Citrus Sinensis ID: 043000

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630----
MAVMFQPWLLLLYILISVIPFSSCQPRNIETFYPFDPSSSPAPSPTITSDPPIITPLPPPRSPQLVPPPPSLSAPQSGSPSDNKTIAKAVAATAASTLFIAVLFFFALQRYVLRKRQRVGDGDHNNSNEGRPSNEFTRFDGNLRGLIVDENGLDVLYWRKLEEGDKRKGFDREILHSPRHEEEKEQGMSINKFEAVQEVPLLRGKSSSSHVKVQPENDDLDHIITSKPTTTPAPSALKTIQEKQPPIQQSNVPPPPPPIQNNKSTAAPPPPPPPPPQPVSAKKNPAPPPPPTSILKPPSVPKRSSNEGQLKDSSAETGNGNGHVKLKPLHWDKVNKNVEHSMVWDKIDGGSFRFDGDLMEALFGYVATNRRSPTRERNSKNSTGPNSQVILLDARKSQNTAIVLKSLALSRGELLSAILDGKELNPETLEKLTRVAPTKEEQSKILDFDGDPTRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSEIAQFKETLQTLELGCKELRTRGLLLKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDVKSTDGKTTLLHFVVEEVVRAEGRRCVINRNRSLSRSGSSRNSSSGSLTSENSTPKEEKEKEYMRLGLPVIGGLSAEFSNVKKAAT
cccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccHHHHHHHHcccccccccccccccccccccccccEEEEccHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHcccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHcc
ccHHHcHHHHHHHEHHEEccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEccccEEEEEEEccccEEEEEEEccccccccccEEEEEccccHHccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccHHHHHcccccEccHHHHHHHHHcccccccccccccccccccccccEEEEEcHHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHccccHHHccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccEEEEEHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHcccHHHcccHHHHHccHHHHHHHHHHHHccHHHHHHHHHccccEEccccHHHHHHHHHcc
MAVMFQPWLLLLYILISvipfsscqprnietfypfdpssspapsptitsdppiitplppprspqlvppppslsapqsgspsdnKTIAKAVAATAASTLFIAVLFFFALQRYVLRKrqrvgdgdhnnsnegrpsneftrfdgnlrglivdenglDVLYWRKleegdkrkgfdreilhsprheeekeqgmsinkfeavqevpllrgksssshvkvqpenddldhiitskptttpapsalktiqekqppiqqsnvppppppiqnnkstaapppppppppqpvsakknpappppptsilkppsvpkrssnegqlkdssaetgngnghvklkplhwdkvnknvEHSMVwdkidggsfrfdGDLMEALFGYvatnrrsptrernsknstgpnsqVILLDARKSQNTAIVLKSLALSRGELLSAIldgkelnpetLEKLtrvaptkeeqskildfdgdptrladaeSFHYHILKAVPSAYTRLNALLFRSNYDSEIAQFKETLQTLELGCKELRTRGLLLKLLEAILKAGNRmnagtargnAQAFNLTALRKlsdvkstdgkttLLHFVVEEVVRaegrrcvinrnrslsrsgssrnsssgsltsenstpkeekEKEYMRLGLPVIGGLSAEFSNVKKAAT
MAVMFQPWLLLLYILISVIPFSSCQPRNIETFYPFDPSSSPAPSPTITSDPPIITPLPPPRSPQLVPPPPSLSAPQSGSPSDNKTIAKAVAATAASTLFIAVLFFFALQRYVLRKrqrvgdgdhnnsnegrpsneftrfdGNLRglivdengldVLYWRkleegdkrkgfdreilhsprheeekeqgmsiNKFEAVQEVPLLRGKSSSSHVKVQPENDDLDHIITSKPTTTPAPSALKTIQEKQPPIQQSNVPPPPPPIQNNKSTAAPPPPPPPPPQPVSAKKNPAPPPPPtsilkppsvpkrsSNEGQLkdssaetgngnghvklkplhWDKVNKNVEHSMVWDKIDGGSFRFDGDLMEALFGyvatnrrsptrernsknstgpnsQVILLDARKSQNTAIVLKSLALSRGELLSAildgkelnpetLEKLtrvaptkeeqskildfdgdPTRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSEIAQFKETLQTLELGCKELRTRGLLLKLLEAILKAGNRMNAGTARGNAQAFNLTALRklsdvkstdgkttllhfvveevvraegrrcvinrnrslsrsgssrnsssgsltsenstpkeeKEKEYMRLGLPvigglsaefsnvkkaat
MAVMFQPWLLLLYILISVIPFSSCQPRNIETFYpfdpssspapsptitsdppiitplppprspqlvppppslsapqsgspsdNktiakavaataastlfiavLFFFALQRYVLRKRQRVGDGDHNNSNEGRPSNEFTRFDGNLRGLIVDENGLDVLYWRKLEEGDKRKGFDREILHSPRHEEEKEQGMSINKFEAVQEVPLLRGKSSSSHVKVQPENDDLDHIItskptttpapsalktIQEKqppiqqsnvppppppiqnnKSTAApppppppppqpvsakknpappppptsilkppsvpKRSSNEGQLKDSSAETGNGNGHVKLKPLHWDKVNKNVEHSMVWDKIDGGSFRFDGDLMEALFGYVATNRRSPTRERNSKNSTGPNSQVILLDARKSQNTAIVLKSLALSRGELLSAILDGKELNPETLEKLTRVAPTKEEQSKILDFDGDPTRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSEIAQFKETLQTLELGCkelrtrglllklleailkaGNRMNAGTARGNAQAFNLTALRKLSDVKSTDGKTTLLHFvveevvraegrrcvInrnrslsrsgssrnsssgsltsenstPKEEKEKEYMRLGLPVIGGLSAEFSNVKKAAT
**VMFQPWLLLLYILISVIPFSSCQPRNIETFYP****************************************************AKAVAATAASTLFIAVLFFFALQRYVLRK*********************TRFDGNLRGLIVDENGLDVLYWRKLE*****************************************************************************************************************************************************************VKLKPLHWDKVNKNVEHSMVWDKIDGGSFRFDGDLMEALFGYVAT*********************ILLDA***QNTAIVLKSLALSRGELLSAILDG*******************************TRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSEIAQFKETLQTLELGCKELRTRGLLLKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDVKSTDGKTTLLHFVVEEVVRAEGRRCVIN************************************LGLPVIGG*************
*****QPWLLLLYILISVIPFSSCQPRN*************************************************************VAATAASTLFIAVLFFFALQRYVL****************************NLRGLIVDENGLD*******************************************************************************************************************************************************************************HWDKVNKNVEHSMVWDKIDGGSFRFDGDLMEAL*****************************LDARKSQNTAIVLKSLALSRGELLSAILDGKELNPETLEKLTRVAPTKEEQSKILDFDGD*TRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSEIAQFKETLQTLELGCKELRTRGLLLKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDVKSTDGKTTLLHFVVEEVVRAEGRRCVINRNR***********************************LPVIGGLSAEFSNVKKA**
MAVMFQPWLLLLYILISVIPFSSCQPRNIETFYPFD**********ITSDPPIITPLPPPRS**********************TIAKAVAATAASTLFIAVLFFFALQRYVLRKRQRVGDGDHNNSNEGRPSNEFTRFDGNLRGLIVDENGLDVLYWRKLEEGDKRKGFDREILHSP*********MSINKFEAVQEVPLLR************ENDDLDHIITSKPTTTPAPSALKTIQEKQPPIQQSNVPPPPPPIQN****************************PPTSILKP*******************TGNGNGHVKLKPLHWDKVNKNVEHSMVWDKIDGGSFRFDGDLMEALFGYVATNR***************NSQVILLDARKSQNTAIVLKSLALSRGELLSAILDGKELNPETLEKLTRVAPTKEEQSKILDFDGDPTRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSEIAQFKETLQTLELGCKELRTRGLLLKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDVKSTDGKTTLLHFVVEEVVRAEGRRCVINRNR*****************************EYMRLGLPVIGGLSAEFSNVKKAAT
*AVMFQPWLLLLYILISVIPFSSCQPRNIETFYPFDPSSSPAPSPT*T***********************************KTIAKAVAATAASTLFIAVLFFFALQRYVLRKRQRV**********GRPSNEFTRFDGNLRGLIVDENGLDVLYWRKLEEGDKRKGFDREILHSPRHEEEKEQGMSINKFEAVQEVPL****************************************************************************************************************************LKPLHWDKVNKNVEHSMVWDKIDGGSFRFDGDLMEALFGYVAT****************PNSQVILLDARKSQNTAIVLKSLALSRGELLSAILDGKELNPETLEKLTRVAPTKEEQSKILDFDGDPTRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSEIAQFKETLQTLELGCKELRTRGLLLKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDVKSTDGKTTLLHFVVEEVVRAEGRRCVINRNRS************G**T*ENSTPKEEKEKEYMRLGLPVIGGLSAEFSNVKKA**
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAVMFQPWLLLLYILISVIPFSSCQPRNIETFYPFDPSSSPAPSPTITSDPPIITPLPPPRSPQLVPPPPSLSAPQSGSPSDNKTIAKAVAATAASTLFIAVLFFFALQRYVLRKRQRVGDGDHNNSNEGRPSNEFTRFDGNLRGLIVDENGLDVLYWRKLEEGDKRKGFDREILHSPRHEEEKEQGMSINKFEAVQEVPLLRGKSSSSHVKVQPENDDLDHIITSKPTTTPAPSALKTIQEKQPPIQQSNVPPPPPPIQNNKSTAAPPPPPPPPPQPVSAKKNPAPPPPPTSILKPPSVPKRSSNEGQLKDSSAETGNGNGHVKLKPLHWDKVNKNVEHSMVWDKIDGGSFRFDGDLMEALFGYVATNRRSPTRERNSKNSTGPNSQVILLDARKSQNTAIVLKSLALSRGELLSAILDGKELNPETLEKLTRVAPTKEEQSKILDFDGDPTRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSExxxxxxxxxxxxxxxxxxxxxGLLLKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDVKSTDGKTTLLHFVVEEVVRAEGRRCVINRNRSLSRSGSSRNSSSGSLTSENSTPKEEKEKEYMRLGLPVIGGLSAEFSNVKKAAT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query634 2.2.26 [Sep-21-2011]
O04532 760 Formin-like protein 8 OS= yes no 0.914 0.763 0.503 1e-150
O48682 763 Formin-like protein 4 OS= no no 0.917 0.762 0.5 1e-141
Q9XIE0 929 Formin-like protein 7 OS= no no 0.466 0.318 0.619 1e-105
A3AB67 906 Formin-like protein 16 OS yes no 0.496 0.347 0.565 1e-100
Q10Q99 892 Formin-like protein 8 OS= no no 0.536 0.381 0.406 8e-68
Q0D5P3 929 Formin-like protein 11 OS no no 0.501 0.342 0.429 3e-66
Q9MA60 884 Formin-like protein 11 OS no no 0.463 0.332 0.454 2e-64
O23373 785 Formin-like protein 3 OS= no no 0.498 0.402 0.433 1e-63
Q94B77 900 Formin-like protein 5 OS= no no 0.474 0.334 0.446 9e-63
Q6MWG9 906 Formin-like protein 18 OS no no 0.481 0.336 0.412 5e-62
>sp|O04532|FH8_ARATH Formin-like protein 8 OS=Arabidopsis thaliana GN=FH8 PE=1 SV=1 Back     alignment and function desciption
 Score =  532 bits (1370), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 334/664 (50%), Positives = 417/664 (62%), Gaps = 84/664 (12%)

