.
T Consensus 180 d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~ 256 (557)
T KOG3785|consen 180 D--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFI 256 (557)
T ss_pred c--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhH
Confidence 5 23444444333 3556666677777777666554 22233333332222222 1111
Q ss_pred --------------HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------------------
Q 042941 260 --------------KDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQR------------------ 307 (481)
Q Consensus 260 --------------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------------ 307 (481)
+.|++++-.+.+. -| ..--.++-.|.+.+++.+|..+.+++.-.
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe 332 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQE 332 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhh
Confidence 1111111111111 01 11122333455666666666666554211
Q ss_pred --------------------C----CCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 042941 308 --------------------G----ISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGN 363 (481)
Q Consensus 308 --------------------~----~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 363 (481)
+ --|...+..+.+-.+.+.+++.-.+..+...-...|...| .+..+++-.|++.+
T Consensus 333 ~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~e 411 (557)
T KOG3785|consen 333 TGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVE 411 (557)
T ss_pred cCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHH
Confidence 0 1122222222222222223333333333322222333333 36778888899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH-HHhhhhH---HHHHHHHH
Q 042941 364 VFKVWNEISENGNGPDRSSYT-ALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQD-WSYNKQF---VERQIASL 438 (481)
Q Consensus 364 a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~-~~~~~~~---~~~~~~~~ 438 (481)
|.++|-++....++ |..+|- .|.++|.+.++++.|++++-++- ...+..+..-++. -|.+.++ +.+++..+
T Consensus 412 aEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 412 AEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred HHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 99999887765554 455555 45678899999999987765442 2233333333332 3333333 34666666
Q ss_pred hhcCcc
Q 042941 439 KAHQPQ 444 (481)
Q Consensus 439 ~~~~~~ 444 (481)
...+|.
T Consensus 488 E~lDP~ 493 (557)
T KOG3785|consen 488 EILDPT 493 (557)
T ss_pred HccCCC
Confidence 666653
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.7e-07 Score=75.30 Aligned_cols=289 Identities=12% Similarity=0.038 Sum_probs=188.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHH-HHHHHH
Q 042941 105 TLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNI-ILNGWC 183 (481)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-l~~~~~ 183 (481)
-+.+.+..+++..++..|++++..-.+.. +.+......|..+|-...++..|-..++++....| ...-|.. -...+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P-~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP-ELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh-HHHHHHHHHHHHHH
Confidence 35566777788899999999998777654 22666778888999999999999999998766543 3333332 345556
Q ss_pred HhcCCHHHHHHHHHHHHhcCCcccHHhHHHHH--HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHH
Q 042941 184 NIIGSSREAERVWMEMSQRGICYDVVSFSCII--SCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKD 261 (481)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (481)
+.+.+..|+++...|.+. ++...-..-+ ......+++..+..++++....| +..+.+.......+.|+++.
T Consensus 90 -~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 90 -KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred -HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 789999999999988764 2222111112 22345778888888888766433 45555556666678999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------CCHH--------HHHHHH
Q 042941 262 AISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGIS-------------PTIR--------TYHAFL 320 (481)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-------------p~~~--------~~~~li 320 (481)
|.+-|+...+-+---....|+..+..| +.|+++.|++...+++++|++ ||+. ..+.++
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 999999987764333567788766555 668999999999999988753 2321 223344
Q ss_pred HHHhc-------hhHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042941 321 DIIRT-------GEEVFGLLESMRKM----GCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHA 389 (481)
Q Consensus 321 ~~~~~-------~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (481)
.++.- .++....-+.+... ....|+.|...+.-.= -.+++....+-+.-+..... ....|+..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 43321 11112222222221 1223555655443221 23456666666666666533 346688889999
Q ss_pred HHhcCCHHHHHHHHHH
Q 042941 390 LFLNGKLEEAHQYYME 405 (481)
Q Consensus 390 ~~~~g~~~~A~~~~~~ 405 (481)
||+..-++-|-.++-+
T Consensus 320 yCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAE 335 (459)
T ss_pred HhhhHHHhHHHHHHhh
Confidence 9999999988887655
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.2e-09 Score=57.54 Aligned_cols=32 Identities=34% Similarity=0.634 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 375 GNGPDRSSYTALIHALFLNGKLEEAHQYYMEM 406 (481)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (481)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56777777777777777777777777777776
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.9e-05 Score=71.94 Aligned_cols=393 Identities=13% Similarity=0.058 Sum_probs=236.1
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
.++.+.|+..|.....-. ++|...|+.-..+|+..|++++|++=-.+-.+. .|+ =+..|+....++.-.|++++
T Consensus 15 ~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~--w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPD--WAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred cccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCc--hhhHHHHhHHHHHhcccHHH
Confidence 478899999999886555 358889999999999999999998766665554 444 26789999999999999999
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhh------ccCC----CCCchHhHHHHHHHHHH-------
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFC------NKDV----FPFNTKSFNIILNGWCN------- 184 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~------~~~~----~~~~~~~~~~l~~~~~~------- 184 (481)
|+..|.+-++.. +-+...++.+..++... . .+.+.|.. +... .......|..++..+-.
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999988754 22455667777777211 1 11122211 1000 00011122223222210
Q ss_pred --hcCCHHHHHHHHHHH-----HhcC-------Ccc----------------------cHHhHHHHHHHHHhcCCHHHHH
Q 042941 185 --IIGSSREAERVWMEM-----SQRG-------ICY----------------------DVVSFSCIISCYSKARNLHKVL 228 (481)
Q Consensus 185 --~~~~~~~a~~~~~~~-----~~~g-------~~~----------------------~~~~~~~ll~~~~~~~~~~~a~ 228 (481)
.......+..++... ...| ..| -..-...+.++..+..+++.+.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 111111222211110 0001 111 0112445677777888899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHH-------HHHHHHhcCCHHHHHHHH
Q 042941 229 RLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNS-------LIKPLCKARKLDEARQAF 301 (481)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~g~~~~a~~~~ 301 (481)
+-+....... -+..-++....+|...|.+..+...-+...+.|-. ...-|+. +-.+|.+.++++.|...|
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 9888888764 45666677778899999888887777776665432 2222333 233566678899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 042941 302 DEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTND-TYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDR 380 (481)
Q Consensus 302 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 380 (481)
.+.......|+.. +.+...+++.+..+...- +.|... -...-...+.+.|++..|...+.++.+.. +-|.
T Consensus 322 ~kaLte~Rt~~~l------s~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da 392 (539)
T KOG0548|consen 322 QKALTEHRTPDLL------SKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDA 392 (539)
T ss_pred HHHhhhhcCHHHH------HHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cchh
Confidence 9876655444432 222222222222221111 122221 11222556778899999999999988876 3477
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH-HH---HHHHHHhhhhHHHHHHHHHhhcCccCCCCcccccccc
Q 042941 381 SSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT-DE---LLQDWSYNKQFVERQIASLKAHQPQSGQNTRVISKKS 456 (481)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 456 (481)
..|....-+|.+.|.+..|++-.+.-++. .|+... |. ..+....+...+.+++....+.+|.+.+....+...+
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCV 470 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 78888888899999999888887777664 343322 11 2222333444555666777777777766666666555
Q ss_pred cc
Q 042941 457 DQ 458 (481)
Q Consensus 457 ~~ 458 (481)
..
T Consensus 471 ~a 472 (539)
T KOG0548|consen 471 EA 472 (539)
T ss_pred HH
Confidence 44
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.4e-05 Score=64.29 Aligned_cols=312 Identities=13% Similarity=0.103 Sum_probs=186.9
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhH-
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDF- 141 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~- 141 (481)
.++.-.--+...+...|++..|+.-|....+- |+.+..++-.-...|...|+-..|+.-+.+.++ .+||-..-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~AR 109 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHH
Confidence 34555666777788888888888888888776 632333333334467777887778777777776 35654321
Q ss_pred HHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhc
Q 042941 142 QGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKA 221 (481)
Q Consensus 142 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 221 (481)
..-...+.+.|.+++|..=|+.+....+ + .|...++.+-+.... ........+..+.-.
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~~-s--------------~~~~~eaqskl~~~~------e~~~l~~ql~s~~~~ 168 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHEP-S--------------NGLVLEAQSKLALIQ------EHWVLVQQLKSASGS 168 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcCC-C--------------cchhHHHHHHHHhHH------HHHHHHHHHHHHhcC
Confidence 1123456677777777777766433222 1 111111111111110 011122334445667
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 042941 222 RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAF 301 (481)
Q Consensus 222 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 301 (481)
|+...|+.....+.+.. +.|...|..-..+|...|++..|..=++...+..-. ++.++--+-..+...|+.+.++...
T Consensus 169 GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~i 246 (504)
T KOG0624|consen 169 GDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEI 246 (504)
T ss_pred CchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHH
Confidence 78888888888877764 557777777788888888888777766666554322 5555556666677778888777777
Q ss_pred HHHHHCCCCCCHHH----HH---HHHHHHhchhHH---------HHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCC
Q 042941 302 DEMLQRGISPTIRT----YH---AFLDIIRTGEEV---------FGLLESMRKMGCQPT-----NDTYIMLIKKFSRWRQ 360 (481)
Q Consensus 302 ~~m~~~~~~p~~~~----~~---~li~~~~~~~~~---------~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~ 360 (481)
++..+.+ ||... |. .+...+...+.. .+..+...+. .|. ...+..+-.++...|+
T Consensus 247 RECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~ 322 (504)
T KOG0624|consen 247 RECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQ 322 (504)
T ss_pred HHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCC
Confidence 7776653 44321 11 111112111111 1111122222 232 2234556667778899
Q ss_pred hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 361 FGNVFKVWNEISENGNGPD-RSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
+.+|++...+..+. .|+ ..++.--..+|.-...+++|+.-|+...+.
T Consensus 323 ~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 323 FGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 99999999888874 344 778888888999999999999999888764
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00016 Score=67.45 Aligned_cols=178 Identities=9% Similarity=0.063 Sum_probs=94.7
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHH
Q 042941 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLS 146 (481)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 146 (481)
.|-..+..+.++|++......|+..+.. -|-......|...+.-....+-++.++.+|++.++. ++..-+..+.
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALra--LpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRA--LPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHh--CchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 4555555666666666666666665443 111111345555666666666677777777776653 3333455666
Q ss_pred HHHcCCChhhHHHHHhhccC-------CCCCchHhHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCccc--HHhHHHH
Q 042941 147 ALCRYKNVQDAEHLMFCNKD-------VFPFNTKSFNIILNGWCNIIGSSRE---AERVWMEMSQRGICYD--VVSFSCI 214 (481)
Q Consensus 147 ~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~---a~~~~~~~~~~g~~~~--~~~~~~l 214 (481)
-+++.+++++|.+.+..+.. ..+.+...|..+..... +..+.-. ...+++.+... -+| ...|..|
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis-~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SL 254 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLIS-QNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSL 254 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHH-hCcchhcccCHHHHHHhhccc--CcHHHHHHHHHH
Confidence 66777777777766655321 13344555555555544 3322221 22222222221 123 2456677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 042941 215 ISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAK 255 (481)
Q Consensus 215 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (481)
..-|.+.|.++.|..+|++..+. ..+..-|+.+.++|+.
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHH
Confidence 77777777777777777766554 2344444444444443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-07 Score=80.44 Aligned_cols=228 Identities=15% Similarity=0.141 Sum_probs=136.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Q 042941 174 SFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIE-CDRKVYNAVIHA 252 (481)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~ 252 (481)
....+.+++. ..|+++.++ .++.... .|.......+...+....+-+.+..-+++....... .+..........
T Consensus 37 ~~~~~~Rs~i-Alg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i 111 (290)
T PF04733_consen 37 RDFYQYRSYI-ALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATI 111 (290)
T ss_dssp HHHHHHHHHH-HTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 3444556666 666655433 3332222 455555544444443334445555444443333222 223333333456
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHH
Q 042941 253 LAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGL 332 (481)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~ 332 (481)
+...|++++|+++++.. .+.......++.|.+.++++.|.+.++.|.+.+ .|. +...
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~q-------------- 168 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQ-------------- 168 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHH--------------
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHH--------------
Confidence 67789999999888653 366777788999999999999999999998753 221 1111
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042941 333 LESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLL 412 (481)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 412 (481)
...+.+..+...+.+.+|.-+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..+.+..
T Consensus 169 --------------La~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 169 --------------LAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp --------------HHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred --------------HHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 1222333333445799999999998765 5678999999999999999999999999998765422
Q ss_pred CCHhHHHHHH--HHH-hhh-hHHHHHHHHHhhcCccC
Q 042941 413 PEPKTDELLQ--DWS-YNK-QFVERQIASLKAHQPQS 445 (481)
Q Consensus 413 p~~~~~~~l~--~~~-~~~-~~~~~~~~~~~~~~~~~ 445 (481)
++.|..-++ ..+ ++. +..++.+..++..+|+.
T Consensus 234 -~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 234 -DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp -HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred -CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 233333222 233 233 34677888888887764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-05 Score=71.32 Aligned_cols=215 Identities=7% Similarity=-0.048 Sum_probs=146.8
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCCCHHhHHHHH
Q 042941 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH-DVGRAINAFYAYKRFKFAVGIEDFQGLL 145 (481)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll 145 (481)
+++.+-..+...++.++|+.+++.+++. ++.+..+|+.--..+...| ++++++..++.+.+.+.+ +..+|+.-.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l----nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~ 113 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL----NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRR 113 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHH
Confidence 3444445556677888999999998876 4444566766666666666 578999999988876533 555676555
Q ss_pred HHHHcCCCh--hhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhc--
Q 042941 146 SALCRYKNV--QDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKA-- 221 (481)
Q Consensus 146 ~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~-- 221 (481)
-++.+.|.. +++..+++.+....+.+..+|+.....+. ..|+++++++.++++.+.++. +...|+.....+.+.
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~-~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~ 191 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLR-TLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPL 191 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccc
Confidence 445555542 56677777766666778888888888887 888899999999998887655 566676665555444
Q ss_pred -CC----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 042941 222 -RN----LHKVLRLFDQMKRMGIECDRKVYNAVIHALAKG----RLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCK 290 (481)
Q Consensus 222 -~~----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 290 (481)
|. .++.+.....+.... +-|...|+-+...+... +...+|...+.+..+.++. +......|+..|+.
T Consensus 192 l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 192 LGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 22 245666666666653 45677787777777663 3445677777777665443 66677777777775
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.71 E-value=2e-08 Score=55.97 Aligned_cols=32 Identities=59% Similarity=0.977 Sum_probs=17.9
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 273 GVAPNVVTYNSLIKPLCKARKLDEARQAFDEM 304 (481)
Q Consensus 273 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 304 (481)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00028 Score=65.27 Aligned_cols=102 Identities=11% Similarity=0.135 Sum_probs=55.5
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhh-cCHHHHHHHHHHhhhCCCCCCCHHHHHHH--HHHH--hccCChhHHHHHHHHHh
Q 042941 18 MRNKIEECGIKVSSELVSEVLSWVR-NDWEAAFTFFLWAGKQSGYAHSTREYHTM--IAIL--GKVRKFDTAWALIDEMR 92 (481)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--i~~~--~~~g~~~~a~~~~~~~~ 92 (481)
.-..+...+..+...+...|+.... ..+++|+.+.+.- .+ ..++++. =.+| -+.+..++|+..++...
T Consensus 34 ~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~~----~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~ 106 (652)
T KOG2376|consen 34 TANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKN---GA----LLVINSFFFEKAYCEYRLNKLDEALKTLKGLD 106 (652)
T ss_pred HHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---ch----hhhcchhhHHHHHHHHHcccHHHHHHHHhccc
Confidence 3333444443444444555555442 4566776444322 11 1122222 3333 36777888888777332
Q ss_pred cCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 042941 93 GGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFK 133 (481)
Q Consensus 93 ~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 133 (481)
. + +..+...-...+-+.|++++|+.+|+.+.+.+
T Consensus 107 ~-----~--~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 107 R-----L--DDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred c-----c--chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 2 2 24455555666777888888888888886654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00033 Score=73.67 Aligned_cols=333 Identities=12% Similarity=0.009 Sum_probs=198.6
Q ss_pred HHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC------CCCH--HhHHHHH
Q 042941 74 ILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKF------AVGI--EDFQGLL 145 (481)
Q Consensus 74 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------~~~~--~~~~~ll 145 (481)
.+...|+++.+...++.+.......+ +.........+...|+++++...+......-- .+.. .....+.
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~---~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a 459 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLEN---PRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRA 459 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcC---cchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHH
Confidence 34456777777777766532211112 22233444555678999999999887754211 1111 1222233
Q ss_pred HHHHcCCChhhHHHHHhhccCCCCC-c----hHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCc-ccHHhHHHHH
Q 042941 146 SALCRYKNVQDAEHLMFCNKDVFPF-N----TKSFNIILNGWCNIIGSSREAERVWMEMSQR----GIC-YDVVSFSCII 215 (481)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~ll 215 (481)
..+...|+++.|...++......+. + ....+.+...+. ..|++++|...+++.... |.. +...++..+.
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~-~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH-CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 5566889999999998774332211 1 123455555666 799999999999887643 111 1123455666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC--CCC--ChhhHHHH
Q 042941 216 SCYSKARNLHKVLRLFDQMKRM----GIE--C-DRKVYNAVIHALAKGRLVKDAISLMKSMEEKG--VAP--NVVTYNSL 284 (481)
Q Consensus 216 ~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~l 284 (481)
..+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 7788999999999998876552 211 1 22334455666777899999999998875431 111 23334445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHH-----HHHHHh---chhHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 042941 285 IKPLCKARKLDEARQAFDEMLQRGIS-PTIRTYHA-----FLDIIR---TGEEVFGLLESMRKMGCQPT---NDTYIMLI 352 (481)
Q Consensus 285 i~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~-----li~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~l~ 352 (481)
...+...|+++.|...+......... .....+.. .+..+. ..+.+...+........... ...+..+.
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 66777899999999999887542110 01111111 111112 22233333333222111111 11234567
Q ss_pred HHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 353 KKFSRWRQFGNVFKVWNEISEN----GNGPD-RSSYTALIHALFLNGKLEEAHQYYMEMKEKQ 410 (481)
Q Consensus 353 ~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 410 (481)
.++...|++++|...+++.... |..++ ..++..+..++.+.|+.++|...+.+..+..
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 7788999999999999987652 33222 2356677788899999999999999988764
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00043 Score=66.14 Aligned_cols=206 Identities=10% Similarity=-0.043 Sum_probs=137.8
Q ss_pred CCCCHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHH
Q 042941 27 IKVSSELVSEVLSWV--RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQ 104 (481)
Q Consensus 27 ~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 104 (481)
+.-++.++..+--++ +++...+.+.|+... ++..-..+.|+.+...++..|.-..|..+.+.-....-.|+ +..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~--~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps--~~s 394 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQAL--PFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPS--DIS 394 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCC--cch
Confidence 333555555554444 577788888888774 34445778899999999999999999999988766543344 244
Q ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHhhcC----CCCCHHhHHHHHHHHHcCC-----------ChhhHHHHHhhccCCC
Q 042941 105 TLLILIRRYCA-VHDVGRAINAFYAYKRFK----FAVGIEDFQGLLSALCRYK-----------NVQDAEHLMFCNKDVF 168 (481)
Q Consensus 105 ~~~~li~~~~~-~~~~~~a~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~-----------~~~~a~~~~~~~~~~~ 168 (481)
.+...-+.|.. .+..++++....+..... -...+..|..+.-+|...- .-.++++.+++.....
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 44444444444 366777777666665411 1223444555554443221 1234556666654433
Q ss_pred CCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042941 169 PFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM 237 (481)
Q Consensus 169 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 237 (481)
+.|+.+...+.--|+ ..++.+.|.+..++....+..-+...|..+.-.+...+++.+|+.+.+.....
T Consensus 475 ~~dp~~if~lalq~A-~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYA-EQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred CCCchHHHHHHHHHH-HHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 444444444444556 78999999999999999877778999999999999999999999999877653
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00034 Score=64.77 Aligned_cols=212 Identities=8% Similarity=0.008 Sum_probs=116.7
Q ss_pred cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHH
Q 042941 43 NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRA 122 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a 122 (481)
+++++|......+... .+.+..++.+=+-++.+.+++++|+.+.+.-... ..+ ..-+.--..+.-+.+..++|
T Consensus 26 ~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~---~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVI---NSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred hHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhc---chhhHHHHHHHHHcccHHHH
Confidence 4567777777777432 2456777788888888888888888555443221 001 11111112233456788888
Q ss_pred HHHHHHHhhcCCCCC-HHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042941 123 INAFYAYKRFKFAVG-IEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQ 201 (481)
Q Consensus 123 ~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 201 (481)
+..++ |..++ ..+...-...+-+.|++++|..+|..+.....++. ...+.+-+...+-...+. + +..
T Consensus 99 lk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~---d~~~r~nl~a~~a~l~~~-~---~q~ 166 (652)
T KOG2376|consen 99 LKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ---DEERRANLLAVAAALQVQ-L---LQS 166 (652)
T ss_pred HHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH---HHHHHHHHHHHHHhhhHH-H---HHh
Confidence 88877 22332 33555555667788888888888888644322222 122211110000001111 1 222
Q ss_pred cCCcccHHhHHHHH---HHHHhcCCHHHHHHHHHHHHHcC-------CCCCHH-------HHHHHHHHHHcCCChHHHHH
Q 042941 202 RGICYDVVSFSCII---SCYSKARNLHKVLRLFDQMKRMG-------IECDRK-------VYNAVIHALAKGRLVKDAIS 264 (481)
Q Consensus 202 ~g~~~~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~-------~~~~li~~~~~~g~~~~a~~ 264 (481)
....| ..+|..+. -.+...|++.+|+++++...+.+ -.-+.. .-.-+..++...|+-++|..
T Consensus 167 v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 167 VPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred ccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 22222 33444333 34567899999999998884322 111111 11234455677899999999
Q ss_pred HHHHHHHcCC
Q 042941 265 LMKSMEEKGV 274 (481)
Q Consensus 265 ~~~~~~~~~~ 274 (481)
++....+...
T Consensus 246 iy~~~i~~~~ 255 (652)
T KOG2376|consen 246 IYVDIIKRNP 255 (652)
T ss_pred HHHHHHHhcC
Confidence 9999988754
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.5e-05 Score=78.86 Aligned_cols=223 Identities=9% Similarity=0.043 Sum_probs=151.2
Q ss_pred CCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCcc---cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 042941 168 FPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR-GICY---DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDR 243 (481)
Q Consensus 168 ~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~-g~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 243 (481)
.|.+...|-..|.... ..++.++|.++.++.... ++.- -...|.++++.-...|.-+...++|+++.+.. -..
T Consensus 1454 sPNSSi~WI~YMaf~L-elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~ 1530 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHL-ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAY 1530 (1710)
T ss_pred CCCcchHHHHHHHHHh-hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chH
Confidence 4556667777777777 778888888888776553 1111 12356666666666677777778888777753 124
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042941 244 KVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDII 323 (481)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 323 (481)
..|..|...|.+.+.+++|-++++.|.+. ..-....|...+..+.+.++-+.|..++.+..+.- |.
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l--Pk----------- 1596 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL--PK----------- 1596 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc--ch-----------
Confidence 55677778888888888888888887665 22356677777777777777777777777765541 11
Q ss_pred hchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042941 324 RTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYY 403 (481)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 403 (481)
.-......-.+..-.+.|+.+.++.+|+......++ -...|+.++..=.++|+.+.+..+|
T Consensus 1597 ------------------~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1597 ------------------QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred ------------------hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHH
Confidence 011223344445556778888888888888775332 5668888888888889989999999
Q ss_pred HHHHHCCCCCCH--hHHHHHHHHHh
Q 042941 404 MEMKEKQLLPEP--KTDELLQDWSY 426 (481)
Q Consensus 404 ~~m~~~~~~p~~--~~~~~l~~~~~ 426 (481)
++..+.++.|.. ..|...+.+-.
T Consensus 1658 eRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1658 ERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred HHHHhcCCChhHhHHHHHHHHHHHH
Confidence 998888877765 33555555433
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.1e-05 Score=76.24 Aligned_cols=229 Identities=13% Similarity=0.103 Sum_probs=174.4
Q ss_pred CHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCC-----chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhH
Q 042941 137 GIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPF-----NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSF 211 (481)
Q Consensus 137 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 211 (481)
+...|...|....+.++.+.|.+++++....+.+ -...|.++++.-. .-|.-+...++|++..+. .-....|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn-~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLEN-AYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHH-hhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 4456888888999999999999999885433211 2346777777766 778888999999999876 2234567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHh
Q 042941 212 SCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVA-PNVVTYNSLIKPLCK 290 (481)
Q Consensus 212 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~ 290 (481)
..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.+..+.-++ -........++.-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 88999999999999999999999885 3357789999999999999999999999998876222 123344455556667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 042941 291 ARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNE 370 (481)
Q Consensus 291 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 370 (481)
.|+.+.+..+|+...... +.....|+.+++.-.++|+.+.++.+|++
T Consensus 1613 ~GDaeRGRtlfEgll~ay---------------------------------PKRtDlW~VYid~eik~~~~~~vR~lfeR 1659 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY---------------------------------PKRTDLWSVYIDMEIKHGDIKYVRDLFER 1659 (1710)
T ss_pred cCCchhhHHHHHHHHhhC---------------------------------ccchhHHHHHHHHHHccCCHHHHHHHHHH
Confidence 899999999999877652 33456899999999999999999999999
Q ss_pred HHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHH
Q 042941 371 ISENGNGPDRS--SYTALIHALFLNGKLEEAHQY 402 (481)
Q Consensus 371 ~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~ 402 (481)
....++.|-.. .|...+..=-+.|+-+.+..+
T Consensus 1660 vi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1660 VIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 99988766433 555566555566765544433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.7e-05 Score=61.96 Aligned_cols=250 Identities=14% Similarity=0.102 Sum_probs=152.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCH
Q 042941 110 IRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSS 189 (481)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (481)
++-+.-.|++..++..-....... -++..-..+-++|...|.+..... .++.+-.|.......+..... .-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~~~~lqAvr~~a~~~~-~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGKATPLQAVRLLAEYLE-LESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---ccccccCChHHHHHHHHHHhh-Ccchh
Confidence 445555677777776665544322 233444445667777776544332 233333333333333333332 33333
Q ss_pred HH-HHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 042941 190 RE-AERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKS 268 (481)
Q Consensus 190 ~~-a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 268 (481)
+. ..++.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+.+.|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 33445555555444443434444556888888888888776521 333444445556677788888888888
Q ss_pred HHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCC
Q 042941 269 MEEKGVAPNVVTYNSLIKPLCK----ARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPT 344 (481)
Q Consensus 269 ~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~ 344 (481)
|.+. -+..|.+.|.+++++ .+.+..|.-+|++|.++ .+|+
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k---------------------------------~~~T 206 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK---------------------------------TPPT 206 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc---------------------------------cCCC
Confidence 8774 366677777777665 34577777777777664 3788
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 042941 345 NDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEE-AHQYYMEMKE 408 (481)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~ 408 (481)
..+.+....++...|++++|..+++........ ++.+...++.+-...|...+ ..+.+.++..
T Consensus 207 ~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 207 PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 888888888899999999999999998886543 66676667766666666544 4456666654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.0011 Score=65.35 Aligned_cols=301 Identities=11% Similarity=0.081 Sum_probs=129.6
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHH
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQ 142 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (481)
.|+..-+..+.+|...+-+.+-+++++.+.-.+-..+ .+....+.||-...+ -+...+.+..+++...+. |+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fs-e~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~----- 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS-ENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD----- 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccc-cchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh-----
Confidence 4566666777777777777777777777654321111 113344444444333 344555555555544321 12
Q ss_pred HHHHHHHcCCChhhHHHHHhhccCC----------------------CCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 143 GLLSALCRYKNVQDAEHLMFCNKDV----------------------FPFNTKSFNIILNGWCNIIGSSREAERVWMEMS 200 (481)
Q Consensus 143 ~ll~~~~~~~~~~~a~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 200 (481)
+...+...+-+++|..+|+..... -...+..|..+..+-. +.|...+|++-|-+..
T Consensus 1054 -ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL-~~~~v~dAieSyikad 1131 (1666)
T KOG0985|consen 1054 -IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQL-QGGLVKDAIESYIKAD 1131 (1666)
T ss_pred -HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHH-hcCchHHHHHHHHhcC
Confidence 222333444455555555432110 0012233444444444 4444444443332211
Q ss_pred hcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhh
Q 042941 201 QRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVT 280 (481)
Q Consensus 201 ~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 280 (481)
|+..|..+++...+.|.+++..+.+....+..-.|.. =+.++-+|++.++..+.++.+ ..|+...
T Consensus 1132 ------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi-------~gpN~A~ 1196 (1666)
T KOG0985|consen 1132 ------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI-------AGPNVAN 1196 (1666)
T ss_pred ------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh-------cCCCchh
Confidence 3344444444444455554444444444433222222 223444444444443332221 1233333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 042941 281 YNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQ 360 (481)
Q Consensus 281 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 360 (481)
...+-.-|...|.++.|.-+|.. +..|..|...+...|+.....+..++. .+..+|..+-.+|...+.
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA---ns~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA---NSTKTWKEVCFACVDKEE 1264 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc---cchhHHHHHHHHHhchhh
Confidence 33333444444444444333332 222333333333333333333333332 234455555555554444
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042941 361 FGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYME 405 (481)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (481)
+.-| +|....+-....-..-++.-|-..|-+++.+.+++.
T Consensus 1265 FrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1265 FRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred hhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 4332 222222222333344556666666666666655554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00016 Score=70.83 Aligned_cols=183 Identities=10% Similarity=-0.027 Sum_probs=121.3
Q ss_pred cCHHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 43 NDWEAAFTFFLWAGKQSGYAHS-TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
++...|+..|-...+.. ++ ...|..+...|...-+...|...|+...+. |.....+.......|+...+++.
T Consensus 472 K~~~~al~ali~alrld---~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL----Datdaeaaaa~adtyae~~~we~ 544 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD---VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL----DATDAEAAAASADTYAEESTWEE 544 (1238)
T ss_pred hhHHHHHHHHHHHHhcc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CchhhhhHHHHHHHhhccccHHH
Confidence 33344555554443222 22 467888888888877888999999988876 65667788888899999999999
Q ss_pred HHHHHHHHhhcCCC-CCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 122 AINAFYAYKRFKFA-VGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMS 200 (481)
Q Consensus 122 a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 200 (481)
|..+.-..-+.... .....|....-.|.+.++...+..-|+...+..|.|...|..+..+|. .+|.+..|.++|.+..
T Consensus 545 a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~-~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 545 AFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYP-ESGRYSHALKVFTKAS 623 (1238)
T ss_pred HHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHH-hcCceehHHHhhhhhH
Confidence 98884333222110 111223334556677778888888887766666778888888888888 8888888888887776
Q ss_pred hcCCcccHHhHHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 042941 201 QRGICYDVVSFSCI--ISCYSKARNLHKVLRLFDQMKR 236 (481)
Q Consensus 201 ~~g~~~~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~ 236 (481)
.. .|+. +|... .-.-+..|.+.++...+.....
T Consensus 624 ~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 624 LL--RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 65 3322 22221 2234556777777777766543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00015 Score=72.53 Aligned_cols=237 Identities=10% Similarity=0.085 Sum_probs=164.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCH-HhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHH
Q 042941 102 TKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGI-EDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILN 180 (481)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 180 (481)
....+..|+..+...+++++|.++.+...+.. |+. ..|-.+...+.+.++.+.+..+ .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh----------------hhhh
Confidence 36788888888888899999999988766643 433 3333333466666665544333 2333
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChH
Q 042941 181 GWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVK 260 (481)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 260 (481)
... ...++.-+..+...|.+.+ -+...+..+..+|-+.|+.+++..+++++.+.. +-|+.+.|.+...|+.. +++
T Consensus 92 ~~~-~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 92 SFS-QNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hcc-cccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 333 4445545555555555542 244577888899999999999999999999987 66888999999999999 999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHc-
Q 042941 261 DAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKM- 339 (481)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~- 339 (481)
+|..++.+.... |...+++..+.++|.++...... +...+-.+ .+.+...
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i-------------~~ki~~~~ 217 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRI-------------ERKVLGHR 217 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHH-------------HHHHHhhh
Confidence 999999888764 67778999999999999886422 22222222 2222222
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042941 340 GCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALF 391 (481)
Q Consensus 340 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (481)
|..--..++-.+-..|-..++++++..++..+.+.... |.....-++.+|.
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 33344556777788888899999999999999986543 5556666776665
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00044 Score=59.98 Aligned_cols=199 Identities=12% Similarity=0.123 Sum_probs=106.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHH-----HHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Q 042941 178 ILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISC-----YSKARNLHKVLRLFDQMKRMGIECDRK-VYNAVIH 251 (481)
Q Consensus 178 l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~ 251 (481)
++--|. +.++..+|..+.+++.-. .|-......+..+ ........-|...|+..-..+..-|.. .-.++..
T Consensus 291 L~iYyL-~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 291 LIIYYL-NQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred heeeec-ccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 333455 677777777776655321 2222222222111 111122344555555444444332222 2234445
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhchhHHH
Q 042941 252 ALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFL-DIIRTGEEVF 330 (481)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~~~~~~~ 330 (481)
++.-..++++.+-.++.+..-=..-|...+ .+.++++..|.+.+|+++|-.+....++ |..+|..++ ++|.+.+...
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCch
Confidence 555556677777777766654333233333 3677777788888888888766554443 444554443 4556666666
Q ss_pred HHHHHHHHcCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 042941 331 GLLESMRKMGCQPTNDTYI-MLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSY 383 (481)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 383 (481)
-.|+.|.+...+.+..+.. .+..-|.+++.+--|-+.|+.+...+ |++.-|
T Consensus 446 lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD--P~pEnW 497 (557)
T KOG3785|consen 446 LAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD--PTPENW 497 (557)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC--CCcccc
Confidence 6677776665444444433 33445667777777777777776643 444444
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00013 Score=65.16 Aligned_cols=208 Identities=9% Similarity=-0.007 Sum_probs=148.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCC-ChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCH-
Q 042941 112 RYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYK-NVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSS- 189 (481)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 189 (481)
.+...+..++|+..+..+.+.+. -+..+|+.--.++...| ++++++..++++....+.+..+|+.....+. +.+..
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~-~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE-KLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH-HcCchh
Confidence 34445778899999999887542 24456666666666666 5789999998877667778788887665555 56653
Q ss_pred -HHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---CCh----HH
Q 042941 190 -REAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKG---RLV----KD 261 (481)
Q Consensus 190 -~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~----~~ 261 (481)
+++..+++.+.+...+ +..+|+....++.+.|+++++++.++++.+.+ +.+...|+.....+.+. |.. +.
T Consensus 124 ~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHH
Confidence 6788888888877554 77888888888889999999999999999986 45777887776666554 222 45
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 042941 262 AISLMKSMEEKGVAPNVVTYNSLIKPLCKA----RKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRT 325 (481)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 325 (481)
......++....+. |...|+.+...+... +...+|...+.+..+.++ .+...+..|++.|+.
T Consensus 202 el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 67777677766554 778888888777763 344567777777665432 255566666666654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.3e-05 Score=69.37 Aligned_cols=188 Identities=14% Similarity=-0.037 Sum_probs=123.3
Q ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC-HHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchH---h
Q 042941 100 LVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFA-VG-IEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTK---S 174 (481)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~ 174 (481)
..+...+..+...+...|+++.|...|+++...... |. ..++..+..++...|++++|...++.+....|.+.. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 344777888888888999999999999988765321 11 245667788888899999999999886554443333 3
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 042941 175 FNIILNGWCNII--------GSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVY 246 (481)
Q Consensus 175 ~~~l~~~~~~~~--------~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 246 (481)
+..+...+. .. |++++|.+.|+.+...... +...+..+..... ... ... ...
T Consensus 110 ~~~~g~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~--------~~~ 169 (235)
T TIGR03302 110 YYLRGLSNY-NQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA--------GKE 169 (235)
T ss_pred HHHHHHHHH-HhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH--------HHH
Confidence 444555555 33 6677888888887766322 1222222111100 000 000 011
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 247 NAVIHALAKGRLVKDAISLMKSMEEKGVA--PNVVTYNSLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 247 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
..+...+.+.|++++|...++...+.... .....+..+..++...|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 24556788899999999999998876321 23467888889999999999999998888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.5e-05 Score=67.56 Aligned_cols=190 Identities=12% Similarity=-0.011 Sum_probs=129.7
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC-H
Q 042941 62 AHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPS-LVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFA-VG-I 138 (481)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~ 138 (481)
......+-.....+...|+++.|...|+++... .|+ +....++..+...+...|++++|+..++.+.+.... |. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 346778888888999999999999999998875 222 122357778888999999999999999999875422 11 1
Q ss_pred HhHHHHHHHHHcC--------CChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHh
Q 042941 139 EDFQGLLSALCRY--------KNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVS 210 (481)
Q Consensus 139 ~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 210 (481)
.++..+..++... |+.+.|.+.|+.+....|.+...+..+..... ... .. . ..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~-----~~~------~~-------~-~~ 168 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY-----LRN------RL-------A-GK 168 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH-----HHH------HH-------H-HH
Confidence 2344455555544 67888888888865544444333332221111 000 00 0 01
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 211 FSCIISCYSKARNLHKVLRLFDQMKRMGI--ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 211 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
...+...+.+.|++.+|...++...+... +.....+..+..++...|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12455678889999999999999887531 223567888999999999999999998888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=8e-06 Score=74.93 Aligned_cols=223 Identities=14% Similarity=0.043 Sum_probs=153.3
Q ss_pred HHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCC
Q 042941 73 AILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYK 152 (481)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 152 (481)
.-+.+.|++.+|.-.|+..... ||....+|..|....+..++-..|+..+++..+.+ +-+......|.-.|...|
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkq----dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQ----DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhh----ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhh
Confidence 3456788888888888888877 66668888888888888888888888888888754 225566777777888888
Q ss_pred ChhhHHHHHhhc-cCCCC--------CchHhHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCcccHHhHHHHHHHHHhcC
Q 042941 153 NVQDAEHLMFCN-KDVFP--------FNTKSFNIILNGWCNIIGSSREAERVWMEMSQ-RGICYDVVSFSCIISCYSKAR 222 (481)
Q Consensus 153 ~~~~a~~~~~~~-~~~~~--------~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~ll~~~~~~~ 222 (481)
.-..|+..++.- ....+ ++...-+. ..+. ....+....++|-++.. .+..+|......|.-.|.-.|
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~-~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFL-DSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCC-CHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 888888888652 21100 00000000 1122 22333444555554443 444467777777777788888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 042941 223 NLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFD 302 (481)
Q Consensus 223 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 302 (481)
++++|...|+..+... +-|...||-|...++...+.++|+..|++.++..+. =++....|.-+|...|.+++|...|-
T Consensus 445 efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 8999999998888764 456778888888888888889999999888886443 23344445667788888888888776
Q ss_pred HHH
Q 042941 303 EML 305 (481)
Q Consensus 303 ~m~ 305 (481)
..+
T Consensus 523 ~AL 525 (579)
T KOG1125|consen 523 EAL 525 (579)
T ss_pred HHH
Confidence 543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.4e-05 Score=71.13 Aligned_cols=214 Identities=12% Similarity=0.091 Sum_probs=119.6
Q ss_pred HHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhc
Q 042941 142 QGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKA 221 (481)
Q Consensus 142 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 221 (481)
..+...+...|-...|..+|+++ ..|.-++.+|+ ..|+..+|..+..+..+. +||+..|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erl--------emw~~vi~CY~-~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL--------EMWDPVILCYL-LLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHH-HhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 34555666666666666666532 34555566666 666666666666555553 45666666666655555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 042941 222 RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAF 301 (481)
Q Consensus 222 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 301 (481)
.-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+.- -..+|-..-.+..+.+++..|...|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHH
Confidence 5566666665543322 1111111222356666666666655544321 3445555555555566666666555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 042941 302 DEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRS 381 (481)
Q Consensus 302 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 381 (481)
..-..- . +-+...||.+-.+|.+.++-.+|...+.+..+.+ .-+..
T Consensus 543 ~rcvtL--~-------------------------------Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~ 588 (777)
T KOG1128|consen 543 HRCVTL--E-------------------------------PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQ 588 (777)
T ss_pred HHHhhc--C-------------------------------CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCe
Confidence 554432 1 2234566667777777777777777777666655 33455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 382 SYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
+|...+-....-|.+++|++.+.++.+
T Consensus 589 iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 589 IWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred eeechhhhhhhcccHHHHHHHHHHHHH
Confidence 566666666667777777777666554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.5e-05 Score=63.92 Aligned_cols=157 Identities=11% Similarity=0.043 Sum_probs=73.5
Q ss_pred HHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 042941 69 HTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSAL 148 (481)
Q Consensus 69 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 148 (481)
...-..+.-.|+-+....+....... ++.+....+..+...++.|++..|+..+++..... ++|..+|+.+.-+|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~----~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaal 144 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA----YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAAL 144 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc----CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHH
Confidence 33334444444444444444443222 11123344445555555555555555555555433 34555555555555
Q ss_pred HcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHH
Q 042941 149 CRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVL 228 (481)
Q Consensus 149 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 228 (481)
.+.|+++.|..-|.+.....+-+....|-+...+. -.|+.+.|..++......+.. |...-..+..+....|++++|.
T Consensus 145 dq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~-L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 145 DQLGRFDEARRAYRQALELAPNEPSIANNLGMSLL-LRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred HHccChhHHHHHHHHHHHhccCCchhhhhHHHHHH-HcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHH
Confidence 55555555555554443333344444444444444 455555555555554444222 3333344444445555555555
Q ss_pred HHHH
Q 042941 229 RLFD 232 (481)
Q Consensus 229 ~~~~ 232 (481)
++..
T Consensus 223 ~i~~ 226 (257)
T COG5010 223 DIAV 226 (257)
T ss_pred hhcc
Confidence 5443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00049 Score=65.46 Aligned_cols=170 Identities=16% Similarity=0.132 Sum_probs=103.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCC
Q 042941 109 LIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGS 188 (481)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 188 (481)
.+.+......|.+|+.+++.+.... .-..-|..+.+-|...|+++.|+++|.+ ...++..|.+|. +.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e--------~~~~~dai~my~-k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTE--------ADLFKDAIDMYG-KAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHh--------cchhHHHHHHHh-cccc
Confidence 3444555667777777777766532 2233466677888888888888888843 234667778888 8888
Q ss_pred HHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 042941 189 SREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKS 268 (481)
Q Consensus 189 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 268 (481)
|+.|.++-.+.. |....+..|-+-..-+-..|++.+|.++|-.+. .|+. .|.+|-+.|..+...++.++
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 888887765543 334455566665666667777777777664432 3332 45666666766666665554
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 042941 269 MEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDE 303 (481)
Q Consensus 269 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 303 (481)
-.-. .-..|...+..-|-..|+...|...|-+
T Consensus 876 ~h~d---~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 876 HHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred hChh---hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 3211 1122333444455555666666655543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2e-05 Score=72.37 Aligned_cols=245 Identities=10% Similarity=0.043 Sum_probs=175.8
Q ss_pred cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHH
Q 042941 43 NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRA 122 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a 122 (481)
++.-.|.-.|+..+.+.+ -+..+|-.|.......++-..|+..+++..+. |+.+..+...|.-.|...|.-..|
T Consensus 299 G~L~~A~LafEAAVkqdP--~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L----dP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQDP--QHAEAWQKLGITQAENENEQNAISALRRCLEL----DPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred CCchHHHHHHHHHHhhCh--HHHHHHHHhhhHhhhccchHHHHHHHHHHHhc----CCccHHHHHHHHHHHhhhhhHHHH
Confidence 456677777887775552 47899999999999999999999999999987 666788999999999999999999
Q ss_pred HHHHHHHhhcCCCCCHHh--------HHHHHHHHHcCCChhhHHHHHhhccC--CCCCchHhHHHHHHHHHHhcCCHHHH
Q 042941 123 INAFYAYKRFKFAVGIED--------FQGLLSALCRYKNVQDAEHLMFCNKD--VFPFNTKSFNIILNGWCNIIGSSREA 192 (481)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~--------~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a 192 (481)
+..++.......+ -... +.. -..+.....+....++|-.+.. +...|+.+...|.-.|. -.|++++|
T Consensus 373 l~~L~~Wi~~~p~-y~~l~~a~~~~~~~~-~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~-ls~efdra 449 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-YVHLVSAGENEDFEN-TKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN-LSGEFDRA 449 (579)
T ss_pred HHHHHHHHHhCcc-chhccccCccccccC-CcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh-cchHHHHH
Confidence 9999888654311 0000 000 0011112223344455544322 22367778888887787 89999999
Q ss_pred HHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 042941 193 ERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECD-RKVYNAVIHALAKGRLVKDAISLMKSMEE 271 (481)
Q Consensus 193 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (481)
.+.|+......+. |...||-|...++...+.++|+..|++.++. .|+ +.+.-.|.-+|...|.+++|.+.|-....
T Consensus 450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999887444 7789999999999999999999999999986 444 34555577789999999999999876653
Q ss_pred c---------CCCCChhhHHHHHHHHHhcCCHHHHHH
Q 042941 272 K---------GVAPNVVTYNSLIKPLCKARKLDEARQ 299 (481)
Q Consensus 272 ~---------~~~~~~~~~~~li~~~~~~g~~~~a~~ 299 (481)
. +..++...|..|=.++.-.++.+.+..
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 2 111233456666555655666554433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00033 Score=57.92 Aligned_cols=188 Identities=11% Similarity=0.077 Sum_probs=132.9
Q ss_pred CCHHHHHHHHHHHhh---cC-CCCCHHh-HHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHH
Q 042941 117 HDVGRAINAFYAYKR---FK-FAVGIED-FQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSRE 191 (481)
Q Consensus 117 ~~~~~a~~~~~~~~~---~~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 191 (481)
.+.++..+++..+.. .| ..++..+ |..++-+....|+.+.|..+++.+...+|.+..+ ..+=..+....|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV-~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRV-GKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhH-HHHHHHHHHHhhchhh
Confidence 456777777666652 33 4556543 5667788888899999999998887777433333 2222233326799999
Q ss_pred HHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 042941 192 AERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEE 271 (481)
Q Consensus 192 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (481)
|+++|+.+.+..+. |..++---+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 99999999887633 6666666666666678877888888888776 567999999999999999999999999999987
Q ss_pred cCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCC
Q 042941 272 KGVAPNVVTYNSLIKPLCKA---RKLDEARQAFDEMLQRG 308 (481)
Q Consensus 272 ~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~ 308 (481)
..+. +...+..+...+.-. .+.+-+.++|.+..+..
T Consensus 183 ~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 5322 344444455444433 35677888888877753
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00022 Score=67.71 Aligned_cols=160 Identities=13% Similarity=0.069 Sum_probs=87.2
Q ss_pred cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHH
Q 042941 43 NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRA 122 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a 122 (481)
+.+..|+.+++.+..+. .-..-|..+..-|+..|+++.|.++|-+. ..++..|..|.+.|+|+.|
T Consensus 746 kew~kai~ildniqdqk---~~s~yy~~iadhyan~~dfe~ae~lf~e~------------~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQK---TASGYYGEIADHYANKGDFEIAEELFTEA------------DLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred hhhhhhHhHHHHhhhhc---cccccchHHHHHhccchhHHHHHHHHHhc------------chhHHHHHHHhccccHHHH
Confidence 45666666666664332 22334666667777777777777777543 2344566677777777777
Q ss_pred HHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 042941 123 INAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR 202 (481)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 202 (481)
.++-++... .......|..-..-+-+.|++.+|++++-.+.. |+ ..|.+|- +.|..+..+++..+-...
T Consensus 811 ~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~---p~-----~aiqmyd-k~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 811 FKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE---PD-----KAIQMYD-KHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC---ch-----HHHHHHH-hhCcchHHHHHHHHhChh
Confidence 776655432 233344455555555666777777666643321 22 2345555 666666666655443211
Q ss_pred CCcccHHhHHHHHHHHHhcCCHHHHHHHH
Q 042941 203 GICYDVVSFSCIISCYSKARNLHKVLRLF 231 (481)
Q Consensus 203 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 231 (481)
. -..|...+..-+-..|+...|..-|
T Consensus 880 ~---l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 880 H---LHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred h---hhHHHHHHHHHHHhccChhHHHHHH
Confidence 1 1123333444445555555555444
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00011 Score=61.09 Aligned_cols=159 Identities=12% Similarity=0.136 Sum_probs=109.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 042941 215 ISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKL 294 (481)
Q Consensus 215 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 294 (481)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+.++. +...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 3457777877776544422211 11 0122356677777778877776554 788888888888899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCC--hhHHHHHHHHH
Q 042941 295 DEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKK-FSRWRQ--FGNVFKVWNEI 371 (481)
Q Consensus 295 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~--~~~a~~~~~~~ 371 (481)
++|...|++..+.. +.+...+..+..+ +...|+ .++|.+++++.
T Consensus 90 ~~A~~a~~~Al~l~---------------------------------P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~a 136 (198)
T PRK10370 90 DNALLAYRQALQLR---------------------------------GENAELYAALATVLYYQAGQHMTPQTREMIDKA 136 (198)
T ss_pred HHHHHHHHHHHHhC---------------------------------CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 99999988887753 2345566666665 356666 48899999888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 042941 372 SENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELL 421 (481)
Q Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 421 (481)
.+.+.. +...+..+...+.+.|++++|+..|+++.+. ..|+...+.++
T Consensus 137 l~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~~~i 184 (198)
T PRK10370 137 LALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNRTQLV 184 (198)
T ss_pred HHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHHHHH
Confidence 886543 6677888888888999999999999988875 34555444443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.0012 Score=69.49 Aligned_cols=325 Identities=11% Similarity=0.009 Sum_probs=180.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCC-------CCch--HhHHHHHHHH
Q 042941 112 RYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVF-------PFNT--KSFNIILNGW 182 (481)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~--~~~~~l~~~~ 182 (481)
.....|+++.+..++..+.......++.........+...|+++++..++....... ++.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 344567777777776655321111222233344555667789999988887642211 1111 1122223344
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCccc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHH
Q 042941 183 CNIIGSSREAERVWMEMSQRGICYD----VVSFSCIISCYSKARNLHKVLRLFDQMKRMGI---ECD--RKVYNAVIHAL 253 (481)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~li~~~ 253 (481)
. ..|++++|...++.....-...+ ....+.+...+...|++++|...+.+.....- .+. ..++..+...+
T Consensus 463 ~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 463 I-NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred H-hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 5 78999999999998765311112 13445566677889999999999988764311 111 23445566778
Q ss_pred HcCCChHHHHHHHHHHHHc----CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCH--HHHHHHHHH
Q 042941 254 AKGRLVKDAISLMKSMEEK----GVA--P-NVVTYNSLIKPLCKARKLDEARQAFDEMLQRG--ISPTI--RTYHAFLDI 322 (481)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~--~~~~~li~~ 322 (481)
...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+.. ..+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999998876542 221 1 12234445556677899999999998865431 11222 112222222
Q ss_pred Hhch---hHHHHHHHHHHHc----CCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHH
Q 042941 323 IRTG---EEVFGLLESMRKM----GCQPTNDT--YIMLIKKFSRWRQFGNVFKVWNEISENGNGPD---RSSYTALIHAL 390 (481)
Q Consensus 323 ~~~~---~~~~~~~~~~~~~----~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 390 (481)
.... ..+...+...... +....... ....+..+...|+.+.|...+........... ...+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 2222 3334444444321 11111101 11122445568899999999877654221111 11234567788
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCCCCH-hHHHHHHHHHhhhhHHHHHHHH
Q 042941 391 FLNGKLEEAHQYYMEMKEK----QLLPEP-KTDELLQDWSYNKQFVERQIAS 437 (481)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~~~~~~~~~~ 437 (481)
...|++++|...+.+.... |..++. .+...+...+...|..+++.+.
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~ 753 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRV 753 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8999999999999987654 332222 2233333444555555444433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.2e-05 Score=63.46 Aligned_cols=160 Identities=13% Similarity=0.060 Sum_probs=117.7
Q ss_pred HHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhc
Q 042941 142 QGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKA 221 (481)
Q Consensus 142 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 221 (481)
..+-..+.-.|+-+....+........+.|....+..+.... +.|++..|...+++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~-~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQI-RNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHH-HhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 445566666777777777776655555566667777777777 8888888888888877653 34778888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 042941 222 RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAF 301 (481)
Q Consensus 222 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 301 (481)
|++++|..-|.+..+.. .-+...++.+.-.+.-.|+.+.|..++......+.. |...-..+.......|+++.|..+-
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 88888888888877763 345667777888888888888888888888776544 5666666777777788888888776
Q ss_pred HHHH
Q 042941 302 DEML 305 (481)
Q Consensus 302 ~~m~ 305 (481)
.+-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 6543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.8e-05 Score=73.47 Aligned_cols=223 Identities=9% Similarity=-0.002 Sum_probs=171.8
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHh
Q 042941 61 YAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIED 140 (481)
Q Consensus 61 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 140 (481)
++|--..-..+...+...|-...|..+|+++. .|..+|..|+..|+.++|..+.....+ -+|++..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle------------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~l 459 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE------------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRL 459 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH------------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchh
Confidence 33333444556777888999999999998753 566788899999999999999888776 3688999
Q ss_pred HHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHh
Q 042941 141 FQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSK 220 (481)
Q Consensus 141 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 220 (481)
|..+.+.....--+++|.++++....+ .-..+..... ..++++++.+.|+.-...+. .-..+|-.+.-+..+
T Consensus 460 yc~LGDv~~d~s~yEkawElsn~~sar------A~r~~~~~~~-~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALq 531 (777)
T KOG1128|consen 460 YCLLGDVLHDPSLYEKAWELSNYISAR------AQRSLALLIL-SNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQ 531 (777)
T ss_pred HHHhhhhccChHHHHHHHHHhhhhhHH------HHHhhccccc-cchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHH
Confidence 999999888888889999988764332 1112222233 57899999999987666532 255678888888889
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 042941 221 ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQA 300 (481)
Q Consensus 221 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 300 (481)
.+++..|.+.|....... +-+...||.+-.+|.+.++-.+|...+.+..+.+.. +-..|-.-+....+.|.+++|.+.
T Consensus 532 lek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 532 LEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred HhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHH
Confidence 999999999998887753 445678999999999999999999999999988743 556666667777899999999999
Q ss_pred HHHHHHC
Q 042941 301 FDEMLQR 307 (481)
Q Consensus 301 ~~~m~~~ 307 (481)
+.++...
T Consensus 610 ~~rll~~ 616 (777)
T KOG1128|consen 610 YHRLLDL 616 (777)
T ss_pred HHHHHHh
Confidence 9987543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.6e-05 Score=61.94 Aligned_cols=118 Identities=8% Similarity=0.018 Sum_probs=64.5
Q ss_pred CChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHH-HhcCC--HHHHH
Q 042941 152 KNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCY-SKARN--LHKVL 228 (481)
Q Consensus 152 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~-~~~~~--~~~a~ 228 (481)
++.+++...+.......|.+...|..+...|. ..|++++|...|+........ +...+..+..++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~-~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYL-WRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 34444444444433334555566666666666 566666666666665555332 444444444442 44444 36666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 229 RLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
+++++..+.+ +-+..++..+...+...|++++|...|+++.+.
T Consensus 131 ~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666553 335555555666666666666666666666554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0016 Score=59.79 Aligned_cols=363 Identities=13% Similarity=0.050 Sum_probs=184.8
Q ss_pred HHhcCCCC-CHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCC
Q 042941 22 IEECGIKV-SSELVSEVLSWV--RNDWEAAFTFFLWAGKQSGYAHS-TREYHTMIAILGKVRKFDTAWALIDEMRGGETG 97 (481)
Q Consensus 22 ~~~~~~~~-~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 97 (481)
...-.+.| +...|..-..++ .+++++|++--..- ..+.|+ ...|+....++.-.|++++|+.-|.+=++.
T Consensus 26 t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~---~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~--- 99 (539)
T KOG0548|consen 26 TEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKT---RRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEK--- 99 (539)
T ss_pred HHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHH---HhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhc---
Confidence 33344444 334444433333 25566665544433 334465 678999999999999999999999987776
Q ss_pred CCcccHHHHHHHHHHHHhcCCHHHHH---HHHHHHhhc---CCCCCHHhHHHHHHHHH----------cCCChhhHHHHH
Q 042941 98 PSLVTKQTLLILIRRYCAVHDVGRAI---NAFYAYKRF---KFAVGIEDFQGLLSALC----------RYKNVQDAEHLM 161 (481)
Q Consensus 98 p~~~~~~~~~~li~~~~~~~~~~~a~---~~~~~~~~~---~~~~~~~~~~~ll~~~~----------~~~~~~~a~~~~ 161 (481)
++.+...+.-+..++.......... .++..+... .......+|..++..+- .-..+..+.-.+
T Consensus 100 -d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l 178 (539)
T KOG0548|consen 100 -DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQL 178 (539)
T ss_pred -CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHH
Confidence 6666777777777762221110000 011111100 00001112222322221 111111222111
Q ss_pred hhc-------------cCCCCC------------c----------hHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc
Q 042941 162 FCN-------------KDVFPF------------N----------TKSFNIILNGWCNIIGSSREAERVWMEMSQRGICY 206 (481)
Q Consensus 162 ~~~-------------~~~~~~------------~----------~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~ 206 (481)
... .....| | ..-...+.++.. +..++..|++-+....... .
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaay-kkk~f~~a~q~y~~a~el~--~ 255 (539)
T KOG0548|consen 179 KGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAY-KKKDFETAIQHYAKALELA--T 255 (539)
T ss_pred hcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHH-HhhhHHHHHHHHHHHHhHh--h
Confidence 100 001111 0 012345666666 7888999999998887764 3
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHcCCChHHHHHHHHHHHHcCCCCChh
Q 042941 207 DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNA-------VIHALAKGRLVKDAISLMKSMEEKGVAPNVV 279 (481)
Q Consensus 207 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (481)
++.-++....+|...|.+......-....+.|-. ...-|+. +..+|.+.++++.+...|.+.......|+..
T Consensus 256 ~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l 334 (539)
T KOG0548|consen 256 DITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL 334 (539)
T ss_pred hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH
Confidence 5555667777888999888888777776665521 2233333 3345666778899999998876654444322
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhch---hHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042941 280 TYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIR--TYHAFLDIIRTG---EEVFGLLESMRKMGCQPTNDTYIMLIKK 354 (481)
Q Consensus 280 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 354 (481)
+ +....+++........-.+ |... .... -..+.+. ..+...+.++++.. +-|...|....-+
T Consensus 335 s---------~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~k-Gne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac 401 (539)
T KOG0548|consen 335 S---------KLKEAEKALKEAERKAYIN--PEKAEEEREK-GNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAAC 401 (539)
T ss_pred H---------HHHHHHHHHHHHHHHHhhC--hhHHHHHHHH-HHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHH
Confidence 2 1122233333322222111 1110 0000 0011111 22233344444333 4455666666667
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 355 FSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 355 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
|.+.|.+..|+.=.+...+... +....|.-=..++....++++|.+.|.+..+.
T Consensus 402 ~~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777777666666555421 12333444444455555666677666666553
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.9e-05 Score=74.30 Aligned_cols=283 Identities=10% Similarity=0.105 Sum_probs=157.3
Q ss_pred HHHHHHHHH--HHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccC---------C-CCC
Q 042941 103 KQTLLILIR--RYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKD---------V-FPF 170 (481)
Q Consensus 103 ~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------~-~~~ 170 (481)
..|-..++. .|...|+.+.|.+-++-+. +...|..+.++|.+..+++-|.-.+-.|.. . ..+
T Consensus 726 ~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 726 ESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred HHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 444445543 4566788888877776554 345678888888888887777666644321 0 111
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042941 171 NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVI 250 (481)
Q Consensus 171 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 250 (481)
+ .. ..-...++...|-+++|+.+|++-++. ..|=+.|-..|.+++|.++-+.-.+..+ ..||-...
T Consensus 800 ~-e~-eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA 865 (1416)
T KOG3617|consen 800 E-ED-EAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYA 865 (1416)
T ss_pred c-ch-hhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHH
Confidence 1 11 111112222678888888888877653 3344456678888888887665333222 34566666
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhchhHH
Q 042941 251 HALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRT-YHAFLDIIRTGEEV 329 (481)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~~~~ 329 (481)
.-+-..++.+.|++.|++.... --..+..|. .++.....+.+.+.+ |.... |...+. ..|+.
T Consensus 866 ~~Lear~Di~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~~d----~~L~~WWgqYlE---S~Gem 928 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRKRD----ESLYSWWGQYLE---SVGEM 928 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhccc----hHHHHHHHHHHh---cccch
Confidence 6666777888888877754221 111111110 112222222222211 11111 111111 11222
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 330 FGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
...+..... ..-|-++++..|-+|+.++|-++-++-- |......+.+.|-..|++.+|..+|.+.+
T Consensus 929 daAl~~Y~~------A~D~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq-- 994 (1416)
T KOG3617|consen 929 DAALSFYSS------AKDYFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ-- 994 (1416)
T ss_pred HHHHHHHHH------hhhhhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH--
Confidence 111111111 1234567777888899999988866532 55555568889999999999999998875
Q ss_pred CCCCCHhHHHHHHHHHhhhhHHHHHHHHHhhcCc
Q 042941 410 QLLPEPKTDELLQDWSYNKQFVERQIASLKAHQP 443 (481)
Q Consensus 410 ~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 443 (481)
++...++.+...+..++......-..|
T Consensus 995 -------afsnAIRlcKEnd~~d~L~nlal~s~~ 1021 (1416)
T KOG3617|consen 995 -------AFSNAIRLCKENDMKDRLANLALMSGG 1021 (1416)
T ss_pred -------HHHHHHHHHHhcCHHHHHHHHHhhcCc
Confidence 455566666666666666655554444
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.003 Score=62.42 Aligned_cols=182 Identities=10% Similarity=0.012 Sum_probs=129.0
Q ss_pred ChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHH
Q 042941 80 KFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEH 159 (481)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 159 (481)
+...|...|-+..+. |+.=...|..|...|+..-+...|...|+...+.+ .-+......+.+.|++..+++.|..
T Consensus 473 ~~~~al~ali~alrl----d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 473 NSALALHALIRALRL----DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred hHHHHHHHHHHHHhc----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHH
Confidence 356666666665554 33336788888888888888999999999988765 3366778888999999999999988
Q ss_pred HHhhccCCCCCch--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042941 160 LMFCNKDVFPFNT--KSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM 237 (481)
Q Consensus 160 ~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 237 (481)
+.-...+..+... ..|-...-.|. +.++...+..-|+...+..++ |...|..+..+|..+|.+..|.++|.+....
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyL-ea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYL-EAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhcccccc-CccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 8544322222122 22333344466 788888888888887776544 7778889999999999999999999888765
Q ss_pred CCCCCHHHHHH--HHHHHHcCCChHHHHHHHHHHHH
Q 042941 238 GIECDRKVYNA--VIHALAKGRLVKDAISLMKSMEE 271 (481)
Q Consensus 238 ~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~~~~ 271 (481)
.|+ .+|.. ....-+..|.+.+|+..+.....
T Consensus 626 --rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 626 --RPL-SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred --CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 343 23332 22335678889999888887654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0018 Score=59.53 Aligned_cols=374 Identities=9% Similarity=0.069 Sum_probs=218.9
Q ss_pred CCCHHHHHHHHHHhh-cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHH
Q 042941 28 KVSSELVSEVLSWVR-NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTL 106 (481)
Q Consensus 28 ~~~~~~~~~~l~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~ 106 (481)
+-+...+..++.... +..+++...++.+.... +-+...|..-|..-.+..+++..+.+|.+.+..-. + .+.|
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~F--P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--n---lDLW 89 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNVF--PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--N---LDLW 89 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--h---HhHH
Confidence 347778888888884 45688888999886554 34678899999999999999999999999877522 2 5566
Q ss_pred HHHHHHHHhc-CCHH----HHHHHHHHHh-hcCCCC-CHHhHHHHHHHH---------HcCCChhhHHHHHhhccCC-CC
Q 042941 107 LILIRRYCAV-HDVG----RAINAFYAYK-RFKFAV-GIEDFQGLLSAL---------CRYKNVQDAEHLMFCNKDV-FP 169 (481)
Q Consensus 107 ~~li~~~~~~-~~~~----~a~~~~~~~~-~~~~~~-~~~~~~~ll~~~---------~~~~~~~~a~~~~~~~~~~-~~ 169 (481)
..-+..-.+. |+.. .-.+.|+-.. +.|..+ +-..|+..+..+ ....+++...+++.++... +.
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~ 169 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH 169 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc
Confidence 6555433332 2222 2233344333 445443 234566555443 2333556667777764321 11
Q ss_pred CchHhHHHH------HHH-----H-HHhcCCHHHHHHHHHHHHhc--CCcccHHh---------------HHHHHHH---
Q 042941 170 FNTKSFNII------LNG-----W-CNIIGSSREAERVWMEMSQR--GICYDVVS---------------FSCIISC--- 217 (481)
Q Consensus 170 ~~~~~~~~l------~~~-----~-~~~~~~~~~a~~~~~~~~~~--g~~~~~~~---------------~~~ll~~--- 217 (481)
.-...|+.. |+- + ..+...+..|.++++++... |+.....+ |-.+|.-
T Consensus 170 nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEks 249 (656)
T KOG1914|consen 170 NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKS 249 (656)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhc
Confidence 111122211 110 0 11334556666766665432 22111111 2111111
Q ss_pred ----------------------------------------------HHhcCC-------HHHHHHHHHHHHHcCCCCCHH
Q 042941 218 ----------------------------------------------YSKARN-------LHKVLRLFDQMKRMGIECDRK 244 (481)
Q Consensus 218 ----------------------------------------------~~~~~~-------~~~a~~~~~~~~~~~~~~~~~ 244 (481)
+...|+ -+++..+++.....-..-+..
T Consensus 250 NpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~ 329 (656)
T KOG1914|consen 250 NPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKL 329 (656)
T ss_pred CCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 000111 122222222222211111222
Q ss_pred HHHHHHHHHHcC---CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 042941 245 VYNAVIHALAKG---RLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISP-TIRTYHAFL 320 (481)
Q Consensus 245 ~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li 320 (481)
+|..+...--.. ...+....+++++...-..--.-+|...++.-.+...++.|..+|.+..+.+..+ ++...++++
T Consensus 330 Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~m 409 (656)
T KOG1914|consen 330 LYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALM 409 (656)
T ss_pred HHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHH
Confidence 222222111111 1245555666666544222234567788888888889999999999999988777 788899999
Q ss_pred HHHhchhHH--HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCH
Q 042941 321 DIIRTGEEV--FGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDR--SSYTALIHALFLNGKL 396 (481)
Q Consensus 321 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~ 396 (481)
.-+|..+.. .++|+.=.+. ...++.--...+.-+...++-..+..+|++....++.|+. .+|..++.-=..-|+.
T Consensus 410 Ey~cskD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 410 EYYCSKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHHhcCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 998887654 6777654332 1223334456777788889999999999999988666554 5899999988999999
Q ss_pred HHHHHHHHHHHHC
Q 042941 397 EEAHQYYMEMKEK 409 (481)
Q Consensus 397 ~~A~~~~~~m~~~ 409 (481)
..+.++-+++...
T Consensus 489 ~si~~lekR~~~a 501 (656)
T KOG1914|consen 489 NSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998887654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.1e-05 Score=60.72 Aligned_cols=91 Identities=10% Similarity=-0.081 Sum_probs=40.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCC
Q 042941 109 LIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGS 188 (481)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 188 (481)
....+...|++++|...|+...... +.+...+..+..++...|++++|...|.+.....|.+...+..+..++. ..|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~-~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK-MMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HcCC
Confidence 3344444444444444444444432 1233444444444444444444444444433333344444444444444 4444
Q ss_pred HHHHHHHHHHHHh
Q 042941 189 SREAERVWMEMSQ 201 (481)
Q Consensus 189 ~~~a~~~~~~~~~ 201 (481)
+++|...|+....
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00067 Score=56.58 Aligned_cols=162 Identities=17% Similarity=0.149 Sum_probs=101.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhch
Q 042941 247 NAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTG 326 (481)
Q Consensus 247 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 326 (481)
..-...|+..|++++|++...... +......=+..+.+..+++-|...+++|.+-. +..|.+.|.+
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~----- 177 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQ----- 177 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHH-----
Confidence 333445667777777776665521 22333333445556666777777777766531 2222222221
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 327 EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEM 406 (481)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (481)
+.+......+++..|.-+|++|.+. ..|++.+.+....++...|++++|..++++.
T Consensus 178 -----------------------awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 178 -----------------------AWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred -----------------------HHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 2233334456789999999999874 5689999999999999999999999999999
Q ss_pred HHCCCCCCHhHHHHHHHHHhhhhH---HHHHHHHHhhcCccCC
Q 042941 407 KEKQLLPEPKTDELLQDWSYNKQF---VERQIASLKAHQPQSG 446 (481)
Q Consensus 407 ~~~~~~p~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~ 446 (481)
.++.......-.|.+...+..... .++.+..++..+|..+
T Consensus 234 L~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 234 LDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 987544333333444444433333 5577777777777654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.1e-05 Score=59.46 Aligned_cols=95 Identities=9% Similarity=-0.068 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 042941 211 FSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCK 290 (481)
Q Consensus 211 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 290 (481)
+......+...|++++|...|+...... +.+...+..+..++...|++++|...|+......+. +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 4445666677777777777777777664 446667777777777777777777777777776443 66667777777777
Q ss_pred cCCHHHHHHHHHHHHHC
Q 042941 291 ARKLDEARQAFDEMLQR 307 (481)
Q Consensus 291 ~g~~~~a~~~~~~m~~~ 307 (481)
.|++++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777777664
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0008 Score=61.14 Aligned_cols=138 Identities=12% Similarity=-0.013 Sum_probs=77.3
Q ss_pred HHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc-HHhHHHHHHHHHhcCCHHH
Q 042941 148 LCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYD-VVSFSCIISCYSKARNLHK 226 (481)
Q Consensus 148 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~~~~~~ 226 (481)
+...|+++.|+..+..+....|.|+.........+. +.++.++|.+.++.+... .|+ ....-.+..++.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~-~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILL-EANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 334456666666666655545555555555555555 666666666666666554 333 2233344556666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 227 VLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 227 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 306 (481)
|..+++...... +-|+..|..|..+|...|+..++..-..+ +|...|+++.|...+....+
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHH
Confidence 666666655543 45566666666666666665555443332 23445666666666665554
Q ss_pred C
Q 042941 307 R 307 (481)
Q Consensus 307 ~ 307 (481)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 4
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00051 Score=68.01 Aligned_cols=146 Identities=9% Similarity=-0.005 Sum_probs=103.7
Q ss_pred CCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHH
Q 042941 134 FAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSC 213 (481)
Q Consensus 134 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 213 (481)
...++..+-.|.....+.|.+++|..+++.+....|.+......+...+. +.+++++|+..+++....... +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~-~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVK-RQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 34457777777788888888888888887776666666666677777777 788888888888887776443 4555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHH
Q 042941 214 IISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNS 283 (481)
Q Consensus 214 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 283 (481)
+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+.- .|....|+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~ 227 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTR 227 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHH
Confidence 6777778888888888888887743 3456777777788888888888888888776652 233444443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.6e-06 Score=49.17 Aligned_cols=33 Identities=36% Similarity=0.664 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 042941 382 SYTALIHALFLNGKLEEAHQYYMEMKEKQLLPE 414 (481)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 414 (481)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0056 Score=60.78 Aligned_cols=322 Identities=13% Similarity=0.098 Sum_probs=198.3
Q ss_pred HHHHhcCCChhHHHHHHHhcCC--CCCHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCC-CCCCHHHHHHHHHHHhccCC
Q 042941 6 DILREFSHKRSEMRNKIEECGI--KVSSELVSEVLSWV--RNDWEAAFTFFLWAGKQSG-YAHSTREYHTMIAILGKVRK 80 (481)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~ 80 (481)
.+|.+...-.+++..+..+-++ .-+|+.++-...++ ..-+.+-+++++.+.-+.+ +.-+...-|.+|-.-.+..
T Consensus 957 ~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad- 1035 (1666)
T KOG0985|consen 957 KVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKAD- 1035 (1666)
T ss_pred HHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcC-
Confidence 5666666666777777765443 23566666666665 3566777888888874433 3334444444444333332
Q ss_pred hhHHHHHHHHHhcCCCCCCcc----c-----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHH
Q 042941 81 FDTAWALIDEMRGGETGPSLV----T-----------------KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIE 139 (481)
Q Consensus 81 ~~~a~~~~~~~~~~~~~p~~~----~-----------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 139 (481)
.....+..+++..-. .|+.. + ..+...||.- -++.+.|.+.-++. -.+.
T Consensus 1036 ~trVm~YI~rLdnyD-a~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~---i~~ldRA~efAe~~------n~p~ 1105 (1666)
T KOG0985|consen 1036 RTRVMEYINRLDNYD-APDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIEN---IGSLDRAYEFAERC------NEPA 1105 (1666)
T ss_pred hHHHHHHHHHhccCC-chhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHH---hhhHHHHHHHHHhh------CChH
Confidence 233444444443220 11100 0 2222222221 13333333333221 2456
Q ss_pred hHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHH
Q 042941 140 DFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYS 219 (481)
Q Consensus 140 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~ 219 (481)
.|..+..+-.+.|.+.+|++-|-+. .|+..|.-++.... +.|.+++-.+.+....+..-.|... +.|+-+|+
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~-~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyA 1177 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVAS-RTGKYEDLVKYLLMARKKVREPYID--SELIFAYA 1177 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHH-hcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHH
Confidence 7888888888999999888877543 36778999999988 9999999999998777776556554 56888999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 042941 220 KARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQ 299 (481)
Q Consensus 220 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 299 (481)
+.++..+..+++. -|+......+.+-|...|.++.|.-+|.. +..|..|...++..|++..|.+
T Consensus 1178 kt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1178 KTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHH
Confidence 9999887766653 47888888888999999999988877754 4457778888888888888876
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 042941 300 AFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNE 370 (481)
Q Consensus 300 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 370 (481)
.-++. .+..+|.-+--+|...++.. +.+|...++-....-..-++..|-..|.+++.+.+++.
T Consensus 1242 ~aRKA------ns~ktWK~VcfaCvd~~EFr--lAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1242 AARKA------NSTKTWKEVCFACVDKEEFR--LAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred Hhhhc------cchhHHHHHHHHHhchhhhh--HHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 65543 35567777666666554431 11222222223334445555556666666655555543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0029 Score=61.29 Aligned_cols=321 Identities=10% Similarity=0.078 Sum_probs=184.0
Q ss_pred CHHHHHHHHHHh----hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCC---------C
Q 042941 30 SSELVSEVLSWV----RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGE---------T 96 (481)
Q Consensus 30 ~~~~~~~~l~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------~ 96 (481)
++.+-..+|+.- -++.|.|++-.+.+ -+...|..+.+.|.+..+.+-|.-.+-.|.... -
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 455555555542 37778887777766 256689999999999988888877776664421 0
Q ss_pred CCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHH
Q 042941 97 GPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFN 176 (481)
Q Consensus 97 ~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 176 (481)
.|+ ..=..+.-.....|.+++|+.+|.+-.+. ..|=..|...|.+++|.++-+.-.. +. =..+|.
T Consensus 798 ~~~----e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR-iH-Lr~Tyy 862 (1416)
T KOG3617|consen 798 NGE----EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR-IH-LRNTYY 862 (1416)
T ss_pred CCc----chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc-ee-hhhhHH
Confidence 111 11112222345678889999999887653 3455677888999999988765322 11 123444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH----------hcC---------CcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042941 177 IILNGWCNIIGSSREAERVWMEMS----------QRG---------ICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM 237 (481)
Q Consensus 177 ~l~~~~~~~~~~~~~a~~~~~~~~----------~~g---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 237 (481)
....-+- ..++.+.|++.|++.. ... -..|...|..-...+-..|+.+.|+.+|.....
T Consensus 863 ~yA~~Le-ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D- 940 (1416)
T KOG3617|consen 863 NYAKYLE-ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD- 940 (1416)
T ss_pred HHHHHHH-hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-
Confidence 4444444 6778888888776431 110 011333344444444455666666666654432
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042941 238 GIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYH 317 (481)
Q Consensus 238 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 317 (481)
|-++++..|-.|+.++|-++-++- -|....-.+.+.|-..|++.+|...|-.... |.
T Consensus 941 --------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fs 997 (1416)
T KOG3617|consen 941 --------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FS 997 (1416)
T ss_pred --------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HH
Confidence 334555666677777777665543 2556666788888888999999888876532 33
Q ss_pred HHHHHHhchh---------------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH--------HH-
Q 042941 318 AFLDIIRTGE---------------EVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEI--------SE- 373 (481)
Q Consensus 318 ~li~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~- 373 (481)
..|+.|...+ +....-+...+.|.. +...+..|-++|.+.+|+++--+- ..
T Consensus 998 nAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~ 1072 (1416)
T KOG3617|consen 998 NAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAK 1072 (1416)
T ss_pred HHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHH
Confidence 3444433332 222233333333321 223445678888888887653221 11
Q ss_pred -CCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042941 374 -NGNGPDRSSYTALIHALFLNGKLEEAHQY 402 (481)
Q Consensus 374 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 402 (481)
.....|+...+.-..-|+...++++|..+
T Consensus 1073 DLd~~sDp~ll~RcadFF~~~~qyekAV~l 1102 (1416)
T KOG3617|consen 1073 DLDAGSDPKLLRRCADFFENNQQYEKAVNL 1102 (1416)
T ss_pred hcCCCCCHHHHHHHHHHHHhHHHHHHHHHH
Confidence 22234555555555555555555555443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0005 Score=68.04 Aligned_cols=179 Identities=8% Similarity=0.096 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGW 182 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (481)
..++..|.....+.|..++|..+++...+.. +-+......+...+.+.+++++|+..+++.....|.+....+.+..++
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l 164 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSW 164 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 7889999999999999999999999999864 224567778899999999999999999998877777888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHH
Q 042941 183 CNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDA 262 (481)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 262 (481)
. +.|++++|..+|+++...+.. +..++..+..++...|+.++|...|+...+.. .+....|+.++. +...-
T Consensus 165 ~-~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~~~~ 235 (694)
T PRK15179 165 D-EIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DLNAD 235 (694)
T ss_pred H-HhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HHHHH
Confidence 8 999999999999999985432 57788899999999999999999999998763 455566665553 23334
Q ss_pred HHHHHHHHHc----CCCCChhhHHHHHHHHHhc
Q 042941 263 ISLMKSMEEK----GVAPNVVTYNSLIKPLCKA 291 (481)
Q Consensus 263 ~~~~~~~~~~----~~~~~~~~~~~li~~~~~~ 291 (481)
...++++.-. |..........+|..|.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 236 LAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 4555555433 2333444556666666554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0025 Score=55.28 Aligned_cols=192 Identities=11% Similarity=0.069 Sum_probs=135.8
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
++...+|+.-|.....-. +.+-.++-.-...|...|+..-|+.=+..+++. +||... +-..-...+.++|.++.
