Citrus Sinensis ID: 042947

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------
MGIGEEENPLLLSSIYENETPPHLQEISNDDSLVSKTWKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHLGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQYHMLGIYMQRSWIVLFICSFLLIPMFVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIAWVSGCALLVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTVCGGCPLTWTGFSAQAFVGLWEFFKLSVASGVMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNANGAKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVGVPLGVFLGWLLHFDIRGIWTGMISGTVVQTVILCVITIKCEWQKEAQKARLHILDEVASD
cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHEEEccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccc
cccHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHccccHHHHHHHEEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccc
mgigeeenplllssiyenetpphlqeisnddslvSKTWKESKKLWQIagpsifsrpamfSMTFVTQAFAGHLGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQYHMLGIYMQRSWIVLFICSFLlipmfvfaspllkligqptsvaeQTGIFAVWlipfhlclpfQFTLQRFLQSQLKTAVIAWVSGCALLVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTvcggcpltwtgfSAQAFVGLWEFFKLSVASGVMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVfswesmiplgfLAATGVRVANelgagnangAKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVGVPLGVFLGWLLHFDIRGIWTGMISGTVVQTVILCVITIKCEWQKEAQKARLHILDEVASD
mgigeeenPLLLSSIYENETPPHLQEISNDDSLVSKTWKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHLGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQYHMLGIYMQRSWIVLFICSFLLIPMFVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIAWVSGCALLVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTVCGGCPLTWTGFSAQAFVGLWEFFKLSVASGVMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNANGAKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVGVPLGVFLGWLLHFDIRGIWTGMISGTVVQTVILCVITIKCEWQKEAQKARLHILDEVASD
MGIGEEENPLLLSSIYENETPPHLQEISNDDSLVSKTWKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHLGDLNLaaisiattviisisFGFLLGMASALETLCGQAYGAKQYHMLGIYMQRSWIVLFICSFLLIPMFVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIAWVSGCALLVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTVCGGCPLTWTGFSAQAFVGLWEFFKLSVASGVMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVanelgagnangaKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVGVPLGVFLGWLLHFDIRGIWTGMISGTVVQTVILCVITIKCEWQKEAQKARLHILDEVASD
************************************TWKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHLGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQYHMLGIYMQRSWIVLFICSFLLIPMFVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIAWVSGCALLVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTVCGGCPLTWTGFSAQAFVGLWEFFKLSVASGVMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNANGAKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVGVPLGVFLGWLLHFDIRGIWTGMISGTVVQTVILCVITIKCEWQKEAQKARLHIL******
*******************************SLVSKTWKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHLGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQYHMLGIYMQRSWIVLFICSFLLIPMFVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIAWVSGCALLVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTVCGGCPLTWTGFSAQAFVGLWEFFKLSVASGVMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNANGAKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVGVPLGVFLGWLLHFDIRGIWTGMISGTVVQTVILCVITIKCEWQKEAQK************
MGIGEEENPLLLSSIYENETPPHLQEISNDDSLVSKTWKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHLGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQYHMLGIYMQRSWIVLFICSFLLIPMFVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIAWVSGCALLVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTVCGGCPLTWTGFSAQAFVGLWEFFKLSVASGVMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNANGAKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVGVPLGVFLGWLLHFDIRGIWTGMISGTVVQTVILCVITIKCEWQKEAQKARLHILDEVASD
**************************ISNDDSLVSKTWKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHLGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQYHMLGIYMQRSWIVLFICSFLLIPMFVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIAWVSGCALLVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTVCGGCPLTWTGFSAQAFVGLWEFFKLSVASGVMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNANGAKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVGVPLGVFLGWLLHFDIRGIWTGMISGTVVQTVILCVITIKCEWQKEAQKARLHILD*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
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MGIGEEENPLLLSSIYENETPPHLQEISNDDSLVSKTWKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHLGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQYHMLGIYMQRSWIVLFICSFLLIPMFVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIAWVSGCALLVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTVCGGCPLTWTGFSAQAFVGLWEFFKLSVASGVMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNANGAKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVGVPLGVFLGWLLHFDIRGIWTGMISGTVVQTVILCVITIKCEWQKEAQKARLHILDEVASD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query487 2.2.26 [Sep-21-2011]
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.983 0.944 0.405 6e-97
Q9LUH2477 MATE efflux family protei no no 0.911 0.930 0.335 7e-63
Q9LUH3469 MATE efflux family protei no no 0.889 0.923 0.336 9e-63
Q9SIA1477 MATE efflux family protei no no 0.946 0.966 0.314 1e-62
Q8RWF5483 MATE efflux family protei no no 0.965 0.973 0.323 3e-62
Q8GXM8476 MATE efflux family protei no no 0.926 0.947 0.321 2e-60
Q9SIA4476 MATE efflux family protei no no 0.938 0.960 0.343 3e-60
Q9SIA5476 MATE efflux family protei no no 0.893 0.913 0.323 1e-58
Q9SIA3476 MATE efflux family protei no no 0.930 0.951 0.319 1e-56
Q5RFD2570 Multidrug and toxin extru yes no 0.885 0.756 0.311 1e-47
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function desciption
 Score =  355 bits (910), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 200/493 (40%), Positives = 298/493 (60%), Gaps = 14/493 (2%)