Query: 1   MAVMF-QPW---LLLLYILISVIPFSSCQ----PRNIETFYPFDPSSSPAPSPTITSDPP 52
           MA MF  PW    L+ +  I V+PF S      P+NIETF+P                  
Sbjct: 1   MAAMFNHPWPNLTLIYFFFIVVLPFQSLSQFDSPQNIETFFP------------------ 42

Query: 53  IITPLPPPRSPQLVPPPPSLSAPQSGSPSDNKTIAKAVAATAASTLFIAVLFFFALQRYV 112
            I+ L P   P L P         + S SD KTI KAV  TAASTL +A +FFF LQR +
Sbjct: 43  -ISSLSPVPPPLLPPSSNPSPPSNNSSSSDKKTITKAVLITAASTLLVAGVFFFCLQRCI 101

Query: 113 L--RKRQRVGDGDHNNS---------------NEGRPSNEFTRFDGNLRGLIVDENGLDV 155
           +  R+R RVG     N+                       FTRF G ++GLI+DENGLDV
Sbjct: 102 IARRRRDRVGPVRVENTLPPYPPPPMTSAAVTTTTLAREGFTRF-GGVKGLILDENGLDV 160

Query: 156 LYWRKLEEGDKRKGFDREILHSPRHEEEKEQGMSINK--FEAVQEVPLLRGKSSSSHVKV 213
           LYWRKL+   +R G  R+ + +   E+EKE     NK   E V E+PLLRG+SS+SH  +
Sbjct: 161 LYWRKLQSQRERSGSFRKQIVTGEEEDEKEVIYYKNKKKTEPVTEIPLLRGRSSTSHSVI 220

Query: 214 QPENDDLDHIITSKPTTTPAPSALKTIQEKQPPIQQSNVPPPPPPIQNNKSTAAPPPPPP 273
             E    DH     P                  ++QS   P P P    K  ++P PPPP
Sbjct: 221 HNE----DH---QPPPQVKQSEPTPPPPPPSIAVKQS--APTPSPPPPIKKGSSPSPPPP 271

Query: 274 PPPQPVSAKKNPAPPPPPTSILKPPSVPKRSSNEGQLKDSSAETGNGNGHVKLKPLHWDK 333
           PP + V A  + A  PPP         P R           A  G  +  VKLKPLHWDK
Sbjct: 272 PPVKKVGALSSSASKPPPA--------PVRG----------ASGGETSKQVKLKPLHWDK 313

Query: 334 VNKNVEHSMVWDKIDGGSFRFDGDLMEALFGYVATNRRSPTR--ERNSKNSTGPNSQVIL 391
           VN + +HSMVWDKID GSF FDGDLMEALFGYVA  ++SP +  E+N K++     Q+ +
Sbjct: 314 VNPDSDHSMVWDKIDRGSFSFDGDLMEALFGYVAVGKKSPEQGDEKNPKST-----QIFI 368

Query: 392 LDARKSQNTAIVLKSLALSRGELLSAILDGKELNPETLEKLTRVAPTKEEQSKILDFDGD 451
           LD RKSQNTAIVLKSL ++R EL+ ++++G +  P+TLE+L R+APTKEEQS IL+FDGD
Sbjct: 369 LDPRKSQNTAIVLKSLGMTREELVESLIEGNDFVPDTLERLARIAPTKEEQSAILEFDGD 428

Query: 452 PTRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSEIAQFKETLQTLELGCKELRTRGL 511
             +LADAE+F +H+LK+VP+A+TRLNA LFR+NY  E+A   + LQTL+L CKELR+RGL
Sbjct: 429 TAKLADAETFLFHLLKSVPTAFTRLNAFLFRANYYPEMAHHSKCLQTLDLACKELRSRGL 488