T Consensus 51 ~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~--ARiQRg~vllK~Gele~ 124 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMA--ARIQRGVVLLKQGELEQ 124 (504)
T ss_pred hhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHH--HHHHhchhhhhcccHHH
Confidence 356667777777665322 233445555667888899999999999998876 677322 22233446788999999
Q ss_pred HHHHHHHHhhcCCCCC--HHh------------HHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcC
Q 042941 122 AINAFYAYKRFKFAVG--IED------------FQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIG 187 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~--~~~------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 187 (481)
|..-|+..+....... ... ....+..+...|+...|+.....+.+..+.|...+..-..+|. ..|
T Consensus 125 A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i-~~~ 203 (504)
T KOG0624|consen 125 AEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYI-AEG 203 (504)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH-hcC
Confidence 9999999987643111 111 1223445666788888888888888888888888888889998 889
Q ss_pred CHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 042941 188 SSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDR 243 (481)
Q Consensus 188 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 243 (481)
++..|+.=++...+..-. ++.++-.+-..+...|+.+.++...++..+. .||.
T Consensus 204 e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdH 256 (504)
T KOG0624|consen 204 EPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDH 256 (504)
T ss_pred cHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccch
Confidence 999888877776665433 4555556667788888888888888888875 3554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.5e-06 Score=47.95 Aligned_cols=33 Identities=36% Similarity=0.515 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042941 381 SSYTALIHALFLNGKLEEAHQYYMEMKEKQLLP 413 (481)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 413 (481)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0012 Score=54.79 Aligned_cols=189 Identities=11% Similarity=-0.048 Sum_probs=107.7
Q ss_pred CChhHHHHHHHHHhcC---C-CCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCCh
Q 042941 79 RKFDTAWALIDEMRGG---E-TGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNV 154 (481)
Q Consensus 79 g~~~~a~~~~~~~~~~---~-~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 154 (481)
.+.++..+++.++... | ..|+. ...|..++-+....|+.+.|...++.+...- +-+..+-..-.-.+-..|++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~--w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEI--WTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchH--HHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 3445555555555331 2 23331 3345555556666677777777776665432 22222222222233445667
Q ss_pred hhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 155 QDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQM 234 (481)
Q Consensus 155 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 234 (481)
++|+++++.+....|.|..++-.-+...- ..|+..+|++-+....+. +..|...|.-+...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilk-a~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILK-AQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHH-HcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 77777777765555666666666555555 566666676666665554 3347777777777777777777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHcC
Q 042941 235 KRMGIECDRKVYNAVIHALAKGR---LVKDAISLMKSMEEKG 273 (481)
Q Consensus 235 ~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~ 273 (481)
.-.. |.++..+..+...+.-.| +.+.+.++|.+..+..
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 6653 334444444444433332 4556777777777653
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.8e-05 Score=58.37 Aligned_cols=93 Identities=11% Similarity=0.071 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhc
Q 042941 107 LILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNII 186 (481)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 186 (481)
..+...+...|++++|...++.....+ +.+...+..+..++...|++++|...++......+.+...+..+...+. ..
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~ 98 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL-AL 98 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-Hc
Confidence 333344444444444444444444332 1233334444444444444444444444433323333344444444444 44
Q ss_pred CCHHHHHHHHHHHHh
Q 042941 187 GSSREAERVWMEMSQ 201 (481)
Q Consensus 187 ~~~~~a~~~~~~~~~ 201 (481)
|++++|...|+...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.1e-06 Score=47.44 Aligned_cols=33 Identities=58% Similarity=0.992 Sum_probs=24.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 042941 280 TYNSLIKPLCKARKLDEARQAFDEMLQRGISPT 312 (481)
Q Consensus 280 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 312 (481)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.4e-05 Score=69.00 Aligned_cols=131 Identities=11% Similarity=0.075 Sum_probs=78.5
Q ss_pred CCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHH
Q 042941 98 PSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNI 177 (481)
Q Consensus 98 p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 177 (481)
|+..+......+++.+...++++.|+.+++++.+.. |+. ...+++.+...++-.+|.+++++.....|.+......
T Consensus 164 ~t~~~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~ 239 (395)
T PF09295_consen 164 PTIVNNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNL 239 (395)
T ss_pred CCCcchHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 344445555556666666666666666666666543 332 2345555555666666666666544444455555665
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCccc-HHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 178 ILNGWCNIIGSSREAERVWMEMSQRGICYD-VVSFSCIISCYSKARNLHKVLRLFDQMK 235 (481)
Q Consensus 178 l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 235 (481)
....+. ..++++.|+.+.+++... .|+ -.+|..|..+|...|+++.|+..++.+.
T Consensus 240 Qa~fLl-~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 240 QAEFLL-SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHH-hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 666666 666677777777666665 333 3466667777777777777776666654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00017 Score=56.14 Aligned_cols=92 Identities=10% Similarity=0.109 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 042941 177 IILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKG 256 (481)
Q Consensus 177 ~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (481)
.+...+. ..|++++|...++.+...+.. +...+..+...+.+.|++++|...++...+.+ +.+...+..+..++...
T Consensus 22 ~~a~~~~-~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 22 ALAYNLY-QQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHH-HcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHc
Confidence 3333344 444444444444444443211 33344444444444444444444444444432 22334444444444444
Q ss_pred CChHHHHHHHHHHHH
Q 042941 257 RLVKDAISLMKSMEE 271 (481)
Q Consensus 257 g~~~~a~~~~~~~~~ 271 (481)
|+++.|...|+...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.14 E-value=5e-06 Score=46.70 Aligned_cols=33 Identities=45% Similarity=0.700 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042941 279 VTYNSLIKPLCKARKLDEARQAFDEMLQRGISP 311 (481)
Q Consensus 279 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 311 (481)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355555555555555555555555555555544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00069 Score=67.98 Aligned_cols=215 Identities=10% Similarity=-0.027 Sum_probs=126.2
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHH------------------
Q 042941 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINA------------------ 125 (481)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~------------------ 125 (481)
+...+..++..+...+++++|.++.+...+. .|+. ...|-.+...+.+.++...+..+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~--i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKS--ISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcc--eehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHH
Confidence 4666777777777777777777777755554 3332 22232222244444444444333
Q ss_pred HHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 042941 126 FYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGIC 205 (481)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~ 205 (481)
+..+... .-+...+-.+..+|-+.|+.+++..+++++..-.+.|..+.|-+...|. .. ++++|.+++.+....-+
T Consensus 106 ~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a-e~-dL~KA~~m~~KAV~~~i- 180 (906)
T PRK14720 106 CDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE-EE-DKEKAITYLKKAIYRFI- 180 (906)
T ss_pred HHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH-Hh-hHHHHHHHHHHHHHHHH-
Confidence 2222221 1122456667777778888888888888865555777888888888888 66 88888888777665411
Q ss_pred ccHHhHHHHHHH-----HHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChh
Q 042941 206 YDVVSFSCIISC-----YSKARNLHKVLRLFDQMKRM-GIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVV 279 (481)
Q Consensus 206 ~~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (481)
+..-|+.+... .....+.+.-..+.+.+... |..--..++-.+-..|-..++++++..+++.+.+...+ |..
T Consensus 181 -~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~ 258 (906)
T PRK14720 181 -KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNK 258 (906)
T ss_pred -hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chh
Confidence 11111211111 11222334444444444432 32333455566667788888999999999999887655 666
Q ss_pred hHHHHHHHHH
Q 042941 280 TYNSLIKPLC 289 (481)
Q Consensus 280 ~~~~li~~~~ 289 (481)
...-++.+|.
T Consensus 259 a~~~l~~~y~ 268 (906)
T PRK14720 259 AREELIRFYK 268 (906)
T ss_pred hHHHHHHHHH
Confidence 6777777776
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00013 Score=66.62 Aligned_cols=130 Identities=10% Similarity=0.027 Sum_probs=102.1
Q ss_pred CHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHH
Q 042941 137 GIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIIS 216 (481)
Q Consensus 137 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 216 (481)
+......|+..+...++++.|..+|+++.... |+ ....++..+. ..++-.+|.+++.+...... .+...+..-..
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~-pe--v~~~LA~v~l-~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~ 242 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD-PE--VAVLLARVYL-LMNEEVEAIRLLNEALKENP-QDSELLNLQAE 242 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC-Cc--HHHHHHHHHH-hcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 34445567778888889999999999977653 33 4556777777 78888899999998886533 26667777778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 217 CYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 217 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
.+.+.++++.|+++.+++.+.. +-+-.+|..|..+|...|+++.|+..++.+.-.
T Consensus 243 fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 8899999999999999998873 445568999999999999999999999888643
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.5e-05 Score=52.86 Aligned_cols=75 Identities=23% Similarity=0.402 Sum_probs=42.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCC--------ChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 042941 215 ISCYSKARNLHKVLRLFDQMKRMGI-ECDRKVYNAVIHALAKGR--------LVKDAISLMKSMEEKGVAPNVVTYNSLI 285 (481)
Q Consensus 215 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~li 285 (481)
|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|++|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444566666666666666665 556666666665555432 2234455666666666666666666666
Q ss_pred HHHH
Q 042941 286 KPLC 289 (481)
Q Consensus 286 ~~~~ 289 (481)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5554
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0042 Score=56.62 Aligned_cols=164 Identities=12% Similarity=0.051 Sum_probs=114.9
Q ss_pred CCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHH
Q 042941 136 VGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCII 215 (481)
Q Consensus 136 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 215 (481)
|+...+...+.+......-..+..++..... -.-...-|..-+..| ..|+++.|+..++.+...-. -|..-+....
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~aa~YG~A~~~~--~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~ 347 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSK-RGGLAAQYGRALQTY--LAGQYDEALKLLQPLIAAQP-DNPYYLELAG 347 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhC-ccchHHHHHHHHHHH--HhcccchHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 4555555555555444444444444333222 112333455555544 58999999999999887622 2455556667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 042941 216 SCYSKARNLHKVLRLFDQMKRMGIECD-RKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKL 294 (481)
Q Consensus 216 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 294 (481)
..+...++.++|.+.++.+... .|+ ....-.+..++.+.|++.+|..+++........ |...|..|.++|...|+.
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 348 DILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCch
Confidence 8889999999999999998886 455 555667788899999999999999988877544 888999999999999999
Q ss_pred HHHHHHHHHHHH
Q 042941 295 DEARQAFDEMLQ 306 (481)
Q Consensus 295 ~~a~~~~~~m~~ 306 (481)
.++..-..+...
T Consensus 425 ~~a~~A~AE~~~ 436 (484)
T COG4783 425 AEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHHHH
Confidence 888887777644
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.016 Score=56.84 Aligned_cols=140 Identities=16% Similarity=0.142 Sum_probs=84.4
Q ss_pred HHHHHHHh-hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH--hccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 042941 34 VSEVLSWV-RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAIL--GKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILI 110 (481)
Q Consensus 34 ~~~~l~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li 110 (481)
+.-+...+ ++....|++....+.++++ |.. |..++.++ .+.|+.++|..+++.....+.. | ..+...+-
T Consensus 13 ~rpi~d~ld~~qfkkal~~~~kllkk~P---n~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D---~~tLq~l~ 84 (932)
T KOG2053|consen 13 LRPIYDLLDSSQFKKALAKLGKLLKKHP---NAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-D---DLTLQFLQ 84 (932)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHHHHCC---CcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-c---hHHHHHHH
Confidence 33344444 3566777777777777663 322 33333333 4677777888777777655333 3 66777777
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHH
Q 042941 111 RRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWC 183 (481)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 183 (481)
..|...++.++|..+|++.... .|+..-...+..+|.+.+++.+-.+.--++...+|.+...+=.+++.+.
T Consensus 85 ~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 85 NVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHH
Confidence 7777778888888888777653 3566666667777777776665443333333334445555555555444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.012 Score=54.40 Aligned_cols=363 Identities=10% Similarity=0.085 Sum_probs=205.5
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhH
Q 042941 62 AHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDF 141 (481)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 141 (481)
+-|..+|+.+|.-+..+ .++++.+.++++... -+.++..|..-|+.-.+.++++.++.+|.+.+..-+ +...|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~----FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW 89 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV----FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLW 89 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc----CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHH
Confidence 45899999999998777 899999999999875 455688999999999999999999999999886543 45555
Q ss_pred HHHHHHHH-cCCChhhHH----HHHhhccC--C-CCCchHhHHHHHHHH---------HHhcCCHHHHHHHHHHHHhcCC
Q 042941 142 QGLLSALC-RYKNVQDAE----HLMFCNKD--V-FPFNTKSFNIILNGW---------CNIIGSSREAERVWMEMSQRGI 204 (481)
Q Consensus 142 ~~ll~~~~-~~~~~~~a~----~~~~~~~~--~-~~~~~~~~~~l~~~~---------~~~~~~~~~a~~~~~~~~~~g~ 204 (481)
...+.--. ..++...+. +.|+-... + ...+...|+..+..+ . ...+.+...++|.++...-+
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~e-e~QRI~~vRriYqral~tPm 168 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYE-ENQRITAVRRIYQRALVTPM 168 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHH-HHHHHHHHHHHHHHHhcCcc
Confidence 55544222 223333322 22322111 2 223444566555432 2 33456667777777776422
Q ss_pred cccH-HhHH------HHHHH-------HHhcCCHHHHHHHHHHHHH--cCCCCCHH---------------HHHHHHHH-
Q 042941 205 CYDV-VSFS------CIISC-------YSKARNLHKVLRLFDQMKR--MGIECDRK---------------VYNAVIHA- 252 (481)
Q Consensus 205 ~~~~-~~~~------~ll~~-------~~~~~~~~~a~~~~~~~~~--~~~~~~~~---------------~~~~li~~- 252 (481)
. +. ..|+ .=|+. --+...+..|..+++++.. .|+..... .|..+|..
T Consensus 169 ~-nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE 247 (656)
T KOG1914|consen 169 H-NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE 247 (656)
T ss_pred c-cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 2 21 1221 11111 1123345566666666543 22211111 12111111
Q ss_pred ------------------------------------------------HHcCCC-------hHHHHHHHHHHHHcCCCCC
Q 042941 253 ------------------------------------------------LAKGRL-------VKDAISLMKSMEEKGVAPN 277 (481)
Q Consensus 253 ------------------------------------------------~~~~g~-------~~~a~~~~~~~~~~~~~~~ 277 (481)
+...|+ -+++..+++.....-...+
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~ 327 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN 327 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 111111 2223333333322211112
Q ss_pred hhhHHHHHHHHH---hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhchh---HHHHHHHHHHHcCCCC-CHHHHH
Q 042941 278 VVTYNSLIKPLC---KARKLDEARQAFDEMLQR-GISPTIRTYHAFLDIIRTGE---EVFGLLESMRKMGCQP-TNDTYI 349 (481)
Q Consensus 278 ~~~~~~li~~~~---~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~ 349 (481)
..+|..+...-- .-++.+.....++++... .+.|+ .+|..+++...+.+ .+..+|....+.+..+ .+.+++
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence 222222211110 111244555555555443 22333 34555555555443 4478888888887666 777888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHhh
Q 042941 350 MLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEP--KTDELLQDWSYN 427 (481)
Q Consensus 350 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~ 427 (481)
+++.-+|. ++..-|.++|+--.+. +..++.--...+.-+...|+-..|..+|++....++.|+. ..|..++..-.+
T Consensus 407 A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~ 484 (656)
T KOG1914|consen 407 ALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN 484 (656)
T ss_pred HHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh
Confidence 88887775 7889999999875543 2223444456777778889989999999999888666554 668888887666
Q ss_pred hhHHHHHHH
Q 042941 428 KQFVERQIA 436 (481)
Q Consensus 428 ~~~~~~~~~ 436 (481)
-|....+++
T Consensus 485 vGdL~si~~ 493 (656)
T KOG1914|consen 485 VGDLNSILK 493 (656)
T ss_pred cccHHHHHH
Confidence 666664443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00068 Score=53.33 Aligned_cols=128 Identities=14% Similarity=0.026 Sum_probs=64.4
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCH--HhHHHH
Q 042941 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGI--EDFQGL 144 (481)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 144 (481)
.|..++..+. .++...+...++.+.+.... ++....+...+...+...|++++|...|+........|.. .....+
T Consensus 14 ~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQALQ-AGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3444444443 56666666666666654111 1111233333445566666666666666666654422221 122334
Q ss_pred HHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 042941 145 LSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWME 198 (481)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 198 (481)
...+...|++++|+..++.... .+.....+......+. ..|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~-~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYL-AQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHH-HCCCHHHHHHHHHH
Confidence 5555666666666666654322 1223334444555555 56666666665553
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.021 Score=56.12 Aligned_cols=381 Identities=11% Similarity=0.119 Sum_probs=209.8
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCC
Q 042941 19 RNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGP 98 (481)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 98 (481)
-+.|++.+-.+...++..+...-.+.+++|..+++......+ .|..+...+-..|.+.|+.++|..+|+..... -|
T Consensus 33 ~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P 108 (932)
T KOG2053|consen 33 GKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YP 108 (932)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CC
Confidence 334455554444444444444445888999988887743332 38899999999999999999999999999876 34
Q ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCC-ChhhHH---------HHHhhc-cCC
Q 042941 99 SLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYK-NVQDAE---------HLMFCN-KDV 167 (481)
Q Consensus 99 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~---------~~~~~~-~~~ 167 (481)
+ ..-...+..+|++.+++.+-.++--++-+ ..+-++..|=++++.+...- ..+.+. +.++.+ ..+
T Consensus 109 ~---eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~ 184 (932)
T KOG2053|consen 109 S---EELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKK 184 (932)
T ss_pred c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccC
Confidence 4 67777788889998877654444333333 22334444444555444332 222222 222222 111
Q ss_pred CCCc----hHhHHHHHHHHHHhcCCHHHHHHHHH-HHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 042941 168 FPFN----TKSFNIILNGWCNIIGSSREAERVWM-EMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECD 242 (481)
Q Consensus 168 ~~~~----~~~~~~l~~~~~~~~~~~~~a~~~~~-~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 242 (481)
.+-. ...|-.++ - ..|.+++|..++. ...+.-...+...-+.-+..+...+++.+..++-.++...|. |
T Consensus 185 gk~~s~aE~~Lyl~iL---~-~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~--D 258 (932)
T KOG2053|consen 185 GKIESEAEIILYLLIL---E-LQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN--D 258 (932)
T ss_pred CccchHHHHHHHHHHH---H-hcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC--c
Confidence 0111 12233332 2 6788999999994 343333333455556677888899999999999999998862 3
Q ss_pred HHHHHHHHHHHHc----C------------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH---hcCCHHHHHHHHHH
Q 042941 243 RKVYNAVIHALAK----G------------RLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLC---KARKLDEARQAFDE 303 (481)
Q Consensus 243 ~~~~~~li~~~~~----~------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~a~~~~~~ 303 (481)
. |...+..+.+ . +..+...+..++.... -....|-+-+.++. .-|+.+++...|-+
T Consensus 259 d--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~---~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~ 333 (932)
T KOG2053|consen 259 D--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGS---KSRGPYLARLELDKRYKLIGDSEEMLSYYFK 333 (932)
T ss_pred c--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcc---cccCcHHHHHHHHHHhcccCChHHHHHHHHH
Confidence 2 4443332221 1 1112222222222211 02233444444444 44788876655543
Q ss_pred HHHCCCCC-------------CHHHHHHHHHHHhc--------------------------------hhHHHHHHHHHH-
Q 042941 304 MLQRGISP-------------TIRTYHAFLDIIRT--------------------------------GEEVFGLLESMR- 337 (481)
Q Consensus 304 m~~~~~~p-------------~~~~~~~li~~~~~--------------------------------~~~~~~~~~~~~- 337 (481)
-. |..| +..-...++..+.. .+.....+..+.
T Consensus 334 kf--g~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~ 411 (932)
T KOG2053|consen 334 KF--GDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKL 411 (932)
T ss_pred Hh--CCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence 21 1111 11111122221110 111222222221
Q ss_pred --HcC------CCCCHH---------HHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042941 338 --KMG------CQPTND---------TYIMLIKKFSRWRQFGN---VFKVWNEISENGNGPDRSSYTALIHALFLNGKLE 397 (481)
Q Consensus 338 --~~~------~~~~~~---------~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 397 (481)
+.| +-|+.. +-+.++..|-+.++... |+-+++.-.... +.|..+=-.+|..|.-.|-+.
T Consensus 412 ~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p 490 (932)
T KOG2053|consen 412 TYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFP 490 (932)
T ss_pred HHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCCh
Confidence 222 223322 23567788888888664 444444433322 234555557888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHH
Q 042941 398 EAHQYYMEMKEKQLLPEPKTDELL 421 (481)
Q Consensus 398 ~A~~~~~~m~~~~~~p~~~~~~~l 421 (481)
.|.++|+.+--+.+.-|..-|.++
T Consensus 491 ~a~~~y~tLdIK~IQ~DTlgh~~~ 514 (932)
T KOG2053|consen 491 DAYELYKTLDIKNIQTDTLGHLIF 514 (932)
T ss_pred hHHHHHHhcchHHhhhccchHHHH
Confidence 999999988766676666555443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00046 Score=54.33 Aligned_cols=20 Identities=5% Similarity=-0.140 Sum_probs=8.6
Q ss_pred HHHHHHHcCCChHHHHHHHH
Q 042941 248 AVIHALAKGRLVKDAISLMK 267 (481)
Q Consensus 248 ~li~~~~~~g~~~~a~~~~~ 267 (481)
.....|.+.|+.++|...|+
T Consensus 123 ~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 123 LLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHH
Confidence 33344444444444444443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00016 Score=66.33 Aligned_cols=125 Identities=15% Similarity=0.093 Sum_probs=87.3
Q ss_pred CCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 042941 166 DVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR--GICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDR 243 (481)
Q Consensus 166 ~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 243 (481)
...+-+......++.... ...+.+.+..++.+.... ....-..|..++++.|.+.|..+.++.+++.=...|+-||.
T Consensus 60 ~~~~vS~~dld~fvn~~~-~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVE-SKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred cCCCCcHHHHHHHHhhcC-CHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 334455666666666666 666677777777777654 22222334567888888888888888888887778888888
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 042941 244 KVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKA 291 (481)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 291 (481)
.+++.||..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888888777666655666666666665554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00018 Score=66.01 Aligned_cols=124 Identities=13% Similarity=0.108 Sum_probs=105.6
Q ss_pred cCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCC---CCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccH
Q 042941 132 FKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDV---FPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDV 208 (481)
Q Consensus 132 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 208 (481)
.+.+.+......+++.+....+++.+..++.+.+.. ...-..+..++++.|. +.|..+.++.++..=...|+-||.
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l-~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCL-ELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHH-hcCCHHHHHHHHhChhhcccCCCh
Confidence 344567778888999999999999999998876543 2233445679999999 999999999999999999999999
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 042941 209 VSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKG 256 (481)
Q Consensus 209 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (481)
.++|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999998887777888888777777666
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.1e-05 Score=44.16 Aligned_cols=30 Identities=33% Similarity=0.593 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042941 382 SYTALIHALFLNGKLEEAHQYYMEMKEKQL 411 (481)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 411 (481)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777776653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00022 Score=50.99 Aligned_cols=79 Identities=15% Similarity=0.235 Sum_probs=66.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHhHHH
Q 042941 349 IMLIKKFSRWRQFGNVFKVWNEISENGN-GPDRSSYTALIHALFLNG--------KLEEAHQYYMEMKEKQLLPEPKTDE 419 (481)
Q Consensus 349 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~ 419 (481)
...|..|...+++...-.+|+.+++.|+ -|+..+|+.++.+..+.. +.-+.+.+|+.|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455666667999999999999999999 899999999999887653 2446788999999999999999999
Q ss_pred HHHHHHhh
Q 042941 420 LLQDWSYN 427 (481)
Q Consensus 420 ~l~~~~~~ 427 (481)
+++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.9e-05 Score=42.36 Aligned_cols=29 Identities=55% Similarity=0.896 Sum_probs=16.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 280 TYNSLIKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 280 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00082 Score=54.64 Aligned_cols=106 Identities=17% Similarity=0.308 Sum_probs=66.7
Q ss_pred ccHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhh
Q 042941 206 YDVVSFSCIISCYSKA-----RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVT 280 (481)
Q Consensus 206 ~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 280 (481)
.|..+|..++..|.+. |..+-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ------------- 109 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ------------- 109 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH-------------
Confidence 4667777777776643 5566666677777777777777777777776654 2221 111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHH
Q 042941 281 YNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVF 330 (481)
Q Consensus 281 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 330 (481)
++...| -.+-+-|++++++|...|+.||..++..+++.+++.+.+.
T Consensus 110 --~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~ 155 (228)
T PF06239_consen 110 --AEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPM 155 (228)
T ss_pred --HHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHH
Confidence 111111 1345667788888888888888888888888877776663
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00093 Score=58.97 Aligned_cols=131 Identities=13% Similarity=0.127 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHH-HHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHH
Q 042941 66 REYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRR-YCAVHDVGRAINAFYAYKRFKFAVGIEDFQGL 144 (481)
Q Consensus 66 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 144 (481)
.+|..++...-+.+..+.|..+|.+..+. ...+...|...... +...++.+.|..+|+...+. ...+...|...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~----~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y 76 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD----KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHH
Confidence 35666666666666677777777776643 11123344433333 22245555677777666653 33455566666
Q ss_pred HHHHHcCCChhhHHHHHhhccCCCCCch---HhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 042941 145 LSALCRYKNVQDAEHLMFCNKDVFPFNT---KSFNIILNGWCNIIGSSREAERVWMEMSQR 202 (481)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 202 (481)
++.+...++.+.|..+|++.....+++. ..|...+..=. +.|+.+.+.++.+++.+.
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~-~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFES-KYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHH-HHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 6666666666667666666554443333 35666666555 666666666666665553
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00073 Score=51.07 Aligned_cols=97 Identities=14% Similarity=0.056 Sum_probs=43.7
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhcCCCCCC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CCHHhHHHH
Q 042941 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPS-LVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFA--VGIEDFQGL 144 (481)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 144 (481)
+......+.+.|++++|.+.|+.+.+.. |+ +....++..+...+...|+++.|...|+.+...... .....+..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3444445555555555555555554431 11 111234444555555555555555555555432211 012233344
Q ss_pred HHHHHcCCChhhHHHHHhhccC
Q 042941 145 LSALCRYKNVQDAEHLMFCNKD 166 (481)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~ 166 (481)
..++.+.|+.++|...++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHH
Confidence 4444445555555555544433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00084 Score=48.04 Aligned_cols=91 Identities=19% Similarity=0.224 Sum_probs=45.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 042941 214 IISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARK 293 (481)
Q Consensus 214 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 293 (481)
+...+...|++++|...++...+.. +.+...+..+..++...+++++|.+.++...+.... +..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHHh
Confidence 3444445555555555555554432 223344444555555555555555555555544322 23344455555555555
Q ss_pred HHHHHHHHHHHHH
Q 042941 294 LDEARQAFDEMLQ 306 (481)
Q Consensus 294 ~~~a~~~~~~m~~ 306 (481)
++.|...+....+
T Consensus 84 ~~~a~~~~~~~~~ 96 (100)
T cd00189 84 YEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHc
Confidence 5555555555443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00056 Score=55.58 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHHH
Q 042941 397 EEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVE 432 (481)
Q Consensus 397 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 432 (481)
+-|++++++|...|+.||..|+.+++..+++.+..-
T Consensus 120 ~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~ 155 (228)
T PF06239_consen 120 ECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPM 155 (228)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHH
Confidence 456666666766666777777666666666555444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.038 Score=49.49 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=83.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 042941 278 VVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSR 357 (481)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 357 (481)
..+.+..|.-+...|+...|.++-++.. .|+...|...+.+++..+++.++.+.... +-++.-|..++.+|.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 4455666777788888888887766652 37888888889999988888777766554 2344678889999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042941 358 WRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYME 405 (481)
Q Consensus 358 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (481)
.|+..+|..++..+ + +..-+..|.+.|++.+|.+...+
T Consensus 250 ~~~~~eA~~yI~k~------~----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 250 YGNKKEASKYIPKI------P----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCCHHHHHHHHHhC------C----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999998887762 1 24567788899999998876544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0017 Score=49.01 Aligned_cols=60 Identities=7% Similarity=-0.034 Sum_probs=24.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 213 CIISCYSKARNLHKVLRLFDQMKRMGI--ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 213 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
.+..++.+.|+++.|...|+.+..... +.....+..+..++.+.|+.++|...++++.+.
T Consensus 44 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 44 WLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 344444444444444444444443210 001223333444444444444444444444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.035 Score=47.80 Aligned_cols=69 Identities=16% Similarity=0.077 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 042941 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFK 133 (481)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 133 (481)
+...+-.....+.+.|++++|.+.|+.+......+ +....+.-.+..++.+.++++.|...+++..+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 33334344555566788888888888887762211 1112223456677788888888888888887653
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00094 Score=47.77 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=6.9
Q ss_pred HHhccCChhHHHHHHHHH
Q 042941 74 ILGKVRKFDTAWALIDEM 91 (481)
Q Consensus 74 ~~~~~g~~~~a~~~~~~~ 91 (481)
.+...|++++|...++..
T Consensus 9 ~~~~~~~~~~A~~~~~~~ 26 (100)
T cd00189 9 LYYKLGDYDEALEYYEKA 26 (100)
T ss_pred HHHHHhcHHHHHHHHHHH
Confidence 333333333333333333
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00019 Score=50.25 Aligned_cols=80 Identities=11% Similarity=0.220 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHhcCCc-ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 042941 187 GSSREAERVWMEMSQRGIC-YDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISL 265 (481)
Q Consensus 187 ~~~~~a~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 265 (481)
|+++.|+.+++++.+.... ++...+-.+..++.+.|++++|..+++. .+.+ +.+....-.+..+|.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555555554321 1233333355555556666666555555 2221 11222222335555555555555555
Q ss_pred HHH
Q 042941 266 MKS 268 (481)
Q Consensus 266 ~~~ 268 (481)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0031 Score=51.25 Aligned_cols=85 Identities=8% Similarity=-0.083 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--HHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHH
Q 042941 104 QTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG--IEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNG 181 (481)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 181 (481)
..+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+.+.....+.+...+..+...
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3444444444555555555555555443321111 23344444555555555555555544333333334444444444
Q ss_pred HHHhcCCH
Q 042941 182 WCNIIGSS 189 (481)
Q Consensus 182 ~~~~~~~~ 189 (481)
+. ..|+.
T Consensus 116 ~~-~~g~~ 122 (172)
T PRK02603 116 YH-KRGEK 122 (172)
T ss_pred HH-HcCCh
Confidence 44 44443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.018 Score=49.60 Aligned_cols=183 Identities=11% Similarity=0.043 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhH---HHHHHHHHcCCChhhHHHHHhhccCCCCCchH-hHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDF---QGLLSALCRYKNVQDAEHLMFCNKDVFPFNTK-SFNII 178 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l 178 (481)
+..+-.....+...|++++|...|+.+...-..+ ...- -.+..++.+.+++++|...+++.....|.+.. -+...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 4444445555566788888888888887643221 2222 34567778888888888888775443332222 22222
Q ss_pred HHHHHH-hcC---------------CH---HHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 042941 179 LNGWCN-IIG---------------SS---REAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGI 239 (481)
Q Consensus 179 ~~~~~~-~~~---------------~~---~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 239 (481)
+.+.+. ..+ +. ..|.. ++..+++-|=.+.-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~---------------~~~~li~~yP~S~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR---------------DFSKLVRGYPNSQYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH---------------HHHHHHHHCcCChhHHHHHHHHHHHHHH--
Confidence 232220 010 11 11222 2333344344444445555444444321
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 240 ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKG--VAPNVVTYNSLIKPLCKARKLDEARQAFDEML 305 (481)
Q Consensus 240 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 305 (481)
.- ..--.+.+.|.+.|.+..|..-++.+.+.- .+........++.+|...|..++|..+...+.
T Consensus 174 -la-~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 -LA-KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -HH-HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 00 111245667888888888888888888752 22234455677788888899888888776654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0048 Score=47.91 Aligned_cols=92 Identities=8% Similarity=-0.006 Sum_probs=57.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 042941 213 CIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKAR 292 (481)
Q Consensus 213 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 292 (481)
.+...+...|++++|..+|+.+...+ +-+..-|-.|.-++-..|++++|...|.......+. |...+-.+-.++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcC
Confidence 34444556677777777776666654 334455555666666667777777777766666543 5666666666666777
Q ss_pred CHHHHHHHHHHHHH
Q 042941 293 KLDEARQAFDEMLQ 306 (481)
Q Consensus 293 ~~~~a~~~~~~m~~ 306 (481)
+.+.|.+.|+..+.
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777766665544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0021 Score=56.82 Aligned_cols=130 Identities=12% Similarity=0.084 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHH-HHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHH
Q 042941 105 TLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSA-LCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWC 183 (481)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 183 (481)
+|..+++...+.+..+.|..+|.+.++.+ ..+...|...... +.-.++.+.|..+|+.....++.+...|...+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 56667777777777777777777776432 2233344433333 333455666777777755556667777777777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCccc---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042941 184 NIIGSSREAERVWMEMSQRGICYD---VVSFSCIISCYSKARNLHKVLRLFDQMKRM 237 (481)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 237 (481)
..++.+.|..+|++.... +.++ ...|...+..=.+.|+.+.+.++.+.+.+.
T Consensus 82 -~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 -KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp -HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred -HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777655 2222 236666777666777777777777666654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0039 Score=57.22 Aligned_cols=91 Identities=9% Similarity=-0.058 Sum_probs=62.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh
Q 042941 180 NGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLV 259 (481)
Q Consensus 180 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 259 (481)
..+. ..|++++|+..|++....... +...|..+..+|.+.|++++|+..++.+.... +.+...|..+..+|...|++
T Consensus 10 ~~a~-~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAF-VDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHH-HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 3344 567777777777777765433 45566666677777777777777777777654 34566677777777777777
Q ss_pred HHHHHHHHHHHHcC
Q 042941 260 KDAISLMKSMEEKG 273 (481)
Q Consensus 260 ~~a~~~~~~~~~~~ 273 (481)
++|...|++..+..
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777777653
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00031 Score=49.22 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=7.9
Q ss_pred HHHHHHcCCChhhHHHHHh
Q 042941 144 LLSALCRYKNVQDAEHLMF 162 (481)
Q Consensus 144 ll~~~~~~~~~~~a~~~~~ 162 (481)
+..++.+.|++++|..+++
T Consensus 31 la~~~~~~~~y~~A~~~~~ 49 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQ 49 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 3344444444444444443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.018 Score=45.58 Aligned_cols=134 Identities=13% Similarity=0.083 Sum_probs=99.7
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CCHHh
Q 042941 62 AHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFA-VGIED 140 (481)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~ 140 (481)
-|++..--.+..++.+.|+..+|...|++...--...| ......+.++....+++..|...++++-+.+.. .++.+
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d---~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD---AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC---HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 38888888999999999999999999999887444445 888888999999999999999999998875421 23444
Q ss_pred HHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 141 FQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMS 200 (481)
Q Consensus 141 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 200 (481)
...+.+.+...|...+|+.-|+...+- -|+...-......+. +.|+.+++..-+..+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~-ypg~~ar~~Y~e~La-~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY-YPGPQARIYYAEMLA-KQGRLREANAQYVAVV 220 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh-CCCHHHHHHHHHHHH-HhcchhHHHHHHHHHH
Confidence 556778899999999999999875542 345544434444445 7777766665444443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.012 Score=47.77 Aligned_cols=84 Identities=12% Similarity=-0.041 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042941 174 SFNIILNGWCNIIGSSREAERVWMEMSQRGICYD--VVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIH 251 (481)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 251 (481)
.+..+...+. ..|++++|...|++....+..++ ...+..+...+.+.|++++|...+.+..+.. +-+...+..+..
T Consensus 37 ~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQ-ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3444444455 55666666666665554432221 2345555566666666666666666665542 223444445555
Q ss_pred HHHcCCCh
Q 042941 252 ALAKGRLV 259 (481)
Q Consensus 252 ~~~~~g~~ 259 (481)
++...|+.
T Consensus 115 ~~~~~g~~ 122 (172)
T PRK02603 115 IYHKRGEK 122 (172)
T ss_pred HHHHcCCh
Confidence 55555543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0067 Score=47.12 Aligned_cols=99 Identities=8% Similarity=0.006 Sum_probs=74.0
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042941 171 NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVI 250 (481)
Q Consensus 171 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 250 (481)
+......+...+. ..|++++|.++|+.+....+. +..-|-.|.-++-..|++++|+..|......+ +-|+..+-.+.
T Consensus 34 ~l~~lY~~A~~ly-~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag 110 (157)
T PRK15363 34 PLNTLYRYAMQLM-EVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence 3344444555556 788888888888888776433 44556667777888888888888888888876 45778888888
Q ss_pred HHHHcCCChHHHHHHHHHHHHc
Q 042941 251 HALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
.++...|+.+.|.+.|+.....
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888877654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0088 Score=44.66 Aligned_cols=51 Identities=14% Similarity=-0.014 Sum_probs=22.7
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCC--HHhHHHHHHHHHcCCChhhHHHHHhh
Q 042941 113 YCAVHDVGRAINAFYAYKRFKFAVG--IEDFQGLLSALCRYKNVQDAEHLMFC 163 (481)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~ 163 (481)
+-..|+.++|+.+|+.....|+... ...+..+...+...|++++|..+++.
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~ 63 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEE 63 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344555555555555554443322 12233344444444555555555444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.022 Score=54.81 Aligned_cols=76 Identities=16% Similarity=0.077 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 042941 342 QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELL 421 (481)
Q Consensus 342 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 421 (481)
+.+...|..+.-.....|++++|...+++..+.. |+...|..+...+...|+.++|.+.+++... +.|...||...
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~~~~ 492 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTLYWI 492 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchHHHH
Confidence 4455677777666777899999999999999864 6888999999999999999999999999876 56776665443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0048 Score=56.60 Aligned_cols=85 Identities=11% Similarity=-0.004 Sum_probs=37.0
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHH
Q 042941 115 AVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAER 194 (481)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~ 194 (481)
..|+++.|+..|+++.+.+ +-+...|..+..+|...|++++|+..+++.....+.+...|..+..++. ..|++++|..
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~-~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM-KLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HhCCHHHHHH
Confidence 3444444444444444332 1133334444444444444444444444433333334444444444444 4455555555
Q ss_pred HHHHHHh
Q 042941 195 VWMEMSQ 201 (481)
Q Consensus 195 ~~~~~~~ 201 (481)
.|+....
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 4444444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.046 Score=48.51 Aligned_cols=148 Identities=9% Similarity=0.084 Sum_probs=77.0
Q ss_pred HHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhc-CCHHHHHHHHHHHHhc----CCc-ccHHhHHHHH
Q 042941 142 QGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNII-GSSREAERVWMEMSQR----GIC-YDVVSFSCII 215 (481)
Q Consensus 142 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~a~~~~~~~~~~----g~~-~~~~~~~~ll 215 (481)
...+..|...|++..|-+++.. +...|- .. |+++.|.+.|++..+. |-. .-...+..+.
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~--------------lA~~ye-~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A 162 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKE--------------LAEIYE-EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAA 162 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH--------------HHHHHC-CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHH--------------HHHHHH-HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHH
Confidence 3344556666666666554433 333444 44 6777777777765432 211 1123455667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC--C--hhhHHHHH
Q 042941 216 SCYSKARNLHKVLRLFDQMKRMGIE-----CDRK-VYNAVIHALAKGRLVKDAISLMKSMEEKGVAP--N--VVTYNSLI 285 (481)
Q Consensus 216 ~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~--~~~~~~li 285 (481)
..+.+.|++++|.++|++....... .+.. .+-..+-++...||+..|.+.+++.....+.. + ......||
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~ 242 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLL 242 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 7788888888888888887764322 1221 22233445666788888888888876543211 1 22334455
Q ss_pred HHHHh--cCCHHHHHHHHHHH
Q 042941 286 KPLCK--ARKLDEARQAFDEM 304 (481)
Q Consensus 286 ~~~~~--~g~~~~a~~~~~~m 304 (481)
.+|-. ...+..+..-|+.+
T Consensus 243 ~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 243 EAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHhCCHHHHHHHHHHHccc
Confidence 55432 12344444444444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.015 Score=47.04 Aligned_cols=79 Identities=13% Similarity=-0.082 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042941 174 SFNIILNGWCNIIGSSREAERVWMEMSQRGICY--DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIH 251 (481)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 251 (481)
.+..+...+. ..|++++|+..|+........+ ...++..+...+...|++++|...++...... +....++..+..
T Consensus 37 ~~~~~g~~~~-~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 37 TYYRDGMSAQ-SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 3444444444 5566666666666655442221 12355555666666666666666666665542 223334444444
Q ss_pred HHH
Q 042941 252 ALA 254 (481)
Q Consensus 252 ~~~ 254 (481)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.038 Score=46.38 Aligned_cols=131 Identities=14% Similarity=-0.002 Sum_probs=61.3
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHH--
Q 042941 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLL-- 145 (481)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-- 145 (481)
-++++..+.-.|.+.-..+++.++.+....-+ +.....+.+...+.||.+.|...|++..+..-+.+..+.+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~---p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQE---PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCccc---HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 34444555555555556666666555432222 4455555555555566666666665554333233333333222
Q ss_pred ---HHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 042941 146 ---SALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR 202 (481)
Q Consensus 146 ---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 202 (481)
..|.-.+++-.|...+.++....+.++..-|.-.-+.. -.|+...|++.++.|...
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll-Ylg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL-YLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH-HHHHHHHHHHHHHHHhcc
Confidence 22333444444555554444333334433333222222 335555555555555544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0017 Score=43.18 Aligned_cols=64 Identities=9% Similarity=0.195 Sum_probs=51.3
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 042941 356 SRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQ 422 (481)
Q Consensus 356 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 422 (481)
...|++++|.++|+++...... +...+..+..+|.+.|++++|..+++++... .|+...+..+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 4679999999999999886433 7778888999999999999999999998874 57765555444
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0011 Score=44.22 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=27.6
Q ss_pred ccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042941 77 KVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKR 131 (481)
Q Consensus 77 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 131 (481)
+.|++++|+++|+.+... ++.+..++..+..++.+.|++++|..+++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR----NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH----TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445556666666655554 222355555555566666666666666655554
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0022 Score=42.25 Aligned_cols=58 Identities=16% Similarity=0.315 Sum_probs=49.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 351 LIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 351 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
+...+...|++++|.+.|+++.+... -+...+..+..++.+.|++++|..+|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45678899999999999999998753 36778889999999999999999999998763
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0027 Score=41.80 Aligned_cols=58 Identities=12% Similarity=0.068 Sum_probs=46.1
Q ss_pred HHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 042941 71 MIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRF 132 (481)
Q Consensus 71 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 132 (481)
+...+.+.|++++|.+.|+.+.+. ++.+...+..+...+...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ----DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC----STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455677888899999999988887 3445788888888888889999999888888764
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.031 Score=49.64 Aligned_cols=168 Identities=11% Similarity=0.131 Sum_probs=95.9
Q ss_pred CHHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHcC-CChHHHHHHHHHHHHc----CCCC--ChhhHHHHHHHHH
Q 042941 223 NLHKVLRLFDQMKR----MGIECD--RKVYNAVIHALAKG-RLVKDAISLMKSMEEK----GVAP--NVVTYNSLIKPLC 289 (481)
Q Consensus 223 ~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~ 289 (481)
++++|...++.... .| .|+ ...+..+...|... |+++.|.+.|++..+. + .+ -...+..+...+.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYA 166 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHH
Confidence 55555555555432 22 222 22445566667777 8999999999887543 2 11 1334566778889
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhHHHHHH
Q 042941 290 KARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTND-TYIMLIKKFSRWRQFGNVFKVW 368 (481)
Q Consensus 290 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~ 368 (481)
+.|++++|.++|++........+.. +.+.. .|...+-++...|++..|.+.+
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~---------------------------~~~~~~~~l~a~l~~L~~~D~v~A~~~~ 219 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLL---------------------------KYSAKEYFLKAILCHLAMGDYVAARKAL 219 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTT---------------------------GHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhccccc---------------------------chhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999987754321110 11111 2223333556678999999999
Q ss_pred HHHHHC--CCCCC--HHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 042941 369 NEISEN--GNGPD--RSSYTALIHALFL--NGKLEEAHQYYMEMKEKQLLPEPKTDELLQD 423 (481)
Q Consensus 369 ~~~~~~--~~~~~--~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 423 (481)
++.... ++..+ ......|+.+|-. ...+++|+.-|+.+. +.|++--.+|+.
T Consensus 220 ~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~----~ld~w~~~~l~~ 276 (282)
T PF14938_consen 220 ERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS----RLDNWKTKMLLK 276 (282)
T ss_dssp HHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-------HHHHHHHHH
T ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC----ccHHHHHHHHHH
Confidence 988764 33323 3356667777654 345677777776653 456666555554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.055 Score=40.45 Aligned_cols=99 Identities=14% Similarity=0.104 Sum_probs=52.7
Q ss_pred hcCCHHHHHHHHHHHHhcCCccc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCC
Q 042941 185 IIGSSREAERVWMEMSQRGICYD--VVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECD----RKVYNAVIHALAKGRL 258 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~ 258 (481)
..|+.++|+.+|++....|+..+ ...+-.+...+...|++++|..+++...... |+ ......+.-++...|+
T Consensus 13 ~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~~gr 90 (120)
T PF12688_consen 13 SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYNLGR 90 (120)
T ss_pred hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHHCCC
Confidence 56667777777776666665533 2234445556666677777777776665541 22 1122222334556666
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 042941 259 VKDAISLMKSMEEKGVAPNVVTYNSLIKPLC 289 (481)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 289 (481)
.++|...+-..... +...|..-|..|.
T Consensus 91 ~~eAl~~~l~~la~----~~~~y~ra~~~ya 117 (120)
T PF12688_consen 91 PKEALEWLLEALAE----TLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 66666666554432 3334444444443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0065 Score=47.87 Aligned_cols=74 Identities=19% Similarity=0.286 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhHHHHH
Q 042941 347 TYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKE-----KQLLPEPKTDELL 421 (481)
Q Consensus 347 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~l 421 (481)
....++..+...|+++.|..+.+.+....+ .+...|..+|.+|...|+..+|.++|+++.. .|+.|++.+-...
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~ 142 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY 142 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence 556677888899999999999999998643 4788999999999999999999999998744 3999999886554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.032 Score=46.73 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=39.0
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 042941 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRF 132 (481)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 132 (481)
.-.....+...|++.+|...|+.+..... .++....+...++.++-+.|+++.|...++...+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P-~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYP-NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-T-TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33344455567777777777777766421 13334556666777777777777777777776653
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0024 Score=42.62 Aligned_cols=64 Identities=13% Similarity=0.092 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcC-CHHHHHHHHHHHhh
Q 042941 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH-DVGRAINAFYAYKR 131 (481)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~ 131 (481)
+...|..+...+...|++++|+..|++..+. ++.++..|..+..++...| ++++|+..++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~----~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL----DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH----STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4556777777777777777777777777765 4444667777777777777 57777777776665
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.014 Score=47.30 Aligned_cols=63 Identities=11% Similarity=-0.039 Sum_probs=25.4
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 042941 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYK 130 (481)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 130 (481)
.|..+...+...|++++|+..|+........|. ....++..+...+...|++++|+..++...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~-~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY-DRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccch-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444444444433211110 012234444444444444444444444444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.055 Score=52.17 Aligned_cols=138 Identities=10% Similarity=0.060 Sum_probs=89.0
Q ss_pred CCCCCchHhHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCccc-HHhHHHHHHHHHhc--------CCHHHHHHHH
Q 042941 166 DVFPFNTKSFNIILNGWCNII-----GSSREAERVWMEMSQRGICYD-VVSFSCIISCYSKA--------RNLHKVLRLF 231 (481)
Q Consensus 166 ~~~~~~~~~~~~l~~~~~~~~-----~~~~~a~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~--------~~~~~a~~~~ 231 (481)
...+.+...|...+++.. .. ++...|..+|++..+. .|+ ...|..+..++... .+...+.+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~-~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHH-YLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 345567777777777644 22 2366788888888776 333 33444333332221 1233444444
Q ss_pred HHHHHc-CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 232 DQMKRM-GIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 232 ~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
...... ..+.+...|.++.-.....|++++|...+++....+ |+...|..+...+...|++++|.+.+++..+.+
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 443332 234455677777666667788999999999888864 577788888888888999999999988877654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.07 Score=45.91 Aligned_cols=93 Identities=17% Similarity=0.134 Sum_probs=53.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 042941 185 IIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAIS 264 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 264 (481)
+.+++.+|+..|.+.+....+ |.+-|..-..+|++.|.++.|++-.+.....+ +-...+|..|..+|...|++++|.+
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHHH
Confidence 456666666666666655322 44455555566666666666666655555543 2334566666666666666666666
Q ss_pred HHHHHHHcCCCCChhhH
Q 042941 265 LMKSMEEKGVAPNVVTY 281 (481)
Q Consensus 265 ~~~~~~~~~~~~~~~~~ 281 (481)
.|++..+. .|+-.+|
T Consensus 171 aykKaLel--dP~Ne~~ 185 (304)
T KOG0553|consen 171 AYKKALEL--DPDNESY 185 (304)
T ss_pred HHHhhhcc--CCCcHHH
Confidence 66666553 3444444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.01 Score=50.74 Aligned_cols=84 Identities=10% Similarity=-0.057 Sum_probs=39.2
Q ss_pred ccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhh
Q 042941 77 KVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQD 156 (481)
Q Consensus 77 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 156 (481)
+.+++++|+..|.+.++. ++.++..|..-..+|.+.|..+.|++-.+..+..+ +....+|..|..+|...|++++
T Consensus 93 ~~~~Y~eAv~kY~~AI~l----~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIEL----DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HhhhHHHHHHHHHHHHhc----CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 444555555555555443 33334444444455555555555555444444432 1123344455555555555555
Q ss_pred HHHHHhhcc
Q 042941 157 AEHLMFCNK 165 (481)
Q Consensus 157 a~~~~~~~~ 165 (481)
|++.|++..
T Consensus 168 A~~aykKaL 176 (304)
T KOG0553|consen 168 AIEAYKKAL 176 (304)
T ss_pred HHHHHHhhh
Confidence 555544433
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.3 Score=44.68 Aligned_cols=166 Identities=14% Similarity=0.141 Sum_probs=90.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCC----CCChhhHHHHHHHHHhc--------CC-------HHHHHHHHHHHHHC
Q 042941 247 NAVIHALAKGRLVKDAISLMKSMEEKGV----APNVVTYNSLIKPLCKA--------RK-------LDEARQAFDEMLQR 307 (481)
Q Consensus 247 ~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~--------g~-------~~~a~~~~~~m~~~ 307 (481)
+..+.++...|++.++..+++++...=. ..++.+|+.++-.+.++ .. ++.+.-+.++|...
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~ 211 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAF 211 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence 4455666667777777766666654322 24666666544333321 11 23333333333222
Q ss_pred ------CCCCCHHHHHHHHHHHhchh-----HHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 042941 308 ------GISPTIRTYHAFLDIIRTGE-----EVFGLLESMRKMGCQPTND-TYIMLIKKFSRWRQFGNVFKVWNEISENG 375 (481)
Q Consensus 308 ------~~~p~~~~~~~li~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 375 (481)
.+.|....+..++....-.. -..++++.....-+.|+-. +...++..+.. +.+++..+.+.+....
T Consensus 212 d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~ 289 (549)
T PF07079_consen 212 DQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSK 289 (549)
T ss_pred hhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHh
Confidence 23344444555554433221 1255555555555666543 34455555555 6666666666555432
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 042941 376 NGP----DRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPK 416 (481)
Q Consensus 376 ~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 416 (481)
+.+ -..++..++....+.++..+|-..+.-+.- +.|+..
T Consensus 290 i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~s 332 (549)
T PF07079_consen 290 IEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRIS 332 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcch
Confidence 211 244678888888999999999998887765 345544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0057 Score=40.80 Aligned_cols=61 Identities=11% Similarity=0.145 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHH
Q 042941 210 SFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGR-LVKDAISLMKSMEE 271 (481)
Q Consensus 210 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~ 271 (481)
+|..+...+...|++++|+..|.+..+.+ +.+...|..+..++...| ++++|.+.+++..+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34444444444444555544444444442 223444444444444444 34444444444433
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0061 Score=48.01 Aligned_cols=70 Identities=13% Similarity=0.202 Sum_probs=40.7
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHh-----hcCCCCCHHh
Q 042941 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYK-----RFKFAVGIED 140 (481)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~ 140 (481)
+...++..+...|+++.|..+++.+... +|.+...|..+|+++...|+...|+..|+.+. +.|+.|++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~----dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL----DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH----STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444455555667777777777777665 55556777777777777777777777776654 2466666554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.052 Score=46.81 Aligned_cols=103 Identities=9% Similarity=-0.032 Sum_probs=70.0
Q ss_pred CCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCcccHHhHH
Q 042941 135 AVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIG--SSREAERVWMEMSQRGICYDVVSFS 212 (481)
Q Consensus 135 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~ 212 (481)
+-|...|-.|...|...|+++.|..-|.+.....+++...+..+..++....| ...++..+|+++...... |+.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence 34677777788888888888888877777655556666666666665552222 335677777777766333 555666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042941 213 CIISCYSKARNLHKVLRLFDQMKRMG 238 (481)
Q Consensus 213 ~ll~~~~~~~~~~~a~~~~~~~~~~~ 238 (481)
.|...+...|++.+|...++.|.+..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 66677777888888888888887763
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.19 Score=40.09 Aligned_cols=131 Identities=10% Similarity=-0.010 Sum_probs=91.4
Q ss_pred CCCHHhHHHHHHHHHcCCChhhHHHHHhhccCC-CCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc-ccHHhHH
Q 042941 135 AVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDV-FPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGIC-YDVVSFS 212 (481)
Q Consensus 135 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~ 212 (481)
-|++..--.|..++.+.|+..+|...|++...+ +..|....-.+.++.. ..+++..|...++.+.+.+.. -+..+.-
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf-a~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF-AIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH-hhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 466666667888888889999999888875444 5667777777888888 788888888888888765321 1222344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 042941 213 CIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKS 268 (481)
Q Consensus 213 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 268 (481)
.+.+.+...|.+.+|..-|+..... -|+...-......+.+.|+.+++..-+..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 5667788888888888888888775 45555554455566677766655443333
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.026 Score=42.60 Aligned_cols=81 Identities=15% Similarity=0.155 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHH---------------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 345 NDTYIMLIKKFSRWRQFGNVFKVWNEIS---------------ENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
..++..++.++++.|+++....+++..= .....|+..+..+++.+|+..|++..|+++.+...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 4567778888888888888777776541 1234688999999999999999999999999998876
Q ss_pred -CCCCCHhHHHHHHHHH
Q 042941 410 -QLLPEPKTDELLQDWS 425 (481)
Q Consensus 410 -~~~p~~~~~~~l~~~~ 425 (481)
++..+..+|..|+.+.
T Consensus 82 Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWA 98 (126)
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 7777888888888864
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.64 Score=45.02 Aligned_cols=120 Identities=10% Similarity=0.125 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 042941 347 TYIMLIKKFSRWRQFGNVFKVWNEISE-NGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWS 425 (481)
Q Consensus 347 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 425 (481)
.|-.+..-....|.++.|+..--.+.+ .++-|....|..+.-+-+....+.-.-+.|-++....--|+.
T Consensus 1023 HFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~e~l~~a---------- 1092 (1189)
T KOG2041|consen 1023 HFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFEELDDA---------- 1092 (1189)
T ss_pred HHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCHH----------
Confidence 344444555666777777766555544 345566667776666555555555555555554433211221
Q ss_pred hhhhHHHHHHHHHhhcCccCCCCcccccccccc------------chhhccCccccchhcccc
Q 042941 426 YNKQFVERQIASLKAHQPQSGQNTRVISKKSDQ------------DREFLQQPETRRVVRHQG 476 (481)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~r~~~~~~~ 476 (481)
.+.+..+-+++.+.+..|.++.....=...... ++++......-+-+.+.-
T Consensus 1093 ~kq~ye~La~~iFsk~~p~d~~~~~vdc~~cg~~i~~~~~~c~ec~~kfP~CiasG~pIt~~~ 1155 (1189)
T KOG2041|consen 1093 EKQEYENLAFRIFSKNPPVDPNSAKVDCSVCGAKIDPYDLQCSECQTKFPVCIASGRPITDNI 1155 (1189)
T ss_pred HHHHHHHHHHHHhccCCCCCCCccceeeeecCCcCCccCCCChhhcCcCceeeccCCccccce
Confidence 123334466777777777776655543333333 566666666666555543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.016 Score=39.03 Aligned_cols=66 Identities=18% Similarity=0.223 Sum_probs=54.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 042941 353 KKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELL 421 (481)
Q Consensus 353 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 421 (481)
..|.+.+++++|.+.++.+...+.. +...|......+.+.|++++|.+.|++..+. .|+......+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHHHHHH
Confidence 5688999999999999999997543 6778888899999999999999999999874 4666554433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.14 Score=44.26 Aligned_cols=99 Identities=15% Similarity=0.168 Sum_probs=52.0
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---CChHHHHHHHHHHHHcCCCCChhhHHH
Q 042941 207 DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKG---RLVKDAISLMKSMEEKGVAPNVVTYNS 283 (481)
Q Consensus 207 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~ 283 (481)
|...|-.|...|...|+++.|..-|....+.. .++...+..+..++... .+-.++..+|+++...... |+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 55556666666666666666666665555542 23444444443333221 2234555666666554333 4555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 284 LIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 284 li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
+...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 555555666666666666666554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.082 Score=45.97 Aligned_cols=98 Identities=6% Similarity=-0.104 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHH
Q 042941 174 SFNIILNGWCNIIGSSREAERVWMEMSQRGICYD--VVSFSCIISCYSKARNLHKVLRLFDQMKRMG--IECDRKVYNAV 249 (481)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l 249 (481)
.|...+..+. +.|++++|...|+.+....+... ...+-.+...|...|++++|...|+.+.+.. -+.....+-.+
T Consensus 145 ~Y~~A~~l~~-~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 145 DYNAAIALVQ-DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3444444444 56777777777777766532211 2355566667777777777777777776542 01122333334
Q ss_pred HHHHHcCCChHHHHHHHHHHHHc
Q 042941 250 IHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 250 i~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
..++...|+.+.|..+|+.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55566667777777777766655
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.4 Score=40.55 Aligned_cols=129 Identities=14% Similarity=0.101 Sum_probs=60.2
Q ss_pred HHHHHHHHcCCChhhHHHHHhhccCCC-CCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHH-----
Q 042941 142 QGLLSALCRYKNVQDAEHLMFCNKDVF-PFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCII----- 215 (481)
Q Consensus 142 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll----- 215 (481)
+.++.++...+.+.-....+.++.... +.++.....+++.-. +.|+.+.|...|++..+..-..|..+.+.+.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~M-Q~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISM-QIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 344455555555555555555533322 334445555555555 5566666666665554433223333333222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 216 SCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 216 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
..|.-++++..|...+.++...+ +.|+...|.-.-+..-.|+..+|.+.++.|.+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 12333445555555555555443 223333333333333445555555555555554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.042 Score=47.76 Aligned_cols=88 Identities=13% Similarity=-0.018 Sum_probs=37.3
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCC--CHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCC---chHhHHHHHHHHHHhcCC
Q 042941 114 CAVHDVGRAINAFYAYKRFKFAV--GIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPF---NTKSFNIILNGWCNIIGS 188 (481)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 188 (481)
.+.|++++|+..|+.+.+.-... .+..+-.+..+|...|++++|...|..+....|. ....+..+...+. ..|+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~-~~g~ 232 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQ-DKGD 232 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHH-HcCC
Confidence 33444555555555444322110 0123334444445555555555555443322222 1222222333344 4555
Q ss_pred HHHHHHHHHHHHhc
Q 042941 189 SREAERVWMEMSQR 202 (481)
Q Consensus 189 ~~~a~~~~~~~~~~ 202 (481)
.++|...|+.+.+.
T Consensus 233 ~~~A~~~~~~vi~~ 246 (263)
T PRK10803 233 TAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.012 Score=40.35 Aligned_cols=64 Identities=19% Similarity=0.416 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 345 NDTYIMLIKKFSRWRQFGNVFKVWNEISEN----GN-GPD-RSSYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
..+|+.+...|...|++++|+..+++..+. |. .|+ ..++..+...|...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 357888999999999999999999988652 21 122 45788889999999999999999998654
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.34 Score=38.13 Aligned_cols=91 Identities=12% Similarity=-0.017 Sum_probs=72.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 042941 215 ISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKL 294 (481)
Q Consensus 215 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 294 (481)
.--+...|++++|..+|.-+...+ .-+..-+..|..++-..+++++|...|...-..+.. |...+-..-.+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCH
Confidence 344567899999999999888765 345666777888888889999999999887666543 666667778888999999
Q ss_pred HHHHHHHHHHHHC
Q 042941 295 DEARQAFDEMLQR 307 (481)
Q Consensus 295 ~~a~~~~~~m~~~ 307 (481)
+.|...|....++
T Consensus 122 ~~A~~~f~~a~~~ 134 (165)
T PRK15331 122 AKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999888774
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.26 Score=36.77 Aligned_cols=137 Identities=16% Similarity=0.177 Sum_probs=76.5
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhchhHHH
Q 042941 254 AKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIR---TYHAFLDIIRTGEEVF 330 (481)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~~~~~ 330 (481)
.-.|..++..++..+.... .+..-+|++|.-....-+-+-..++++.+-+- -|.. ....++.++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~C~NlKrVi~C~~~~---- 82 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISKCGNLKRVIECYAKR---- 82 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-S-THHHHHHHHHT----
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCchhhcchHHHHHHHHHh----
Confidence 3456677777777776654 35555666665555544444444444443221 1111 011222222221
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 331 GLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQ 410 (481)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 410 (481)
..+.......+.....+|+-++..++.+.+.+. -.+++...-.+..||.+.|+..++-+++++.-++|
T Consensus 83 -----------n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 83 -----------NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp -----------T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred -----------cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 233445666778888889999988888888753 34677888888899999999999999999988887
Q ss_pred CC
Q 042941 411 LL 412 (481)
Q Consensus 411 ~~ 412 (481)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 53
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.023 Score=38.27 Aligned_cols=57 Identities=9% Similarity=0.035 Sum_probs=42.7
Q ss_pred HHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 042941 73 AILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFK 133 (481)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 133 (481)
..+.+.++++.|.+.++.+... +|.++..+......+...|++++|...++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL----DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh----CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 4567778888888888888776 44456777777778888888888888888877654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.7 Score=41.56 Aligned_cols=101 Identities=15% Similarity=0.155 Sum_probs=48.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 042941 179 LNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRL 258 (481)
Q Consensus 179 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 258 (481)
+.-+. ..|+...|.++-.+.. -||..-|...+.+++..++|++..++... +-++..|..++.+|.+.|.
T Consensus 184 i~~li-~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 184 IRKLI-EMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHH-HCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 33344 4555555555444332 13555555555555555555555443221 1123555555555555555
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 042941 259 VKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQA 300 (481)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 300 (481)
..+|..++..+ .+..-+..|.+.|++.+|.+.
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 55555555441 113344555555555555444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.89 Score=41.46 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=24.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 277 NVVTYNSLIKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 277 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
+-..+.+++.++.-.|++++|.+..++|.+..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 44555677888888888888888888888764
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=1.3 Score=43.10 Aligned_cols=206 Identities=10% Similarity=0.019 Sum_probs=119.2
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcC-CCCCC-----cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGG-ETGPS-----LVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAV 136 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 136 (481)
|-+..|..+...-...-.++.|+..|-+...- |++.- ..+......=+. +--|.+++|.++|-++.+.+
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhh---
Confidence 67788888887776666777777766655431 22110 000111111122 22488999999987776543
Q ss_pred CHHhHHHHHHHHHcCCChhhHHHHHhhccCCC--CCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHH
Q 042941 137 GIEDFQGLLSALCRYKNVQDAEHLMFCNKDVF--PFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCI 214 (481)
Q Consensus 137 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 214 (481)
..+..+.+.|++-.+.+++..-.... ..-...|+.+...++ ....|++|.+.|..-... ...
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa-~~~~We~A~~yY~~~~~~---------e~~ 828 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFA-EMMEWEEAAKYYSYCGDT---------ENQ 828 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccch---------HhH
Confidence 35677788888888877776532221 122356777888887 778888888887654321 234
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 042941 215 ISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKL 294 (481)
Q Consensus 215 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 294 (481)
+.++.+..++++.+.+...+ +-+....-.+..++...|.-++|.+.|-+.-. | ...+.+|...++|
T Consensus 829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHH
Confidence 56666666666655554443 33444455566666666766666665543321 1 1344556666666
Q ss_pred HHHHHHHHH
Q 042941 295 DEARQAFDE 303 (481)
Q Consensus 295 ~~a~~~~~~ 303 (481)
.+|.++-+.
T Consensus 895 ~~avelaq~ 903 (1189)
T KOG2041|consen 895 GEAVELAQR 903 (1189)
T ss_pred HHHHHHHHh
Confidence 666655543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.066 Score=45.49 Aligned_cols=46 Identities=20% Similarity=0.370 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHhch-----hHH---HHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 042941 312 TIRTYHAFLDIIRTG-----EEV---FGLLESMRKMGCQPTNDTYIMLIKKFSR 357 (481)
Q Consensus 312 ~~~~~~~li~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 357 (481)
|-.+|...+..+... +.+ ...++.|.+.|+.-|..+|+.|+..+-+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK 119 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence 455555555554322 122 5666677777777777777777776644
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.11 Score=39.25 Aligned_cols=50 Identities=12% Similarity=0.243 Sum_probs=28.7
Q ss_pred CcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Q 042941 204 ICYDVVSFSCIISCYSKARNLHKVLRLFDQMKR-MGIECDRKVYNAVIHAL 253 (481)
Q Consensus 204 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~ 253 (481)
..|+..++.+++.+|+..+++..|+++++.+.+ .+++.+..+|..|+.-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 345666666666666666666666666665544 34555555565555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.98 Score=41.19 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYK 130 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~ 130 (481)
+.+...++-.|....+++.-+++.+.+.
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~ 168 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLE 168 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhh
Confidence 3344444444444444444444444444
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.63 Score=38.95 Aligned_cols=57 Identities=11% Similarity=0.036 Sum_probs=25.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 216 SCYSKARNLHKVLRLFDQMKRMGI--ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 216 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
..+...|++.+|.+.|+.+..... +--....-.++.++.+.|+++.|...+++..+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334455555555555555554310 111223334445555555555555555555444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.13 E-value=1 Score=40.90 Aligned_cols=156 Identities=14% Similarity=0.090 Sum_probs=94.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHcCCChHHHHHHHHHHHHcCCCCChhhHHH----------
Q 042941 216 SCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIH--ALAKGRLVKDAISLMKSMEEKGVAPNVVTYNS---------- 283 (481)
Q Consensus 216 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---------- 283 (481)
.++...|++++|...--...+.+ . ...+..+++ ++--.++.+.|...|++.+..+ |+-..-..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~--~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-A--TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-c--chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHH
Confidence 45566788888877777766653 2 223333333 3445677788888888777653 22222111
Q ss_pred ---HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 042941 284 ---LIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQ 360 (481)
Q Consensus 284 ---li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 360 (481)
--.-..+.|++..|.+.|.+.+... |+ +..|+...|........+.|+
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~id--P~---------------------------n~~~naklY~nra~v~~rLgr 302 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNID--PS---------------------------NKKTNAKLYGNRALVNIRLGR 302 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCC--cc---------------------------ccchhHHHHHHhHhhhcccCC
Confidence 1122346677777777777766532 33 236666777777777788888
Q ss_pred hhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 361 FGNVFKVWNEISENGNGPDRS---SYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
.++|+.-.+..... |.. .|..-..++.-.++|++|.+-|++..+.
T Consensus 303 l~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 303 LREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred chhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888877777663 322 2222233455667788888888776654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.12 E-value=1.5 Score=42.93 Aligned_cols=113 Identities=12% Similarity=0.062 Sum_probs=75.5
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042941 275 APNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKK 354 (481)
Q Consensus 275 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 354 (481)
.....+.+--+.-+...|+-.+|.++-.+.+ -||-..|..=+.+++..++..++.+...+.. ++.-|..++.+
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~ 753 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEA 753 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHH
Confidence 3445555666666777777777777766553 2677777777777777777777776665543 24457777788
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042941 355 FSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYY 403 (481)
Q Consensus 355 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 403 (481)
|.+.|+.++|...+.+.... . -...+|.+.|++.+|.++-
T Consensus 754 c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHH
Confidence 88888888888777654321 1 4567777788877777653
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.38 Score=46.09 Aligned_cols=165 Identities=8% Similarity=0.006 Sum_probs=85.5
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhcCC-CCCC--cccHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCCHHh
Q 042941 68 YHTMIAILGKVRKFDTAWALIDEMRGGE-TGPS--LVTKQTLLILIRRYCA----VHDVGRAINAFYAYKRFKFAVGIED 140 (481)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~--~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 140 (481)
...++..+.=.|+-+..++++....+.+ +.-. ....-.|...+..++. ..+.+.|.+++..+.+. .|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3345555555555555555555443321 1110 0012345555544443 34566777777777653 355444
Q ss_pred HHH-HHHHHHcCCChhhHHHHHhhccC---C-CCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHH
Q 042941 141 FQG-LLSALCRYKNVQDAEHLMFCNKD---V-FPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCII 215 (481)
Q Consensus 141 ~~~-ll~~~~~~~~~~~a~~~~~~~~~---~-~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 215 (481)
|.. -.+.+...|++++|++.|+.... . .+.....+--+.-.+. -..+|++|...|..+.+.+-- +...|.-+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~-~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~ 346 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM-FQHDWEEAAEYFLRLLKESKW-SKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH-HHchHHHHHHHHHHHHhcccc-HHHHHHHHH
Confidence 433 33555666777777777765221 1 1122333444555566 678888888888887765322 233333222
Q ss_pred -HHHHhcCCH-------HHHHHHHHHHHH
Q 042941 216 -SCYSKARNL-------HKVLRLFDQMKR 236 (481)
Q Consensus 216 -~~~~~~~~~-------~~a~~~~~~~~~ 236 (481)
.++...++. ++|.++|.+...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 233445555 777777777654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.091 Score=47.20 Aligned_cols=137 Identities=12% Similarity=-0.015 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHH----HcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 042941 244 KVYNAVIHALAKGRLVKDAISLMKSME----EKGVA-PNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHA 318 (481)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 318 (481)
..|..|.+.|.-.|+++.|+...+.-. +.|-+ .....+..+-.+++-.|+++.|.+.|+.-....+.....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r---- 271 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR---- 271 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch----
Confidence 456666666777788888887655432 22221 123456677788888899999988887643211100000
Q ss_pred HHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHhc
Q 042941 319 FLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISE----N-GNGPDRSSYTALIHALFLN 393 (481)
Q Consensus 319 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~ 393 (481)
.....+.-+|...|.-..++++|+..+++-.. . +..-....|.+|..+|...
T Consensus 272 -----------------------~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 272 -----------------------TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred -----------------------hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 00111222334444444455555555443221 0 1112345667777777777
Q ss_pred CCHHHHHHHHHHHH
Q 042941 394 GKLEEAHQYYMEMK 407 (481)
Q Consensus 394 g~~~~A~~~~~~m~ 407 (481)
|..++|+.+...-.
T Consensus 329 g~h~kAl~fae~hl 342 (639)
T KOG1130|consen 329 GEHRKALYFAELHL 342 (639)
T ss_pred hhHHHHHHHHHHHH
Confidence 77777777665543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.36 Score=45.60 Aligned_cols=168 Identities=13% Similarity=0.092 Sum_probs=87.3
Q ss_pred CCCHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHH
Q 042941 28 KVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLL 107 (481)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 107 (481)
.++...+..=..-++++.+.+.+....-.--+.+ +....+.++..+-+.|..+.|+.+...-.
T Consensus 260 ~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~--------------- 322 (443)
T PF04053_consen 260 ELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD--------------- 322 (443)
T ss_dssp E--HHHHHHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH---------------
T ss_pred EECHHHHHHHHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH---------------
Confidence 3444445444455566777765555422111111 24557777777777777777776654321
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcC
Q 042941 108 ILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIG 187 (481)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 187 (481)
.-.....+.|+++.|.++.+. ..+...|..|.+...+.|+++-|++.|.+..+ +..++-.|. -.|
T Consensus 323 ~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~-~~g 387 (443)
T PF04053_consen 323 HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYS-STG 387 (443)
T ss_dssp HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHH-HCT
T ss_pred HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHH-HhC
Confidence 122334556777777766532 23566777777777777777777777765542 444555555 567
Q ss_pred CHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 042941 188 SSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQ 233 (481)
Q Consensus 188 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 233 (481)
+.+...++.+.....|- ++....++.-.|+.++..+++..
T Consensus 388 ~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 388 DREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 76666666655554431 34444445555666666655543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.54 Score=35.19 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC
Q 042941 211 FSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGV 274 (481)
Q Consensus 211 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 274 (481)
....+.....+|+-+...++++.+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444455555555555555555555432 44555555555555555555555555555555544
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.11 Score=47.90 Aligned_cols=97 Identities=11% Similarity=0.085 Sum_probs=66.2
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHH
Q 042941 207 DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDR----KVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYN 282 (481)
Q Consensus 207 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 282 (481)
+...++.+..+|.+.|++++|+..|+...+.. |+. .+|..+..+|...|+.++|...+++..+.+ ...|.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels----n~~f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY----NLKFS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----chhHH
Confidence 46678888889999999999999999988763 443 358888899999999999999999988752 11222
Q ss_pred HHHH--HHHhcCCHHHHHHHHHHHHHCCC
Q 042941 283 SLIK--PLCKARKLDEARQAFDEMLQRGI 309 (481)
Q Consensus 283 ~li~--~~~~~g~~~~a~~~~~~m~~~~~ 309 (481)
.+.. .+....+.++..++++.+.+-|.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1111 11122333456666666666554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.042 Score=37.61 Aligned_cols=60 Identities=10% Similarity=0.195 Sum_probs=25.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHcCCChHHHHHHHHHH
Q 042941 210 SFSCIISCYSKARNLHKVLRLFDQMKRM----GI-ECD-RKVYNAVIHALAKGRLVKDAISLMKSM 269 (481)
Q Consensus 210 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (481)
+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+..+|...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444455555555555555444321 10 011 233444444445555555555554443
|
... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.25 Score=37.85 Aligned_cols=81 Identities=16% Similarity=0.122 Sum_probs=55.4
Q ss_pred HHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 042941 70 TMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALC 149 (481)
Q Consensus 70 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 149 (481)
.-.....+.|++++|.+.|+.+..+ .+..+.+..+...++.+|.+.++++.|...+++..+.........|...+.+++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3344445778888888888888776 333455577778888888888888888888888887654322334555555554
Q ss_pred cC
Q 042941 150 RY 151 (481)
Q Consensus 150 ~~ 151 (481)
..
T Consensus 94 ~~ 95 (142)
T PF13512_consen 94 YY 95 (142)
T ss_pred HH
Confidence 43
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.86 Score=43.70 Aligned_cols=179 Identities=13% Similarity=0.072 Sum_probs=117.7
Q ss_pred HHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCC--CCC-----chHhHHHHHHHHHHh---cCCHH
Q 042941 121 RAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDV--FPF-----NTKSFNIILNGWCNI---IGSSR 190 (481)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~-----~~~~~~~l~~~~~~~---~~~~~ 190 (481)
-..-+|.-+... ++| .+..++...+-.|+-+.+++.+...... +.. -...|+..+..++.. ....+
T Consensus 175 ~G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 175 FGFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 334455555542 233 3456888888888999998888764322 111 113466666666522 45778
Q ss_pred HHHHHHHHHHhcCCcccHHhHHHH-HHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 042941 191 EAERVWMEMSQRGICYDVVSFSCI-ISCYSKARNLHKVLRLFDQMKRMG---IECDRKVYNAVIHALAKGRLVKDAISLM 266 (481)
Q Consensus 191 ~a~~~~~~~~~~g~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~ 266 (481)
.|.++++.+... -|+...|... .+.+...|++++|++.|+...... -+.....+--+.-++.-..++++|...|
T Consensus 251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 899999999886 4666655433 356778899999999999755321 1223344555677788899999999999
Q ss_pred HHHHHcCCCCChhhHHHHHH-HHHhcCCH-------HHHHHHHHHHHH
Q 042941 267 KSMEEKGVAPNVVTYNSLIK-PLCKARKL-------DEARQAFDEMLQ 306 (481)
Q Consensus 267 ~~~~~~~~~~~~~~~~~li~-~~~~~g~~-------~~a~~~~~~m~~ 306 (481)
..+.+..- .+..+|..+.. ++...|+. ++|.++|.+...
T Consensus 329 ~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99987632 24445554444 34456777 899999998754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.2 Score=42.75 Aligned_cols=104 Identities=15% Similarity=0.299 Sum_probs=59.8
Q ss_pred cccHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChh
Q 042941 205 CYDVVSFSCIISCYSK-----ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVV 279 (481)
Q Consensus 205 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (481)
+-|..+|-..+..+.. .+.++-....++.|.+.|+..|..+|+.|++.+-+..-.. ..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP-----------------~n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP-----------------QN 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc-----------------HH
Confidence 4467777777666543 3556777777788888888888888888888765533211 11
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchh
Q 042941 280 TYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGE 327 (481)
Q Consensus 280 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 327 (481)
.+..+.-.|-+ +-+-++.++++|...|+.||-.+-..+++++++.+
T Consensus 127 vfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 127 VFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 11111111211 22345555556666666666555555555555544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.14 Score=47.16 Aligned_cols=66 Identities=9% Similarity=0.026 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 342 QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDR----SSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 342 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
+.+...++.+..+|...|++++|+..|++..+.. |+. ..|..+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4467788999999999999999999999988854 553 35889999999999999999999999875
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.38 E-value=1.5 Score=42.27 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=20.7
Q ss_pred hCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 042941 57 KQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEM 91 (481)
Q Consensus 57 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 91 (481)
++.|-.|+.. .+...++-.|++.+|-++|.+-
T Consensus 627 k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 627 KKRGETPNDL---LLADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HhcCCCchHH---HHHHHHHhhhhHHHHHHHHHHc
Confidence 4566556654 3445566677888888777664
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.81 Score=36.06 Aligned_cols=86 Identities=12% Similarity=0.014 Sum_probs=62.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 042941 185 IIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAIS 264 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 264 (481)
..|++++|..+|.-+.-.+.. +..-|..|..++-..+++++|...|......+ .-|+..+-....++...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHH
Confidence 578888888888877665433 44445566667777888888888887766654 3455556667778888888888888
Q ss_pred HHHHHHHc
Q 042941 265 LMKSMEEK 272 (481)
Q Consensus 265 ~~~~~~~~ 272 (481)
.|+...+.
T Consensus 127 ~f~~a~~~ 134 (165)
T PRK15331 127 CFELVNER 134 (165)
T ss_pred HHHHHHhC
Confidence 88887763
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.25 Score=42.85 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhHHHH
Q 042941 346 DTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKE-----KQLLPEPKTDEL 420 (481)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~ 420 (481)
.++..++..+..+|+++.+.+.++++..... -+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|.+.+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 4677889999999999999999999998754 4888999999999999999999999998866 489999988777
Q ss_pred HHHHH
Q 042941 421 LQDWS 425 (481)
Q Consensus 421 l~~~~ 425 (481)
.....