Query: 1   MGIGEEENPLLL-----SSIYENETPPHLQEISNDDSLVSKTWK------ESKKLWQIAG 49
           M   E   PLL      S I E  +P   + +    S V+  W       ESK LW ++G
Sbjct: 1   MSSTETYEPLLTRLHSDSQITERSSPEIEEFLRRRGSTVTPRWWLKLAVWESKLLWTLSG 60

Query: 50  PSIFSRPAMFSMTFVTQAFAGHLGDLNLAAISIATTVIISISFGFLLGMASALETLCGQA 109
            SI      + ++FVT  F GHLG L LA  SIAT  I  +++G +LGMASA++T+CGQA
Sbjct: 61  ASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQA 120

Query: 110 YGAKQYHMLGIYMQRSWIVLFICSFLLIPMFVFASPLLKLIGQPTSVAEQTGIFAVWLIP 169
           YGA+QY  +GI  QR+ ++    +  L  ++ ++ P+LK +GQ  ++A +  IFA  +IP
Sbjct: 121 YGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIP 180

Query: 170 FHLCLPFQFTLQRFLQSQLKTAVIAWVSGCALLVHVIVSWVFVYKLRVGLVGTAITLDFS 229
                     +QRFLQ+Q     +A++S    L+H +++W+    L  GL+G A+ L FS
Sbjct: 181 QIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFS 240

Query: 230 WWL--SVLGLFLYTVCGGCPLTWTGFSAQAFVGLWEFFKLSVASGVMLLLENIYYRVLII 287
           WWL  +V G+++  +   C  TWTGFS +AF G+W +FKL+VAS VML LE  Y + L+I
Sbjct: 241 WWLLVAVNGMYIL-MSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVI 299

Query: 288 VSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNANGAKFAAIVSV 347
           +SG + N  +++DA+SIC+   +W+    LG  AA  VRV+NELGAGN   A  + +V  
Sbjct: 300 ISGLLSNPTISLDAISICMYYLNWDMQFMLGLSAAISVRVSNELGAGNPRVAMLSVVVVN 359

Query: 348 LNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAV 407
           + ++L+      I++     L+K FTS   VI  V++L  LLA +I LN IQP+L+GVA+
Sbjct: 360 ITTVLISSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPILSGVAI 419

Query: 408 GSGWQALVAFVNIGSYYIVGVPLGVFLGWLLHFDIRGIWTGMISGTVVQTVILCVITIKC 467
           GSGWQA+VA+VN+ +YY++G+P+G  LG+     + GIW GMI+G ++QT+ L V+T+K 
Sbjct: 420 GSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIAGVILQTLTLIVLTLKT 479

Query: 468 EWQKEAQKARLHI 480
            W  E + A   +
Sbjct: 480 NWTSEVENAAQRV 492
May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q5RFD2|S47A1_PONAB Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query487
224082049475 predicted protein [Populus trichocarpa] 0.969 0.993 0.778 0.0
255545862490 multidrug resistance pump, putative [Ric 0.989 0.983 0.756 0.0
147777076528 hypothetical protein VITISV_025689 [Viti 0.985 0.909 0.749 0.0
359492471484 PREDICTED: protein TRANSPARENT TESTA 12- 0.985 0.991 0.749 0.0
356510147517 PREDICTED: protein TRANSPARENT TESTA 12- 0.950 0.895 0.691 0.0
357465155 593 Protein TRANSPARENT TESTA [Medicago trun 0.971 0.797 0.693 0.0
224097194488 predicted protein [Populus trichocarpa] 0.956 0.954 0.627 1e-170
356497726491 PREDICTED: protein TRANSPARENT TESTA 12- 0.977 0.969 0.610 1e-169
224067013492 predicted protein [Populus trichocarpa] 0.985 0.975 0.627 1e-168
359492469490 PREDICTED: protein TRANSPARENT TESTA 12- 0.952 0.946 0.636 1e-167
>gi|224082049|ref|XP_002306557.1| predicted protein [Populus trichocarpa] gi|222856006|gb|EEE93553.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  756 bits (1951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/474 (77%), Positives = 420/474 (88%), Gaps = 2/474 (0%)

Query: 1   MGIGEEENPLLLSSIYENETPPHLQEISN--DDSLVSKTWKESKKLWQIAGPSIFSRPAM 58
           MG+GEEENPLLLS +  N        +S+    S + + W ESK+LWQIAGPSIFSR AM
Sbjct: 1   MGVGEEENPLLLSGLEANTQRHQQVHLSSGVSSSTIKEIWLESKELWQIAGPSIFSRLAM 60

Query: 59  FSMTFVTQAFAGHLGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQYHML 118
           FSMT +TQ+FAGHLGDLNLA+ISIATT+IISISFGFLLGMASALETLCG+AYGAKQYHML
Sbjct: 61  FSMTVITQSFAGHLGDLNLASISIATTLIISISFGFLLGMASALETLCGRAYGAKQYHML 120

Query: 119 GIYMQRSWIVLFICSFLLIPMFVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQF 178
           GIYMQRSWIVLF+CS +L+P+F+FA+P+LKLIGQP  +AEQTG+ A+WLIPFH   PFQF
Sbjct: 121 GIYMQRSWIVLFLCSIMLLPLFLFATPILKLIGQPADIAEQTGLVAIWLIPFHFSFPFQF 180

Query: 179 TLQRFLQSQLKTAVIAWVSGCALLVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLF 238
           TLQRFLQSQLKT VIA VSG ALL+HVI+SWVFVYKLRVG+VGTA+TLDFSWW+SV G+F
Sbjct: 181 TLQRFLQSQLKTGVIALVSGGALLIHVILSWVFVYKLRVGIVGTALTLDFSWWVSVFGMF 240

Query: 239 LYTVCGGCPLTWTGFSAQAFVGLWEFFKLSVASGVMLLLENIYYRVLIIVSGYMHNTEVA 298
           +Y VCGGC L+WTGFS QAF GLWEFFKLS+ASG+MLLLENIYYRVLI VSG++HNT+VA
Sbjct: 241 IYCVCGGCQLSWTGFSTQAFTGLWEFFKLSLASGIMLLLENIYYRVLITVSGFVHNTKVA 300

Query: 299 VDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNANGAKFAAIVSVLNSLLVGLCFL 358
           VDALSICVT+ SWESMIPLGFLAATGVRVANELGAGNA GAKFA IVS+L SL+VGL F 
Sbjct: 301 VDALSICVTILSWESMIPLGFLAATGVRVANELGAGNAKGAKFATIVSLLTSLVVGLLFW 360

Query: 359 SIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFV 418
           SI+IA PEKLA IFTSS  VI MVNELA+LLAFTILLNCIQPVL+GVA+GSGWQALVA++
Sbjct: 361 SIVIAFPEKLAMIFTSSSFVILMVNELAVLLAFTILLNCIQPVLSGVAIGSGWQALVAYI 420