Query: 512 LLKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDVKSTDGKTTLLHFVVEEVVRAEG 571
            +KLLEAILKAGNRMNAGTARGNAQAFNLTAL KLSDVKS DGKT+LL+FVVEEVVR+EG
Sbjct: 489 FVKLLEAILKAGNRMNAGTARGNAQAFNLTALLKLSDVKSVDGKTSLLNFVVEEVVRSEG 548

Query: 572 RRCVIN-RNRSLSRSGSSRNSSSGSLTSENSTPKEEKEKEYMRLGLPVIGGLSAEFSNVK 630
           +RCV+N R+ SL+RSGSS  + +G  +S     KEE+EKEY++LGLPV+GGLS+EFSNVK
Sbjct: 549 KRCVMNRRSHSLTRSGSS--NYNGGNSSLQVMSKEEQEKEYLKLGLPVVGGLSSEFSNVK 606

Query: 631 KAAT 634
           KAA 
Sbjct: 607 KAAC 610
Might be involved in the organization and polarity of the actin cytoskeleton. Interacts with the barbed end of actin filaments and nucleates actin-filament polymerization in vitro.
Arabidopsis thaliana (taxid: 3702)
>sp|O48682|FH4_ARATH Formin-like protein 4 OS=Arabidopsis thaliana GN=FH4 PE=1 SV=2 Back     alignment and function description
>sp|Q9XIE0|FH7_ARATH Formin-like protein 7 OS=Arabidopsis thaliana GN=FH7 PE=2 SV=1 Back     alignment and function description
>sp|A3AB67|FH16_ORYSJ Formin-like protein 16 OS=Oryza sativa subsp. japonica GN=FH16 PE=2 SV=1 Back     alignment and function description
>sp|Q10Q99|FH8_ORYSJ Formin-like protein 8 OS=Oryza sativa subsp. japonica GN=FH8 PE=2 SV=1 Back     alignment and function description
>sp|Q0D5P3|FH11_ORYSJ Formin-like protein 11 OS=Oryza sativa subsp. japonica GN=FH11 PE=2 SV=1 Back     alignment and function description
>sp|Q9MA60|FH11_ARATH Formin-like protein 11 OS=Arabidopsis thaliana GN=FH11 PE=2 SV=1 Back     alignment and function description
>sp|O23373|FH3_ARATH Formin-like protein 3 OS=Arabidopsis thaliana GN=FH3 PE=2 SV=3 Back     alignment and function description
>sp|Q94B77|FH5_ARATH Formin-like protein 5 OS=Arabidopsis thaliana GN=FH5 PE=2 SV=2 Back     alignment and function description
>sp|Q6MWG9|FH18_ORYSJ Formin-like protein 18 OS=Oryza sativa subsp. japonica GN=FH18 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query634
296086486724 unnamed protein product [Vitis vinifera] 0.769 0.674 0.579 1e-156
224102493 783 predicted protein [Populus trichocarpa] 0.930 0.753 0.534 1e-156
296082879 751 unnamed protein product [Vitis vinifera] 0.910 0.768 0.526 1e-156
224102661 760 predicted protein [Populus trichocarpa] 0.913 0.761 0.525 1e-154
357516685 740 Formin-like protein [Medicago truncatula 0.933 0.8 0.506 1e-154
15223064 760 formin-like protein 8 [Arabidopsis thali 0.914 0.763 0.503 1e-148
297845458 761 hypothetical protein ARALYDRAFT_313260 [ 0.903 0.752 0.494 1e-140
160013939 763 RecName: Full=Formin-like protein 4; Sho 0.917 0.762 0.5 1e-139
171921111719 group I formin [Brassica oleracea] 0.873 0.770 0.494 1e-131
297841751719 hypothetical protein ARALYDRAFT_476139 [ 0.886 0.781 0.479 1e-129
>gi|296086486|emb|CBI32075.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 316/545 (57%), Positives = 389/545 (71%), Gaps = 57/545 (10%)

Query: 99  FIAVLFFFALQRYVLRKRQRVGDGD--HNNSNEGRPSNEFTRFDGNLRGLIVDENGLDVL 156
           F+A LFF   QRY + +R+R  DG+             EF+RF+GNL+GLIVDENGLDVL
Sbjct: 72  FVAGLFFLLFQRYTVARRRRQKDGNDPRGGGEHVVHHTEFSRFNGNLKGLIVDENGLDVL 131

Query: 157 YWRKLEEGDKRKGFDREILHSPRHEEEK--EQGMSINKFEAVQEVPLLRGKSSSSHVKVQ 214
           YW++LE G ++  F +E LH+ + EE++    G    K E +QE+PLLRGKSS+S+ +VQ
Sbjct: 132 YWKQLEGGSRKNSFRKEALHNLKDEEKRMSRNGDQRAKPEPIQEIPLLRGKSSTSYDEVQ 191

Query: 215 PENDDLDHIITSKPTTTPAPSALKTIQEKQPPIQQSNVPPPPPPIQNNKSTAAPPPPPPP 274
            E ++L+                                                PPP  
Sbjct: 192 EEVENLNRF--------------------------------------------SAPPPLS 207

Query: 275 PPQPVSAKKNPAPPPPPTSILKPPSVPKRSSNEGQLKDSSA---ETGNGNGHVKLKPLHW 331
               +S +   A     +S  +  SVPK   N  +L +SS+   + G GNG V LKPLHW
Sbjct: 208 QSFEISLE---AAGGFTSSTKEASSVPKGVPNGSKLGESSSGYSKAGTGNGQVALKPLHW 264

Query: 332 DKVNKNVEHSMVWDKIDGGSFRFDGDLMEALFGYVATNRRSPTRERNSKN--STGPNSQV 389
           DKVN N  HSMVW KIDGGSF FDGDLMEALFG+VATNRRSP R  N+ N  S+  ++Q+
Sbjct: 265 DKVNTNANHSMVWHKIDGGSFSFDGDLMEALFGFVATNRRSPQRNHNNPNGASSSQSAQI 324

Query: 390 ILLDARKSQNTAIVLKSLALSRGELLSAILDGKELNPETLEKLTRVAPTKEEQSKILDFD 449
            +LD+RKSQNTAIVL+SLA+SR E+L+A+++G++LN +TLEKLT++APTKEE+S+IL F 
Sbjct: 325 FILDSRKSQNTAIVLRSLAISRKEILNALIEGQDLNADTLEKLTKIAPTKEEESQILAFK 384

Query: 450 GDPTRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSEIAQFKETLQTLELGCKELRTR 509
           GDPTRLADAESF YHILKAVPSA+ RL+A+ FR NYDSEI   +E LQTLELGCKELRTR
Sbjct: 385 GDPTRLADAESFLYHILKAVPSAFDRLSAMFFRLNYDSEILHLRECLQTLELGCKELRTR 444

Query: 510 GLLLKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDVKSTDGKTTLLHFVVEEVVRA 569
           GL LKLLEAILKAGNRMNAGT+RGNAQAFNL AL+KLSDVKSTDGKTTLLHFVVEEVVR+
Sbjct: 445 GLFLKLLEAILKAGNRMNAGTSRGNAQAFNLAALQKLSDVKSTDGKTTLLHFVVEEVVRS 504

Query: 570 EGRRCVINRNRSLSRSGSSRNSSSGSLTSENSTPKEEKEKEYMRLGLPVIGGLSAEFSNV 629
           EG+RCV+NRNRSLSRS SS++SS+ SL SENST +E++EKEY+ +GLPV+GGLSAEFSNV
Sbjct: 505 EGKRCVLNRNRSLSRS-SSQSSSNSSLYSENSTSREDREKEYIMIGLPVVGGLSAEFSNV 563