T Consensus 233 y~~~~ 237 (280)
T COG3629 233 YEEIL 237 (280)
T ss_pred HHHHh
Confidence 66653
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.16 E-value=1.3 Score=38.51 Aligned_cols=145 Identities=10% Similarity=-0.025 Sum_probs=79.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchH-hHHHHHHHHHHhcCCH
Q 042941 111 RRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTK-SFNIILNGWCNIIGSS 189 (481)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~ 189 (481)
......|++.+|...|......... +...-..+..+|...|+.+.|..++..+......+.. ....-+..+. +....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~-qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE-QAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH-HHhcC
Confidence 3455667777777777777654322 3444556777777777777777777776543221111 1112233333 33333
Q ss_pred HHHHHHHHHHHhcCCcc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCChH
Q 042941 190 REAERVWMEMSQRGICY-DVVSFSCIISCYSKARNLHKVLRLFDQMKRMG-IECDRKVYNAVIHALAKGRLVK 260 (481)
Q Consensus 190 ~~a~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~ 260 (481)
.+...+-.+.-.. | |...-..+...+...|+.+.|.+.+-.+.+.+ -.-|...-..++..+.-.|.-+
T Consensus 220 ~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 220 PEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 3333333333332 3 44444556667777777777777666655432 1234556666777766666333
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.15 E-value=1.7 Score=36.59 Aligned_cols=208 Identities=8% Similarity=0.026 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHH
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGL 144 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 144 (481)
...|.....+|....++++|...+.+..+- ..-+ ...|+. ....+.|.-+.+++.+. .--+..|+..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnn---rslfhA-------AKayEqaamLake~~kl--sEvvdl~eKA 97 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENN---RSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKA 97 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhc---ccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHH
Confidence 556777777888888999888877766531 0001 222221 12345555555555542 1223446667
Q ss_pred HHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc---C--CcccHHhHHHHHHHHH
Q 042941 145 LSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR---G--ICYDVVSFSCIISCYS 219 (481)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~---g--~~~~~~~~~~ll~~~~ 219 (481)
...|..+|..+.|-..+++... .. +..++++|+++|.+.... + ...-...+..+-+.+.
T Consensus 98 s~lY~E~GspdtAAmaleKAak---------------~l-env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 98 SELYVECGSPDTAAMALEKAAK---------------AL-ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV 161 (308)
T ss_pred HHHHHHhCCcchHHHHHHHHHH---------------Hh-hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence 7788888888777666655221 12 455666666666653321 1 0112233455566677
Q ss_pred hcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHhc
Q 042941 220 KARNLHKVLRLFDQMKRM----GIECD-RKVYNAVIHALAKGRLVKDAISLMKSMEEKG---VAPNVVTYNSLIKPLCKA 291 (481)
Q Consensus 220 ~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~ 291 (481)
+...+++|-..+..-... .--++ -..|...|-.+.-..++..|.+.++.--+.+ -.-+..+...|+.+| ..
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~ 240 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DE 240 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-cc
Confidence 777777776655443211 11122 2345556666677778889999988754432 223566777788776 45
Q ss_pred CCHHHHHHHHH
Q 042941 292 RKLDEARQAFD 302 (481)
Q Consensus 292 g~~~~a~~~~~ 302 (481)
|+.+++..+..
T Consensus 241 gD~E~~~kvl~ 251 (308)
T KOG1585|consen 241 GDIEEIKKVLS 251 (308)
T ss_pred CCHHHHHHHHc
Confidence 77777766654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=1.6 Score=40.71 Aligned_cols=162 Identities=10% Similarity=-0.024 Sum_probs=94.7
Q ss_pred HHH--HHHHHHHhcc--C---ChhHHHHHHHHHhc-CCCCCCcccHHHHHHHHHHHHh---------cCCHHHHHHHHHH
Q 042941 66 REY--HTMIAILGKV--R---KFDTAWALIDEMRG-GETGPSLVTKQTLLILIRRYCA---------VHDVGRAINAFYA 128 (481)
Q Consensus 66 ~~~--~~li~~~~~~--g---~~~~a~~~~~~~~~-~~~~p~~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~ 128 (481)
..| ..++.+.... + ..+.|..+|.+... ..+.|+ -...|..+..++.. ..+..+|.+..+.
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~--~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r 329 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTL--KTECYCLLAECHMSLALHGKSELELAAQKALELLDY 329 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcc--cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 556 5566655442 2 34578888888872 223444 24455544433322 2334566677777
Q ss_pred HhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc-cc
Q 042941 129 YKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGIC-YD 207 (481)
Q Consensus 129 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~-~~ 207 (481)
..+.+ +-|+.+...+..+..-.++++.|..+|++.....|....+|........ -.|+.++|.+.+++..+..+. .-
T Consensus 330 Aveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~-~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 330 VSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHF-HNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred HHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH-HcCCHHHHHHHHHHHhccCchhhH
Confidence 77665 3467777777776777777888888888765544444555554444444 568888888888876554221 22
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHH
Q 042941 208 VVSFSCIISCYSKARNLHKVLRLFD 232 (481)
Q Consensus 208 ~~~~~~ll~~~~~~~~~~~a~~~~~ 232 (481)
.......+..|+..+ .+++.++|-
T Consensus 408 ~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 408 AVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 233344444565554 566666654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.07 E-value=1.5 Score=41.49 Aligned_cols=131 Identities=14% Similarity=0.060 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHH
Q 042941 104 QTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWC 183 (481)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 183 (481)
...+.+++-+-+.|.++.|+++.. |+. .-.....+.|+++.|.++...+. +...|..|.....
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~~~a~~~~-----~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIALEIAKELD-----DPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCCS-----THHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHHHHHHhcC-----cHHHHHHHHHHHH
Confidence 345556666666666666666542 221 23344556666666666554332 4556666666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 042941 184 NIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAI 263 (481)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 263 (481)
..|+++-|+..|.+..+ |..|+-.|.-.|+.+...++.+.....|. ++....++.-.|+.++..
T Consensus 359 -~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 359 -RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECV 422 (443)
T ss_dssp -HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred -HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHH
Confidence 66666666666655432 34444555666666666666655555441 333334444445555555
Q ss_pred HHHH
Q 042941 264 SLMK 267 (481)
Q Consensus 264 ~~~~ 267 (481)
+++.
T Consensus 423 ~lL~ 426 (443)
T PF04053_consen 423 DLLI 426 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.06 E-value=1.9 Score=36.71 Aligned_cols=83 Identities=14% Similarity=0.109 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHH
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGL 144 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 144 (481)
...|+..+ .-.+.|++++|.+.|+.+..+ .+-++.+..+...++.++-+.++.+.|+..+++..+.-.......|..-
T Consensus 35 ~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~-~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 35 SELYNEGL-TELQKGNYEEAIKYFEALDSR-HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HHHHHHHH-HHHhcCCHHHHHHHHHHHHHc-CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 33444444 445789999999999999865 3334555777778888888999999999999888865333222344455
Q ss_pred HHHHH
Q 042941 145 LSALC 149 (481)
Q Consensus 145 l~~~~ 149 (481)
|.+++
T Consensus 113 lkgLs 117 (254)
T COG4105 113 LKGLS 117 (254)
T ss_pred HHHHH
Confidence 55544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.03 E-value=1.8 Score=43.15 Aligned_cols=80 Identities=14% Similarity=0.228 Sum_probs=39.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 042941 218 YSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEA 297 (481)
Q Consensus 218 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 297 (481)
+.+.|++++|...|-+-... +.|. .+|.-|....+...-..+++.+.+.|+. +...-+.|+.+|.+.++.++-
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKL 450 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHH
Confidence 34455555555555443322 1221 2344444444555555555555555554 444445555566666555555
Q ss_pred HHHHHHH
Q 042941 298 RQAFDEM 304 (481)
Q Consensus 298 ~~~~~~m 304 (481)
.++.+..
T Consensus 451 ~efI~~~ 457 (933)
T KOG2114|consen 451 TEFISKC 457 (933)
T ss_pred HHHHhcC
Confidence 5544443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.01 E-value=4.1 Score=40.22 Aligned_cols=126 Identities=10% Similarity=-0.028 Sum_probs=73.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCC---hhhHHHHHhhccCCCCCchHhHHHHHHHHHH
Q 042941 108 ILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKN---VQDAEHLMFCNKDVFPFNTKSFNIILNGWCN 184 (481)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 184 (481)
.+|..+...+.+..|+++-..+...-..- ...|.....-+.+..+ -+-+..+-+++.... ....+|..+..-..
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay- 518 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAY- 518 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHH-
Confidence 35666777788889998888776432222 4566666666665532 222333334444433 34455666665555
Q ss_pred hcCCHHHHHHHHHHHHhcCCc----ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 185 IIGSSREAERVWMEMSQRGIC----YDVVSFSCIISCYSKARNLHKVLRLFDQMKR 236 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 236 (481)
..|+.+.|..+++.=...+.. .+..-+...+.-+...|+.+-...++-.+.+
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 689999998888654333211 1222344555666777777777766666654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.00 E-value=1.2 Score=36.27 Aligned_cols=99 Identities=14% Similarity=0.041 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-HHhHHH
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG-IEDFQG 143 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ 143 (481)
...+..+...|.+.|+.+.|.+.|.++.+....|... ...+..+|+...-.+++..+...+.+....--.+. ...-+.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~-id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHK-IDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 4678889999999999999999999998875555422 56778889999999999999988887764322222 211111
Q ss_pred --H--HHHHHcCCChhhHHHHHhhc
Q 042941 144 --L--LSALCRYKNVQDAEHLMFCN 164 (481)
Q Consensus 144 --l--l~~~~~~~~~~~a~~~~~~~ 164 (481)
. .-.+...+++..|-+.|-..
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHcc
Confidence 1 11234457788877777554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.90 E-value=3.1 Score=38.39 Aligned_cols=144 Identities=17% Similarity=0.268 Sum_probs=106.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhchhHH--HHHHHHHHHcCCCCCHHHH-HHHHH
Q 042941 278 VVTYNSLIKPLCKARKLDEARQAFDEMLQRG-ISPTIRTYHAFLDIIRTGEEV--FGLLESMRKMGCQPTNDTY-IMLIK 353 (481)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~l~~ 353 (481)
...|+..+.+..+...++.|..+|-++.+.+ +.+++..+++++..++..+.+ ..+++.=... -||...| .-.+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 3456777888888888999999999999988 678889999999998887655 5666543332 3444444 44566
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 042941 354 KFSRWRQFGNVFKVWNEISENGNGPD--RSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSY 426 (481)
Q Consensus 354 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 426 (481)
-+.+.++-+.|..+|+..... +..+ ...|..+|.-=..-|+...+..+=++|.+ +.|...+.......++
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 677889999999999955442 1112 45899999988899999999998888887 5677777666665543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.72 Score=35.41 Aligned_cols=76 Identities=12% Similarity=0.076 Sum_probs=45.5
Q ss_pred HHHHcCCChhhHHHHHhhccCCCCCch---HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcC
Q 042941 146 SALCRYKNVQDAEHLMFCNKDVFPFNT---KSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKAR 222 (481)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~ 222 (481)
....+.|++++|.+.|+.+....|.+. ..--.++.+|. +.+++++|...+++..+..+...-.-|...+.+++...
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy-~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYY-KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 334455667777766666655544333 33445666677 77777777777777777655434445555555555443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.57 E-value=1.9 Score=34.36 Aligned_cols=133 Identities=14% Similarity=0.165 Sum_probs=72.5
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-hhHHHHHHHHHHHc-CC
Q 042941 264 SLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRT-GEEVFGLLESMRKM-GC 341 (481)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~~~~~~~~~~~~~~-~~ 341 (481)
+++..+.+.+++|+...+..++..+.+.|++.. +.++...++-||.......+-.+.. ...+.++--.|.+. +
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 444555566666677777777777777666443 3344444555555544444333322 22222222222221 1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 342 QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 342 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
..+..+++.+...|++-+|.++.+..... +......++.+..+.++...=..+|+-..++
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 14556777788888888888887765332 1122345677777777766655555555443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.88 Score=38.98 Aligned_cols=102 Identities=16% Similarity=0.042 Sum_probs=57.2
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CCC-HHhHHHH
Q 042941 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKF-AVG-IEDFQGL 144 (481)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~-~~~~~~l 144 (481)
.|+.-+..+ +.|++..|...|....+... -+..++.++-.|...+...|+++.|..+|..+.+.-. .|. +..+-.|
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP-~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYP-NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCC-CCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 455555544 44556667766666665422 2334455666666666666666666666666654221 111 2445555
Q ss_pred HHHHHcCCChhhHHHHHhhccCCCCC
Q 042941 145 LSALCRYKNVQDAEHLMFCNKDVFPF 170 (481)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~~~~~ 170 (481)
..+..+.|+.++|...|+++...+|-
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 55666666666666666665544443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.5 Score=41.10 Aligned_cols=77 Identities=13% Similarity=0.062 Sum_probs=46.3
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCCHHhH
Q 042941 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKR-----FKFAVGIEDF 141 (481)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 141 (481)
++..++..+...|+++.+.+.++++... ++.+...|..++.+|.+.|+...|+..|+.+.+ .|+.|.+.+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~----dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL----DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc----CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 4455555666666666666666666665 555566666666666666666666666665543 4555555554
Q ss_pred HHHHHH
Q 042941 142 QGLLSA 147 (481)
Q Consensus 142 ~~ll~~ 147 (481)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 444333
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.47 E-value=2.7 Score=35.79 Aligned_cols=67 Identities=22% Similarity=0.240 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHh-hcCHHHHHHHHHHhhhCCCCCC-CHHHHHHHHHHHhccCChhHHHHHHHHHhcC
Q 042941 28 KVSSELVSEVLSWV-RNDWEAAFTFFLWAGKQSGYAH-STREYHTMIAILGKVRKFDTAWALIDEMRGG 94 (481)
Q Consensus 28 ~~~~~~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 94 (481)
.|-...|+..+..+ .+++++|...|+.+..+++..| ...+--.++.++-+.++++.|+...++..+.
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 46677899999998 5899999999999986665444 6777778888889999999999999998775
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.46 E-value=2 Score=34.09 Aligned_cols=139 Identities=13% Similarity=0.045 Sum_probs=94.9
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHH-hHH
Q 042941 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIE-DFQ 142 (481)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~ 142 (481)
+...|...+. +++.+..++|+.-|..+.+.|...-+ .-............|+-..|...|++.-.....|-+. ...
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~Yp--vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A 134 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYP--VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA 134 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcch--HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH
Confidence 4455555554 45677889999999999888765442 3344555666778899999999999988655445443 222
Q ss_pred H--HHHHHHcCCChhhHHHHHhhccC-CCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc
Q 042941 143 G--LLSALCRYKNVQDAEHLMFCNKD-VFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICY 206 (481)
Q Consensus 143 ~--ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~ 206 (481)
. ...++...|.+++.....+.+.. +.+.....-..|.-+-. +.|++..|.+.|..+......|
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~-kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAY-KAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHH-hccchHHHHHHHHHHHccccCc
Confidence 2 23456788999998888877643 33444445556666666 8999999999999887753333
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.41 E-value=1.8 Score=33.54 Aligned_cols=43 Identities=9% Similarity=0.111 Sum_probs=22.0
Q ss_pred HHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhc
Q 042941 70 TMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAV 116 (481)
Q Consensus 70 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~ 116 (481)
.++..+...+.+.....+++.+...+. .++..++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~----~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS----ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc----cchhHHHHHHHHHHHH
Confidence 445555555555555555555555431 2244555555555543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.37 E-value=3.5 Score=36.56 Aligned_cols=225 Identities=12% Similarity=0.049 Sum_probs=119.6
Q ss_pred hccCChhHHHHHHHHHhcCCCCCCcccH-----HHHHHHHHHHHhcC-CHHHHHHHHHHHhhc--------CCCCCH---
Q 042941 76 GKVRKFDTAWALIDEMRGGETGPSLVTK-----QTLLILIRRYCAVH-DVGRAINAFYAYKRF--------KFAVGI--- 138 (481)
Q Consensus 76 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~-----~~~~~li~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~--- 138 (481)
.+.|+++.|..++.+........++... ..|+. .......+ +++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~-G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNI-GKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHH-HHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 4678888888888887664211121111 11222 22233445 777777666655432 122332
Q ss_pred --HhHHHHHHHHHcCCChhh---HHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHH
Q 042941 139 --EDFQGLLSALCRYKNVQD---AEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSC 213 (481)
Q Consensus 139 --~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 213 (481)
.++..++.+|...+..+. |..+++.+....+..+.++-.-+..+. +.++.+.+.+.+.+|...-.. ....+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~-~~~~~~~~~~~L~~mi~~~~~-~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILL-KSFDEEEYEEILMRMIRSVDH-SESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHh-ccCChhHHHHHHHHHHHhccc-ccchHHH
Confidence 346667788888776554 445555555555555666767777777 688899999999999876221 2334444
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHHcCCCCCHH-HH-HHHHHH---HHcCCC------hHHHHHHHHHHHHc-CCCCCh
Q 042941 214 IISCY---SKARNLHKVLRLFDQMKRMGIECDRK-VY-NAVIHA---LAKGRL------VKDAISLMKSMEEK-GVAPNV 278 (481)
Q Consensus 214 ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~-~~li~~---~~~~g~------~~~a~~~~~~~~~~-~~~~~~ 278 (481)
++..+ .... ...+...+..+....+.|... .. ..++.. ..+.++ .+....+++.+.+. +.+.+.
T Consensus 161 ~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 161 ILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 44443 3333 345555555555444454443 11 111111 112111 44444555543322 222233
Q ss_pred hhHHHH-------HHHHHhcCCHHHHHHHHHHH
Q 042941 279 VTYNSL-------IKPLCKARKLDEARQAFDEM 304 (481)
Q Consensus 279 ~~~~~l-------i~~~~~~g~~~~a~~~~~~m 304 (481)
.+-.++ ...+.+.++++.|.+.|+-.
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 332222 22345678999999988753
|
It is also involved in sporulation []. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.005 Score=34.10 Aligned_cols=33 Identities=3% Similarity=0.033 Sum_probs=29.2
Q ss_pred HHHHhhcCccCCCCccccccccccchhhccCcc
Q 042941 435 IASLKAHQPQSGQNTRVISKKSDQDREFLQQPE 467 (481)
Q Consensus 435 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 467 (481)
.+...+.+|+++..+..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 456788899999999999999999999999864
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.31 E-value=2.1 Score=42.65 Aligned_cols=176 Identities=11% Similarity=0.133 Sum_probs=91.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHH----HHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHH
Q 042941 106 LLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLL----SALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNG 181 (481)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 181 (481)
...-+..+++...++.|+.+.+.- + .+..+...++ +-+.+.|++++|...|-+......|. .++.-
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s-----~Vi~k 406 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS-----EVIKK 406 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-----HHHHH
Confidence 334455555566666666655431 2 2333333333 33446677777777765533333322 23444
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHH
Q 042941 182 WCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKD 261 (481)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (481)
|. ...+...-..+++.+.+.|+. +...-..|+.+|.+.++.++..++.+... .|.. ..-....+..+.+.+-.++
T Consensus 407 fL-daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 407 FL-DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred hc-CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 45 556666666677777777766 44455667777777777777666655443 2211 1123344555555555555
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 262 AISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEM 304 (481)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 304 (481)
|..+-..... +......+ +-..+++++|++++..+
T Consensus 482 a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 5544433322 22222222 23346666666666554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.29 E-value=1.3 Score=37.90 Aligned_cols=101 Identities=14% Similarity=0.038 Sum_probs=82.0
Q ss_pred HHHHHHHHHHh-hcCHHHHHHHHHHhhhCC-CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHH
Q 042941 31 SELVSEVLSWV-RNDWEAAFTFFLWAGKQS-GYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLI 108 (481)
Q Consensus 31 ~~~~~~~l~~~-~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~ 108 (481)
...|...+..+ .+++..|..-|....+.. +-.-...++-.|...+...|++++|..+|..+.+.. +-++-.+.++..
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-P~s~KApdallK 220 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-PKSPKAPDALLK 220 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-CCCCCChHHHHH
Confidence 44789888887 578899998888887554 333456788899999999999999999999987752 223334688999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhc
Q 042941 109 LIRRYCAVHDVGRAINAFYAYKRF 132 (481)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~~~~ 132 (481)
|.....+.|+.++|..+|+.+.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999999999999999999999874
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.29 E-value=1.3 Score=45.94 Aligned_cols=27 Identities=15% Similarity=0.011 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHhhcCHHHHHHHHHHhh
Q 042941 30 SSELVSEVLSWVRNDWEAAFTFFLWAG 56 (481)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~a~~~~~~~~ 56 (481)
+-.....|....+.++.+=+-+++.+.
T Consensus 852 Dl~Lal~VAq~SqkDPkEyLP~L~el~ 878 (1265)
T KOG1920|consen 852 DLDLALLVAQKSQKDPKEYLPFLNELK 878 (1265)
T ss_pred chHHHHHHHHHhccChHHHHHHHHHHh
Confidence 445555555556677777666666664
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.27 E-value=4.5 Score=37.48 Aligned_cols=119 Identities=15% Similarity=0.204 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHhch------hHHHHHHHHHHHcCCCCCHH----HHHHHHHH--HHh
Q 042941 294 LDEARQAFDEMLQRGISPTIRTYHAFL----DIIRTG------EEVFGLLESMRKMGCQPTND----TYIMLIKK--FSR 357 (481)
Q Consensus 294 ~~~a~~~~~~m~~~~~~p~~~~~~~li----~~~~~~------~~~~~~~~~~~~~~~~~~~~----~~~~l~~~--~~~ 357 (481)
-++|+++++...+-.. -|...-+.+. .+|.+. .+...+-+.+.+.|++|-.. .-|.|.++ +..
T Consensus 396 dekalnLLk~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 6667777776665421 1222222222 233322 22355555666777766432 33334332 456
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 042941 358 WRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDEL 420 (481)
Q Consensus 358 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 420 (481)
+|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|..++.. ++|+..+++.
T Consensus 475 qgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ds 530 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDS 530 (549)
T ss_pred cccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHH
Confidence 7888888766666655 568888888888888888888899888876 4566666653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.25 E-value=3.8 Score=36.52 Aligned_cols=149 Identities=19% Similarity=0.267 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHh--c----CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHhch-----
Q 042941 261 DAISLMKSMEEKGVAPNVVTYNSLIKPLCK--A----RKLDEARQAFDEMLQRGI---SPTIRTYHAFLDIIRTG----- 326 (481)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~----g~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~----- 326 (481)
+...+++.|.+.|.+-+..+|-+....... . .....|..+|+.|++... .++...+..++..-...
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~l~ 159 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEELA 159 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHHHH
Confidence 344555666666666555444432222211 1 124456666666666532 24445555555442111
Q ss_pred hHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----HH
Q 042941 327 EEVFGLLESMRKMGCQPTND--TYIMLIKKFSRWRQ--FGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKL----EE 398 (481)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~ 398 (481)
+.+..+++.+.+.|+..+-. ....++..+..... ...+.++++.+.+.|+++....|..+.-...-.+.. +.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~~~ 239 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIVEE 239 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHHHHH
Confidence 23355666666666554332 23333333222222 457788888888888888887777665443333333 33
Q ss_pred HHHHHHHHHHC
Q 042941 399 AHQYYMEMKEK 409 (481)
Q Consensus 399 A~~~~~~m~~~ 409 (481)
..++.+.+.+.
T Consensus 240 i~ev~~~L~~~ 250 (297)
T PF13170_consen 240 IKEVIDELKEQ 250 (297)
T ss_pred HHHHHHHHhhC
Confidence 34444444443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.24 E-value=2 Score=39.01 Aligned_cols=90 Identities=10% Similarity=0.025 Sum_probs=46.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc-----CCcc---------cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 042941 181 GWCNIIGSSREAERVWMEMSQR-----GICY---------DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVY 246 (481)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~~~~~-----g~~~---------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 246 (481)
.|. +.|++..|..-|++.... +..+ -..++..+.-++.+.+++..|++.-+..+..+ ++|+...
T Consensus 217 ~~f-K~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 217 VLF-KEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred HHH-hhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 455 677777777777664432 1110 11233444445555555555555555555543 3444444
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 247 NAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 247 ~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
---..+|...|+++.|...|+.+.+.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 44455555555555555555555553
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.14 Score=30.29 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 042941 105 TLLILIRRYCAVHDVGRAINAFYAYKRF 132 (481)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~ 132 (481)
++..+...|...|++++|+++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444444555555555555555555543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.89 E-value=6.8 Score=38.10 Aligned_cols=95 Identities=11% Similarity=-0.015 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCC--------cccHHHHHHHHHHHHhcCCH--HHHHHHHHHHhh
Q 042941 62 AHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPS--------LVTKQTLLILIRRYCAVHDV--GRAINAFYAYKR 131 (481)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--------~~~~~~~~~li~~~~~~~~~--~~a~~~~~~~~~ 131 (481)
.+....+.+-+..|...|.+++|..+-- .|+..+ ....--++..=.+|.+..+. -+.+.-++++.+
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iac----lgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~ 628 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIAC----LGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKK 628 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccc----cceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444555555666666776666644311 011000 00011222233344444332 233333455666
Q ss_pred cCCCCCHHhHHHHHHHHHcCCChhhHHHHHhh
Q 042941 132 FKFAVGIEDFQGLLSALCRYKNVQDAEHLMFC 163 (481)
Q Consensus 132 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 163 (481)
.|-.|+... +...++-.|++.+|-++|.+
T Consensus 629 rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 629 RGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred cCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 665566543 34455666777777777753
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.74 E-value=4.3 Score=35.38 Aligned_cols=142 Identities=11% Similarity=0.073 Sum_probs=78.0
Q ss_pred HHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHH
Q 042941 147 ALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHK 226 (481)
Q Consensus 147 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~ 226 (481)
.....|++.+|..+|.......+.+...--.+..+|. ..|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l-~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLL-AAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHH-HcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4556677777777776654444445566666777777 777777777777776654222222222223333444444333
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcC
Q 042941 227 VLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK--GVAPNVVTYNSLIKPLCKAR 292 (481)
Q Consensus 227 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g 292 (481)
...+-...-.. +-|...-..+...+...|+.+.|.+.+-.+.+. |.. |...-..++..+.-.|
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 33333333321 235555556666777777777777666555443 222 4444455555555544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.66 E-value=5.6 Score=36.41 Aligned_cols=252 Identities=12% Similarity=0.008 Sum_probs=137.6
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHH
Q 042941 45 WEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAIN 124 (481)
Q Consensus 45 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~ 124 (481)
+..|+..+....... +.+..-|..-...+...|++++|.-=.+.-.+. +|.. ...+...-+.+...++..+|..
T Consensus 65 Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~--~k~~~r~~~c~~a~~~~i~A~~ 138 (486)
T KOG0550|consen 65 YGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGF--SKGQLREGQCHLALSDLIEAEE 138 (486)
T ss_pred HHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCc--cccccchhhhhhhhHHHHHHHH
Confidence 345555555554322 234555666666666666666666555443332 2221 2233333333333344444433
Q ss_pred HHHH------------H---hhcCC-CCCHHhHHHH-HHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcC
Q 042941 125 AFYA------------Y---KRFKF-AVGIEDFQGL-LSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIG 187 (481)
Q Consensus 125 ~~~~------------~---~~~~~-~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 187 (481)
.++. . ..... +|.-.++..+ ..++.-.++.++|.++--.+....+.+......--.++. -.+
T Consensus 139 ~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~y-y~~ 217 (486)
T KOG0550|consen 139 KLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLY-YND 217 (486)
T ss_pred HhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccc-ccc
Confidence 3321 1 11111 1222333322 245667778887777665433322222222222222333 467
Q ss_pred CHHHHHHHHHHHHhcCCcccHHhH-------------HHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHH
Q 042941 188 SSREAERVWMEMSQRGICYDVVSF-------------SCIISCYSKARNLHKVLRLFDQMKRMG---IECDRKVYNAVIH 251 (481)
Q Consensus 188 ~~~~a~~~~~~~~~~g~~~~~~~~-------------~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~ 251 (481)
+.+.+...|++-...+ |+...- ..=.+-..+.|++..|.+.|.+.+..+ ..|+...|.....
T Consensus 218 ~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~ 295 (486)
T KOG0550|consen 218 NADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRAL 295 (486)
T ss_pred chHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHh
Confidence 7888888888777653 333221 111233567889999999999888653 4566777877888
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCChhhHHHH--HHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 252 ALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSL--IKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
+..+.|+.++|+.--+...+.. +......+ ..++...++|++|.+-|++..+..
T Consensus 296 v~~rLgrl~eaisdc~~Al~iD---~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 296 VNIRLGRLREAISDCNEALKID---SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hhcccCCchhhhhhhhhhhhcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8889999999998888887651 22222222 234555688888888888876653
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.40 E-value=6 Score=35.96 Aligned_cols=294 Identities=14% Similarity=0.100 Sum_probs=164.6
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHhhcCCCCCHHhHHHHHH--HHHcCCChhhHHHHHhhccCCCCCchHhHHHHHH
Q 042941 105 TLLILIRRYCA--VHDVGRAINAFYAYKRFKFAVGIEDFQGLLS--ALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILN 180 (481)
Q Consensus 105 ~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 180 (481)
-|..|-.+++. .|+-..|.++-.+..+. +.-|...+..++. +-.-.|+++.|.+-|+.|.........-..-|.-
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyl 162 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYL 162 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHH
Confidence 34444444433 45666666665554321 2234444444443 3345688888888888776521111111122222
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHH---
Q 042941 181 GWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMG-IECDRK--VYNAVIHALA--- 254 (481)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~li~~~~--- 254 (481)
..- +.|..+.|.++-+.....-.. -...+...+...+..|+++.|+++++.-.... +.++.. .-..|+.+-.
T Consensus 163 eAq-r~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 163 EAQ-RLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHH-hcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 222 677888777777766554222 23456677788888888888888887765532 333332 1122332211
Q ss_pred cCCChHHHHHHHHHHHHcCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHH-HHH
Q 042941 255 KGRLVKDAISLMKSMEEKGVAPNVVTYN-SLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEV-FGL 332 (481)
Q Consensus 255 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~-~~~ 332 (481)
-..+...|...-.+..+ +.||...-. .-..++.+.|+..++-.+++.+.+....|+. .... .+.+.++. ..-
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~lY--~~ar~gdta~dR 314 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--ALLY--VRARSGDTALDR 314 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HHHH--HHhcCCCcHHHH
Confidence 12344555555444444 344443322 2345777888888888888888887655543 2222 22233322 222
Q ss_pred HHHHHHc-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHC
Q 042941 333 LESMRKM-GCQP-TNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALF-LNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 333 ~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~ 409 (481)
++...+. .++| +......+..+-...|++..|..--+.... ..|....|..|...-. ..|+-+++...+-+....
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 2222211 1233 455666778888889999998887777665 3577778877766543 459999999888887665
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.88 Score=32.30 Aligned_cols=60 Identities=13% Similarity=0.067 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHH
Q 042941 121 RAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILN 180 (481)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 180 (481)
+..+.++.+...++.|++....+.+++|-+.+++..|.++|+.++..+.+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 455556666666677777777777777777777777777777665544433335555444
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.24 Score=27.68 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 382 SYTALIHALFLNGKLEEAHQYYMEMK 407 (481)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 407 (481)
+|..|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888999999999999998854
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.27 Score=29.05 Aligned_cols=40 Identities=10% Similarity=0.023 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 042941 66 REYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLIL 109 (481)
Q Consensus 66 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~l 109 (481)
.++..+...|.+.|++++|.++|++..+. ++.++..+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~----~P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL----DPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CcCCHHHHHHh
Confidence 35666777777788888888888877776 33345555544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.18 E-value=1.4 Score=40.07 Aligned_cols=61 Identities=13% Similarity=0.030 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 042941 141 FQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR 202 (481)
Q Consensus 141 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 202 (481)
++.+.-++.+.+++..|++.-+......++|......-..++. ..|+++.|...|+.+.+.
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l-~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALL-ALGEYDLARDDFQKALKL 320 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-hhccHHHHHHHHHHHHHh
Confidence 3445555555555555555555544444455555555555555 566666666666665554
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.03 E-value=3.8 Score=32.59 Aligned_cols=137 Identities=10% Similarity=-0.074 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHh-HHHHHHHHHcCCChhhHHHHHhhccCC-CCCchH---hHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIED-FQGLLSALCRYKNVQDAEHLMFCNKDV-FPFNTK---SFNI 177 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~---~~~~ 177 (481)
...|...+. +++.+..++|+..|..+.+.|...-+.. ...........|+...|...|+++... ..|-.. .--.
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 556666665 4567889999999999998876544432 223445677889999999999886432 112211 1111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 042941 178 ILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIEC 241 (481)
Q Consensus 178 l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 241 (481)
-.-.+. ..|.++....-++-+...+-+.-...-..|.-+-.+.|++.+|...|..+......|
T Consensus 138 aa~lLv-D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 138 AAYLLV-DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHh-ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 122344 789999999988888777666666677788888899999999999999887643333
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.03 E-value=3.9 Score=36.27 Aligned_cols=152 Identities=8% Similarity=-0.074 Sum_probs=95.6
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhH----HHHHHHHHHhcCCH
Q 042941 114 CAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSF----NIILNGWCNIIGSS 189 (481)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~ 189 (481)
...|++.+|-..++++++. .+.|.-.++..-++|.-.|+.+.-...++++.....+|...| .++.-++. ..|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~-E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE-ECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH-Hhccc
Confidence 3457777777777777753 345666777777788888887777777777554433444222 23333444 77888
Q ss_pred HHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 042941 190 REAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM---GIECDRKVYNAVIHALAKGRLVKDAISLM 266 (481)
Q Consensus 190 ~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 266 (481)
++|++.-++..+.+.. |.-.-.++...+-..|++.++.++..+-... +--.-.+-|-...-.+...+.++.|+.+|
T Consensus 192 ~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 8888888777766433 5556667777777788888888776654321 11111233333444566668888888888
Q ss_pred HH
Q 042941 267 KS 268 (481)
Q Consensus 267 ~~ 268 (481)
+.
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 74
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.96 E-value=3.4 Score=37.70 Aligned_cols=228 Identities=12% Similarity=0.022 Sum_probs=121.7
Q ss_pred HHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHh--h--cCCC-CCHHhHHHHHHHH
Q 042941 74 ILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYK--R--FKFA-VGIEDFQGLLSAL 148 (481)
Q Consensus 74 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~--~~~~-~~~~~~~~ll~~~ 148 (481)
-+++.|+...-..+|+...+.|...-..-..+|..|..+|.-.+++++|++....=. . .|-+ -.......|.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 467888888888888888777643211123456677777777788888877643211 0 1100 0111222233334
Q ss_pred HcCCChhhHHHHHhh-------ccCCCCCchHhHHHHHHHHHHhcC--------------------CHHHHHHHHHHHH-
Q 042941 149 CRYKNVQDAEHLMFC-------NKDVFPFNTKSFNIILNGWCNIIG--------------------SSREAERVWMEMS- 200 (481)
Q Consensus 149 ~~~~~~~~a~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~~a~~~~~~~~- 200 (481)
--.|.+++|.-+-.+ +...+. ....+.-+...|. ..| .++.|.++|.+=.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~-e~RAlYNlgnvYh-akGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVL-ESRALYNLGNVYH-AKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHh-hhHHHhhhhhhhh-hcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 444555555433211 111111 1112222223332 111 1233444443211
Q ss_pred ---hcCCc-ccHHhHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 042941 201 ---QRGIC-YDVVSFSCIISCYSKARNLHKVLRLFDQMK----RMGIE-CDRKVYNAVIHALAKGRLVKDAISLMKSMEE 271 (481)
Q Consensus 201 ---~~g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (481)
+.|-. .-...|..|.+.|.-.|+++.|+...+.-. +.|.+ .....+..+.+++.-.|+++.|.+.|+....
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 11110 112345666666777789999987765432 23322 2345678888999999999999999886542
Q ss_pred ----cCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 042941 272 ----KGV-APNVVTYNSLIKPLCKARKLDEARQAFDE 303 (481)
Q Consensus 272 ----~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 303 (481)
.|- .....+.-+|-.+|.-..++.+|+.++..
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 221 22344566677777777788888887764
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.95 E-value=8.1 Score=36.24 Aligned_cols=146 Identities=10% Similarity=0.017 Sum_probs=76.8
Q ss_pred hhhHHHHHhhcc---CCCCCchHhHHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcC
Q 042941 154 VQDAEHLMFCNK---DVFPFNTKSFNIILNGWCNI--------IGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKAR 222 (481)
Q Consensus 154 ~~~a~~~~~~~~---~~~~~~~~~~~~l~~~~~~~--------~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~ 222 (481)
.+.|..+|.+.. ...|.....|..+..++... .....+|.++-+...+.+.. |......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 456777777754 32222344444443333311 22334555555555555433 6666666666666677
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHH
Q 042941 223 NLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPN-VVTYNSLIKPLCKARKLDEARQAF 301 (481)
Q Consensus 223 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~ 301 (481)
+++.+..+|++....+ +-...+|....-.+.-.|+.++|.+.+++..+..+..- .......+..|+.. ..+.|..+|
T Consensus 353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 7777777777777653 22334444444455567777777777777655432111 11222233345443 345555554
Q ss_pred H
Q 042941 302 D 302 (481)
Q Consensus 302 ~ 302 (481)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 3
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.88 E-value=6.5 Score=34.93 Aligned_cols=153 Identities=10% Similarity=0.032 Sum_probs=109.8
Q ss_pred HcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCcccHHhH--HHHHHHHHhcCCHH
Q 042941 149 CRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR-GICYDVVSF--SCIISCYSKARNLH 225 (481)
Q Consensus 149 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~--~~ll~~~~~~~~~~ 225 (481)
-..|+..+|....+++...+|.|...++-.=.++. -.|+.......++++... +....-.+| ..+..++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~f-y~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHF-YNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHH-hccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34577777777788877778889888888888888 889999988888887654 222222233 34445667889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 042941 226 KVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK---GVAPNVVTYNSLIKPLCKARKLDEARQAFD 302 (481)
Q Consensus 226 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 302 (481)
+|++.-++..+.+ +.|.-.-.+....+...|++.++.+...+-... +--.-...|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999988875 567777788888899999999999887654432 100011223333344567799999999998
Q ss_pred H
Q 042941 303 E 303 (481)
Q Consensus 303 ~ 303 (481)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 5
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.53 E-value=4 Score=31.62 Aligned_cols=42 Identities=10% Similarity=-0.064 Sum_probs=19.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhc
Q 042941 178 ILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKA 221 (481)
Q Consensus 178 l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 221 (481)
++..+. ..+.......+++.+...+. .+....+.++..|++.
T Consensus 13 vv~~~~-~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFE-KRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHH-hCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 334443 44445555555555444432 3444444555555443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.47 E-value=3.6 Score=30.93 Aligned_cols=91 Identities=20% Similarity=0.151 Sum_probs=58.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHH---HHHHHhcCC
Q 042941 217 CYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSL---IKPLCKARK 293 (481)
Q Consensus 217 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~ 293 (481)
+++..|+.+.|++.|.+....- +-....||.-..++.-.|+.++|++-+++..+..-..+.....+. -..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4566778888888887776652 456677888888888888888888777777654221122222222 224455677
Q ss_pred HHHHHHHHHHHHHCC
Q 042941 294 LDEARQAFDEMLQRG 308 (481)
Q Consensus 294 ~~~a~~~~~~m~~~~ 308 (481)
-+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777766655
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.46 E-value=7.6 Score=34.65 Aligned_cols=24 Identities=8% Similarity=0.077 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhcCCCCCHHhHHH
Q 042941 120 GRAINAFYAYKRFKFAVGIEDFQG 143 (481)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~ 143 (481)
++.+.+++.+.+.|..-+..+|-+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~la 102 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHH
Confidence 445566777777776666655544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.29 E-value=3.8 Score=30.81 Aligned_cols=91 Identities=15% Similarity=0.041 Sum_probs=51.4
Q ss_pred HHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHH---hHHHHHHHHHhcCC
Q 042941 147 ALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVV---SFSCIISCYSKARN 223 (481)
Q Consensus 147 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~ll~~~~~~~~ 223 (481)
++...|+.+.|++.|.+.....|.....||.-..++- -.|+.++|++=+++..+..-.-+.. .|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~R-Lq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALR-LQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHH-HcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4556666666666666655445556666666666666 6666666666666555432111222 22222234555666
Q ss_pred HHHHHHHHHHHHHcC
Q 042941 224 LHKVLRLFDQMKRMG 238 (481)
Q Consensus 224 ~~~a~~~~~~~~~~~ 238 (481)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666665555
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=92.08 E-value=2 Score=30.23 Aligned_cols=62 Identities=13% Similarity=0.051 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHH
Q 042941 119 VGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILN 180 (481)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 180 (481)
.=++.+.++.+...++.|++....+.+++|-+.+++..|.++|+.++..+..+...|..++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 33455555566666666777777777777777777777777776655433333334444433
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.99 E-value=6.7 Score=33.03 Aligned_cols=201 Identities=13% Similarity=0.054 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHH-H
Q 042941 104 QTLLILIRRYCAVHDVGRAINAFYAYKRF-KFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILN-G 181 (481)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~-~ 181 (481)
..+......+...+++..+...+...... ........+......+...+++..+...+.......+.+......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444445555555555555555554431 112233344444445555555555555555433321111112222222 4
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCC--cccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCC
Q 042941 182 WCNIIGSSREAERVWMEMSQRGI--CYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIEC-DRKVYNAVIHALAKGRL 258 (481)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~ 258 (481)
+. ..|+++.+...+........ ......+......+...++.+.+...+....... .. ....+..+...+...++
T Consensus 140 ~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 140 LY-ELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HH-HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 55 66777777777776644211 0122233333334556677777777777776653 22 35666667777777777
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 259 VKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
++.+...+......... ....+..+...+...+..+.+...+......
T Consensus 218 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777777665222 1233333334444556677777777666554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.84 E-value=4 Score=33.18 Aligned_cols=101 Identities=6% Similarity=0.052 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH-HH--H
Q 042941 346 DTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDR--SSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT-DE--L 420 (481)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~--~ 420 (481)
..+..+...|++.|+.+.|.+.+.++.+....+.. .++-.+|......|++..+...+.+....--.++... -+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 46788999999999999999999999986555443 3677889999999999999999888766533333222 22 1
Q ss_pred HHH--HHhhhhHHHHHHHHHhhcCccCC
Q 042941 421 LQD--WSYNKQFVERQIASLKAHQPQSG 446 (481)
Q Consensus 421 l~~--~~~~~~~~~~~~~~~~~~~~~~~ 446 (481)
+.. .+...+....+.+.+.+..+...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 222 12355777788888888887654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.74 E-value=8.9 Score=34.51 Aligned_cols=234 Identities=9% Similarity=-0.007 Sum_probs=132.0
Q ss_pred HHHHHHHHh-hcCHHHHHHHHHHhhhCCC-CCCCHHHHHHHHHHHhccCChhHHHHHHHH----HhcCCCCCCcccHHHH
Q 042941 33 LVSEVLSWV-RNDWEAAFTFFLWAGKQSG-YAHSTREYHTMIAILGKVRKFDTAWALIDE----MRGGETGPSLVTKQTL 106 (481)
Q Consensus 33 ~~~~~l~~~-~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~----~~~~~~~p~~~~~~~~ 106 (481)
....-+..+ .++.+.|+..+.....+.. ...-..+|..+..+.++.|.+++++..--. ..+. .....--.+|
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~~ea~ 86 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDFLLEAY 86 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 333333434 3556666666555543321 112356788888889999988876553222 1111 0011113455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhc-CCCC---CHHhHHHHHHHHHcCCChhhHHHHHhhccC------CCCCchHhHH
Q 042941 107 LILIRRYCAVHDVGRAINAFYAYKRF-KFAV---GIEDFQGLLSALCRYKNVQDAEHLMFCNKD------VFPFNTKSFN 176 (481)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~ 176 (481)
..+.+++-+..++.+++.+-+.-... |..| .-....++..++...+.++++++.|+.... .......++-
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv 166 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV 166 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence 56666666666677777666654432 1112 112344566788888888888888876311 1122345678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh----cCCcccHH-hHH-----HHHHHHHhcCCHHHHHHHHHHHHH----cCCCC-
Q 042941 177 IILNGWCNIIGSSREAERVWMEMSQ----RGICYDVV-SFS-----CIISCYSKARNLHKVLRLFDQMKR----MGIEC- 241 (481)
Q Consensus 177 ~l~~~~~~~~~~~~~a~~~~~~~~~----~g~~~~~~-~~~-----~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~- 241 (481)
.+-..|. +..++++|.-+.....+ .++. |.. -|. .+.-++...|...+|.+.-++..+ .|..+
T Consensus 167 ~Lgslf~-~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 167 SLGSLFA-QLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hHHHHHH-HHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 8888888 88888888766554332 2332 221 122 233355667777777666665543 34222
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 042941 242 DRKVYNAVIHALAKGRLVKDAISLMKSME 270 (481)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 270 (481)
.......+.+.|-..|+.+.|..-|++..
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 12233456677888899888887777653
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.65 E-value=9.2 Score=33.89 Aligned_cols=161 Identities=11% Similarity=0.098 Sum_probs=76.1
Q ss_pred HHHHHHHHHHcCCChH---HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042941 245 VYNAVIHALAKGRLVK---DAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLD 321 (481)
Q Consensus 245 ~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 321 (481)
+...++.+|...+..+ +|..+++.+...... ...++..-+..+.+.++.+.+.+++..|...-.. ....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHHH
Confidence 4556666666666544 444555555443222 2334444455555577777777777777765221 2233333333
Q ss_pred HHh---c--hhHHHHHHHHHHHcCCCCCHH-HHH-HHHH---HHHhcCC------hhHHHHHHHHHHH-CCCCCCHHHHH
Q 042941 322 IIR---T--GEEVFGLLESMRKMGCQPTND-TYI-MLIK---KFSRWRQ------FGNVFKVWNEISE-NGNGPDRSSYT 384 (481)
Q Consensus 322 ~~~---~--~~~~~~~~~~~~~~~~~~~~~-~~~-~l~~---~~~~~g~------~~~a~~~~~~~~~-~~~~~~~~~~~ 384 (481)
.+. . .+.+...+..+....+.|... ... .++. ...+.++ ++...++++.+.+ .+.+.+..+-.
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 331 1 123344444444333344432 111 1111 1122111 4444455554333 22223333322
Q ss_pred ---HH----HHHHHhcCCHHHHHHHHHHHH
Q 042941 385 ---AL----IHALFLNGKLEEAHQYYMEMK 407 (481)
Q Consensus 385 ---~l----~~~~~~~g~~~~A~~~~~~m~ 407 (481)
++ ...+.+.+++++|.+.|+-..
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22 234667899999999988543
|
It is also involved in sporulation []. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.58 E-value=2.9 Score=36.60 Aligned_cols=102 Identities=14% Similarity=0.143 Sum_probs=64.4
Q ss_pred CCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCC----CCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccH
Q 042941 133 KFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVF----PFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDV 208 (481)
Q Consensus 133 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 208 (481)
|.+....+...++.......+++.++..+-.++... .|+. +-..+++.+. .-++++++.++..=.+.|+-||.
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll--ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL--KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH--ccChHHHHHHHhCcchhccccch
Confidence 444455555556666666667777777776655431 1221 1222333332 45566777777777777888888
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042941 209 VSFSCIISCYSKARNLHKVLRLFDQMKRM 237 (481)
Q Consensus 209 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 237 (481)
++++.+|+.+.+.+++.+|..+.-.|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888888888777777666554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.67 Score=25.30 Aligned_cols=28 Identities=39% Similarity=0.533 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 381 SSYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
.+|..+..+|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566777777777888888877777765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=91.15 E-value=9.8 Score=33.27 Aligned_cols=119 Identities=13% Similarity=0.182 Sum_probs=65.3
Q ss_pred hcCCHHHHHHHHHHHHh-cCCcccHHhHHHHHHHHHh-cC-CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCChH
Q 042941 185 IIGSSREAERVWMEMSQ-RGICYDVVSFSCIISCYSK-AR-NLHKVLRLFDQMKR-MGIECDRKVYNAVIHALAKGRLVK 260 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~ 260 (481)
+.....+|+++|+.... ..+--|......+++.... .+ ....-.++.+.+.. .|-.++..+...++..+++.+++.
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 34445566666653221 1223355555555544433 11 22233333333333 233566666777777777777777
Q ss_pred HHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 042941 261 DAISLMKSMEEK-GVAPNVVTYNSLIKPLCKARKLDEARQAFDE 303 (481)
Q Consensus 261 ~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 303 (481)
+-.++++..... +..-|...|..+|......|+..-...+..+
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 777777666544 4555777777777777777777666665553
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=90.91 E-value=10 Score=33.12 Aligned_cols=115 Identities=12% Similarity=0.235 Sum_probs=80.1
Q ss_pred CCHHHHHHHHHHHhch-----hHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHH
Q 042941 311 PTIRTYHAFLDIIRTG-----EEVFGLLESMRKM-GCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISEN-GNGPDRSSY 383 (481)
Q Consensus 311 p~~~~~~~li~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ 383 (481)
-|......+++..... ....++.+.+... +-.++..+...++..++..+++.+-.++|+..... +..-|...|
T Consensus 162 ~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW 241 (292)
T PF13929_consen 162 FDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPW 241 (292)
T ss_pred eChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchH
Confidence 3455555555544331 1124445544433 45778888999999999999999999999988765 666788899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH-----HHHCCCCCCHhHHHHHHHHH
Q 042941 384 TALIHALFLNGKLEEAHQYYME-----MKEKQLLPEPKTDELLQDWS 425 (481)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~-----m~~~~~~p~~~~~~~l~~~~ 425 (481)
..+|......|+..-..++.++ +...++..++..-..+-+.+
T Consensus 242 ~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 242 AEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 9999999999999888877765 23345666665555544444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.71 E-value=0.5 Score=26.38 Aligned_cols=23 Identities=30% Similarity=0.223 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 042941 106 LLILIRRYCAVHDVGRAINAFYA 128 (481)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~ 128 (481)
|..|...|.+.|++++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444445555555555555544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.67 E-value=14 Score=34.35 Aligned_cols=129 Identities=12% Similarity=0.138 Sum_probs=69.1
Q ss_pred HHhHHHHHHHHHcCCChhhHHHHHhhccC-C-CCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhH-HHH
Q 042941 138 IEDFQGLLSALCRYKNVQDAEHLMFCNKD-V-FPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSF-SCI 214 (481)
Q Consensus 138 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~l 214 (481)
..+|...++...+...++.|..+|-+++. + ..+++..++++|..++ .|+...|..+|+.-... -||...| +..
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~--~~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA--TGDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh--cCCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 34455566666666666666666655432 2 3455666666666655 46666666666543322 1233322 334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 042941 215 ISCYSKARNLHKVLRLFDQMKRMGIECD--RKVYNAVIHALAKGRLVKDAISLMKSMEE 271 (481)
Q Consensus 215 l~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (481)
+..+...++-..|..+|+..... +..+ ...|..+|.--..-|+...+..+=+.+..
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 45555666666666666643332 1112 34566666666666666666655555554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.40 E-value=7.5 Score=30.66 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=10.1
Q ss_pred hccCChhHHHHHHHHHhcC
Q 042941 76 GKVRKFDTAWALIDEMRGG 94 (481)
Q Consensus 76 ~~~g~~~~a~~~~~~~~~~ 94 (481)
.+.|++.+|..+|+++.+.
T Consensus 55 i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHhCCHHHHHHHHHHHhcc
Confidence 3455555555555555443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.11 E-value=11 Score=32.04 Aligned_cols=176 Identities=10% Similarity=0.055 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHH
Q 042941 104 QTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWC 183 (481)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 183 (481)
..|.....+|...+++++|...+.+..+ +...+...|. ....++.|.-+.+++.. .+.-...|+.....|.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh-------AAKayEqaamLake~~k-lsEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-------AAKAYEQAAMLAKELSK-LSEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-------HHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence 3455555667777777777776666542 1122222111 11233444444443332 2223445666666777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---C--CCCCHHHHHHHHHHHHcCCC
Q 042941 184 NIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM---G--IECDRKVYNAVIHALAKGRL 258 (481)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~li~~~~~~g~ 258 (481)
.+|.++.|-..+++.-+. ....++++|+++|++.... + ..--...+...-..+.+...
T Consensus 103 -E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 103 -ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred -HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 777777766666654332 2334455666666554321 1 01112234445556667777
Q ss_pred hHHHHHHHHHHHHc----CCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 259 VKDAISLMKSMEEK----GVAPNV-VTYNSLIKPLCKARKLDEARQAFDEML 305 (481)
Q Consensus 259 ~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~ 305 (481)
+++|-..|.+-... .--++. ..|-..|-.|.-..++..|...++.--
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~ 217 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCS 217 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchh
Confidence 77666555443211 011111 224444455556678888888887643
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.87 E-value=1 Score=24.38 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 382 SYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
.|..+...+.+.|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456667777777777777777777665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.83 E-value=16 Score=33.60 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 343 PTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGP---DRSSYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 343 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
....++..+...+.+.|.++.|...+.++...+..+ .+.....-...+...|+..+|+..+++..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678889999999999999999999988754211 344455567778889999999999988877
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.75 E-value=9 Score=30.61 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=20.7
Q ss_pred HHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHH
Q 042941 127 YAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM 161 (481)
Q Consensus 127 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 161 (481)
+.+.+.+++|+...+..+++.+.+.|++....+++
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33445556666666666666666666655555444
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.71 E-value=44 Score=38.44 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------Hh
Q 042941 345 NDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPE--------PK 416 (481)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--------~~ 416 (481)
..+|....+..-.+|+++.|...+-...+.+ -+..+--...-....|+...|+.++++-.+.. .|+ +.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~-~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN-FPDLHTPYTDTPQ 1745 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh-cccccCCccccch
Confidence 4567777777788999999988877776654 23345566777889999999999999887652 222 22
Q ss_pred HHHHHH---------HHHh-----hhhHHHHHHHHHhhcCccCCCCccccccccccc
Q 042941 417 TDELLQ---------DWSY-----NKQFVERQIASLKAHQPQSGQNTRVISKKSDQD 459 (481)
Q Consensus 417 ~~~~l~---------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 459 (481)
.-+..+ .+.. ...+..+....+.+..|...+.+..++..|.+.
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kl 1802 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKL 1802 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHH
Confidence 222221 1111 224444677788888888888888888665443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.31 E-value=3.2 Score=29.27 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 042941 226 KVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSME 270 (481)
Q Consensus 226 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 270 (481)
++.+-++.+...++.|++....+.+++|-+.+++..|.++|+-++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444445555555555555555555555555555555554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=89.25 E-value=5.9 Score=35.57 Aligned_cols=122 Identities=13% Similarity=0.149 Sum_probs=59.8
Q ss_pred hcCCHHHHHHHHHHHHhcC--CcccHHhHHHHHHHHHhcCCHHHHHHHHHHHH----HcC-CCCCHHHHHHHHHHHHcCC
Q 042941 185 IIGSSREAERVWMEMSQRG--ICYDVVSFSCIISCYSKARNLHKVLRLFDQMK----RMG-IECDRKVYNAVIHALAKGR 257 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~-~~~~~~~~~~li~~~~~~g 257 (481)
...+.++|+..+......- ...--.+|..+..+.++.|.+++++..--.-. +.. -..-...|..+.+++-+..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666555443320 00112345556667777777776655322111 110 0011234444555555555
Q ss_pred ChHHHHHHHHHHHHc-CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 258 LVKDAISLMKSMEEK-GVAP---NVVTYNSLIKPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 258 ~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 306 (481)
++.+++.+-..-... |..| ......++-.+..-.+.++++++.|+...+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~ 150 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALR 150 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHH
Confidence 555555555443322 2222 112233455666667778888888877654
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.95 E-value=12 Score=30.86 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=56.2
Q ss_pred HhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc---CCCCCHHhHHHHHHHHHcC
Q 042941 75 LGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRF---KFAVGIEDFQGLLSALCRY 151 (481)
Q Consensus 75 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~ 151 (481)
+++.|+ +.|...|-.+...+.--+ +.....+...|. ..+.++++.++....+. +-.+|+..+.+|...+.+.
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t---~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~ 191 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELET---AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL 191 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCC---HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 344454 678888888877654433 666666666665 56788888888877642 3357788888899999888
Q ss_pred CChhhHH
Q 042941 152 KNVQDAE 158 (481)
Q Consensus 152 ~~~~~a~ 158 (481)
++++.|-
T Consensus 192 ~~~e~AY 198 (203)
T PF11207_consen 192 KNYEQAY 198 (203)
T ss_pred cchhhhh
Confidence 8888774
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=88.93 E-value=21 Score=33.84 Aligned_cols=70 Identities=13% Similarity=0.141 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 042941 347 TYIMLIKKFSRWRQFGNVFKVWNEISENGNG-PDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417 (481)
Q Consensus 347 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 417 (481)
+-..+..++-+.|+.++|.+.+++|.+.... .+......|+.++...+.+.++..++.+--+- ..|...+
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi-~lpkSAt 331 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI-SLPKSAT 331 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-cCCchHH
Confidence 3345666777899999999999999764322 24447778999999999999999999886432 2344443
|
The molecular function of this protein is uncertain. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.81 E-value=10 Score=29.95 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=8.0
Q ss_pred hcCCHHHHHHHHHHHHh
Q 042941 185 IIGSSREAERVWMEMSQ 201 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~ 201 (481)
..|+|.+|.++|+.+..
T Consensus 56 ~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 56 VRGDWDDALRLLRELEE 72 (160)
T ss_pred HhCCHHHHHHHHHHHhc
Confidence 44444444444444433
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.59 E-value=13 Score=30.94 Aligned_cols=161 Identities=14% Similarity=0.100 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHH
Q 042941 243 RKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGI-SPTIRTYHAFLD 321 (481)
Q Consensus 243 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~ 321 (481)
+.+||-+.--+...|+++.|.+.|+...+..+.-+-...|.-|. +.-.|++..|.+-+-+.-+.+. .|=...|-.++.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 34566666666666777777777776666543322222222222 2234666666655555444332 222233333333
Q ss_pred HHhchhHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC------CCHHHHHHHHHHHHhcC
Q 042941 322 IIRTGEEV-FGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNG------PDRSSYTALIHALFLNG 394 (481)
Q Consensus 322 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g 394 (481)
.-.+..++ ..+.++..+ .+..-|...|-.|. .|++. ...+++++....-. .-..+|-.+.+-+...|
T Consensus 178 ~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 178 QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFY-LGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 32222222 222222221 22233332222221 11211 11222222221000 11347778888889999
Q ss_pred CHHHHHHHHHHHHHCC
Q 042941 395 KLEEAHQYYMEMKEKQ 410 (481)
Q Consensus 395 ~~~~A~~~~~~m~~~~ 410 (481)
+.++|..+|+-.+...
T Consensus 252 ~~~~A~~LfKLaiann 267 (297)
T COG4785 252 DLDEATALFKLAVANN 267 (297)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 9999999999876543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.56 E-value=1.9 Score=37.74 Aligned_cols=100 Identities=17% Similarity=0.149 Sum_probs=65.3
Q ss_pred CCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCC---CCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 042941 59 SGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGE---TGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFA 135 (481)
Q Consensus 59 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 135 (481)
.|.+.+..+-...+..-....+++.++..+-.+.... ..|+ -+..+ .++.+ -.-++++++.++..=...|+-
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~~~~---~irll-lky~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WTIHT---WIRLL-LKYDPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-ccHHH---HHHHH-HccChHHHHHHHhCcchhccc
Confidence 4556666777777777777788888888887776531 1111 01122 22222 234566777777777777888
Q ss_pred CCHHhHHHHHHHHHcCCChhhHHHHHhh
Q 042941 136 VGIEDFQGLLSALCRYKNVQDAEHLMFC 163 (481)
Q Consensus 136 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 163 (481)
||..+++.+|+.+.+.+++.+|.++...
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~ 160 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTE 160 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 8888888888888888887777776654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=88.50 E-value=23 Score=33.65 Aligned_cols=60 Identities=17% Similarity=0.093 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-CHHhHHHHHHHHHcCCChhhHHHHHhhccC
Q 042941 107 LILIRRYCAVHDVGRAINAFYAYKRFKFAV-GIEDFQGLLSALCRYKNVQDAEHLMFCNKD 166 (481)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 166 (481)
..+...+.+.|+.++|++.++++.+..... .......|+.++...+.+.++..++.+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 345556667788888888888877543221 233555677888888888888888777544
|
The molecular function of this protein is uncertain. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.38 E-value=1.5 Score=25.07 Aligned_cols=29 Identities=31% Similarity=0.313 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 380 RSSYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
..+++.|...|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35677888888888888888888888654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.92 E-value=0.61 Score=25.66 Aligned_cols=20 Identities=20% Similarity=0.104 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhcCCHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRA 122 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a 122 (481)
+.+|..+...+...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 44444444444444444444
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.31 E-value=19 Score=31.46 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=45.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 042941 210 SFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSME 270 (481)
Q Consensus 210 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 270 (481)
+++...+.|..+|.+.+|..+.+.....+ +.+...+-.++..+...|+--.+.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34555677888888888888888887765 6677778888888888888777777666664
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.63 E-value=26 Score=32.16 Aligned_cols=310 Identities=13% Similarity=0.081 Sum_probs=150.9
Q ss_pred cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHh--ccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHH--HHHhcCC
Q 042941 43 NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILG--KVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIR--RYCAVHD 118 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~--~~~~~~~ 118 (481)
..+..+-+.|..-.++.| |.++-.++. -.|+-..|.++-.+-.+. +.-| ......++. +..-.|+
T Consensus 67 ~sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l-lssD---qepLIhlLeAQaal~eG~ 135 (531)
T COG3898 67 ESPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL-LSSD---QEPLIHLLEAQAALLEGD 135 (531)
T ss_pred hCcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhcc---chHHHHHHHHHHHHhcCc
Confidence 455566666665543333 444444443 345666666655543221 1112 233333333 2334577
Q ss_pred HHHHHHHHHHHhhcCCCCCHHh--HHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHH
Q 042941 119 VGRAINAFYAYKRFKFAVGIED--FQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVW 196 (481)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~ 196 (481)
.+.|.+-|+.|.. .|.... +..|.-...+.|+.+.|.+.-+.....-+.-...+...+...| ..|+|+.|++++
T Consensus 136 ~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~-~~gdWd~AlkLv 211 (531)
T COG3898 136 YEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARC-AAGDWDGALKLV 211 (531)
T ss_pred hHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHH-hcCChHHHHHHH
Confidence 7777777777764 122221 2233334455666666666666554444445566667777777 777777777777
Q ss_pred HHHHhcC-CcccHH--hHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHcCCChHHHHHHHHHH
Q 042941 197 MEMSQRG-ICYDVV--SFSCIISCYS---KARNLHKVLRLFDQMKRMGIECDRKV-YNAVIHALAKGRLVKDAISLMKSM 269 (481)
Q Consensus 197 ~~~~~~g-~~~~~~--~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~ 269 (481)
+.-.... +.++.. .-..|+.+-. -.-+...|...-.+..+. .||... -..-..++.+.|+..++-.+++.+
T Consensus 212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~a 289 (531)
T COG3898 212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETA 289 (531)
T ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence 6554432 223322 1122222111 112344555554444443 344322 222345677777777777777777
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHhchhHHHHHHHHHHH-cCCCCCHH
Q 042941 270 EEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQR-GISPT-IRTYHAFLDIIRTGEEVFGLLESMRK-MGCQPTND 346 (481)
Q Consensus 270 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~-~~~~~~li~~~~~~~~~~~~~~~~~~-~~~~~~~~ 346 (481)
-+..+.|+.. .+..+.+.|+ .+..=++...+. .++|| ..+...+..+--..++....-..... ....|...
T Consensus 290 WK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres 363 (531)
T COG3898 290 WKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES 363 (531)
T ss_pred HhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh
Confidence 7765554432 2222333443 333333332211 12233 22223333332222222111111110 12367777
Q ss_pred HHHHHHHHH-HhcCChhHHHHHHHHHHHCC
Q 042941 347 TYIMLIKKF-SRWRQFGNVFKVWNEISENG 375 (481)
Q Consensus 347 ~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~ 375 (481)
.|..|.+.- ...|+-+++...+.+..+..
T Consensus 364 ~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 364 AYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 777776655 34588888888888887753
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=86.51 E-value=41 Score=34.45 Aligned_cols=189 Identities=12% Similarity=0.035 Sum_probs=97.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHH-HHHcCCChHHHHHHHHHHHHc----CCCCChhhHHHHHH
Q 042941 219 SKARNLHKVLRLFDQMKRMGIECDR-------KVYNAVIH-ALAKGRLVKDAISLMKSMEEK----GVAPNVVTYNSLIK 286 (481)
Q Consensus 219 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~-~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~ 286 (481)
....++++|..++.++...=..|+. ..++.+-. .....|+++.|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3466788888888777654212221 12333221 234567888888877766543 22334555566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH---H--HhchhHH-----HHHHHHHHHc---CC---CCCHHHHHH
Q 042941 287 PLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLD---I--IRTGEEV-----FGLLESMRKM---GC---QPTNDTYIM 350 (481)
Q Consensus 287 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~---~--~~~~~~~-----~~~~~~~~~~---~~---~~~~~~~~~ 350 (481)
+..-.|++++|..+..+..+..-.-+...+..... + +...|++ ...+...... .. .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 77778899999888887655433334433332222 1 1122221 1111111111 11 122344555
Q ss_pred HHHHHHhcCChhHHHHHHHHHH----HCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 351 LIKKFSRWRQFGNVFKVWNEIS----ENGNGPDRSSY--TALIHALFLNGKLEEAHQYYMEMKEKQ 410 (481)
Q Consensus 351 l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~ 410 (481)
++.++.+ ++.+..-...-. .....|-...+ ..|+......|+.++|...++++....
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 6666655 333332222221 22222222222 256778888999999999888877653
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=86.16 E-value=20 Score=30.36 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=58.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CC-----------CCCCHHHHHHHHHHHHhcCCHH
Q 042941 330 FGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISE-NG-----------NGPDRSSYTALIHALFLNGKLE 397 (481)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~-----------~~~~~~~~~~l~~~~~~~g~~~ 397 (481)
.++.+-....+++.+.....+++ +...|+..+|+..++.-.. .| -.|.+.....++..|. .++++
T Consensus 179 ~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~ 255 (333)
T KOG0991|consen 179 KRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNID 255 (333)
T ss_pred HHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHH
Confidence 34444444556666666666665 6677888888887775543 11 1467777777776655 45899
Q ss_pred HHHHHHHHHHHCCCCCCHhHH
Q 042941 398 EAHQYYMEMKEKQLLPEPKTD 418 (481)
Q Consensus 398 ~A~~~~~~m~~~~~~p~~~~~ 418 (481)
+|.+.+.++.+.|+.|....-
T Consensus 256 ~A~~il~~lw~lgysp~Dii~ 276 (333)
T KOG0991|consen 256 EALKILAELWKLGYSPEDIIT 276 (333)
T ss_pred HHHHHHHHHHHcCCCHHHHHH
Confidence 999999999999988866543
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=86.01 E-value=41 Score=33.88 Aligned_cols=221 Identities=12% Similarity=0.085 Sum_probs=98.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHh---
Q 042941 215 ISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGV-APNVVTYNSLIKPLCK--- 290 (481)
Q Consensus 215 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~--- 290 (481)
...+.-.|+++.|.+.+-. ..+...|..++.+.+.-|.-.+-.+... ..+..... .|...-+..||..|++
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 4455668899999888876 2223456666665555443322222211 22221110 1112557788888876
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhchhHHHHHHHHHHHcC---------------CC-CCHHH---HHH
Q 042941 291 ARKLDEARQAFDEMLQRGISPTIRTYHAFLDI-IRTGEEVFGLLESMRKMG---------------CQ-PTNDT---YIM 350 (481)
Q Consensus 291 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~~~~~~~~~~~---------------~~-~~~~~---~~~ 350 (481)
..++..|.++|--+....-+.....+...+.- ....++...++..+...| +. +.... ...
T Consensus 340 ~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~ 419 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQ 419 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHH
Confidence 46788888888877665332222223332222 122233333332221111 12 12222 233
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCC-----------HHHHHHHHHHHHHCCC-----CC
Q 042941 351 LIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALF-LNGK-----------LEEAHQYYMEMKEKQL-----LP 413 (481)
Q Consensus 351 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~-----------~~~A~~~~~~m~~~~~-----~p 413 (481)
...-+...|++++|..+|.-..+.+ .-....|.++.-.. .... ...|..+.+.....+. .+
T Consensus 420 ~A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~ 497 (613)
T PF04097_consen 420 AAREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSR 497 (613)
T ss_dssp HHHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-H
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccH
Confidence 4445677888999988888765421 11223444443332 2222 3455555555544321 11
Q ss_pred -CHhHHHHHHHH-----HhhhhHHHHHHHHHhhcC
Q 042941 414 -EPKTDELLQDW-----SYNKQFVERQIASLKAHQ 442 (481)
Q Consensus 414 -~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~ 442 (481)
...|+..|+.. +...|..+.+++.+.+..
T Consensus 498 ~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 498 KNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 23455555553 346677778887776654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=85.94 E-value=33 Score=32.74 Aligned_cols=179 Identities=15% Similarity=0.101 Sum_probs=121.9
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHH
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQ 142 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (481)
.|....-+++..|+..-.+.-.+.+..+|..-|- + -..|..++..|..+ ..+.-..+++++.+..+. |+..-.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~---kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~R 136 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--S---KMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGR 136 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--h---HHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHH
Confidence 5777888999999999999999999999988642 3 67888999999888 667888899988887643 444334
Q ss_pred HHHHHHHcCCChhhHHHHHhhccCCCCC------chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCcccHHhHHHHH
Q 042941 143 GLLSALCRYKNVQDAEHLMFCNKDVFPF------NTKSFNIILNGWCNIIGSSREAERVWMEMSQR-GICYDVVSFSCII 215 (481)
Q Consensus 143 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~ll 215 (481)
.|..-|-+ ++.+.+...|..+...+-| -...|..+... -..+.+....+...+... |...-...+.-+-
T Consensus 137 eLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~---i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~ 212 (711)
T COG1747 137 ELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL---IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVY 212 (711)
T ss_pred HHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh---ccccHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 45555544 7777777777664332222 22345555543 246667777766666543 4444455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042941 216 SCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHAL 253 (481)
Q Consensus 216 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 253 (481)
.-|....++.+|++++..+.+.+ ..|.-+-..++.-+
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 77888899999999999888775 33444444444443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.88 E-value=15 Score=30.30 Aligned_cols=80 Identities=10% Similarity=0.002 Sum_probs=59.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhc----cCCCCCchHhHHHHHHHHHHhcC
Q 042941 112 RYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCN----KDVFPFNTKSFNIILNGWCNIIG 187 (481)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~ 187 (481)
.+.....-+.|...|-.+...+.--++.....|...|. ..+.+++++++.+. ..+..+|+..+..|...+. +.+
T Consensus 115 y~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~-~~~ 192 (203)
T PF11207_consen 115 YHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQ-KLK 192 (203)
T ss_pred HHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH-Hhc
Confidence 34445456788888888887765556666666666666 67889999988763 2334778999999999999 999
Q ss_pred CHHHHH
Q 042941 188 SSREAE 193 (481)
Q Consensus 188 ~~~~a~ 193 (481)
+++.|-
T Consensus 193 ~~e~AY 198 (203)
T PF11207_consen 193 NYEQAY 198 (203)
T ss_pred chhhhh
Confidence 998874
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.65 E-value=10 Score=36.67 Aligned_cols=43 Identities=9% Similarity=-0.021 Sum_probs=22.5
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhh
Q 042941 115 AVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFC 163 (481)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 163 (481)
+.|+.+.|.++..+.. +..-|..|.++....+++..|.+.|.+
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHh
Confidence 3455555555544321 334455556666666666666555543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.84 E-value=22 Score=29.74 Aligned_cols=203 Identities=12% Similarity=0.048 Sum_probs=104.5
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042941 172 TKSFNIILNGWCNIIGSSREAERVWMEMSQR-GICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVI 250 (481)
Q Consensus 172 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 250 (481)
...+......+. ..+.+..+...+...... ........+......+...+++..+...+.........+ ........
T Consensus 59 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 136 (291)
T COG0457 59 AGLLLLLALALL-KLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLA 136 (291)
T ss_pred hHHHHHHHHHHH-HcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHH
Confidence 344444555555 566666666666555431 112233444455555555666666666666665543222 12222222
Q ss_pred H-HHHcCCChHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchh
Q 042941 251 H-ALAKGRLVKDAISLMKSMEEKGV--APNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGE 327 (481)
Q Consensus 251 ~-~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 327 (481)
. .+...|+++.|...+........ ......+......+...++.+.+...+..........
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------- 200 (291)
T COG0457 137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD---------------- 200 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc----------------
Confidence 2 56666667777666666644211 0122222223333445566666666666655542110
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 328 EVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMK 407 (481)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 407 (481)
....+..+...+...++++.|...+......... ....+..+...+...|..+++...+.+..
T Consensus 201 ----------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 201 ----------------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred ----------------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 2345555556666666777777777776664211 13334444444446666777777777766
Q ss_pred HC
Q 042941 408 EK 409 (481)
Q Consensus 408 ~~ 409 (481)
..
T Consensus 264 ~~ 265 (291)
T COG0457 264 EL 265 (291)
T ss_pred Hh
Confidence 53
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.81 E-value=2.7 Score=23.96 Aligned_cols=28 Identities=18% Similarity=0.058 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYK 130 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~ 130 (481)
..+++.+...|...|++++|..++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3456666666666666666666666654
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=84.74 E-value=4.5 Score=30.09 Aligned_cols=56 Identities=11% Similarity=0.094 Sum_probs=35.5
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHH
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNI 177 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 177 (481)
..+.++.+...++.|++......+++|-+.+|+..|.++|+.++..+.+....|-.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y 123 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPY 123 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 34445555566667777777777777777777777777777766554444443433
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.51 E-value=17 Score=28.26 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=8.6
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 042941 185 IIGSSREAERVWMEMSQR 202 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~ 202 (481)
..|+|++|.++|+++.+.
T Consensus 56 ~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 56 ARGNYDEAARILRELLSS 73 (153)
T ss_pred HcCCHHHHHHHHHhhhcc
Confidence 444555555555444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.39 E-value=0.91 Score=35.39 Aligned_cols=107 Identities=7% Similarity=0.058 Sum_probs=69.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhH
Q 042941 351 LIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQF 430 (481)
Q Consensus 351 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 430 (481)
++..+.+.+.+..+..+++.+...+...+....+.++..|++.++.++..++++. .+..-...++..+.+.+.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 5667777888888888888888766556788888999999998877888877761 222333456667777777
Q ss_pred HHHHHHHHhhcCccCCCCccccccccccchhhccCcccc
Q 042941 431 VERQIASLKAHQPQSGQNTRVISKKSDQDREFLQQPETR 469 (481)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~r 469 (481)
.+++.-......... .+.. ++...+.+.+|.+.-
T Consensus 86 ~~~a~~Ly~~~~~~~-~al~----i~~~~~~~~~a~e~~ 119 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHD-EALE----ILHKLKDYEEAIEYA 119 (143)
T ss_dssp HHHHHHHHHCCTTHT-TCSS----TSSSTHCSCCCTTTG
T ss_pred HHHHHHHHHHcccHH-HHHH----HHHHHccHHHHHHHH
Confidence 777666555533322 1111 245566666666433
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=83.97 E-value=3.9 Score=22.03 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 381 SSYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
.+|..+...|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3567778888889999999988888765
|
... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=83.77 E-value=14 Score=26.55 Aligned_cols=60 Identities=12% Similarity=0.017 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 042941 363 NVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQD 423 (481)
Q Consensus 363 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 423 (481)
+..+-++.+...++.|++.+..+.+.+|.|.+++..|.++|+-.+.+ +.+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 55666666666777788888888888888888888888888777665 2233335555544
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.39 E-value=25 Score=30.64 Aligned_cols=95 Identities=16% Similarity=0.196 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH----HHHcCCCCCHHHHHHH-HHHHHcCCChHHHHHHHHHHHHc----CCCCChhhHH
Q 042941 212 SCIISCYSKARNLHKVLRLFDQ----MKRMGIECDRKVYNAV-IHALAKGRLVKDAISLMKSMEEK----GVAPNVVTYN 282 (481)
Q Consensus 212 ~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~ 282 (481)
..++..+.+.|.+.+|+.+.+. +.+.+.+|+..+...+ -.+|-...++.++..-+...+.. -.+|-...--
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 3467788999999999887654 4455556655444332 23444445555554444433321 1222222222
Q ss_pred HHHHHH--HhcCCHHHHHHHHHHHHH
Q 042941 283 SLIKPL--CKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 283 ~li~~~--~~~g~~~~a~~~~~~m~~ 306 (481)
-++++. |.-.++..|..+|-+..+
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHh
Confidence 233322 234456666666665544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.08 E-value=4.2 Score=21.95 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042941 105 TLLILIRRYCAVHDVGRAINAFYAYKR 131 (481)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 131 (481)
+|..+...+...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555556666666666655554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=82.76 E-value=44 Score=31.61 Aligned_cols=122 Identities=11% Similarity=-0.022 Sum_probs=71.5
Q ss_pred HHhcCCHHHHHHHH-HHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHH
Q 042941 113 YCAVHDVGRAINAF-YAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSRE 191 (481)
Q Consensus 113 ~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 191 (481)
....|+...|-+-+ ..+....-.|+... ..-..+...|+++.+.+.+............+...+++... +.|++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~-~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLH-GLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhh-chhhHHH
Confidence 33446655554333 33333222233322 22334556788888887776655444556667777787777 7888888
Q ss_pred HHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042941 192 AERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMG 238 (481)
Q Consensus 192 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 238 (481)
|...-..|....+. +...........-..|-++++...++++...+
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 88888877776655 33333322233344566777777777776554
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.77 E-value=9.2 Score=31.82 Aligned_cols=57 Identities=14% Similarity=0.106 Sum_probs=28.9
Q ss_pred HHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 042941 70 TMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYK 130 (481)
Q Consensus 70 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 130 (481)
..++.+.+.+...+++.+.+.-.+. .+.+...-..++..+|-.|++++|..-++-.-
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVka----kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKA----KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhc----CCccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 3444555555555555555554443 22223444455555555666666555554443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.29 E-value=0.59 Score=36.47 Aligned_cols=84 Identities=11% Similarity=0.212 Sum_probs=44.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 042941 214 IISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARK 293 (481)
Q Consensus 214 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 293 (481)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 3444555556666666666666554444566666666666666665555555551 112223345555555555
Q ss_pred HHHHHHHHHHH
Q 042941 294 LDEARQAFDEM 304 (481)
Q Consensus 294 ~~~a~~~~~~m 304 (481)
++++.-++..+
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555555543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.83 E-value=1.2e+02 Score=35.33 Aligned_cols=152 Identities=11% Similarity=0.007 Sum_probs=87.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCC--CCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHh
Q 042941 108 ILIRRYCAVHDVGRAINAFYAYKRFKFA--VGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNI 185 (481)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 185 (481)
.+..+-.+.+.+..|...++.-.....+ .....+-.+...|..-+++|....+..... .+...++.++. .. .
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~----a~~sl~~qil~-~e-~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF----ADPSLYQQILE-HE-A 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh----cCccHHHHHHH-HH-h
Confidence 4445556677788888888774211111 112234445558888888888777665311 12333443333 23 5
Q ss_pred cCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHcCCChHHHHH
Q 042941 186 IGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNA-VIHALAKGRLVKDAIS 264 (481)
Q Consensus 186 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~a~~ 264 (481)
.|++..|...|+.+.+.+.+ ...+++-++..-...|.++.+....+-..... .+....++. =+.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 78888888888888876322 35567767776667777777777665555432 233333332 2334456666666655
Q ss_pred HHH
Q 042941 265 LMK 267 (481)
Q Consensus 265 ~~~ 267 (481)
...
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 554
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.63 E-value=49 Score=32.37 Aligned_cols=131 Identities=11% Similarity=0.003 Sum_probs=81.8
Q ss_pred HHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHh
Q 042941 141 FQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSK 220 (481)
Q Consensus 141 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 220 (481)
.+.+...+-+.|..++|+.+- +|..-. ..... +.|+++.|.++..+.. +..-|..|.++...