Query: 419 NIGSYYIVGVPLGVFLGWLLHFDIRGIWTGMISGTVVQTVILCVITIKCEWQKE 472
           NIGSYYIVGVPLG  LGWLLHF I+G+W GMI GTVVQT++L V+T+KCEW+KE
Sbjct: 421 NIGSYYIVGVPLGFLLGWLLHFGIKGLWAGMICGTVVQTLVLSVVTMKCEWEKE 474

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255545862|ref|XP_002513991.1| multidrug resistance pump, putative [Ricinus communis] gi|223547077|gb|EEF48574.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147777076|emb|CAN67847.1| hypothetical protein VITISV_025689 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359492471|ref|XP_002285725.2| PREDICTED: protein TRANSPARENT TESTA 12-like [Vitis vinifera] gi|302142015|emb|CBI19218.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356510147|ref|XP_003523801.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max] Back     alignment and taxonomy information
>gi|357465155|ref|XP_003602859.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355491907|gb|AES73110.1| Protein TRANSPARENT TESTA [Medicago truncatula] Back     alignment and taxonomy information
>gi|224097194|ref|XP_002310871.1| predicted protein [Populus trichocarpa] gi|222853774|gb|EEE91321.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356497726|ref|XP_003517710.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max] Back     alignment and taxonomy information
>gi|224067013|ref|XP_002302326.1| predicted protein [Populus trichocarpa] gi|222844052|gb|EEE81599.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359492469|ref|XP_002285728.2| PREDICTED: protein TRANSPARENT TESTA 12-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query487
TAIR|locus:2168210486 AT5G65380 "AT5G65380" [Arabido 0.940 0.942 0.552 2.4e-140
TAIR|locus:2142544489 AT5G10420 [Arabidopsis thalian 0.924 0.920 0.521 4.8e-133
TAIR|locus:2172477491 AT5G44050 "AT5G44050" [Arabido 0.991 0.983 0.485 6.4e-131
TAIR|locus:2015368484 AT1G47530 "AT1G47530" [Arabido 0.944 0.950 0.446 1e-109
TAIR|locus:2037960494 AT1G33080 "AT1G33080" [Arabido 0.905 0.892 0.460 1.9e-106
TAIR|locus:2206960494 AT1G33110 "AT1G33110" [Arabido 0.956 0.943 0.428 8.6e-104
TAIR|locus:2037980494 AT1G33090 "AT1G33090" [Arabido 0.928 0.914 0.434 2.3e-103
TAIR|locus:2089955506 AT3G21690 "AT3G21690" [Arabido 0.897 0.863 0.438 4.4e-100
TAIR|locus:2144421498 AT5G38030 "AT5G38030" [Arabido 0.956 0.935 0.409 3.1e-99
TAIR|locus:2088822500 AT3G26590 "AT3G26590" [Arabido 0.956 0.932 0.402 5e-99
TAIR|locus:2168210 AT5G65380 "AT5G65380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1373 (488.4 bits), Expect = 2.4e-140, P = 2.4e-140
 Identities = 254/460 (55%), Positives = 327/460 (71%)

Query:    22 PHLQEISNDDSLVSKTWKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHLGDLNLXXXX 81
             PH  E  + + L  +   E+KKLWQI GP+IFSR   +SM  +TQAFAGHLGDL L    
Sbjct:    20 PHTAE-EDGEGLKDRILVETKKLWQIVGPAIFSRVTTYSMLVITQAFAGHLGDLELAAIS 78

Query:    82 XXXXXXXXXXFGFLLGMASALETLCGQAYGAKQYHMLGIYMQRSWIVLFICSFLLIPMFV 141
                       FG LLGMASALETLCGQA+GAK+YHMLG+YMQRSWIVLF C  LL+P ++
Sbjct:    79 IVNNVTVGFNFGLLLGMASALETLCGQAFGAKKYHMLGVYMQRSWIVLFFCCVLLLPTYI 138

Query:   142 FASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIAWVSGCAL 201
             F +P+LK +GQP  +AE +G+ A+W+IP H      F LQRFLQ QLK  V A+ +  AL
Sbjct:   139 FTTPVLKFLGQPDDIAELSGVVAIWVIPLHFAFTLSFPLQRFLQCQLKNRVTAYAAAVAL 198