Query: 630 KKAAT 634
           KKAA 
Sbjct: 564 KKAAV 568

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224102493|ref|XP_002312698.1| predicted protein [Populus trichocarpa] gi|222852518|gb|EEE90065.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296082879|emb|CBI22180.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224102661|ref|XP_002312768.1| predicted protein [Populus trichocarpa] gi|222852588|gb|EEE90135.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357516685|ref|XP_003628631.1| Formin-like protein [Medicago truncatula] gi|355522653|gb|AET03107.1| Formin-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|15223064|ref|NP_177171.1| formin-like protein 8 [Arabidopsis thaliana] gi|75097064|sp|O04532.1|FH8_ARATH RecName: Full=Formin-like protein 8; Short=AtFH8; Short=AtFORMIN-1; Flags: Precursor gi|2194126|gb|AAB61101.1| EST gb|T43335 comes from this gene [Arabidopsis thaliana] gi|332196903|gb|AEE35024.1| formin-like protein 8 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297845458|ref|XP_002890610.1| hypothetical protein ARALYDRAFT_313260 [Arabidopsis lyrata subsp. lyrata] gi|297336452|gb|EFH66869.1| hypothetical protein ARALYDRAFT_313260 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|160013939|sp|O48682.2|FH4_ARATH RecName: Full=Formin-like protein 4; Short=AtFH4; Short=AtFORMIN-4; Flags: Precursor Back     alignment and taxonomy information
>gi|171921111|gb|ACB59209.1| group I formin [Brassica oleracea] Back     alignment and taxonomy information
>gi|297841751|ref|XP_002888757.1| hypothetical protein ARALYDRAFT_476139 [Arabidopsis lyrata subsp. lyrata] gi|297334598|gb|EFH65016.1| hypothetical protein ARALYDRAFT_476139 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query634
TAIR|locus:2020568 760 FH8 "formin 8" [Arabidopsis th 0.496 0.414 0.545 2.4e-110
TAIR|locus:2025981 929 AT1G59910 [Arabidopsis thalian 0.471 0.321 0.509 4.1e-87
TAIR|locus:2172129 900 Fh5 "formin homology5" [Arabid 0.370 0.261 0.421 3.8e-50
TAIR|locus:2079807 884 AT3G05470 [Arabidopsis thalian 0.463 0.332 0.374 2.7e-46
TAIR|locus:2158576 899 FH6 "formin homolog 6" [Arabid 0.402 0.283 0.396 3.7e-45
TAIR|locus:2094493 1051 AFH1 "formin homology 1" [Arab 0.370 0.223 0.396 1.9e-44
TAIR|locus:2043989 894 AT2G43800 [Arabidopsis thalian 0.364 0.258 0.390 2.6e-41
TAIR|locus:20344711230 AFH14 "Formin Homology 14" [Ar 0.367 0.189 0.312 1.9e-23
TAIR|locus:2156248782 AT5G48360 [Arabidopsis thalian 0.321 0.260 0.352 1.5e-22
TAIR|locus:2079711841 AT3G07540 [Arabidopsis thalian 0.358 0.269 0.314 1.9e-21
TAIR|locus:2020568 FH8 "formin 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 851 (304.6 bits), Expect = 2.4e-110, Sum P(3) = 2.4e-110
 Identities = 174/319 (54%), Positives = 216/319 (67%)

Query:   315 AETGNGNGHVKLKPLHWDKVNKNVEHSMVWDKIDGGSFRFDGDLMEALFGYVATNRRSPT 374
             A  G  +  VKLKPLHWDKVN + +HSMVWDKID GSF FDGDLMEALFGYVA  ++SP 
Sbjct:   295 ASGGETSKQVKLKPLHWDKVNPDSDHSMVWDKIDRGSFSFDGDLMEALFGYVAVGKKSP- 353

Query:   375 RERNSKNSTGPNSQVILLDARKSQNTAIVLKSLALSRGELLSAILDGKELNPETLEKLTR 434
              + + KN    ++Q+ +LD RKSQNTAIVLKSL ++R EL+ ++++G +  P+TLE+L R
Sbjct:   354 EQGDEKNPK--STQIFILDPRKSQNTAIVLKSLGMTREELVESLIEGNDFVPDTLERLAR 411

Query:   435 VAPTKEEQSKILDFDGDPTRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSEIAQFKE 494
             +APTKEEQS IL+FDGD  +LADAE+F +H+LK+VP+A+TRLNA LFR+NY  E+A   +
Sbjct:   412 IAPTKEEQSAILEFDGDTAKLADAETFLFHLLKSVPTAFTRLNAFLFRANYYPEMAHHSK 471

Query:   495 TLQTLELGCXXXXXXXXXXXXXXXXXXXGNRMNAGTARGNAQAFNLTALRKLSDVKSTDG 554
              LQTL+L C                   GNRMNAGTARGNAQAFNLTAL KLSDVKS DG
Sbjct:   472 CLQTLDLACKELRSRGLFVKLLEAILKAGNRMNAGTARGNAQAFNLTALLKLSDVKSVDG 531

Query:   555 KTTLLHFXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXPKEEKEKEYMRL 614
             KT+LL+F              +                           KEE+EKEY++L
Sbjct:   532 KTSLLNFVVEEVVRSEGKRC-VMNRRSHSLTRSGSSNYNGGNSSLQVMSKEEQEKEYLKL 590