T Consensus 617 rt~va~Fle~~g~~e~AL~~s--------~D~d~r---Felal-~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELS--------TDPDQR---FELAL-KLGRLDIAFDLAVEAN------SEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchHhhhhcC--------CChhhh---hhhhh-hcCcHHHHHHHHHhhc------chHHHHHHHHHHhh
Confidence 345666666777777776543 222211 12223 6778888777765543 55668888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 042941 221 ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQA 300 (481)
Q Consensus 221 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 300 (481)
.+++..|.+.|..... |..|+-.+...|+-+....+-....+.|.. |...-+|...|+++++.++
T Consensus 679 ~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHH
Confidence 8888888877765443 345666677777766655555555555432 3344456677888888877
Q ss_pred HHHH
Q 042941 301 FDEM 304 (481)
Q Consensus 301 ~~~m 304 (481)
+..-
T Consensus 744 Li~t 747 (794)
T KOG0276|consen 744 LIST 747 (794)
T ss_pred HHhc
Confidence 7543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=80.54 E-value=5.8 Score=21.24 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042941 105 TLLILIRRYCAVHDVGRAINAFYAYKR 131 (481)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 131 (481)
.+..+...+...|++++|+..|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444555556666666666666665554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.53 E-value=40 Score=29.66 Aligned_cols=71 Identities=8% Similarity=0.016 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHhHH
Q 042941 347 TYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK-----QLLPEPKTD 418 (481)
Q Consensus 347 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~~ 418 (481)
+++...+.|..+|.+.+|.++.++....+ +.+...|-.|+..+...|+--+|.+-++++.+. |+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 56677888999999999999999998864 347778889999999999988888887776442 666655543
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.30 E-value=3 Score=21.14 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=11.4
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 042941 385 ALIHALFLNGKLEEAHQYYM 404 (481)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~ 404 (481)
.+..++...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 44555566666666665543
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 481 | |||
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 1e-16 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-09 |
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 82.2 bits (201), Expect = 1e-16
Identities = 40/312 (12%), Positives = 95/312 (30%), Gaps = 23/312 (7%)
Query: 150 RYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVV 209
R + Q A L C + + L S + + SQ +
Sbjct: 69 RLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQ 128
Query: 210 SFSCIISCYSKARNL---HKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLM 266
C L H +L + ++ +YNAV+ A+ K+ + ++
Sbjct: 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVL 188
Query: 267 KSMEEKGVAPNVVTYNSLIKPLCKARKLDEA-RQAFDEMLQRGISPTIRTYHAFL---DI 322
+++ G+ P++++Y + ++ + + + + ++M Q G+ L D
Sbjct: 189 FMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
Query: 323 IRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSS 382
+ V + + P L++ + K+ + ++
Sbjct: 249 ATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQL 308
Query: 383 YTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWS----YNKQFVERQIASL 438
+E A + + EK LP + + ++ + R +
Sbjct: 309 ------------HMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRET 356
Query: 439 KAHQPQSGQNTR 450
K + R
Sbjct: 357 KNRLEREVYEGR 368
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 7e-09
Identities = 73/543 (13%), Positives = 166/543 (30%), Gaps = 119/543 (21%)
Query: 6 DILREF--SHKRSEMRNKIEECGIKV-SSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYA 62
DIL F + + +++ + S E + ++ ++ F W
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM-SKDAVSGTLRLF-WTLLSKQ-- 75
Query: 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRA 122
+ +V + + + L+ ++ + PS++T+ Y D
Sbjct: 76 --EEMVQ---KFVEEVLRINYKF-LMSPIKTEQRQPSMMTR--------MYIEQRDRLYN 121
Query: 123 INAFYAYKRFKFAVG-IEDFQGLLSALCRYKNVQDAE----HLMF-CNKDV--------F 168
N +A K+ V ++ + L AL ++ A+ + K +
Sbjct: 122 DNQVFA----KYNVSRLQPYLKLRQAL---LELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 169 PFNTK-SFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKA--RNLH 225
K F I W N+ + E V +EM Q+ + Y + S +S +H
Sbjct: 175 KVQCKMDFKIF---WLNL-KNCNSPETV-LEMLQK-LLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 226 ----KVLRLFDQ------------------MKRMGIEC-------DRKVYNAVIHALAKG 256
++ RL + C ++V + + A
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 257 RLVKDAISLMKSMEEKGVAPNVV--TYNSL------IKPL-CK--ARKLDEARQAFDEML 305
+ + E K + + L P A + + +D
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 306 QRGISPTIRTYHAFLDIIRTGE--EVFGLLESMRKMGCQPTNDTYIMLIKKFSR-WRQ-- 360
+ L+++ E ++F L +I S W
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP-------SAHIP-TILLSLIWFDVI 400
Query: 361 FGNVFKVWNEISENG---NGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417
+V V N++ + P S+ + I +++L K++ ++Y + + ++
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTIS--IPSIYLELKVKLENEYAL---HRSIVDHYNI 455
Query: 418 DELLQDWSYNKQFVERQIASLKAHQPQSGQNTRVISKKSD--QDREFLQQPETRRVVRHQ 475
+ ++++ S H ++ ++ ++ D FL+Q +RH
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK-----IRHD 510
Query: 476 GFS 478
+
Sbjct: 511 STA 513
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 481 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.75 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.71 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.71 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.7 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.7 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.66 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.66 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.63 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.6 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.6 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.59 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.59 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.59 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.59 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.58 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.56 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.55 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.54 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.53 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.49 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.49 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.48 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.48 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.46 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.46 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.46 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.45 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.44 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.43 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.43 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.42 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.4 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.39 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.39 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.35 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.33 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.32 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.31 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.29 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.26 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.25 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.24 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.23 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.22 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.21 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.18 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.15 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.15 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.14 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.1 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.05 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.04 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.01 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.99 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.98 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.97 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.95 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.95 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.94 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.93 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.93 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.93 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.89 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.89 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.89 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.89 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.88 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.86 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.86 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.85 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.84 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.83 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.81 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.79 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.78 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.76 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.73 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.72 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.72 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.68 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.67 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.63 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.63 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.6 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.6 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.58 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.58 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.56 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.56 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.55 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.55 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.55 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.54 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.53 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.53 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.53 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.53 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.52 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.5 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.49 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.49 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.49 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.48 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.48 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.46 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.46 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.44 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.43 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.43 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.43 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.38 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.38 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.37 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.35 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.35 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.34 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.34 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.31 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.3 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.28 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.28 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.27 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.27 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.26 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.25 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.21 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.2 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.19 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.16 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.15 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.14 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.13 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.13 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.12 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.09 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.09 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.09 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.06 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.97 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.96 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.95 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.95 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.91 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.87 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.86 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.86 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.86 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.85 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.85 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.84 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.8 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.79 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.79 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.72 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.65 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.65 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.65 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.63 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.62 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.6 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.5 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.46 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.46 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.34 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.33 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.31 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.3 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.29 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.28 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.19 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.08 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.94 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.63 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.6 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.5 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.48 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.43 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.43 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.35 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.27 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.23 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.17 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.14 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.01 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.75 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.58 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.31 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.27 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.27 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.64 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.6 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.34 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.33 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.11 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.55 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.53 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.37 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.28 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 92.99 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.74 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.71 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 91.93 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.77 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.01 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 90.38 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.2 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.52 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.97 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 88.58 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.19 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 87.39 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 84.86 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.03 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-34 Score=282.30 Aligned_cols=428 Identities=9% Similarity=-0.026 Sum_probs=296.0
Q ss_pred ChhHHHHHHHhcCCCCCHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 042941 14 KRSEMRNKIEECGIKVSSELVSEVLSWV--RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEM 91 (481)
Q Consensus 14 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 91 (481)
.|..++..+.. ..|+..++..+...+ .++.+.|..+|+.+... +++..+++.++.+|.+.|++++|.++|+++
T Consensus 102 ~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 176 (597)
T 2xpi_A 102 CAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGET 176 (597)
T ss_dssp HHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSS
T ss_pred HHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 55566666653 344556666665555 36677788877766422 467778888888888888888888888743
Q ss_pred hcC---------------CCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHH------------
Q 042941 92 RGG---------------ETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGL------------ 144 (481)
Q Consensus 92 ~~~---------------~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------ 144 (481)
... +.. .+..+|+.++.+|.+.|++++|+..|+++.+.+.. +...+..+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~ 252 (597)
T 2xpi_A 177 NPFRKDEKNANKLLMQDGGIK---LEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEW 252 (597)
T ss_dssp CTTC----------CCCSSCC---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHH
T ss_pred CCccccccccccccccccccc---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHH
Confidence 221 111 12677888888888888888888888887765421 23332222
Q ss_pred --------------------------HHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 042941 145 --------------------------LSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWME 198 (481)
Q Consensus 145 --------------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 198 (481)
+..|.+.|++++|.++|+++... +++..+++.++..+. +.|++++|..+|++
T Consensus 253 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~ 330 (597)
T 2xpi_A 253 DLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLF-VRSRFIDVLAITTK 330 (597)
T ss_dssp HHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHH-HhcCHHHHHHHHHH
Confidence 44555677777888888776554 567778888888888 78888888888888
Q ss_pred HHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh
Q 042941 199 MSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNV 278 (481)
Q Consensus 199 ~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 278 (481)
+.+.+.. +..++..++.++.+.|++++|..+++.+.+.. +.+..++..++.+|.+.|++++|.++|+++.+.... +.
T Consensus 331 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 407 (597)
T 2xpi_A 331 ILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FG 407 (597)
T ss_dssp HHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CH
Confidence 7766533 56677778888888888888888888877653 556777788888888888888888888887765432 56
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchh---HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042941 279 VTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGE---EVFGLLESMRKMGCQPTNDTYIMLIKKF 355 (481)
Q Consensus 279 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 355 (481)
.+|+.++.+|.+.|++++|.++|+++.+.+. .+..++..+..+|.+.+ ++.+.++.+.+.. +.+..+|+.++..|
T Consensus 408 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 485 (597)
T 2xpi_A 408 PAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVA 485 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 6788888888888888888888888776542 35667777777766554 4466666666553 44677788888888
Q ss_pred HhcCChhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhh
Q 042941 356 SRWRQFGNVFKVWNEISEN----GNGPD--RSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQ 429 (481)
Q Consensus 356 ~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 429 (481)
.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..++..+...+...|
T Consensus 486 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKK 564 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhC
Confidence 8888888888888877664 55666 6778888888888888888888888877654 335666776666665554
Q ss_pred HHH---HHHHHHhhcCccCCCCcccccccccc
Q 042941 430 FVE---RQIASLKAHQPQSGQNTRVISKKSDQ 458 (481)
Q Consensus 430 ~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~ 458 (481)
..+ +.++.+.+..|+++..+..++++|..
T Consensus 565 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 565 IPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 444 44455666677777777777766653
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=286.52 Aligned_cols=430 Identities=10% Similarity=-0.028 Sum_probs=357.3
Q ss_pred CCHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHH
Q 042941 29 VSSELVSEVLSWV--RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTL 106 (481)
Q Consensus 29 ~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~ 106 (481)
++...+..++..+ .+++++|+.+|+.+.. ..|+..++..++.+|.+.|++++|..+|+.+... .++ ..++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~ 153 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRS---SACR 153 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTC---HHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccc---hhHH
Confidence 4666777777776 4788999999999863 3478889999999999999999999999988643 345 8899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhc---------------CCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCc
Q 042941 107 LILIRRYCAVHDVGRAINAFYAYKRF---------------KFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFN 171 (481)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 171 (481)
+.++..|.+.|++++|+.+|+++... +.+++..+|+.++.+|.+.|++++|.++|+++....+.+
T Consensus 154 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 233 (597)
T 2xpi_A 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC 233 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchh
Confidence 99999999999999999999853321 223457889999999999999999999998865443334
Q ss_pred hHhHHHH--------------------------------------HHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHH
Q 042941 172 TKSFNII--------------------------------------LNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSC 213 (481)
Q Consensus 172 ~~~~~~l--------------------------------------~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 213 (481)
...+..+ +..|. +.|++++|.++|+++.+. +++..+++.
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 310 (597)
T 2xpi_A 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTS-HEDELRRAEDYLSSINGL--EKSSDLLLC 310 (597)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTT-THHHHHHHHHHHHTSTTG--GGCHHHHHH
T ss_pred hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHc-CcchHHHHHHHHHHhhcC--CchHHHHHH
Confidence 4433332 45566 788999999999988776 578999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 042941 214 IISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARK 293 (481)
Q Consensus 214 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 293 (481)
++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|..+++++.+... .+..+|+.++..|.+.|+
T Consensus 311 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 311 KADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNK 388 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999876 45788999999999999999999999999987643 478899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 042941 294 LDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGE---EVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNE 370 (481)
Q Consensus 294 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 370 (481)
+++|.++|+++.+.. +.+..++..++..+.+.+ ++.++++.+.+.+ +.+..++..++.+|.+.|++++|.++|++
T Consensus 389 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 389 ISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998754 236778999999887765 4577777777654 55788999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HhHHHHHHHHHhhhhHHHHHHH---HHhhc
Q 042941 371 ISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK----QLLPE--PKTDELLQDWSYNKQFVERQIA---SLKAH 441 (481)
Q Consensus 371 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~~~~~~~~~---~~~~~ 441 (481)
+.+... .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..++..+...+...|..+++.+ .+.+.
T Consensus 467 ~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 467 SYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 988643 47899999999999999999999999999876 67888 6788888888877777665554 55667
Q ss_pred CccCCCCccccccccccchhhccCccccchhcc
Q 042941 442 QPQSGQNTRVISKKSDQDREFLQQPETRRVVRH 474 (481)
Q Consensus 442 ~~~~~~~~~~l~~~~~~~~~~~~a~~~r~~~~~ 474 (481)
.|+++..+..++.+|...|++++|.+..+.+-+
T Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 546 STNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 788889999999999999999999887665543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-32 Score=257.21 Aligned_cols=219 Identities=12% Similarity=0.109 Sum_probs=185.8
Q ss_pred hHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHH
Q 042941 82 DTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM 161 (481)
Q Consensus 82 ~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 161 (481)
..+..+.+.+.++++.+.+ ...++.+|.+|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+....+
T Consensus 7 s~~e~L~~~~~~k~~~~sp--e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~---- 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSP--EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES---- 80 (501)
T ss_dssp -----------------CH--HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS----
T ss_pred chHHHHHHHHHHhcccCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh----
Confidence 3466677778777776652 3468889999999999999999999999999999999999999999887754321
Q ss_pred hhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 042941 162 FCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIEC 241 (481)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 241 (481)
. +.+.++.|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.|
T Consensus 81 ---------------------~-~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P 138 (501)
T 4g26_A 81 ---------------------S-PNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP 138 (501)
T ss_dssp ---------------------S-CCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC
T ss_pred ---------------------h-hcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Confidence 2 456678999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042941 242 DRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLD 321 (481)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 321 (481)
|..+|+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|.+.+..|+..||+.++.
T Consensus 139 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~ 218 (501)
T 4g26_A 139 RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEE 218 (501)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHH
T ss_pred ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhchhH
Q 042941 322 IIRTGEE 328 (481)
Q Consensus 322 ~~~~~~~ 328 (481)
.++..+.
T Consensus 219 ~F~s~~a 225 (501)
T 4g26_A 219 WFKSEVA 225 (501)
T ss_dssp HHHSHHH
T ss_pred HHhcCcc
Confidence 9887543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=254.07 Aligned_cols=207 Identities=16% Similarity=0.239 Sum_probs=170.0
Q ss_pred HHHHHHHHHHhcCCcccH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC---------hH
Q 042941 191 EAERVWMEMSQRGICYDV-VSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRL---------VK 260 (481)
Q Consensus 191 ~a~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~ 260 (481)
.+..+.+.+.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 445555666666655433 45778889999999999999999999998999999999999998887654 67
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcC
Q 042941 261 DAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMG 340 (481)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~ 340 (481)
.|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~------------------------------- 136 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI------------------------------- 136 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-------------------------------
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------------------------------
Confidence 8899999999999999999999999999999999999999988887764
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 042941 341 CQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDEL 420 (481)
Q Consensus 341 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 420 (481)
.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.
T Consensus 137 -~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~ 215 (501)
T 4g26_A 137 -QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDM 215 (501)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHH
T ss_pred -CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 5667788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhh
Q 042941 421 LQDWSYNKQ 429 (481)
Q Consensus 421 l~~~~~~~~ 429 (481)
+..++...+
T Consensus 216 l~~~F~s~~ 224 (501)
T 4g26_A 216 IEEWFKSEV 224 (501)
T ss_dssp HHHHHHSHH
T ss_pred HHHHHhcCc
Confidence 999887653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-26 Score=212.01 Aligned_cols=353 Identities=14% Similarity=0.095 Sum_probs=271.8
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
.++.+.|.+.+..+.... +.+...+..+...+...|++++|...++...+. ++.+..+|..+...+...|++++
T Consensus 12 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~----~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ----NPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHHCCCHHH
Confidence 578899999998886544 245677888888889999999999999988775 34448899999999999999999
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQ 201 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 201 (481)
|+..|+++.+.. +.+..+|..+..++...|++++|...|.+.....|.+...+..+...+. ..|++++|...|+++..
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK-ALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH-TTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHH
Confidence 999999998754 3356678899999999999999999998865555556667777888888 89999999999999887
Q ss_pred cCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhH
Q 042941 202 RGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTY 281 (481)
Q Consensus 202 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 281 (481)
.... +..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...|++..+..+. +..++
T Consensus 164 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 240 (388)
T 1w3b_A 164 TQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVH 240 (388)
T ss_dssp HCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHH
T ss_pred hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHH
Confidence 6433 56788889999999999999999999998875 456778888999999999999999999998876543 67888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhch---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 042941 282 NSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTG---EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRW 358 (481)
Q Consensus 282 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 358 (481)
..+...|...|++++|...|+++.+.+.. +..++..+...+.+. .++...++.+.+.. +.+..++..+...+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHc
Confidence 88999999999999999999999886421 344555555554443 33345555554442 45566666777777777
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 359 RQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 359 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
|++++|...++++.+.. +.+..++..+...|.+.|++++|...|+++.+
T Consensus 319 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777777777766542 23455666777777777777777777777665
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-24 Score=198.85 Aligned_cols=366 Identities=11% Similarity=0.029 Sum_probs=299.1
Q ss_pred ChhHHHHHHHhcCCCCCHHHHHHHHHHh---hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHH
Q 042941 14 KRSEMRNKIEECGIKVSSELVSEVLSWV---RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDE 90 (481)
Q Consensus 14 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 90 (481)
.|...+..+.+. .|+......++..+ .++.+.|..+++...... +.+..+|..+...+.+.|++++|...|++
T Consensus 17 ~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 92 (388)
T 1w3b_A 17 AAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRH 92 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455555555433 23333333333332 588899999999887544 36789999999999999999999999999
Q ss_pred HhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCC
Q 042941 91 MRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPF 170 (481)
Q Consensus 91 ~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 170 (481)
+.+. ++....+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...|+++....|.
T Consensus 93 al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 167 (388)
T 1w3b_A 93 ALRL----KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167 (388)
T ss_dssp HHHH----CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHc----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 9876 33347789999999999999999999999999865 224566778889999999999999999987665667
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042941 171 NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVI 250 (481)
Q Consensus 171 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 250 (481)
+..+|+.+...+. ..|++++|...|+++...+.. +...+..+...+...|++++|...+++..... +.+..++..+.
T Consensus 168 ~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 244 (388)
T 1w3b_A 168 FAVAWSNLGCVFN-AQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLA 244 (388)
T ss_dssp CHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHH
Confidence 7889999999999 999999999999999887543 56788899999999999999999999998874 44688999999
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHH-
Q 042941 251 HALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEV- 329 (481)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~- 329 (481)
.++...|++++|...|+++.+.++. +..+|..+...+.+.|++++|...|+++.+.. +.+..++..+...+...++.
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999987543 67789999999999999999999999998864 35778888888888776555
Q ss_pred --HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042941 330 --FGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGK 395 (481)
Q Consensus 330 --~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (481)
...++.+.+.. +.+..++..+...+.+.|++++|...++++.+... .+...|..+...+...|+
T Consensus 323 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 323 EAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHhHHHHHHHccC
Confidence 55555555542 45678999999999999999999999999988532 356678888777776653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-22 Score=192.27 Aligned_cols=314 Identities=11% Similarity=0.058 Sum_probs=249.8
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHH
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQ 142 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (481)
.+...+..+...+.+.|++++|..+|+.+.+. ++.+..++..+...+...|++++|+..|+.+.+.+ +.+..++.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 98 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARL 98 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHH
Confidence 46788999999999999999999999998875 33348889999999999999999999999998865 34677888
Q ss_pred HHHHHHHcCCChhhHHHHHhhccCCCCCch---HhHHHHHH------------HHHHhcCCHHHHHHHHHHHHhcCCccc
Q 042941 143 GLLSALCRYKNVQDAEHLMFCNKDVFPFNT---KSFNIILN------------GWCNIIGSSREAERVWMEMSQRGICYD 207 (481)
Q Consensus 143 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~------------~~~~~~~~~~~a~~~~~~~~~~g~~~~ 207 (481)
.+..+|...|++++|...|+++....+.+. ..+..+.. .+. ..|++++|...|+.+...... +
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~-~ 176 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF-GSGDYTAAIAFLDKILEVCVW-D 176 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC-C
Confidence 899999999999999999998766555555 66665543 377 788999999999888776433 6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHH---
Q 042941 208 VVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSL--- 284 (481)
Q Consensus 208 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--- 284 (481)
..++..+..+|.+.|++++|...|+.+.+.. +.+..++..+..+|...|++++|...|+++.+.... +...+..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~ 254 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHH
Confidence 6778888888889999999999998888764 557788888888899999999999999888876432 34444444
Q ss_pred ---------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042941 285 ---------IKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKF 355 (481)
Q Consensus 285 ---------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 355 (481)
...+...|++++|...|+++.+.. |+...+ ....+..+...+
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~---------------------------~~~~~~~l~~~~ 305 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEY---------------------------TVRSKERICHCF 305 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHH---------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHH---------------------------HHHHHHHHHHHH
Confidence 677888888888888888877642 221100 024677888999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 042941 356 SRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417 (481)
Q Consensus 356 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 417 (481)
.+.|++++|...++++.+.. +.+...|..+..+|...|++++|...|+++.+ +.|+...
T Consensus 306 ~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~ 364 (450)
T 2y4t_A 306 SKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQ 364 (450)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHH
Confidence 99999999999999988753 23688999999999999999999999999987 4565543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.9e-21 Score=181.69 Aligned_cols=360 Identities=11% Similarity=0.015 Sum_probs=275.6
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHh
Q 042941 83 TAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMF 162 (481)
Q Consensus 83 ~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 162 (481)
.+...+.++... ++.+...+..+...+...|++++|+..|+.+.+.. +.+..++..+..++...|++++|...|+
T Consensus 10 ~~~~~~~~~~~~----~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 84 (450)
T 2y4t_A 10 GVDLGTENLYFQ----SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLT 84 (450)
T ss_dssp -----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccccc----cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444444443 55568899999999999999999999999998764 4478899999999999999999999999
Q ss_pred hccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccH---HhHHHH------------HHHHHhcCCHHHH
Q 042941 163 CNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDV---VSFSCI------------ISCYSKARNLHKV 227 (481)
Q Consensus 163 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------l~~~~~~~~~~~a 227 (481)
++....|.+...+..+...+. ..|++++|...|+.+...... +. ..+..+ ...+...|++++|
T Consensus 85 ~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 85 KVIQLKMDFTAARLQRGHLLL-KQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 876656677889999999999 999999999999999886432 33 455444 4458899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 228 LRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
...|+.+.+.. +.+..++..+..+|.+.|++++|..+|+++.+... .+..+|..+...|...|++++|...|+++.+.
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999875 56788999999999999999999999999987644 37889999999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-----HHH
Q 042941 308 GISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPD-----RSS 382 (481)
Q Consensus 308 ~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~ 382 (481)
. |+.......+.... ....+..+...|...|++++|...|+++.+.. |+ ...
T Consensus 241 ~--p~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~ 297 (450)
T 2y4t_A 241 D--QDHKRCFAHYKQVK-------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRS 297 (450)
T ss_dssp C--TTCHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHH
T ss_pred C--CChHHHHHHHHHHH-------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHH
Confidence 3 44333222221110 01133446788999999999999999998843 44 457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHHH---HHHHHHhhcCccCCCCccccc------
Q 042941 383 YTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVE---RQIASLKAHQPQSGQNTRVIS------ 453 (481)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~------ 453 (481)
|..+...+.+.|++++|+..++++.+.. +.+...+..+...+...|..+ ..++.+.+..|+++..+..++
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 376 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLL 376 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHh
Confidence 8889999999999999999999988752 235677777777666655555 555666677888888888888
Q ss_pred ------cccccch--hhccCccccchhccc
Q 042941 454 ------KKSDQDR--EFLQQPETRRVVRHQ 475 (481)
Q Consensus 454 ------~~~~~~~--~~~~a~~~r~~~~~~ 475 (481)
.+|...| ++....++++.+++.
T Consensus 377 ~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 377 KQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred hcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 7777777 444556666666553
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-20 Score=181.80 Aligned_cols=396 Identities=9% Similarity=-0.015 Sum_probs=230.8
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
.++++.|+..|+.+.... |+..+|..+..++.+.|++++|...|+.+.+. ++.+..++..+..++...|++++
T Consensus 19 ~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL----KPDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc----ChHHHHHHHHHHHHHHHHhhHHH
Confidence 588999999999997554 68999999999999999999999999999886 33457899999999999999999
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHH--------------------------------------Hhh
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHL--------------------------------------MFC 163 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~--------------------------------------~~~ 163 (481)
|...|+.+.+.+. ++......++..+........+.+. +..
T Consensus 92 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
T 2gw1_A 92 AMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI 170 (514)
T ss_dssp HHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTT
T ss_pred HHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhh
Confidence 9999999987653 2333333333222221111111000 000
Q ss_pred ccCC-------CCCchHhHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----c--CC------cccHHhHHHHHHHHHh
Q 042941 164 NKDV-------FPFNTKSFNIILNGWCNI---IGSSREAERVWMEMSQ-----R--GI------CYDVVSFSCIISCYSK 220 (481)
Q Consensus 164 ~~~~-------~~~~~~~~~~l~~~~~~~---~~~~~~a~~~~~~~~~-----~--g~------~~~~~~~~~ll~~~~~ 220 (481)
.... .+.+...+......+. . .|++++|...|+++.. . .. +.+..++..+...+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (514)
T 2gw1_A 171 FKPELTFANYDESNEADKELMNGLSNL-YKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249 (514)
T ss_dssp SCCCCCCSSCCSSCHHHHHHHHHHHHH-SSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHhcCCcHHHHHHHHHHHHH-HhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence 0000 0112333333333333 3 5666666666666655 2 10 1234455566666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 042941 221 ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQA 300 (481)
Q Consensus 221 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 300 (481)
.|++++|...++.+.+.+ |+...+..+..++...|++++|...++++.+.... +...+..+...|...|++++|...
T Consensus 250 ~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 326 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKD 326 (514)
T ss_dssp SSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHH
T ss_pred CCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 666666666666666653 22556666666666666666666666666655332 455566666666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhchh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 042941 301 FDEMLQRGISPTIRTYHAFLDIIRTGE---EVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNG 377 (481)
Q Consensus 301 ~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 377 (481)
+++..+.... +...+..+...+...+ ++...++.+.+.. +.+..++..+...+...|++++|...++++.+....
T Consensus 327 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 327 FDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp HHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 6666654322 3344444555544433 3344444444432 234455666666666667777777666666542111
Q ss_pred -CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHHH---HHHHHHhhcCccCC
Q 042941 378 -PD----RSSYTALIHALFL---NGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVE---RQIASLKAHQPQSG 446 (481)
Q Consensus 378 -~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~ 446 (481)
++ ...|..+...+.. .|++++|...++++.... +.+..++..+...+...|..+ ..++...+..|.++
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTME 483 (514)
T ss_dssp SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence 11 2356666666666 677777777766666532 123334444444444443333 33344445555554
Q ss_pred CCcccc
Q 042941 447 QNTRVI 452 (481)
Q Consensus 447 ~~~~~l 452 (481)
..+..+
T Consensus 484 ~~~~~~ 489 (514)
T 2gw1_A 484 EKLQAI 489 (514)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-20 Score=179.00 Aligned_cols=397 Identities=11% Similarity=-0.064 Sum_probs=300.3
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHH
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGL 144 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 144 (481)
...+......+.+.|++++|...|+++.+.. |+ ..++..+..++...|++++|+..++.+.+.+ +.+..++..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 79 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--ED---PVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRR 79 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cc---HHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHH
Confidence 4567788889999999999999999999874 56 8899999999999999999999999999865 3467889999
Q ss_pred HHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----------------------
Q 042941 145 LSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR---------------------- 202 (481)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~---------------------- 202 (481)
..++...|++++|...|+.+....+++......++..+. .......+.+.+..+...
T Consensus 80 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 80 ASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNL-NKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHH-HHHHHHHHTTC---------------------------CC
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 999999999999999999876555556555555555544 333333332222111100
Q ss_pred -------------CC---------cccHHhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----cCC--------CCCHH
Q 042941 203 -------------GI---------CYDVVSFSCIISCYSK---ARNLHKVLRLFDQMKR-----MGI--------ECDRK 244 (481)
Q Consensus 203 -------------g~---------~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~ 244 (481)
.. +.+...+......+.. .|++++|...|+.+.+ ..- +.+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 00 1113344444444444 8999999999999988 311 22456
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 042941 245 VYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIR 324 (481)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 324 (481)
++..+...+...|++++|...|+++.+.... ...+..+...+...|++++|...++.+.+.... +...+..+...+.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHH
Confidence 7888999999999999999999999987544 888899999999999999999999999886532 4556666666665
Q ss_pred ch---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042941 325 TG---EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQ 401 (481)
Q Consensus 325 ~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 401 (481)
.. +++...++...+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+.+.|++++|..
T Consensus 316 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHH
Confidence 54 56677777777654 34567888999999999999999999999987532 356788999999999999999999
Q ss_pred HHHHHHHCCCC-CC----HhHHHHHHHHHhh---hhHHHHHH---HHHhhcCccCCCCccccccccccchhhccCccccc
Q 042941 402 YYMEMKEKQLL-PE----PKTDELLQDWSYN---KQFVERQI---ASLKAHQPQSGQNTRVISKKSDQDREFLQQPETRR 470 (481)
Q Consensus 402 ~~~~m~~~~~~-p~----~~~~~~l~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~r~ 470 (481)
.++++.+.... ++ ...+..+...+.. .|..+++. +...+..|+++..+..++.+|...|++++|.+..+
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99998774211 22 2266666666666 66666554 55566778888888999999999999999987665
Q ss_pred hhc
Q 042941 471 VVR 473 (481)
Q Consensus 471 ~~~ 473 (481)
..-
T Consensus 474 ~a~ 476 (514)
T 2gw1_A 474 ESA 476 (514)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.2e-19 Score=161.00 Aligned_cols=313 Identities=10% Similarity=0.036 Sum_probs=240.6
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHH
Q 042941 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQG 143 (481)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (481)
++..+..+...+...|++++|...|+.+.+. ++.+..++..+...+...|++++|+..++.+.+.. +.+...+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 76 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQ 76 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHH
Confidence 4567778888888889999999999888775 33347788888888888899999999998888754 235677888
Q ss_pred HHHHHHcCCChhhHHHHHhhccCCCC---CchHhHHHH------------HHHHHHhcCCHHHHHHHHHHHHhcCCcccH
Q 042941 144 LLSALCRYKNVQDAEHLMFCNKDVFP---FNTKSFNII------------LNGWCNIIGSSREAERVWMEMSQRGICYDV 208 (481)
Q Consensus 144 ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 208 (481)
+..++...|++++|...|++.....| .+...+..+ ...+. ..|++++|...++.+.+.... +.
T Consensus 77 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~-~~ 154 (359)
T 3ieg_A 77 RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAF-DGADYTAAITFLDKILEVCVW-DA 154 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCC-ch
Confidence 88888888999999888888666555 455555554 46677 889999999999988876433 66
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHH------
Q 042941 209 VSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYN------ 282 (481)
Q Consensus 209 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~------ 282 (481)
..+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|+...+.... +...+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~ 232 (359)
T 3ieg_A 155 ELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVK 232 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHH
Confidence 778888888899999999999999888764 557788888888899999999999999888876433 333332
Q ss_pred ------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042941 283 ------SLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFS 356 (481)
Q Consensus 283 ------~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 356 (481)
.+...+...|++++|...+++..+.. |+...+ ....+..+...+.
T Consensus 233 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~---------------------------~~~~~~~la~~~~ 283 (359)
T 3ieg_A 233 KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEY---------------------------TVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHH---------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHH---------------------------HHHHHHHHHHHHH
Confidence 22556778889999988888877653 221100 0123556778899
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 042941 357 RWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417 (481)
Q Consensus 357 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 417 (481)
..|++++|...+++..+.. +.+...|..+...+.+.|++++|...|++..+. .|+...
T Consensus 284 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~ 341 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQ 341 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHH
T ss_pred HccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChH
Confidence 9999999999999998853 237889999999999999999999999999874 565433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.7e-20 Score=178.10 Aligned_cols=388 Identities=8% Similarity=0.030 Sum_probs=236.9
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
.++.+.|+..|+.+.... +.+..+|..+..++.+.|++++|.+.|+++.+. ++.+..++..+...+...|++++
T Consensus 38 ~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 38 AKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEI----KPDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp TTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred hccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHHcCCHHH
Confidence 366678888888886655 356788888888888888888888888888775 33347788888888888888888
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCC-------CCCchH---------------------
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDV-------FPFNTK--------------------- 173 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~--------------------- 173 (481)
|+..|+.+ .. .|+.. ...+..+...+....|...++..... ..|+..
T Consensus 112 A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 112 AMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp HHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred HHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 88888633 22 22221 11222333333445555555543221 011111
Q ss_pred ---------hHHHHHHHHH-------HhcCCHHHHHHHHHHHHhcCCccc------HHhHHHHHHHHHhcCCHHHHHHHH
Q 042941 174 ---------SFNIILNGWC-------NIIGSSREAERVWMEMSQRGICYD------VVSFSCIISCYSKARNLHKVLRLF 231 (481)
Q Consensus 174 ---------~~~~l~~~~~-------~~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~ll~~~~~~~~~~~a~~~~ 231 (481)
....+...+. ...+++++|..+++.+.+...... ..++..+...+...|++++|...+
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 266 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL 266 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 1122222111 012477888888888877633311 234666667788888999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042941 232 DQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISP 311 (481)
Q Consensus 232 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 311 (481)
+.+.+. .|+...+..+...+...|++++|...|+++.+.... +..++..+...+...|++++|...+++..+....
T Consensus 267 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~- 342 (537)
T 3fp2_A 267 QESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE- 342 (537)
T ss_dssp HHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-
Confidence 888886 355778888888888899999999999988876543 6778888888888899999999999888775422
Q ss_pred CHHHHHHHHHHHhchh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----CCCHHHH
Q 042941 312 TIRTYHAFLDIIRTGE---EVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGN-----GPDRSSY 383 (481)
Q Consensus 312 ~~~~~~~li~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~ 383 (481)
+...+..+...+...+ ++...++...+.. +.+...+..+...+...|++++|...++++.+... ......+
T Consensus 343 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 421 (537)
T 3fp2_A 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPL 421 (537)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHH
Confidence 3344555555554433 3455555555443 33455667777777777777777777777655211 1112223
Q ss_pred HHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHHHHHHH---HHhhcCccCC
Q 042941 384 TALIHALFLN----------GKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQIA---SLKAHQPQSG 446 (481)
Q Consensus 384 ~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~ 446 (481)
......+.+. |++++|...|+++.+.. +.+...+..+...+...|..+++.+ ...+..|..+
T Consensus 422 ~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 422 IGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp HHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 3444556666 77777777777776642 2234445555555555555554443 3334444433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-18 Score=168.84 Aligned_cols=385 Identities=10% Similarity=0.010 Sum_probs=272.5
Q ss_pred CChhHHHHHHHhcCCCCCHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHH
Q 042941 13 HKRSEMRNKIEECGIKVSSELVSEVLSWV--RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDE 90 (481)
Q Consensus 13 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 90 (481)
+.|...++...+..+ -++..+..+...+ .++.+.|+..|+.+.... +.+..++..+..++...|++++|...|+.
T Consensus 42 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 118 (537)
T 3fp2_A 42 NEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDLSV 118 (537)
T ss_dssp C-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 477777777765542 2455555444444 589999999999997544 24788999999999999999999999974
Q ss_pred HhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC------CCCCHH-------------------------
Q 042941 91 MRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFK------FAVGIE------------------------- 139 (481)
Q Consensus 91 ~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~------------------------- 139 (481)
+ .. .|+ .....+..+...+....|...++.+.... ..|+..
T Consensus 119 ~-~~--~~~-----~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (537)
T 3fp2_A 119 L-SL--NGD-----FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190 (537)
T ss_dssp H-C------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred H-hc--CCC-----CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence 4 33 233 22223444555566677888888775431 112211
Q ss_pred -----hHHHHHHHHHcC--------CChhhHHHHHhhccCCCCCchH-------hHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 140 -----DFQGLLSALCRY--------KNVQDAEHLMFCNKDVFPFNTK-------SFNIILNGWCNIIGSSREAERVWMEM 199 (481)
Q Consensus 140 -----~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~a~~~~~~~ 199 (481)
....+...+... |++++|..+++.+....|.+.. ++..+...+. ..|++++|...++..
T Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~~ 269 (537)
T 3fp2_A 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF-LKNNLLDAQVLLQES 269 (537)
T ss_dssp SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHH-hcccHHHHHHHHHHH
Confidence 122222222222 4788899999887665555543 4556667777 889999999999999
Q ss_pred HhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChh
Q 042941 200 SQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVV 279 (481)
Q Consensus 200 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (481)
... .|+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|+++.+.... +..
T Consensus 270 ~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~ 345 (537)
T 3fp2_A 270 INL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVY 345 (537)
T ss_dssp HHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSH
T ss_pred Hhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHH
Confidence 886 4557788888899999999999999999998875 557888999999999999999999999999887544 667
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchh---HHHHHHHHHHHcC-----CCCCHHHHHHH
Q 042941 280 TYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGE---EVFGLLESMRKMG-----CQPTNDTYIML 351 (481)
Q Consensus 280 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~l 351 (481)
.+..+...|...|++++|...++++.+... .+...+..+...+...+ ++...++...+.. .......+...
T Consensus 346 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 424 (537)
T 3fp2_A 346 PYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGK 424 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHH
Confidence 888899999999999999999999887642 24456666666665544 4455555544331 11223334555
Q ss_pred HHHHHhc----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 042941 352 IKKFSRW----------RQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417 (481)
Q Consensus 352 ~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 417 (481)
...+... |++++|...+++..+... .+...+..+...|.+.|++++|.+.|++..+. .|+...
T Consensus 425 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~ 497 (537)
T 3fp2_A 425 ATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL--ARTMDE 497 (537)
T ss_dssp HHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C--CHH
T ss_pred HHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHH
Confidence 6677777 999999999999988643 46788999999999999999999999999875 344433
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-17 Score=151.09 Aligned_cols=307 Identities=12% Similarity=0.038 Sum_probs=249.1
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
.++.+.|+..|+.+.... +.+..++..+...+...|++++|...|+.+.+. ++.+..++..+...+...|++++
T Consensus 16 ~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~ 89 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL----KMDFTAARLQRGHLLLKQGKLDE 89 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred cCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCcchHHHHHHHHHHHcCChHH
Confidence 588999999999997544 246889999999999999999999999999876 33347899999999999999999
Q ss_pred HHHHHHHHhhcCCC--CCHHhHHHH------------HHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcC
Q 042941 122 AINAFYAYKRFKFA--VGIEDFQGL------------LSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIG 187 (481)
Q Consensus 122 a~~~~~~~~~~~~~--~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 187 (481)
|...|+.+.+.... .+...+..+ ...+...|++++|...++.+....|.+...+..+...+. ..|
T Consensus 90 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 168 (359)
T 3ieg_A 90 AEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI-KEG 168 (359)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HCC
Confidence 99999999876420 234444444 578899999999999999976666778889999999999 999
Q ss_pred CHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH------------HHHHHHHc
Q 042941 188 SSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYN------------AVIHALAK 255 (481)
Q Consensus 188 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~li~~~~~ 255 (481)
++++|...++........ +..++..+...+...|++++|...++...+.. +.+...+. .+...+.+
T Consensus 169 ~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 246 (359)
T 3ieg_A 169 EPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIR 246 (359)
T ss_dssp CHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887433 67889999999999999999999999998864 33444333 23667899
Q ss_pred CCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHH
Q 042941 256 GRLVKDAISLMKSMEEKGVAPNV----VTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFG 331 (481)
Q Consensus 256 ~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 331 (481)
.|++++|...++++.+.... +. ..+..+...+...|++++|...+++..+..
T Consensus 247 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----------------------- 302 (359)
T 3ieg_A 247 DGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME----------------------- 302 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred cCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------------------
Confidence 99999999999999886543 23 234457788999999999999999987752
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042941 332 LLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFL 392 (481)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (481)
+.+..++..+...+...|++++|...+++..+... .+...+..+..+...
T Consensus 303 ----------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 303 ----------PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQQIREGLEKAQRL 352 (359)
T ss_dssp ----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHH
T ss_pred ----------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHH
Confidence 33567888899999999999999999999998642 245566666655443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-18 Score=155.41 Aligned_cols=286 Identities=13% Similarity=0.001 Sum_probs=173.5
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHH
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQ 142 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (481)
.+...+..+...+...|++++|.++|+++.+. ++.+...+..++..+...|++++|...++++.+.. +.+...+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 94 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK----DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWF 94 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 45566667777777777777777777777665 22234556666667777777777777777777643 23455666
Q ss_pred HHHHHHHcCC-ChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhc
Q 042941 143 GLLSALCRYK-NVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKA 221 (481)
Q Consensus 143 ~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 221 (481)
.+...+...| ++++|...|++.....+.+...+..+...+. ..|++++|...++...+.... +...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFA-VESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 6667777777 6777777776655545555666666666666 677777777777766655332 234455566666667
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC--------CCCChhhHHHHHHHHHhcCC
Q 042941 222 RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKG--------VAPNVVTYNSLIKPLCKARK 293 (481)
Q Consensus 222 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~ 293 (481)
|++++|...++...+.. +.+...+..+...+...|++++|...++++.+.. .+.+..++..+...|...|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 77777777776666653 3455666666666666666666666666665431 02233455556666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042941 294 LDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISE 373 (481)
Q Consensus 294 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 373 (481)
+++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+
T Consensus 252 ~~~A~~~~~~a~~~~---------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 252 YAEALDYHRQALVLI---------------------------------PQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHHHS---------------------------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhhC---------------------------------ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 666666666555431 11233455555555666666666666665554
Q ss_pred CCCCCCHHHHHHHHHHH
Q 042941 374 NGNGPDRSSYTALIHAL 390 (481)
Q Consensus 374 ~~~~~~~~~~~~l~~~~ 390 (481)
... .+...+..+..++
T Consensus 299 ~~p-~~~~~~~~l~~~~ 314 (330)
T 3hym_B 299 LRR-DDTFSVTMLGHCI 314 (330)
T ss_dssp TCS-CCHHHHHHHHHHH
T ss_pred cCC-CchHHHHHHHHHH
Confidence 321 2444555555544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-17 Score=151.09 Aligned_cols=291 Identities=9% Similarity=0.011 Sum_probs=236.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGW 182 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (481)
...+..+...+...|++++|+.+|+.+.+.. +.+...+..++.++...|++++|..+++++....|.+...+..+...+
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYY 100 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 5577788888899999999999999998765 345667777888999999999999999987666667888899999999
Q ss_pred HHhcC-CHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHH
Q 042941 183 CNIIG-SSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKD 261 (481)
Q Consensus 183 ~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (481)
. ..| ++++|...|+........ +...|..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++
T Consensus 101 ~-~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 101 L-MVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp H-HSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred H-HhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 9 889 999999999999877433 56678889999999999999999999998875 4456777889999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCC
Q 042941 262 AISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGC 341 (481)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~ 341 (481)
|...++++.+.... +...+..+...+...|++++|...+++..+...... .....
T Consensus 178 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------------------~~~~~ 232 (330)
T 3hym_B 178 AERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG------------------------NEVTV 232 (330)
T ss_dssp HHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS------------------------CSCTT
T ss_pred HHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc------------------------ccccc
Confidence 99999999887543 678889999999999999999999998766311000 00011
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHH
Q 042941 342 QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPE-PKTDEL 420 (481)
Q Consensus 342 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ 420 (481)
+....++..+...+...|++++|...+++..+... .+...|..+...+.+.|++++|.+.|++..+. .|+ ...+..
T Consensus 233 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 309 (330)
T 3hym_B 233 DKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTM 309 (330)
T ss_dssp TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHH
Confidence 33456888999999999999999999999988643 36778999999999999999999999998764 454 444444
Q ss_pred HHHHH
Q 042941 421 LQDWS 425 (481)
Q Consensus 421 l~~~~ 425 (481)
+...+
T Consensus 310 l~~~~ 314 (330)
T 3hym_B 310 LGHCI 314 (330)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.8e-18 Score=155.19 Aligned_cols=298 Identities=12% Similarity=-0.019 Sum_probs=227.0
Q ss_pred cCHHHHHH-HHHHhhhCCCCCC--CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCH
Q 042941 43 NDWEAAFT-FFLWAGKQSGYAH--STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDV 119 (481)
Q Consensus 43 ~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~ 119 (481)
++.+.|+. .++.......-.| +...+..+...+.+.|++++|...|+.+.+. ++.+..++..+...+...|++
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ----DPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS----CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCcCH
Confidence 56677887 7776653322222 4567888999999999999999999999886 334488999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHH---------------HHHHHHH
Q 042941 120 GRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNI---------------ILNGWCN 184 (481)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~ 184 (481)
++|+..|+++.+.+ +.+..++..+..++...|++++|...+++.....+.+...+.. .+..+.
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 192 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL- 192 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence 99999999998865 3477889999999999999999999998865444444444332 245556
Q ss_pred hcCCHHHHHHHHHHHHhcCCcc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 042941 185 IIGSSREAERVWMEMSQRGICY-DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAI 263 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 263 (481)
..|++++|...++.+....... +..++..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 7899999999999988764332 47788889999999999999999999998874 556788999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCC
Q 042941 264 SLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQP 343 (481)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~ 343 (481)
..|+++.+..+ .+...+..+...|...|++++|...|++..+........ .....+.
T Consensus 272 ~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------------~~~~~~~ 328 (368)
T 1fch_A 272 AAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP----------------------RGEGGAM 328 (368)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----------------------------CCCC
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc----------------------cccccch
Confidence 99999988744 367788899999999999999999999876642110000 0000123
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 042941 344 TNDTYIMLIKKFSRWRQFGNVFKVWNE 370 (481)
Q Consensus 344 ~~~~~~~l~~~~~~~g~~~~a~~~~~~ 370 (481)
...+|..+..+|...|++++|..++.+
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 467888899999999999999888763
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-18 Score=157.05 Aligned_cols=290 Identities=13% Similarity=0.023 Sum_probs=217.9
Q ss_pred hccCChhHHHH-HHHHHhcCCCCCCcc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCC
Q 042941 76 GKVRKFDTAWA-LIDEMRGGETGPSLV--TKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYK 152 (481)
Q Consensus 76 ~~~g~~~~a~~-~~~~~~~~~~~p~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 152 (481)
...|++++|.+ .|++.... .|+.. +...+..+...+...|++++|+..|+.+.+.. +.+..++..+..++...|
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQF--EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ----------CHHHHCCCCC--CSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhHHHhc--CCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 34578888888 88866554 22211 24567788889999999999999999999865 346778889999999999
Q ss_pred ChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHH-H--------------HHHH
Q 042941 153 NVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFS-C--------------IISC 217 (481)
Q Consensus 153 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~--------------ll~~ 217 (481)
++++|...|++.....|.+..++..+...+. ..|++++|...++.+........ ..+. . .+..
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFT-NESLQRQACEILRDWLRYTPAYA-HLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSTTTG-GGCC---------------CTTHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHhhhhcccHHHHHHHH
Confidence 9999999998866556678888999999999 89999999999999887643321 2221 1 2333
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 042941 218 YSKARNLHKVLRLFDQMKRMGIEC--DRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLD 295 (481)
Q Consensus 218 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 295 (481)
+...|++++|...++.+.+.. +. +..++..+...+...|++++|...|+++.+.... +..++..+...+...|+++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHH
Confidence 448888999999999888864 22 5788888889999999999999999988876433 6778888888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 042941 296 EARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENG 375 (481)
Q Consensus 296 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 375 (481)
+|...|+++.+.. +.+..++..+...|.+.|++++|...++++.+..
T Consensus 269 ~A~~~~~~al~~~---------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 269 EAVAAYRRALELQ---------------------------------PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---------------------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999998877642 2345677888889999999999999999887632
Q ss_pred CCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042941 376 NGP----------DRSSYTALIHALFLNGKLEEAHQYYME 405 (481)
Q Consensus 376 ~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (481)
... ...+|..+..+|...|++++|..++++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 316 RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 211 267889999999999999999888764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-17 Score=152.65 Aligned_cols=278 Identities=10% Similarity=-0.039 Sum_probs=214.4
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHH
Q 042941 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQG 143 (481)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (481)
+...+..+...+.+.|++++|...|+.+.+. ++.+..++..+...+...|++++|+..|+++.+.. +.+..++..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 138 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ----DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMA 138 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 4566889999999999999999999999886 33448899999999999999999999999999865 346788999
Q ss_pred HHHHHHcCCChhhHHHHHhhccCCCCCchH----------hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc-ccHHhHH
Q 042941 144 LLSALCRYKNVQDAEHLMFCNKDVFPFNTK----------SFNIILNGWCNIIGSSREAERVWMEMSQRGIC-YDVVSFS 212 (481)
Q Consensus 144 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~ 212 (481)
+..+|...|++++|...|++.....|.+.. .+..+...+. ..|++++|...++++...... ++..++.
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 217 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPV-DSSVLEGVKELYLEAAHQNGDMIDPDLQT 217 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC--------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHh-hhhhHHHHHHHHHHHHHhCcCccCHHHHH
Confidence 999999999999999999885443222222 2334577788 899999999999999887433 2578899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 042941 213 CIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKAR 292 (481)
Q Consensus 213 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 292 (481)
.+...+...|++++|...|+.+.+.. +.+..++..+..+|...|++++|...|+++.+..+. +..++..+..+|...|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCC
Confidence 99999999999999999999999874 557889999999999999999999999999887543 6788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 042941 293 KLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNE 370 (481)
Q Consensus 293 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 370 (481)
++++|...|++..+... +...-.. ......+..++..+..++...|+.+.+..+..+
T Consensus 296 ~~~~A~~~~~~al~~~~--~~~~~~~-------------------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQR--KSRNQQQ-------------------VPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CCHHHHHHHHHHHHHHH--CC-------------------------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCc--ccCCCcc-------------------cchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998876421 1000000 000011345677777778888888777776554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-17 Score=151.51 Aligned_cols=266 Identities=13% Similarity=-0.012 Sum_probs=199.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGW 182 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (481)
...+..+...+...|++++|+..|+.+.+.. +.+..++..+..++...|++++|+..|++.....|.+..++..+...+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4457788888999999999999999998765 346788888999999999999999999886655566788888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcc---------cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 042941 183 CNIIGSSREAERVWMEMSQRGICY---------DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIEC--DRKVYNAVIH 251 (481)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~g~~~---------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~ 251 (481)
. ..|++++|...|+++.+..... ....+..+...+...|++++|...++++.+.. +. +..++..+..
T Consensus 144 ~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 T-NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGV 221 (365)
T ss_dssp H-HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHH
T ss_pred H-ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHH
Confidence 8 8999999999999887753220 01222334677888888888888888888764 22 5778888888
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHH
Q 042941 252 ALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFG 331 (481)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 331 (481)
.|...|++++|...|+++.+..+. +..+|..+..+|...|++++|...|++..+..
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------------- 277 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ----------------------- 277 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------------
Confidence 888888888888888888876443 67788888888888888888888888876642
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCCHHHHH
Q 042941 332 LLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNG-----------PDRSSYTALIHALFLNGKLEEAH 400 (481)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~ 400 (481)
+.+..++..+...|...|++++|...++++.+.... .+...|..+..++...|+.+.+.
T Consensus 278 ----------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 347 (365)
T 4eqf_A 278 ----------PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ 347 (365)
T ss_dssp ----------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH
T ss_pred ----------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 234567777888888888888888888887663211 12567888888888888888887
Q ss_pred HHHHH
Q 042941 401 QYYME 405 (481)
Q Consensus 401 ~~~~~ 405 (481)
.+.++
T Consensus 348 ~~~~~ 352 (365)
T 4eqf_A 348 AANLG 352 (365)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 76654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-19 Score=173.31 Aligned_cols=118 Identities=14% Similarity=0.221 Sum_probs=70.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 042941 208 VVSFSCIISCYSKARNLHKVLRLFDQMKR---MGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSL 284 (481)
Q Consensus 208 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 284 (481)
..||+++|++|++.|++++|.++|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34566666666666666666666655442 355666666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 042941 285 IKPLCKARK-LDEARQAFDEMLQRGISPTIRTYHAFLDIIRT 325 (481)
Q Consensus 285 i~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 325 (481)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 666666655 34556666666666666666666655554433
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-16 Score=143.18 Aligned_cols=278 Identities=12% Similarity=0.028 Sum_probs=174.4
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHH
Q 042941 66 REYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLL 145 (481)
Q Consensus 66 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 145 (481)
..+......+...|++++|..+|+++.+. ++.+..++..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQA----APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 34555556666666666666666666554 22235555566666666666666666666665543 22344455555
Q ss_pred HHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHH-HH-HHHhcCC
Q 042941 146 SALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCI-IS-CYSKARN 223 (481)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-l~-~~~~~~~ 223 (481)
..+...|++++|...+++.....+.+...+..+.... |+......+ .. .+...|+
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~ 153 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD-----------------------VDIDDLNVQSEDFFFAAPNE 153 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC-------------------------------------------CCTTSHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH-----------------------HHHHHHHHHHHhHHHHHccc
Confidence 5555555555555555443322222222222211000 000011111 12 2666778
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 042941 224 LHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDE 303 (481)
Q Consensus 224 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 303 (481)
+++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.... +..++..+...+...|++++|...+++
T Consensus 154 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 154 YRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888887764 446777888888888888888888888888776433 567788888888888889888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----
Q 042941 304 MLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGP----- 378 (481)
Q Consensus 304 m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----- 378 (481)
+.+.. +.+..++..+...+...|++++|...++++.+.....
T Consensus 232 a~~~~---------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 278 (327)
T 3cv0_A 232 ALDIN---------------------------------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG 278 (327)
T ss_dssp HHHHC---------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHcC---------------------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccc
Confidence 76642 2345567778888888999999999998887643221
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 379 ------DRSSYTALIHALFLNGKLEEAHQYYMEM 406 (481)
Q Consensus 379 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (481)
+...|..+..++.+.|++++|..++++.
T Consensus 279 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 279 EASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp --CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4678888999999999999999888754
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-16 Score=143.83 Aligned_cols=277 Identities=11% Similarity=0.026 Sum_probs=207.6
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
.++.++|..+|+.+.... +.+..++..+...+...|++++|...|+++.+. ++.+..++..+...+...|++++
T Consensus 34 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~~~~~~ 107 (327)
T 3cv0_A 34 LANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARML----DPKDIAVHAALAVSHTNEHNANA 107 (327)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CcCCHHHHHHHHHHHHHcCCHHH
Confidence 588999999999997665 357889999999999999999999999999886 33348899999999999999999
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHH--HHHhcCCHHHHHHHHHHH
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNG--WCNIIGSSREAERVWMEM 199 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~~~~~~ 199 (481)
|+..++.+.+.... +...+..+...+ |+......+... +. ..|++++|...++.+
T Consensus 108 A~~~~~~~~~~~~~-~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~ 164 (327)
T 3cv0_A 108 ALASLRAWLLSQPQ-YEQLGSVNLQAD---------------------VDIDDLNVQSEDFFFA-APNEYRECRTLLHAA 164 (327)
T ss_dssp HHHHHHHHHHTSTT-TTTC-----------------------------------------CCTT-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCc-cHHHHHHHhHHH---------------------HHHHHHHHHHHhHHHH-HcccHHHHHHHHHHH
Confidence 99999999875422 222322221111 111112222122 55 788999999999998
Q ss_pred HhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChh
Q 042941 200 SQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVV 279 (481)
Q Consensus 200 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (481)
...... +...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|+++.+.... +..
T Consensus 165 ~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~ 241 (327)
T 3cv0_A 165 LEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVR 241 (327)
T ss_dssp HHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred HhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHH
Confidence 876433 67788889999999999999999999998874 556788999999999999999999999999887543 678
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 042941 280 TYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWR 359 (481)
Q Consensus 280 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 359 (481)
++..+...|...|++++|...+++..+.........- ......+..++..+..++...|
T Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 242 VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG---------------------EASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC--------------------------CCTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccc---------------------cchhhcCHHHHHHHHHHHHhcC
Confidence 8899999999999999999999988764211100000 0000113567888999999999
Q ss_pred ChhHHHHHHHHH
Q 042941 360 QFGNVFKVWNEI 371 (481)
Q Consensus 360 ~~~~a~~~~~~~ 371 (481)
++++|..++++.
T Consensus 301 ~~~~A~~~~~~~ 312 (327)
T 3cv0_A 301 RPDLVELTYAQN 312 (327)
T ss_dssp CHHHHHHHTTCC
T ss_pred CHHHHHHHHHHH
Confidence 999999988754
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-15 Score=146.20 Aligned_cols=388 Identities=8% Similarity=-0.080 Sum_probs=238.6
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhcC-----CCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC---
Q 042941 62 AHSTREYHTMIAILGKVRKFDTAWALIDEMRGG-----ETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFK--- 133 (481)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--- 133 (481)
......||.+..++...|++++|++.|++..+. +...++....+|..+...|...|++++|...+++..+..
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 345678999999999999999999999876541 111233346788889999999999999999988776421
Q ss_pred ---CC-CCHHhHHHHHHHHHc--CCChhhHHHHHhhccCCCCCchHhHHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCc
Q 042941 134 ---FA-VGIEDFQGLLSALCR--YKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWC--NIIGSSREAERVWMEMSQRGIC 205 (481)
Q Consensus 134 ---~~-~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~a~~~~~~~~~~g~~ 205 (481)
.. ..+.++.....++.. .+++++|+..|++.....|.+...+..+...+. ...++.++|++.+++..+....
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 11 124455555444443 456888888888755444455555555444432 1456667788888777665433
Q ss_pred ccHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhH
Q 042941 206 YDVVSFSCIISCYSK----ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTY 281 (481)
Q Consensus 206 ~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 281 (481)
+..++..+...+.. .+++++|.+.+++..... +.+..++..+...|...|++++|...+++..+..+. +..++
T Consensus 208 -~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 208 -NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp -CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred -chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 44455555444443 456778888888877764 456777888888888888888888888888776443 45555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 042941 282 NSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQF 361 (481)
Q Consensus 282 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 361 (481)
..+...|...+....+... ...............+...++...+.. +.+..++..+...|...|++
T Consensus 285 ~~lg~~y~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRE-------------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHHHHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhhhHHH-------------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccH
Confidence 5555554322111100000 000000011111233444444444433 33445677889999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHHHHHHHHH
Q 042941 362 GNVFKVWNEISENGNGPDRS--SYTALIH-ALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQIASL 438 (481)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~ 438 (481)
++|...|++..+....|... .+..+.. .+...|++++|+..|++..+ +.|+........ ...+...+..
T Consensus 351 ~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~~------~~l~~~~~~~ 422 (472)
T 4g1t_A 351 EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKMK------DKLQKIAKMR 422 (472)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHHH------HHHHHHHHHH
Confidence 99999999998865433221 2333332 34578999999999999887 456654332222 2334556677
Q ss_pred hhcCccCCCCccccccccccchhhccCccccchhcc
Q 042941 439 KAHQPQSGQNTRVISKKSDQDREFLQQPETRRVVRH 474 (481)
Q Consensus 439 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~r~~~~~ 474 (481)
.+.+|.++..+..+|.+|...|++++|.+.-++.-+
T Consensus 423 l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 423 LSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp HHHCC-CTTHHHHHHHHHHHHHHCC-----------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 788999999999999999999999999987655433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.6e-18 Score=165.72 Aligned_cols=136 Identities=15% Similarity=0.117 Sum_probs=115.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042941 277 NVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFS 356 (481)
Q Consensus 277 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 356 (481)
-..||+++|.+||+.|++++|.++|.+|.+. ...|+.||..|||+||.+|+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m-----------------------------~~kG~~PdvvTYNtLI~Glc 176 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQ-----------------------------RQKRKLLTLDMYNAVMLGWA 176 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS-----------------------------HHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-----------------------------hhcCCCCCHhHHHHHHHHHH
Confidence 4568999999999999999999999998753 23356789999999999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHHHHHH
Q 042941 357 RWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGK-LEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQI 435 (481)
Q Consensus 357 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~ 435 (481)
+.|++++|.++|++|.+.|+.||..|||++|.++++.|+ .++|.++|++|.+.|+.||..||+.++....+. ..+
T Consensus 177 k~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL 252 (1134)
T 3spa_A 177 RQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVL 252 (1134)
T ss_dssp HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHH
Confidence 999999999999999999999999999999999999998 578999999999999999999999887655444 444
Q ss_pred HHHhhcCccC
Q 042941 436 ASLKAHQPQS 445 (481)
Q Consensus 436 ~~~~~~~~~~ 445 (481)
+.+....|+.
T Consensus 253 ~~Vrkv~P~f 262 (1134)
T 3spa_A 253 KAVHKVKPTF 262 (1134)
T ss_dssp HHHGGGCCCC
T ss_pred HHHHHhCccc
Confidence 4444445533
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-15 Score=133.46 Aligned_cols=275 Identities=13% Similarity=0.039 Sum_probs=185.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHH
Q 042941 111 RRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSR 190 (481)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (481)
+.....|++..|+..++........+.......+.++|...|+++.|+..++. ..+|+..++..+...+. ..++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~-~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLA-SHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHH-CSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHc-CCCcHH
Confidence 44455677888887777654432111123445566778888888877776643 24566677777777777 778888
Q ss_pred HHHHHHHHHHhcCCcc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 042941 191 EAERVWMEMSQRGICY-DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSM 269 (481)
Q Consensus 191 ~a~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (481)
+|++.++++...+..| +...+..+...+...|++++|++.++. +.+...+..+...+.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888888877765444 344555666778888888888888876 456777778888888888888888888888
Q ss_pred HHcCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHH
Q 042941 270 EEKGVAPNVVTY---NSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTND 346 (481)
Q Consensus 270 ~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (481)
.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+..
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~---------------------------------p~~~~ 201 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC---------------------------------SPTLL 201 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS---------------------------------CCCHH
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC---------------------------------CCcHH
Confidence 7763 343211 112233334577888888888876641 45677
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 042941 347 TYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEE-AHQYYMEMKEKQLLPEPKTDELLQDWS 425 (481)
Q Consensus 347 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~~~p~~~~~~~l~~~~ 425 (481)
.++.+..++.+.|++++|...+++..+... .+..++..++..+...|+.++ +.++++++.+ +.|+..... +..
T Consensus 202 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~~---d~~ 275 (291)
T 3mkr_A 202 LLNGQAACHMAQGRWEAAEGVLQEALDKDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFIK---EYR 275 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHH---HHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChHHH---HHH
Confidence 788888888888999999998888877543 367788888888888888865 5678888776 346554332 334
Q ss_pred hhhhHHHHHHH
Q 042941 426 YNKQFVERQIA 436 (481)
Q Consensus 426 ~~~~~~~~~~~ 436 (481)
.+.+..+++..
T Consensus 276 ~~~~~fd~~~~ 286 (291)
T 3mkr_A 276 AKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-17 Score=147.67 Aligned_cols=292 Identities=9% Similarity=0.064 Sum_probs=132.0
Q ss_pred CHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 042941 30 SSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLIL 109 (481)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~l 109 (481)
+...+..+|..+ ++.++|.++++.+ +++.+|..++.++.+.|++++|++.|.+. +| ..+|..+
T Consensus 5 ~~~a~~~ll~~~-~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D---~~~y~~V 67 (449)
T 1b89_A 5 NTSAVQVLIEHI-GNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DD---PSSYMEV 67 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHc-cCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CC---HHHHHHH
Confidence 344455555544 6689999999877 33459999999999999999999999653 35 7799999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCH
Q 042941 110 IRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSS 189 (481)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (481)
+.++...|++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|. ..|.+
T Consensus 68 ~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~-~~g~y 138 (449)
T 1b89_A 68 VQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCY-DEKMY 138 (449)
T ss_dssp -------------------------------------------CHHHHTTTTT------CC-----------------CT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHH-HcCCH
Confidence 99999999999999988777663 4567788899999999999999988885 367779999999999 99999
Q ss_pred HHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 042941 190 REAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSM 269 (481)
Q Consensus 190 ~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (481)
++|...|..+ ..|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+
T Consensus 139 eeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L 203 (449)
T 1b89_A 139 DAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI 203 (449)
T ss_dssp TTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT
T ss_pred HHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 9999999976 47999999999999999999999987 27899999999999999999996665543
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhch--hHHHHHHHHHHHc-CCCC---
Q 042941 270 EEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTG--EEVFGLLESMRKM-GCQP--- 343 (481)
Q Consensus 270 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--~~~~~~~~~~~~~-~~~~--- 343 (481)
. ....-...++..|.+.|++++|..+++...... .-....|+-+--.|++. +...+.++..... +++|
T Consensus 204 ~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~ 277 (449)
T 1b89_A 204 V-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLR 277 (449)
T ss_dssp T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHH
T ss_pred H-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHH
Confidence 2 233345578899999999999999999987654 34566677666666554 4444444444322 3333
Q ss_pred ---CHHHHHHHHHHHHhcCChhHHHHHH
Q 042941 344 ---TNDTYIMLIKKFSRWRQFGNVFKVW 368 (481)
Q Consensus 344 ---~~~~~~~l~~~~~~~g~~~~a~~~~ 368 (481)
+...|..++..|...++++.|..+.
T Consensus 278 ~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 278 AAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 3445778888899999999887643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-13 Score=130.55 Aligned_cols=337 Identities=12% Similarity=0.051 Sum_probs=271.3
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhc----cCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh--
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGK----VRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCA-- 115 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~-- 115 (481)
.++.+.|+..|+..... | +..++..+...|.. .+++++|...|+...+.| + +.++..+...|..
T Consensus 56 ~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~---~~a~~~Lg~~y~~g~ 125 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ-G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L---PQAQQNLGVMYHEGN 125 (490)
T ss_dssp CCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHTS
T ss_pred CcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C---HHHHHHHHHHHHcCC
Confidence 36789999999998654 3 67788889999988 899999999999998764 4 6777888888888
Q ss_pred --cCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHc----CCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHh----
Q 042941 116 --VHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCR----YKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNI---- 185 (481)
Q Consensus 116 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 185 (481)
.+++++|+..|++..+.+ ++..+..+...|.. .++.++|...|++.... .+...+..+...|. .
T Consensus 126 g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~-~g~g~ 199 (490)
T 2xm6_A 126 GVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYS-RGLGV 199 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HTSSS
T ss_pred CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHh-cCCCC
Confidence 789999999999998865 56777778888877 78999999999885432 36778888888887 6
Q ss_pred cCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CC
Q 042941 186 IGSSREAERVWMEMSQRGICYDVVSFSCIISCYSK----ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAK----GR 257 (481)
Q Consensus 186 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g 257 (481)
.+++++|...|+...+.| +...+..+...|.. .+++++|..+|+...+.| +...+..+...|.. .+
T Consensus 200 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~ 273 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAK 273 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCC
Confidence 799999999999988875 55667777777776 789999999999988765 45667777777877 89
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc------h
Q 042941 258 LVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKA-----RKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRT------G 326 (481)
Q Consensus 258 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~------~ 326 (481)
++++|...|++..+.| +...+..+...|... +++++|...|++..+.+ +...+..+-..|.. .
T Consensus 274 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~ 347 (490)
T 2xm6_A 274 EPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEH 347 (490)
T ss_dssp CHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHH
T ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccH
Confidence 9999999999998764 556777788888877 89999999999998875 33444444444433 3
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 042941 327 EEVFGLLESMRKMGCQPTNDTYIMLIKKFSR----WRQFGNVFKVWNEISENGNGPDRSSYTALIHALFL----NGKLEE 398 (481)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 398 (481)
..+...++...+.+ +...+..+...|.. .+++++|...|++..+.| +...+..+...|.+ .+++++
T Consensus 348 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~ 421 (490)
T 2xm6_A 348 KKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQ 421 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 44566666666653 57788888888888 899999999999998865 57788889999988 899999
Q ss_pred HHHHHHHHHHCCCC
Q 042941 399 AHQYYMEMKEKQLL 412 (481)
Q Consensus 399 A~~~~~~m~~~~~~ 412 (481)
|...|++..+.+..
T Consensus 422 A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 422 AWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCCCC
Confidence 99999999987643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.8e-14 Score=135.98 Aligned_cols=376 Identities=11% Similarity=0.039 Sum_probs=290.2
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHhc----cCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh----cCCH
Q 042941 48 AFTFFLWAGKQSGYAHSTREYHTMIAILGK----VRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCA----VHDV 119 (481)
Q Consensus 48 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~----~~~~ 119 (481)
++..+..... . -+..++..+...|.. .+++++|...|+...+.| + +.++..+...|.. .++.
T Consensus 26 ~~~~~~~~a~-~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~---~~a~~~Lg~~y~~g~g~~~~~ 95 (490)
T 2xm6_A 26 NLEQLKQKAE-S---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---Y---TPAEYVLGLRYMNGEGVPQDY 95 (490)
T ss_dssp CHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---C---HHHHHHHHHHHHcCCCCCCCH
Confidence 3455555433 2 377888888888887 899999999999998763 4 7788888899988 8999
Q ss_pred HHHHHHHHHHhhcCCCCCHHhHHHHHHHHHc----CCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHh----cCCHHH
Q 042941 120 GRAINAFYAYKRFKFAVGIEDFQGLLSALCR----YKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNI----IGSSRE 191 (481)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~ 191 (481)
++|...|++..+.| ++..+..|...|.. .+++++|...|++.... .+...+..+...|. . .+++++
T Consensus 96 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~-~g~g~~~d~~~ 169 (490)
T 2xm6_A 96 AQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYF-EGDGVTRDYVM 169 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 99999999998865 66777778888887 78999999999885432 35677778888887 6 789999
Q ss_pred HHHHHHHHHhcCCcccHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChHHHH
Q 042941 192 AERVWMEMSQRGICYDVVSFSCIISCYSK----ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAK----GRLVKDAI 263 (481)
Q Consensus 192 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~ 263 (481)
|...|++..+.| +...+..+...|.. .+++++|...|+...+.| +...+..+...|.. .+++++|.
T Consensus 170 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 170 AREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999998874 66778888888887 899999999999998875 56778888888876 88999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--------hhHHHH
Q 042941 264 SLMKSMEEKGVAPNVVTYNSLIKPLCK----ARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRT--------GEEVFG 331 (481)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--------~~~~~~ 331 (481)
..|++..+.| +...+..+-..|.. .+++++|..+|+...+.| +...+..+-..|.. ..++..
T Consensus 244 ~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~ 317 (490)
T 2xm6_A 244 VLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAIS 317 (490)
T ss_dssp HHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHH
Confidence 9999998864 55667777777877 899999999999998775 34444444444433 345566
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 042941 332 LLESMRKMGCQPTNDTYIMLIKKFSRWR---QFGNVFKVWNEISENGNGPDRSSYTALIHALFL----NGKLEEAHQYYM 404 (481)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 404 (481)
.++...+.+ +...+..+...|...| ++++|.+.|++..+.| +...+..+...|.. .+++++|...|+
T Consensus 318 ~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 391 (490)
T 2xm6_A 318 WYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMR 391 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 777766654 4567777777787766 7899999999998863 67888899999998 899999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHHHhh----h---hHHHHHHHHHhhcC---ccCCCCccccccccccch
Q 042941 405 EMKEKQLLPEPKTDELLQDWSYN----K---QFVERQIASLKAHQ---PQSGQNTRVISKKSDQDR 460 (481)
Q Consensus 405 ~m~~~~~~p~~~~~~~l~~~~~~----~---~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~ 460 (481)
+..+.| ++..+..+-..+.. . ..+...++...+.. |+++.....++.++....
T Consensus 392 ~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~~ 454 (490)
T 2xm6_A 392 KAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQL 454 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHHH
T ss_pred HHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhHH
Confidence 999875 34555545444433 3 44445555666666 446777777888776543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-16 Score=143.60 Aligned_cols=320 Identities=8% Similarity=0.034 Sum_probs=151.3
Q ss_pred ccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhh
Q 042941 77 KVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQD 156 (481)
Q Consensus 77 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 156 (481)
+.|++++|.+.++++. + +.+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++
T Consensus 15 ~~~~ld~A~~fae~~~------~---~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~Ee 79 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------E---PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------C---hHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHH
Confidence 6688999999999993 3 56999999999999999999999965 2577799999999999999999
Q ss_pred HHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 157 AEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKR 236 (481)
Q Consensus 157 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 236 (481)
|+..++..... .+++.+.+.++.+|. +.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 80 Ai~yl~~ark~-~~~~~i~~~Li~~Y~-Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 80 LVKYLQMARKK-ARESYVETELIFALA-KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHHHh-CccchhHHHHHHHHH-HhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 99988776554 456788999999999 9999999998885 367789999999999999999999999976
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 042941 237 MGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTY 316 (481)
Q Consensus 237 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 316 (481)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|......+. ......
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhH
Confidence 47999999999999999999999988 278999999999999999999966555432 233345
Q ss_pred HHHHHHHhchhHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCC------CHHHHHHHH
Q 042941 317 HAFLDIIRTGEEVFGLLESMRKM-GC-QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISE-NGNGP------DRSSYTALI 387 (481)
Q Consensus 317 ~~li~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~------~~~~~~~l~ 387 (481)
..++..|.+.|...+++..+... |. +-...+|+-+.-.|++- ++++..+.++.... .+++| +...|.-+.
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 56778888777665555555443 32 44567788777777764 34444444443332 22333 345688889
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHhhhhHHHHHHHHHhhcCcc
Q 042941 388 HALFLNGKLEEAHQYYMEMKEK-QLLPEPKTDELLQDWSYNKQFVERQIASLKAHQPQ 444 (481)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 444 (481)
..|.+.++++.|.. .|.+. ..--+...|--++....+.+..=+++....+..|.
T Consensus 290 ~ly~~~~e~d~A~~---tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~ 344 (449)
T 1b89_A 290 FLYDKYEEYDNAII---TMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPL 344 (449)
T ss_dssp HHHHHTTCHHHHHH---HHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGG
T ss_pred HHHHhhchHHHHHH---HHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHH
Confidence 99999999998876 45554 23344555666666666777777888888877775
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-14 Score=127.43 Aligned_cols=247 Identities=9% Similarity=-0.004 Sum_probs=198.4
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHS--TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDV 119 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~ 119 (481)
.+.+..|+..++.... ..|+ ......+..+|...|+++.|+..++. . ++....++..+...+...++.
T Consensus 12 ~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~----~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S----SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp TTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T----SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c----CChhHHHHHHHHHHHcCCCcH
Confidence 5888899988876532 2244 34556778999999999999986644 1 222378888899999999999
Q ss_pred HHHHHHHHHHhhcCCCC-CHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 042941 120 GRAINAFYAYKRFKFAV-GIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWME 198 (481)
Q Consensus 120 ~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 198 (481)
++|+..++++...+..| ++..+..+..++...|++++|++.+++ +.+...+..+...+. +.|++++|.+.|+.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~-~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILL-KLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHH-HCCCHHHHHHHHHH
Confidence 99999999998776545 456677777999999999999999987 567888999999999 99999999999999
Q ss_pred HHhcCCcccHHhH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC
Q 042941 199 MSQRGICYDVVSF---SCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVA 275 (481)
Q Consensus 199 ~~~~g~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (481)
+.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|+++.+..+.
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 98874 443211 223344455689999999999999874 678889999999999999999999999999887554
Q ss_pred CChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHCC
Q 042941 276 PNVVTYNSLIKPLCKARKLDE-ARQAFDEMLQRG 308 (481)
Q Consensus 276 ~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~ 308 (481)
+..++..++..+...|+.++ +.++++++.+..
T Consensus 233 -~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 233 -HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp -CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred -CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 77889999999999999876 678998888754
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-13 Score=138.51 Aligned_cols=389 Identities=12% Similarity=0.068 Sum_probs=224.2
Q ss_pred CHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCC-CCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHH
Q 042941 30 SSELVSEVLSWV--RNDWEAAFTFFLWAGKQSG-YAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTL 106 (481)
Q Consensus 30 ~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~ 106 (481)
+|.-+......+ .+.+.+|+++++.+..... +.-+....+.++.+-.+. +..+..++.+.+... + .
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d------~ 1052 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D------A 1052 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c------H
Confidence 344444444433 3555666666666652222 223344444444444443 333444444333311 1 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhc
Q 042941 107 LILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNII 186 (481)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 186 (481)
..+...+...|.+++|..+|++.. ......+.++. ..+++++|.++.++. .+..+|..+..++. ..
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv-----n~p~vWsqLAKAql-~~ 1118 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC-----NEPAVWSQLAKAQL-QK 1118 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc-----CCHHHHHHHHHHHH-hC
Confidence 124445555666677777766642 11111222222 555666666666654 24566777777777 77
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 042941 187 GSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLM 266 (481)
Q Consensus 187 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 266 (481)
|++++|.+.|.+. -|...|..++.+|.+.|++++|.+.+....+.. +++...+.++.+|++.+++++.....
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 7777777777543 256667777777777777777777777666643 33333344777777777776433332
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHH
Q 042941 267 KSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTND 346 (481)
Q Consensus 267 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (481)
+ .++...|..+...|...|++++|..+|... ..|..+...+.+.++.....+...+. .+..
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA---~n~~ 1251 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA---NSTR 1251 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh---CCHH
Confidence 2 235556666777777777777777777764 35667777777666666666665554 3456
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHH
Q 042941 347 TYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEP-KTDELLQDWS 425 (481)
Q Consensus 347 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~ 425 (481)
+|..+..+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++..... .|.. ..|.-+..++
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLy 1324 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILY 1324 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHH
Confidence 77777777777777777777655422 35666778888888888888888888776533 2222 2232222222
Q ss_pred --hhhhHHHHHHHHHhhcCc--------cCCCCccccccccccchhhccCccccchhccccccc
Q 042941 426 --YNKQFVERQIASLKAHQP--------QSGQNTRVISKKSDQDREFLQQPETRRVVRHQGFSF 479 (481)
Q Consensus 426 --~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~r~~~~~~~~~~ 479 (481)
.+-+...+.++...+... .....|..+..+|.+.|+|+.|.. -.|++..-.|
T Consensus 1325 aKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~--tm~~h~~~a~ 1386 (1630)
T 1xi4_A 1325 SKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII--TMMNHPTDAW 1386 (1630)
T ss_pred HhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH--HHHhccHhhh
Confidence 233333344444443332 334456677788888888887765 3455544444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.70 E-value=7.4e-13 Score=128.36 Aligned_cols=402 Identities=10% Similarity=0.023 Sum_probs=272.4
Q ss_pred CHHHHHHHHHHh-hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHH
Q 042941 30 SSELVSEVLSWV-RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLI 108 (481)
Q Consensus 30 ~~~~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~ 108 (481)
+...+..++... .++.+.|..+|+.+.... +.+...|...+..+.+.|++++|..+|++.... .|+ ...|..