Query:   202 LVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTVCGGCPLTWTGFSAQAFVGL 261
             +VH++V W+FV  L++G+VGT  T+  SWW++VL L +Y+ CGGCPLTWTG S++A  GL
Sbjct:   199 VVHILVCWLFVDGLKLGVVGTVATISISWWVNVLILLVYSTCGGCPLTWTGLSSEALTGL 258

Query:   262 WEFFKLSVASGVMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLA 321
             WEF KLS +SGVML LEN YYR+LII++G + N  +AVD+LSIC+ +  WE MIPL F A
Sbjct:   259 WEFLKLSASSGVMLCLENWYYRILIIMTGNLQNARIAVDSLSICMAINGWEMMIPLAFFA 318

Query:   322 ATGVRVXXXXXXXXXXXXKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITM 381
              TGVRV            +FA IVSV  SL++GL F  +I+    ++A IF+SS AV+  
Sbjct:   319 GTGVRVANELGAGNGKGARFATIVSVTQSLIIGLFFWVLIMLLHNQIAWIFSSSVAVLDA 378

Query:   382 VNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVGVPLGVFLGWLLHFD 441
             VN+L++LLAFT+LLN +QPVL+GVAVGSGWQ+ VA++N+G YY +GVPLG  +GW     
Sbjct:   379 VNKLSLLLAFTVLLNSVQPVLSGVAVGSGWQSYVAYINLGCYYCIGVPLGFLMGWGFKLG 438

Query:   442 IRGIWTGMI-SGTVVQTVILCVITIKCEWQKEAQKARLHI 480
             + GIW GMI  GT VQT+IL  IT++C+W+KEAQKA   I
Sbjct:   439 VMGIWGGMIFGGTAVQTMILSFITMRCDWEKEAQKASARI 478
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0009835 "fruit ripening" evidence=ISS
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
TAIR|locus:2142544 AT5G10420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172477 AT5G44050 "AT5G44050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015368 AT1G47530 "AT1G47530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037960 AT1G33080 "AT1G33080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206960 AT1G33110 "AT1G33110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037980 AT1G33090 "AT1G33090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089955 AT3G21690 "AT3G21690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144421 AT5G38030 "AT5G38030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088822 AT3G26590 "AT3G26590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_V4674
hypothetical protein (475 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.V.3697.1
hypothetical protein (426 aa)
  •     0.442
estExt_Genewise1_v1.C_LG_IX1583
hypothetical protein (460 aa)
  •     0.416

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query487
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-150
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 3e-52
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 4e-49
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 1e-47
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 1e-36
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 2e-33
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 1e-29
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 9e-28
pfam01554161 pfam01554, MatE, MatE 3e-26
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 1e-24
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 1e-22
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 3e-22
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 6e-21
pfam01554161 pfam01554, MatE, MatE 4e-20
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 5e-20
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 5e-16
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 3e-09
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 9e-09
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 1e-08
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 7e-08
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 2e-07
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 1e-05
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 1e-04
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 2e-04
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 6e-04
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 8e-04
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 0.001
cd12082 420 cd12082, MATE_like, Multidrug and toxic compound e 0.003
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  434 bits (1118), Expect = e-150
 Identities = 171/437 (39%), Positives = 275/437 (62%), Gaps = 2/437 (0%)

Query: 40  ESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHLGDLNLAAISIATTVIISISFGFLLGMA 99
           E+KKL ++A P + +    +S++ V+  F GHLG L LAA S+A++      F  LLG+A
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 100 SALETLCGQAYGAKQYHMLGIYMQRSWIVLFICSFLLIPMFVFASPLLKLIGQPTSVAEQ 159
           SAL+TLCGQA+GAK Y ++G+Y+QR+ ++L +C   +  +++   P+L L+GQ   +A  
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 160 TGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIAWVSGCALLVHVIVSWVFVYKLRVGL 219
            G +  WLIP          L+R+LQ+Q     + ++S  ALL++++++++ V+ L +G 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 220 VGTAITLDFSWWLSVLGLFLYTVC-GGCPLTWTGFSAQAFVGLWEFFKLSVASGVMLLLE 278
           +G A+    S+WL V+ L LY     G   TW GFS +AF G   F KL++ S +ML LE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 279 NIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNANG 338
              + +L++++G +    VA+ A SIC+T  S   MIPLG   A  VRV NELGAGN   
Sbjct: 241 WWAFEILVLLAGLL-PGTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKR 299