Query:   615 GLPVIGGLSAEFSNVKKAA 633
             GLPV+GGLS+EFSNVKKAA
Sbjct:   591 GLPVVGGLSSEFSNVKKAA 609
GO:0003779 "actin binding" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0005522 "profilin binding" evidence=IDA
GO:0009932 "cell tip growth" evidence=IMP
GO:0045010 "actin nucleation" evidence=IDA
GO:0051015 "actin filament binding" evidence=IDA
GO:0005911 "cell-cell junction" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0002679 "respiratory burst involved in defense response" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
GO:0006865 "amino acid transport" evidence=RCA
GO:0009407 "toxin catabolic process" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0010583 "response to cyclopentenone" evidence=RCA
GO:0015824 "proline transport" evidence=RCA
TAIR|locus:2025981 AT1G59910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172129 Fh5 "formin homology5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079807 AT3G05470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158576 FH6 "formin homolog 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094493 AFH1 "formin homology 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043989 AT2G43800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034471 AFH14 "Formin Homology 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156248 AT5G48360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079711 AT3G07540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O04532FH8_ARATHNo assigned EC number0.50300.91480.7631yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00081820
hypothetical protein (783 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query634
pfam02181372 pfam02181, FH2, Formin Homology 2 Domain 2e-89
smart00498392 smart00498, FH2, Formin Homology 2 Domain 5e-77
PRK14948620 PRK14948, PRK14948, DNA polymerase III subunits ga 2e-06
PRK14965576 PRK14965, PRK14965, DNA polymerase III subunits ga 3e-06
PRK14948620 PRK14948, PRK14948, DNA polymerase III subunits ga 4e-06
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 4e-06
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 7e-06
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 8e-06
pfam04652315 pfam04652, DUF605, Vta1 like 2e-05
pfam13388422 pfam13388, DUF4106, Protein of unknown function (D 2e-05
pfam07174297 pfam07174, FAP, Fibronectin-attachment protein (FA 2e-05
pfam07174297 pfam07174, FAP, Fibronectin-attachment protein (FA 4e-05
PRK14950585 PRK14950, PRK14950, DNA polymerase III subunits ga 7e-05
PRK14950585 PRK14950, PRK14950, DNA polymerase III subunits ga 8e-05
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 1e-04
PRK11633226 PRK11633, PRK11633, cell division protein DedD; Pr 1e-04
pfam14179110 pfam14179, YppG, YppG-like protein 1e-04
PRK14948620 PRK14948, PRK14948, DNA polymerase III subunits ga 2e-04
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 3e-04
PRK14971614 PRK14971, PRK14971, DNA polymerase III subunits ga 3e-04
COG0810244 COG0810, TonB, Periplasmic protein TonB, links inn 3e-04
PRK14948620 PRK14948, PRK14948, DNA polymerase III subunits ga 4e-04
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 4e-04
PRK14950585 PRK14950, PRK14950, DNA polymerase III subunits ga 4e-04
PLN02983274 PLN02983, PLN02983, biotin carboxyl carrier protei 4e-04
pfam04652315 pfam04652, DUF605, Vta1 like 5e-04
pfam12526115 pfam12526, DUF3729, Protein of unknown function (D 5e-04
PRK14948620 PRK14948, PRK14948, DNA polymerase III subunits ga 7e-04
PRK14951618 PRK14951, PRK14951, DNA polymerase III subunits ga 7e-04
PRK14948620 PRK14948, PRK14948, DNA polymerase III subunits ga 8e-04
PRK14951618 PRK14951, PRK14951, DNA polymerase III subunits ga 8e-04
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 0.001
PLN02983274 PLN02983, PLN02983, biotin carboxyl carrier protei 0.001
PRK14951618 PRK14951, PRK14951, DNA polymerase III subunits ga 0.001
pfam03154 979 pfam03154, Atrophin-1, Atrophin-1 family 0.001
COG0810244 COG0810, TonB, Periplasmic protein TonB, links inn 0.002
PRK14951618 PRK14951, PRK14951, DNA polymerase III subunits ga 0.002
PRK00404141 PRK00404, tatB, sec-independent translocase; Provi 0.002
pfam10152147 pfam10152, DUF2360, Predicted coiled-coil domain-c 0.002
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 0.002
PLN03209576 PLN03209, PLN03209, translocon at the inner envelo 0.002
smart00818165 smart00818, Amelogenin, Amelogenins, cell adhesion 0.002
PRK01297475 PRK01297, PRK01297, ATP-dependent RNA helicase Rhl 0.002
pfam06346160 pfam06346, Drf_FH1, Formin Homology Region 1 0.002
pfam01213313 pfam01213, CAP_N, Adenylate cyclase associated (CA 0.002
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 0.003
pfam01285424 pfam01285, TEA, TEA/ATTS domain family 0.003
pfam04652315 pfam04652, DUF605, Vta1 like 0.004
pfam07174297 pfam07174, FAP, Fibronectin-attachment protein (FA 0.004
pfam14179110 pfam14179, YppG, YppG-like protein 0.004
PRK14951618 PRK14951, PRK14951, DNA polymerase III subunits ga 0.004
PRK14951618 PRK14951, PRK14951, DNA polymerase III subunits ga 0.004
pfam03154 979 pfam03154, Atrophin-1, Atrophin-1 family 0.004
COG5178 2365 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p 0.004
PRK05641153 PRK05641, PRK05641, putative acetyl-CoA carboxylas 0.004
>gnl|CDD|216919 pfam02181, FH2, Formin Homology 2 Domain Back     alignment and domain information 
 Score =  281 bits (722), Expect = 2e-89
 Identities = 118/314 (37%), Positives = 167/314 (53%), Gaps = 50/314 (15%)

Query: 323 HVKLKPLHWDKVNKNVEHSMVWDKIDGGSFRFDGDLMEALFGYVATNRRSPTRER-NSKN 381
             KLKPLHWDKVN   +   VWD++D  SF  D DL E    + A  ++  +++     +
Sbjct: 8   KKKLKPLHWDKVNPAQDRGTVWDELDEESFEKDLDLSELEELFSAKAKKKKSKKSEKKSS 67

Query: 382 STGPNSQVILLDARKSQNTAIVLKSLALSRGELLSAILDGKE--LNPETLEKLTRVAPTK 439
           S     ++ +LD ++SQN AI+L+ L L   E++ AIL+  E  L  E LE L ++APTK
Sbjct: 68  SKKKKKEISVLDPKRSQNIAILLRKLKLPPEEIVQAILEMDESVLGLELLENLLKMAPTK 127

Query: 440 EEQSKILDFDGDPTRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSEIAQFKETLQTL 499
           EE  K+ ++ GDP++L  AE F   + K +P    RL ALLF+S ++ E+ + K +L+TL
Sbjct: 128 EELKKLKEYKGDPSKLGRAEQFLLELSK-IPRLEERLEALLFKSTFEEEVEELKPSLETL 186

Query: 500 ELGCKELRTRGLLLKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDVKSTDGKTTLL 559
           E   +ELR      KLLE IL  GN MN+GT RGNA+ F L++L KLSD KSTD KTTLL
Sbjct: 187 EAASEELRESRKFKKLLELILALGNYMNSGTRRGNAKGFKLSSLLKLSDTKSTDNKTTLL 246

Query: 560 HFVVEEVVRAEGRRCVINRNRSLSRSGSSRNSSSGSLTSENSTPKEEKEKEYMRLGLPVI 619
           H++V+ +                                                 LP +
Sbjct: 247 HYLVKIIRE----------------------------------------------KLPDL 260

Query: 620 GGLSAEFSNVKKAA 633
              S+E S+V+KAA
Sbjct: 261 LDFSSELSHVEKAA 274

Length = 372
>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain Back     alignment and domain information
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) Back     alignment and domain information
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) Back     alignment and domain information
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) Back     alignment and domain information
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional Back     alignment and domain information
>gnl|CDD|222579 pfam14179, YppG, YppG-like protein Back     alignment and domain information
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729) Back     alignment and domain information
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family Back     alignment and domain information
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional Back     alignment and domain information
>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360) Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional Back     alignment and domain information
>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth Back     alignment and domain information
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1 Back     alignment and domain information
>gnl|CDD|216368 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N terminal Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|216412 pfam01285, TEA, TEA/ATTS domain family Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) Back     alignment and domain information
>gnl|CDD|222579 pfam14179, YppG, YppG-like protein Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family Back     alignment and domain information
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 634
KOG1924 1102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 100.0
smart00498 432 FH2 Formin Homology 2 Domain. FH proteins control 100.0
PF02181370 FH2: Formin Homology 2 Domain; InterPro: IPR015425 100.0
KOG1922 833 consensus Rho GTPase effector BNI1 and related for 100.0
KOG1923 830 consensus Rac1 GTPase effector FRL [Signal transdu 100.0
KOG1925 817 consensus Rac1 GTPase effector FHOS [Signal transd 100.0
KOG1924 1102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 99.91
KOG1923 830 consensus Rac1 GTPase effector FRL [Signal transdu 96.63
smart00498 432 FH2 Formin Homology 2 Domain. FH proteins control 94.62
KOG3671569 consensus Actin regulatory protein (Wiskott-Aldric 94.28
PHA032473151 large tegument protein UL36; Provisional 92.74
KOG3671569 consensus Actin regulatory protein (Wiskott-Aldric 91.77
PHA032473151 large tegument protein UL36; Provisional 90.64
PF06679163 DUF1180: Protein of unknown function (DUF1180); In 88.98
PF02181370 FH2: Formin Homology 2 Domain; InterPro: IPR015425 88.71
KOG1922 833 consensus Rho GTPase effector BNI1 and related for 82.67
KOG1830518 consensus Wiskott Aldrich syndrome proteins [Cytos 81.9
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-56  Score=490.54  Aligned_cols=269  Identities=24%  Similarity=0.399  Sum_probs=232.7