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~---~~lw~~ 84 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLH---IDLWKC 84 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCC---HHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC---hHHHHH
Confidence 566666666643 478899999999997655 457889999999999999999999999999987 355 677777
Q ss_pred HHHHH-HhcCCHHHHHH----HHHHHhh-cCCCC-CHHhHHHHHHHHHc---------CCChhhHHHHHhhccCCCCCc-
Q 042941 109 LIRRY-CAVHDVGRAIN----AFYAYKR-FKFAV-GIEDFQGLLSALCR---------YKNVQDAEHLMFCNKDVFPFN- 171 (481)
Q Consensus 109 li~~~-~~~~~~~~a~~----~~~~~~~-~~~~~-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~- 171 (481)
.+... ...|+.+.|.+ +|+.... .|..| +...|...+....+ .|+++.|..+|++... .|..
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~ 163 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMIN 163 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTT
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhh
Confidence 76533 34577766655 7777664 34443 56677777776654 6889999999998665 3322
Q ss_pred -hHhHHHHHHHHHHh-------------cCCHHHHHHHHHHHH------hcC---Cccc--------HHhHHHHHHHHHh
Q 042941 172 -TKSFNIILNGWCNI-------------IGSSREAERVWMEMS------QRG---ICYD--------VVSFSCIISCYSK 220 (481)
Q Consensus 172 -~~~~~~l~~~~~~~-------------~~~~~~a~~~~~~~~------~~g---~~~~--------~~~~~~ll~~~~~ 220 (481)
...|........ . .+++..|..++..+. +.. +.|+ ...|...+.....
T Consensus 164 ~~~~~~~~~~~e~-~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~ 242 (530)
T 2ooe_A 164 IEQLWRDYNKYEE-GINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKS 242 (530)
T ss_dssp HHHHHHHHHHHHH-HHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHc
Confidence 233333332111 1 234566766666532 111 2333 2355555543322
Q ss_pred c----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-------CCChH-------HHHHHHHHHHHcCCCCCh
Q 042941 221 A----RNL----HKVLRLFDQMKRMGIECDRKVYNAVIHALAK-------GRLVK-------DAISLMKSMEEKGVAPNV 278 (481)
Q Consensus 221 ~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~ 278 (481)
. ++. ..+..+|++..... +.+...|..+...+.+ .|+++ +|..+|++..+.-.+.+.
T Consensus 243 ~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~ 321 (530)
T 2ooe_A 243 NPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM 321 (530)
T ss_dssp CSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH
T ss_pred CCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH
Confidence 1 222 47788898888763 5578888888888875 79987 899999999863223367
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhchhH---HHHHHHHHHHcCCCCCHHHHHHHHH
Q 042941 279 VTYNSLIKPLCKARKLDEARQAFDEMLQRGISPT--IRTYHAFLDIIRTGEE---VFGLLESMRKMGCQPTNDTYIMLIK 353 (481)
Q Consensus 279 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~ 353 (481)
..|..++..+.+.|++++|..+|+.+.+.. |+ ...|..+...+.+.++ +..+++...+.. +.+...|.....
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~ 398 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHH
Confidence 889999999999999999999999999853 43 2467777666655544 466666665542 223333333222
Q ss_pred H-HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HhHHHHHHHHH---h
Q 042941 354 K-FSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQ-LLPE--PKTDELLQDWS---Y 426 (481)
Q Consensus 354 ~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~l~~~~---~ 426 (481)
. +...|++++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+... +
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 2 346899999999999988753 2368899999999999999999999999999863 2232 22454444443 3
Q ss_pred hhhHHHHHHHHHhhcCccC
Q 042941 427 NKQFVERQIASLKAHQPQS 445 (481)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~ 445 (481)
+...+....+...+..|++
T Consensus 478 ~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 478 DLASILKVEKRRFTAFREE 496 (530)
T ss_dssp CHHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHHHCchh
Confidence 4445556666777777753
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.8e-15 Score=123.89 Aligned_cols=210 Identities=12% Similarity=-0.021 Sum_probs=112.0
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhH
Q 042941 62 AHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDF 141 (481)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 141 (481)
+++...+..+...+.+.|++++|...|+...+. ++.++.++..+...+...|++++|+..|++..+.+ +.+...+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~ 76 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE----NPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGY 76 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 456677888888888888888888888888776 44457788888888888888888888888887754 2355666
Q ss_pred HHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhc
Q 042941 142 QGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKA 221 (481)
Q Consensus 142 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 221 (481)
..+..++...+.. . .. ... ..|++++|+..|++..+..+. +...+..+..++...
T Consensus 77 ~~lg~~~~~~~~~-----------~---~~---------~~~-~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~ 131 (217)
T 2pl2_A 77 MVLSEAYVALYRQ-----------A---ED---------RER-GKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALL 131 (217)
T ss_dssp HHHHHHHHHHHHT-----------C---SS---------HHH-HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhh-----------h---hh---------hcc-cccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHc
Confidence 6677766665000 0 00 001 124455555555544443222 334444444455555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 042941 222 RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAF 301 (481)
Q Consensus 222 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 301 (481)
|++++|...|++..+.. .+...+..+..+|...|++++|...|++..+..+. +...+..+...+...|++++|...|
T Consensus 132 g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~ 208 (217)
T 2pl2_A 132 GERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAA 208 (217)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC-----------
T ss_pred CChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHH
Confidence 55555555555554443 34444555555555555555555555555444322 3444444445555555555555554
Q ss_pred HHH
Q 042941 302 DEM 304 (481)
Q Consensus 302 ~~m 304 (481)
++.
T Consensus 209 ~~~ 211 (217)
T 2pl2_A 209 ALE 211 (217)
T ss_dssp ---
T ss_pred HHH
Confidence 443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.66 E-value=5.4e-12 Score=122.27 Aligned_cols=384 Identities=8% Similarity=-0.006 Sum_probs=264.7
Q ss_pred ChhHHHHHHHhcCCCCCHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH-hccCChhHHHH----
Q 042941 14 KRSEMRNKIEECGIKVSSELVSEVLSWV--RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAIL-GKVRKFDTAWA---- 86 (481)
Q Consensus 14 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~a~~---- 86 (481)
.+..+++.+.+. .+-++......+... .++.+.|..+|+.+.... |+...|...+... ...|+++.|.+
T Consensus 30 ~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~~~~~~~~~~~~~~~~a~~~~~~ 105 (530)
T 2ooe_A 30 KARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWKCYLSYVRETKGKLPSYKEKMAQ 105 (530)
T ss_dssp HHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHHTTTSTTHHHHHHH
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHccchhhHHHHHHH
Confidence 555566665532 233555565555554 478899999999997544 6888888888644 45677777665
Q ss_pred HHHHHhc-CCCCCCcccHHHHHHHHHHHHh---------cCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHH--------
Q 042941 87 LIDEMRG-GETGPSLVTKQTLLILIRRYCA---------VHDVGRAINAFYAYKRFKFAVGIEDFQGLLSAL-------- 148 (481)
Q Consensus 87 ~~~~~~~-~~~~p~~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-------- 148 (481)
+|+.... .|..|+ +...|...+..... .|+++.|..+|++..+....+....|.......
T Consensus 106 ~~~~al~~~g~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~ 183 (530)
T 2ooe_A 106 AYDFALDKIGMEIM--SYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLA 183 (530)
T ss_dssp HHHHHHHHTTTSTT--CHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHCCCCcc--cHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHH
Confidence 7777655 355443 47788888776654 789999999999998731111123343322211
Q ss_pred -----HcCCChhhHHHHHhh-------ccC---CCCCc--------hHhHHHHHHHHHHhc----CCH----HHHHHHHH
Q 042941 149 -----CRYKNVQDAEHLMFC-------NKD---VFPFN--------TKSFNIILNGWCNII----GSS----REAERVWM 197 (481)
Q Consensus 149 -----~~~~~~~~a~~~~~~-------~~~---~~~~~--------~~~~~~l~~~~~~~~----~~~----~~a~~~~~ 197 (481)
...+++..|..++.. +.. ..+|+ ...|...+..-. .. ++. ..+..+|+
T Consensus 184 ~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~-~~~~~~~~~~~~~~~a~~~y~ 262 (530)
T 2ooe_A 184 KKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEK-SNPLRTEDQTLITKRVMFAYE 262 (530)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHH-HCSSCCSCSHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHH-cCCccCCcchhHHHHHHHHHH
Confidence 133456677766643 221 13443 245555554322 21 222 47778898
Q ss_pred HHHhcCCcccHHhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 042941 198 EMSQRGICYDVVSFSCIISCYSK-------ARNLH-------KVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAI 263 (481)
Q Consensus 198 ~~~~~g~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 263 (481)
+...... -+...|..+...+.+ .|+++ +|..+|+...+.-.+.+...|..++..+.+.|++++|.
T Consensus 263 ~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~ 341 (530)
T 2ooe_A 263 QCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH 341 (530)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHH
Confidence 8877632 366778877777765 68876 89999999886323456888999999999999999999
Q ss_pred HHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHH--HhchhHHHHHHHHHH
Q 042941 264 SLMKSMEEKGVAPN--VVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHA--FLDI--IRTGEEVFGLLESMR 337 (481)
Q Consensus 264 ~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~--li~~--~~~~~~~~~~~~~~~ 337 (481)
.+|+++.+. .|+ ...|...+..+.+.|++++|..+|+...+.... +...+.. .+.. ..+.+.+..+++...
T Consensus 342 ~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al 418 (530)
T 2ooe_A 342 SIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGL 418 (530)
T ss_dssp HHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 999999986 343 247888888888999999999999999876322 2222222 2221 233456777888776
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 338 KMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGN-GP--DRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 338 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
+.. +.+...+..++..+.+.|+.++|..+|++....+. .| ....|...+......|+.+.+.++++++.+.
T Consensus 419 ~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 419 KKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 653 44678899999999999999999999999988642 23 2458888888888999999999999998764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-13 Score=131.29 Aligned_cols=269 Identities=13% Similarity=0.037 Sum_probs=190.6
Q ss_pred HHHhhcCHHHHHHHHHHhhhC-------CCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcC----CCCCCcccHHHH
Q 042941 38 LSWVRNDWEAAFTFFLWAGKQ-------SGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGG----ETGPSLVTKQTL 106 (481)
Q Consensus 38 l~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~~~ 106 (481)
+....++.++|++.|+....- ..-+....+|+.+..+|...|++++|...+++..+. .-..+...+.++
T Consensus 60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~ 139 (472)
T 4g1t_A 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD 139 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHH
Confidence 333468899999988876521 112234678999999999999999999999887542 111122236677
Q ss_pred HHHHHHHHhc--CCHHHHHHHHHHHhhcCCCCCHHhHHHHHHH---HHcCCChhhHHHHHhhccCCCCCchHhHHHHHHH
Q 042941 107 LILIRRYCAV--HDVGRAINAFYAYKRFKFAVGIEDFQGLLSA---LCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNG 181 (481)
Q Consensus 107 ~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 181 (481)
.....++... +++++|+..|++..+... -++..+..+..+ +...++.++|++.+++.....|.+...+..+...
T Consensus 140 ~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~ 218 (472)
T 4g1t_A 140 CEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALK 218 (472)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHH
Confidence 7666555554 579999999999988652 245555554444 4556788889988877554455566666666554
Q ss_pred HH---HhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--
Q 042941 182 WC---NIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKG-- 256 (481)
Q Consensus 182 ~~---~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 256 (481)
+. ...+++++|.+.+++....... +..++..+...|...|++++|...++...+.. +-+..++..+..+|...
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~ 296 (472)
T 4g1t_A 219 LHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVF 296 (472)
T ss_dssp HHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHH
Confidence 44 1346788999999988776443 66778889999999999999999999998874 44566676666655332
Q ss_pred -----------------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042941 257 -----------------RLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGIS 310 (481)
Q Consensus 257 -----------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 310 (481)
+.++.|...++...+.... +..++..+...|...|++++|...|++..+....
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 2356788888888776543 6778888999999999999999999999886543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-11 Score=124.73 Aligned_cols=342 Identities=11% Similarity=0.052 Sum_probs=251.4
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
+.+..+..++..... . .+ ...+...+...|.+++|..+|++... . ..+.+.++. ..+++++
T Consensus 1034 kaD~~Rv~eyI~kLd-~----~d---~~eIA~Iai~lglyEEAf~IYkKa~~-----~---~~A~~VLie---~i~nldr 1094 (1630)
T 1xi4_A 1034 KADRTRVMEYINRLD-N----YD---APDIANIAISNELFEEAFAIFRKFDV-----N---TSAVQVLIE---HIGNLDR 1094 (1630)
T ss_pred HhChhhHHHHHHHhh-h----cc---HHHHHHHHHhCCCHHHHHHHHHHcCC-----H---HHHHHHHHH---HHhhHHH
Confidence 345555555555542 1 12 34477888899999999999999742 2 344455544 6688999
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQ 201 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 201 (481)
|.++.++. -++.+|..+..++...|++++|...|.+. .|...|..++..+. +.|++++|.+.|....+
T Consensus 1095 AiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~-~lGkyEEAIeyL~mArk 1162 (1630)
T 1xi4_A 1095 AYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAAN-TSGNWEELVKYLQMARK 1162 (1630)
T ss_pred HHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHH-HcCCHHHHHHHHHHHHh
Confidence 99999865 25778899999999999999999999764 47788889999999 99999999999998776
Q ss_pred cCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhH
Q 042941 202 RGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTY 281 (481)
Q Consensus 202 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 281 (481)
.. ++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|... ..|
T Consensus 1163 ~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny 1224 (1630)
T 1xi4_A 1163 KA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 1224 (1630)
T ss_pred hc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHH
Confidence 64 33333345889999999988644442 2 456677888999999999999999999985 379
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 042941 282 NSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQF 361 (481)
Q Consensus 282 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 361 (481)
..+..+|++.|++++|.+.+++. .+..+|..+-.+|...++.......-. ++..++..+..++..|.+.|.+
T Consensus 1225 ~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl--~Iiv~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1225 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL--HIVVHADELEELINYYQDRGYF 1296 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHH--hhhcCHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999976 356888888888877776533333222 2455777888999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC------CHhHHHHHHHHHhhhhHHHHH
Q 042941 362 GNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQ-LLP------EPKTDELLQDWSYNKQFVERQ 434 (481)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p------~~~~~~~l~~~~~~~~~~~~~ 434 (481)
++|+.+++...... +-....|+-+..+|.+. ++++..+.++...+++ +.| +...|.-+.-.+.+.++.+.|
T Consensus 1297 eEAI~LlE~aL~Le-raH~gmftELaiLyaKy-~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA 1374 (1630)
T 1xi4_A 1297 EELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 1374 (1630)
T ss_pred HHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC-CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 99999998877643 22344677777777765 3444444433333432 222 234566666677788888888
Q ss_pred HHHHhhcC
Q 042941 435 IASLKAHQ 442 (481)
Q Consensus 435 ~~~~~~~~ 442 (481)
+....++.
T Consensus 1375 ~~tm~~h~ 1382 (1630)
T 1xi4_A 1375 IITMMNHP 1382 (1630)
T ss_pred HHHHHhcc
Confidence 86666653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-14 Score=124.24 Aligned_cols=226 Identities=12% Similarity=0.002 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CC----H
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFA--VG----I 138 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~ 138 (481)
...+..+...+...|++++|...|++..+.. .+ ..++..+...+...|++++|+..++...+.... ++ .
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KD---ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--cc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHH
Confidence 5678888899999999999999999998875 44 788999999999999999999999998864322 12 5
Q ss_pred HhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHH
Q 042941 139 EDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCY 218 (481)
Q Consensus 139 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 218 (481)
.++..+..++...|++++|...|++..... |+ ...+. ..|++++|...++.+...... +...+..+...+
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~-------~~~~~-~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~ 149 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RT-------ADILT-KLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC-------HHHHH-HHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcC-ch-------hHHHH-HHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHH
Confidence 778889999999999999999998854422 33 23455 788899999999998876332 556788888999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 042941 219 SKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEAR 298 (481)
Q Consensus 219 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 298 (481)
...|++++|...++...+.. +.+..++..+..++...|++++|...|++..+.... +...|..+...+...|++++|.
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999998875 557888999999999999999999999999887543 6788889999999999999999
Q ss_pred HHHHHHHHC
Q 042941 299 QAFDEMLQR 307 (481)
Q Consensus 299 ~~~~~m~~~ 307 (481)
..+++..+.
T Consensus 228 ~~~~~a~~~ 236 (258)
T 3uq3_A 228 ETLDAARTK 236 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-14 Score=120.45 Aligned_cols=196 Identities=11% Similarity=-0.001 Sum_probs=137.7
Q ss_pred CCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHH
Q 042941 136 VGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCII 215 (481)
Q Consensus 136 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 215 (481)
+++..+..+...+.+.|++++|...|++.....|.+...+..+...+. ..|++++|+..|++..+..+. +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQL-KLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 344455555566666666666666666554445555666666666666 666666666666666655322 445566666
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 042941 216 SCYSKA-----------RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSL 284 (481)
Q Consensus 216 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 284 (481)
.++... |++++|...++...+.. +-+...+..+..++...|++++|...|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666666 99999999999999874 4567889999999999999999999999999887 588899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHH
Q 042941 285 IKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMR 337 (481)
Q Consensus 285 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~ 337 (481)
..+|...|++++|...|++..+... .+...+..+...+...++..+.+..+.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999999999999988642 256677777778877776655544443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=7e-14 Score=121.81 Aligned_cols=224 Identities=12% Similarity=0.050 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCC---c----hHhH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPF---N----TKSF 175 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~----~~~~ 175 (481)
...+..+...+...|++++|+..|+.+.+.. .+..++..+..++...|++++|...+++.....+. + ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4556666667777777777777777776655 45556666666666666666666666543221111 1 2444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 042941 176 NIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAK 255 (481)
Q Consensus 176 ~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (481)
..+...+. ..|++++|...|+...... |+. ..+..
T Consensus 83 ~~l~~~~~-~~~~~~~A~~~~~~a~~~~-------------------------------------~~~-------~~~~~ 117 (258)
T 3uq3_A 83 ARIGNAYH-KLGDLKKTIEYYQKSLTEH-------------------------------------RTA-------DILTK 117 (258)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHC-------------------------------------CCH-------HHHHH
T ss_pred HHHHHHHH-HcccHHHHHHHHHHHHhcC-------------------------------------chh-------HHHHH
Confidence 44444444 4555555555555444431 221 22333
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHH
Q 042941 256 GRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLES 335 (481)
Q Consensus 256 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~ 335 (481)
.|++++|...++.+...... +...+..+...+...|++++|...+++..+..
T Consensus 118 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------------------------- 169 (258)
T 3uq3_A 118 LRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------------------------- 169 (258)
T ss_dssp HHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------
T ss_pred HhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---------------------------
Confidence 34455555555555443221 33444455555555555555555555554421
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 336 MRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 336 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
+.+..++..+...|...|++++|...+++..+... .+...|..+...+.+.|++++|...+++..+
T Consensus 170 ------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 170 ------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 12234455555555555666666666655555321 2355555556666666666666666655544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=4.1e-13 Score=116.62 Aligned_cols=200 Identities=9% Similarity=-0.042 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHH
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGL 144 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 144 (481)
...+..+...+...|++++|.+.|+++.+. ++.+..++..+...+...|++++|...++++.+.. +.+...+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 111 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI----DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNY 111 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHH
Confidence 566777777778888888888888887765 22236777777778888888888888888777654 2355666677
Q ss_pred HHHHHcCCChhhHHHHHhhccC--CCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcC
Q 042941 145 LSALCRYKNVQDAEHLMFCNKD--VFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKAR 222 (481)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~ 222 (481)
..++...|++++|...+++... ..+.+...+..+...+. ..|++++|...+++....... +...+..+...+...|
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL-QMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKER 189 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcC
Confidence 7777777777777777766544 33445556666666666 677777777777766655322 4556666666677777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 223 NLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 223 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 190 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp CHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7777777777666543 345556666666666677777777777666654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.2e-13 Score=113.10 Aligned_cols=199 Identities=10% Similarity=-0.084 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHH
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGL 144 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 144 (481)
...+..+...+...|++++|...|+.+.+. ++.+..++..+...+...|++++|...++++.+.. +.+..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKS----DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh----CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 445555555566666666666666655543 22224555555555566666666666665555433 2234444555
Q ss_pred HHHHHcC-CChhhHHHHHhhccC--CCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhc
Q 042941 145 LSALCRY-KNVQDAEHLMFCNKD--VFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKA 221 (481)
Q Consensus 145 l~~~~~~-~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 221 (481)
...+... |++++|...+++... ..+.+...+..+...+. ..|++++|...++++.+.... +...+..+...+...
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSA-KQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHc
Confidence 5555555 555555555544333 12222344444444444 455555555555544443211 234444444445555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 042941 222 RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSME 270 (481)
Q Consensus 222 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 270 (481)
|++++|...++.+.+.....+...+..+...+...|+.+.|..+++.+.
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 5555555555544443210233444444444444455555544444444
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.4e-13 Score=116.38 Aligned_cols=202 Identities=12% Similarity=-0.031 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGW 182 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (481)
...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...+++.....+.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 5678888899999999999999999998765 346788899999999999999999999986655566788899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHH
Q 042941 183 CNIIGSSREAERVWMEMSQRGICY-DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKD 261 (481)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (481)
. ..|++++|...++++...+..| +...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++
T Consensus 116 ~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 Y-EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp H-HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred H-HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 9 9999999999999998733344 45678888899999999999999999998875 4568889999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 262 AISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
|...++++.+... .+...+..+...+...|++++|...++++.+..
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999988644 367778888899999999999999999998764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.8e-13 Score=113.28 Aligned_cols=210 Identities=9% Similarity=-0.096 Sum_probs=177.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHH
Q 042941 102 TKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNG 181 (481)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 181 (481)
+..++..+...+...|++++|+..++.+.+.. +.+...+..+..++...|++++|...+++.....+.+...+..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 47788899999999999999999999998765 34678889999999999999999999998665566678889999999
Q ss_pred HHHhc-CCHHHHHHHHHHHHhcCCccc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh
Q 042941 182 WCNII-GSSREAERVWMEMSQRGICYD-VVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLV 259 (481)
Q Consensus 182 ~~~~~-~~~~~a~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 259 (481)
+. .. |++++|...++.+...+..|+ ...+..+..++...|++++|...++.+.+.. +.+...+..+..++...|++
T Consensus 86 ~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 LC-GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HH-TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HH-HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 99 99 999999999999988333333 5678888999999999999999999998874 45688899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 042941 260 KDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTY 316 (481)
Q Consensus 260 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 316 (481)
++|...++++.+.....+...+..+...+...|+.+.+..+++.+.+.. |+....
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~ 218 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF--PYSEEL 218 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHH
Confidence 9999999999887542467778888888899999999999999987643 444333
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=9.4e-14 Score=119.87 Aligned_cols=202 Identities=8% Similarity=0.014 Sum_probs=117.5
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHH
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQ 142 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (481)
.+...|..+...+...|++++|...|+++.+. ++.+..++..+...+...|++++|+..++.+.+.. +.+...+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 95 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE----NKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYY 95 (243)
T ss_dssp ---------------------CCTTHHHHHTT----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHH
Confidence 45566777777778888888888888888775 33336777777778888888888888888777654 23556666
Q ss_pred HHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcC
Q 042941 143 GLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKAR 222 (481)
Q Consensus 143 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~ 222 (481)
.+...+...|++++|...+++.....+.+...+..+...+. ..|++++|...++++...... +...+..+...+...|
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV-KLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEG 173 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcC
Confidence 66677777777777777776654444455566666666666 667777777766666554322 4455566666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 223 NLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 223 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
++++|...++.+.+.. +.+..++..+..+|...|++++|...++++.+.
T Consensus 174 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 6666666666666553 334556666666666666666666666666554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.9e-13 Score=118.22 Aligned_cols=234 Identities=12% Similarity=-0.039 Sum_probs=128.4
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--HHhHHHH
Q 042941 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG--IEDFQGL 144 (481)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 144 (481)
.+......+...|++++|...|++..+. ++.+..++..+...+...|++++|+..++...+....|+ ..+|..+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAK----KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHT----TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 3444555556666666666666666554 222234555555566666666666666666655221111 2225556
Q ss_pred HHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCH
Q 042941 145 LSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNL 224 (481)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~ 224 (481)
..++...|++++|...|++.....+.+...+..+...+. ..|++++|...|++..+... .+...+..+...+...+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY-NKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHH
Confidence 666666666666666666544434445556666666666 66666666666666555422 1344444444233334466
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHcC-CCCC------hhhHHHHHHHHHhcCCH
Q 042941 225 HKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRL---VKDAISLMKSMEEKG-VAPN------VVTYNSLIKPLCKARKL 294 (481)
Q Consensus 225 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~ 294 (481)
++|...|+.+.+.. +.+...+..+..++...|+ +++|...+++..+.. ..|+ ...|..+...|...|++
T Consensus 159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 66666666666553 3334555555555655555 555666666554431 1112 13455566666666777
Q ss_pred HHHHHHHHHHHHC
Q 042941 295 DEARQAFDEMLQR 307 (481)
Q Consensus 295 ~~a~~~~~~m~~~ 307 (481)
++|...|++..+.
T Consensus 238 ~~A~~~~~~al~~ 250 (272)
T 3u4t_A 238 VKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 7777777766654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-13 Score=121.80 Aligned_cols=225 Identities=12% Similarity=-0.047 Sum_probs=136.9
Q ss_pred ccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhh
Q 042941 77 KVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQD 156 (481)
Q Consensus 77 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 156 (481)
..|++++|+..|+.+.+.....++.+..++..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346667777777776665322222345566666667777777777777777766643 2355666667777777777777
Q ss_pred HHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 157 AEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKR 236 (481)
Q Consensus 157 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 236 (481)
|...|++.....|.+...+..+...+. ..|++++|...|+.+.+.. |+.......+..+...|++++|...+.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALY-YGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHH-HhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 777776654444455666777777777 6777777777777766642 2322333333444556777777777766655
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 237 MGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAP---NVVTYNSLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 237 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
.. +++...+ .++..+...++.++|...+....+..... +..++..+...|...|++++|...|++..+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 42 3333333 35555666666677777776664432110 1455666677777777777777777777664
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.7e-13 Score=115.95 Aligned_cols=240 Identities=10% Similarity=-0.011 Sum_probs=152.0
Q ss_pred hHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc--HHhHHHHHHH
Q 042941 140 DFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYD--VVSFSCIISC 217 (481)
Q Consensus 140 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~ll~~ 217 (481)
.+......+...|++++|+..|++.....|.+...+..+...+. ..|++++|...++.....+..++ ..+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYY-ELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHH-HTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 33445555666666666666666544444445556666666666 67777777777777666321111 2336667777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 042941 218 YSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEA 297 (481)
Q Consensus 218 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 297 (481)
+...|++++|...|+...+.. +.+..++..+..+|...|++++|...|++..+.... +...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777654 345567777777777888888888877777665332 455555555233344578888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHC
Q 042941 298 RQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQ---FGNVFKVWNEISEN 374 (481)
Q Consensus 298 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~ 374 (481)
...|++..+.. +.+...+..+...+...|+ +++|...+++..+.
T Consensus 162 ~~~~~~a~~~~---------------------------------p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 162 DSSFVKVLELK---------------------------------PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp HHHHHHHHHHS---------------------------------TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhC---------------------------------ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 88877776642 1223445555566666666 77777777776552
Q ss_pred C-CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 042941 375 G-NGPD------RSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417 (481)
Q Consensus 375 ~-~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 417 (481)
. ..|+ ...|..+...|.+.|++++|.+.|++..+. .|+...
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 256 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNKK 256 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHHH
Confidence 1 1122 246777888888888888888888888764 455443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=9.7e-13 Score=120.55 Aligned_cols=233 Identities=6% Similarity=-0.031 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhcCCCCCHHhHHH
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHD-VGRAINAFYAYKRFKFAVGIEDFQG 143 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (481)
..+|..+..++.+.|++++|+..|+...+. ++.+..+|..+...+...|+ +++|+..|+++.+.+. -+...|..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l----~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~ 171 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL----NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh----CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHH
Confidence 567888889999999999999999999886 44558899999999999996 9999999999998763 37788999
Q ss_pred HHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHh-cC
Q 042941 144 LLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSK-AR 222 (481)
Q Consensus 144 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~-~~ 222 (481)
+..++...|++++|+..|++.....|.+...|..+..++. ..|++++|+..|+++.+.... +...|+.+..++.+ .|
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~-~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQ-EFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcC
Confidence 9999999999999999999876666778899999999999 899999999999999987554 67788888888888 56
Q ss_pred CHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---
Q 042941 223 NLHKV-----LRLFDQMKRMGIECDRKVYNAVIHALAKGR--LVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKAR--- 292 (481)
Q Consensus 223 ~~~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--- 292 (481)
..++| +..|+...... +-+...|..+..++...| ++++|...+.++ +.. +.+...+..+...|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccc
Confidence 54666 57888888764 456778888888888888 688999999888 433 336677888888888864
Q ss_pred ------CHHHHHHHHHHH-HHC
Q 042941 293 ------KLDEARQAFDEM-LQR 307 (481)
Q Consensus 293 ------~~~~a~~~~~~m-~~~ 307 (481)
.+++|..+|+.+ .+.
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHHh
Confidence 258899999998 554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-13 Score=120.90 Aligned_cols=246 Identities=8% Similarity=-0.097 Sum_probs=188.1
Q ss_pred cCHHHHHHHHHHhhhCCCCC--CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHH
Q 042941 43 NDWEAAFTFFLWAGKQSGYA--HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVG 120 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~ 120 (481)
++.+.|+..++.+....... .+..++..+...+...|++++|...|+.+.+. ++.+..++..+...+...|+++
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI----RPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHTTCHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHccCHH
Confidence 67789999999987553222 25788999999999999999999999999886 3334889999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 121 RAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMS 200 (481)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 200 (481)
+|+..|+++.+.. +.+..++..+..++...|++++|...|++.....+.+. .....+..+. ..|++++|...++...
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~-~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP-FRSLWLYLAE-QKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHH-HHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh-HHHHHHHHHH-HhcCHHHHHHHHHHHH
Confidence 9999999999865 33678899999999999999999999988655433333 3444444455 7799999999998877
Q ss_pred hcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC
Q 042941 201 QRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIE---CDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPN 277 (481)
Q Consensus 201 ~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 277 (481)
.... ++...+ .++..+...++.++|...+......... .+..++..+..+|...|++++|...|++..+.. |+
T Consensus 172 ~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~ 247 (275)
T 1xnf_A 172 EKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VH 247 (275)
T ss_dssp HHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CT
T ss_pred hcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--ch
Confidence 6532 233334 4677778888899999999887654211 125788889999999999999999999999864 32
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHH
Q 042941 278 VVTYNSLIKPLCKARKLDEARQAF 301 (481)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~a~~~~ 301 (481)
. +.....++...|++++|.+.+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 2 233355677788888887766
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=5.1e-13 Score=115.22 Aligned_cols=202 Identities=12% Similarity=0.073 Sum_probs=159.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHH
Q 042941 102 TKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNG 181 (481)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 181 (481)
++.++..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++.....+.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 36677888888999999999999999998754 34678888999999999999999999998665566678889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHH
Q 042941 182 WCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKD 261 (481)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (481)
+. ..|++++|...++++.+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++
T Consensus 101 ~~-~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 101 YV-VKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HH-HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 99 999999999999999887533 67788889999999999999999999998874 4578889999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 262 AISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
|...|+++.+.... +..++..+...|...|++++|...++++.+..
T Consensus 178 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999887543 67789999999999999999999999998764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-11 Score=108.29 Aligned_cols=224 Identities=13% Similarity=0.041 Sum_probs=186.5
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCCHH
Q 042941 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCA----VHDVGRAINAFYAYKRFKFAVGIE 139 (481)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 139 (481)
+..++..+...+...|++++|...|+...+.+ + ..++..+...+.. .+++++|+..|++..+.+ ++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~ 75 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---E---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN 75 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---C---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHH
Confidence 56788888888999999999999999888731 3 6678888888888 999999999999988865 677
Q ss_pred hHHHHHHHHHc----CCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCcccHHhH
Q 042941 140 DFQGLLSALCR----YKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNI----IGSSREAERVWMEMSQRGICYDVVSF 211 (481)
Q Consensus 140 ~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~ 211 (481)
.+..+...|.. .+++++|...|++.... .+...+..+...|. . .+++++|...|++..+.+ +...+
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~-~~~~~~~~~~~A~~~~~~a~~~~---~~~a~ 149 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYH-DGKVVTRDFKKAVEYFTKACDLN---DGDGC 149 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHH-cCCCcccCHHHHHHHHHHHHhcC---cHHHH
Confidence 88888888888 99999999999874432 26777888888888 7 899999999999988875 55667
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCChhhHHH
Q 042941 212 SCIISCYSK----ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAK----GRLVKDAISLMKSMEEKGVAPNVVTYNS 283 (481)
Q Consensus 212 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 283 (481)
..+...|.. .+++++|...|+...+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 223 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFN 223 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHH
Confidence 777788887 899999999999988875 56778888888888 999999999999988874 3667777
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCC
Q 042941 284 LIKPLCK----ARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 284 li~~~~~----~g~~~~a~~~~~~m~~~~ 308 (481)
+...|.. .+++++|...|++..+.+
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8888888 899999999999988775
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-11 Score=107.89 Aligned_cols=189 Identities=8% Similarity=0.023 Sum_probs=112.4
Q ss_pred hHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 042941 174 SFNIILNGWCNI----IGSSREAERVWMEMSQRGICYDVVSFSCIISCYSK----ARNLHKVLRLFDQMKRMGIECDRKV 245 (481)
Q Consensus 174 ~~~~l~~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 245 (481)
.+..+...+. . .+++++|...|++..+.+ +...+..+...|.. .+++++|...|+...+.+ +...
T Consensus 40 a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 112 (273)
T 1ouv_A 40 GCFNLGVLYY-QGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEG 112 (273)
T ss_dssp HHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHH-cCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccH
Confidence 3444444444 4 555555555555555543 44455555555555 666666666666665543 4555
Q ss_pred HHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042941 246 YNAVIHALAK----GRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCK----ARKLDEARQAFDEMLQRGISPTIRTYH 317 (481)
Q Consensus 246 ~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~ 317 (481)
+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+
T Consensus 113 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--------- 180 (273)
T 1ouv_A 113 CASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--------- 180 (273)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------
Confidence 5556666666 666666666666666543 34455555555555 666666666666655432
Q ss_pred HHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-
Q 042941 318 AFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSR----WRQFGNVFKVWNEISENGNGPDRSSYTALIHALFL- 392 (481)
Q Consensus 318 ~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 392 (481)
+...+..+...|.. .+++++|...+++..+.+ +...+..+...|.+
T Consensus 181 --------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 181 --------------------------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNG 231 (273)
T ss_dssp --------------------------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTT
T ss_pred --------------------------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcC
Confidence 12344445555666 677777777777776653 25566666777776
Q ss_pred ---cCCHHHHHHHHHHHHHCC
Q 042941 393 ---NGKLEEAHQYYMEMKEKQ 410 (481)
Q Consensus 393 ---~g~~~~A~~~~~~m~~~~ 410 (481)
.+++++|.+.|++..+.|
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHT
T ss_pred CCcccCHHHHHHHHHHHHHcC
Confidence 777777777777776643
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-12 Score=118.43 Aligned_cols=252 Identities=9% Similarity=0.020 Sum_probs=192.5
Q ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCC-hhhHHHHHhhccCCCCCchHhHHHH
Q 042941 100 LVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKN-VQDAEHLMFCNKDVFPFNTKSFNII 178 (481)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~l 178 (481)
+....+|..+...+...|++++|+..++++.+.+ +-+..+|+.+..++...|+ +++|+..|++.....|.+...|+.+
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~ 172 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 3346788888888999999999999999999865 3367788889999999996 9999999988766667788889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-CC
Q 042941 179 LNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAK-GR 257 (481)
Q Consensus 179 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g 257 (481)
...+. ..|++++|+..|+++...... +...|..+..++.+.|++++|+..++.+.+.. +-+...|+.+..++.. .|
T Consensus 173 g~~~~-~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 173 RVLVE-WLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHH-HHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHH-HccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcC
Confidence 99988 899999999999998887544 67788888889999999999999999998875 4577888888888888 66
Q ss_pred ChHHH-----HHHHHHHHHcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHH
Q 042941 258 LVKDA-----ISLMKSMEEKGVAPNVVTYNSLIKPLCKAR--KLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVF 330 (481)
Q Consensus 258 ~~~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 330 (481)
..++| +..|++..+..+. +...|+.+...+...| ++++|.+.+..+ +. .
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~--~-------------------- 305 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP--S-------------------- 305 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT--T--------------------
T ss_pred cchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc--C--------------------
Confidence 65777 4788888776544 6677888888888777 577888777776 22 1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcC---------ChhHHHHHHHHH-HHCCCCCCHHHHHHHHHHHH
Q 042941 331 GLLESMRKMGCQPTNDTYIMLIKKFSRWR---------QFGNVFKVWNEI-SENGNGPDRSSYTALIHALF 391 (481)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 391 (481)
+.+...+..+...|.+.| .+++|.++++++ .+.+. .....|..+...+.
T Consensus 306 -----------p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP-~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 306 -----------HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT-IRKEYWRYIGRSLQ 364 (382)
T ss_dssp -----------CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHH
T ss_pred -----------CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHH
Confidence 334556666666666653 257888888888 55321 23345555555443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-12 Score=122.94 Aligned_cols=209 Identities=12% Similarity=0.086 Sum_probs=141.4
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-cccHHhHHHHHHHHHhcCC-----------------HHHHHH
Q 042941 172 TKSFNIILNGWCNIIGSSREAERVWMEMSQR----GI-CYDVVSFSCIISCYSKARN-----------------LHKVLR 229 (481)
Q Consensus 172 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~ll~~~~~~~~-----------------~~~a~~ 229 (481)
...+..+...+. ..|++++|...+++.... +- .....++..+...|...|+ +++|..
T Consensus 126 ~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 126 AKSSGNLGNTLK-VMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 344555556666 667777777666655433 11 1123456667777777777 778877
Q ss_pred HHHHHHHc----CC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCCHHHHHH
Q 042941 230 LFDQMKRM----GI-ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVA-PN----VVTYNSLIKPLCKARKLDEARQ 299 (481)
Q Consensus 230 ~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~ 299 (481)
.+++..+. +. .....++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|..
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 77765442 11 112346777888888899999999998887653211 11 2367788889999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----
Q 042941 300 AFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGC-QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISEN---- 374 (481)
Q Consensus 300 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 374 (481)
.+++..+... +.+. .....++..+...|...|++++|...+++..+.
T Consensus 285 ~~~~al~~~~----------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 285 HYKRTLALAV----------------------------ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHHHHHHHHH----------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----------------------------HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 9988755310 0000 011346777888999999999999999988652
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 375 GN-GPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 375 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
+. .....++..+...|.+.|++++|..++++..+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11 112447888899999999999999999998763
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-11 Score=107.89 Aligned_cols=220 Identities=5% Similarity=-0.085 Sum_probs=166.8
Q ss_pred hHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 042941 82 DTAWALIDEMRGGETGPSLVTKQTLLILIRRYCA-------VHDV-------GRAINAFYAYKRFKFAVGIEDFQGLLSA 147 (481)
Q Consensus 82 ~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 147 (481)
++|..+|++.... ++.++..|..++..+.. .|++ ++|..+|++..+.-.+-+...|..++..
T Consensus 33 ~~a~~~~~~al~~----~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLV----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 6788888888775 44457888887777653 4775 8899999998873113356678888888
Q ss_pred HHcCCChhhHHHHHhhccCCCCCchH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHH-HhcCCHH
Q 042941 148 LCRYKNVQDAEHLMFCNKDVFPFNTK-SFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCY-SKARNLH 225 (481)
Q Consensus 148 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~-~~~~~~~ 225 (481)
+.+.|++++|..+|++.....|.+.. .|..+...+. +.|++++|..+|++..+.+.. +...|....... ...|+++
T Consensus 109 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 109 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHH
T ss_pred HHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999886654444454 7888888888 889999999999988876432 334444333332 2368999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCC--ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 042941 226 KVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKG-VAP--NVVTYNSLIKPLCKARKLDEARQAFD 302 (481)
Q Consensus 226 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~ 302 (481)
+|..+|+...+.. +.+...|..++..+.+.|++++|..+|++..+.. +.| ....|..++..+.+.|+.+.|..+++
T Consensus 187 ~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 187 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999888763 4467888888899999999999999999998863 344 45678888888888999999999999
Q ss_pred HHHHCC
Q 042941 303 EMLQRG 308 (481)
Q Consensus 303 ~m~~~~ 308 (481)
.+.+..
T Consensus 266 ~a~~~~ 271 (308)
T 2ond_A 266 RRFTAF 271 (308)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 887753
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-11 Score=116.24 Aligned_cols=337 Identities=12% Similarity=0.024 Sum_probs=216.4
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCCh---hHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcC-
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKF---DTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH- 117 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~- 117 (481)
.++.++|++.|+..... | +..++..+...+...|+. ++|...|+...+. + +.++..+...+...+
T Consensus 16 ~g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~---~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----S---PRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHH-T---CCTGGGTCC-----------------------------------CHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----C---HHHHHHHHHHHHhCCC
Confidence 57889999999998643 3 445566677777778888 8999999998864 3 456666666454544
Q ss_pred ----CHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhh---HHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHH
Q 042941 118 ----DVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQD---AEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSR 190 (481)
Q Consensus 118 ----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (481)
++++|+..|++..+.|. +..+..|...|...+..+. +.+.+...... .+......+...|. ..+.++
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~--g~~~a~~~Lg~~y~-~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA--GYPEAGLAQVLLYR-TQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH--TCTTHHHHHHHHHH-HHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCcc
Confidence 78999999999998663 2366677777776665443 44444432211 23456666777777 666444
Q ss_pred ----HHHHHHHHHHhcCCcccHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----CCh
Q 042941 191 ----EAERVWMEMSQRGICYDVVSFSCIISCYSKAR---NLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKG----RLV 259 (481)
Q Consensus 191 ----~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~ 259 (481)
.+..+++..... +...+..+...|...| ++++|+..|+...+.| .++...+..+...|... +++
T Consensus 159 ~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 159 QHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp GGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred cCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCH
Confidence 444444444332 3347788888898999 8999999999999987 55666666777777655 799
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhch----hHHHHH
Q 042941 260 KDAISLMKSMEEKGVAPNVVTYNSLIKP-L--CKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTG----EEVFGL 332 (481)
Q Consensus 260 ~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----~~~~~~ 332 (481)
++|...|++.. . -+...+..+-.. | ...+++++|...|++..+.| +...+..+-..|... .+..+.
T Consensus 234 ~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A 306 (452)
T 3e4b_A 234 KTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYYEGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred HHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 99999999987 3 355666666666 3 46899999999999999887 455555555555421 144444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 042941 333 LESMRKMGCQPTNDTYIMLIKKFSR----WRQFGNVFKVWNEISENGNGPDRSSYTALIHALFL----NGKLEEAHQYYM 404 (481)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 404 (481)
+..+.+.- +-+...+..+...|.. ..++++|...|++..+.|. ...+..|...|.. ..+.++|..+|+
T Consensus 307 ~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 382 (452)
T 3e4b_A 307 EAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQ 382 (452)
T ss_dssp HHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 44444444 5677777778777766 4489999999999988764 3345566666654 458999999999
Q ss_pred HHHHCCC
Q 042941 405 EMKEKQL 411 (481)
Q Consensus 405 ~m~~~~~ 411 (481)
...+.|.
T Consensus 383 ~A~~~g~ 389 (452)
T 3e4b_A 383 LAKAQDT 389 (452)
T ss_dssp HHHTTCC
T ss_pred HHHHCCC
Confidence 9998774
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.5e-13 Score=123.26 Aligned_cols=303 Identities=12% Similarity=-0.002 Sum_probs=194.4
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCC
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLV--TKQTLLILIRRYCAVHDVGRAINAFYAYKRF----KFAV 136 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~ 136 (481)
.....+......+...|++++|...|++..+.+ |+.. ...++..+...+...|++++|...+++.... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 456667777888888899999999998887752 2211 1356777888888889999998888876532 2112
Q ss_pred -CHHhHHHHHHHHHcCCChhhHHHHHhhccCCC------CCchHhHHHHHHHHHHhcCC--------------------H
Q 042941 137 -GIEDFQGLLSALCRYKNVQDAEHLMFCNKDVF------PFNTKSFNIILNGWCNIIGS--------------------S 189 (481)
Q Consensus 137 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~--------------------~ 189 (481)
...++..+...+...|++++|...+++..... +....++..+...+. ..|+ +
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH-AKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH-HcCCcccccccchhhhhhhhHHHHH
Confidence 24466777788888888888888876632211 111346667777777 7788 8
Q ss_pred HHHHHHHHHHHhc----CCcc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCCh
Q 042941 190 REAERVWMEMSQR----GICY-DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGI-ECD----RKVYNAVIHALAKGRLV 259 (481)
Q Consensus 190 ~~a~~~~~~~~~~----g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~ 259 (481)
++|...+++.... +..+ ...++..+...+...|++++|...+++..+... .++ ..++..+...|...|++
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 8888887765432 1111 234667777788888888888888887765310 111 23667777788888888
Q ss_pred HHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHH
Q 042941 260 KDAISLMKSMEEKGVA-PN----VVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLE 334 (481)
Q Consensus 260 ~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~ 334 (481)
++|...+++..+.... ++ ..++..+...|...|++++|...+++..+...
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~------------------------- 298 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ------------------------- 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH-------------------------
Confidence 8888888876543111 01 44666777778888888888888877654210
Q ss_pred HHHHcCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCH
Q 042941 335 SMRKMGC-QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISEN----GNGP-DRSSYTALIHALFLNGKL 396 (481)
Q Consensus 335 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~ 396 (481)
+.+. .....++..+...|...|++++|...+++..+. +..+ ...++..+...+...|+.
T Consensus 299 ---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 299 ---ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp ---HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ---hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 0000 001335666777778888888888888776542 1111 133455566666666654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.2e-12 Score=119.32 Aligned_cols=277 Identities=11% Similarity=0.041 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC----HHhHHHHHHHHHcCCChhhHHHHHhhccC-----C-CCCch
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG----IEDFQGLLSALCRYKNVQDAEHLMFCNKD-----V-FPFNT 172 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~-~~~~~ 172 (481)
...+......+...|++++|+..|+++.+.+.. + ..++..+...+...|++++|...+++... + .+...
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 667778888999999999999999999986422 3 35678888999999999999999876321 1 12235
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----c-ccHHhHHHHHHHHHhcCC--------------------HHHH
Q 042941 173 KSFNIILNGWCNIIGSSREAERVWMEMSQRGI----C-YDVVSFSCIISCYSKARN--------------------LHKV 227 (481)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~----~-~~~~~~~~ll~~~~~~~~--------------------~~~a 227 (481)
.++..+...+. ..|++++|...+++...... . ....++..+...+...|+ +++|
T Consensus 88 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 88 KASGNLGNTLK-VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 56778888888 89999999999988765411 1 114477888889999999 9999
Q ss_pred HHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCCHHHH
Q 042941 228 LRLFDQMKRM----GIEC-DRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVA-PN----VVTYNSLIKPLCKARKLDEA 297 (481)
Q Consensus 228 ~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a 297 (481)
...++...+. +..+ ...++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9998876543 2111 2346788889999999999999999988653111 11 23678888899999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 042941 298 RQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQ-PTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGN 376 (481)
Q Consensus 298 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 376 (481)
...+++..+... ..+.. ....++..+...|...|++++|...+++..+...
T Consensus 247 ~~~~~~al~~~~----------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 247 SEYYKKTLLLAR----------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HHHHHHHHHHHH----------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------------------------hCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 999988764210 00000 0134677888899999999999999998865211
Q ss_pred -CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 377 -GPD----RSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 377 -~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
.++ ..++..+...|...|++++|...+++..+.
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 112 557888899999999999999999987654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=7.4e-11 Score=105.61 Aligned_cols=221 Identities=5% Similarity=-0.091 Sum_probs=177.3
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHh-------ccCCh-------hHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 042941 46 EAAFTFFLWAGKQSGYAHSTREYHTMIAILG-------KVRKF-------DTAWALIDEMRGGETGPSLVTKQTLLILIR 111 (481)
Q Consensus 46 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~~~~~~~~p~~~~~~~~~~li~ 111 (481)
+.|...|+.+.... +.+...|..++..+. +.|++ ++|..+|++..+. +.| .+...|..++.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p--~~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLK--KNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCc--ccHHHHHHHHH
Confidence 56777888876543 257888888888876 35886 8999999999883 233 34779999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCC-HH-hHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCH
Q 042941 112 RYCAVHDVGRAINAFYAYKRFKFAVG-IE-DFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSS 189 (481)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (481)
.+...|++++|..+|+++.+. .|+ .. .|..+...+.+.|++++|..+|++.....+.+...|...........|++
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCH
T ss_pred HHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCH
Confidence 999999999999999999985 343 43 79999999999999999999999976655566666654444322136999
Q ss_pred HHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHcCCChHHHHHHH
Q 042941 190 REAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMG-IEC--DRKVYNAVIHALAKGRLVKDAISLM 266 (481)
Q Consensus 190 ~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~ 266 (481)
++|..+|+...+.... +...|..++..+.+.|++++|..+|+...... ++| ....|..++....+.|+.+.|..++
T Consensus 186 ~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998876332 67788899999999999999999999999863 454 4668888999999999999999999
Q ss_pred HHHHHcCC
Q 042941 267 KSMEEKGV 274 (481)
Q Consensus 267 ~~~~~~~~ 274 (481)
+++.+..+
T Consensus 265 ~~a~~~~p 272 (308)
T 2ond_A 265 KRRFTAFR 272 (308)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcc
Confidence 99988643
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-12 Score=116.63 Aligned_cols=271 Identities=11% Similarity=0.031 Sum_probs=165.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCC----HHhHHHHHHHHHcCCChhhHHHHHhhccC------CCCCchHhHHHH
Q 042941 109 LIRRYCAVHDVGRAINAFYAYKRFKFAVG----IEDFQGLLSALCRYKNVQDAEHLMFCNKD------VFPFNTKSFNII 178 (481)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~l 178 (481)
....+...|++++|+..|+++.+.... + ...+..+...+...|++++|...+++... ..+.....+..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 334444455555555555554443211 1 23344444555555555555555443211 011123445556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC----Cc-ccHHhHHHHHHHHHhcCC--------------------HHHHHHHHHH
Q 042941 179 LNGWCNIIGSSREAERVWMEMSQRG----IC-YDVVSFSCIISCYSKARN--------------------LHKVLRLFDQ 233 (481)
Q Consensus 179 ~~~~~~~~~~~~~a~~~~~~~~~~g----~~-~~~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~ 233 (481)
...+. ..|++++|...+++..... -. ....++..+...+...|+ +++|...++.
T Consensus 90 ~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 90 GNTLK-VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 66666 6777777777776654321 11 113356666777777777 7777777766
Q ss_pred HHHc----CCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-C----ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 042941 234 MKRM----GIE-CDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVA-P----NVVTYNSLIKPLCKARKLDEARQAFDE 303 (481)
Q Consensus 234 ~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~a~~~~~~ 303 (481)
.... +.. ....++..+...+...|++++|...+++..+.... + ...++..+...+...|++++|...+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5432 111 12346777788888889999999888877643110 1 123677788888999999999999988
Q ss_pred HHHCCCC-CCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-C
Q 042941 304 MLQRGIS-PTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISEN----GN-G 377 (481)
Q Consensus 304 m~~~~~~-p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~ 377 (481)
..+.... ++. .....++..+...+...|++++|...+++..+. +. .
T Consensus 249 al~~~~~~~~~----------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 300 (338)
T 3ro2_A 249 TLLLARQLKDR----------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 300 (338)
T ss_dssp HHHHHHHTTCH----------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhhcch----------------------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH
Confidence 7542100 000 011346777888899999999999999987652 11 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 378 PDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
....++..+...|.+.|++++|..++++..+.
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 301 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 11447778899999999999999999998764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-12 Score=121.44 Aligned_cols=279 Identities=12% Similarity=-0.009 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CC-CCC
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLV--TKQTLLILIRRYCAVHDVGRAINAFYAYKRF----KF-AVG 137 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~ 137 (481)
...+..+...+...|++++|...|++..+. .|+.. ...++..+...+...|++++|+..+++..+. +. ...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 445556777888999999999999999886 23311 1257888889999999999999999888753 11 223
Q ss_pred HHhHHHHHHHHHcCCChhhHHHHHhhccCC------CCCchHhHHHHHHHHHHhcCC-----------------HHHHHH
Q 042941 138 IEDFQGLLSALCRYKNVQDAEHLMFCNKDV------FPFNTKSFNIILNGWCNIIGS-----------------SREAER 194 (481)
Q Consensus 138 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~-----------------~~~a~~ 194 (481)
..++..+...|...|++++|...+++.... .+....++..+...+. ..|+ +++|..
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH-AKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH-HcCcccccccchhhhhhhhHHHHHHHH
Confidence 466788889999999999999998774321 2233457778888888 8999 999999
Q ss_pred HHHHHHhc----CCc-ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHcCCChHHHHH
Q 042941 195 VWMEMSQR----GIC-YDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIE-CD----RKVYNAVIHALAKGRLVKDAIS 264 (481)
Q Consensus 195 ~~~~~~~~----g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~ 264 (481)
.+++.... +.. ....++..+...+...|++++|...+++..+.... ++ ..++..+..+|...|++++|..
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 98876543 111 12347788889999999999999999988764210 11 2377888999999999999999
Q ss_pred HHHHHHHcCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHc
Q 042941 265 LMKSMEEKGVA-----PNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKM 339 (481)
Q Consensus 265 ~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~ 339 (481)
.+++..+.... ....++..+...|...|++++|...+++..+... +.
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----------------------------~~ 336 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ----------------------------EL 336 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------------------------HH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------------------------HC
Confidence 99988654211 1146678888899999999999999998765310 00
Q ss_pred CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 042941 340 GC-QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISEN 374 (481)
Q Consensus 340 ~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 374 (481)
+. .....++..+...|...|++++|...+++..+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 00 011346777888999999999999999988774
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-11 Score=101.37 Aligned_cols=166 Identities=14% Similarity=0.073 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHH
Q 042941 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQG 143 (481)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (481)
+..+|..+...+.+.|++++|++.|++..+. +|.+..++..+...+...|++++|+..+....... +.+...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA----DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHH
Confidence 3445555555555555555555555555544 22234555555555555555555555555554432 123333444
Q ss_pred HHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCC
Q 042941 144 LLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARN 223 (481)
Q Consensus 144 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~ 223 (481)
+...+...++++.+...+.+.....|.+...+..+...+. ..|++++|++.|++..+.... +..+|..+..+|.+.|+
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD-SMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCC
Confidence 4444444444444444444433333333444444444444 444444444444444433221 33344444444444444
Q ss_pred HHHHHHHHHHHHH
Q 042941 224 LHKVLRLFDQMKR 236 (481)
Q Consensus 224 ~~~a~~~~~~~~~ 236 (481)
+++|...|++..+
T Consensus 157 ~~~A~~~~~~al~ 169 (184)
T 3vtx_A 157 RDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.6e-12 Score=119.42 Aligned_cols=214 Identities=11% Similarity=0.022 Sum_probs=142.0
Q ss_pred hhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCH-HHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHH
Q 042941 81 FDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDV-GRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEH 159 (481)
Q Consensus 81 ~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 159 (481)
++++...++..... ++.....+..+...+...|++ ++|+..|++..+.. +.+...|..+..+|...|++++|..
T Consensus 84 ~~~al~~l~~~~~~----~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 84 MEKTLQQMEEVLGS----AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHTT----CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhcc----CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 45566666665544 222366666666677777777 77777777766544 2245666667777777777777777
Q ss_pred HHhhccCCCCCchHhHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhc--------C
Q 042941 160 LMFCNKDVFPFNTKSFNIILNGWCNII---------GSSREAERVWMEMSQRGICYDVVSFSCIISCYSKA--------R 222 (481)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~--------~ 222 (481)
.|++..... |+...+..+...+. .. |++++|+..|++..+.... +...|..+..+|... |
T Consensus 159 ~~~~al~~~-p~~~~~~~lg~~~~-~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 159 CFSGALTHC-KNKVSLQNLSMVLR-QLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHT-TCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhhC-CCHHHHHHHHHHHH-HhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccc
Confidence 776644332 34566666666666 66 7777777777777665433 456677777777776 7
Q ss_pred CHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 042941 223 NLHKVLRLFDQMKRMGIE---CDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQ 299 (481)
Q Consensus 223 ~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 299 (481)
++++|...|+...+.. + .+...|..+..+|...|++++|...|++..+.... +...+..+...+...|++++|..
T Consensus 236 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 236 ISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777877777777753 2 36677777777777788888888888777766433 55567777777777777777777
Q ss_pred HHHHH
Q 042941 300 AFDEM 304 (481)
Q Consensus 300 ~~~~m 304 (481)
.+..+
T Consensus 314 ~~~~~ 318 (474)
T 4abn_A 314 SKGKT 318 (474)
T ss_dssp HTTTC
T ss_pred Hhccc
Confidence 66554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-11 Score=99.23 Aligned_cols=166 Identities=12% Similarity=0.058 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGW 182 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (481)
..+|..+...+...|++++|+..|++..+.+ +-++.++..+..+|.+.|++++|...+.......+.+...+..+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 6677777777777888888888887777654 235566667777777777777777777665444444555566666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHH
Q 042941 183 CNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDA 262 (481)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 262 (481)
. ..++++.+...+......... +...+..+..++.+.|++++|++.|++..+.. +.+..++..+..+|.+.|++++|
T Consensus 84 ~-~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 84 F-MIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp H-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred H-HcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 6 667777777766666554322 45556666666666666777766666666653 34556666666666666666666
Q ss_pred HHHHHHHHHc
Q 042941 263 ISLMKSMEEK 272 (481)
Q Consensus 263 ~~~~~~~~~~ 272 (481)
...|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 6666666553
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-12 Score=116.65 Aligned_cols=278 Identities=12% Similarity=-0.006 Sum_probs=196.8
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCC-CH
Q 042941 66 REYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLV--TKQTLLILIRRYCAVHDVGRAINAFYAYKRF----KFAV-GI 138 (481)
Q Consensus 66 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 138 (481)
..+......+...|++++|...|+++.+.. |+.. ....+..+...+...|++++|+..+++.... +..| ..
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 345555677788899999999998887752 2211 1356777888888889999999888876542 1111 24
Q ss_pred HhHHHHHHHHHcCCChhhHHHHHhhccCC---C---CCchHhHHHHHHHHHHhcCC--------------------HHHH
Q 042941 139 EDFQGLLSALCRYKNVQDAEHLMFCNKDV---F---PFNTKSFNIILNGWCNIIGS--------------------SREA 192 (481)
Q Consensus 139 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~---~~~~~~~~~l~~~~~~~~~~--------------------~~~a 192 (481)
.++..+...+...|++++|...+.+.... . +....++..+...+. ..|+ +++|
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH-AKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 56777888888999999999888763221 1 111336777778888 8888 8999
Q ss_pred HHHHHHHHhc----CCcc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC-CCHHHHHHHHHHHHcCCChHHH
Q 042941 193 ERVWMEMSQR----GICY-DVVSFSCIISCYSKARNLHKVLRLFDQMKRMG----IE-CDRKVYNAVIHALAKGRLVKDA 262 (481)
Q Consensus 193 ~~~~~~~~~~----g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~li~~~~~~g~~~~a 262 (481)
...+++.... +..+ ...++..+...+...|++++|...++...+.. .. ....++..+...+...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9888876542 2111 23467788889999999999999998876531 11 1123778888899999999999
Q ss_pred HHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHH
Q 042941 263 ISLMKSMEEKGVA-PN----VVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMR 337 (481)
Q Consensus 263 ~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~ 337 (481)
...+++..+.... ++ ..++..+...|...|++++|...+++..+...
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~---------------------------- 294 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ---------------------------- 294 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----------------------------
Confidence 9999987653111 11 45677788899999999999999998765310
Q ss_pred HcCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 042941 338 KMGC-QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISEN 374 (481)
Q Consensus 338 ~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 374 (481)
..+. .....++..+...|...|++++|...+++..+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 0000 111346777888999999999999999998774
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.7e-11 Score=111.29 Aligned_cols=233 Identities=9% Similarity=0.031 Sum_probs=167.0
Q ss_pred HHHHHHcCCChhhHHHHHhhccCC---CCC---chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C--CcccHHhH
Q 042941 144 LLSALCRYKNVQDAEHLMFCNKDV---FPF---NTKSFNIILNGWCNIIGSSREAERVWMEMSQR----G--ICYDVVSF 211 (481)
Q Consensus 144 ll~~~~~~~~~~~a~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~----g--~~~~~~~~ 211 (481)
....+...|++++|...|++.... .+. ...++..+...+. ..|++++|...+++..+. + ......++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY-YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 556677889999999998774332 111 3457788888888 899999999999877653 1 11124577
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHc----CC-CCChhhH
Q 042941 212 SCIISCYSKARNLHKVLRLFDQMKRMGI-ECD----RKVYNAVIHALAKGRLVKDAISLMKSMEEK----GV-APNVVTY 281 (481)
Q Consensus 212 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~ 281 (481)
+.+...|...|++++|...++...+... .++ ..++..+..+|...|++++|...+++..+. +. +....++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 8888999999999999999988775310 011 247788999999999999999999988762 22 3345678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-
Q 042941 282 NSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQ- 360 (481)
Q Consensus 282 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 360 (481)
..+...|...|++++|...+++..+.. .+.+-+.....+..+...+...|+
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~----------------------------~~~~~~~~~~~~~~l~~~~~~~~~~ 319 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYS----------------------------QKAGDVIYLSEFEFLKSLYLSGPDE 319 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH----------------------------HHHTCHHHHHHHHHHHHHHTSSCCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH----------------------------HHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 888999999999999999999875531 000101112234557777788888
Q ss_pred --hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 361 --FGNVFKVWNEISENGNGPD-RSSYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 361 --~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
+++|..++++. +..|+ ...+..+...|...|++++|..++++..+
T Consensus 320 ~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 320 EAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66677766655 22222 34677888999999999999999998765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-12 Score=115.45 Aligned_cols=241 Identities=13% Similarity=0.078 Sum_probs=167.1
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCC----CCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc------C
Q 042941 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGET----GPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRF------K 133 (481)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~ 133 (481)
+..++..+...+...|++++|..+|+++.+... ..++....++..+...+...|++++|+..+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 467888899999999999999999998876200 013334677888999999999999999999988754 2
Q ss_pred C-CCCHHhHHHHHHHHHcCCChhhHHHHHhhccCC--------CCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Q 042941 134 F-AVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDV--------FPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR-- 202 (481)
Q Consensus 134 ~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~-- 202 (481)
. +....++..+...+...|++++|...+++.... .+.....+..+...+. ..|++++|...+++....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ-NQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHH
Confidence 1 223567888899999999999999999774321 2334566788888888 999999999999988764
Q ss_pred ----CCcc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------CCCCH-------HHHHHHHHHHHcCCChHHHH
Q 042941 203 ----GICY-DVVSFSCIISCYSKARNLHKVLRLFDQMKRMG-------IECDR-------KVYNAVIHALAKGRLVKDAI 263 (481)
Q Consensus 203 ----g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~-------~~~~~li~~~~~~g~~~~a~ 263 (481)
+..| ...++..+..++...|++++|...++++.+.. ..+.. ..+..+...+...+.+.++.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 2122 34577888899999999999999999887631 11111 12222333344455566666
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 264 SLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 306 (481)
..+........ ....++..+...|...|++++|...|++..+
T Consensus 265 ~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 265 GWYKACKVDSP-TVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------CH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66766655422 2566788899999999999999999998765
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-11 Score=116.42 Aligned_cols=213 Identities=13% Similarity=0.049 Sum_probs=148.1
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCCh-hhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHH
Q 042941 118 DVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNV-QDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVW 196 (481)
Q Consensus 118 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~ 196 (481)
.+++++..++...... +.+...+..+..++...|++ ++|+..|++.....|.+...|..+...|. ..|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW-KKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 3566666666655433 34667777777888888888 88888887755445556777777888877 788888888888
Q ss_pred HHHHhcCCcccHHhHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--------CCh
Q 042941 197 MEMSQRGICYDVVSFSCIISCYSKA---------RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKG--------RLV 259 (481)
Q Consensus 197 ~~~~~~g~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~ 259 (481)
++..+.. |+...+..+...+... |++++|...|++..+.. +.+...|..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 8777663 5556777777777777 78888888888877764 44567777777777777 778
Q ss_pred HHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHH
Q 042941 260 KDAISLMKSMEEKGVA--PNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESM 336 (481)
Q Consensus 260 ~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~ 336 (481)
++|...|++..+.... -+...|..+..+|...|++++|...|++..+.... +...+..+...+...++..+.++..
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888887775331 26677777777888888888888888877665422 3445555556665555555554433
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-11 Score=108.72 Aligned_cols=239 Identities=12% Similarity=0.048 Sum_probs=144.7
Q ss_pred CCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 042941 168 FPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR-------GICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM--- 237 (481)
Q Consensus 168 ~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 237 (481)
.+.+..++..+...+. ..|++++|..+++++.+. .......++..+...+...|++++|...++.....
T Consensus 23 ~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYA-SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp SCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4556677888888888 899999999999888763 22334567888888999999999999999888764
Q ss_pred ---CC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 238 ---GI-ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK------GV-APNVVTYNSLIKPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 238 ---~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 306 (481)
+. +....++..+...|...|++++|...++++.+. +. ......+..+...+...|++++|..++++..+
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 21 234567888889999999999999999988764 21 22345677888899999999999999998866
Q ss_pred C------CCCCC-HHHHHHHHHHHhch---hHHHHHHHHHHHc-------CCCCC-------HHHHHHHHHHHHhcCChh
Q 042941 307 R------GISPT-IRTYHAFLDIIRTG---EEVFGLLESMRKM-------GCQPT-------NDTYIMLIKKFSRWRQFG 362 (481)
Q Consensus 307 ~------~~~p~-~~~~~~li~~~~~~---~~~~~~~~~~~~~-------~~~~~-------~~~~~~l~~~~~~~g~~~ 362 (481)
. +..|. ...+..+...+... +++...++...+. ...+. ...+..+...+...+.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFG 261 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHH
Confidence 4 11121 12233333333222 2233333333321 00000 011111222222333344
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 363 NVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 363 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
++...+....... +.+..++..+..+|.+.|++++|.++|++..+
T Consensus 262 ~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 262 EYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444444433321 12345677777888888888888888877654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.9e-10 Score=93.12 Aligned_cols=163 Identities=10% Similarity=-0.004 Sum_probs=100.7
Q ss_pred hHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHH
Q 042941 140 DFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYS 219 (481)
Q Consensus 140 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~ 219 (481)
.+..+...+...|++++|...+++.....+.+...+..+...+. ..|++++|...++.+.+... .+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYV-KTGAVDRGTELLERSLADAP-DNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 34445555566666666666666554444455556666666666 66666666666666655422 24455666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 042941 220 KARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQ 299 (481)
Q Consensus 220 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 299 (481)
..|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHH
Confidence 6677777777666666553 345566666666666777777777777666655332 45566666666677777777777
Q ss_pred HHHHHHH
Q 042941 300 AFDEMLQ 306 (481)
Q Consensus 300 ~~~~m~~ 306 (481)
.++...+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-10 Score=107.46 Aligned_cols=309 Identities=9% Similarity=-0.016 Sum_probs=202.0
Q ss_pred CHHHHHHHHHHh-----hcCHHHHHHHHHHhhhCC-CC--CCCHHHHHHHHHHH--hccCChhHHH-----------HHH
Q 042941 30 SSELVSEVLSWV-----RNDWEAAFTFFLWAGKQS-GY--AHSTREYHTMIAIL--GKVRKFDTAW-----------ALI 88 (481)
Q Consensus 30 ~~~~~~~~l~~~-----~~~~~~a~~~~~~~~~~~-~~--~~~~~~~~~li~~~--~~~g~~~~a~-----------~~~ 88 (481)
+++.+...|... .++.+.|..+++.+.... .. .++...|-.++..- .-.+.++.+. +++
T Consensus 8 ~~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~ 87 (383)
T 3ulq_A 8 SSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLL 87 (383)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHH
Confidence 444445555432 478889998888886332 22 23344444444322 1223333344 666
Q ss_pred HHHhcCCCCCC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCC-CHHhHHHHHHHHHcCCChhhHHHHHh
Q 042941 89 DEMRGGETGPS-LVTKQTLLILIRRYCAVHDVGRAINAFYAYKRF----KFAV-GIEDFQGLLSALCRYKNVQDAEHLMF 162 (481)
Q Consensus 89 ~~~~~~~~~p~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~ 162 (481)
+.+.......+ ......+......+...|++++|+..|++..+. +..+ ...++..+..+|...|+++.|...+.
T Consensus 88 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ 167 (383)
T 3ulq_A 88 LEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYAR 167 (383)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66544210000 000111223556778899999999999998764 2112 34578889999999999999999987
Q ss_pred hccCC-------CCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCc-ccHHhHHHHHHHHHhcCCHHHHHHH
Q 042941 163 CNKDV-------FPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR----GIC-YDVVSFSCIISCYSKARNLHKVLRL 230 (481)
Q Consensus 163 ~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~ll~~~~~~~~~~~a~~~ 230 (481)
+.... .+....+++.+...|. ..|++++|...+++..+. +-. ....++..+..+|...|++++|...
T Consensus 168 ~al~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~ 246 (383)
T 3ulq_A 168 QAYEIYKEHEAYNIRLLQCHSLFATNFL-DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPY 246 (383)
T ss_dssp HHHHHHHTCSTTHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 73221 1122456788888888 999999999999887654 111 1124788899999999999999999
Q ss_pred HHHHHHc----CC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC----CCCChhhHHHHHHHHHhcCC---HHHHH
Q 042941 231 FDQMKRM----GI-ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKG----VAPNVVTYNSLIKPLCKARK---LDEAR 298 (481)
Q Consensus 231 ~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~ 298 (481)
+++..+. +. +....++..+..+|.+.|++++|...+++..+.. -+.....+..+...|...|+ +++|+
T Consensus 247 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al 326 (383)
T 3ulq_A 247 FKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFF 326 (383)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHH
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 9998772 33 3346678889999999999999999999876531 11122234556667777777 55555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042941 299 QAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISE 373 (481)
Q Consensus 299 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 373 (481)
.++++. +.. +.....+..+...|...|++++|...+++..+
T Consensus 327 ~~~~~~---~~~-------------------------------~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 327 DFLESK---MLY-------------------------------ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHT---TCH-------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHC---cCH-------------------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555543 111 11233566788899999999999999998765
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.32 E-value=9.2e-10 Score=101.45 Aligned_cols=267 Identities=9% Similarity=-0.096 Sum_probs=159.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHH----hHHHHHHHHHcCCChhhHHHHHhhccCC---C-CC--chHhHHHHHHH
Q 042941 112 RYCAVHDVGRAINAFYAYKRFKFAVGIE----DFQGLLSALCRYKNVQDAEHLMFCNKDV---F-PF--NTKSFNIILNG 181 (481)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~-~~--~~~~~~~l~~~ 181 (481)
.+...|++++|...+++........+.. ++..+...+...|++++|...+.+.... . .+ ...++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3444555666655555554432111111 2334445555556666665555442110 0 00 11234455566
Q ss_pred HHHhcCCHHHHHHHHHHHHhc----CCc--c-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHH
Q 042941 182 WCNIIGSSREAERVWMEMSQR----GIC--Y-DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIE----CDRKVYNAVI 250 (481)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~----g~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~li 250 (481)
+. ..|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... ....++..+.
T Consensus 103 ~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 103 LF-AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HH-HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 66 778888888887766543 211 2 2345566777788888888888888887664211 1234567777
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 042941 251 HALAKGRLVKDAISLMKSMEEKGVAPNV-VTYN-----SLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIR 324 (481)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 324 (481)
..+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+.
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~------------ 249 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN------------ 249 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcc------------
Confidence 8888889999999888887654222211 1122 223346788999999988887654321110
Q ss_pred chhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHH
Q 042941 325 TGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISEN----GNGPDR-SSYTALIHALFLNGKLEEA 399 (481)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A 399 (481)
......+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|
T Consensus 250 -----------------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 312 (373)
T 1hz4_A 250 -----------------HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 312 (373)
T ss_dssp -----------------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred -----------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHH
Confidence 011224556677788889999999988877542 222222 2566677788899999999
Q ss_pred HHHHHHHHH
Q 042941 400 HQYYMEMKE 408 (481)
Q Consensus 400 ~~~~~~m~~ 408 (481)
...+++...
T Consensus 313 ~~~l~~al~ 321 (373)
T 1hz4_A 313 QRVLLDALK 321 (373)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.3e-11 Score=112.45 Aligned_cols=312 Identities=11% Similarity=0.019 Sum_probs=194.8
Q ss_pred HHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCH---HHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 042941 71 MIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDV---GRAINAFYAYKRFKFAVGIEDFQGLLSA 147 (481)
Q Consensus 71 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 147 (481)
+...+.+.|++++|.++|+...+.|. +.++..+...+...|+. ++|+..|++..+. ++..+..+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~------~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~ 78 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY------SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC------CTGGGTCC--------------------------------CHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHH
Confidence 56677789999999999999977652 33455566666677877 8999999988753 55566667775
Q ss_pred HHcCC-----ChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCcccHHhHHHHHHHHH
Q 042941 148 LCRYK-----NVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSS---REAERVWMEMSQRGICYDVVSFSCIISCYS 219 (481)
Q Consensus 148 ~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~ 219 (481)
+...+ +.++|...|++..... +...+..+...|. ..+.. .++.+.+......| +......+...|.
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYL-QYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYR 152 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHH-HCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHH
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-hCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 55554 7789999998854322 2336667777776 54443 33455555555444 3445666777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----C
Q 042941 220 KARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGR---LVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKA----R 292 (481)
Q Consensus 220 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g 292 (481)
..+.++++......+.+.-...++..+..+...|...| +.++|...|++..+.|.. +...+..+...|... +
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSC
T ss_pred cCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCC
Confidence 77755444443333332212233448888888999999 999999999999998754 555556677777554 7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H-----hchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----Ch
Q 042941 293 KLDEARQAFDEMLQRGISPTIRTYHAFLDI-I-----RTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWR-----QF 361 (481)
Q Consensus 293 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~ 361 (481)
++++|..+|+... .|. ...+..+-.. + .+..++...++...+.| +...+..+...|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~g~---~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PGY---PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-GGS---THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-CCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 9999999999988 443 3333333333 2 23345577777766666 5667777777776 55 99
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 042941 362 GNVFKVWNEISENGNGPDRSSYTALIHALFL----NGKLEEAHQYYMEMKEKQL 411 (481)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 411 (481)
++|...|++.. . -+...+..|...|.. ..++++|..+|++..+.|.
T Consensus 304 ~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 304 KAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 99999999887 3 467777778877776 3499999999999887664
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.6e-10 Score=93.41 Aligned_cols=163 Identities=10% Similarity=-0.001 Sum_probs=84.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHh
Q 042941 106 LLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNI 185 (481)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 185 (481)
+..+...+...|++++|+..++.+.+.. +.+...+..+...+...|++++|...+++.....+.+...+..+...+. .
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV-Q 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-H
Confidence 3334444444444444444444443322 1233344444444444444444444444433223334445555555555 5
Q ss_pred cCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 042941 186 IGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISL 265 (481)
Q Consensus 186 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 265 (481)
.|++++|...++.+..... .+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...
T Consensus 89 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666665555422 244555556666666666666666666665553 33455666666666666666666666
Q ss_pred HHHHHHc
Q 042941 266 MKSMEEK 272 (481)
Q Consensus 266 ~~~~~~~ 272 (481)
++++.+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 6665543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=9.3e-10 Score=101.60 Aligned_cols=313 Identities=9% Similarity=-0.010 Sum_probs=192.3
Q ss_pred CCCHHHHHHHHHHH--hccCChhHHHHHHHHHhcC--CCCCCcccHHHHHHHHHH--HHhcCCHHHH---------HHHH
Q 042941 62 AHSTREYHTMIAIL--GKVRKFDTAWALIDEMRGG--ETGPSLVTKQTLLILIRR--YCAVHDVGRA---------INAF 126 (481)
Q Consensus 62 ~~~~~~~~~li~~~--~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~~~~li~~--~~~~~~~~~a---------~~~~ 126 (481)
.|+..+-+.+-.-| .+.+++++|..+++++.+. .+..+. ....|-.++.. ....+..... ...+
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~-~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQ-DLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCH-HHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 34555555555555 5677778887777776442 111121 12222333221 1111121122 2444
Q ss_pred HHHhhcCCCCCH----HhHHHHHHHHHcCCChhhHHHHHhhccCC---CC---CchHhHHHHHHHHHHhcCCHHHHHHHH
Q 042941 127 YAYKRFKFAVGI----EDFQGLLSALCRYKNVQDAEHLMFCNKDV---FP---FNTKSFNIILNGWCNIIGSSREAERVW 196 (481)
Q Consensus 127 ~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~l~~~~~~~~~~~~~a~~~~ 196 (481)
+.+.....+.+. ..+......+...|++++|...|++.... .+ ....++..+...|. ..|+++.|...+
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~-~~~~~~~A~~~~ 164 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY-HMKQTHVSMYHI 164 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH-HcCCcHHHHHHH
Confidence 444332111111 11223445567888999999888774322 11 13456777888888 899999999988
Q ss_pred HHHHhc----CC-cc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCChHHHHHH
Q 042941 197 MEMSQR----GI-CY-DVVSFSCIISCYSKARNLHKVLRLFDQMKRM----GIEC-DRKVYNAVIHALAKGRLVKDAISL 265 (481)
Q Consensus 197 ~~~~~~----g~-~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~ 265 (481)
++..+. +. .+ ...+++.+..+|...|++++|.+.++...+. +..+ ...++..+..+|...|++++|...