Query: 339 AKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCI 398
           AK AAIV+++ SL++G+    +++   +  A +FTS   VI +V +L  +LA   + + +
Sbjct: 300 AKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGL 359

Query: 399 QPVLTGVAVGSGWQALVAFVNIGSYYIVGVPLGVFLGWLLHFDIRGIWTGMISGTVVQTV 458
           Q VL+GV  G G Q L A+VN+ +YY++G+P+G+ L ++L   ++G+W G+I+G ++Q V
Sbjct: 360 QAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIAGLILQAV 419

Query: 459 ILCVITIKCEWQKEAQK 475
           IL +I ++ +W KEA+K
Sbjct: 420 ILLLIILRTDWDKEAEK 436

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 487
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 100.0
PRK10459492 colanic acid exporter; Provisional 99.98
COG2244480 RfbX Membrane protein involved in the export of O- 99.96
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.9
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.89
PRK00187464 multidrug efflux protein NorA; Provisional 99.89
PRK10189 478 MATE family multidrug exporter; Provisional 99.88
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.88
PRK01766 456 multidrug efflux protein; Reviewed 99.87
TIGR01695502 mviN integral membrane protein MviN. This model re 99.82
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.8
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.79
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.75
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.75
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.72
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.71
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.71
PRK10459492 colanic acid exporter; Provisional 99.69
PRK15099416 O-antigen translocase; Provisional 99.67
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.62
COG2244480 RfbX Membrane protein involved in the export of O- 99.56
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.3
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.26
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 99.11
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.95
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.47
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.41
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.29
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.16
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.0
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.99
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.93
COG4267467 Predicted membrane protein [Function unknown] 97.81
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-57  Score=445.66  Aligned_cols=436  Identities=24%  Similarity=0.386  Sum_probs=411.7

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccccc
Q 042947           37 TWKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHLGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQYH  116 (487)
Q Consensus        37 ~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~~~  116 (487)
                      .++..|+++++++|++++++++.+++++|+.++||+|++++++.+++.++...+ +.+..|++.|.++.++|++|+||++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence            567899999999999999999999999999999999999999999999999865 6799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchhHHHH
Q 042947          117 MLGIYMQRSWIVLFICSFLLIPM-FVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIAW  195 (487)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  195 (487)
                      ++++..+++++++++++++.+++ +.+.++++.+++.++|+.+.+..|+++..++.|+..+...+.+.+|+.||+|.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            99999999999999999777765 89999999999998889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhh-cC-CccchHHHHHHHHHHHHHHHHHHHHHhcCC--cCccCCCCHHhHhhHHHHHHHHHHH
Q 042947          196 VSGCALLVHVIVSWVFVYK-LR-VGLVGTAITLDFSWWLSVLGLFLYTVCGGC--PLTWTGFSAQAFVGLWEFFKLSVAS  271 (487)
Q Consensus       196 ~~i~~~~~~i~l~~~li~~-~~-~gi~g~~~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~  271 (487)
                      .++++.++|+++|++|+++ ++ +|+.|+++||++++.+..++..+++.+++.  .....+..+.+++.+|++++.|.|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            9999999999999999998 46 999999999999999999999999888742  3332334355668999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 042947          272 GVMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNANGAKFAAIVSVLNSL  351 (487)
Q Consensus       272 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~  351 (487)
                      +++++.+...+...+.+.+++|  ++++|+|+++.++.++.++++.+++++..|.+++++|++|+|++++..+.+..+++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~  328 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL  328 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999  78899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCchhhHHHHHHHHHHHHhHHHH
Q 042947          352 LVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVGVPLG  431 (487)
Q Consensus       352 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~  431 (487)
                      .++...+++++++++++.++|++|+|+.+.+..++++.++..++++++.+..+.+|+.||+|.++++++.+.|.+.+|+.
T Consensus       329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~  408 (455)
T COG0534         329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA  408 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Q 042947          432 VFLGWLLHFDIRGIWTGMISGTVVQTVILCVITIKCEWQKEAQKA  476 (487)
Q Consensus       432 ~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~  476 (487)
                      +++..++ +|..|+|+++..++.+..++..++++|.+|+++..+.
T Consensus       409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (455)
T COG0534         409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAA  452 (455)
T ss_pred             HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence            9999877 8999999999999999999999999999998776543