Q ss_pred             cCCCCCCCcCCcccccccCC-ccccccccccccCCCCcccc--hhHHHHhhhhccccCCCCccc-cCCCCCCCCCCceee
Q 043000          316 ETGNGNGHVKLKPLHWDKVN-KNVEHSMVWDKIDGGSFRFD--GDLMEALFGYVATNRRSPTRE-RNSKNSTGPNSQVIL  391 (634)
Q Consensus       316 ~~~~~~p~~KlK~LhW~Kv~-~~~~k~TVW~ki~~~s~~~D--ee~lE~lF~~~~~~~~s~~~~-~~~~~~~~~~~~i~i  391 (634)
                      .++...+...||+++|.||. .+..+..+|-++.++.+.-|  +..++..|+.+...++..... .+.+..+++.+...|
T Consensus       616 pKK~~k~e~~Mrr~nW~kI~p~d~s~~cFWvkv~Edk~en~dlfakL~~~Fatq~k~~k~~e~~eekkt~~kKk~kel~i  695 (1102)
T KOG1924|consen  616 PKKVYKPEVPMRRFNWSKIVPRDLSENCFWVKVNEDKLENDDLFAKLALKFATQPKVKKEQEGGEEKKTGTKKKVKELRI  695 (1102)
T ss_pred             ccccCCCCCccccCCccccCccccCccceeeecchhhccchHHHHHHHHHhhccccccccccccccccchhhhhhhhhee
Confidence            46777889999999999985 45567899999988776544  245666787654332222111 111122445667899


Q ss_pred             cChhhhhhHHHHhhhcCCCHHHHHHHhhcC--CCCCHHHHHHHHhhCCChHHHHhhhhccCCCCCCChhhHHHHHHHhcC
Q 043000          392 LDARKSQNTAIVLKSLALSRGELLSAILDG--KELNPETLEKLTRVAPTKEEQSKILDFDGDPTRLADAESFHYHILKAV  469 (634)
Q Consensus       392 LD~KRaqNiaI~L~~L~~s~eei~~aLld~--~~L~~e~Le~Llk~~Pt~EE~~~L~~y~gd~~~L~~aE~Fl~~Llk~I  469 (634)
                      ||.|.+||++|+|.+|+|+.+||+.+|++.  +.|+...|++|.+.+|.+|.+.+|++++...+.|.+.|||...|. .|
T Consensus       696 lDsKtaQnLsIflgS~rmpyeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaeye~l~e~EQF~vvm~-~v  774 (1102)
T KOG1924|consen  696 LDSKTAQNLSIFLGSFRMPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEYEDLPEPEQFVVVMS-QV  774 (1102)
T ss_pred             cchHHHHHHHHHHhhccCCHHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCHHHHhHHHh-hc
Confidence            999999999999999999999999999864  589999999999999999999999999888899999999999876 89


Q ss_pred             CCHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccccccCCCCCCeeeeecccccccccc
Q 043000          470 PSAYTRLNALLFRSNYDSEIAQFKETLQTLELGCKELRTRGLLLKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDV  549 (634)
Q Consensus       470 P~~~~RL~amlf~~~f~~ev~~l~~~l~~l~~Ac~eLr~S~~f~kLLe~VL~iGN~mN~Gt~RG~A~GFkL~sL~KL~dv  549 (634)
                      .++.-||++++|+.+|.+.+++|+..+..+..||+|||+|+.|.+||++||.+|||||+|+...+|+||++++|.||.||
T Consensus       775 krL~pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSrNa~afgF~is~L~kL~dT  854 (1102)
T KOG1924|consen  775 KRLRPRLSAILFKLTFSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSRNAQAFGFNISFLCKLRDT  854 (1102)
T ss_pred             cccChhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchhhccchHHHHhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999899999999999999999


Q ss_pred             cCCCCCccHHHHHHHHHHHhhCchhhhcccccccCCCC
Q 043000          550 KSTDGKTTLLHFVVEEVVRAEGRRCVINRNRSLSRSGS  587 (634)
Q Consensus       550 Ks~d~ktTLLhfvve~i~rsEg~~~~l~~~~~l~~~~s  587 (634)
                      |++|+|+|||||+++.+++  .++..++|.+||.|...
T Consensus       855 KsaDqk~TLLHfLae~~e~--kypd~l~F~ddl~hv~k  890 (1102)
T KOG1924|consen  855 KSADQKTTLLHFLAEICEE--KYPDILKFPDDLEHVEK  890 (1102)
T ss_pred             cccchhhHHHHHHHHHHHH--hChhhhcchhhHHHHHh
Confidence            9999999999999999985  46688999999988654

>smart00498 FH2 Formin Homology 2 Domain Back     alignment and domain information
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis [] Back     alignment and domain information
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>smart00498 FH2 Formin Homology 2 Domain Back     alignment and domain information
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PHA03247 large tegument protein UL36; Provisional Back     alignment and domain information
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PHA03247 large tegument protein UL36; Provisional Back     alignment and domain information
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins Back     alignment and domain information
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis [] Back     alignment and domain information
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query634
2z6e_A419 Crystal Structure Of Human Daam1 Fh2 Length = 419 5e-15
2j1d_G 483 Crystallization Of Hdaam1 C-Terminal Fragment Lengt 5e-15
3o4x_E 467 Crystal Structure Of Complex Between Amino And Carb 5e-15
3obv_E 457 Autoinhibited Formin Mdia1 Structure Length = 457 8e-15
1v9d_A340 Crystal Structure Of The Core Fh2 Domain Of Mouse M 1e-14
4eah_A402 Crystal Structure Of The Formin Homology 2 Domain O 2e-10
>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2 Length = 419 Back     alignment and structure 
Iteration: 1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 118/252 (46%), Gaps = 18/252 (7%)
Query: 326 LKPLHWDKVNKNVEHSMVWDKIDGGS-FR-FDGDLMEALFGYVA------TNRRSPTRER 377
           LK  +W K+ +N     VW +ID    F+  D + +E  F           N  S  +E 
Sbjct: 17  LKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEA 76
Query: 378 NSKNSTGPNS----QVILLDARKSQNTAIVLKSLALSRGELLSAIL---DGKELNPETLE 430
           ++ + T  +     ++ ++D R++QN  I+L  L LS  E+  AIL   + ++L  + LE
Sbjct: 77  DAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLE 136
Query: 431 KLTRVAPTKEEQSKILDFDGDPTRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSEIA 490
           +L +  P K +   + +   +  R+A A+ F + + + +     RL +L F+  +   +A
Sbjct: 137 QLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSR-INHYQQRLQSLYFKKKFAERVA 195
Query: 491 QFKETLQTLELGCXXXXXXXXXXXXXXXXXXXGNRMNAGTARGNAQAFNLTALRKLSDVK 550
           + K  ++ +  G                    GN MN G  RGNA  F +++L K++D K
Sbjct: 196 EVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQ-RGNAYGFKISSLNKIADTK 254
Query: 551 ST-DGKTTLLHF 561
           S+ D   TLLH+
Sbjct: 255 SSIDKNITLLHY 266
>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment Length = 483 Back     alignment and structure
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy Terminal Fragments Of Mdia1 Length = 467 Back     alignment and structure
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure Length = 457 Back     alignment and structure
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1 Length = 340 Back     alignment and structure
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3 Bound To Actin Length = 402 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query634
3obv_E 457 Protein diaphanous homolog 1; autoinhibition, acti 6e-72
2j1d_G 483 DAAM1, disheveled-associated activator of morphoge 2e-68
1v9d_A340 Diaphanous protein homolog 1; helix bundle, protei 2e-61
1ux5_A411 BNI1 protein; structural protein, FH2 actin cytosk 9e-53
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
2grx_C229 Protein TONB; beta barrel, outer membrane, heteroc 3e-05
2grx_C229 Protein TONB; beta barrel, outer membrane, heteroc 4e-05
2grx_C229 Protein TONB; beta barrel, outer membrane, heteroc 6e-05
2grx_C229 Protein TONB; beta barrel, outer membrane, heteroc 9e-05
2grx_C229 Protein TONB; beta barrel, outer membrane, heteroc 2e-04
2grx_C229 Protein TONB; beta barrel, outer membrane, heteroc 4e-04
2grx_C229 Protein TONB; beta barrel, outer membrane, heteroc 6e-04
2iut_A 574 DNA translocase FTSK; nucleotide-binding, chromoso 6e-05
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 1e-04
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 2e-04
1pk8_A422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 4e-04
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 4e-04
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 7e-04
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 7e-04
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D Length = 457 Back     alignment and structure
 Score =  238 bits (609), Expect = 6e-72
 Identities = 68/254 (26%), Positives = 113/254 (44%), Gaps = 10/254 (3%)