T Consensus 165 ~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 876553 11 11 2457778888999999999999999887653 2111 234677888899999999999999
Q ss_pred HHHHHH-----cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcC
Q 042941 266 MKSMEE-----KGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMG 340 (481)
Q Consensus 266 ~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~ 340 (481)
|++..+ .... ...++..+...|.+.|++++|...+++..+..... +
T Consensus 245 ~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------------------------~ 295 (378)
T 3q15_A 245 FQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR----------------------------S 295 (378)
T ss_dssp HHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT----------------------------C
T ss_pred HHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc----------------------------C
Confidence 998876 3332 36677888889999999999999999876642111 0
Q ss_pred CCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 341 CQPTNDTYIMLIKKFSRWRQ---FGNVFKVWNEISENGNGPD-RSSYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 341 ~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
.+.....+..+...+...++ +.+|...++. .+..|+ ...+..+...|...|++++|...|++..+
T Consensus 296 ~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 296 HKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11112234445555666666 6666666654 222222 33566788888999999999999888754
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.9e-09 Score=97.21 Aligned_cols=305 Identities=10% Similarity=-0.010 Sum_probs=198.7
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC----HHhH
Q 042941 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLV-TKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFA-VG----IEDF 141 (481)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~ 141 (481)
.......+...|++++|...+++........++. ...++..+...+...|++++|...+++....... ++ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444456667899999999999877653111100 1225666677788899999999999887643211 12 2335
Q ss_pred HHHHHHHHcCCChhhHHHHHhhccC-----CCC--C-chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc----ccHH
Q 042941 142 QGLLSALCRYKNVQDAEHLMFCNKD-----VFP--F-NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGIC----YDVV 209 (481)
Q Consensus 142 ~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~--~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~ 209 (481)
..+...+...|++++|...+++... +.+ | ....+..+...+. ..|++++|...+++....... ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW-AWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 6677888999999999999876321 111 2 3345666777888 899999999999987654221 1235
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHcCCChHHHHHHHHHHHHcCCCCC---hhh
Q 042941 210 SFSCIISCYSKARNLHKVLRLFDQMKRMGIECD--RKVYN----AVIHALAKGRLVKDAISLMKSMEEKGVAPN---VVT 280 (481)
Q Consensus 210 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~ 280 (481)
++..+...+...|++++|...+++.....-.++ ..... ..+..+...|++++|...+++.......+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 677788889999999999999998876421211 11111 233457799999999999998875432211 224
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcC
Q 042941 281 YNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTN-DTYIMLIKKFSRWR 359 (481)
Q Consensus 281 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g 359 (481)
+..+...+...|++++|...++...... ...+..++. ..+..+..++...|
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~----------------------------~~~~~~~~~~~~~~~la~~~~~~g 307 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENA----------------------------RSLRLMSDLNRNLLLLNQLYWQAG 307 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------------------HHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH----------------------------HhCcchhhHHHHHHHHHHHHHHhC
Confidence 5677788899999999999998875431 011111111 24555677788999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 360 QFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
+.++|...+++...... . ...+..+...| +....+++.+...
T Consensus 308 ~~~~A~~~l~~al~~~~--~----~g~~~~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 308 RKSDAQRVLLDALKLAN--R----TGFISHFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp CHHHHHHHHHHHHHHHH--H----HCCCHHHHTTH--HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhc--c----ccHHHHHHHcc--HHHHHHHHHHHhC
Confidence 99999999988765210 0 11223334444 4555666666553
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.1e-10 Score=112.38 Aligned_cols=165 Identities=13% Similarity=0.016 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGW 182 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (481)
..+++.+...+...|++++|+..|++..+.. +-+..++..+..+|.+.|++++|+..|++.....|.+...|+.+...+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4555555555555566666666555555543 123455555555556666666666555554333344555666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHH
Q 042941 183 CNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDA 262 (481)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 262 (481)
. ..|++++|++.|++..+.... +...|+.+..+|...|++++|++.|++..+.. +-+...+..+..++...|++++|
T Consensus 88 ~-~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 88 K-EMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp H-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred H-HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 6 666666666666666655322 45566666666777777777777777666653 33456666677777777777766
Q ss_pred HHHHHHHHH
Q 042941 263 ISLMKSMEE 271 (481)
Q Consensus 263 ~~~~~~~~~ 271 (481)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-07 Score=91.65 Aligned_cols=417 Identities=12% Similarity=0.068 Sum_probs=256.2
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhh--cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCC---hhHHHHHHHHH
Q 042941 17 EMRNKIEECGIKVSSELVSEVLSWVR--NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRK---FDTAWALIDEM 91 (481)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~ 91 (481)
.+.+.+.+. +-+.......+..+. +..+.+..+|+.+.... +.+...|...+..-.+.|+ ++.+..+|++.
T Consensus 54 ~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 54 KLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 444555543 347778888887763 46778888888887665 4567788888888888888 88999999888
Q ss_pred hcCCC-CCCcccHHHHHHHHHHHHhcCCH--------HHHHHHHHHHhh-cCC-CC-CHHhHHHHHHHHHc---------
Q 042941 92 RGGET-GPSLVTKQTLLILIRRYCAVHDV--------GRAINAFYAYKR-FKF-AV-GIEDFQGLLSALCR--------- 150 (481)
Q Consensus 92 ~~~~~-~p~~~~~~~~~~li~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~ll~~~~~--------- 150 (481)
..... .|+ ...|..-+....+.++. +.+.++|+.... .|. .| +...|...+.....
T Consensus 130 l~~~~~~~s---v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 130 LSKELGNND---LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp TCSSSCCCC---HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHhcCCCCC---HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 88631 244 77777766655555443 334577776653 455 44 34677777765543
Q ss_pred CCChhhHHHHHhhccCCCCCc--hHhHHHHHHHHHHhcC-------------CHHHHHHHHHHHHhc--CCc--------
Q 042941 151 YKNVQDAEHLMFCNKDVFPFN--TKSFNIILNGWCNIIG-------------SSREAERVWMEMSQR--GIC-------- 205 (481)
Q Consensus 151 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~-------------~~~~a~~~~~~~~~~--g~~-------- 205 (481)
.++++.+..+|++... .|.. ..+|..... +....+ +++.|...+.++... ++.
T Consensus 207 q~~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLC-QPMDCLESMWQRYTQ-WEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHTT-SCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HhHHHHHHHHHHHHHh-CccHHHHHHHHHHHH-HHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 2346678888887654 2222 233333222 221111 122333444433211 111
Q ss_pred -------c-----c---HHhHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 042941 206 -------Y-----D---VVSFSCIISCYSKAR-------NLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAI 263 (481)
Q Consensus 206 -------~-----~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 263 (481)
| + ...|...+..--..+ ..+.+..+|++.... .+-+...|...+..+...|+.++|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 1 0 123444443322222 123456678777765 3557788888888888889988996
Q ss_pred -HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHH
Q 042941 264 -SLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRG---------ISPT------------IRTYHAFLD 321 (481)
Q Consensus 264 -~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---------~~p~------------~~~~~~li~ 321 (481)
.+|++..... +.+...|...+...-+.|+++.|..+|+.+.+.. ..|+ ...|...+.
T Consensus 364 r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 364 TKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 9999998753 3366667778888888999999999999887631 0132 223555554
Q ss_pred HHhc---hhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042941 322 IIRT---GEEVFGLLESMRKM-GCQPTNDTYIMLIKKFSRW-RQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKL 396 (481)
Q Consensus 322 ~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 396 (481)
...+ .+.+..++....+. + ..+...|...+..-.+. ++.+.|..+|+...+. .+.+...|...+......|+.
T Consensus 443 ~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCH
Confidence 4433 34567788877765 2 22233444333333344 4589999999998875 344677777888888889999
Q ss_pred HHHHHHHHHHHHCCCCC--CHhHHHHHHHH---HhhhhHHHHHHHHHhhcCccCC
Q 042941 397 EEAHQYYMEMKEKQLLP--EPKTDELLQDW---SYNKQFVERQIASLKAHQPQSG 446 (481)
Q Consensus 397 ~~A~~~~~~m~~~~~~p--~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~ 446 (481)
+.|..+|++.......+ ....|...+.. ++....+....+.+.+..|+++
T Consensus 521 ~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 521 SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 99999999988764322 22345555444 3444556677777777777654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.23 E-value=3e-07 Score=90.12 Aligned_cols=403 Identities=10% Similarity=0.028 Sum_probs=261.4
Q ss_pred ChhHHHHHHHhcCCCCCHHHHHHHHHHh--hcC---HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCCh-------
Q 042941 14 KRSEMRNKIEECGIKVSSELVSEVLSWV--RND---WEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKF------- 81 (481)
Q Consensus 14 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~------- 81 (481)
.++.+++.+... ++.+......-+..- .+. .+.+..+|+........+|++..|...+....+.++.
T Consensus 84 ~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~ 162 (679)
T 4e6h_A 84 QVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEA 162 (679)
T ss_dssp HHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHH
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchh
Confidence 345555555432 344555555444443 234 7889999999976554458999999999887776654
Q ss_pred -hHHHHHHHHHhc-CCC-CCCcccHHHHHHHHHHHH---------hcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 042941 82 -DTAWALIDEMRG-GET-GPSLVTKQTLLILIRRYC---------AVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALC 149 (481)
Q Consensus 82 -~~a~~~~~~~~~-~~~-~p~~~~~~~~~~li~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 149 (481)
+...++|+.... .|. .|+ +...|...+.... .+++++.+..+|++++......-..+|......-.
T Consensus 163 r~~vr~~FErAl~~vG~~d~~--s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~ 240 (679)
T 4e6h_A 163 RNIVIQAFQVVVDKCAIFEPK--SIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQ 240 (679)
T ss_dssp HHHHHHHHHHHHHHTTTTCSS--CHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccc--chHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 334577777554 344 443 3667877776543 24567889999999886322222233332221111
Q ss_pred c-------------CCChhhHHHHHhh-------ccCCCCCc-------------------hHhHHHHHHHHHHhcC---
Q 042941 150 R-------------YKNVQDAEHLMFC-------NKDVFPFN-------------------TKSFNIILNGWCNIIG--- 187 (481)
Q Consensus 150 ~-------------~~~~~~a~~~~~~-------~~~~~~~~-------------------~~~~~~l~~~~~~~~~--- 187 (481)
. ..+++.|...+.. +....+.. ...|...+..-- ..+
T Consensus 241 ~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk-~~~~~l 319 (679)
T 4e6h_A 241 DVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWES-DNKLEL 319 (679)
T ss_dssp HHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHH-TCTTCC
T ss_pred hcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHH-hCCccc
Confidence 1 1123334444432 11111110 134555554322 221
Q ss_pred ----CHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHH
Q 042941 188 ----SSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVL-RLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDA 262 (481)
Q Consensus 188 ----~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 262 (481)
..+.+..+|++...... -+...|-..+..+...|+.++|. ++|+..... .+.+...|...+....+.|+++.|
T Consensus 320 ~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~a 397 (679)
T 4e6h_A 320 SDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEI 397 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHH
Confidence 13445677888776532 36777888888888889998996 999999875 456777788888899999999999
Q ss_pred HHHHHHHHHcCC---------CCC------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCCCHHHHHHH
Q 042941 263 ISLMKSMEEKGV---------APN------------VVTYNSLIKPLCKARKLDEARQAFDEMLQR-G-ISPTIRTYHAF 319 (481)
Q Consensus 263 ~~~~~~~~~~~~---------~~~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~-~~p~~~~~~~l 319 (481)
..+|+.+.+... .|+ ...|...+....+.|+.+.|..+|....+. + ..+......+.
T Consensus 398 R~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~ 477 (679)
T 4e6h_A 398 ETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAY 477 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 999999876410 132 235777777778889999999999999886 3 22333333344
Q ss_pred HHHHh-c-hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCC
Q 042941 320 LDIIR-T-GEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGP--DRSSYTALIHALFLNGK 395 (481)
Q Consensus 320 i~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 395 (481)
+.... . .+.+.++++...+. .+.+...+...+......|+.+.|+.+|++.......+ ....|...+.--.+.|+
T Consensus 478 lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 478 IEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC
T ss_pred HHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 44332 2 46778888887776 45566777888888888999999999999998864322 34578888888889999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 042941 396 LEEAHQYYMEMKEKQLLPEPKTDELLQDWS 425 (481)
Q Consensus 396 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 425 (481)
.+.+.++.+++.+. .|+......+.+-+
T Consensus 557 ~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 557 LNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp SHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 99999999999985 46655555555543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.7e-10 Score=111.09 Aligned_cols=166 Identities=11% Similarity=0.078 Sum_probs=148.1
Q ss_pred CHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHH
Q 042941 137 GIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIIS 216 (481)
Q Consensus 137 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 216 (481)
++.+|+.|..++.+.|++++|+..|++.....|.+...++.+...|. +.|++++|+..|++..+.... +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~-~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ-QQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 46789999999999999999999999876656677889999999999 999999999999999887443 5778999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 042941 217 CYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDE 296 (481)
Q Consensus 217 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 296 (481)
++...|++++|++.|++..+.. +-+...|..+..+|.+.|++++|+..|++..+.... +...+..+..+|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999999875 457889999999999999999999999999987554 67889999999999999999
Q ss_pred HHHHHHHHHH
Q 042941 297 ARQAFDEMLQ 306 (481)
Q Consensus 297 a~~~~~~m~~ 306 (481)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988754
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-09 Score=92.27 Aligned_cols=133 Identities=8% Similarity=-0.062 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGW 182 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (481)
+..+......+...|++++|+..|+...+...+++...+..+..++...|++++|+..|++.....|.+...+..+...+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 34444444444455555555555554444332234444444444555555555555555443333333444455555555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcccH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042941 183 CNIIGSSREAERVWMEMSQRGICYDV-------VSFSCIISCYSKARNLHKVLRLFDQMKRM 237 (481)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 237 (481)
. ..|++++|...+++..+.... +. ..|..+...+...|++++|...|+...+.
T Consensus 87 ~-~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 87 R-DMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp H-HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred H-HcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 5 555555555555554443221 12 23444444555555555555555555543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.18 E-value=3.5e-10 Score=99.60 Aligned_cols=229 Identities=14% Similarity=0.057 Sum_probs=146.9
Q ss_pred ccCChhHHHHHHHHHhcCC---C-CCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc------CC-CCCHHhHHHHH
Q 042941 77 KVRKFDTAWALIDEMRGGE---T-GPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRF------KF-AVGIEDFQGLL 145 (481)
Q Consensus 77 ~~g~~~~a~~~~~~~~~~~---~-~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll 145 (481)
..|++++|+.+|++..+.- . ..++....++..+...+...|++++|+..++++.+. +. +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4566666666666554410 0 012334677888888888889999998888887754 21 22345677888
Q ss_pred HHHHcCCChhhHHHHHhhccCC--------CCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCcc-cHHh
Q 042941 146 SALCRYKNVQDAEHLMFCNKDV--------FPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR------GICY-DVVS 210 (481)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~------g~~~-~~~~ 210 (481)
.+|...|++++|...+.+.... .+.....+..+...+. ..|++++|...+++.... +..| ...+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ-NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 8888999999988888764321 2334567778888888 899999999999887664 1122 3457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHcCCChHHHHH------HHHHHHHcCCCC
Q 042941 211 FSCIISCYSKARNLHKVLRLFDQMKRM-------GIECD-RKVYNAVIHALAKGRLVKDAIS------LMKSMEEKGVAP 276 (481)
Q Consensus 211 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~li~~~~~~g~~~~a~~------~~~~~~~~~~~~ 276 (481)
+..+..++...|++++|...+++..+. ...+. ...+..+...+...+....+.. .++..... .+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 788888999999999999999888753 11222 2233333333333333222222 22211111 112
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 277 NVVTYNSLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 277 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
...++..+...|...|++++|..++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456778888999999999999999887653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.6e-09 Score=89.32 Aligned_cols=196 Identities=9% Similarity=0.015 Sum_probs=133.0
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHH
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQ 142 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (481)
.++..+......+...|++++|...|+...+....++ ...+..+...+...|++++|+..|++..+.+. .+...+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~ 80 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD---SVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYI 80 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC---cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHH
Confidence 3567777788888888888888888888877632234 56666677888888888888888888877542 2456777
Q ss_pred HHHHHHHcCCChhhHHHHHhhccCCCCCch-------HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc---HHhHH
Q 042941 143 GLLSALCRYKNVQDAEHLMFCNKDVFPFNT-------KSFNIILNGWCNIIGSSREAERVWMEMSQRGICYD---VVSFS 212 (481)
Q Consensus 143 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~ 212 (481)
.+..++...|++++|...+++.....|.+. ..|..+...+. ..|++++|+..|+...+. .|+ ...+.
T Consensus 81 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~--~p~~~~~~~~~ 157 (228)
T 4i17_A 81 GKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQ-QAGNIEKAEENYKHATDV--TSKKWKTDALY 157 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTS--SCHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHH-HhccHHHHHHHHHHHHhc--CCCcccHHHHH
Confidence 788888888888888888877555444455 44666777777 788888888888888765 343 34566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 042941 213 CIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKG 273 (481)
Q Consensus 213 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 273 (481)
.+..++...| ..+++.+...+ ..+...|.... ....+.+++|...|++..+..
T Consensus 158 ~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 158 SLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 6666665443 33444544443 23344443333 233456788888888888764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.15 E-value=8.1e-10 Score=97.19 Aligned_cols=158 Identities=13% Similarity=0.024 Sum_probs=121.2
Q ss_pred HhcCCHHHHHHHHHHHhhc-------CCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccC--------CCCCchHhHHHH
Q 042941 114 CAVHDVGRAINAFYAYKRF-------KFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKD--------VFPFNTKSFNII 178 (481)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~l 178 (481)
...|++++|+..|++..+. +.+....++..+..++...|++++|...+++... ..+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3457777777777666542 2233466788899999999999999999977432 123456678889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc-----CC--cccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-CCCCHH
Q 042941 179 LNGWCNIIGSSREAERVWMEMSQR-----GI--CYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM------G-IECDRK 244 (481)
Q Consensus 179 ~~~~~~~~~~~~~a~~~~~~~~~~-----g~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~ 244 (481)
...+. ..|++++|...+++.... +. +....++..+...+...|++++|...+++..+. + .+....
T Consensus 92 ~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 92 AVLYG-KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHH-HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 99999 999999999999987764 11 224567888999999999999999999998775 1 122356
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 245 VYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
++..+..+|...|++++|...+++..+.
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888999999999999999999988764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.14 E-value=6.6e-09 Score=95.87 Aligned_cols=233 Identities=9% Similarity=0.018 Sum_probs=171.4
Q ss_pred HHHHHHhccCChhHHHHHHHHHhcCC--CCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-----CC-CHHhH
Q 042941 70 TMIAILGKVRKFDTAWALIDEMRGGE--TGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKF-----AV-GIEDF 141 (481)
Q Consensus 70 ~li~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~ 141 (481)
.....+...|++++|...|++..+.. +..++....++..+...+...|+++.|+..+++..+... .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 34555678999999999999987642 111222356788899999999999999999998874311 11 24567
Q ss_pred HHHHHHHHcCCChhhHHHHHhhccC-----CC-CCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCcccHHhH
Q 042941 142 QGLLSALCRYKNVQDAEHLMFCNKD-----VF-PFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR----GICYDVVSF 211 (481)
Q Consensus 142 ~~ll~~~~~~~~~~~a~~~~~~~~~-----~~-~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~ 211 (481)
+.+..+|...|++++|...|.+... +. +....+++.+...|. ..|++++|...+++.... +.+....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD-RSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence 8899999999999999999977422 11 112346777888888 999999999999988761 222236678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHcCCCC-ChhhHHH
Q 042941 212 SCIISCYSKARNLHKVLRLFDQMKRMG----IECDRKVYNAVIHALAKGRL---VKDAISLMKSMEEKGVAP-NVVTYNS 283 (481)
Q Consensus 212 ~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~~~ 283 (481)
..+...+.+.|++++|...+++..+.. .+.....+..+...+...++ +.+|...++. .+..| ....+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHH
Confidence 889999999999999999999988742 12223455666667777888 6677776665 22222 2345667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 042941 284 LIKPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 284 li~~~~~~g~~~~a~~~~~~m~~ 306 (481)
+...|...|++++|...|++..+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88899999999999999998754
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.10 E-value=5.4e-08 Score=84.62 Aligned_cols=250 Identities=10% Similarity=0.006 Sum_probs=159.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCH
Q 042941 110 IRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSS 189 (481)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (481)
++-..-.|++..++.-...+ .........-.+.++|...|++... ....|....+..+. .|. ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~--------~~~~~~~~a~~~la-~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ--------DPTSKLGKVLDLYV-QFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC--------CSSSTTHHHHHHHH-HHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC--------CCCCHHHHHHHHHH-HHh-ccc--
Confidence 34455568888777733322 1111222333355777777776532 11223333333333 333 322
Q ss_pred HHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 042941 190 REAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGI-ECDRKVYNAVIHALAKGRLVKDAISLMKS 268 (481)
Q Consensus 190 ~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 268 (481)
|+..|++....+ .++..++..+..++...|++++|++++......|. .-+...+..++..+.+.|+.+.|.+.++.
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 677777776654 34555666778888899999999999988876652 23667788888999999999999999999
Q ss_pred HHHcCCCC-----ChhhHHHHHHHHHh--cC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHc
Q 042941 269 MEEKGVAP-----NVVTYNSLIKPLCK--AR--KLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKM 339 (481)
Q Consensus 269 ~~~~~~~~-----~~~~~~~li~~~~~--~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~ 339 (481)
|.+. .| +..+...+..+++. .| ++.+|..+|+++.+.
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-------------------------------- 207 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT-------------------------------- 207 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--------------------------------
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--------------------------------
Confidence 9875 44 25556666666333 34 899999999998665
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 340 GCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENG---------NGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQ 410 (481)
Q Consensus 340 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 410 (481)
.|+..+-..++.++.+.|++++|.+.++.+.+.. -+.++.+...+|......|+ +|.+++.++.+.
T Consensus 208 --~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~- 282 (310)
T 3mv2_B 208 --FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL- 282 (310)
T ss_dssp --SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT-
T ss_pred --CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh-
Confidence 2332222333337888899999999998765421 02356677566666666776 888889888874
Q ss_pred CCCCHhH
Q 042941 411 LLPEPKT 417 (481)
Q Consensus 411 ~~p~~~~ 417 (481)
.|+...
T Consensus 283 -~P~hp~ 288 (310)
T 3mv2_B 283 -DHEHAF 288 (310)
T ss_dssp -TCCCHH
T ss_pred -CCCChH
Confidence 455443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.3e-08 Score=76.67 Aligned_cols=130 Identities=13% Similarity=0.144 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042941 174 SFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHAL 253 (481)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 253 (481)
.+..+...+. ..|++++|..+++.+...+.. +...+..+...+...|++++|...++.+.+.+ +.+...+..+...+
T Consensus 3 ~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYY-KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 4556666677 778888888888877665432 55667777777778888888888888777764 44566777777788
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 254 AKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8888888888888887766432 5666777777888888888888888877654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.04 E-value=6.3e-09 Score=90.55 Aligned_cols=189 Identities=8% Similarity=-0.022 Sum_probs=109.3
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CCC-HH
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPS-LVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKF-AVG-IE 139 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~-~~ 139 (481)
.+...+-.....+.+.|++++|...|+.+.+.. |+ +....++..+...+...|++++|+..|+...+... .|. ..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 356667777777778888888888888887752 22 11256777777788888888888888888876532 112 34
Q ss_pred hHHHHHHHHHc--------CCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhH
Q 042941 140 DFQGLLSALCR--------YKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSF 211 (481)
Q Consensus 140 ~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 211 (481)
.+..+..++.. .|++++|+..|+++....|.+......+..... ..+. -...+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~-~~~~------------------~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRE-LRAK------------------LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH-HHHH------------------HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHH-HHHH------------------HHHHH
Confidence 55566666766 777777777777654433333333322111100 0000 00112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcC----------CChHHHHHHHHHHHHc
Q 042941 212 SCIISCYSKARNLHKVLRLFDQMKRMGIEC--DRKVYNAVIHALAKG----------RLVKDAISLMKSMEEK 272 (481)
Q Consensus 212 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~ 272 (481)
..+...|.+.|++++|...|+.+.+..... ....+..+..+|... |++++|...|+++.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 344556666666666666666666542110 223455555555544 6666666666666654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.8e-08 Score=77.25 Aligned_cols=126 Identities=12% Similarity=0.108 Sum_probs=65.9
Q ss_pred HHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCC
Q 042941 144 LLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARN 223 (481)
Q Consensus 144 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~ 223 (481)
+...+...|++++|..++++.....+.+...+..+...+. ..|++++|...++++...+.. +...+..+...+...|+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHH-HhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHhcC
Confidence 3333444444444444443322222233444444555555 555666666666555544322 34455555566666666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 224 LHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 224 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
+++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 85 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 85 YDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 666666666665543 334555556666666666666666666666543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.6e-08 Score=84.54 Aligned_cols=112 Identities=8% Similarity=-0.051 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHH----------------HHHHHHhcCCHHHHHHHHHHH
Q 042941 66 REYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLI----------------LIRRYCAVHDVGRAINAFYAY 129 (481)
Q Consensus 66 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~----------------li~~~~~~~~~~~a~~~~~~~ 129 (481)
..+-.....+.+.|++++|...|+...+. ++.++..+.. +...+...|++++|+..|++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL----NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444455566677777777777776665 3333444444 444444555555555555554
Q ss_pred hhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHH
Q 042941 130 KRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGW 182 (481)
Q Consensus 130 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (481)
.+.. +-+...+..+..++...|++++|...|++.....|.+...+..+...|
T Consensus 81 l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 81 LQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY 132 (208)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4432 123344444444444444444444444443333333444444444443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.98 E-value=5.3e-07 Score=78.43 Aligned_cols=209 Identities=10% Similarity=-0.007 Sum_probs=142.5
Q ss_pred HHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCC
Q 042941 73 AILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYK 152 (481)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 152 (481)
+-..-.|.+..++.-...+. |... .....-+.++++..|+.+.. ....|....+..+... ...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~-----~~~~-~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~ 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFS-----KVTD-NTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSS-----CCCC-HHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT
T ss_pred HHHHHhhHHHHHHHHHHhcC-----ccch-HHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc
Confidence 33445788888887333322 2211 23444466888888877642 1223444344444333 3322
Q ss_pred ChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-cccHHhHHHHHHHHHhcCCHHHHHHHH
Q 042941 153 NVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGI-CYDVVSFSCIISCYSKARNLHKVLRLF 231 (481)
Q Consensus 153 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~ 231 (481)
|+..|+++....+++...+..+...+. ..|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+
T Consensus 85 ----a~~~l~~l~~~~~~~~~~~~~la~i~~-~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 85 ----NIEELENLLKDKQNSPYELYLLATAQA-ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp ----CCHHHHHTTTTSCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----HHHHHHHHHhcCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 677777755443556666678888888 89999999999999877654 225677888899999999999999999
Q ss_pred HHHHHcCCCC-----CHHHHHHHHHHH--H--cCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 042941 232 DQMKRMGIEC-----DRKVYNAVIHAL--A--KGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFD 302 (481)
Q Consensus 232 ~~~~~~~~~~-----~~~~~~~li~~~--~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 302 (481)
+.|.+. .| +..+...+..++ . ..+++..|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++
T Consensus 160 ~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 160 DNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 999886 45 355555566553 2 234899999999999775 3443344455558899999999999999
Q ss_pred HHHH
Q 042941 303 EMLQ 306 (481)
Q Consensus 303 ~m~~ 306 (481)
.+.+
T Consensus 236 ~l~~ 239 (310)
T 3mv2_B 236 LLLS 239 (310)
T ss_dssp HHHS
T ss_pred HHHH
Confidence 7654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.97 E-value=5.8e-08 Score=81.07 Aligned_cols=133 Identities=13% Similarity=0.081 Sum_probs=81.5
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhH
Q 042941 249 VIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEE 328 (481)
Q Consensus 249 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 328 (481)
+..+|.+.|++++|...|++..+..+. +...+..+...|...|++++|...|++..+.. |+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~---------------- 120 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE--AD---------------- 120 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT----------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC----------------
Confidence 778888889999999999888887554 67788888888888999999999998887753 22
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 329 VFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQ--FGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEM 406 (481)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (481)
+...+..+...|...|+ ...+...+..... ..|....+.....++...|++++|+..|++.
T Consensus 121 ---------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~a 183 (208)
T 3urz_A 121 ---------------NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKV 183 (208)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred ---------------CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 23344444444433322 2233333333321 1122223333444555667777777777777
Q ss_pred HHCCCCCCHhHHH
Q 042941 407 KEKQLLPEPKTDE 419 (481)
Q Consensus 407 ~~~~~~p~~~~~~ 419 (481)
.+ +.|+.....
T Consensus 184 l~--l~P~~~~~~ 194 (208)
T 3urz_A 184 IL--RFPSTEAQK 194 (208)
T ss_dssp TT--TSCCHHHHH
T ss_pred HH--hCCCHHHHH
Confidence 65 456654433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-07 Score=82.69 Aligned_cols=187 Identities=10% Similarity=-0.026 Sum_probs=113.5
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC---HHhHHHHHHHHHcCCChhhHHHHHhhccCCCC---CchHh
Q 042941 101 VTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG---IEDFQGLLSALCRYKNVQDAEHLMFCNKDVFP---FNTKS 174 (481)
Q Consensus 101 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ 174 (481)
.++..+..+...+...|++++|+..|+.+.+.... + ...+..+..++.+.|++++|...|++.....| .....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34666666777777777777777777777764321 2 44556666667777777777777766433222 22344
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 042941 175 FNIILNGWCNI--------IGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVY 246 (481)
Q Consensus 175 ~~~l~~~~~~~--------~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 246 (481)
+..+..++. . .|++++|...|+++...... +......+. .+..+... ....+
T Consensus 92 ~~~lg~~~~-~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~--------------~~~~~~~~----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYY-KLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQ--------------KIRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHH-HHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHH--------------HHHHHHHH----HHHHH
T ss_pred HHHHHHHHH-HhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHH--------------HHHHHHHH----HHHHH
Confidence 555555555 5 66666666666666654221 111111110 00000000 01124
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHCC
Q 042941 247 NAVIHALAKGRLVKDAISLMKSMEEKGVAP--NVVTYNSLIKPLCKA----------RKLDEARQAFDEMLQRG 308 (481)
Q Consensus 247 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~~ 308 (481)
..+..+|.+.|++++|...|+.+.+..+.. ....+..+..+|... |++++|...|+.+.+..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 567788999999999999999998864332 234567777778765 88999999999988764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.6e-07 Score=79.62 Aligned_cols=222 Identities=5% Similarity=-0.072 Sum_probs=162.6
Q ss_pred cCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhcCCCCCHHhHHHHHHHH----HcC
Q 042941 78 VRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH--DVGRAINAFYAYKRFKFAVGIEDFQGLLSAL----CRY 151 (481)
Q Consensus 78 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~ 151 (481)
....++|+++++.++.. ++....+|+.--..+...| ++++++..++.+...+.+ +..+|+.--..+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~----nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 46 EEYSERALHITELGINE----LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp TCCSHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHH----CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhc
Confidence 33446888888888876 4444667777777777777 888888888888876533 445555533333 334
Q ss_pred ---CChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCC---
Q 042941 152 ---KNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSR--EAERVWMEMSQRGICYDVVSFSCIISCYSKARN--- 223 (481)
Q Consensus 152 ---~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~--- 223 (481)
+++++++.+++.+....|.+..+|+.-...+. ..+.++ ++++.++.+.+..+. |...|+.-...+.+.+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~-~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVD-TFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCC
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccch
Confidence 67888888888876667778888888777777 778777 888888888887655 77777766666666666
Q ss_pred ---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHH-HHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHH
Q 042941 224 ---LHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKD-AISLMKSMEEKG--VAPNVVTYNSLIKPLCKARKLDEA 297 (481)
Q Consensus 224 ---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a 297 (481)
++++++.++.+.... +-|...|+-+-..+.+.|+... +..+..++.+.+ -..+...+..+...|.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 888899888888875 5688888888888888877443 445666554432 123677888888899999999999
Q ss_pred HHHHHHHHHC
Q 042941 298 RQAFDEMLQR 307 (481)
Q Consensus 298 ~~~~~~m~~~ 307 (481)
.++++.+.+.
T Consensus 278 ~~~~~~l~~~ 287 (306)
T 3dra_A 278 RTVYDLLKSK 287 (306)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999998763
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.8e-08 Score=87.92 Aligned_cols=193 Identities=9% Similarity=-0.019 Sum_probs=110.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhc----CCCCC-HHhHHHHHHHHHcCCChhhHHHHHhhccCCC----CC--chHhHHHHHH
Q 042941 112 RYCAVHDVGRAINAFYAYKRF----KFAVG-IEDFQGLLSALCRYKNVQDAEHLMFCNKDVF----PF--NTKSFNIILN 180 (481)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~--~~~~~~~l~~ 180 (481)
.|...|++++|...|.+..+. +.++. ..+|+.+..+|...|++++|+..+++..... .+ ...+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455667777777777666542 21111 3456667777777777777777665532110 00 1345666667
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhcCCc----cc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHH
Q 042941 181 GWCNII-GSSREAERVWMEMSQRGIC----YD-VVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDR------KVYNA 248 (481)
Q Consensus 181 ~~~~~~-~~~~~a~~~~~~~~~~g~~----~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ 248 (481)
.|. .. |++++|+..|++....... +. ..++..+...+.+.|++++|...|+...+....... ..|..
T Consensus 126 ~~~-~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 126 ILE-NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHH-HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHH-HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 776 64 8888888777776543111 01 345667777777888888888888877765322111 14566
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCC-C---hhhHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 042941 249 VIHALAKGRLVKDAISLMKSMEEKGVAP-N---VVTYNSLIKPLC--KARKLDEARQAFDEML 305 (481)
Q Consensus 249 li~~~~~~g~~~~a~~~~~~~~~~~~~~-~---~~~~~~li~~~~--~~g~~~~a~~~~~~m~ 305 (481)
+..++...|++++|...|++..+..+.. + ...+..++.+|. ..+++++|...|+.+.
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 6667777788888888887776532210 1 112333444443 2355666666665543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1e-08 Score=80.65 Aligned_cols=140 Identities=7% Similarity=-0.056 Sum_probs=69.6
Q ss_pred HHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHH
Q 042941 148 LCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKV 227 (481)
Q Consensus 148 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a 227 (481)
+...|++++|+..+.......|.+...+..+...|. +.|++++|++.|++..+.... +..+|..+..++...|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~-~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYY-EAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHH
Confidence 344455555555555544333333444445555555 556666666655555554322 444555555555556666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHH-HHHHHHcCCCCChhhHHHHHHHHHhc
Q 042941 228 LRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISL-MKSMEEKGVAPNVVTYNSLIKPLCKA 291 (481)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~ 291 (481)
...|+...+.. +-+..++..+...|.+.|++++|... +++..+..+. +...|......+...
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHh
Confidence 66665555543 23445555555555555555444333 3455444322 334444443333333
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.93 E-value=6.3e-08 Score=96.31 Aligned_cols=172 Identities=8% Similarity=-0.040 Sum_probs=138.3
Q ss_pred hcCCHHHHHHHHHHHH--------hcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 042941 185 IIGSSREAERVWMEMS--------QRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKG 256 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (481)
..|++++|++.+++.. ... +.+...+..+..++...|++++|...|++..+.+ +.+...|..+..++...
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 7899999999999987 332 2245677888889999999999999999998874 45778889999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHH
Q 042941 257 RLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESM 336 (481)
Q Consensus 257 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~ 336 (481)
|++++|...|++..+.... +...|..+..+|.+.|++++ ...|++..+.+
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~---------------------------- 530 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN---------------------------- 530 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC----------------------------
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC----------------------------
Confidence 9999999999999887554 67788888999999999999 99998887753
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 042941 337 RKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPD-RSSYTALIHALFLNGK 395 (481)
Q Consensus 337 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 395 (481)
+.+...+..+..++.+.|++++|.+.|++..+.. |+ ...|..+..++...|+
T Consensus 531 -----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 531 -----DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred -----CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC--cccHHHHHHHHHHHHccCC
Confidence 3356678888999999999999999999887753 44 5577777777766555
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=2.1e-08 Score=88.76 Aligned_cols=209 Identities=10% Similarity=0.016 Sum_probs=149.9
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCC-C-cccHHHHHHHHHHHHhcCCHHH
Q 042941 44 DWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGP-S-LVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~-~~~~~~~~~li~~~~~~~~~~~ 121 (481)
++++|...+... ...|...|++++|.+.|++..+..... + .....+|+.+...|...|++++
T Consensus 32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 367777777665 456778999999999998875531000 1 1125688899999999999999
Q ss_pred HHHHHHHHhhcCCC-CC----HHhHHHHHHHHHcC-CChhhHHHHHhhccCCCCCc------hHhHHHHHHHHHHhcCCH
Q 042941 122 AINAFYAYKRFKFA-VG----IEDFQGLLSALCRY-KNVQDAEHLMFCNKDVFPFN------TKSFNIILNGWCNIIGSS 189 (481)
Q Consensus 122 a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~ 189 (481)
|+..|++..+.... .+ ..+++.+..+|... |++++|+..|++.....+.+ ..+++.+...+. ..|++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~ 174 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA-LDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH-HhCCH
Confidence 99999988753211 11 45788899999996 99999999998743221111 356888889999 99999
Q ss_pred HHHHHHHHHHHhcCCcccH------HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH--c
Q 042941 190 REAERVWMEMSQRGICYDV------VSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDR------KVYNAVIHALA--K 255 (481)
Q Consensus 190 ~~a~~~~~~~~~~g~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~--~ 255 (481)
++|+..|++.......... ..|..+..++...|++++|...|++..+. .|+. ..+..++..+. .
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~ 252 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGD 252 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCC
Confidence 9999999999886543222 15677788899999999999999998764 2321 23444566664 4
Q ss_pred CCChHHHHHHHHHHHH
Q 042941 256 GRLVKDAISLMKSMEE 271 (481)
Q Consensus 256 ~g~~~~a~~~~~~~~~ 271 (481)
.+++++|+..|+.+..
T Consensus 253 ~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 253 SEQLSEHCKEFDNFMR 268 (292)
T ss_dssp TTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhccCCc
Confidence 5678888888877654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-08 Score=82.85 Aligned_cols=160 Identities=9% Similarity=-0.023 Sum_probs=80.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcC
Q 042941 108 ILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIG 187 (481)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 187 (481)
.....+...|++++|+..|+...+.. +.+...+..+..++...|++++|+..+++.....| +...+...........+
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhc
Confidence 33444455555555555555544432 12344455555555555555555555555433222 33222221111110111
Q ss_pred CHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChHHHHHHH
Q 042941 188 SSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIEC-DRKVYNAVIHALAKGRLVKDAISLM 266 (481)
Q Consensus 188 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~ 266 (481)
....|...++........ +...+..+..++...|++++|...|+.+.+....+ +...+..+..++...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 222355566665554222 45566666666677777777777777666653211 2445666666677777777777666
Q ss_pred HHHH
Q 042941 267 KSME 270 (481)
Q Consensus 267 ~~~~ 270 (481)
++..
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.89 E-value=5.3e-08 Score=78.90 Aligned_cols=158 Identities=8% Similarity=-0.030 Sum_probs=75.9
Q ss_pred HHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHH-HHhc
Q 042941 143 GLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISC-YSKA 221 (481)
Q Consensus 143 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~-~~~~ 221 (481)
.+...+...|++++|...|++.....|.+...+..+...+. ..|++++|...++...... |+...+...... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLL-ETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHH-HTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 34445555555556655555544434444555555555555 5556666655555544332 122222111111 1111
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHH
Q 042941 222 RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAP-NVVTYNSLIKPLCKARKLDEARQA 300 (481)
Q Consensus 222 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~ 300 (481)
+...++...++...+.. +.+...+..+..++...|++++|...|+++.+..+.+ +...+..+...+...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 11223455555555442 2244555555555555566666666655555543322 233455555555555555555555
Q ss_pred HHHH
Q 042941 301 FDEM 304 (481)
Q Consensus 301 ~~~m 304 (481)
|++.
T Consensus 167 y~~a 170 (176)
T 2r5s_A 167 YRRQ 170 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-08 Score=101.63 Aligned_cols=171 Identities=8% Similarity=-0.041 Sum_probs=96.5
Q ss_pred HhcCCHHHHHHHHHHHh--------hcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHh
Q 042941 114 CAVHDVGRAINAFYAYK--------RFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNI 185 (481)
Q Consensus 114 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 185 (481)
...|++++|+..+++.. +.. +.+...+..+..++...|++++|+..|++.....+.+...+..+...+. .
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAEL-L 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-H
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHH-H
Confidence 44566666666666655 322 2234455555566666666666666665544434445556666666666 6
Q ss_pred cCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 042941 186 IGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISL 265 (481)
Q Consensus 186 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 265 (481)
.|++++|+..|++..+.... +...+..+..++.+.|++++ .+.|++..+.+ +.+...|..+..++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666555322 34455556666666666666 66666666553 33555666666666666666666666
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHh
Q 042941 266 MKSMEEKGVAPNVVTYNSLIKPLCK 290 (481)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~li~~~~~ 290 (481)
|++..+.+.. +...+..+..++..
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLS 580 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC-
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHc
Confidence 6666554222 23444445555444
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.8e-07 Score=82.47 Aligned_cols=164 Identities=10% Similarity=-0.054 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHH-HHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNI-ILNG 181 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-l~~~ 181 (481)
...+..+...+...|++++|+..|++..+.. +-+...+..+..++...|++++|...++++....| +...... ....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p-~~~~~~~~~~~~ 194 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ-DTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC-SHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc-chHHHHHHHHHH
Confidence 5566667777777777777777777777654 23556667777777777777777777776544333 3322222 2222
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCChH
Q 042941 182 WCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIE-CDRKVYNAVIHALAKGRLVK 260 (481)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~ 260 (481)
+. ..++.+.|...+++....... +...+..+...+...|++++|...|..+.+.... .+...+..+...+...|+.+
T Consensus 195 l~-~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 195 LL-XQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HH-HHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HH-hhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 34 555666666666666655332 4556666666777777777777777776665311 11455666666666667666
Q ss_pred HHHHHHHHHH
Q 042941 261 DAISLMKSME 270 (481)
Q Consensus 261 ~a~~~~~~~~ 270 (481)
+|...|++..
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 6666665543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.88 E-value=4.6e-06 Score=79.18 Aligned_cols=100 Identities=11% Similarity=0.023 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHhh-cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCC-hhHHHHHHHHHhcCCCCCCcccHHHH
Q 042941 29 VSSELVSEVLSWVR-NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRK-FDTAWALIDEMRGGETGPSLVTKQTL 106 (481)
Q Consensus 29 ~~~~~~~~~l~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~~ 106 (481)
-...++...+..+. +..+.+..+|+...... |++..|...+....+.+. .+....+|+..... +.+++.+...|
T Consensus 13 ~aR~vyer~l~~~P~~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~-vg~d~~s~~iW 88 (493)
T 2uy1_A 13 SPSAIMEHARRLYMSKDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQ-FENYWDSYGLY 88 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHC----CTHHHHHHHHHH-STTCTTCHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH-cCCCcccHHHH
Confidence 34455666666664 78899999999997543 799999999999888774 35677788876653 23344457888
Q ss_pred HHHHHHHH----hcCCHHHHHHHHHHHhhc
Q 042941 107 LILIRRYC----AVHDVGRAINAFYAYKRF 132 (481)
Q Consensus 107 ~~li~~~~----~~~~~~~a~~~~~~~~~~ 132 (481)
...+..+. .+++.+.+..+|++.+..
T Consensus 89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 88877654 346788999999999873
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.86 E-value=3.1e-07 Score=77.66 Aligned_cols=189 Identities=12% Similarity=-0.006 Sum_probs=114.2
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CCH-Hh
Q 042941 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPS-LVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFA-VGI-ED 140 (481)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~-~~ 140 (481)
+...+..+...+.+.|++++|...|+.+.+. .|+ +....++..+..++...|++++|+..|+++.+.... +.. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 3445556666677778888888888777764 122 122456667777777778888888888777764322 111 12
Q ss_pred HHHHHHHHH------------------cCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 042941 141 FQGLLSALC------------------RYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR 202 (481)
Q Consensus 141 ~~~ll~~~~------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 202 (481)
+..+..++. ..|++++|...|+++....|.+...+........ . ...+.
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~-~----------~~~~~-- 147 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF-L----------KDRLA-- 147 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH-H----------HHHHH--
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH-H----------HHHHH--
Confidence 333333333 2456666666666655544444333322211110 0 00000
Q ss_pred CCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC
Q 042941 203 GICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECD---RKVYNAVIHALAKGRLVKDAISLMKSMEEKGV 274 (481)
Q Consensus 203 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 274 (481)
.....+...+.+.|++++|...|+.+.+.. +.+ ...+..+..++.+.|++++|.+.++.+...++
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 011245677888999999999999988763 222 24677788899999999999999998887644
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.86 E-value=2.8e-07 Score=77.99 Aligned_cols=186 Identities=8% Similarity=-0.075 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC-HHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchH---hHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFA-VG-IEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTK---SFNI 177 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 177 (481)
+..+..+...+...|++++|+..|+.+.+.... |. ...+..+..++.+.|++++|+..|+++....|.+.. .+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 566777788889999999999999999875422 21 356777889999999999999999886544333332 3444
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 042941 178 ILNGWCNI------------------IGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGI 239 (481)
Q Consensus 178 l~~~~~~~------------------~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 239 (481)
+..++. . .|++++|...|+.+.+..+. +...+...... ..+...+
T Consensus 84 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNM-ALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL----- 146 (225)
T ss_dssp HHHHHH-HHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHH-hhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH-----
Confidence 444444 3 34556666666665554211 11111111000 0000000
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 240 ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPN--VVTYNSLIKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 240 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
......+...|.+.|++++|...|+++.+..+... ...+..+..+|.+.|++++|...++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01113466788999999999999999988743311 2467888999999999999999999998875
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.2e-08 Score=80.25 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=7.1
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 042941 111 RRYCAVHDVGRAINAFYAY 129 (481)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~ 129 (481)
..|...|++++|+..|++.
T Consensus 39 ~~y~~~~~~~~A~~~~~~a 57 (150)
T 4ga2_A 39 KLYYEAKEYDLAKKYICTY 57 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 3333333333333333333
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=9.9e-08 Score=93.13 Aligned_cols=152 Identities=10% Similarity=-0.073 Sum_probs=69.8
Q ss_pred CChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHH
Q 042941 79 RKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAE 158 (481)
Q Consensus 79 g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 158 (481)
|++++|.+.|++..+. ++.+...+..+...+...|++++|+..|++..+.. +.+...+..+..+|...|++++|.
T Consensus 3 g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRH----RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 5556666666665554 33335556666666666666666666666665543 223445555555555555555555
Q ss_pred HHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 042941 159 HLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKA---RNLHKVLRLFDQMK 235 (481)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~ 235 (481)
..+++.....+.+...+..+...+. ..|++++|.+.|++..+.... +...+..+..++... |++++|.+.+++..
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALE-DAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 5555533333334445555555555 555555555555555444221 334444455555555 55555555555555
Q ss_pred Hc
Q 042941 236 RM 237 (481)
Q Consensus 236 ~~ 237 (481)
+.
T Consensus 156 ~~ 157 (568)
T 2vsy_A 156 AQ 157 (568)
T ss_dssp HH
T ss_pred hc
Confidence 44
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-07 Score=91.88 Aligned_cols=155 Identities=10% Similarity=0.000 Sum_probs=100.2
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHH
Q 042941 116 VHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERV 195 (481)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~ 195 (481)
.|++++|+..|++..+.. +.+...+..+...+...|++++|...+++.....+.+...+..+...+. ..|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRW-TQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHH
Confidence 467778888887776643 2346677777778888888888888887766555666777777777777 78888888888
Q ss_pred HHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---CChHHHHHHHHHHHHc
Q 042941 196 WMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKG---RLVKDAISLMKSMEEK 272 (481)
Q Consensus 196 ~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~ 272 (481)
+++..+.... +...+..+..++.+.|++++|.+.+++..+.. +.+...+..+..++... |++++|...+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 8877766432 45677777777888888888888888777764 34566777777777777 7888888888877776
Q ss_pred CC
Q 042941 273 GV 274 (481)
Q Consensus 273 ~~ 274 (481)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 44
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=9.4e-08 Score=84.23 Aligned_cols=167 Identities=13% Similarity=-0.005 Sum_probs=133.3
Q ss_pred CCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHH-
Q 042941 135 AVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSC- 213 (481)
Q Consensus 135 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~- 213 (481)
+.+...+..+...+...|++++|...|++.....|.+...+..+...+. ..|++++|...++..... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLI-ALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH-HTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHH-HCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3345667778888999999999999999876666778888999999999 999999999999988766 344433222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcC
Q 042941 214 IISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAP-NVVTYNSLIKPLCKAR 292 (481)
Q Consensus 214 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 292 (481)
....+...++.++|...+++..... +.+...+..+...+...|++++|...|.++.+..+.. +...+..+...+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2334667777888899998888875 5678888999999999999999999999998875432 2667889999999999
Q ss_pred CHHHHHHHHHHHH
Q 042941 293 KLDEARQAFDEML 305 (481)
Q Consensus 293 ~~~~a~~~~~~m~ 305 (481)
+.++|...|++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9999998888754
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-06 Score=73.56 Aligned_cols=174 Identities=10% Similarity=-0.053 Sum_probs=96.8
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcC----CHHHHH
Q 042941 48 AFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH----DVGRAI 123 (481)
Q Consensus 48 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~----~~~~a~ 123 (481)
|++.|+..... -++.++..+...+...+++++|...|+...+.| + +.++..+...|.. + ++++|+
T Consensus 5 A~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~---~~a~~~lg~~y~~-~g~~~~~~~A~ 73 (212)
T 3rjv_A 5 PGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---D---GDALALLAQLKIR-NPQQADYPQAR 73 (212)
T ss_dssp TTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---C---HHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---C---HHHHHHHHHHHHc-CCCCCCHHHHH
Confidence 45555555432 256666666666666777777777777766553 2 5555666666655 4 677777
Q ss_pred HHHHHHhhcCCCCCHHhHHHHHHHHHc----CCChhhHHHHHhhccCCCCC--chHhHHHHHHHHHHh----cCCHHHHH
Q 042941 124 NAFYAYKRFKFAVGIEDFQGLLSALCR----YKNVQDAEHLMFCNKDVFPF--NTKSFNIILNGWCNI----IGSSREAE 193 (481)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----~~~~~~a~ 193 (481)
..|++..+.+ ++..+..|...|.. .+++++|..+|++.....+. ....+..+...|. . .+++++|.
T Consensus 74 ~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~-~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 74 QLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYA-SGVHGPEDDVKAS 149 (212)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHH-HTSSSSCCHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 7777665543 44555556666655 55666666666654332221 1455555555555 4 45566666
Q ss_pred HHHHHHHhcCCcccHHhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 042941 194 RVWMEMSQRGICYDVVSFSCIISCYSKA-R-----NLHKVLRLFDQMKRMG 238 (481)
Q Consensus 194 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~ 238 (481)
..|++..+.+ .+...+..|...|... | ++++|...|+...+.|
T Consensus 150 ~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 150 EYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6666655541 1222344444444332 2 5566666666555554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.9e-06 Score=73.10 Aligned_cols=216 Identities=9% Similarity=0.044 Sum_probs=113.9
Q ss_pred hHHHHHhhccCCCCCchHhHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCcccHHhHHHHHHHH----Hhc---CCHHH
Q 042941 156 DAEHLMFCNKDVFPFNTKSFNIILNGWCNIIG--SSREAERVWMEMSQRGICYDVVSFSCIISCY----SKA---RNLHK 226 (481)
Q Consensus 156 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~----~~~---~~~~~ 226 (481)
+|+.+++.+....|.+...|+.--..+. ..+ ++++++..++.+...+++ +..+|+.-...+ ... +++++
T Consensus 51 ~aL~~t~~~L~~nP~~~taWn~R~~~L~-~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 51 RALHITELGINELASHYTIWIYRFNILK-NLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHCcHHHHHHHHHHHHHH-HcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 3444444433333334444444444444 444 555555555555554333 222333222222 222 45666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChH--HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC------HHHHH
Q 042941 227 VLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVK--DAISLMKSMEEKGVAPNVVTYNSLIKPLCKARK------LDEAR 298 (481)
Q Consensus 227 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~~a~ 298 (481)
++++++.+.+.. +-+..+|+.-.-++.+.|.++ ++++.++++.+..+. |...|+.-...+...++ +++++
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 666666666653 445566665555555566655 666666666665544 55555554444444443 45555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHCC--
Q 042941 299 QAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQF-GNVFKVWNEISENG-- 375 (481)
Q Consensus 299 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~-- 375 (481)
+.+++++... +-|...|+-+-..+.+.|+. +.+..+..++.+.+
T Consensus 207 ~~~~~aI~~~---------------------------------p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 253 (306)
T 3dra_A 207 NYVKDKIVKC---------------------------------PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKD 253 (306)
T ss_dssp HHHHHHHHHC---------------------------------SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGT
T ss_pred HHHHHHHHhC---------------------------------CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCC
Confidence 5555554432 23444555555555555553 33444555544322
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 376 NGPDRSSYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
-..+...+..+...|.+.|+.++|.++|+.+.+
T Consensus 254 ~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 254 QVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp EESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 123666777777777778888888888888765
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.76 E-value=7.1e-07 Score=74.64 Aligned_cols=176 Identities=9% Similarity=-0.027 Sum_probs=106.4
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCC----ChhhHH
Q 042941 83 TAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYK----NVQDAE 158 (481)
Q Consensus 83 ~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~ 158 (481)
+|...|+...+.| + +.++..+...+...+++++|+..|++..+.| ++..+..|...|.. + ++++|.
T Consensus 4 eA~~~~~~aa~~g---~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~ 73 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---D---RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQAR 73 (212)
T ss_dssp CTTHHHHHHHHTT---C---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred hHHHHHHHHHHCC---C---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHH
Confidence 4566666666553 4 6677777777777888888888888877654 45566666666666 5 677777
Q ss_pred HHHhhccCCCCCchHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCc-ccHHhHHHHHHHHHh----cCCHHHHHH
Q 042941 159 HLMFCNKDVFPFNTKSFNIILNGWCNI----IGSSREAERVWMEMSQRGIC-YDVVSFSCIISCYSK----ARNLHKVLR 229 (481)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~a~~~~~~~~~~g~~-~~~~~~~~ll~~~~~----~~~~~~a~~ 229 (481)
.+|++... +.+...+..+...|. . .+++++|...|++..+.|.. .+...+..|...|.. .+++++|..
T Consensus 74 ~~~~~A~~--~g~~~a~~~Lg~~y~-~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 74 QLAEKAVE--AGSKSGEIVLARVLV-NRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHHHT-CGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHHH--CCCHHHHHHHHHHHH-cCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 77766422 124455555555555 4 56677777777666665432 014455556666665 556666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcC-C-----ChHHHHHHHHHHHHcC
Q 042941 230 LFDQMKRMGIECDRKVYNAVIHALAKG-R-----LVKDAISLMKSMEEKG 273 (481)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~ 273 (481)
.|+...+. ..+...+..+..+|... | ++++|...|+...+.|
T Consensus 151 ~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 151 YFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66666654 12333455555555432 2 5666666666665554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=7.6e-06 Score=72.70 Aligned_cols=231 Identities=10% Similarity=0.030 Sum_probs=162.6
Q ss_pred HHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 042941 69 HTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH-DVGRAINAFYAYKRFKFAVGIEDFQGLLSA 147 (481)
Q Consensus 69 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 147 (481)
+.+-....+.+..++|+++++.+... ++....+|+.--..+...| .+++++..++.+...+. -+..+|+.-..+
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~----nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wl 132 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRM----NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHh----CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence 33333344555667899999998886 4445777877777777777 58999999999987663 366777776655
Q ss_pred HHcC-C-ChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCCcccHHhHHHHHHH
Q 042941 148 LCRY-K-NVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSR--------EAERVWMEMSQRGICYDVVSFSCIISC 217 (481)
Q Consensus 148 ~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~a~~~~~~~~~~g~~~~~~~~~~ll~~ 217 (481)
+... + ++++++.+++.+....+.+...|+.-...+. +.+.++ ++++.++++.+..+. |...|+.....
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~-~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~l 210 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYS-HFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYL 210 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHH-HHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 5555 5 7888888888877777778888877665555 555555 888888888887554 77788877777
Q ss_pred HHhcCC-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh--------------------HHHHHHHHHHH
Q 042941 218 YSKARN-------LHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLV--------------------KDAISLMKSME 270 (481)
Q Consensus 218 ~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~ 270 (481)
+.+.+. ++++++.++...... +-|...|+-+-..+.+.|.. ........++.
T Consensus 211 L~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (349)
T 3q7a_A 211 RVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMP 289 (349)
T ss_dssp HTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCC
T ss_pred HHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHH
Confidence 777775 688888888888775 55788887777667666653 22222222222
Q ss_pred HcC-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 271 EKG-----VAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 271 ~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
..+ -.++...+..++..|...|+.++|.++++.+.+.
T Consensus 290 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 290 SDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp C-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 221 1347777888899999999999999999998754
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.9e-06 Score=76.20 Aligned_cols=135 Identities=8% Similarity=0.020 Sum_probs=69.5
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHH---HHHHHHHHHhccCChhHHHHHHHHHhcCC
Q 042941 19 RNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTR---EYHTMIAILGKVRKFDTAWALIDEMRGGE 95 (481)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 95 (481)
...+......|+..++..+...+.-+.+. ++.. .. ..+.. .+...+..+...|++++|..++++..+..
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~~~---~~~~----~~-~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~ 105 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPIIH---FYEV----LI-YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE 105 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCTHH---HHHT----TT-SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCHHH---HhCC----CC-CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc
Confidence 34444444567777777777777544432 1211 11 12222 23334566777888888888888877642
Q ss_pred CCCCcccHH----HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC----HHhHHHHHHHHHcCCChhhHHHHHhh
Q 042941 96 TGPSLVTKQ----TLLILIRRYCAVHDVGRAINAFYAYKRFKFA-VG----IEDFQGLLSALCRYKNVQDAEHLMFC 163 (481)
Q Consensus 96 ~~p~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~ 163 (481)
+...... .+..+...+...|++++|+..++.+...... ++ ..+++.+..+|...|++++|...|++
T Consensus 106 --~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 180 (293)
T 3u3w_A 106 --EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQ 180 (293)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1111111 2223445555566777777777776653221 11 11344455555555555555554443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.72 E-value=9.8e-07 Score=78.58 Aligned_cols=197 Identities=9% Similarity=-0.070 Sum_probs=126.1
Q ss_pred cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHH
Q 042941 43 NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRA 122 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a 122 (481)
++.++|.++++...+... .+ .+...++++.|...|... ...|...|++++|
T Consensus 5 ~~~~eA~~~~~~a~k~~~--~~---------~~~~~~~~~~A~~~~~~a------------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLK--TS---------FMKWKPDYDSAASEYAKA------------------AVAFKNAKQLEQA 55 (307)
T ss_dssp HHHHHHHHHHHHHHHHHC--CC---------SSSCSCCHHHHHHHHHHH------------------HHHHHHTTCHHHH
T ss_pred chHHHHHHHHHHHHHHcc--cc---------ccCCCCCHHHHHHHHHHH------------------HHHHHHcCCHHHH
Confidence 455677777776643221 00 011135666666666543 4456678888888
Q ss_pred HHHHHHHhhcCC----CC-CHHhHHHHHHHHHcCCChhhHHHHHhhccC----CCCC--chHhHHHHHHHHHHhcCCHHH
Q 042941 123 INAFYAYKRFKF----AV-GIEDFQGLLSALCRYKNVQDAEHLMFCNKD----VFPF--NTKSFNIILNGWCNIIGSSRE 191 (481)
Q Consensus 123 ~~~~~~~~~~~~----~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~~ 191 (481)
...|.+..+... .+ -..+|+.+..+|...|++++|+..|++... ...+ ...+++.+...|. . |++++
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~-g~~~~ 133 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME-P-LDLSK 133 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT-T-TCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-c-CCHHH
Confidence 888887764321 11 134677788888888999988888876321 1111 2346667777777 6 88888
Q ss_pred HHHHHHHHHhcCCc----c-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHcCCChHH
Q 042941 192 AERVWMEMSQRGIC----Y-DVVSFSCIISCYSKARNLHKVLRLFDQMKRM----GIECD-RKVYNAVIHALAKGRLVKD 261 (481)
Q Consensus 192 a~~~~~~~~~~g~~----~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~ 261 (481)
|+..|++....... + ...++..+...+.+.|++++|+..|++.... +..+. ...+..+..++...|++++
T Consensus 134 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 213 (307)
T 2ifu_A 134 AVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA 213 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 88888876553111 1 1356777788888888888888888887653 11111 2255666677777788888
Q ss_pred HHHHHHHHH
Q 042941 262 AISLMKSME 270 (481)
Q Consensus 262 a~~~~~~~~ 270 (481)
|...|++..
T Consensus 214 A~~~~~~al 222 (307)
T 2ifu_A 214 AQKCVRESY 222 (307)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 888888877
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.9e-06 Score=74.96 Aligned_cols=96 Identities=11% Similarity=-0.021 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHh---c-CCcc--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-C
Q 042941 174 SFNIILNGWCNIIGSSREAERVWMEMSQ---R-GICY--DVVSFSCIISCYSKARNLHKVLRLFDQMKRMG----IEC-D 242 (481)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~---~-g~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~ 242 (481)
+++.+...|. ..|++++|...|++..+ . +..+ ...++..+...|...|++++|...+++..+.. ... -
T Consensus 157 ~~~~lg~~y~-~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 157 IENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4555555555 56666666666665542 1 1111 11355666666666666666666666654321 111 1
Q ss_pred HHHHHHHHHHHHcCCChHHH-HHHHHHHH
Q 042941 243 RKVYNAVIHALAKGRLVKDA-ISLMKSME 270 (481)
Q Consensus 243 ~~~~~~li~~~~~~g~~~~a-~~~~~~~~ 270 (481)
..+|..+..+|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 44566666666677777666 55555544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.1e-06 Score=71.77 Aligned_cols=123 Identities=9% Similarity=-0.105 Sum_probs=61.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 042941 179 LNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRL 258 (481)
Q Consensus 179 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 258 (481)
...+. ..|++++|...|++.. .|+...+..+..++...|++++|...|+...+.. +.+...+..+..+|...|+
T Consensus 13 g~~~~-~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 13 GVLAA-DKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHH-HTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHH-HhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 33444 4555555555554432 2344455555555555555555555555555442 3344455555555555555
Q ss_pred hHHHHHHHHHHHHcCCCC---------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 259 VKDAISLMKSMEEKGVAP---------------NVVTYNSLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
+++|...|++..+..... ....+..+..+|...|++++|...|+...+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 555555555555432110 1134455555555566666666666655554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1e-05 Score=71.46 Aligned_cols=161 Identities=14% Similarity=0.022 Sum_probs=98.7
Q ss_pred HHHHHcCCChhhHHHHHhhccCCCC--Cch----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc-cc----HHhHHH
Q 042941 145 LSALCRYKNVQDAEHLMFCNKDVFP--FNT----KSFNIILNGWCNIIGSSREAERVWMEMSQRGIC-YD----VVSFSC 213 (481)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~ 213 (481)
+..+...|++++|..+++......+ |+. ..+..+...+. ..+++++|...++........ ++ ..+++.
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL-KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4455556666666666655332211 111 12223444455 667778888877777663222 12 235777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCCC-hhhHH
Q 042941 214 IISCYSKARNLHKVLRLFDQMKRM-----GIECD-RKVYNAVIHALAKGRLVKDAISLMKSMEEK----GVAPN-VVTYN 282 (481)
Q Consensus 214 ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~ 282 (481)
+..+|...|++++|...|+.+.+. +..+. ..++..+...|.+.|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 777888888888888888777631 11111 236677788888888888888888776543 11111 45677
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHH
Q 042941 283 SLIKPLCKARK-LDEARQAFDEMLQ 306 (481)
Q Consensus 283 ~li~~~~~~g~-~~~a~~~~~~m~~ 306 (481)
.+..+|...|+ +++|...+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 77778888884 5888888877643
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.2e-06 Score=71.57 Aligned_cols=127 Identities=9% Similarity=-0.059 Sum_probs=79.1
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 042941 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSA 147 (481)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 147 (481)
+..+...+...|++++|...|++.. .|+ ..++..+...+...|++++|+..|+...+.. +.+...+..+..+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPH---SRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 4445555666677777777776653 233 5666666777777777777777777666543 2345566666666
Q ss_pred HHcCCChhhHHHHHhhccCCCCCch----------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 042941 148 LCRYKNVQDAEHLMFCNKDVFPFNT----------------KSFNIILNGWCNIIGSSREAERVWMEMSQRG 203 (481)
Q Consensus 148 ~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g 203 (481)
+...|++++|...|++.....+.+. ..+..+...+. ..|++++|...|+......
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA-KKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHH-HccCHHHHHHHHHHHHHcC
Confidence 6667777777666665433222222 55666666666 6777777777777766653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.60 E-value=7e-07 Score=79.54 Aligned_cols=191 Identities=6% Similarity=-0.070 Sum_probs=130.8
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhcCCC--CCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC---CC--CHHh
Q 042941 68 YHTMIAILGKVRKFDTAWALIDEMRGGET--GPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKF---AV--GIED 140 (481)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~ 140 (481)
|+.....|...|++++|.+.|.+..+... ........+|..+...|...|++++|+..|++..+... .+ ...+
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 118 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA 118 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33345677888999999999988755310 00111245788888999999999999999998764311 11 2356
Q ss_pred HHHHHHHHHcCCChhhHHHHHhhccCCCC------CchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCccc-HH
Q 042941 141 FQGLLSALCRYKNVQDAEHLMFCNKDVFP------FNTKSFNIILNGWCNIIGSSREAERVWMEMSQR----GICYD-VV 209 (481)
Q Consensus 141 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~----g~~~~-~~ 209 (481)
+..+..+|.. |++++|+..|++.....+ ....+++.+...+. ..|++++|+..|++.... +..+. ..
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV-RQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 7788888988 999999999987432111 12457888888999 999999999999988763 22222 22
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHcCCChHHHHH
Q 042941 210 SFSCIISCYSKARNLHKVLRLFDQMKRMGIECDR------KVYNAVIHALAKGRLVKDAIS 264 (481)
Q Consensus 210 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~ 264 (481)
.+..+..++...|++++|...|++.. . .|+. .....++..+ ..|+.+.+..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 56667777888899999999999988 4 2321 1233444444 4566555444
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.60 E-value=3.1e-06 Score=67.32 Aligned_cols=129 Identities=7% Similarity=-0.011 Sum_probs=90.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042941 173 KSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHA 252 (481)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 252 (481)
..+..+...+. ..|++++|...|+........ +..++..+..++...|++++|...++...+.. +.+...+..+..+
T Consensus 14 ~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYF-KAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 44556666677 778888888888877765332 56677777778888888888888888877764 4466777778888
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCChhhHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 042941 253 LAKGRLVKDAISLMKSMEEKGVAPNVVTYNS--LIKPLCKARKLDEARQAFDEML 305 (481)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m~ 305 (481)
+...|++++|...|++..+.... +...+.. ....+...|++++|...+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888888888888776433 3444433 3333666788888888777653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-06 Score=74.86 Aligned_cols=187 Identities=6% Similarity=-0.123 Sum_probs=92.8
Q ss_pred ccCChhHHHHHHHHHhcCCCCCCcccHHHHHHH-------HHHHHhcCCHHHHHHHHHHHhhcCCCCC------------
Q 042941 77 KVRKFDTAWALIDEMRGGETGPSLVTKQTLLIL-------IRRYCAVHDVGRAINAFYAYKRFKFAVG------------ 137 (481)
Q Consensus 77 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~~~~~~~~~~------------ 137 (481)
..++...|.+.|.+..+. ++.....|..+ ...+...++..+++..+....+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~----dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y 91 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY----DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLY 91 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTT
T ss_pred cCCCHHHHHHHHHHHHHh----ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcc
Confidence 467777888888887776 44446677666 3344444444444444443332 1111
Q ss_pred ----------HHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc
Q 042941 138 ----------IEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYD 207 (481)
Q Consensus 138 ----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 207 (481)
......+..++...|++++|.++|..+....|-+. ....+...+. +.+++++|+..|+...... .|.
T Consensus 92 ~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~-~~~r~~dA~~~l~~a~~~~-d~~ 168 (282)
T 4f3v_A 92 GDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYG-AAERWTDVIDQVKSAGKWP-DKF 168 (282)
T ss_dssp CCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHH-HTTCHHHHHHHHTTGGGCS-CHH
T ss_pred cccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHH-HcCCHHHHHHHHHHhhccC-Ccc
Confidence 11122344555556666666666655544333222 3333333444 5666666666665332221 110
Q ss_pred --HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 208 --VVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECD--RKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 208 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 12344455556666666666666665553221132 223344445555566666666666665554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.8e-06 Score=67.36 Aligned_cols=101 Identities=10% Similarity=0.022 Sum_probs=68.4
Q ss_pred CCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 042941 169 PFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNA 248 (481)
Q Consensus 169 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 248 (481)
|.+...+..+...+. +.|++++|...|+......+. +...|..+..+|...|++++|...|+...+.. +.+...|..
T Consensus 33 p~~~~~~~~lg~~~~-~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~ 109 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFY-NKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFH 109 (151)
T ss_dssp HHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHH
T ss_pred HHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHH
Confidence 344555666666666 677777777777777665433 55666677777777777777777777777654 345566667
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHc
Q 042941 249 VIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 249 li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
+..+|...|++++|...|++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777777665
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.9e-06 Score=65.07 Aligned_cols=92 Identities=18% Similarity=0.113 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 042941 177 IILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKG 256 (481)
Q Consensus 177 ~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (481)
.....+. +.|++++|+..|++..+.... +...|..+..++.+.|++++|+..++...+.+ +.+...|..+..++...
T Consensus 18 ~~G~~~~-~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 18 NKGNEYF-KKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHC
Confidence 3333444 444444444444444333211 33344444444444444444444444444432 22333444444444444
Q ss_pred CChHHHHHHHHHHHH
Q 042941 257 RLVKDAISLMKSMEE 271 (481)
Q Consensus 257 g~~~~a~~~~~~~~~ 271 (481)
|++++|...|++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-05 Score=71.31 Aligned_cols=127 Identities=13% Similarity=0.010 Sum_probs=88.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC---ccc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHH---c-CCCC--CHHHH
Q 042941 178 ILNGWCNIIGSSREAERVWMEMSQRGI---CYD--VVSFSCIISCYSKARNLHKVLRLFDQMKR---M-GIEC--DRKVY 246 (481)
Q Consensus 178 l~~~~~~~~~~~~~a~~~~~~~~~~g~---~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~ 246 (481)
+...+. ..|++++|...+++...... .+. ..+++.+...|...|++++|...|++..+ . +..+ ...++
T Consensus 121 ~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~ 199 (293)
T 2qfc_A 121 VAAYVL-KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HHHHHH-TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHh-cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHH
Confidence 444455 67788888888877664321 111 44788888889999999999999988763 2 1111 12578
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcC----CCC-ChhhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 042941 247 NAVIHALAKGRLVKDAISLMKSMEEKG----VAP-NVVTYNSLIKPLCKARKLDEA-RQAFDEML 305 (481)
Q Consensus 247 ~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 305 (481)
..+..+|...|++++|...+++..+.. ... -..+|..+...|...|++++| ...+++..
T Consensus 200 ~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 888888999999999999998876431 111 155677888888899999988 77677654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.55 E-value=3.2e-07 Score=82.76 Aligned_cols=152 Identities=10% Similarity=-0.010 Sum_probs=115.4
Q ss_pred CChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc--------------HHhHHHHHHH
Q 042941 152 KNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYD--------------VVSFSCIISC 217 (481)
Q Consensus 152 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~--------------~~~~~~ll~~ 217 (481)
+++++|...++......+.+...+..+...+. +.|++++|...|++......... ...|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~-~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYF-KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34445554444322212235567778888888 89999999999998887643322 4788888899
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 042941 218 YSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEA 297 (481)
Q Consensus 218 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 297 (481)
+.+.|++++|+..++...+.. +.+...+..+..+|...|++++|...|++..+..+. +...+..+..++...|++++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998875 557888889999999999999999999999887544 667788888888888888888
Q ss_pred -HHHHHHHHH
Q 042941 298 -RQAFDEMLQ 306 (481)
Q Consensus 298 -~~~~~~m~~ 306 (481)
...|+.|..
T Consensus 284 ~~~~~~~~~~ 293 (336)
T 1p5q_A 284 EKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 446666543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.5e-06 Score=69.24 Aligned_cols=127 Identities=12% Similarity=-0.036 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHH
Q 042941 105 TLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCN 184 (481)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 184 (481)
.+..+...+...|++++|...|+...+.. +.+..++..+..++...|++++|...+++.....+.+...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~- 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM- 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-
Confidence 33344444444444444444444444332 1233444444444444555555555444433323334444555555555
Q ss_pred hcCCHHHHHHHHHHHHhcCCcccHHhH--HHHHHHHHhcCCHHHHHHHHHHH
Q 042941 185 IIGSSREAERVWMEMSQRGICYDVVSF--SCIISCYSKARNLHKVLRLFDQM 234 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~ 234 (481)
..|++++|...|++....... +...+ ......+...|++++|...+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 555555555555555444221 22222 22222244455555555555544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.55 E-value=9.1e-07 Score=66.90 Aligned_cols=97 Identities=11% Similarity=-0.046 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHH
Q 042941 104 QTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWC 183 (481)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 183 (481)
..+......+.+.|++++|+..|++..+.+ +.++..|..+..++.+.|++++|+..|++.....|.+...|..+..++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 334444444444444444444444444332 1233444444444444444444444444433223334444444444444
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 042941 184 NIIGSSREAERVWMEMSQR 202 (481)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~ 202 (481)
..|++++|...|+...+.
T Consensus 93 -~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 -AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp -HTTCHHHHHHHHHHHHHH
T ss_pred -HCCCHHHHHHHHHHHHHH
Confidence 455555555555544443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.54 E-value=4.9e-06 Score=62.33 Aligned_cols=96 Identities=11% Similarity=0.136 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042941 174 SFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHAL 253 (481)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 253 (481)
.+..+...+. ..|++++|...++++..... .+..++..+...+...|++++|...++.+.+.. +.+..++..+..++
T Consensus 11 ~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYY-KQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 3444444444 45555555555555444321 133444444555555555555555555554432 23344444555555
Q ss_pred HcCCChHHHHHHHHHHHHc
Q 042941 254 AKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~ 272 (481)
...|++++|...|+++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 5555555555555555443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.4e-06 Score=72.09 Aligned_cols=156 Identities=11% Similarity=-0.041 Sum_probs=86.1
Q ss_pred cCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCc-ccHHhHHHHHHHHHhcCCH
Q 042941 150 RYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR----GIC-YDVVSFSCIISCYSKARNL 224 (481)
Q Consensus 150 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~ll~~~~~~~~~ 224 (481)
..|++++|.++++.+..........+..+...+. ..|++++|...+++.... +.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYA-FMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 3455555555322222211224455555666666 666666666666655441 111 1234566666677777777
Q ss_pred HHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC---CCCC--hhhHHHHHHHHHhcCC
Q 042941 225 HKVLRLFDQMKRM----GIEC--DRKVYNAVIHALAKGRLVKDAISLMKSMEEKG---VAPN--VVTYNSLIKPLCKARK 293 (481)
Q Consensus 225 ~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~--~~~~~~li~~~~~~g~ 293 (481)
++|...+++..+. +..+ ....+..+...+...|++++|...+++..+.. ..+. ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777665543 1111 13345666677777777777777777665321 0111 2234566667777888
Q ss_pred HHHHHHHHHHHHH
Q 042941 294 LDEARQAFDEMLQ 306 (481)
Q Consensus 294 ~~~a~~~~~~m~~ 306 (481)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888877776543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.7e-06 Score=65.84 Aligned_cols=96 Identities=9% Similarity=-0.059 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHH
Q 042941 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQG 143 (481)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (481)
+...+..+...+.+.|++++|...|+...+. ++.+..++..+...+...|++++|+..+++..+.. +.+...+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR----NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT----CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 4555666666666666666666666666554 22235555556666666666666666666655543 223444555
Q ss_pred HHHHHHcCCChhhHHHHHhhc
Q 042941 144 LLSALCRYKNVQDAEHLMFCN 164 (481)
Q Consensus 144 ll~~~~~~~~~~~a~~~~~~~ 164 (481)
+..++...|++++|...|++.
T Consensus 90 la~~~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 555555555555555555543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.53 E-value=5.7e-07 Score=78.88 Aligned_cols=194 Identities=8% Similarity=-0.038 Sum_probs=111.3
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 042941 207 DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIK 286 (481)
Q Consensus 207 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 286 (481)
+...+..+...+...|++++|...|+...+.. +.+...|..+..+|.+.|++++|...+++..+.... +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34455666666777777777777777776653 335666777777777777777777777777665433 5566667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 042941 287 PLCKARKLDEARQAFDEMLQRGISPTI-RTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVF 365 (481)
Q Consensus 287 ~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 365 (481)
+|...|++++|...|+...+.+ |+. ..+...+....+.... ..+........+.+......+.. + ..|++++|.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~ 155 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAKK-KRWNSIEERRIHQESELHSYLTR-L-IAAEREREL 155 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHHH-HHHHHHHHTCCCCCCHHHHHHHH-H-HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHH-H-HHHHHHHHH
Confidence 7777777777777777665432 100 0000111111111111 11222223333444444433322 2 368888998
Q ss_pred HHHHHHHHCCCCCCHH-HHHHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 042941 366 KVWNEISENGNGPDRS-SYTALIHALFLN-GKLEEAHQYYMEMKEK 409 (481)
Q Consensus 366 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 409 (481)
+.++...+. .|+.. ....+...+.+. +.+++|.++|.++.+.
T Consensus 156 ~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888877764 34433 334444444444 6788899999887653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=3e-06 Score=64.18 Aligned_cols=119 Identities=16% Similarity=0.079 Sum_probs=70.7
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042941 171 NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVI 250 (481)
Q Consensus 171 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 250 (481)
+...+..+...+. ..|++++|...++........ +...+..+...+...|++++|...++...+.. +.+...+..+.
T Consensus 11 ~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQM-KVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHH-HccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 3445555556666 666666666666666554322 45556666666666666777766666666553 33455666666
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 042941 251 HALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARK 293 (481)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 293 (481)
.++...|++++|...|++..+.... +...+..+..++...|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 6666667777777766666655332 44455555555555544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.52 E-value=5.6e-07 Score=78.95 Aligned_cols=194 Identities=9% Similarity=-0.032 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGW 182 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (481)
...+..+...+...|++++|+..|+...+.. +.+...|..+..++.+.|++++|...+++.....+.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5667777778888888888888888887654 236677777888888888888888888886666666777888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHH
Q 042941 183 CNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDA 262 (481)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 262 (481)
. ..|++++|...|+.....+.. +...+...+....+ ...... +........+.+......+.. + ..|++++|
T Consensus 83 ~-~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~A 154 (281)
T 2c2l_A 83 L-EMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTR-L-IAAERERE 154 (281)
T ss_dssp H-HTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred H-HcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence 8 888888888888877664211 10111111111111 111111 112222333444444333322 2 25778888
Q ss_pred HHHHHHHHHcCCCCChhh-HHHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 042941 263 ISLMKSMEEKGVAPNVVT-YNSLIKPLCKA-RKLDEARQAFDEMLQR 307 (481)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~-~~~li~~~~~~-g~~~~a~~~~~~m~~~ 307 (481)
.+.++...+. .|+... ...+-..+.+. +.+++|.++|.+..+.
T Consensus 155 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8888777654 333332 23333333333 5677888888877553
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.3e-06 Score=64.21 Aligned_cols=100 Identities=8% Similarity=-0.081 Sum_probs=61.8
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHH
Q 042941 101 VTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILN 180 (481)
Q Consensus 101 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 180 (481)
.+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++.....+.+...+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 346666667777777777777777777766543 2245556666666666666666666666544333445555666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 042941 181 GWCNIIGSSREAERVWMEMSQR 202 (481)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~~~~~ 202 (481)
.+. ..|++++|...|++....