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query487
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 4e-11
4huk_A459 Mate Transporter Norm-ng In Complex With Tpp And Mo 5e-06
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 106/473 (22%), Positives = 195/473 (41%), Gaps = 39/473 (8%)
Query: 31  DSLVSKTWKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHLGDLNLXXXXXXXXX-XXX 89
           ++ V +  KE+  L ++A P + +  A   M FV    AG +  +++             
Sbjct: 1   ENSVHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS 60
Query: 90  XXFGFLLGMASALETLCGQAYGAKQYHMLGIYMQRSWIVLFICSFLLIPMFVFASPLLKL 149
             FG  +G+  AL  +  Q  GA + H +   + +  I+  + S  +I +      +++ 
Sbjct: 61  ILFG--VGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRF 118
Query: 150 IGQPTSVAEQTGIF---AVWLIPFHLCLPFQFTLQRFLQSQLKTAVIAWVSGCALLVHVI 206
           +    ++A +T  +    ++ +P +L   FQ  L+ F      T     +    LL+++ 
Sbjct: 119 MDVEEAMATKTVGYMHAVIFAVPAYLL--FQ-ALRSFTDGMSLTKPAMVIGFIGLLLNIP 175
Query: 207 VSWVFVYKL----RVGLVGTAITLDFSWWLSVLGLFLYTVCG---GCPLTWTGFSAQAFV 259
           ++W+FVY       +G VG  +     +W+ +L L  Y V          +  F      
Sbjct: 176 LNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPK 235
Query: 260 GLWEFFKLSVASGVMLLLENIYYRVLIIVSGYMHNTEVAVD--ALSICVTVFSWESMIPL 317
            L   F+L       L  E   + V+ ++   + +T VA    AL+    VF    M P+
Sbjct: 236 ELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVF----MFPM 291
Query: 318 GFLAATGVRVXXXXXXXXXXXXKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPA 377
              AA  +RV              AA V ++  L        + +   E++A ++T +  
Sbjct: 292 SIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQV 351
Query: 378 VITMVNELAILLAFTILLNCIQPVLTGVAVGS--GWQALVAFVNIG--SYYIVGVPLGVF 433
           V+ +  +   LL F  +  C+  V   VA GS  G++ + A  +    SY+++G+P G  
Sbjct: 352 VVALAMQ---LLLFAAIYQCMDAVQV-VAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYI 407
Query: 434 LG---WLLH--FDIRGIWTGMISGTVVQTVILCVITIKCEW-QKEAQKARLHI 480
           LG   WL       +G W G I G     ++L     +  W QK++   +LH+
Sbjct: 408 LGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQ---RLYWLQKQSDDVQLHL 457
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody Length = 459 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query487
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 3e-74
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  240 bits (615), Expect = 3e-74
 Identities = 97/444 (21%), Positives = 185/444 (41%), Gaps = 15/444 (3%)

Query: 31  DSLVSKTWKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHLGDLNLAAISIATTVIISI 90
           ++ V +  KE+  L ++A P + +  A   M FV    AG +  +++AA+SIA ++ +  
Sbjct: 1   ENSVHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS 60

Query: 91  SFGFLLGMASALETLCGQAYGAKQYHMLGIYMQRSWIVLFICSFLLIPMFVFASPLLKLI 150
              F +G+  AL  +  Q  GA + H +   + +  I+  + S  +I +      +++ +
Sbjct: 61  -ILFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFM 119

Query: 151 GQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIAWVSGCALLVHVIVSWV 210
               ++A +T  +   +I           L+ F      T     +    LL+++ ++W+
Sbjct: 120 DVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWI 179