Query: 324 VKLKPLHWDKVNKN-VEHSMVWDKIDGGSFRFDGDLMEALFGYVATNRRSPTRERNSKNS 382
           V+L+  +W K     +     W K+    F  +    +    + A  + S  ++      
Sbjct: 8   VQLRRPNWSKFVAEDLSQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEGGE 67

Query: 383 TGPNSQ------VILLDARKSQNTAIVLKSLALSRGELLSAIL--DGKELNPETLEKLTR 434
              + Q      + +LD++ +QN +I L S  +   E+ + IL  +   L    ++ L +
Sbjct: 68  EKKSVQKKKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIK 127

Query: 435 VAPTKEEQSKILDFDGDPTRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSEIAQFKE 494
             P  E+   + +   +   LA++E F   +   VP    RLNA+LF+  +  ++   K 
Sbjct: 128 QMPEPEQLKMLSELKEEYDDLAESEQFGVVMGT-VPRLRPRLNAILFKLQFSEQVENIKP 186

Query: 495 TLQTLELGCKELRTRGLLLKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDVKSTDG 554
            + ++   C+ELR       LLE  L  GN MNAG+    A  FN++ L KL D KS D 
Sbjct: 187 EIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQ 246

Query: 555 KTTLLHFVVEEVVR 568
           K TLLHF+ E    
Sbjct: 247 KMTLLHFLAELCEN 260
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A Length = 483 Back     alignment and structure
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1 Length = 340 Back     alignment and structure
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A Length = 411 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 Back     alignment and structure
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 Back     alignment and structure
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 Back     alignment and structure
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 Back     alignment and structure
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 Back     alignment and structure
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 Back     alignment and structure
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 Back     alignment and structure
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* Length = 574 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query634
4eah_A402 Formin-like protein 3, actin, alpha skeletal muscl 100.0
2j1d_G 483 DAAM1, disheveled-associated activator of morphoge 100.0
3obv_E 457 Protein diaphanous homolog 1; autoinhibition, acti 100.0
1ux5_A411 BNI1 protein; structural protein, FH2 actin cytosk 100.0
1v9d_A340 Diaphanous protein homolog 1; helix bundle, protei 100.0
1v9d_A 340 Diaphanous protein homolog 1; helix bundle, protei 96.45
2j1d_G 483 DAAM1, disheveled-associated activator of morphoge 95.44
4eah_A 402 Formin-like protein 3, actin, alpha skeletal muscl 95.34
3obv_E 457 Protein diaphanous homolog 1; autoinhibition, acti 82.7
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=1.4e-53  Score=462.60  Aligned_cols=265  Identities=26%  Similarity=0.350  Sum_probs=228.4

Q ss_pred             CCCCCCCcCCcccccccCCccccccccccccCCCCc--ccchhHHHHhhhhccccCCCCccccCCCCCCCCCCceeecCh
Q 043000          317 TGNGNGHVKLKPLHWDKVNKNVEHSMVWDKIDGGSF--RFDGDLMEALFGYVATNRRSPTRERNSKNSTGPNSQVILLDA  394 (634)
Q Consensus       317 ~~~~~p~~KlK~LhW~Kv~~~~~k~TVW~ki~~~s~--~~Dee~lE~lF~~~~~~~~s~~~~~~~~~~~~~~~~i~iLD~  394 (634)
                      ++...++.+||+|||++|..++.++|||+++++..+  .+|.+.||++|+.+.................++.++++|||+
T Consensus        10 Kk~~~~k~kmk~l~W~kl~~~~i~~Tiw~~~~~~~~~~~ld~~~~E~lF~~k~~~~~~~~~~~k~k~~~k~~~~v~lLd~   89 (402)
T 4eah_A           10 KKPIKTKFRLPVFNWTALKPNQINGTVFSELDDEKILEDLDLDRFEELFKTKAQGPALDLICSKNKTAQKAASKVTLLEA   89 (402)
T ss_dssp             CCCCCCSSCCCCCCCCEECHHHHTTSTTSSCCTTSCSSTTTHHHHHHHSCCCC--------------------CBCSSCH
T ss_pred             CCCCCCCCCCCCcCceeCChHhccCccccCCchhhhccccCHHHHHHHHhhcccCCccccchhcccccccCCCceeeCCH
Confidence            455678999999999999988899999999998776  689999999998764321110000000112335577999999


Q ss_pred             hhhhhHHHHhhhcCCCHHHHHHHhh--cCCCCCHHHHHHHHhhCCChHHHHhhhhccCC---CCCCChhhHHHHHHHhcC
Q 043000          395 RKSQNTAIVLKSLALSRGELLSAIL--DGKELNPETLEKLTRVAPTKEEQSKILDFDGD---PTRLADAESFHYHILKAV  469 (634)
Q Consensus       395 KRaqNiaI~L~~L~~s~eei~~aLl--d~~~L~~e~Le~Llk~~Pt~EE~~~L~~y~gd---~~~L~~aE~Fl~~Llk~I  469 (634)
                      ||+|||+|+|++|+++.++|++||+  |...|+.|.|+.|++++||+||+..|++|.+|   .+.|+++|||+++|+ .|
T Consensus        90 kra~Ni~I~L~~l~~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~~~L~~~EqF~~~l~-~i  168 (402)
T 4eah_A           90 NRAKNLAITLRKAGRSAEEICRAIHTFDLQTLPVDFVECLMRFLPTEAEVKLLRQYERERQPLEELAAEDRFMLLFS-KV  168 (402)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHTTSCSCCCHHHHHHHHHTCCCHHHHHHHHHHHHSSCCTTTBCHHHHHHHHHH-HS
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHcCCcccCCHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhccHHHHHHHHHH-cc
Confidence            9999999999999999999999997  55689999999999999999999999999876   478999999999997 69


Q ss_pred             CCHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccccccCCCCCCeeeeecccccccccc
Q 043000          470 PSAYTRLNALLFRSNYDSEIAQFKETLQTLELGCKELRTRGLLLKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDV  549 (634)
Q Consensus       470 P~~~~RL~amlf~~~f~~ev~~l~~~l~~l~~Ac~eLr~S~~f~kLLe~VL~iGN~mN~Gt~RG~A~GFkL~sL~KL~dv  549 (634)
                      |++..||+||+|+.+|++++.+|+..+.+|..||++|++|+.|++||++||++|||||+| .||+|+||+|++|.||.||
T Consensus       169 p~~~~Rl~~l~f~~~f~~~~~~l~~~l~~v~~A~~~l~~S~~l~~lL~~iL~~GN~mN~g-~rg~A~GFkL~sL~KL~d~  247 (402)
T 4eah_A          169 ERLTQRMAGMAFLGNFQDNLQMLTPQLNAIIAASASVKSSQKLKQMLEIILALGNYMNSS-KRGAVYGFKLQSLDLLLDT  247 (402)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCS-SSCCCSCBCGGGGGSSSSS
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhhccCC-CCCccceeeHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999 7999999999999999999