T Consensus 93 ~~~-~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALE-AMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHH-HHhhHHHHHHHHHHHHHh
Confidence 666 666666666666665554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.49 E-value=0.00092 Score=63.39 Aligned_cols=343 Identities=6% Similarity=-0.045 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhc-CCC-CCHHhH
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHD-VGRAINAFYAYKRF-KFA-VGIEDF 141 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~-~~~-~~~~~~ 141 (481)
..+|...+..+-. |+++.+..+|++.... .|+ ...|..-+....+.++ .+....+|+..... |.. .+...|
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~--~ps---~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW 88 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYN---LDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLY 88 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCC---HHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCC---HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHH
Confidence 4455555555544 8899999999999885 455 8888888877776663 46677888887753 433 366788
Q ss_pred HHHHHHHHc----CCChhhHHHHHhhccCCCCCc-h-HhHHHHHHHHH------------HhcCCHHHHHHHHHHHHhcC
Q 042941 142 QGLLSALCR----YKNVQDAEHLMFCNKDVFPFN-T-KSFNIILNGWC------------NIIGSSREAERVWMEMSQRG 203 (481)
Q Consensus 142 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~-~-~~~~~l~~~~~------------~~~~~~~~a~~~~~~~~~~g 203 (481)
...+..+.. .++++.+..+|++... .|+. . ..|......-. ...+.+..|..+++.+...-
T Consensus 89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~ 167 (493)
T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI 167 (493)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 888876553 3568889999988654 2322 1 22222222110 01122333444444433210
Q ss_pred CcccHHhHHHHHHHHHhc--CC-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC
Q 042941 204 ICYDVVSFSCIISCYSKA--RN-----LHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAP 276 (481)
Q Consensus 204 ~~~~~~~~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 276 (481)
...+...|...+..-... +- .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..+|++.... +.
T Consensus 168 ~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~ 244 (493)
T 2uy1_A 168 RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SD 244 (493)
T ss_dssp HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CC
T ss_pred hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CC
Confidence 001333555555432221 11 345778899888763 567888988999999999999999999999987 22
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCCC---HHHHHHHHHHHhc---hhHHHHHHHHHHHcCC
Q 042941 277 NVVTYNSLIKPLCKARKLDEARQAFDEMLQRG---------ISPT---IRTYHAFLDIIRT---GEEVFGLLESMRKMGC 341 (481)
Q Consensus 277 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---------~~p~---~~~~~~li~~~~~---~~~~~~~~~~~~~~~~ 341 (481)
+...|. .|+.....++. ++.+.+.- ..+. ...|...+....+ .+.+..+++.. +..
T Consensus 245 ~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~- 315 (493)
T 2uy1_A 245 GMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE- 315 (493)
T ss_dssp SSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-
T ss_pred cHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-
Confidence 332222 23332222222 23322210 0111 1233344443322 24456777766 221
Q ss_pred CCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 042941 342 QPTNDTYIMLIKKFSRWR-QFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDEL 420 (481)
Q Consensus 342 ~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 420 (481)
..+...|......-...+ +.+.|..+|+...+.. +-++..|...+.-..+.|+.+.|..+|+++. .....|..
T Consensus 316 ~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~ 389 (493)
T 2uy1_A 316 GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDS 389 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHH
Confidence 234455543333222333 6999999999988753 2245567777887788999999999999972 23455555
Q ss_pred HHHHHhhhhHHH
Q 042941 421 LQDWSYNKQFVE 432 (481)
Q Consensus 421 l~~~~~~~~~~~ 432 (481)
.+..-...|..+
T Consensus 390 ~~~fE~~~G~~~ 401 (493)
T 2uy1_A 390 MIEYEFMVGSME 401 (493)
T ss_dssp HHHHHHHHSCHH
T ss_pred HHHHHHHCCCHH
Confidence 555433334333
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.3e-06 Score=69.15 Aligned_cols=121 Identities=6% Similarity=0.058 Sum_probs=76.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCCh--HH
Q 042941 185 IIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHA-LAKGRLV--KD 261 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~ 261 (481)
..|++++|...++........ +...+..+...|...|++++|...|+...+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 456666677777666554322 45566667777777777777777777766653 3355566666666 6667776 77
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 262 AISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
|...|+++.+..+. +...+..+...|...|++++|...|+...+..
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 77777777665433 45666667777777777777777777776653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.6e-06 Score=71.80 Aligned_cols=99 Identities=6% Similarity=-0.039 Sum_probs=61.9
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCcc--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC
Q 042941 172 TKSFNIILNGWCNIIGSSREAERVWMEMSQR----GICY--DVVSFSCIISCYSKARNLHKVLRLFDQMKRM----GIEC 241 (481)
Q Consensus 172 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~----g~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~ 241 (481)
...+..+...+. ..|++++|...+++.... +-.+ ....+..+...+...|++++|...+++.... +...
T Consensus 66 ~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 144 (203)
T 3gw4_A 66 HRALHQVGMVER-MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV 144 (203)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchH
Confidence 344555666666 677777777777665443 2111 2345666777777788888888877776542 1110
Q ss_pred -CHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 042941 242 -DRKVYNAVIHALAKGRLVKDAISLMKSMEE 271 (481)
Q Consensus 242 -~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (481)
-..++..+...+...|++++|...+++..+
T Consensus 145 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 145 AIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 123356677778888888888888877654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.48 E-value=3.8e-06 Score=62.93 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 042941 105 TLLILIRRYCAVHDVGRAINAFYAYK 130 (481)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~ 130 (481)
.+..+...+...|++++|...++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~ 36 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKAL 36 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33334444444444444444444443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.48 E-value=8e-07 Score=69.45 Aligned_cols=102 Identities=9% Similarity=-0.046 Sum_probs=70.8
Q ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHH
Q 042941 99 SLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNII 178 (481)
Q Consensus 99 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 178 (481)
++.+...+..+...+...|++++|+..|+.....+ +.++..|..+..+|...|++++|+..|++.....|.+...|..+
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 33345666677777777777777777777777654 23566677777777777777777777776555455566677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 042941 179 LNGWCNIIGSSREAERVWMEMSQR 202 (481)
Q Consensus 179 ~~~~~~~~~~~~~a~~~~~~~~~~ 202 (481)
..+|. ..|++++|...|+.....
T Consensus 111 g~~~~-~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQL-RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHh
Confidence 77777 777777777777777665
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=2.1e-06 Score=67.04 Aligned_cols=99 Identities=11% Similarity=0.045 Sum_probs=56.2
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042941 171 NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVI 250 (481)
Q Consensus 171 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 250 (481)
+...+..+...+. ..|++++|...|+........ +...|..+..++...|++++|...|+...... +.+...+..+.
T Consensus 20 ~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQY-QSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHH
T ss_pred hHHHHHHHHHHHH-HcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence 4444555555555 566666666666665554322 44555555566666666666666666665543 33445555566
Q ss_pred HHHHcCCChHHHHHHHHHHHHc
Q 042941 251 HALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
.+|...|++++|...|+...+.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666655543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.5e-06 Score=70.24 Aligned_cols=122 Identities=8% Similarity=0.046 Sum_probs=77.7
Q ss_pred HcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHH-HHhcCCH--H
Q 042941 149 CRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISC-YSKARNL--H 225 (481)
Q Consensus 149 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~-~~~~~~~--~ 225 (481)
...|++++|...++......|.+...+..+...+. ..|++++|...|+........ +...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYL-WQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 34556666666666544434456666777777777 777777777777776655322 45556666666 5667776 7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 042941 226 KVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKG 273 (481)
Q Consensus 226 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 273 (481)
+|...++...+.. +.+...+..+..+|...|++++|...|+++.+..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 7777777777653 3456667777777777777777777777777653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=7.6e-07 Score=73.57 Aligned_cols=156 Identities=12% Similarity=0.020 Sum_probs=86.4
Q ss_pred HHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc---------------HHhHH
Q 042941 148 LCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYD---------------VVSFS 212 (481)
Q Consensus 148 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~---------------~~~~~ 212 (481)
....|+++.+.+.++......+.....+..+...+. ..|++++|...|++......... ...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFF-KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 334445555544443221111123344555666666 77777777777777765422211 25666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 042941 213 CIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKAR 292 (481)
Q Consensus 213 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 292 (481)
.+..++...|++++|...++...+.. +.+...+..+..+|...|++++|...|++..+.... +...+..+..++...+
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHH
Confidence 67777777888888888887777763 446667777777777888888888888777765433 4556666666666666
Q ss_pred CHHHHH-HHHHHHHH
Q 042941 293 KLDEAR-QAFDEMLQ 306 (481)
Q Consensus 293 ~~~~a~-~~~~~m~~ 306 (481)
+..++. ..+..+..
T Consensus 171 ~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 171 EARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHC-----------
T ss_pred HHHHHHHHHHHHHhc
Confidence 655555 44444433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=5.2e-05 Score=67.34 Aligned_cols=221 Identities=8% Similarity=-0.052 Sum_probs=161.8
Q ss_pred cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccC-ChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhc-C-CH
Q 042941 43 NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVR-KFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAV-H-DV 119 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~-~-~~ 119 (481)
...++|+++++.+....+ -+..+|+..-.++...| .+++++++++.+... ++-+..+|+.-...+... + ++
T Consensus 68 e~se~AL~lt~~~L~~nP--~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~----nPKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNP--AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ----NLKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp CCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----TCCCHHHHHHHHHHHHHHCCSCC
T ss_pred CCCHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhcCCCh
Confidence 344679999999875442 46778999888888888 599999999999987 555588888777766666 6 88
Q ss_pred HHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChh--------hHHHHHhhccCCCCCchHhHHHHHHHHHHhcCC---
Q 042941 120 GRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQ--------DAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGS--- 188 (481)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--- 188 (481)
++++..++.+.+.. +-+..+|+.-.-++.+.+.++ ++++.++++....+.|...|+.....+. +.+.
T Consensus 142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~-~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRV-SRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT-TSTTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcccccc
Confidence 99999999999865 347778877655555555555 7888887766666778889988888877 6665
Q ss_pred ----HHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHcC-----C
Q 042941 189 ----SREAERVWMEMSQRGICYDVVSFSCIISCYSKARNL--------------------HKVLRLFDQMKRMG-----I 239 (481)
Q Consensus 189 ----~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~--------------------~~a~~~~~~~~~~~-----~ 239 (481)
++++++.+++.....+. |...|+-+-..+.+.|.. ....++...+...+ -
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred chHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 68899999888877544 777887766666665543 23333333333221 1
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 240 ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 240 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
.++......+...|...|+.++|.++++.+.+.
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 367788889999999999999999999999754
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=2.7e-06 Score=64.44 Aligned_cols=97 Identities=11% Similarity=0.010 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGW 182 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (481)
...+..+...+...|++++|+..++...... +.+...+..+..++...|++++|...+.......+.+...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4445555555555666666666665555432 123444444444444444554444444443222233333444444444
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 042941 183 CNIIGSSREAERVWMEMSQ 201 (481)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~ 201 (481)
. ..|++++|...|+....
T Consensus 91 ~-~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 91 S-SLNKHVEAVAYYKKALE 108 (131)
T ss_dssp H-HTTCHHHHHHHHHHHHH
T ss_pred H-HhCCHHHHHHHHHHHHh
Confidence 4 44444444444444433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.4e-06 Score=68.07 Aligned_cols=99 Identities=15% Similarity=-0.059 Sum_probs=60.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHH
Q 042941 102 TKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNG 181 (481)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 181 (481)
+...+..+...+...|++++|+..|+.....+ +.+...|..+..++...|++++|+..|++.....|.+...+..+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 35555566666666666777766666666543 23555566666666666666666666666444344455666666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 042941 182 WCNIIGSSREAERVWMEMSQR 202 (481)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~ 202 (481)
+. ..|++++|...|+.....
T Consensus 99 ~~-~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LL-QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HH-HTTCHHHHHHHHHHHHHH
T ss_pred HH-HcCCHHHHHHHHHHHHHH
Confidence 66 666666666666665544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.38 E-value=6.3e-06 Score=63.78 Aligned_cols=99 Identities=10% Similarity=0.012 Sum_probs=59.9
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042941 171 NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVI 250 (481)
Q Consensus 171 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 250 (481)
+...+..+...+. ..|++++|...|+........ +...|..+..++...|++++|...|+.....+ +.+...+..+.
T Consensus 17 ~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 93 (142)
T 2xcb_A 17 TLEQLYALGFNQY-QAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence 3444455555555 666666666666666655332 45556666666666666666666666666653 33455566666
Q ss_pred HHHHcCCChHHHHHHHHHHHHc
Q 042941 251 HALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
.+|...|++++|...|+...+.
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666666544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.38 E-value=5.3e-06 Score=71.17 Aligned_cols=190 Identities=9% Similarity=-0.042 Sum_probs=133.5
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHH-------HHHHHcCCChhhHHHHHhhccCCCCC-------c------
Q 042941 112 RYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGL-------LSALCRYKNVQDAEHLMFCNKDVFPF-------N------ 171 (481)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~-------~------ 171 (481)
++ ..++...|.+.|.++..... -....|..+ ...+.+.+...++...+..... ..| +
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~-l~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ-ISMSTLNARIAIGGLYG 92 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT-CCGGGGCCEEECCTTTC
T ss_pred cc-cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc-CChhhhhhhhccCCccc
Confidence 44 57999999999999998652 245677766 3455554445555544433211 011 1
Q ss_pred ---------hHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 042941 172 ---------TKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECD 242 (481)
Q Consensus 172 ---------~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 242 (481)
....-.+...+. ..|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~-~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~ 168 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEA-AQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKF 168 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHH-HHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHH
T ss_pred ccccccCCHhHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Ccc
Confidence 123344566677 8999999999999887764 333355556668899999999999998554431 121
Q ss_pred --HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 243 --RKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPN--VVTYNSLIKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 243 --~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23677788899999999999999999985432243 3355666778889999999999999998864
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00049 Score=60.81 Aligned_cols=220 Identities=13% Similarity=0.024 Sum_probs=140.4
Q ss_pred ccCChh-HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhcCCCCCHHhHHHHH
Q 042941 77 KVRKFD-TAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHD----------VGRAINAFYAYKRFKFAVGIEDFQGLL 145 (481)
Q Consensus 77 ~~g~~~-~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll 145 (481)
+.|.+. +|+++++.+... +|....+|+.--..+...+. +++++.+++.+...+. -+..+|+.-.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~----nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~ 115 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA----NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRC 115 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 445554 788888888876 33345555543333333222 5678888888877653 3667777766
Q ss_pred HHHHcCC--ChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhc-
Q 042941 146 SALCRYK--NVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGS-SREAERVWMEMSQRGICYDVVSFSCIISCYSKA- 221 (481)
Q Consensus 146 ~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~- 221 (481)
-++...+ .+++++.+++.+....+.|...|+.-...+. ..|. ++++++.++.+.+..+. |...|+.....+.+.
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~-~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAA-QAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHS
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhh
Confidence 6666666 4778888887766666677778877776666 6676 58888888888877554 666776655555544
Q ss_pred -------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-----------CChHHHHHHHHHHHHcCCCCC
Q 042941 222 -------------RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKG-----------RLVKDAISLMKSMEEKGVAPN 277 (481)
Q Consensus 222 -------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~ 277 (481)
+.++++++.+....... +-|...|+-+-..+.+. +.++++++.++++.+.. |+
T Consensus 194 ~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~--pd 270 (331)
T 3dss_A 194 PQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE--PE 270 (331)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--TT
T ss_pred hccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC--cc
Confidence 34778888888887764 55777776555455444 34677888888887763 33
Q ss_pred hhhHHHHHHHH-----HhcCCHHHHHHHHHHHHHC
Q 042941 278 VVTYNSLIKPL-----CKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 278 ~~~~~~li~~~-----~~~g~~~~a~~~~~~m~~~ 307 (481)
. .|+.+-.+. ...|..+++...+.++++-
T Consensus 271 ~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 271 N-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp C-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred c-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 3 343222211 1345566677777776654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.35 E-value=6.8e-06 Score=74.04 Aligned_cols=164 Identities=9% Similarity=-0.032 Sum_probs=88.7
Q ss_pred CChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHH
Q 042941 79 RKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAE 158 (481)
Q Consensus 79 g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 158 (481)
+++++|.+.|+...+. ++.....+..+...+...|++++|+..|++..+...... .+ ..+.+.
T Consensus 127 ~~~~~A~~~~~~a~~~----~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--~~-----------~~~~~~ 189 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEE----KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYES--SF-----------SNEEAQ 189 (336)
T ss_dssp EEEECCCCGGGCCHHH----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC--CC-----------CSHHHH
T ss_pred eecccccchhcCCHHH----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccc--cC-----------ChHHHH
Confidence 3444555554443322 222366777788888888888888888888876542211 00 000000
Q ss_pred HHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042941 159 HLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMG 238 (481)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 238 (481)
.+- +.....|..+..++. +.|++++|+..+++....... +...|..+..+|...|++++|...|+...+..
T Consensus 190 ~~~-------~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 190 KAQ-------ALRLASHLNLAMCHL-KLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260 (336)
T ss_dssp HHH-------HHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHH-------HHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 000 001344555555555 666666666666666554322 45555666666666666666666666666553
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHH-HHHHHHH
Q 042941 239 IECDRKVYNAVIHALAKGRLVKDA-ISLMKSM 269 (481)
Q Consensus 239 ~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~~ 269 (481)
+.+...+..+..++...|+.++| ...|..|
T Consensus 261 -P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 261 -PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp -SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666666666655 3344444
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=6.3e-07 Score=74.05 Aligned_cols=166 Identities=6% Similarity=-0.072 Sum_probs=72.4
Q ss_pred HHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcC
Q 042941 72 IAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRY 151 (481)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 151 (481)
+......|+++.+.+.|+.-... .......+..+...+...|++++|+..|++..+.... ++ .+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~-~~~~~------- 77 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEE----KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TE-EWDDQ------- 77 (198)
T ss_dssp -----------CCCSGGGCCHHH----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CT-TCCCH-------
T ss_pred hhhhhhhhhccccCchhhCCHHH----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-cc-ccchh-------
Confidence 33344445555555555432221 1112445666666777777777777777777653211 11 00000
Q ss_pred CChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHH
Q 042941 152 KNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLF 231 (481)
Q Consensus 152 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 231 (481)
....-... .....+..+..++. ..|++++|+..++....... .+...+..+..++...|++++|...|
T Consensus 78 -~~~~~~~~---------~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~ 145 (198)
T 2fbn_A 78 -ILLDKKKN---------IEISCNLNLATCYN-KNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENL 145 (198)
T ss_dssp -HHHHHHHH---------HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -hHHHHHHH---------HHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHH
Confidence 00000000 01234444555555 55556666555555554422 13445555555555666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 042941 232 DQMKRMGIECDRKVYNAVIHALAKGRLVKDAI 263 (481)
Q Consensus 232 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 263 (481)
+...+.. +.+...+..+..++...++.+++.
T Consensus 146 ~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 146 YKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5555542 234445555555555554444444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-05 Score=60.56 Aligned_cols=97 Identities=16% Similarity=0.107 Sum_probs=58.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 042941 209 VSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPL 288 (481)
Q Consensus 209 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 288 (481)
..+..+...+.+.|++++|...|+...+.. +.+...|..+..++.+.|++++|...|++..+..+. +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 344555555666666666666666666553 335556666666666666666666666666655433 455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 042941 289 CKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 289 ~~~g~~~~a~~~~~~m~~~ 307 (481)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 6666666666666665543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.8e-05 Score=59.67 Aligned_cols=98 Identities=11% Similarity=0.067 Sum_probs=73.3
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042941 172 TKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIH 251 (481)
Q Consensus 172 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 251 (481)
...+..+...+. ..|++++|+..|++..+.... +...|..+..++.+.|++++|...++...+.+ +.+...+..+..
T Consensus 4 a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYF-TKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 345666666777 788888888888877766433 56677777888888888888888888877764 445677777888
Q ss_pred HHHcCCChHHHHHHHHHHHHc
Q 042941 252 ALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~ 272 (481)
++...|++++|...|++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 888888888888888877765
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=1.4e-05 Score=59.01 Aligned_cols=97 Identities=12% Similarity=-0.069 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHH
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGL 144 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 144 (481)
...+..+...+...|++++|...|+..... ++.+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 78 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL----DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344555555666666666666666665554 22225555556666666666666666666655543 1234455555
Q ss_pred HHHHHcCCChhhHHHHHhhccC
Q 042941 145 LSALCRYKNVQDAEHLMFCNKD 166 (481)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~ 166 (481)
..++...|++++|...++....
T Consensus 79 a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 79 AAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555555433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=4.3e-05 Score=56.33 Aligned_cols=94 Identities=15% Similarity=0.009 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042941 175 FNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALA 254 (481)
Q Consensus 175 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (481)
+..+...+. ..|++++|...|+........ +...+..+...+...|++++|...++...+.. +.+...+..+..++.
T Consensus 7 ~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 7 LKEKGNKAL-SVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 333344444 444444444444444433211 33344444444444444444444444444432 223344444444444
Q ss_pred cCCChHHHHHHHHHHHH
Q 042941 255 KGRLVKDAISLMKSMEE 271 (481)
Q Consensus 255 ~~g~~~~a~~~~~~~~~ 271 (481)
..|++++|...++...+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 44444444444444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.5e-05 Score=58.26 Aligned_cols=98 Identities=9% Similarity=-0.040 Sum_probs=50.3
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHH
Q 042941 172 TKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIEC--DRKVYNAV 249 (481)
Q Consensus 172 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 249 (481)
...+..+...+. ..|++++|...++...+.... +...+..+...+...|++++|...++...+.. +. +...+..+
T Consensus 6 ~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQY-DAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHH-SSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred HHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 334444444555 555555555555555444222 34445555555555555555555555555542 22 34455555
Q ss_pred HHHHHcC-CChHHHHHHHHHHHHc
Q 042941 250 IHALAKG-RLVKDAISLMKSMEEK 272 (481)
Q Consensus 250 i~~~~~~-g~~~~a~~~~~~~~~~ 272 (481)
..++... |++++|.+.++...+.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 5555555 5555555555555544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.28 E-value=2.1e-05 Score=60.80 Aligned_cols=98 Identities=9% Similarity=-0.004 Sum_probs=85.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 042941 208 VVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKP 287 (481)
Q Consensus 208 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 287 (481)
...+..+...+.+.|++++|...|+.....+ +.+...|..+..+|...|++++|...|++..+..+. +...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 3456667788899999999999999999875 557888999999999999999999999999987654 67778889999
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 042941 288 LCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 288 ~~~~g~~~~a~~~~~~m~~~ 307 (481)
|...|++++|...|+...+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999988765
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00039 Score=61.44 Aligned_cols=205 Identities=13% Similarity=0.039 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-HHHHHHH
Q 042941 224 LHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGR--LVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARK-LDEARQA 300 (481)
Q Consensus 224 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~ 300 (481)
+++++.+++.+.... +-+..+|+.-.-++...+ .+++++.+++.+.+..++ |...|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 566777777777654 446667776666666666 377888888888777655 67777766666666676 5777887
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 042941 301 FDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDR 380 (481)
Q Consensus 301 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 380 (481)
+..+.+.++. |...|+.....+... ... .+... ..-...+.++++++.+.......+ -|.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l----------~~~--~~~~~------~~~~~~~~~~eEle~~~~ai~~~P-~d~ 227 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQL----------HPQ--PDSGP------QGRLPENVLLKELELVQNAFFTDP-NDQ 227 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHH----------SCC--C------------CCCHHHHHHHHHHHHHHHHHST-TCH
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHh----------hhc--ccccc------ccccchHHHHHHHHHHHHHHHhCC-CCH
Confidence 7777776533 444443332221110 000 00000 000011346677777777776543 366
Q ss_pred HHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHhHHHHHHH-----HH---hhhhHHHHHHHHHhhc
Q 042941 381 SSYTALIHALFLN-----------GKLEEAHQYYMEMKEKQLLPEPKTDELLQD-----WS---YNKQFVERQIASLKAH 441 (481)
Q Consensus 381 ~~~~~l~~~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~-----~~---~~~~~~~~~~~~~~~~ 441 (481)
..|+.+-..+.+. +.++++++.++++.+ ..||. .+..+.. .+ +..+.....+..+.+.
T Consensus 228 SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 228 SAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 6776555555544 457888888888887 45654 2322111 11 2223455677888888
Q ss_pred CccCCCCccccc
Q 042941 442 QPQSGQNTRVIS 453 (481)
Q Consensus 442 ~~~~~~~~~~l~ 453 (481)
+|....-|..+.
T Consensus 305 Dp~r~~~y~d~~ 316 (331)
T 3dss_A 305 DPMRAAYLDDLR 316 (331)
T ss_dssp CGGGHHHHHHHH
T ss_pred CcchhhHHHHHH
Confidence 888666665554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.2e-05 Score=61.63 Aligned_cols=97 Identities=9% Similarity=-0.128 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGW 182 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (481)
...+..+...+...|++++|+..|+...... +.+...+..+..++...|++++|...++......|.+...+..+...+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 5555555555556666666666665555443 223444555555555555555555555443333333444555555555
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 042941 183 CNIIGSSREAERVWMEMSQ 201 (481)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~ 201 (481)
. ..|++++|...|+....
T Consensus 88 ~-~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 L-EMESYDEAIANLQRAYS 105 (137)
T ss_dssp H-HTTCHHHHHHHHHHHHH
T ss_pred H-HHhhHHHHHHHHHHHHH
Confidence 5 55555555555555443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.26 E-value=8.4e-06 Score=59.67 Aligned_cols=99 Identities=10% Similarity=-0.009 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--CHHhH
Q 042941 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAV--GIEDF 141 (481)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~ 141 (481)
+...+..+...+...|++++|...|+...+. ++.+..++..+...+...|++++|+..+++..+.. +. +...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 79 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL----DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVW 79 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHH
Confidence 4556667777777888888888888777665 22236677777777777888888888887777653 22 45666
Q ss_pred HHHHHHHHcC-CChhhHHHHHhhccCC
Q 042941 142 QGLLSALCRY-KNVQDAEHLMFCNKDV 167 (481)
Q Consensus 142 ~~ll~~~~~~-~~~~~a~~~~~~~~~~ 167 (481)
..+..++... |++++|.+.+......
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 7777777777 7777777777765443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.25 E-value=3.5e-05 Score=58.88 Aligned_cols=98 Identities=10% Similarity=-0.046 Sum_probs=56.8
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 042941 207 DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIK 286 (481)
Q Consensus 207 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 286 (481)
+...+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...+++..+.... +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 34455555556666666666666666655543 334555566666666666666666666666554332 4555555666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 042941 287 PLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 287 ~~~~~g~~~~a~~~~~~m~~ 306 (481)
+|...|++++|...|+...+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666665543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.7e-05 Score=61.02 Aligned_cols=95 Identities=8% Similarity=0.048 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 042941 210 SFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLC 289 (481)
Q Consensus 210 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 289 (481)
.+..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|...|++..+.... +...|..+..+|.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34444444455555555555555544432 224444445555555555555555555555444322 3444444555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 042941 290 KARKLDEARQAFDEMLQ 306 (481)
Q Consensus 290 ~~g~~~~a~~~~~~m~~ 306 (481)
..|++++|...|++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 55555555555554443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.8e-05 Score=57.91 Aligned_cols=98 Identities=13% Similarity=0.153 Sum_probs=62.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC--CC----hhhHH
Q 042941 209 VSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVA--PN----VVTYN 282 (481)
Q Consensus 209 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~ 282 (481)
.++..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..+++..+.... ++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345566667777777777777777776653 445666777777777777777777777766543211 01 12455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 283 SLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 283 ~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
.+-.++...|++++|++.|++....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566667777777777777776553
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.19 E-value=5.3e-05 Score=60.10 Aligned_cols=101 Identities=11% Similarity=-0.059 Sum_probs=79.0
Q ss_pred CchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 042941 170 FNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAV 249 (481)
Q Consensus 170 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 249 (481)
.+...+..+...+. ..|++++|+..|++....... +...|..+..+|.+.|++++|+..|+...+.. +.+...|..+
T Consensus 9 ~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 9 PESDKLKSEGNAAM-ARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 34556777777777 888888888888888776433 56777888888888888888888888888764 4467788888
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcC
Q 042941 250 IHALAKGRLVKDAISLMKSMEEKG 273 (481)
Q Consensus 250 i~~~~~~g~~~~a~~~~~~~~~~~ 273 (481)
..+|...|++++|...|++..+..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC
Confidence 888888888888888888887653
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.16 E-value=8.9e-05 Score=57.33 Aligned_cols=99 Identities=13% Similarity=-0.011 Sum_probs=61.6
Q ss_pred CchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 042941 170 FNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYD----VVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKV 245 (481)
Q Consensus 170 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 245 (481)
.+...+..+...+. ..|++++|...|+...+.. |+ ...+..+..++...|++++|...++...+.. +.+...
T Consensus 26 ~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 26 SSVEQLRKEGNELF-KCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred HHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 34455666666666 6677777777777666542 33 4455566666666677777777666666553 334556
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 246 YNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 246 ~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
+..+..++...|++++|...|++..+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 666666666666777776666666654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.3e-05 Score=58.26 Aligned_cols=24 Identities=13% Similarity=-0.125 Sum_probs=9.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Q 042941 107 LILIRRYCAVHDVGRAINAFYAYK 130 (481)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~~~ 130 (481)
..+...+.+.|++++|+..|++..
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al 35 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAI 35 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333334444444444444444433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.14 E-value=6.1e-05 Score=56.72 Aligned_cols=97 Identities=12% Similarity=0.133 Sum_probs=52.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC--CC----hhhHHH
Q 042941 210 SFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVA--PN----VVTYNS 283 (481)
Q Consensus 210 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 283 (481)
.+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...+++..+.... ++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34445555555566666666665555543 334455555555555666666666666555443211 11 444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 284 LIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 284 li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
+..++...|++++|...|+...+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 555666666666666666665554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00011 Score=68.70 Aligned_cols=201 Identities=10% Similarity=0.004 Sum_probs=123.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCccc----------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC
Q 042941 180 NGWCNIIGSSREAERVWMEMSQRGICYD----------------VVSFSCIISCYSKARNLHKVLRLFDQMKRMG-IECD 242 (481)
Q Consensus 180 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 242 (481)
..+. +.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+...- ..++
T Consensus 12 ~~l~-~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 12 RRLV-NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHH-HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHH-HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3345 67777777777777765422110 1235667788888888888888887766521 1112
Q ss_pred H----HHHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 042941 243 R----KVYNAVIHALAKGRLVKDAISLMKSMEEK----GVAPN-VVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTI 313 (481)
Q Consensus 243 ~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 313 (481)
. .+.+.+-..+...|+++.|..+++..... +..+. ..++..+...|...|++++|..+++++...-...+
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~- 169 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD- 169 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS-
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc-
Confidence 1 12233333444567888888888776532 22222 34567778888888999999888887654211100
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCC-C-C--HHHHHHHH
Q 042941 314 RTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISEN--GNG-P-D--RSSYTALI 387 (481)
Q Consensus 314 ~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~-~-~--~~~~~~l~ 387 (481)
.-+....++..++..|...|++++|..++++.... .+. | . ...+..+.
T Consensus 170 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g 223 (434)
T 4b4t_Q 170 --------------------------DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSG 223 (434)
T ss_dssp --------------------------CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred --------------------------cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Confidence 00112346777778888888888888888776541 111 1 1 23455666
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 042941 388 HALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~~ 408 (481)
..+...|++++|...|.+..+
T Consensus 224 ~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 224 ILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 667778888888877766543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00011 Score=56.82 Aligned_cols=63 Identities=10% Similarity=-0.051 Sum_probs=31.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042941 173 KSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM 237 (481)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 237 (481)
..+..+...+. ..|++++|...++........ +...+..+..++...|++++|...|+...+.
T Consensus 66 ~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 66 VLHRNRAACHL-KLEDYDKAETEASKAIEKDGG-DVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHccHHHHHHHHHHHHhhCcc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34444444444 455555555555554443211 3444444555555555555555555555543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.12 E-value=3.5e-05 Score=58.12 Aligned_cols=98 Identities=14% Similarity=0.086 Sum_probs=59.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHH
Q 042941 173 KSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGI--ECD----RKVY 246 (481)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 246 (481)
..+..+...+. ..|++++|...|+....... .+...+..+...+...|++++|...++....... .++ ..++
T Consensus 5 ~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAY-KKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 34555555566 66666666666666655432 2445566666666666777777766666655421 111 4556
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 247 NAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 247 ~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
..+..++...|++++|...|+...+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 66666677777777777777766664
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.09 E-value=7.4e-06 Score=77.22 Aligned_cols=131 Identities=14% Similarity=0.040 Sum_probs=93.0
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc--------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 171 NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYD--------------VVSFSCIISCYSKARNLHKVLRLFDQMKR 236 (481)
Q Consensus 171 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 236 (481)
....+..+...+. +.|++++|...|++..+...... ...|..+..+|.+.|++++|+..++...+
T Consensus 267 ~a~~~~~~G~~~~-~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 267 QAAIVKEKGTVYF-KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3456777777788 88899999988888776522211 46777777888888888888888888887
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH-HHHHH
Q 042941 237 MGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQ-AFDEM 304 (481)
Q Consensus 237 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~-~~~~m 304 (481)
.. +.+...|..+..+|...|++++|...|++..+..+. +...+..+..++.+.++.+++.. .++.|
T Consensus 346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 446777888888888888888888888888776443 55667777777777777776653 34444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=4e-05 Score=57.21 Aligned_cols=91 Identities=11% Similarity=0.019 Sum_probs=45.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 042941 214 IISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARK 293 (481)
Q Consensus 214 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 293 (481)
+...+.+.|++++|...|+...+.. +.+...+..+..++...|++++|...|++..+..+. +...+..+..+|...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 3344445555555555555555442 234444555555555555555555555555544332 34444455555555555
Q ss_pred HHHHHHHHHHHHH
Q 042941 294 LDEARQAFDEMLQ 306 (481)
Q Consensus 294 ~~~a~~~~~~m~~ 306 (481)
+++|...+++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00036 Score=65.21 Aligned_cols=198 Identities=9% Similarity=-0.065 Sum_probs=105.8
Q ss_pred HHHHhccCChhHHHHHHHHHhcCCCCCCcc-------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC
Q 042941 72 IAILGKVRKFDTAWALIDEMRGGETGPSLV-------------TKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFA-VG 137 (481)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 137 (481)
...+.+.|++++|++.|..+.+........ ...++..+...|...|++++|...+..+...-.. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 445667788888888888877642211100 0134666777888888888888887776542111 11
Q ss_pred HH----hHHHHHHHHHcCCChhhHHHHHhhcc------CCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC-
Q 042941 138 IE----DFQGLLSALCRYKNVQDAEHLMFCNK------DVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR--GI- 204 (481)
Q Consensus 138 ~~----~~~~ll~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~--g~- 204 (481)
.. +.+.+-..+...|+.+.+..++.... .....-..++..+...+. ..|++++|..+++.+... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHY-QKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH-HccChHHHHHHHHHHHHHHHhcc
Confidence 11 12223333444566666666664421 111122345555666666 667777777666655432 11
Q ss_pred -cc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 042941 205 -CY-DVVSFSCIISCYSKARNLHKVLRLFDQMKRM----GIECD--RKVYNAVIHALAKGRLVKDAISLMKSME 270 (481)
Q Consensus 205 -~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~ 270 (481)
.+ ....+..++..|...|++++|..+++..... +.++. ...+..+...+...|+++.|...|.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 1235556666666666666666666655432 11111 1234444455556666666666655543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=2.3e-05 Score=58.58 Aligned_cols=93 Identities=12% Similarity=-0.082 Sum_probs=60.4
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 042941 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSA 147 (481)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 147 (481)
+..+...+.+.|++++|...|+...+. ++.+...|..+...+...|++++|+..|++..+.+. -+...+..+..+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~ 94 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK----EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVS 94 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 445556666777777777777777665 333466677777777777777777777777766542 245566666666
Q ss_pred HHcCCChhhHHHHHhhcc
Q 042941 148 LCRYKNVQDAEHLMFCNK 165 (481)
Q Consensus 148 ~~~~~~~~~a~~~~~~~~ 165 (481)
+...|++++|...+++..
T Consensus 95 ~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 666677777766666543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.97 E-value=6.8e-05 Score=58.92 Aligned_cols=133 Identities=11% Similarity=0.029 Sum_probs=84.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc-cc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-C
Q 042941 173 KSFNIILNGWCNIIGSSREAERVWMEMSQRGIC-YD----VVSFSCIISCYSKARNLHKVLRLFDQMKRMG----IEC-D 242 (481)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~ 242 (481)
.++..+...+. ..|++++|...+++....... ++ ..++..+...+...|++++|...++...+.. ..+ .
T Consensus 10 ~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHY-LLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 34555666666 677777777777765543111 11 1356667777778888888888887765431 111 1
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 243 RKVYNAVIHALAKGRLVKDAISLMKSMEEK----GVA-PNVVTYNSLIKPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 243 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 306 (481)
...+..+...+...|++++|...+++..+. +.. .....+..+...+...|++++|...+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345666777788888888888888776543 111 1134566677778888888888888887654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.96 E-value=3.9e-05 Score=72.63 Aligned_cols=118 Identities=7% Similarity=-0.015 Sum_probs=87.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChH
Q 042941 181 GWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVK 260 (481)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 260 (481)
.+. +.|++++|.+.|++..+.... +..+|..+..+|.+.|++++|.+.+++..+.. +.+...+..+..+|...|+++
T Consensus 15 ~~~-~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYF-KAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STT-TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHH-HhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 344 678888999888888776333 57788888888889999999999998888874 456778888888899999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHH--HHhcCCHHHHHHHHH
Q 042941 261 DAISLMKSMEEKGVAPNVVTYNSLIKP--LCKARKLDEARQAFD 302 (481)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 302 (481)
+|.+.|++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999988876433 44455555555 777888999998887
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00043 Score=51.96 Aligned_cols=91 Identities=8% Similarity=-0.052 Sum_probs=44.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCccc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHH
Q 042941 180 NGWCNIIGSSREAERVWMEMSQRGICYD--VVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECD---RKVYNAVIHALA 254 (481)
Q Consensus 180 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~ 254 (481)
..+. ..|++++|...|+.......... ...+..+..++...|++++|...|+...+.. +.+ ...+..+..++.
T Consensus 10 ~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 10 FDAL-KNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHH-HTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHH
T ss_pred HHHH-HhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHH
Confidence 3344 45555555555555554322111 0244444555555555555555555555542 112 334444555555
Q ss_pred cCCChHHHHHHHHHHHHc
Q 042941 255 KGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 255 ~~g~~~~a~~~~~~~~~~ 272 (481)
..|++++|...|+.+.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 555555555555555544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.95 E-value=5.8e-05 Score=59.32 Aligned_cols=28 Identities=11% Similarity=-0.116 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042941 104 QTLLILIRRYCAVHDVGRAINAFYAYKR 131 (481)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~~~~ 131 (481)
.++..+...+...|++++|+..+++..+
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~ 37 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLL 37 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3455555666666666666666666553
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00026 Score=53.17 Aligned_cols=63 Identities=8% Similarity=-0.018 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042941 174 SFNIILNGWCNIIGSSREAERVWMEMSQRGICYD--VVSFSCIISCYSKARNLHKVLRLFDQMKRM 237 (481)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 237 (481)
.+..+...+. ..|++++|...|+.......... ...+..+..++...|++++|...|+.+.+.
T Consensus 41 ~~~~lg~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 41 ALYWLGESYY-ATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4444444455 55555555555555554422210 334444555555566666666666555554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.87 E-value=3.4e-05 Score=56.35 Aligned_cols=98 Identities=11% Similarity=-0.130 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-----
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG----- 137 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----- 137 (481)
++...+..+...+.+.|++++|.+.|++..+. ++.+..++..+..++...|++++|+..+++..+.. |+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 75 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITA----QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVA 75 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHH
Confidence 35677888889999999999999999998876 33347888899999999999999999999988754 33
Q ss_pred --HHhHHHHHHHHHcCCChhhHHHHHhhccC
Q 042941 138 --IEDFQGLLSALCRYKNVQDAEHLMFCNKD 166 (481)
Q Consensus 138 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 166 (481)
...+..+..++...|+.+.|...++++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 106 (111)
T 2l6j_A 76 IRSKLQYRLELAQGAVGSVQIPVVEVDELPE 106 (111)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCSSSSSSCSS
T ss_pred HHHHHHHHHHHHHHHHHhHhhhHhHHHHhHH
Confidence 44556666777777777777666655443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00014 Score=68.43 Aligned_cols=130 Identities=11% Similarity=-0.000 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--------------HHhHHHHHHHHHcCCChhhHHHHHhhccCCC
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG--------------IEDFQGLLSALCRYKNVQDAEHLMFCNKDVF 168 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 168 (481)
...+..+...+.+.|++++|+..|++..+...... ...|..+..+|.+.|++++|+..+++.....
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 55566666666666666666666666655321111 4566667777777777777777776654444
Q ss_pred CCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHH-HHHHH
Q 042941 169 PFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLR-LFDQM 234 (481)
Q Consensus 169 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~-~~~~~ 234 (481)
+.+...+..+..+|. ..|++++|...|++..+.... +...+..+..++.+.++.+++.+ ++..|
T Consensus 348 p~~~~a~~~~g~a~~-~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 SANEKGLYRRGEAQL-LMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777 777777777777777665322 34456666666666666665543 34443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00021 Score=56.36 Aligned_cols=63 Identities=17% Similarity=0.141 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 244 KVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
..|..+..+|.+.|++++|...++...+..+. +...|..+..+|...|++++|...|+...+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 44555555566666666666666665554332 4555555566666666666666666655544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00011 Score=66.91 Aligned_cols=138 Identities=11% Similarity=0.032 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHH
Q 042941 66 REYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLL 145 (481)
Q Consensus 66 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 145 (481)
..+..+...+.+.|++++|+..|++..+. . .. .. ..... +...... +.+..+|..+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~----~---~~-~~-------~~~~~-------~~~~~~~-~~~~~~~~nla 280 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY----V---EG-SR-------AAAED-------ADGAKLQ-PVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----H---HH-HH-------HHSCH-------HHHGGGH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH----h---hc-Cc-------cccCh-------HHHHHHH-HHHHHHHHHHH
Confidence 34666677777788888888888777652 0 00 00 00000 0000010 11233444455
Q ss_pred HHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHH
Q 042941 146 SALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLH 225 (481)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~ 225 (481)
.+|.+.|++++|+..+++.....+.+...+..+..+|. ..|++++|...|++..+.... +...+..+..++...++.+
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ-GLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555544333444555555555555 555666666555555544221 3344444445555555444
Q ss_pred HHH
Q 042941 226 KVL 228 (481)
Q Consensus 226 ~a~ 228 (481)
++.
T Consensus 359 ~a~ 361 (370)
T 1ihg_A 359 DKE 361 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.85 E-value=2.3e-05 Score=74.14 Aligned_cols=118 Identities=8% Similarity=-0.129 Sum_probs=65.8
Q ss_pred HHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCC
Q 042941 74 ILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKN 153 (481)
Q Consensus 74 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 153 (481)
.+.+.|++++|.+.|++..+. ++.+..++..+...+...|++++|+..+++..+.. +.+...+..+..+|...|+
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 344566666666666666654 23335666666666666666766666666666543 2245556666666666666
Q ss_pred hhhHHHHHhhccCCCCCchHhHHHHHHH--HHHhcCCHHHHHHHHH
Q 042941 154 VQDAEHLMFCNKDVFPFNTKSFNIILNG--WCNIIGSSREAERVWM 197 (481)
Q Consensus 154 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~~~~ 197 (481)
+++|++.|++.....|.+...+..+..+ +. +.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIV-KQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHH-HHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHhcccc
Confidence 6666666665433333333444444433 55 5566666666665
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.85 E-value=5.5e-05 Score=56.04 Aligned_cols=86 Identities=8% Similarity=-0.012 Sum_probs=44.7
Q ss_pred cCCHHHHHHHHHHHHhcC--CcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 042941 186 IGSSREAERVWMEMSQRG--ICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAI 263 (481)
Q Consensus 186 ~~~~~~a~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 263 (481)
.|++++|+..|++..+.+ -+.+...+..+..+|...|++++|...|++..+.. +-+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 355555556665555543 11123445555555666666666666666655543 334555555555666666666666
Q ss_pred HHHHHHHHc
Q 042941 264 SLMKSMEEK 272 (481)
Q Consensus 264 ~~~~~~~~~ 272 (481)
..|++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666655543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00028 Score=64.30 Aligned_cols=121 Identities=11% Similarity=0.045 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------------Cc-ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042941 174 SFNIILNGWCNIIGSSREAERVWMEMSQRG--------------IC-YDVVSFSCIISCYSKARNLHKVLRLFDQMKRMG 238 (481)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g--------------~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 238 (481)
.+..+...+. +.|++++|+..|++..+.- .. .+...|..+..+|.+.|++++|...++...+..
T Consensus 225 ~~~~~g~~~~-~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 225 DLKNIGNTFF-KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3556666777 7888888888887776510 11 123455666666666677777776666666653
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 042941 239 IECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEA 297 (481)
Q Consensus 239 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 297 (481)
+.+...+..+..+|...|++++|...|++..+.... +...+..+...+...++.+++
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666666666666655322 444444444444444444444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.80 E-value=2.2e-05 Score=58.25 Aligned_cols=52 Identities=8% Similarity=-0.078 Sum_probs=19.8
Q ss_pred CChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042941 79 RKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKR 131 (481)
Q Consensus 79 g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 131 (481)
|++++|+..|++..+.+.. ++.+..++..+...+...|++++|+..|++..+
T Consensus 4 g~~~~A~~~~~~al~~~~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 55 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQ-GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK 55 (117)
T ss_dssp ---CCCHHHHHHHHSSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCC-CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444443210 112233444444444444444444444444443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00011 Score=66.10 Aligned_cols=147 Identities=10% Similarity=-0.092 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHH
Q 042941 66 REYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLL 145 (481)
Q Consensus 66 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 145 (481)
..+..+...+.+.|++++|...|+..... .|+ ... +...++.+++...+. ...|..+.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~---~~~-------~~~~~~~~~~~~~l~----------~~~~~nla 237 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGD---DFM-------FQLYGKYQDMALAVK----------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCH---HHH-------HTCCHHHHHHHHHHH----------THHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hcc---chh-------hhhcccHHHHHHHHH----------HHHHHHHH
Confidence 44556666677777888888877776654 122 110 011111111111110 01444555
Q ss_pred HHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHH-HHhcCCH
Q 042941 146 SALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISC-YSKARNL 224 (481)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~-~~~~~~~ 224 (481)
.+|.+.|++++|+..+++.....+.+...+..+..+|. ..|++++|...|++..+.... +...+..+... ....+..
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~-~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKA-ELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555543333344555555555555 555666665555555443211 22233333322 1223344
Q ss_pred HHHHHHHHHHHH
Q 042941 225 HKVLRLFDQMKR 236 (481)
Q Consensus 225 ~~a~~~~~~~~~ 236 (481)
+.+..+|..|..
T Consensus 316 ~~a~~~~~~~l~ 327 (338)
T 2if4_A 316 QKQKEMYKGIFK 327 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHHhhC
Confidence 455555555543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00061 Score=53.67 Aligned_cols=97 Identities=13% Similarity=0.124 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------C---------CcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 174 SFNIILNGWCNIIGSSREAERVWMEMSQR--------G---------ICYDVVSFSCIISCYSKARNLHKVLRLFDQMKR 236 (481)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~--------g---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 236 (481)
.+......+. +.|++++|+..|...... . -+.+...|..+..+|.+.|++++|+..++...+
T Consensus 13 ~~~~~G~~~~-~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 13 ALRQKGNELF-VQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 4444555555 666666666666655443 0 011335677778888888889999888888888
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 237 MGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 237 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
.+ +.+...|..+..+|...|++++|...|++..+.
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 74 556778888888888889999999888888876
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0015 Score=63.05 Aligned_cols=169 Identities=11% Similarity=-0.027 Sum_probs=89.5
Q ss_pred hHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcC
Q 042941 82 DTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHD----------VGRAINAFYAYKRFKFAVGIEDFQGLLSALCRY 151 (481)
Q Consensus 82 ~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 151 (481)
++|++.++.+... ++....+|+.--..+...|+ +++++..++.+.+... -+..+|+.-.-++.+.
T Consensus 46 eeal~~~~~~l~~----nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 46 ESVLELTSQILGA----NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRL 120 (567)
T ss_dssp HHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHH----CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 4556666666554 33334455544444444444 5666666666655442 2445555555555555
Q ss_pred C--ChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhc-------
Q 042941 152 K--NVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIG-SSREAERVWMEMSQRGICYDVVSFSCIISCYSKA------- 221 (481)
Q Consensus 152 ~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~------- 221 (481)
+ ++++++..++++....+.+...|+.-...+. +.| .++++++.++.+.+..+. +...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~-~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAA-QAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHH-HcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 5 4455665555544444445555555555544 455 555666666555554333 444555444443332
Q ss_pred -------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 042941 222 -------RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRL 258 (481)
Q Consensus 222 -------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 258 (481)
+.++++++.+....... +-|...|.-+-..+.+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 34566777776666653 4456666665555555554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.001 Score=51.35 Aligned_cols=95 Identities=13% Similarity=-0.015 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------C-----HHHHHHHHHHHHcCCChHHHHHHHHHHHHc-------
Q 042941 211 FSCIISCYSKARNLHKVLRLFDQMKRMGIEC------D-----RKVYNAVIHALAKGRLVKDAISLMKSMEEK------- 272 (481)
Q Consensus 211 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------- 272 (481)
+......+.+.|++++|+..|+...+..... + ...|..+..++.+.|++++|+..+++..+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444555666667777777776666542110 2 227777888888888888888888887775
Q ss_pred CCCCChhhH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 273 GVAPNVVTY----NSLIKPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 273 ~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 306 (481)
.+. +...| ...-.++...|++++|+..|++..+
T Consensus 94 ~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 432 45566 7778888888999999988888754
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00023 Score=66.98 Aligned_cols=133 Identities=11% Similarity=0.022 Sum_probs=96.3
Q ss_pred HHHcCCChHHHHHHHHHHHHcC---CCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 042941 252 ALAKGRLVKDAISLMKSMEEKG---VAP----NVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIR 324 (481)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 324 (481)
.+...|++++|+.++++..+.. +.| ...+++.|...|...|++++|..++++..+-
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i----------------- 380 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG----------------- 380 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Confidence 4567899999999998876531 112 3457888999999999999999999886542
Q ss_pred chhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCC-CC-HHHHHHHHHHHHhcCCHH
Q 042941 325 TGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISE-----NGNG-PD-RSSYTALIHALFLNGKLE 397 (481)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~-~~~~~~l~~~~~~~g~~~ 397 (481)
.+.......+-...+++.|...|..+|++++|..++++..+ .|.. |+ ..+.+.+-.++...|.++
T Consensus 381 --------~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~ 452 (490)
T 3n71_A 381 --------YMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFR 452 (490)
T ss_dssp --------HHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 11111111112345788999999999999999999998765 3432 22 335667778888999999
Q ss_pred HHHHHHHHHHHC
Q 042941 398 EAHQYYMEMKEK 409 (481)
Q Consensus 398 ~A~~~~~~m~~~ 409 (481)
+|..+|.++++.
T Consensus 453 ~ae~~~~~~~~~ 464 (490)
T 3n71_A 453 QNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00017 Score=64.93 Aligned_cols=128 Identities=10% Similarity=-0.002 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHH------------------hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 174 SFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVV------------------SFSCIISCYSKARNLHKVLRLFDQMK 235 (481)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~------------------~~~~ll~~~~~~~~~~~a~~~~~~~~ 235 (481)
.+..+...+. +.|++++|...|++.... .|+.. .|..+..+|.+.|++++|...++...
T Consensus 181 ~~~~~g~~~~-~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 181 RRKMDGNSLF-KEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHTC-SSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555 667777777777665544 22221 45555555666666666666666655
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHH
Q 042941 236 RMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKP-LCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 236 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~ 306 (481)
+.. +.+...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+.+...|..|..
T Consensus 258 ~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 258 TEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 543 334555556666666666666666666655443221 22233333222 1223444555555555543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0015 Score=62.95 Aligned_cols=175 Identities=7% Similarity=-0.091 Sum_probs=130.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCC----------hhhHHHHHhhccCCCCCchHhHHHHHHHHHHhc
Q 042941 117 HDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKN----------VQDAEHLMFCNKDVFPFNTKSFNIILNGWCNII 186 (481)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 186 (481)
..-++|+..++.+...+.. +..+|+.--.++...++ +++++..++.+....|.+..+|+.-...+. +.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~-~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS-RL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-Hc
Confidence 3457889999999886532 45667665555555555 888888888876667778888888887777 78
Q ss_pred C--CHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-------
Q 042941 187 G--SSREAERVWMEMSQRGICYDVVSFSCIISCYSKAR-NLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKG------- 256 (481)
Q Consensus 187 ~--~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~------- 256 (481)
+ ++++++..++.+.+.... +..+|+.-..++.+.| .++++++.++.+.+.. +-|...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 8 779999999999887655 7778887777777888 8889999988888775 45778887776666552
Q ss_pred -------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 042941 257 -------RLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDE 296 (481)
Q Consensus 257 -------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 296 (481)
+.++++.+.+++.....+. +...|+..-..+.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 4568888888888876554 67777777666666666433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00036 Score=65.68 Aligned_cols=123 Identities=8% Similarity=-0.045 Sum_probs=90.8
Q ss_pred hcCCHHHHHHHHHHHHhc-----CCc-c-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-CHHHHHHHH
Q 042941 185 IIGSSREAERVWMEMSQR-----GIC-Y-DVVSFSCIISCYSKARNLHKVLRLFDQMKRM-----G-IEC-DRKVYNAVI 250 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~-----g~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~li 250 (481)
..|++++|+.++++.... |.. | ...+++.|..+|...|++++|..++++.... | ..| ...+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 689999999999876543 211 2 2457889999999999999999999887643 2 112 345788899
Q ss_pred HHHHcCCChHHHHHHHHHHHHc-----CCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 251 HALAKGRLVKDAISLMKSMEEK-----GVA-P-NVVTYNSLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
..|...|++++|..++++..+. |.. | ...+.+.+-.++...+.+++|+.+|..+++.
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887542 332 1 1234456667777888999999999988763
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0014 Score=50.62 Aligned_cols=96 Identities=14% Similarity=0.055 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc------c-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------
Q 042941 175 FNIILNGWCNIIGSSREAERVWMEMSQRGICY------D-----VVSFSCIISCYSKARNLHKVLRLFDQMKRM------ 237 (481)
Q Consensus 175 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~------~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------ 237 (481)
+......+. +.|++++|+..|++..+..... + ...|..+..++.+.|++++|+..++...+.
T Consensus 14 ~~~~G~~l~-~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 14 ALSDAQRQL-VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 444555566 7788888888888776653220 1 237888888899999999999999888875
Q ss_pred -CCCCCHHHH----HHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 238 -GIECDRKVY----NAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 238 -~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
. +-+...| .....++...|++++|+..|++..+.
T Consensus 93 ~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 93 LN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4 2345677 88888999999999999999988754
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0047 Score=47.00 Aligned_cols=112 Identities=7% Similarity=0.004 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChHHH
Q 042941 187 GSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAK----GRLVKDA 262 (481)
Q Consensus 187 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a 262 (481)
+++++|...|++..+.|. |+.. +...|...+.+++|.+.|+...+.| +...+..+...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 456777888877777762 2322 5556666667777888888777765 56667777777776 6788888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 042941 263 ISLMKSMEEKGVAPNVVTYNSLIKPLCK----ARKLDEARQAFDEMLQRGI 309 (481)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~ 309 (481)
...|++..+.| +...+..|-..|.. .+++++|..+|+...+.|.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 88888887763 55666677777777 7788888888888777653
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0007 Score=49.10 Aligned_cols=65 Identities=14% Similarity=-0.001 Sum_probs=43.0
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 207 DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 207 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
+...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34455566666677777777777777766653 345666666777777777777777777776664
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.002 Score=44.52 Aligned_cols=62 Identities=11% Similarity=0.167 Sum_probs=33.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 210 SFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 210 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
.+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|...|++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44444555555555555555555555442 234445555555555555555555555555544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0014 Score=45.29 Aligned_cols=79 Identities=15% Similarity=0.053 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHH
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGL 144 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 144 (481)
...+..+...+...|++++|...|++..+. ++.+..++..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l 83 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 455666666777777777777777776654 22235666667777777777777777777766543 2234444444
Q ss_pred HHHH
Q 042941 145 LSAL 148 (481)
Q Consensus 145 l~~~ 148 (481)
..++
T Consensus 84 ~~~~ 87 (91)
T 1na3_A 84 GNAK 87 (91)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0015 Score=46.50 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 342 QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 342 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
+-+...+..+...|...|++++|...|++..+.... +...|..+..+|...|++++|...|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 346778888999999999999999999999886533 5678999999999999999999999998754
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0028 Score=46.29 Aligned_cols=78 Identities=17% Similarity=0.133 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 227 VLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 227 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 306 (481)
+...|+...+.. +.+...+..+...|...|++++|...|++..+.... +...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444432 234445555555555555555555555555554322 344555555555555555555555555443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0053 Score=46.69 Aligned_cols=111 Identities=12% Similarity=0.033 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHh----cCCHHHH
Q 042941 117 HDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNI----IGSSREA 192 (481)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~a 192 (481)
+++++|+..|++..+.| .|... +...|...+.+++|.++|++.... .+...+..+...|. . .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~-~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYE-NGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHH-cCCCCCccHHHH
Confidence 45667777777766655 22322 445555555555566666553221 24444555555554 4 4555555
Q ss_pred HHHHHHHHhcCCcccHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 042941 193 ERVWMEMSQRGICYDVVSFSCIISCYSK----ARNLHKVLRLFDQMKRMG 238 (481)
Q Consensus 193 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 238 (481)
...|++..+.| +...+..|...|.. .+++++|...|+...+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 55555555443 33344444444544 455555555555555544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0023 Score=46.85 Aligned_cols=60 Identities=3% Similarity=-0.160 Sum_probs=22.5
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 042941 172 TKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQ 233 (481)
Q Consensus 172 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 233 (481)
...+..+...+. ..|++++|...|+........ +...|..+..++...|++++|...|+.
T Consensus 19 ~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 19 MLLRFTLGKTYA-EHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333333333333 344444444444433332211 222333333334444444444444333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00088 Score=47.72 Aligned_cols=66 Identities=15% Similarity=0.024 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRF 132 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 132 (481)
.+...+..+...+.+.|++++|+..|+...+. ++....+|..+..++...|++++|+..|++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVET----DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677888888888888888888888888776 3334667888888888888888888888877653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0016 Score=50.20 Aligned_cols=70 Identities=6% Similarity=-0.067 Sum_probs=33.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042941 185 IIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNL----------HKVLRLFDQMKRMGIECDRKVYNAVIHALA 254 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (481)
+.+.+++|.+.++...+.... +...|..+..++...+++ ++|+..|++..+.. +-+..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 445566666666666555333 455555555555555443 24444444444432 223334444444444
Q ss_pred cC
Q 042941 255 KG 256 (481)
Q Consensus 255 ~~ 256 (481)
..
T Consensus 92 ~l 93 (158)
T 1zu2_A 92 SF 93 (158)
T ss_dssp HH
T ss_pred Hh
Confidence 33
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.002 Score=49.62 Aligned_cols=105 Identities=10% Similarity=0.053 Sum_probs=60.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh----------HHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 042941 220 KARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLV----------KDAISLMKSMEEKGVAPNVVTYNSLIKPLC 289 (481)
Q Consensus 220 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 289 (481)
+.+.+++|.+.++...+.. +.+...|..+..++...+++ ++|+..|++..+..+. +...|..+-.+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 3445666666666666654 44556666566666555443 4666666666665443 4555666666665
Q ss_pred hcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhH
Q 042941 290 KAR-----------KLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEE 328 (481)
Q Consensus 290 ~~g-----------~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 328 (481)
..| ++++|...|++..+. .|+...|...+....+..+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~~ka~e 139 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTAKAPQ 139 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHhCHh
Confidence 543 566666666666654 3555555555555444433
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.061 Score=47.84 Aligned_cols=78 Identities=14% Similarity=0.069 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 042941 342 QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELL 421 (481)
Q Consensus 342 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 421 (481)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++... +.|...||...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHH
Confidence 5678888888877888899999999999999965 7888888889999999999999999999887 56888887655
Q ss_pred HH
Q 042941 422 QD 423 (481)
Q Consensus 422 ~~ 423 (481)
-.
T Consensus 350 ~~ 351 (372)
T 3ly7_A 350 EN 351 (372)
T ss_dssp HH
T ss_pred hC
Confidence 44
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.012 Score=41.31 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=50.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 351 LIKKFSRWRQFGNVFKVWNEISENGNGPDRS-SYTALIHALFLNGKLEEAHQYYMEMKEKQ 410 (481)
Q Consensus 351 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 410 (481)
....+...|++++|...+++..+... .+.. .|..+..+|...|++++|...|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 45567889999999999999988643 3567 88899999999999999999999998753
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.12 Score=37.99 Aligned_cols=140 Identities=16% Similarity=0.100 Sum_probs=88.0
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHH
Q 042941 254 AKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLL 333 (481)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~ 333 (481)
.-.|..++..++..+..+. .+..-||.+|.-....-+-+-..++++.+-+- -|. +.|.....+ .
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi-------s~C~NlKrV---i 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL-------DKCQNLKSV---V 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG-------GGCSCTHHH---H
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc-------HhhhcHHHH---H
Confidence 3456777777777776654 35556666666665555555555555544221 111 011111111 1
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042941 334 ESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLL 412 (481)
Q Consensus 334 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 412 (481)
.-.... ..+...+...+.....+|+-++..+++..+... .+|++...-.+..||.+.|+..+|.+++++.-++|++
T Consensus 82 ~C~~~~--n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVIN--NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHT--TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHh--cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 111111 234556777788888899999999998886542 4577888888899999999999999999999888864
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.052 Score=37.69 Aligned_cols=68 Identities=7% Similarity=0.079 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 342 QPTNDTYIMLIKKFSRWRQ---FGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQ 410 (481)
Q Consensus 342 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 410 (481)
+.+...+..+..++...++ .++|..++++..+... -+......+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4567778888887765555 7999999999998654 367788888999999999999999999999863
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.14 Score=45.47 Aligned_cols=73 Identities=5% Similarity=-0.045 Sum_probs=43.9
Q ss_pred CCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 042941 169 PFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVY 246 (481)
Q Consensus 169 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 246 (481)
+.+...+..+...+. ..|++++|...+++....+ |+...|..+...+.-.|++++|.+.|.+.... .|...+|
T Consensus 274 ~~~a~~~~alal~~l-~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSAL-VKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CcCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 445555655555555 5567777777776666654 45555555566666667777776666666654 3444444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.012 Score=54.51 Aligned_cols=86 Identities=5% Similarity=-0.104 Sum_probs=53.2
Q ss_pred cCCHHHHHHHHHHHHhc-----CCc-cc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-CHHHHHHHHH
Q 042941 186 IGSSREAERVWMEMSQR-----GIC-YD-VVSFSCIISCYSKARNLHKVLRLFDQMKRM-----G-IEC-DRKVYNAVIH 251 (481)
Q Consensus 186 ~~~~~~a~~~~~~~~~~-----g~~-~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~li~ 251 (481)
.|++++|+.++++.... |.. |+ ..+++.+..+|...|++++|..++++.... | -.| ...+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777777765442 111 22 346777777777777777777777766532 2 112 2345667777
Q ss_pred HHHcCCChHHHHHHHHHHHH
Q 042941 252 ALAKGRLVKDAISLMKSMEE 271 (481)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~ 271 (481)
.|...|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77777777777777776543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0046 Score=43.60 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=44.5
Q ss_pred HHHHHhccCChhHHHHHHHHHhcCCCCCCcccHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 042941 71 MIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQ-TLLILIRRYCAVHDVGRAINAFYAYKRFK 133 (481)
Q Consensus 71 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 133 (481)
....+.+.|++++|...|+...+. ++.+.. .+..+...+...|++++|+..|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT----EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH----CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345666778888888888888775 333466 77788888888888888888888887754
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.024 Score=39.40 Aligned_cols=67 Identities=10% Similarity=0.050 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHhccCC---hhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 042941 63 HSTREYHTMIAILGKVRK---FDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFK 133 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 133 (481)
.|...+..+..++...++ .++|..++++..+. |+.++.+...+...+...|++++|+..|+.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~----dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL----EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 566777777777754443 67888888888776 55567788888888888888888888888887654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.023 Score=52.62 Aligned_cols=85 Identities=14% Similarity=0.072 Sum_probs=42.4
Q ss_pred hcCCHHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-----CC-CC-ChhhHHHHH
Q 042941 220 KARNLHKVLRLFDQMKRMG---IEC----DRKVYNAVIHALAKGRLVKDAISLMKSMEEK-----GV-AP-NVVTYNSLI 285 (481)
Q Consensus 220 ~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~li 285 (481)
+.|++++|..++++..+.. +.| ...+++.+...|...|++++|+.++++..+. |. .| ...+++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 3455556655555554321 111 1234555555566666666666665554321 11 11 123455555
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 042941 286 KPLCKARKLDEARQAFDEM 304 (481)
Q Consensus 286 ~~~~~~g~~~~a~~~~~~m 304 (481)
..|...|++++|..++++.
T Consensus 379 ~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHH
Confidence 5666666666666666554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.19 Score=50.96 Aligned_cols=108 Identities=12% Similarity=0.018 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHhhcCHHHHHH-HHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHH
Q 042941 30 SSELVSEVLSWVRNDWEAAFT-FFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLI 108 (481)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~ 108 (481)
+...+..-.....++.+.|.+ ++..+ ++......++..+.+.|..+.|..+.+ + +. .
T Consensus 600 ~~~~~~~~~~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~---~~---~ 657 (814)
T 3mkq_A 600 SLEVLEFQTLTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISP---------D---QD---Q 657 (814)
T ss_dssp CHHHHHHHHHHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------C---HH---H
T ss_pred CcHHHHHhHHHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCC---------C---cc---h
Confidence 333333333333566666655 33221 212233666677777777777766552 1 10 0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhcc
Q 042941 109 LIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNK 165 (481)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 165 (481)
-.......|+++.|.++.+.+ .+...|..+...+.+.++++.|++.|.++.
T Consensus 658 ~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 658 KFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred heehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 122334567777777765332 355677777777777777777777776543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.015 Score=53.83 Aligned_cols=87 Identities=7% Similarity=-0.001 Sum_probs=68.0
Q ss_pred hcCCHHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-----CC-CC-ChhhHHHHH
Q 042941 220 KARNLHKVLRLFDQMKRMG---IEC----DRKVYNAVIHALAKGRLVKDAISLMKSMEEK-----GV-AP-NVVTYNSLI 285 (481)
Q Consensus 220 ~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~li 285 (481)
..|++++|..++++..+.. +.| ...+++.+..+|...|++++|..++++..+. |. .| ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4678999999998877531 112 2467899999999999999999999987643 32 12 245688899
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 042941 286 KPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 286 ~~~~~~g~~~~a~~~~~~m~~ 306 (481)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.25 Score=36.32 Aligned_cols=63 Identities=16% Similarity=0.128 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC
Q 042941 211 FSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGV 274 (481)
Q Consensus 211 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 274 (481)
+...+..+..+|+-++..+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344455555555555555555554332 244555555555555555555555555555555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.022 Score=52.71 Aligned_cols=93 Identities=5% Similarity=-0.073 Sum_probs=65.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC---Ccc----cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-CHH
Q 042941 179 LNGWCNIIGSSREAERVWMEMSQRG---ICY----DVVSFSCIISCYSKARNLHKVLRLFDQMKRM-----G-IEC-DRK 244 (481)
Q Consensus 179 ~~~~~~~~~~~~~a~~~~~~~~~~g---~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~ 244 (481)
+..+. ..|++++|+.++++..... +.| ...+++.+..+|...|++++|+.++++.... | ..| ...
T Consensus 294 ie~~~-~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 294 IEELK-AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHH-hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 44455 6788888888888776531 111 2457788888888888888888888877642 2 112 235
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 245 VYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
+++.|...|...|++++|..++++..+.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 6778888888888888888888887764
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.14 Score=36.32 Aligned_cols=74 Identities=18% Similarity=0.053 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 042941 343 PTNDTYIMLIKKFSRWRQFGNVFKVWNEISENG------NGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPK 416 (481)
Q Consensus 343 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 416 (481)
.+..-+..+...+.+.|+++.|...++...+.- -.+....+..+..++.+.|++++|..++++... +.|+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~ 80 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence 455566678889999999999999999876631 124567899999999999999999999999987 467664
Q ss_pred HH
Q 042941 417 TD 418 (481)
Q Consensus 417 ~~ 418 (481)
..
T Consensus 81 ~~ 82 (104)
T 2v5f_A 81 RA 82 (104)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.13 Score=39.24 Aligned_cols=86 Identities=15% Similarity=0.163 Sum_probs=63.5
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 333 LESMRKMGCQPTNDTYIMLIKKFSRWR---QFGNVFKVWNEISENGNGP--DRSSYTALIHALFLNGKLEEAHQYYMEMK 407 (481)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 407 (481)
+....+.+ +++..+.-.+..++++.+ +++++..+++...+.+ .| ....+-.+.-+|.+.|++++|.++++.+.
T Consensus 21 y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 21 FQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp HHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33333444 467778778888999988 6779999999998864 23 34556667778999999999999999998
Q ss_pred HCCCCCCHhHHHHHH
Q 042941 408 EKQLLPEPKTDELLQ 422 (481)
Q Consensus 408 ~~~~~p~~~~~~~l~ 422 (481)
+ +.|+..--..+.
T Consensus 99 ~--ieP~n~QA~~Lk 111 (152)
T 1pc2_A 99 Q--TEPQNNQAKELE 111 (152)
T ss_dssp H--HCTTCHHHHHHH
T ss_pred h--cCCCCHHHHHHH
Confidence 7 567655444433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.58 Score=36.59 Aligned_cols=99 Identities=10% Similarity=0.089 Sum_probs=49.2
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHH
Q 042941 113 YCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREA 192 (481)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 192 (481)
....|+++.|.++.+.+ .+...|..|.+.....|+++-|++.|.+..+ +..+.-.|. ..|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~-~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYL-VTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHH-HHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHH-HhCCHHHH
Confidence 34456666666665543 2455566666666666666666666655432 223333333 44555444
Q ss_pred HHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHH
Q 042941 193 ERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFD 232 (481)
Q Consensus 193 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 232 (481)
.++-+.....| -++.....+.-.|+++++.++|.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 44433333222 12333344445556666555553
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.27 E-value=0.23 Score=35.15 Aligned_cols=63 Identities=13% Similarity=-0.045 Sum_probs=32.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 210 SFSCIISCYSKARNLHKVLRLFDQMKRMG------IECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 210 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
-+..+...+.+.|++..|...|+...+.- -.+....+..+..++.+.|+++.|...++++.+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 33445555555555555555555544320 0123344555555555555555555555555543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.27 E-value=0.29 Score=49.56 Aligned_cols=45 Identities=7% Similarity=-0.073 Sum_probs=21.7
Q ss_pred HcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 149 CRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEM 199 (481)
Q Consensus 149 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 199 (481)
...|+++.|.++.+.+ .+...|..+...+. +.++++.|++.|..+
T Consensus 663 l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al-~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE-----SAEMKWRALGDASL-QRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHH-HcCCHHHHHHHHHHc
Confidence 3445555555544332 13344555555555 555555555555444
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.64 E-value=1.2 Score=34.77 Aligned_cols=46 Identities=13% Similarity=0.095 Sum_probs=20.7
Q ss_pred HHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 148 LCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEM 199 (481)
Q Consensus 148 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 199 (481)
....|+++.|.++.+.+ .+...|..+..... ..|+++-|+..|...
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL-~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEAL-AQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHH-HTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHH-HcCChHHHHHHHHHh
Confidence 33444444444444333 13344444444444 444444444444443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=1.9 Score=36.82 Aligned_cols=84 Identities=10% Similarity=0.015 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcCCccc---HHhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CChH
Q 042941 190 REAERVWMEMSQRGICYD---VVSFSCIISCYSK-----ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKG-RLVK 260 (481)
Q Consensus 190 ~~a~~~~~~~~~~g~~~~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~ 260 (481)
..|...+++..+. .|+ ...|..+...|.+ -|+.++|.+.|++..+.+..-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3444444444443 222 3345555555555 256666666666655543111244555555555553 5566
Q ss_pred HHHHHHHHHHHcCCC
Q 042941 261 DAISLMKSMEEKGVA 275 (481)
Q Consensus 261 ~a~~~~~~~~~~~~~ 275 (481)
.+.+.+++.....+.
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 666666666555433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.34 E-value=0.35 Score=36.81 Aligned_cols=65 Identities=8% Similarity=-0.028 Sum_probs=27.9
Q ss_pred chHhHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCcc--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042941 171 NTKSFNIILNGWCNIIG---SSREAERVWMEMSQRGICY--DVVSFSCIISCYSKARNLHKVLRLFDQMKRM 237 (481)
Q Consensus 171 ~~~~~~~l~~~~~~~~~---~~~~a~~~~~~~~~~g~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 237 (481)
+..+...+..+++ +.+ +.++++.+++...+.. .| ....+-.+.-+|.+.|++++|.+.++.+.+.
T Consensus 31 ~~~~~F~ya~~Lv-~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 31 SKSTQFEYAWCLV-RSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3444444444444 444 3334555554444432 11 1222333334445555555555555555543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.33 E-value=0.46 Score=35.78 Aligned_cols=53 Identities=13% Similarity=0.072 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC
Q 042941 222 RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVA 275 (481)
Q Consensus 222 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (481)
++.++|.++|+.+.+.+-.. ...|......-.+.|++..|.+++......+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 45555555555554432222 444544555555555666666666555555444
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.62 Score=39.77 Aligned_cols=94 Identities=14% Similarity=0.159 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CCH
Q 042941 224 LHKVLRLFDQMKRMGIECD---RKVYNAVIHALAK-----GRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKA-RKL 294 (481)
Q Consensus 224 ~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 294 (481)
...|...+++..+. .|+ ...|..+...|.+ .|+.++|.+.|++..+.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 46777778888776 455 5688999999999 499999999999999976543477777778888884 999
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHH
Q 042941 295 DEARQAFDEMLQRGIS--PTIRTYHAF 319 (481)
Q Consensus 295 ~~a~~~~~~m~~~~~~--p~~~~~~~l 319 (481)
+++.+.+++....... |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999999998766 665544443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.55 E-value=0.63 Score=45.96 Aligned_cols=91 Identities=8% Similarity=-0.070 Sum_probs=65.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHC-
Q 042941 340 GCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNG---------KLEEAHQYYMEMKEK- 409 (481)
Q Consensus 340 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~m~~~- 409 (481)
..+.+..=|..|.....|.+++++|.+.|+..... +.++..+..|+..|.+.+ +.+..+.+.-++..-
T Consensus 608 ~~kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~~w~ 685 (754)
T 4gns_B 608 DEKHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKISYD 685 (754)
T ss_dssp SCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHHHh
Confidence 34566777899999999999999999999998875 468899999999999877 677777766666432
Q ss_pred ---CCCCCHhHHHHHHHHHhhhhHHH
Q 042941 410 ---QLLPEPKTDELLQDWSYNKQFVE 432 (481)
Q Consensus 410 ---~~~p~~~~~~~l~~~~~~~~~~~ 432 (481)
-...++.....+..++.+.|...
T Consensus 686 ~RwY~efs~~l~~~l~kLi~~~G~~k 711 (754)
T 4gns_B 686 CRYYNYCQIFNLQLLEKLCNELGTHI 711 (754)
T ss_dssp HHTTBCCCHHHHHHHHHHHHHHCHHH
T ss_pred hhcccccCHHHHHHHHHHHHHhChHH
Confidence 12344555555656655555544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.61 Score=42.37 Aligned_cols=79 Identities=15% Similarity=0.113 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhHHHHH
Q 042941 347 TYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKE-----KQLLPEPKTDELL 421 (481)
Q Consensus 347 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~l 421 (481)
....++..+...|++++|...+..+.... +.+...|..+|.++.+.|+..+|++.|++... .|+.|++.+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34557778889999999999999887753 34788999999999999999999999998654 3999999987766
Q ss_pred HHHHh
Q 042941 422 QDWSY 426 (481)
Q Consensus 422 ~~~~~ 426 (481)
-..+.
T Consensus 252 ~~il~ 256 (388)
T 2ff4_A 252 ERILR 256 (388)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 55543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.37 E-value=4.9 Score=37.17 Aligned_cols=188 Identities=11% Similarity=0.092 Sum_probs=91.7
Q ss_pred cCHHHHHHHHHHhhh----CCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH----
Q 042941 43 NDWEAAFTFFLWAGK----QSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYC---- 114 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~---- 114 (481)
++++.|++.+..+.+ ......+......++..|...|+++...+.+..+....-.. ..+...+++.+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql----k~ai~~~V~~~~~~l~ 105 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL----KLSIQYMIQKVMEYLK 105 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS----HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHh
Confidence 456666665544432 23345567888889999999999998888887766542222 223333333222
Q ss_pred hcCCHHH--HHHHHHHHhh--cC-CCC---CHHhHHHHHHHHHcCCChhhHHHHHhhccC----CCC--CchHhHHHHHH
Q 042941 115 AVHDVGR--AINAFYAYKR--FK-FAV---GIEDFQGLLSALCRYKNVQDAEHLMFCNKD----VFP--FNTKSFNIILN 180 (481)
Q Consensus 115 ~~~~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~--~~~~~~~~l~~ 180 (481)
.....+. -+.+.+.... .| +.. .......|...+...|++.+|..++..+.. ... .-...+...++
T Consensus 106 ~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 106 SSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp HHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 2222221 1111111110 00 111 111223455666666666666666655321 000 01234445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHh----cCCcccH--HhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 181 GWCNIIGSSREAERVWMEMSQ----RGICYDV--VSFSCIISCYSKARNLHKVLRLFDQMK 235 (481)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~~~~----~g~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~ 235 (481)
.|. ..+++..|..++..... ....|+. .-+...+..+...+++.+|...|.++.
T Consensus 186 l~l-~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 186 LSI-LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHH-HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHH-HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 555 66666666666655432 1111221 233444555555666666655555443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.28 E-value=0.92 Score=34.19 Aligned_cols=104 Identities=12% Similarity=0.102 Sum_probs=64.3
Q ss_pred cHHhHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCCHHH-HHHHHH------HHHcCCChHHHHHHHHHHHHcC
Q 042941 207 DVVSFSCIISCYSKARNL------HKVLRLFDQMKRMGIECDRKV-YNAVIH------ALAKGRLVKDAISLMKSMEEKG 273 (481)
Q Consensus 207 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~li~------~~~~~g~~~~a~~~~~~~~~~~ 273 (481)
|..+|-..+...-+.|++ ++..++|++.... ++|+... +...+. .+...+++++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 334444444444444555 5566666665554 4554211 111111 1123478999999999998764
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 042941 274 VAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPT 312 (481)
Q Consensus 274 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 312 (481)
-+. ...|-...+--.+.|+...|.+++...+..+..|.
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 444 55666666666789999999999999999876643
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=92.99 E-value=0.37 Score=33.21 Aligned_cols=61 Identities=10% Similarity=0.078 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHH
Q 042941 120 GRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILN 180 (481)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 180 (481)
=++.+.++.+...++.|++....+.+++|-+.+++..|.++|+.++..+.....+|..+++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 3444555555555555666666666666666666666666665554443333334444443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.74 E-value=1.5 Score=32.07 Aligned_cols=78 Identities=15% Similarity=0.108 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhH---HHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 042941 342 QPTNDTYIMLIKKFSRWRQFGN---VFKVWNEISENGNG-PDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417 (481)
Q Consensus 342 ~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 417 (481)
.++..+--.+..++.+..+... ++.+++.+.+.+.+ -.....-.|.-++.+.|++++|.++++.+.+ +.|+..-
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~--~eP~n~Q 109 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQNNQ 109 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCCHH
Confidence 3777777778888888887666 88888888776411 1333455567789999999999999999987 5676544
Q ss_pred HHHH
Q 042941 418 DELL 421 (481)
Q Consensus 418 ~~~l 421 (481)
-..|
T Consensus 110 A~~L 113 (126)
T 1nzn_A 110 AKEL 113 (126)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.71 E-value=9.5 Score=38.70 Aligned_cols=118 Identities=8% Similarity=-0.045 Sum_probs=57.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCcccHHhHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHcCCChH
Q 042941 185 IIGSSREAERVWMEMSQRGICYDVVSFS--CIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYN--AVIHALAKGRLVK 260 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~ 260 (481)
-.|+.+....++..+.+.. +..... .+.-++...|+.+.+..+++.+.... .|....-. ++.-+|+..|+..
T Consensus 502 GTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 502 GTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp TCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHH
T ss_pred ccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHH
Confidence 4566666666666555431 222222 22233445666666666666666532 22222211 2334456666766
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 261 DAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
...+++..+.+.. ..++.-...+.-++...|+.+.+.++++.+.+.
T Consensus 578 aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~ 623 (963)
T 4ady_A 578 AVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS 623 (963)
T ss_dssp HHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc
Confidence 6666777666541 112222222222444456666666666555543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=91.93 E-value=2.4e-05 Score=70.83 Aligned_cols=223 Identities=9% Similarity=0.035 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHH
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGL 144 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 144 (481)
+.+|..+..+....+++.+|++-|-+.. | +..|..+|.+..+.|.+++.+..+...++..-.|... +.|
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA~------D---ps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID--teL 122 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKAD------D---PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE--TEL 122 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCCS------C---CCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT--HHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhCC------C---hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH--HHH
Confidence 4466667777766666666655442211 2 3456667777777777777777666665543333333 367
Q ss_pred HHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCH
Q 042941 145 LSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNL 224 (481)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~ 224 (481)
+.+|++.++..+-++++. .|+..-...+..-+. ..|.++.|.-+|..+. -|..|...+.+.|++
T Consensus 123 i~ayAk~~rL~elEefl~------~~N~A~iq~VGDrcf-~e~lYeAAKilys~is---------N~akLAstLV~L~~y 186 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCY-DEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEY 186 (624)
T ss_dssp HHHHHTSCSSSTTTSTTS------CCSSSCTHHHHHHHH-HSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGG
T ss_pred HHHHHhhCcHHHHHHHHc------CCCcccHHHHHHHHH-HccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHH
Confidence 777777776655444331 244444455555555 5666665555553322 233344445556665
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 225 HKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEM 304 (481)
Q Consensus 225 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 304 (481)
..|.+.- ++ .-++.||..+..+|...+.+..|.-.--.+.-. ..-...++..|-..|.+++-+.+++.-
T Consensus 187 q~AVdaA---rK---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 187 QAAVDGA---RK---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp GSSTTTT---TT---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHH---Hh---cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5554322 22 236778888888888888888776665554432 222334666778888888888888876
Q ss_pred HHCCCCCCHHHHHHHHHHHhch
Q 042941 305 LQRGISPTIRTYHAFLDIIRTG 326 (481)
Q Consensus 305 ~~~~~~p~~~~~~~li~~~~~~ 326 (481)
... -....-.|+-|--.|++.
T Consensus 256 lgl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 256 LGL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp TTS-TTCCHHHHHHHHHHHHSS
T ss_pred hCC-CchhHHHHHHHHHHHHhc
Confidence 532 123455566555555553
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.77 E-value=0.62 Score=42.33 Aligned_cols=57 Identities=12% Similarity=-0.090 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhh
Q 042941 106 LLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFC 163 (481)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 163 (481)
...++..+...|++++++..+..+.... +.+...+..+|.++.+.|+..+|++.|+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~ 230 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRR 230 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3334444455555555555555554432 22444555555555555555555555544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.01 E-value=1.8 Score=42.74 Aligned_cols=120 Identities=12% Similarity=0.105 Sum_probs=71.9
Q ss_pred hcCC-HHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHc------CCCC-CHH----------H
Q 042941 185 IIGS-SREAERVWMEMSQRGICYDVVSFSCIISCYSKARN-LHKVLRLFDQMKRM------GIEC-DRK----------V 245 (481)
Q Consensus 185 ~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~~~----------~ 245 (481)
..++ .+.|..+++.+.......+......++..+...++ --+|.+++.+..+. ..++ +.. .
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 3444 57788888888776333222222233333333322 22444444443321 1111 111 1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 246 YNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEML 305 (481)
Q Consensus 246 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 305 (481)
...=...|...|+++.|+.+-++.....+. +-.+|..|..+|...|+++.|+-.+..+.
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 112234466789999999999988876433 67889999999999999999998888773
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=90.38 E-value=0.91 Score=33.23 Aligned_cols=59 Identities=10% Similarity=0.100 Sum_probs=28.8
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHH
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILN 180 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 180 (481)
..+-++.+...++.|++......+++|-+.+++..|.++|+.++....+...+|..+++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 33444444444555555555555555555555555555555544433333333444433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.20 E-value=1.4 Score=32.14 Aligned_cols=20 Identities=5% Similarity=0.099 Sum_probs=8.7
Q ss_pred HHHcCCChHHHHHHHHHHHH
Q 042941 252 ALAKGRLVKDAISLMKSMEE 271 (481)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~ 271 (481)
++.+.|++++|.+.++.+.+
T Consensus 83 g~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 34444444444444444443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.52 E-value=12 Score=39.44 Aligned_cols=81 Identities=7% Similarity=0.013 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 042941 211 FSCIISCYSKARNLHKVLRLFDQMKRMGIECDR----KVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIK 286 (481)
Q Consensus 211 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 286 (481)
|..++..+-+.+.++.+.++-....+...+.+. ..|..+.+.+...|++++|...+-.+.....+ ......++.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence 556667777777777777766665553211111 24666777777777777777777776654332 344555666
Q ss_pred HHHhcCC
Q 042941 287 PLCKARK 293 (481)
Q Consensus 287 ~~~~~g~ 293 (481)
..|..|.
T Consensus 980 ~lce~~~ 986 (1139)
T 4fhn_B 980 QLTKQGK 986 (1139)
T ss_dssp HHHHHCC
T ss_pred HHHhCCC
Confidence 5555543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.97 E-value=4.3 Score=28.09 Aligned_cols=64 Identities=14% Similarity=0.007 Sum_probs=47.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 042941 360 QFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDW 424 (481)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 424 (481)
+.-+..+-++.+...++.|++.+..+.+.+|.|.+++..|.++++-.+.+ +.+...+|..++.-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHH
Confidence 45567777777777788888888888888888888888888888877765 33334556655543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=88.58 E-value=5.8 Score=29.13 Aligned_cols=64 Identities=14% Similarity=0.007 Sum_probs=49.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 042941 360 QFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDW 424 (481)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 424 (481)
+.-+..+-++.+...++.|++.+....+.+|.+.+++..|.++|+-.+.+ +.+...+|..++.-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 44566777777777888899999999999999999999999999888776 34445567666554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.19 E-value=4.9 Score=42.43 Aligned_cols=129 Identities=11% Similarity=0.062 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc--cc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 042941 174 SFNIILNGWCNIIGSSREAERVWMEMSQRGIC--YD--VVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAV 249 (481)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~--~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 249 (481)
-|..++..+- +.+.++.+.++-....+.... ++ ...|..+.+.+...|++++|...+..+.....+ ......+
T Consensus 901 YY~hv~~LFe-~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~L 977 (1139)
T 4fhn_B 901 YYLHLSKKLF-EESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHH-HTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHH
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHH
Confidence 3455555555 566666666555544432111 11 124556666666666666666666655544322 2334444
Q ss_pred HHHHHcC------------CChHHHHHHHHHHHH-c-CCCCChhhHHHHHHHHHhcCCHHHHHHH-HHHHH
Q 042941 250 IHALAKG------------RLVKDAISLMKSMEE-K-GVAPNVVTYNSLIKPLCKARKLDEARQA-FDEML 305 (481)
Q Consensus 250 i~~~~~~------------g~~~~a~~~~~~~~~-~-~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~m~ 305 (481)
+...+.. |..++..+++...-. . .+.....-|..|-.-+...|++..|-.+ |+.+.
T Consensus 978 V~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 978 VNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 4444333 444555555543221 1 1111123355555555667777766554 44443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.39 E-value=7.4 Score=29.01 Aligned_cols=82 Identities=15% Similarity=0.073 Sum_probs=58.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 042941 340 GCQPTNDTYIMLIKKFSRWRQ---FGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPK 416 (481)
Q Consensus 340 ~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 416 (481)
+-.|+..+--.+..++.+..+ ..+++.+++.+.+.+..-.....-.|.-++.+.|++++|.++.+.+.+ +.|+..
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~ 111 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 111 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCH
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 335777776667777877765 456888888888754332344555677799999999999999999987 578765
Q ss_pred HHHHHHH
Q 042941 417 TDELLQD 423 (481)
Q Consensus 417 ~~~~l~~ 423 (481)
--..|-.
T Consensus 112 QA~~Lk~ 118 (144)
T 1y8m_A 112 QVGALKS 118 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444433
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=84.86 E-value=9.7 Score=27.98 Aligned_cols=83 Identities=14% Similarity=0.068 Sum_probs=59.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 042941 340 GCQPTNDTYIMLIKKFSRWRQ---FGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPK 416 (481)
Q Consensus 340 ~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 416 (481)
+-.|+..+--.+..++.+..+ ...++.+++.+.+.+..-....+-.|.-++.+.|++++|.++.+.+.+ +.|+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 335676666667777777765 456888888888765322355666778899999999999999999986 578776
Q ss_pred HHHHHHHH
Q 042941 417 TDELLQDW 424 (481)
Q Consensus 417 ~~~~l~~~ 424 (481)
--..|-..
T Consensus 113 QA~~Lk~~ 120 (134)
T 3o48_A 113 QVGALKSM 120 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.03 E-value=15 Score=30.93 Aligned_cols=120 Identities=12% Similarity=0.028 Sum_probs=71.9
Q ss_pred HHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CCHHhHHHHHHHHHc
Q 042941 73 AILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFA--VGIEDFQGLLSALCR 150 (481)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~ 150 (481)
..+.+.|++++|++....-++. +|.+...-..++..+|-.|+++.|..-++...+.... |....|..+|.+-..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~----~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~ 80 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA----SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA 80 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh----CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHH
Confidence 4567889999999988888776 5555888888999999999999999988888765422 223344455443221
Q ss_pred CCChhhHHHHHhh--ccCCCCCchHhHHHHHHHHH-HhcCCHHHHHHHHHHHHhc
Q 042941 151 YKNVQDAEHLMFC--NKDVFPFNTKSFNIILNGWC-NIIGSSREAERVWMEMSQR 202 (481)
Q Consensus 151 ~~~~~~a~~~~~~--~~~~~~~~~~~~~~l~~~~~-~~~~~~~~a~~~~~~~~~~ 202 (481)
. .++|.- ....+.....-...++.+.. ...|+.++|..+-....+.
T Consensus 81 R------~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 81 R------KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp H------HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H------HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1 122221 11111111122233333322 1358888888877776543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 481 | ||||
| d1khda1 | 69 | a.46.2.1 (A:12-80) Anthranilate phosphoribosyltran | 1e-04 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 0.002 |
| >d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]} Length = 69 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Methionine synthase domain-like superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain domain: Anthranilate phosphoribosyltransferase (TrpD) species: Pectobacterium carotovorum [TaxId: 554]
Score = 37.8 bits (88), Expect = 1e-04
Identities = 11/67 (16%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 280 TYNSLIKPLCKARKL--DEARQAFDEMLQRGISPTIRTYHAFLDIIR----TGEEVFGLL 333
T+ +++ L K++ + +E+ Q F +++ + + A L ++ EE+ G
Sbjct: 1 THQPILEKLFKSQSMTQEESHQLFAAIVRGELEDSQLA--AALISMKMRGERPEEIAGAA 58
Query: 334 ESMRKMG 340
++
Sbjct: 59 SALLADA 65
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (87), Expect = 0.002
Identities = 19/195 (9%), Positives = 44/195 (22%), Gaps = 2/195 (1%)
Query: 211 FSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSME 270
IS + L + + + A R L+ E
Sbjct: 69 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE 128
Query: 271 EKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVF 330
E + ++ L E ++ F ++ + L ++ +
Sbjct: 129 EGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEY 188
Query: 331 GLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENG--NGPDRSSYTALIH 388
+ Y++ K + + S L
Sbjct: 189 DKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGI 248
Query: 389 ALFLNGKLEEAHQYY 403
+ G EA +++
Sbjct: 249 SCINLGAHREAVEHF 263
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 481 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.86 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.56 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.55 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.23 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.17 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.15 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.14 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.14 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.09 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.07 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.03 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.93 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.85 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.51 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.5 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.46 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.44 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.42 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.38 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.33 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.33 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.33 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.32 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.2 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.13 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.09 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.09 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.01 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.93 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.84 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.81 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.81 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.78 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.73 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.7 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.69 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.65 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.65 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.63 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.63 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.57 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.55 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.51 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.48 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.42 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.36 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.29 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.14 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.99 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.71 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.71 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.64 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.46 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.18 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.83 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.82 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.99 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.46 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 92.32 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.42 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 83.45 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=8.4e-20 Score=167.48 Aligned_cols=353 Identities=14% Similarity=0.094 Sum_probs=240.6
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
.++.+.|.+.++.+....+ -+..++..+..++.+.|++++|...|+...+. +|.+..++..+...+...|++++
T Consensus 12 ~G~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 12 AGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ----NPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHhhhhccccc
Confidence 4788999999999875542 46788999999999999999999999998876 44457889999999999999999
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQ 201 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 201 (481)
|+..+....+.. +.+..............+....+.......................... ..+....+...+.....
T Consensus 86 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK-ALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH-TTSCHHHHHHHHHHHHH
T ss_pred cccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccc-ccchhhhhHHHHHHhhc
Confidence 999999988765 3344555555555556666666655554433333344555555555566 78888888888887776
Q ss_pred cCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhH
Q 042941 202 RGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTY 281 (481)
Q Consensus 202 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 281 (481)
.... +...+..+...+...|++++|...++...+.. +-+...+..+...+...|++++|...++.....+.. +...+
T Consensus 164 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 240 (388)
T d1w3ba_ 164 TQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVH 240 (388)
T ss_dssp HCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHH
T ss_pred cCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHH
Confidence 5432 56677778888999999999999999888764 446778888999999999999999999998887544 66777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhch---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 042941 282 NSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTG---EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRW 358 (481)
Q Consensus 282 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 358 (481)
..+...+.+.|++++|...|++..+.... +...+..+...+... .++...++...... +.+...+..+...+...
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHC
Confidence 88888999999999999999988775321 233333333333222 22233333332222 33444445555555555
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 359 RQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 359 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
|++++|...+++..+... -+..+|..+..+|.+.|++++|...|++..+
T Consensus 319 ~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555544321 1344445555555555555555555555443
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=5.3e-19 Score=162.08 Aligned_cols=377 Identities=11% Similarity=0.007 Sum_probs=293.8
Q ss_pred HHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHc
Q 042941 71 MIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCR 150 (481)
Q Consensus 71 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 150 (481)
+...+.+.|++++|.+.|+++.+. +|.++.++..+...+...|++++|+..|+++.+.. +-+..++..+..+|.+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~ 79 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQ----EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhh
Confidence 345667889999999999999886 44458899999999999999999999999998865 3367889999999999
Q ss_pred CCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHH
Q 042941 151 YKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRL 230 (481)
Q Consensus 151 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 230 (481)
.|++++|...+.......+.+............ ..+....+............. ...............+....+...
T Consensus 80 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 157 (388)
T d1w3ba_ 80 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALV-AAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hcccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-cccccccccccccccchhhhhHHH
Confidence 999999999998866555556666666666666 666666666666655554333 334445556667788888899888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042941 231 FDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGIS 310 (481)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 310 (481)
+....... +.+...+..+...+...|+++.|...+++..+..+. +...+..+...+...|++++|...++.....+..
T Consensus 158 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 235 (388)
T d1w3ba_ 158 YLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh
Confidence 88887764 456778888899999999999999999999887543 6778888999999999999999999998876533
Q ss_pred CCHHHHHHHHHHHhch---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042941 311 PTIRTYHAFLDIIRTG---EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALI 387 (481)
Q Consensus 311 p~~~~~~~li~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 387 (481)
+...+..+...+.+. +++...++...+.. +-+..++..+...+...|++++|.+.++...... +.+...+..+.
T Consensus 236 -~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 312 (388)
T d1w3ba_ 236 -HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA 312 (388)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHH
Confidence 455555555555554 45566666666653 4467789999999999999999999999988753 35778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhhhhH---HHHHHHHHhhcCccCCCCccccccccccchh
Q 042941 388 HALFLNGKLEEAHQYYMEMKEKQLLPEP-KTDELLQDWSYNKQF---VERQIASLKAHQPQSGQNTRVISKKSDQDRE 461 (481)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 461 (481)
..+.+.|++++|++.|++..+. .|+. .++..+...+...|. +.+.++.+.+.+|+++..+..++.+|.+.|+
T Consensus 313 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 313 NIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999998864 5654 445555555555544 4555667778889999999999999887764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=7e-13 Score=117.65 Aligned_cols=229 Identities=13% Similarity=0.002 Sum_probs=166.3
Q ss_pred HHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 042941 70 TMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALC 149 (481)
Q Consensus 70 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 149 (481)
.....+.+.|++++|...|+.+.+. +|.+..+|..+...+...|++++|+..|.+..+.. +-+...+..+..+|.
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 98 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQ----DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 98 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccc
Confidence 3455566777777777777777765 44446677777777777777777777777776654 224566666777777
Q ss_pred cCCChhhHHHHHhhccCCCCCc---------------hHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-cccHHhHHH
Q 042941 150 RYKNVQDAEHLMFCNKDVFPFN---------------TKSFNIILNGWCNIIGSSREAERVWMEMSQRGI-CYDVVSFSC 213 (481)
Q Consensus 150 ~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~ 213 (481)
..|++++|.+.++......+.. .......+..+. ..+.+.+|...+........ .++...+..
T Consensus 99 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~al~~~p~~~~~~~~~~ 177 (323)
T d1fcha_ 99 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCG 177 (323)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred ccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHH-HhhHHHHHHHHHHHHHHHhhcccccccchh
Confidence 7777777777776532211111 011111223334 55677888888888776533 245677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 042941 214 IISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARK 293 (481)
Q Consensus 214 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 293 (481)
+...+...|++++|...|+...... +-+..+|..+..+|...|++++|.+.|++..+..+. +..+|..+..+|.+.|+
T Consensus 178 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~ 255 (323)
T d1fcha_ 178 LGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGA 255 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCC
Confidence 8899999999999999999998874 446788999999999999999999999999887543 67788899999999999
Q ss_pred HHHHHHHHHHHHH
Q 042941 294 LDEARQAFDEMLQ 306 (481)
Q Consensus 294 ~~~a~~~~~~m~~ 306 (481)
+++|+..|++..+
T Consensus 256 ~~~A~~~~~~al~ 268 (323)
T d1fcha_ 256 HREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998766
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=2.9e-12 Score=113.58 Aligned_cols=256 Identities=14% Similarity=0.041 Sum_probs=183.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcC
Q 042941 108 ILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIG 187 (481)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 187 (481)
.....+.+.|++++|+..|+++.+.. +-++.+|..+..++...|++++|...|.+.....|.+...+..+...+. ..|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT-NES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccc-ccc
Confidence 35666789999999999999999865 3367889999999999999999999998866555667888888999999 999
Q ss_pred CHHHHHHHHHHHHhcCCccc--------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHH
Q 042941 188 SSREAERVWMEMSQRGICYD--------------VVSFSCIISCYSKARNLHKVLRLFDQMKRMG-IECDRKVYNAVIHA 252 (481)
Q Consensus 188 ~~~~a~~~~~~~~~~g~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~ 252 (481)
++++|.+.++.......... .......+..+...+.+.++...+....+.. ..++..++..+...
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 99999999998876532100 0001112223344556777887777766643 22356677778888
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHH
Q 042941 253 LAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGL 332 (481)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~ 332 (481)
+...|++++|...|++..+..+. +...|..+...|...|++++|...|++..+..
T Consensus 182 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------------ 236 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ------------------------ 236 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------
T ss_pred HHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh------------------------
Confidence 88888888888888888776543 56778888888888888888888888776642
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----------CCCCHHHHHHHHHHHHhcCCHHHH
Q 042941 333 LESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENG----------NGPDRSSYTALIHALFLNGKLEEA 399 (481)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A 399 (481)
+-+..++..+..+|.+.|++++|++.|++..+.. .......|..+-.++...|+.+.+
T Consensus 237 ---------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 237 ---------PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 304 (323)
T ss_dssp ---------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred ---------hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 2235567778888888888888888888876521 111233455555555555555433
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1.2e-09 Score=95.57 Aligned_cols=217 Identities=8% Similarity=-0.023 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCCCHHhHHH
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH-DVGRAINAFYAYKRFKFAVGIEDFQG 143 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (481)
..+|+.+...+.+.+.+++|+.+++.+.+. +|.+..+|+....++...| ++++|+..++...+... -+..+|..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l----nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~ 117 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIEL----NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHH 117 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHH----CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHH
Confidence 566777778888999999999999999987 5556888998888888876 58999999999988653 36788999
Q ss_pred HHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCC
Q 042941 144 LLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARN 223 (481)
Q Consensus 144 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~ 223 (481)
+...+.+.|++++|+..+.......|.+...|..+...+. ..|++++|+..++.+.+.++. +...|+.+...+.+.+.
T Consensus 118 ~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~-~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~ 195 (315)
T d2h6fa1 118 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQ-EFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTG 195 (315)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccc
Confidence 9999999999999999999877667778999999999999 999999999999999887544 66677777666666554
Q ss_pred ------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHh
Q 042941 224 ------LHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAP-NVVTYNSLIKPLCK 290 (481)
Q Consensus 224 ------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~ 290 (481)
+++|+..+....+.. +.+...|..+...+.. ...+++...++...+....+ +...+..+...|..
T Consensus 196 ~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 196 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred cchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 678888888888774 4567777766665544 44677888888777654332 33445555555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.17 E-value=8.4e-09 Score=89.96 Aligned_cols=188 Identities=6% Similarity=-0.052 Sum_probs=141.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCch-HhHHHHHHHHHHhcCCHHHHHHH
Q 042941 117 HDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNT-KSFNIILNGWCNIIGSSREAERV 195 (481)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~a~~~ 195 (481)
+..++|..+|++..+...+.+...|...+....+.|+++.|..+|+++....+.+. .+|...+.... +.|+.+.|.++
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~-~~~~~~~ar~i 156 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH-HHHCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HcCChHHHHHH
Confidence 34578888888888654455666778888888899999999999988655444443 46888888887 88999999999
Q ss_pred HHHHHhcCCcccHHhHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC
Q 042941 196 WMEMSQRGICYDVVSFSCIIS-CYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGV 274 (481)
Q Consensus 196 ~~~~~~~g~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 274 (481)
|+.....+.. +...|..... -+...|+.+.|..+|+.+.+.. +.+...|...+..+.+.|+++.|..+|++..+...
T Consensus 157 ~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 157 FKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 9998877544 2333333332 2445688999999999988863 55678889999999999999999999999877642
Q ss_pred -CCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 275 -APN--VVTYNSLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 275 -~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
.|. ...|...+..-...|+.+.+..+++.+.+.
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 332 346777777777889999999999887653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.15 E-value=1e-08 Score=89.44 Aligned_cols=189 Identities=11% Similarity=0.078 Sum_probs=131.8
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 042941 187 GSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLM 266 (481)
Q Consensus 187 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 266 (481)
+..++|..+|++..+...+.+...|...+....+.|+++.|..+|+.+.+.........|...+..+.+.|+++.|..+|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34566777777776654444555666677777778888888888887776532223446777777777788888888888
Q ss_pred HHHHHcCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCH
Q 042941 267 KSMEEKGVAPNVVTYNSLIKP-LCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTN 345 (481)
Q Consensus 267 ~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (481)
+++.+.+.. +...|...... +...|+.+.|..+|+.+.+. .+.+.
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~---------------------------------~p~~~ 203 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---------------------------------YGDIP 203 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---------------------------------HTTCH
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---------------------------------hhhhH
Confidence 887766443 33333332222 23356777777777776653 14456
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 346 DTYIMLIKKFSRWRQFGNVFKVWNEISENG-NGPD--RSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
..+...+..+.+.|+++.|+.+|++..... ..|+ ...|...+.--...|+.+.+.++++++.+.
T Consensus 204 ~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 778888888899999999999999987753 3332 457888888778889999999999988764
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=1.5e-08 Score=90.23 Aligned_cols=269 Identities=9% Similarity=-0.090 Sum_probs=158.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCC----HHhHHHHHHHHHcCCChhhHHHHHhhccCC------CCCchHhHHHHH
Q 042941 110 IRRYCAVHDVGRAINAFYAYKRFKFAVG----IEDFQGLLSALCRYKNVQDAEHLMFCNKDV------FPFNTKSFNIIL 179 (481)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~l~ 179 (481)
...+...|++++|+..+++..+.....+ ..++..+..++...|++++|...|+..... .+.....+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3445556666666666666554321111 123444555566666666666666542110 011122344445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc----CCc--c-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHH
Q 042941 180 NGWCNIIGSSREAERVWMEMSQR----GIC--Y-DVVSFSCIISCYSKARNLHKVLRLFDQMKRMG----IECDRKVYNA 248 (481)
Q Consensus 180 ~~~~~~~~~~~~a~~~~~~~~~~----g~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~ 248 (481)
..+. ..|++..+...+...... +.. + ....+..+...+...|+++.+...+....... .......+..
T Consensus 99 ~~~~-~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 99 EILF-AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHH-HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 5555 677777777777654431 111 1 12244455667777888888888777766532 1222344555
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcC----CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042941 249 VIHALAKGRLVKDAISLMKSMEEKG----VAP--NVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDI 322 (481)
Q Consensus 249 li~~~~~~g~~~~a~~~~~~~~~~~----~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 322 (481)
....+...++...+...+....... ..+ ....+..+...+...|+++.|...+....+.....+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------- 247 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN---------- 247 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC----------
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccc----------
Confidence 5666777777877777776654321 111 122344555667778888888888776554321111
Q ss_pred HhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHH
Q 042941 323 IRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISE----NGNGPD-RSSYTALIHALFLNGKLE 397 (481)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~ 397 (481)
......+..+...+...|++++|...++.... .+..|+ ...+..+...|.+.|+++
T Consensus 248 -------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 308 (366)
T d1hz4a_ 248 -------------------HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 308 (366)
T ss_dssp -------------------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred -------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHH
Confidence 12234556677888999999999999988754 233333 346777888999999999
Q ss_pred HHHHHHHHHHH
Q 042941 398 EAHQYYMEMKE 408 (481)
Q Consensus 398 ~A~~~~~~m~~ 408 (481)
+|.+.+++..+
T Consensus 309 ~A~~~l~~Al~ 319 (366)
T d1hz4a_ 309 DAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998755
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=9.8e-09 Score=89.61 Aligned_cols=199 Identities=10% Similarity=0.024 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCC-ChhhHHHHHhhccCCCCCchHhHHHHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYK-NVQDAEHLMFCNKDVFPFNTKSFNIILNG 181 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 181 (481)
..+++.+...+.+.+..++|+..++++.+.+ +-+...|+....++...| ++++|+..++......|.+..+|+.+...
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Confidence 5566677777888889999999999999865 235667888888877766 58899999888766667788888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC---
Q 042941 182 WCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRL--- 258 (481)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--- 258 (481)
+. +.|++++|+..++.+.+.... +...|..+...+.+.|++++|++.++.+.+.+ +.+...|+.+...+.+.+.
T Consensus 122 ~~-~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 122 VE-WLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HH-HHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HH-hhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccch
Confidence 88 889999999999988877444 67788888888899999999999999988875 4567778777666666554
Q ss_pred ---hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 259 ---VKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 259 ---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
+++|...+....+..+. +...|+.+...+. ....+++...++...+.
T Consensus 199 ~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQ-DRGLSKYPNLLNQLLDL 248 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHT-TTCGGGCHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHH-hcChHHHHHHHHHHHHh
Confidence 56788888887776543 6666666655443 34457777777766554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=3.3e-07 Score=81.16 Aligned_cols=276 Identities=9% Similarity=-0.036 Sum_probs=190.3
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC----H
Q 042941 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLV---TKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFA-VG----I 138 (481)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~ 138 (481)
........+...|++++|+.++++..+.. |+.. ...++..+...+...|++++|+..|+...+.... ++ .
T Consensus 14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 91 (366)
T d1hz4a_ 14 FNALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 91 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 34445666778999999999999987652 2211 1245667788889999999999999987653211 11 2
Q ss_pred HhHHHHHHHHHcCCChhhHHHHHhhcc-------CCCCC-chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCcc
Q 042941 139 EDFQGLLSALCRYKNVQDAEHLMFCNK-------DVFPF-NTKSFNIILNGWCNIIGSSREAERVWMEMSQR----GICY 206 (481)
Q Consensus 139 ~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~----g~~~ 206 (481)
..+..+...+...|++..+...+.... ....+ ....+..+...+. ..|+++.+...+...... +...
T Consensus 92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~ 170 (366)
T d1hz4a_ 92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW-AWARLDEAEASARSGIEVLSSYQPQQ 170 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHH-HhcchhhhHHHHHHHHHHhhhhhhhh
Confidence 345567778888999999988876521 11111 2234555667777 899999999999887654 2223
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC---
Q 042941 207 DVVSFSCIISCYSKARNLHKVLRLFDQMKRM----GIEC--DRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPN--- 277 (481)
Q Consensus 207 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--- 277 (481)
...++......+...+++..+...+...... +..+ ....+..+...+...|+++.|...++...+.....+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 250 (366)
T d1hz4a_ 171 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 250 (366)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHH
Confidence 4456666777888899999998888776542 1111 123456667778899999999999988765433222
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 042941 278 VVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQP-TNDTYIMLIKKFS 356 (481)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 356 (481)
...+..+..++...|++++|...++...... ...+..| ....+..+...|.
T Consensus 251 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------------------------~~~~~~~~~~~~~~~la~~~~ 302 (366)
T d1hz4a_ 251 QGQWRNIARAQILLGEFEPAEIVLEELNENA----------------------------RSLRLMSDLNRNLLLLNQLYW 302 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------------------HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----------------------------hhcccChHHHHHHHHHHHHHH
Confidence 3345567788999999999999998875420 1111122 2346777888899
Q ss_pred hcCChhHHHHHHHHHHH
Q 042941 357 RWRQFGNVFKVWNEISE 373 (481)
Q Consensus 357 ~~g~~~~a~~~~~~~~~ 373 (481)
+.|++++|.+.+++..+
T Consensus 303 ~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 303 QAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999999999988755
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=1.7e-09 Score=91.95 Aligned_cols=217 Identities=8% Similarity=-0.111 Sum_probs=121.9
Q ss_pred HHHHHHHHHhhhCCCCCC--CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHH
Q 042941 46 EAAFTFFLWAGKQSGYAH--STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAI 123 (481)
Q Consensus 46 ~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~ 123 (481)
+.++.-++.+.......+ ...+|..+...|.+.|++++|...|++..+. ++..+.+|..+..++...|++++|+
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l----~p~~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI----RPDMPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc----CCCCHHHHhhhchHHHHHHHHHHhh
Confidence 445555555544333222 2356667777888888888888888888775 3444778888888888888888888
Q ss_pred HHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 042941 124 NAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRG 203 (481)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g 203 (481)
..|+++.+... -+..++..+..++...|++++|...|+......|.+......+...+. +.+..+.+..+........
T Consensus 92 ~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 169 (259)
T d1xnfa_ 92 EAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ-KLDEKQAKEVLKQHFEKSD 169 (259)
T ss_dssp HHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHSC
T ss_pred hhhhHHHHHHh-hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHH-HhhhHHHHHHHHHHhhccc
Confidence 88888887542 245567777777888888888888887654434444444333333444 4555555544444444432
Q ss_pred CcccHHhHHHHHHHHHhcCC----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 204 ICYDVVSFSCIISCYSKARN----LHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 204 ~~~~~~~~~~ll~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
..+ ..++ ++..+..... .+.+...+....... +-...+|..+...|...|++++|...|+.....
T Consensus 170 ~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 170 KEQ--WGWN-IVEFYLGNISEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp CCS--THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhh--hhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 111 1111 1122211111 111111111111110 111234555666677777777777777776654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=4.3e-09 Score=89.36 Aligned_cols=222 Identities=13% Similarity=-0.050 Sum_probs=151.6
Q ss_pred ChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHH
Q 042941 80 KFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEH 159 (481)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 159 (481)
+.+.++.-+++........++....++..+...|.+.|++++|+..|++..+.. +-++.+|..+..++.+.|++++|+.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 345666677777665332233345678888899999999999999999999865 3467899999999999999999999
Q ss_pred HHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 042941 160 LMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGI 239 (481)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 239 (481)
.|++.....|.+..++..+...+. ..|++++|...|+...+.... +......+..++.+.+..+....+........
T Consensus 93 ~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 169 (259)
T d1xnfa_ 93 AFDSVLELDPTYNYAHLNRGIALY-YGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD- 169 (259)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-
T ss_pred hhhHHHHHHhhhhhhHHHHHHHHH-HHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc-
Confidence 999876656667788999999999 999999999999998877433 44444444455566666666666666555543
Q ss_pred CCCHHHHHHHHHHHHcCCC----hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 240 ECDRKVYNAVIHALAKGRL----VKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 240 ~~~~~~~~~li~~~~~~g~----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
++...++ ++..+..... .+.+...+........ -...+|..+...|...|++++|...|+......
T Consensus 170 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 170 -KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAE-HLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp -CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred -hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 2222222 2222222222 2222222221111100 123456778889999999999999999988764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.93 E-value=3.8e-09 Score=93.47 Aligned_cols=224 Identities=9% Similarity=-0.063 Sum_probs=128.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHcCCChHH
Q 042941 185 IIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKAR--NLHKVLRLFDQMKRMGIECDRKVYN-AVIHALAKGRLVKD 261 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~ 261 (481)
..|++++|+..++......++ +...|..+..++...+ ++++|...++.+.... +++...+. .....+...+.++.
T Consensus 85 ~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHH
Confidence 345566677777766655333 4445555555555544 3677777777776653 33444443 33455666677777
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCC
Q 042941 262 AISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGC 341 (481)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~ 341 (481)
|...++.+.+.++. +...|+.+...+.+.|++++|...+....+.. |....+............+...+.......
T Consensus 163 Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~- 238 (334)
T d1dcea1 163 ELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--LKELELVQNAFFTDPNDQSAWFYHRWLLGR- 238 (334)
T ss_dssp HHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--HHHHHHHHHHHHHCSSCSHHHHHHHHHHSC-
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--HHHHHHHHHHHHhcchhHHHHHHHHHHHhC-
Confidence 77777777666544 56667777777777777666554443322210 111111000111111122222223222222
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 042941 342 QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417 (481)
Q Consensus 342 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 417 (481)
+++...+..+...+...|++++|...+.+..+..+ .+...|..+..++.+.|++++|.+.|++..+ +.|+...
T Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~ 311 (334)
T d1dcea1 239 AEPLFRCELSVEKSTVLQSELESCKELQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAA 311 (334)
T ss_dssp CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHH
T ss_pred cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHH
Confidence 33334455566667777888899888888776432 2455777888889999999999999999887 4565433
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.85 E-value=8.9e-09 Score=91.04 Aligned_cols=249 Identities=6% Similarity=-0.116 Sum_probs=181.9
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHh----------ccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 042941 45 WEAAFTFFLWAGKQSGYAHSTREYHTMIAILG----------KVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYC 114 (481)
Q Consensus 45 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~----------~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~ 114 (481)
.++|+++++.+....+ -+..+|+..-..+. ..|.+++|+.+++...+. ++.+...|..+..++.
T Consensus 45 ~~~al~~~~~~l~~~P--~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~----~pk~~~~~~~~~~~~~ 118 (334)
T d1dcea1 45 DESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV----NPKSYGTWHHRCWLLS 118 (334)
T ss_dssp SHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh----CCCcHHHHHHhhHHHH
Confidence 4789999998875441 24455654443332 334578899999998876 4445778877777776
Q ss_pred hcC--CHHHHHHHHHHHhhcCCCCCHHhHH-HHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHH
Q 042941 115 AVH--DVGRAINAFYAYKRFKFAVGIEDFQ-GLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSRE 191 (481)
Q Consensus 115 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 191 (481)
..+ ++++|+..+..+.+.. +++...+. .....+...+..+.|+..++......|.+...|+.+...+. ..|++++
T Consensus 119 ~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~-~~~~~~~ 196 (334)
T d1dcea1 119 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP-QLHPQPD 196 (334)
T ss_dssp TCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHH-HHSCCCC
T ss_pred HhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhcCHHH
Confidence 665 5899999999998865 33555554 45577888899999999999987777888999999999998 8998888
Q ss_pred HHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 042941 192 AERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEE 271 (481)
Q Consensus 192 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (481)
|...+...... .|+ . ..+...+...+..+++...+....... +++...+..+...+...++.++|...+.+..+
T Consensus 197 A~~~~~~~~~~--~~~--~-~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 270 (334)
T d1dcea1 197 SGPQGRLPENV--LLK--E-LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEP 270 (334)
T ss_dssp SSSCCSSCHHH--HHH--H-HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhHHh--HHH--H-HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 76666544332 111 1 123334555667777888888777664 45566677777788888999999999998877
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 272 KGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 272 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
..+. +..++..+..+|...|++++|.+.++...+..
T Consensus 271 ~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld 306 (334)
T d1dcea1 271 ENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAVD 306 (334)
T ss_dssp TCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred hCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 6433 56677888889999999999999999998863
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.51 E-value=2.6e-06 Score=72.98 Aligned_cols=196 Identities=9% Similarity=-0.013 Sum_probs=109.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhc----CCCC-CHHhHHHHHHHHHcCCChhhHHHHHhhccC------CCCCchHhHHHH
Q 042941 110 IRRYCAVHDVGRAINAFYAYKRF----KFAV-GIEDFQGLLSALCRYKNVQDAEHLMFCNKD------VFPFNTKSFNII 178 (481)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~l 178 (481)
...|...|++++|...|.++.+. +-++ ...+|..+..+|.+.|++++|...+++... ........+..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 34455666666666666665432 1111 124566666677777777777766654211 111123344555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc----CCcc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHH
Q 042941 179 LNGWCNIIGSSREAERVWMEMSQR----GICY-DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDR------KVYN 247 (481)
Q Consensus 179 ~~~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~ 247 (481)
...+....|++++|...+++..+. +..+ -..++..+...+...|++++|...|+++......... ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 555542458888888888765432 2111 1345667778888888888888888887765321111 1233
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCC-C---hhhHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 042941 248 AVIHALAKGRLVKDAISLMKSMEEKGVAP-N---VVTYNSLIKPLCK--ARKLDEARQAFDEML 305 (481)
Q Consensus 248 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~---~~~~~~li~~~~~--~g~~~~a~~~~~~m~ 305 (481)
..+.++...|+++.|...+++..+..+.. + ......++.++-. .+.+++|+..|+++.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 44455667788888888888776653221 1 1233455555544 234667776665443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=7e-06 Score=65.14 Aligned_cols=122 Identities=10% Similarity=-0.065 Sum_probs=73.1
Q ss_pred hcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 042941 185 IIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAIS 264 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 264 (481)
..|+++.|++.|..+ .+|+..+|..+..+|...|++++|++.|++..+.+ +-+...|..+..+|.+.|++++|..
T Consensus 17 ~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~ 91 (192)
T d1hh8a_ 17 DKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIK 91 (192)
T ss_dssp HTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHHH
Confidence 566666666666543 23455556666666666666666666666666654 4455666666666666666666666
Q ss_pred HHHHHHHcCCC------------CC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042941 265 LMKSMEEKGVA------------PN---VVTYNSLIKPLCKARKLDEARQAFDEMLQRGISP 311 (481)
Q Consensus 265 ~~~~~~~~~~~------------~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 311 (481)
.|++....... .. ..++..+..++.+.|++++|.+.+....+....|
T Consensus 92 ~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 92 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 66665542110 00 1233445566777777777777777766654433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.46 E-value=1.4e-05 Score=68.21 Aligned_cols=203 Identities=10% Similarity=0.030 Sum_probs=133.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc----CCcc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHH
Q 042941 177 IILNGWCNIIGSSREAERVWMEMSQR----GICY-DVVSFSCIISCYSKARNLHKVLRLFDQMKRM----GI-ECDRKVY 246 (481)
Q Consensus 177 ~l~~~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~ 246 (481)
.....|. ..+++++|.+.|.+..+. +-.+ -..+|..+..+|.+.|++++|...++..... |. .....++
T Consensus 42 ~aa~~y~-~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 120 (290)
T d1qqea_ 42 QAATIYR-LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK 120 (290)
T ss_dssp HHHHHHH-HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHH-HCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHH
Confidence 3455677 788999999988877553 2222 2357888889999999999999999876543 21 1113455
Q ss_pred HHHHHHHH-cCCChHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042941 247 NAVIHALA-KGRLVKDAISLMKSMEEK----GVAP-NVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFL 320 (481)
Q Consensus 247 ~~li~~~~-~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 320 (481)
..+...|. ..|++++|...+++..+. +..+ ...++..+...|...|++++|...|++...........
T Consensus 121 ~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~------ 194 (290)
T d1qqea_ 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS------ 194 (290)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT------
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhh------
Confidence 56666664 469999999999887542 1111 13457778899999999999999999987753221100
Q ss_pred HHHhchhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHHh--c
Q 042941 321 DIIRTGEEVFGLLESMRKMGCQPTN-DTYIMLIKKFSRWRQFGNVFKVWNEISENGNG-PD---RSSYTALIHALFL--N 393 (481)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~---~~~~~~l~~~~~~--~ 393 (481)
.... ..+...+..+...|+++.|...+++..+.... ++ ......++.++.. .
T Consensus 195 ---------------------~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~ 253 (290)
T d1qqea_ 195 ---------------------QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253 (290)
T ss_dssp ---------------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCT
T ss_pred ---------------------hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCH
Confidence 1111 12334445667789999999999988775321 11 2345566777655 3
Q ss_pred CCHHHHHHHHHHHH
Q 042941 394 GKLEEAHQYYMEMK 407 (481)
Q Consensus 394 g~~~~A~~~~~~m~ 407 (481)
+.+++|+..|+++.
T Consensus 254 e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 254 EQLSEHCKEFDNFM 267 (290)
T ss_dssp TTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHh
Confidence 45889988887654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=6.9e-06 Score=65.19 Aligned_cols=122 Identities=8% Similarity=-0.056 Sum_probs=57.3
Q ss_pred HhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCCh
Q 042941 75 LGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNV 154 (481)
Q Consensus 75 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 154 (481)
+...|+++.|++.|+.+. .|+ +.+|..+...+...|++++|+..|++..+.+ +.++..|..+..++.+.|++
T Consensus 15 ~~~~~d~~~Al~~~~~i~----~~~---~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAVQ----DPH---SRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHTTCHHHHHHHHHTSS----SCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHHhcC----CCC---HHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 344455555555554321 112 3444445555555555555555555554433 12344444455555555555
Q ss_pred hhHHHHHhhccCCC---------------CC-chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 042941 155 QDAEHLMFCNKDVF---------------PF-NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGIC 205 (481)
Q Consensus 155 ~~a~~~~~~~~~~~---------------~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~ 205 (481)
++|...|++..... .. ...++..+..++. +.|++++|.+.+.........
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~-~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA-KKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCC
Confidence 55544444321000 00 1233444455566 677777777777666554333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=3.5e-06 Score=60.81 Aligned_cols=100 Identities=12% Similarity=-0.111 Sum_probs=62.7
Q ss_pred HHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHc
Q 042941 71 MIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCR 150 (481)
Q Consensus 71 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 150 (481)
-...+.+.|++++|+..|++..+. ++.++..|..+..++...|++++|+..+....+.+ +.++..|..+..++..
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL----DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc----CCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHH
Confidence 345566667777777777776665 44446666667777777777777777777766654 3355666666666666
Q ss_pred CCChhhHHHHHhhccCCCCCchHhH
Q 042941 151 YKNVQDAEHLMFCNKDVFPFNTKSF 175 (481)
Q Consensus 151 ~~~~~~a~~~~~~~~~~~~~~~~~~ 175 (481)
.|++++|+..|++.....|.+...+
T Consensus 84 ~~~~~~A~~~~~~a~~~~p~~~~~~ 108 (117)
T d1elwa_ 84 LNRFEEAKRTYEEGLKHEANNPQLK 108 (117)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 7777777666666544444343333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=1.1e-05 Score=58.11 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=37.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 042941 218 YSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEA 297 (481)
Q Consensus 218 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 297 (481)
+.+.|++++|+..|+...+.. +.+...|..+..+|...|++++|+..+....+.++. +...|..+..++...|++++|
T Consensus 13 ~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~~A 90 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFEEA 90 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCHHHH
Confidence 344444444444444444432 233344444444444444444444444444443322 334444444444444444444
Q ss_pred HHHHHHHHH
Q 042941 298 RQAFDEMLQ 306 (481)
Q Consensus 298 ~~~~~~m~~ 306 (481)
+..|+...+
T Consensus 91 ~~~~~~a~~ 99 (117)
T d1elwa_ 91 KRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=1.6e-05 Score=60.90 Aligned_cols=91 Identities=8% Similarity=-0.005 Sum_probs=52.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 042941 179 LNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRL 258 (481)
Q Consensus 179 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 258 (481)
...+. +.|++++|+..|++..+.... +...|..+..+|...|++++|...|+...+.. +-+..+|..+..++...|+
T Consensus 17 gn~~~-~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYF-KAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHH-HcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence 33445 566666666666665555332 44555555566666666666666666665543 3344556666666666666
Q ss_pred hHHHHHHHHHHHHc
Q 042941 259 VKDAISLMKSMEEK 272 (481)
Q Consensus 259 ~~~a~~~~~~~~~~ 272 (481)
+++|...+++..+.
T Consensus 94 ~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 66666666666554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=5e-06 Score=63.82 Aligned_cols=89 Identities=8% Similarity=-0.108 Sum_probs=53.7
Q ss_pred HHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcC
Q 042941 72 IAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRY 151 (481)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 151 (481)
...+.+.|++++|+..|++..+. ++.+...|..+...+...|++++|+..|+..++.+ +-+..+|..+..++...
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHhhhcccc----chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHc
Confidence 44455666666666666666655 33346666666666666666666666666666544 22445566666666666
Q ss_pred CChhhHHHHHhhcc
Q 042941 152 KNVQDAEHLMFCNK 165 (481)
Q Consensus 152 ~~~~~a~~~~~~~~ 165 (481)
|++++|...+++..
T Consensus 92 g~~~eA~~~~~~a~ 105 (159)
T d1a17a_ 92 GKFRAALRDYETVV 105 (159)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666665543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.33 E-value=4.7e-06 Score=66.87 Aligned_cols=99 Identities=10% Similarity=-0.056 Sum_probs=59.2
Q ss_pred ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 042941 206 YDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLI 285 (481)
Q Consensus 206 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 285 (481)
|+...+......+.+.|++++|+..|+...... +.+...|..+..+|.+.|++++|...|+...+..+. +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 444445555566666666666666666665553 445556666666666666666666666666554332 455566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 042941 286 KPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 286 ~~~~~~g~~~~a~~~~~~m~~ 306 (481)
.+|...|++++|+..|++..+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666666665543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.32 E-value=8.5e-07 Score=71.41 Aligned_cols=96 Identities=11% Similarity=-0.051 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHH
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQ 142 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (481)
|+...+-.....+.+.|++++|+..|+...+. +|.++.+|..+..+|.+.|++++|+..|+...+.. +-++.+|.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~----~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~ 76 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHF 76 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHH
Confidence 44445555555555555555555555555544 23335555555555555555555555555555432 11344455
Q ss_pred HHHHHHHcCCChhhHHHHHhh
Q 042941 143 GLLSALCRYKNVQDAEHLMFC 163 (481)
Q Consensus 143 ~ll~~~~~~~~~~~a~~~~~~ 163 (481)
.+..+|...|++++|+..|+.
T Consensus 77 ~lg~~~~~l~~~~~A~~~~~~ 97 (201)
T d2c2la1 77 FLGQCQLEMESYDEAIANLQR 97 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 555555555555555555544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.20 E-value=0.0011 Score=55.15 Aligned_cols=227 Identities=13% Similarity=0.047 Sum_probs=134.9
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCCHH
Q 042941 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCA----VHDVGRAINAFYAYKRFKFAVGIE 139 (481)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 139 (481)
|+..+..+...+-+.|++++|++.|++..+.| + ..++..|...|.. ..+...|...+......+ ++.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~---~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~ 71 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---E---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN 71 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---C---HHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccc
Confidence 35566666667777788888888888776654 3 4455555555554 457777777777776654 223
Q ss_pred hHHHHHHHHH----cCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHH---hcCCHHHHHHHHHHHHhcCCcccHHhHH
Q 042941 140 DFQGLLSALC----RYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCN---IIGSSREAERVWMEMSQRGICYDVVSFS 212 (481)
Q Consensus 140 ~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 212 (481)
....+...+. ...+.+.|...+......- .......+...+.. .......+...+...... .+...+.
T Consensus 72 a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ 146 (265)
T d1ouva_ 72 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCT 146 (265)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHH
T ss_pred hhhccccccccccccchhhHHHHHHHhhhhhhh--hhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhh
Confidence 3333333332 2345666776666532211 11222222222220 234556666666665554 2455566
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 042941 213 CIISCYSK----ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAK----GRLVKDAISLMKSMEEKGVAPNVVTYNSL 284 (481)
Q Consensus 213 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 284 (481)
.+...+.. ..+...+...++...+.| +......+...|.. ..+++.|...|....+.| +...+..|
T Consensus 147 ~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~L 220 (265)
T d1ouva_ 147 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 220 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred hhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHH
Confidence 66666664 455677777777777655 45555555555554 467888888888888775 44555666
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 042941 285 IKPLCK----ARKLDEARQAFDEMLQRGIS 310 (481)
Q Consensus 285 i~~~~~----~g~~~~a~~~~~~m~~~~~~ 310 (481)
...|.. ..+.++|.++|++..+.|..
T Consensus 221 G~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 221 GAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 666654 34788888888888777644
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.13 E-value=1.5e-05 Score=56.75 Aligned_cols=82 Identities=9% Similarity=0.057 Sum_probs=39.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 042941 185 IIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAIS 264 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 264 (481)
+.|++++|+..|++....... +..+|..+..++.+.|++++|+..|+...+.. +.+...+..+..+|...|++++|.+
T Consensus 28 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~~A~~ 105 (112)
T d1hxia_ 28 KLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALA 105 (112)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHHHHHH
Confidence 445555555555554444222 34444445555555555555555555544442 3334444445555555555555555
Q ss_pred HHHH
Q 042941 265 LMKS 268 (481)
Q Consensus 265 ~~~~ 268 (481)
.+++
T Consensus 106 ~l~~ 109 (112)
T d1hxia_ 106 SLRA 109 (112)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.09 E-value=1.9e-05 Score=56.16 Aligned_cols=89 Identities=10% Similarity=0.010 Sum_probs=66.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 042941 214 IISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARK 293 (481)
Q Consensus 214 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 293 (481)
....+.+.|++++|...|++..+.. +-+..+|..+..++.+.|++++|...|++..+..+. +...|..+...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCC
Confidence 4556677788888888888877764 346777777788888888888888888887776544 66777777778888888
Q ss_pred HHHHHHHHHHH
Q 042941 294 LDEARQAFDEM 304 (481)
Q Consensus 294 ~~~a~~~~~~m 304 (481)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=1.9e-05 Score=57.00 Aligned_cols=107 Identities=14% Similarity=0.153 Sum_probs=78.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-
Q 042941 282 NSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQ- 360 (481)
Q Consensus 282 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 360 (481)
..+++.+...+++++|.+.|+.....+ +.+..++..+..++.+.++
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~---------------------------------p~~~~~~~n~a~~L~~s~~~ 49 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG---------------------------------SVSKSTQFEYAWCLVRTRYN 49 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS---------------------------------CCCHHHHHHHHHHHTTSSSH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC---------------------------------CCCHHHHHHHHHHHHHhcch
Confidence 346667777778888888887776653 4566777778888876554
Q ss_pred --hhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 042941 361 --FGNVFKVWNEISENGNGPDR-SSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQD 423 (481)
Q Consensus 361 --~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 423 (481)
+++|+.+++++...+..|+. .+|..+..+|.+.|++++|+++|+++.+ +.|+..-...+..
T Consensus 50 ~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l~~ 113 (122)
T d1nzna_ 50 DDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQNNQAKELER 113 (122)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--hCcCCHHHHHHHH
Confidence 55799999998876544432 3677889999999999999999999987 5687665544443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=2.3e-05 Score=56.57 Aligned_cols=93 Identities=16% Similarity=0.207 Sum_probs=46.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHH
Q 042941 214 IISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRL---VKDAISLMKSMEEKGVAPN-VVTYNSLIKPLC 289 (481)
Q Consensus 214 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~ 289 (481)
+++.+...+++++|.+.|+.....+ +.+..++..+..++.+.++ +++|..+|+++...+..|+ ..++..+..+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 4444555555555555555555543 3445555555555554333 2345555555554432222 123444555555
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 042941 290 KARKLDEARQAFDEMLQR 307 (481)
Q Consensus 290 ~~g~~~~a~~~~~~m~~~ 307 (481)
+.|++++|...|+++.+.
T Consensus 84 ~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHh
Confidence 555555555555555553
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=0.00028 Score=54.30 Aligned_cols=61 Identities=8% Similarity=-0.019 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 211 FSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 211 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
|+.+..+|.+.|++++|+..++...... +.++.++..+..+|...|++++|...|+...+.
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3444455555555555555555555543 334555555555555555555555555555554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=0.0008 Score=51.58 Aligned_cols=64 Identities=16% Similarity=0.012 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 244 KVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
.+|+.+..+|.+.|++++|+..++...+..+. ++..|..+..+|...|++++|...|+...+.+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 45677888999999999999999999988654 88889999999999999999999999998864
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.81 E-value=0.0061 Score=50.33 Aligned_cols=64 Identities=6% Similarity=0.014 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 042941 345 NDTYIMLIKKFSR----WRQFGNVFKVWNEISENGNGPDRSSYTALIHALFL----NGKLEEAHQYYMEMKEKQL 411 (481)
Q Consensus 345 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 411 (481)
......+...|.. ..++++|...|....+.| ++..+..|...|.+ ..+.++|.++|++..+.|.
T Consensus 178 ~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 178 SPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 3444444444443 568899999999988875 45666677777764 3378889999999887764
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.81 E-value=0.0075 Score=51.30 Aligned_cols=282 Identities=11% Similarity=0.065 Sum_probs=152.5
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHH
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQ 142 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (481)
||...-..+...|.+.|.++.|..+|..+.. |..++..+.+.+++..|.+.+.+. -+..+|.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d------------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k 73 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN------------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 73 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC------------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC------------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHH
Confidence 4555566677777788888888888876642 445666777788888877776543 2556777
Q ss_pred HHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcC
Q 042941 143 GLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKAR 222 (481)
Q Consensus 143 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~ 222 (481)
.+..++.+......+.-+ ......+......++..|- ..|.+++...+++..... -..+...++.++..|++.+
T Consensus 74 ~~~~~l~~~~e~~la~i~----~~~~~~~~d~l~~~v~~ye-~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 74 EVCFACVDGKEFRLAQMC----GLHIVVHADELEELINYYQ-DRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHHHTTCHHHHHHT----TTTTTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCcHHHHHHHH----HHHhhcCHHHHHHHHHHHH-HcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 777777776665443221 1112224444556777777 788888888888776543 2345566777777777764
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH----------HHcCCCCChhhHHHHHHHHHhcC
Q 042941 223 NLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSM----------EEKGVAPNVVTYNSLIKPLCKAR 292 (481)
Q Consensus 223 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----------~~~~~~~~~~~~~~li~~~~~~g 292 (481)
.++..+.++.... . ....-++..|.+.+.++++.-++..+ .+. .++..-....+..+.+.+
T Consensus 148 -~~kl~e~l~~~s~---~---y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~--~~~~~~~~~f~e~~~k~~ 218 (336)
T d1b89a_ 148 -PQKMREHLELFWS---R---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH--PTDAWKEGQFKDIITKVA 218 (336)
T ss_dssp -HHHHHHHHHHHST---T---SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS--TTTTCCHHHHHHHHHHCS
T ss_pred -hHHHHHHHHhccc---c---CCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHc--chhhhhHHHHHHHHHccC
Confidence 3444443333211 1 11222344444444444444444332 221 234444555666667777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 042941 293 KLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEIS 372 (481)
Q Consensus 293 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 372 (481)
+++...++.....+. .|+ ..+.++......-+. .-++..+-+.+++.-....++...
T Consensus 219 N~e~~~~~i~~yL~~--~p~--~i~~lL~~v~~~~d~-------------------~r~V~~~~k~~~l~li~p~Le~v~ 275 (336)
T d1b89a_ 219 NVELYYRAIQFYLEF--KPL--LLNDLLMVLSPRLDH-------------------TRAVNYFSKVKQLPLVKPYLRSVQ 275 (336)
T ss_dssp STHHHHHHHHHHHHH--CGG--GHHHHHHHHGGGCCH-------------------HHHHHHHHHTTCTTTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHHc--CHH--HHHHHHHHhccCCCH-------------------HHHHHHHHhcCCcHHHHHHHHHHH
Confidence 766666665555442 122 223333332222111 235555666777777777777766
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042941 373 ENGNGPDRSSYTALIHALFLNGKLEEAHQYY 403 (481)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 403 (481)
..+ +..+.+++...|...++++.-.+..
T Consensus 276 ~~n---~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 276 NHN---NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp TTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 654 4578899999999999976644443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=0.00016 Score=52.63 Aligned_cols=94 Identities=13% Similarity=0.143 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-C-----hhhHHHHH
Q 042941 212 SCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAP-N-----VVTYNSLI 285 (481)
Q Consensus 212 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~-----~~~~~~li 285 (481)
..+...+.+.|++++|+..|.+..+.+ +.+...+..+..+|.+.|++++|...++++.+..... . ..+|..+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 344555666666666666666666653 3455666666666666666666666666655432110 0 12344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 042941 286 KPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 286 ~~~~~~g~~~~a~~~~~~m~~ 306 (481)
..+...+++++|...|.....
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 555556666666666665544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.73 E-value=0.0011 Score=49.81 Aligned_cols=61 Identities=11% Similarity=0.122 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 211 FSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 211 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
|..+..+|.+.|++++|++.++...+.+ +.+..+|..+..++...|++++|...|+...+.
T Consensus 70 ~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 70 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3334444444455555555444444442 334444444444444455555555544444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.70 E-value=0.0016 Score=48.80 Aligned_cols=64 Identities=14% Similarity=0.012 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 244 KVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
.+|..+..+|.+.|++++|+..++...+..+. +..+|..+..++...|++++|...|+...+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 46777889999999999999999999988654 88999999999999999999999999998864
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.69 E-value=0.00063 Score=52.58 Aligned_cols=79 Identities=15% Similarity=0.107 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhHHHH
Q 042941 346 DTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKE-----KQLLPEPKTDEL 420 (481)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~ 420 (481)
..+..+...+...|++++|...++++.+... -+...|..++.+|.+.|+.++|++.|+++.. .|+.|+..+-..
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l 146 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 146 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 4567788999999999999999999998654 4788999999999999999999999999744 599999877555
Q ss_pred HHHHH
Q 042941 421 LQDWS 425 (481)
Q Consensus 421 l~~~~ 425 (481)
.-..+
T Consensus 147 ~~~il 151 (179)
T d2ff4a2 147 NERIL 151 (179)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=0.00033 Score=50.86 Aligned_cols=19 Identities=11% Similarity=0.429 Sum_probs=7.7
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 042941 216 SCYSKARNLHKVLRLFDQM 234 (481)
Q Consensus 216 ~~~~~~~~~~~a~~~~~~~ 234 (481)
..+...+++++|...|+..
T Consensus 87 ~~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 3333344444444444333
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.65 E-value=0.00075 Score=51.74 Aligned_cols=61 Identities=11% Similarity=0.063 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 211 FSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 211 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
|..+..++.+.|++++|+..++...+.. +.+..+|..+..++...|++++|...|+...+.
T Consensus 80 ~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 80 VLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3334444455555555555555554443 334444445555555555555555555555443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.63 E-value=0.0011 Score=50.60 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 042941 211 FSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKG 273 (481)
Q Consensus 211 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 273 (481)
|..+..+|.+.|++++|+..++...+.. +.+..+|..+..++...|++++|...|+.+.+..
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4445556666777777777777666654 4566666666667777777777777777766653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.63 E-value=0.00082 Score=51.88 Aligned_cols=69 Identities=10% Similarity=0.160 Sum_probs=42.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH-----HcCCCCChh
Q 042941 210 SFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSME-----EKGVAPNVV 279 (481)
Q Consensus 210 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~ 279 (481)
.+..+...+...|++++|...++.+.... +-+...|..++.+|.+.|+.++|++.|+++. +.|+.|+..
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 44555666666666666666666666653 4466666666666666666666666666653 246666544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=5e-05 Score=70.09 Aligned_cols=167 Identities=8% Similarity=-0.119 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhhcCCCCCHHhHHHHH--HHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHH
Q 042941 119 VGRAINAFYAYKRFKFAVGIEDFQGLL--SALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVW 196 (481)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~ 196 (481)
+..+...++...+....++..-....+ ......+.++.++..+...-...+++...+..+...+. +.|+.+.|...+
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~-~~~~~~~A~~~~ 143 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISN-KQTHTSAIVKPQ 143 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------C
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHH-hCCCHHHHHHHH
Confidence 344555565555433233322221111 11222344555655555433333455556666666666 777777777766
Q ss_pred HHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC
Q 042941 197 MEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAP 276 (481)
Q Consensus 197 ~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 276 (481)
....... ...++..+...+...|++++|...|++..+.. +-+...|+.+...+...|+..+|...|.+...... |
T Consensus 144 ~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~-~ 218 (497)
T d1ya0a1 144 SSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF-P 218 (497)
T ss_dssp CHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB-C
T ss_pred HHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-C
Confidence 6554321 12456667777888888888888888887764 44567788888888888888888888888776543 4
Q ss_pred ChhhHHHHHHHHHhc
Q 042941 277 NVVTYNSLIKPLCKA 291 (481)
Q Consensus 277 ~~~~~~~li~~~~~~ 291 (481)
...++..|...+.+.
T Consensus 219 ~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 219 FPAASTNLQKALSKA 233 (497)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 666666676666543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.55 E-value=0.00033 Score=53.74 Aligned_cols=28 Identities=11% Similarity=-0.094 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhc
Q 042941 66 REYHTMIAILGKVRKFDTAWALIDEMRG 93 (481)
Q Consensus 66 ~~~~~li~~~~~~g~~~~a~~~~~~~~~ 93 (481)
..+......+.+.|++.+|...|+....
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~ 43 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVS 43 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566677788888888888877543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.51 E-value=0.00084 Score=51.44 Aligned_cols=82 Identities=7% Similarity=0.015 Sum_probs=52.5
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042941 171 NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVI 250 (481)
Q Consensus 171 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 250 (481)
....+..+..++. +.|++++|+..++...+.... +..+|..+..++.+.|++++|...|+...+.. +.+......+.
T Consensus 76 ~~~~~~nla~~~~-~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~ 152 (169)
T d1ihga1 76 ALSCVLNIGACKL-KMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHH-hhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3445555666666 777777777777777665433 55667777777777777777777777777753 33455555554
Q ss_pred HHHHc
Q 042941 251 HALAK 255 (481)
Q Consensus 251 ~~~~~ 255 (481)
.+..+
T Consensus 153 ~~~~~ 157 (169)
T d1ihga1 153 KVKQK 157 (169)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.48 E-value=0.023 Score=48.20 Aligned_cols=283 Identities=10% Similarity=0.028 Sum_probs=169.2
Q ss_pred CCCHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHH
Q 042941 28 KVSSELVSEVLSWV--RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQT 105 (481)
Q Consensus 28 ~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 105 (481)
.|+......+...| .+.++.|..++..+. -|..++..+.+.++++.|.+.+...- + ..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~~------~---~~~ 71 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKAN------S---TRT 71 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHHT------C---HHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHcC------C---HHH
Confidence 45666777777777 356688888887552 47788899999999999999887653 3 778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHh
Q 042941 106 LLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNI 185 (481)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 185 (481)
|..+...+........+.. .......++.....++..|-..|.+++...+++......+.+...++.++..|+ +
T Consensus 72 ~k~~~~~l~~~~e~~la~i-----~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lya-k 145 (336)
T d1b89a_ 72 WKEVCFACVDGKEFRLAQM-----CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS-K 145 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHH-----TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHhCcHHHHHHH-----HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHH-H
Confidence 9999998888776655422 233334566667789999999999999999998865545677788999999988 6
Q ss_pred cCCHHHHHHHHHHHHhcCCccc--------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 042941 186 IGSSREAERVWMEMSQRGICYD--------VVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGR 257 (481)
Q Consensus 186 ~~~~~~a~~~~~~~~~~g~~~~--------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (481)
.+ .++..+.+..... ...+. ...|..++..|.+.|++++|..++ ..+ .++..-....+..+.+..
T Consensus 146 ~~-~~kl~e~l~~~s~-~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~ 218 (336)
T d1b89a_ 146 FK-PQKMREHLELFWS-RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVA 218 (336)
T ss_dssp TC-HHHHHHHHHHHST-TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCS
T ss_pred hC-hHHHHHHHHhccc-cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccC
Confidence 54 4444444433311 11111 112334444455555555544432 222 334444455667777888
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHH
Q 042941 258 LVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMR 337 (481)
Q Consensus 258 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~ 337 (481)
+.+...++.....+. +....+.++......-+...+.+.++ +.+.-|-. ...++...
T Consensus 219 N~e~~~~~i~~yL~~----~p~~i~~lL~~v~~~~d~~r~V~~~~---k~~~l~li----------------~p~Le~v~ 275 (336)
T d1b89a_ 219 NVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFS---KVKQLPLV----------------KPYLRSVQ 275 (336)
T ss_dssp STHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHHHHHHHHH---HTTCTTTT----------------HHHHHHHH
T ss_pred ChHHHHHHHHHHHHc----CHHHHHHHHHHhccCCCHHHHHHHHH---hcCCcHHH----------------HHHHHHHH
Confidence 888777777766654 33445666666666666666555554 33322222 22233333
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 042941 338 KMGCQPTNDTYIMLIKKFSRWRQFGNVFKVW 368 (481)
Q Consensus 338 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 368 (481)
..+ +..+.+++...|...++++.-++..
T Consensus 276 ~~n---~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 276 NHN---NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp TTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 333 3467888888888888876544444
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.42 E-value=0.00042 Score=57.34 Aligned_cols=121 Identities=10% Similarity=-0.051 Sum_probs=77.6
Q ss_pred HhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-HHhHHHHHHHHHcCCC
Q 042941 75 LGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG-IEDFQGLLSALCRYKN 153 (481)
Q Consensus 75 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~ 153 (481)
..+.|++++|+..+++.++. +|.+...+..+...++..|++++|...++...+.. |+ ...+..+...+...+.
T Consensus 6 aL~~G~l~eAl~~l~~al~~----~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~ 79 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA----SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQA 79 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccc
Confidence 45678999999999998887 55568889999999999999999999999988754 33 3444444444433333
Q ss_pred hhhHHHHHhh-ccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 042941 154 VQDAEHLMFC-NKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR 202 (481)
Q Consensus 154 ~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 202 (481)
.+++..-... .....+++..........+. ..|+.++|...++++.+.
T Consensus 80 ~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~-~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 80 RKDFAQGAATAKVLGENEELTKSLVSFNLSM-VSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHTTSCCCEECCCSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHhhhhhcccCchHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhc
Confidence 3332221111 11112233333444455556 778888888888877665
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.36 E-value=0.00013 Score=60.55 Aligned_cols=123 Identities=8% Similarity=0.031 Sum_probs=65.7
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHH
Q 042941 113 YCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREA 192 (481)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 192 (481)
..+.|++++|+..+++.++.. +-+...+..+...++..|++++|...|+......|.+...+..+...+. ..+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~-a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK-AAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-hccccHHH
Confidence 345677777777777777654 3366677777777777777777777777654433333444443333333 22222222
Q ss_pred HHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042941 193 ERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM 237 (481)
Q Consensus 193 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 237 (481)
......-...+.+++...+......+...|+.++|...+.++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 111111001111122233334445566667777777777666654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=0.00013 Score=67.13 Aligned_cols=133 Identities=8% Similarity=-0.105 Sum_probs=77.8
Q ss_pred cCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 042941 186 IGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISL 265 (481)
Q Consensus 186 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 265 (481)
.+.++.++..+....+.. .++...+..+...+.+.|+.+.|...+....... ...++..+...+...|++++|...
T Consensus 99 ~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~ 174 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESY 174 (497)
T ss_dssp HHHHHHHHHHHTC--------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHH
Confidence 344555555544333321 1244566777788888999999988877765532 235677888999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 042941 266 MKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIR 324 (481)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 324 (481)
|++..+..+. +..+|+.+...+...|+..+|...|.+..... .|-..++..|...+.
T Consensus 175 y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 175 YRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence 9999988554 77899999999999999999999999988764 356666666665543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.14 E-value=0.0023 Score=47.36 Aligned_cols=86 Identities=6% Similarity=-0.030 Sum_probs=44.7
Q ss_pred hcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042941 185 IIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKA----------RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALA 254 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (481)
+.+.+++|...|+...+..+. +..++..+..++... +.+++|+..|+...+.+ +.+..+|..+..+|.
T Consensus 9 r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHH
Confidence 344556666666666555322 444555555544432 33455666666666553 345555655555554
Q ss_pred cCCC-----------hHHHHHHHHHHHHc
Q 042941 255 KGRL-----------VKDAISLMKSMEEK 272 (481)
Q Consensus 255 ~~g~-----------~~~a~~~~~~~~~~ 272 (481)
..|+ ++.|.+.|++..+.
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 4332 34555555555543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.99 E-value=0.0014 Score=48.53 Aligned_cols=127 Identities=12% Similarity=0.071 Sum_probs=75.2
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHH
Q 042941 113 YCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREA 192 (481)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 192 (481)
|-+.+.+++|+..|+...+.. +.++.++..+..++...+++..+.. ..+.+++|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e-------------------------~~~~~~~A 60 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISD-------------------------AKQMIQEA 60 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHH-------------------------HHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhH-------------------------HHHHHHHH
Confidence 345566788888888877765 3456667667666665544433221 12334556
Q ss_pred HHHHHHHHhcCCcccHHhHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHH
Q 042941 193 ERVWMEMSQRGICYDVVSFSCIISCYSKAR-----------NLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKD 261 (481)
Q Consensus 193 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (481)
+..|++..+..+. +..+|..+..+|...| .+++|.+.|+...+. .|+...|..-+..+ .+
T Consensus 61 i~~~~kAl~l~P~-~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~k 131 (145)
T d1zu2a1 61 ITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AK 131 (145)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HT
T ss_pred HHHHHHHHHhcch-hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HH
Confidence 6666666655332 4455665665555443 357788888888775 46666665544443 45
Q ss_pred HHHHHHHHHHcCC
Q 042941 262 AISLMKSMEEKGV 274 (481)
Q Consensus 262 a~~~~~~~~~~~~ 274 (481)
|.+++.++.+.|+
T Consensus 132 a~~~~~e~~k~~~ 144 (145)
T d1zu2a1 132 APQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHhc
Confidence 6667776666553
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.71 E-value=0.021 Score=42.50 Aligned_cols=92 Identities=13% Similarity=0.024 Sum_probs=58.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC-CC----------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-----CCCCC-
Q 042941 215 ISCYSKARNLHKVLRLFDQMKRMGI-EC----------DRKVYNAVIHALAKGRLVKDAISLMKSMEEK-----GVAPN- 277 (481)
Q Consensus 215 l~~~~~~~~~~~a~~~~~~~~~~~~-~~----------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~- 277 (481)
...+...|++++|+..|++..+... .| ....|+.+..+|.+.|++++|...+++..+. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 3345556777777777776665210 11 1345677777788888888888777776542 11111
Q ss_pred ----hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 278 ----VVTYNSLIKPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 278 ----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 306 (481)
...++.+..+|...|++++|+..|++..+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12456667788888999999888887654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.71 E-value=0.022 Score=42.41 Aligned_cols=97 Identities=13% Similarity=0.078 Sum_probs=69.4
Q ss_pred hHHHH--HHHHHHhcCCHHHHHHHHHHHHhcCCc-c----------cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 042941 174 SFNII--LNGWCNIIGSSREAERVWMEMSQRGIC-Y----------DVVSFSCIISCYSKARNLHKVLRLFDQMKRM--- 237 (481)
Q Consensus 174 ~~~~l--~~~~~~~~~~~~~a~~~~~~~~~~g~~-~----------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 237 (481)
+|..+ ...+. ..|++++|+..|++..+.... | ....|+.+..+|.+.|++++|...++...+.
T Consensus 9 a~~~l~~g~~~~-~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 9 AYLALSDAQRQL-VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 44444 44455 678899999988887653111 1 1356888889999999999999988887652
Q ss_pred --CCCCC-----HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 042941 238 --GIECD-----RKVYNAVIHALAKGRLVKDAISLMKSMEE 271 (481)
Q Consensus 238 --~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (481)
...++ ...+..+..+|...|++++|...|++..+
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122 23566788899999999999999998765
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.64 E-value=0.014 Score=39.15 Aligned_cols=80 Identities=5% Similarity=-0.094 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcC---CCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHH
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGG---ETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIE 139 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 139 (481)
.+...+-.+...+.+.|++++|...|++..+. ...+......++..+..++.+.|++++|+..++++.+..+ -++.
T Consensus 3 Lsaddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P-~~~~ 81 (95)
T d1tjca_ 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP-EHQR 81 (95)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc-CCHH
Confidence 35566667888888888888888888876542 1122222356788888888888888888888888887542 2344
Q ss_pred hHHH
Q 042941 140 DFQG 143 (481)
Q Consensus 140 ~~~~ 143 (481)
+++.
T Consensus 82 a~~N 85 (95)
T d1tjca_ 82 ANGN 85 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.46 E-value=0.016 Score=38.78 Aligned_cols=60 Identities=15% Similarity=0.013 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 213 CIISCYSKARNLHKVLRLFDQMKRMG-----IECD-RKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 213 ~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
.+...+.+.|++++|...|++..+.. ..++ ..++..+..++.+.|++++|...++++.+.
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 44555555666666666555554321 0111 234555555666666666666666665554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.18 E-value=0.1 Score=35.96 Aligned_cols=141 Identities=15% Similarity=0.084 Sum_probs=89.1
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHH
Q 042941 253 LAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGL 332 (481)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~ 332 (481)
+.-.|..++..+++.+..+. .+..-||.+|.-....-+-+....+++.+-+- -|. +.|.....+...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl-------s~C~Nlk~vv~C 78 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL-------DKCQNLKSVVEC 78 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG-------GGCSCTHHHHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCc-------hhhhcHHHHHHH
Confidence 34457777777777777664 35566777776666666666666665554221 110 001111111111
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042941 333 LESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLL 412 (481)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 412 (481)
+ ... ..+...++..++....+|+-++..++++.+.+. -+|++...-.+..+|.+-|...++-+++.+.-++|++
T Consensus 79 ~---~~~--n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 79 G---VIN--NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp H---HHT--TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred H---HHh--cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 1 111 234456677788888889999998998887764 3567788888888999999999999999998888764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.83 E-value=0.15 Score=35.06 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC
Q 042941 211 FSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGV 274 (481)
Q Consensus 211 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 274 (481)
+...++....+|+-+...++++.+.+.+ ++++...-.+..+|-+.|...++.+++.+.-+.|+
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 3444555555555555555555554433 45555555555556666666555555555555554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.82 E-value=0.41 Score=33.87 Aligned_cols=112 Identities=7% Similarity=0.039 Sum_probs=66.6
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChHHH
Q 042941 187 GSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAK----GRLVKDA 262 (481)
Q Consensus 187 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a 262 (481)
.++++|...|++..+.|.. .....+. .....+.++|..+++...+.| ++..+..|...|.. ..+.++|
T Consensus 7 kd~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHH
Confidence 3566777777776666522 2222222 233456777777777777765 34444445555543 3467788
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 042941 263 ISLMKSMEEKGVAPNVVTYNSLIKPLCK----ARKLDEARQAFDEMLQRGI 309 (481)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~ 309 (481)
.+.|++..+.| +......|-..|.. ..+.++|..+|+...+.|.
T Consensus 79 ~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 79 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 88888777764 33444445555544 3567788888887777653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.99 E-value=0.64 Score=32.75 Aligned_cols=81 Identities=9% Similarity=0.037 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCC
Q 042941 187 GSSREAERVWMEMSQRGICYDVVSFSCIISCYSK----ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAK----GRL 258 (481)
Q Consensus 187 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 258 (481)
.+.++|.+.+++..+.| +......|...|.. ..+.++|.++|+...+.| ++.....|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 34455555555555443 22233333333332 345666666666666655 33334444444443 345
Q ss_pred hHHHHHHHHHHHHcC
Q 042941 259 VKDAISLMKSMEEKG 273 (481)
Q Consensus 259 ~~~a~~~~~~~~~~~ 273 (481)
.++|.+.|+...+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 666666666666554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.46 E-value=0.74 Score=31.75 Aligned_cols=80 Identities=14% Similarity=0.059 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 042941 342 QPTNDTYIMLIKKFSRWR---QFGNVFKVWNEISENGNGPD-RSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417 (481)
Q Consensus 342 ~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 417 (481)
.++..+--....++.+.. ++++++.+++.+.+.+. .+ ...+-.|..+|.+.|++++|.++++.+.+ +.|+..-
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p-~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~q 108 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 108 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcHH
Confidence 455555555666666554 46789999999887532 23 34666788899999999999999999987 5677665
Q ss_pred HHHHHHH
Q 042941 418 DELLQDW 424 (481)
Q Consensus 418 ~~~l~~~ 424 (481)
...+...
T Consensus 109 A~~L~~~ 115 (124)
T d2pqrb1 109 VGALKSM 115 (124)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.32 E-value=0.77 Score=29.81 Aligned_cols=61 Identities=10% Similarity=0.074 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHH
Q 042941 119 VGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIIL 179 (481)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 179 (481)
.=++.+.++.+...++.|++....+.+++|-+.+++..|.++|+.++....++...|..++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil 82 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3344555555555556666666666666666666666666666655443333333444433
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.42 E-value=1.8 Score=28.08 Aligned_cols=64 Identities=14% Similarity=0.007 Sum_probs=47.4
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 042941 360 QFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDW 424 (481)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 424 (481)
+.-++.+-++.+...++.|++.+..+.+.+|.|.+++..|.++++-.+.+ +.++...|..++.-
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqe 84 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 84 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHH
Confidence 44566777777777788888888888888888888888888888877765 33445566655543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.45 E-value=5.1 Score=27.39 Aligned_cols=49 Identities=8% Similarity=0.032 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042941 189 SREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM 237 (481)
Q Consensus 189 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 237 (481)
.++++.+++.+...+..-....+-.+.-+|.+.|++++|.+.++.+.+.
T Consensus 54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 3455555555554322111234444455566666666666666666654
|