Query: 211 FVYKL----RVGLVGTAITLDFSWWLSVLGLFLYTVCGG---CPLTWTGFSAQAFVGLWE 263
           FVY       +G VG  +     +W+ +L L  Y V          +  F       L  
Sbjct: 180 FVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIR 239

Query: 264 FFKLSVASGVMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAAT 323
            F+L       L  E   + V+ ++   + +T VA  A  + +   S   M P+   AA 
Sbjct: 240 LFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVA--AHQVALNFSSLVFMFPMSIGAAV 297

Query: 324 GVRVANELGAGNANGAKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVN 383
            +RV ++LG  +  GA  AA V ++  L        + +   E++A ++T +  V+ +  
Sbjct: 298 SIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAM 357

Query: 384 ELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVGVPLGVFLGWL-----L 438
           +L +  A    ++ +Q V  G   G      +      SY+++G+P G  LG        
Sbjct: 358 QLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQ 417

Query: 439 HFDIRGIWTGMISGTVVQTVILCV 462
               +G W G I G     ++L  
Sbjct: 418 PLGAKGFWLGFIIGLSAAALMLGQ 441

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query487
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.84
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 87.54
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=2.3e-49  Score=396.43  Aligned_cols=431  Identities=22%  Similarity=0.353  Sum_probs=395.0

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccc
Q 042947           35 SKTWKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHLGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQ  114 (487)
Q Consensus        35 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~  114 (487)
                      ...++..|++++.++|.+++++...+.+.+|+.+++|+|++++|+++++.++.... ..+..|++.+..+.++|+.|++|
T Consensus         5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~   83 (460)
T 3mkt_A            5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGR   83 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence            34567899999999999999999999999999999999999999999999997754 55778999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchhHHH
Q 042947          115 YHMLGIYMQRSWIVLFICSFLLIPMFVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIA  194 (487)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  194 (487)
                      +++.++.+++++.+...+++++.++..+.++++.+++.+++..+.+..|++++.++.++..+.....+.+++.||++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~  163 (460)
T 3mkt_A           84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM  163 (460)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            99999999999999999998877777788888888888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhh-c---CCccchHHHHHHHHHHHHHHHHHHHHHhcCCcCc---cCCCCHHhHhhHHHHHHH
Q 042947          195 WVSGCALLVHVIVSWVFVYK-L---RVGLVGTAITLDFSWWLSVLGLFLYTVCGGCPLT---WTGFSAQAFVGLWEFFKL  267 (487)
Q Consensus       195 ~~~i~~~~~~i~l~~~li~~-~---~~gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  267 (487)
                      ..++++.++|++++++++.. +   ++|+.|+++++.+++.+..++..++.++++...+   ++++.+.+++.+|+++++
T Consensus       164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  243 (460)
T 3mkt_A          164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL  243 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence            99999999999999999975 3   6999999999999999999988888776622111   122223455789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 042947          268 SVASGVMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNANGAKFAAIVSV  347 (487)
Q Consensus       268 ~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~  347 (487)
                      +.|.+++++.....+.+++.+++++|  +.++|+|++++++.++..++..+++++..|.+++++|++|++++++..+++.
T Consensus       244 ~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~  321 (460)
T 3mkt_A          244 GFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGL  321 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999999999999999999999997  6778999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCchhhHHHHHHHHHHHHh
Q 042947          348 LNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVG  427 (487)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  427 (487)
                      +++..++++++++++++++++..+|++|+++.+.+..++++++++.++++++.+..+++++.||+|.+++.++++.|+++
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  401 (460)
T 3mkt_A          322 MTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLG  401 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh----hc-CCchhhhHHHHHHHHHHHHHHHHHHhhcc
Q 042947          428 VPLGVFLGWL----LH-FDIRGIWTGMISGTVVQTVILCVITIKCE  468 (487)
Q Consensus       428 i~l~~~l~~~----~~-~g~~G~~~a~~~~~~i~~~~~~~~~~~~~  468 (487)
                      +|+++++.+.    ++ +|..|+|+++.+++.+..++..++++|..
T Consensus       402 i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~  447 (460)
T 3mkt_A          402 LPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQ  447 (460)
T ss_dssp             HHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred             HHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999987    67 99999999999999999888776665543
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00