Q ss_pred             cCCCCCccHHHHHHHHHHHhhCchhhhcccccccCC
Q 043000          550 KSTDGKTTLLHFVVEEVVRAEGRRCVINRNRSLSRS  585 (634)
Q Consensus       550 Ks~d~ktTLLhfvve~i~rsEg~~~~l~~~~~l~~~  585 (634)
                      |++|+++|||||||+.|.+.  +..+++|.++|.+.
T Consensus       248 Ks~d~k~TLLh~l~~~~~~~--~p~l~~f~~eL~~v  281 (402)
T 4eah_A          248 KSTDRKMTLLHFIALTVKEK--YPELANFWQELHFV  281 (402)
T ss_dssp             BCTTSSSBHHHHHHHHHHHH--CGGGGTCSTTCCSH
T ss_pred             cCCCCCccHHHHHHHHHHhh--hHHHHHHhhhhhhH
Confidence            99999999999999999876  45778888887653
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A Back     alignment and structure
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D Back     alignment and structure
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A Back     alignment and structure
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1 Back     alignment and structure
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1 Back     alignment and structure
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A Back     alignment and structure
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus} Back     alignment and structure
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 634
d1v9da_332 a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 9e-52
d1ux5a_411 a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces 4e-49
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 332 Back     information, alignment and structure

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Diaphanous protein homolog 1, dia1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  179 bits (455), Expect = 9e-52
 Identities = 58/183 (31%), Positives = 92/183 (50%), Gaps = 3/183 (1%)

Query: 388 QVILLDARKSQNTAIVLKSLALSRGELLSAIL--DGKELNPETLEKLTRVAPTKEEQSKI 445
           ++ +LD++ +QN +I L S  +   E+ + IL  +   L    ++ L +  P  E+   +
Sbjct: 3   ELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKML 62

Query: 446 LDFDGDPTRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSEIAQFKETLQTLELGCKE 505
            +   +   LA++E F   +   VP    RLNA+LF+  +  ++   K  + ++   C+E
Sbjct: 63  SELKEEYDDLAESEQFGVVMGT-VPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEE 121

Query: 506 LRTRGLLLKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDVKSTDGKTTLLHFVVEE 565
           LR       LLE  L  GN MNAG+    A  FN++ L KL D KS D K TLLHF+ E 
Sbjct: 122 LRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAEL 181

Query: 566 VVR 568
              
Sbjct: 182 CEN 184
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 411 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query634
d1ux5a_411 Bni1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 100.0
d1v9da_332 Diaphanous protein homolog 1, dia1 {Mouse (Mus mus 100.0
d1v9da_ 332 Diaphanous protein homolog 1, dia1 {Mouse (Mus mus 91.26
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Bni1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.9e-46  Score=400.89  Aligned_cols=251  Identities=22%  Similarity=0.310  Sum_probs=211.4

Q ss_pred             CCCcCCcccccccCCccccccccccccCCCCc------ccchhHHHHhhhhccccCCCCccccCCCCCCCCCCceeecCh
Q 043000          321 NGHVKLKPLHWDKVNKNVEHSMVWDKIDGGSF------RFDGDLMEALFGYVATNRRSPTRERNSKNSTGPNSQVILLDA  394 (634)
Q Consensus       321 ~p~~KlK~LhW~Kv~~~~~k~TVW~ki~~~s~------~~Dee~lE~lF~~~~~~~~s~~~~~~~~~~~~~~~~i~iLD~  394 (634)
                      .|+.+||+|||+||+.  .++|||+++.+..+      .+|.+.||++|+.+.......       ....+.+.++|||.
T Consensus         4 kP~~klK~l~W~ki~~--~~~tiW~~i~~~~~~~~~~~~~~~~~le~~F~~k~~~~~~~-------~~~~~~~~~~lLd~   74 (411)
T d1ux5a_           4 RPHKKLKQLHWEKLDC--TDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLAS-------KRKEDLQKITFLSR   74 (411)
T ss_dssp             CCSSCBCCCCCCCCSS--CCSSSCCSSHHHHHHHHHHHTTHHHHHHHHTBSSCCHHHHH-------HHHHTTTSBCCSCH
T ss_pred             CCCCCCCCCCceeCCC--CCCCcchhcccccchhHHHhhhhHHHHHHHhccCCCCCCcc-------cccccccccccCcH
Confidence            4677999999999963  46899998865433      456678999998654221111       11234567899999


Q ss_pred             hhhhhHHHHhhhc-CCCHHHHHHHhhcCC--CCCHHHHH--------------HHHhhCCChHHHHhhhhcc------CC
Q 043000          395 RKSQNTAIVLKSL-ALSRGELLSAILDGK--ELNPETLE--------------KLTRVAPTKEEQSKILDFD------GD  451 (634)
Q Consensus       395 KRaqNiaI~L~~L-~~s~eei~~aLld~~--~L~~e~Le--------------~Llk~~Pt~EE~~~L~~y~------gd  451 (634)
                      ||+|||+|+|++| +++.++|++||+.++  .|+.+.+.              .|.+++||.||...|++|.      ||
T Consensus        75 kr~qni~I~L~~~~~~s~~~i~~ai~~~d~~~l~~~~l~~ll~~~~~~~~~~~~l~~~lPt~eE~~~l~~~~~~~~~~~d  154 (411)
T d1ux5a_          75 DISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKD  154 (411)
T ss_dssp             HHHHHHHHHTGGGTTSCHHHHHHHHHTTTHHHHTCHHHHHHTTCHHHHCCCHHHHHHTGGGCCCCTTCCCGGGCCCCSSC
T ss_pred             HHHHHHHHHHHHccCCCHHHHHHHHHhcChhhcCHHHHHHHHhhcchhhhHHHHHHHhCCCcHHHHHHHHHHhhccccCC
Confidence            9999999999999 799999999998543  56655554              4558999999999999995      78


Q ss_pred             CCCCChhhHHHHHHHh-cCCCHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccccccCC
Q 043000          452 PTRLADAESFHYHILK-AVPSAYTRLNALLFRSNYDSEIAQFKETLQTLELGCKELRTRGLLLKLLEAILKAGNRMNAGT  530 (634)
Q Consensus       452 ~~~L~~aE~Fl~~Llk-~IP~~~~RL~amlf~~~f~~ev~~l~~~l~~l~~Ac~eLr~S~~f~kLLe~VL~iGN~mN~Gt  530 (634)
                      .+.|+.+|+|+++|+. .||++..||+||+|+.+|+++++++.+.+.++..||++|++|..|++||++||++|||||+|+
T Consensus       155 ~~~L~~~Eqf~~~l~~~~i~~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~  234 (411)
T d1ux5a_         155 PNDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTS  234 (411)
T ss_dssp             STTBCHHHHHHHHTTTTTTTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSCGG
T ss_pred             hhhcCHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHhhhhcCCC
Confidence            8999999999999863 589999999999999999999999999999999999999999999999999999999999985


Q ss_pred             CCCCeeeeecccccccccccCCCCCccHHHHHHHHHHHhhCchhhhcccccccC
Q 043000          531 ARGNAQAFNLTALRKLSDVKSTDGKTTLLHFVVEEVVRAEGRRCVINRNRSLSR  584 (634)
Q Consensus       531 ~RG~A~GFkL~sL~KL~dvKs~d~ktTLLhfvve~i~rsEg~~~~l~~~~~l~~  584 (634)
                        |+|+||+|++|.||.|+|++|+++|||||||+.+.+..+  .++.+.+++.+
T Consensus       235 --~~A~GFkL~sL~kL~d~Ks~d~~~tLL~yiv~~~~~~~p--~l~~~~~el~~  284 (411)
T d1ux5a_         235 --KQAQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYP--SFNDFLSELEP  284 (411)
T ss_dssp             --GCCSCCCGGGGGGSSSCBCTTSCSBHHHHHHHHHHHHCG--GGGGHHHHTHH
T ss_pred             --CCcceeehHHHHHhhhccCCCCCeeHHHHHHHHHHHhCc--HhhccHHHHHH
Confidence              579999999999999999999999999999999987654  55565555543
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure