Citrus Sinensis ID: 043001

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-
Protein Sequence
MEGGSSRTRHTRSQVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIVRSRTFPKSQTQAHTDCFPPNFDRELFKAIHDFVMSKDN
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccccHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
meggssrtrhtrsqvgpdwsskeALILGNEIAAVEADCLKALSSYQKWKIISEtctaldvprtanqcrRKWDSLIDEYKKIIVRsrtfpksqtqahtdcfppnfDRELFKAIHDFVMSKDN
Flexible Loop (DISEMBL)
meggssrtrhtrsqvgpdwsskeALILGNEIAAVEADCLKALSSYQKWKIISetctaldvprtanqcrrkwdslIDEYKKIIVRsrtfpksqtqahtdcfppNFDRELFKAIHDFVMSKDN
Low Complexity Region (SEG)
MEGGSSRTRHTRSQVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIVRSRTFPKSQTQAHTDCFPPNFDRELFKAIHDFVMSKDN
Disordered region (IsUnstruct)
**********************EALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIVRSRTFPKSQTQAHTDCFPPNFDRELFKAIHDFV*****
Disordered Region (DISOPRED)
********************SKEALILGNE*****************WKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIVRSRTFP*********CFPPNFDRELFKAIHDFVMS***
Disordered Region (DISEMBL)
******************WSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIVRSRTFPKSQTQAHTDCFPPNFDRELFKAIHDFVMSKDN
Disordered Region (DISPRO)
****************PDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIVRSRTFPKSQTQAHTDCFPPNFDRELFKAIHDFVMSK**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEGGSSRTRHTRSQVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIVRSRTFPKSQTQAHTDCFPPNFDRELFKAIHDFVMSKDN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
225429854	274	PREDICTED: uncharacterized protein LOC10	0.884	0.390	0.575	7e-27
30688985	294	sequence-specific DNA binding transcript	0.991	0.408	0.507	8e-27
296081798	250	unnamed protein product [Vitis vinifera]	0.884	0.428	0.575	8e-27
2827522	291	hypothetical protein [Arabidopsis thalia	0.991	0.412	0.507	8e-27
297798844	297	predicted protein [Arabidopsis lyrata su	0.991	0.404	0.523	1e-26
224121236	291	predicted protein [Populus trichocarpa]	0.925	0.384	0.533	4e-26
118487302	459	unknown [Populus trichocarpa]	0.925	0.244	0.533	4e-26
449437322	311	PREDICTED: uncharacterized protein LOC10	0.975	0.379	0.503	5e-25
356565840	316	PREDICTED: uncharacterized protein LOC10	0.859	0.329	0.482	2e-24
255574163	419	transcription factor, putative [Ricinus	0.900	0.260	0.508	7e-24

>gi|225429854|ref|XP_002283217.1| PREDICTED: uncharacterized protein LOC100255883 isoform 1 [Vitis vinifera] gi|359476329|ref|XP_003631820.1| PREDICTED: uncharacterized protein LOC100255883 isoform 2 [Vitis vinifera]

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 65/113 (57%), Positives = 82/113 (72%), Gaps = 6/113 (5%)

Query: 14  QVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDS 73
           Q+ PDW+  ++LIL NEIAAVE +CL ALS+YQKWKII+E CTALDV RT NQCRRKWDS
Sbjct: 44  QLAPDWTINDSLILVNEIAAVEGECLNALSTYQKWKIIAENCTALDVSRTFNQCRRKWDS 103

Query: 74  LIDEYKKII---VRSR--TFPKSQTQAHTDC-FPPNFDRELFKAIHDFVMSKD 120
           L+ EY KI     RSR  +F   +++   +   P +F+RELFKAI D V S++
Sbjct: 104 LLFEYNKIKKWESRSRNVSFWTLESERRRELGLPVDFERELFKAIDDLVSSQE 156

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30688985|ref|NP_194855.2| sequence-specific DNA binding transcription factor [Arabidopsis thaliana] gi|26452367|dbj|BAC43269.1| unknown protein [Arabidopsis thaliana] gi|28950855|gb|AAO63351.1| At4g31270 [Arabidopsis thaliana] gi|332660484|gb|AEE85884.1| sequence-specific DNA binding transcription factor [Arabidopsis thaliana]

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 65/128 (50%), Positives = 84/128 (65%), Gaps = 8/128 (6%)

Query: 1   MEGGSSRTRHTRSQVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDV 60
           ME G+S +R TRSQV P+W+ K+ L+L NEIAAVEADC  ALSS+QKW +I+E C ALDV
Sbjct: 1   MEEGTSGSRRTRSQVAPEWAVKDCLVLVNEIAAVEADCSNALSSFQKWTMITENCNALDV 60

Query: 61  PRTANQCRRKWDSLIDEYKKII---VRSRTFPKSQTQAHTD-----CFPPNFDRELFKAI 112
            R  NQCRRKWDSL+ +Y +I     + R   +S     +D       P + D ELF+AI
Sbjct: 61  SRNLNQCRRKWDSLMSDYNQIKKWESQYRGTGRSYWSLSSDKRKLLNLPGDIDIELFEAI 120

Query: 113 HDFVMSKD 120
           +  VM +D
Sbjct: 121 NAVVMIQD 128

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081798|emb|CBI20803.3| unnamed protein product [Vitis vinifera]

 Score =  124 bits (310), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 65/113 (57%), Positives = 82/113 (72%), Gaps = 6/113 (5%)

Query: 14  QVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDS 73
           Q+ PDW+  ++LIL NEIAAVE +CL ALS+YQKWKII+E CTALDV RT NQCRRKWDS
Sbjct: 20  QLAPDWTINDSLILVNEIAAVEGECLNALSTYQKWKIIAENCTALDVSRTFNQCRRKWDS 79

Query: 74  LIDEYKKII---VRSR--TFPKSQTQAHTDC-FPPNFDRELFKAIHDFVMSKD 120
           L+ EY KI     RSR  +F   +++   +   P +F+RELFKAI D V S++
Sbjct: 80  LLFEYNKIKKWESRSRNVSFWTLESERRRELGLPVDFERELFKAIDDLVSSQE 132

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2827522|emb|CAA16530.1| hypothetical protein [Arabidopsis thaliana] gi|7270029|emb|CAB79845.1| hypothetical protein [Arabidopsis thaliana]

 Score =  124 bits (310), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 65/128 (50%), Positives = 84/128 (65%), Gaps = 8/128 (6%)

Query: 1   MEGGSSRTRHTRSQVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDV 60
           ME G+S +R TRSQV P+W+ K+ L+L NEIAAVEADC  ALSS+QKW +I+E C ALDV
Sbjct: 1   MEEGTSGSRRTRSQVAPEWAVKDCLVLVNEIAAVEADCSNALSSFQKWTMITENCNALDV 60

Query: 61  PRTANQCRRKWDSLIDEYKKII---VRSRTFPKSQTQAHTD-----CFPPNFDRELFKAI 112
            R  NQCRRKWDSL+ +Y +I     + R   +S     +D       P + D ELF+AI
Sbjct: 61  SRNLNQCRRKWDSLMSDYNQIKKWESQYRGTGRSYWSLSSDKRKLLNLPGDIDIELFEAI 120

Query: 113 HDFVMSKD 120
           +  VM +D
Sbjct: 121 NAVVMIQD 128

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798844|ref|XP_002867306.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297313142|gb|EFH43565.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/128 (52%), Positives = 82/128 (64%), Gaps = 8/128 (6%)

Query: 1   MEGGSSRTRHTRSQVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDV 60
           ME G+S +R TRSQV P+W+ K+ LIL NEIAAVEADC  ALSS+QKW +I E C ALDV
Sbjct: 1   MEEGTSGSRRTRSQVAPEWAVKDCLILVNEIAAVEADCSNALSSFQKWTMILENCNALDV 60

Query: 61  PRTANQCRRKWDSLIDEYKKII---VRSRTFPKSQTQAHTD-----CFPPNFDRELFKAI 112
            R  NQCRRKWDSL+ +Y +I     + R   +S     +D       P N D ELF+AI
Sbjct: 61  RRNLNQCRRKWDSLMSDYNQIKQWESQYRGTGRSYWSLSSDKRKLLNLPGNIDIELFEAI 120

Query: 113 HDFVMSKD 120
              VM +D
Sbjct: 121 SAVVMIQD 128

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121236|ref|XP_002330777.1| predicted protein [Populus trichocarpa] gi|222872579|gb|EEF09710.1| predicted protein [Populus trichocarpa]

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 64/120 (53%), Positives = 82/120 (68%), Gaps = 8/120 (6%)

Query: 5   SSRTRHTRSQVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTA 64
           SS T  TRSQV P+W++KEALIL NEIAAVE DCLKALS+YQKWKII + C  LDV R  
Sbjct: 1   SSSTPRTRSQVSPEWTTKEALILVNEIAAVEKDCLKALSTYQKWKIIVDNCVVLDVARNL 60

Query: 65  NQCRRKWDSLIDEY-------KKIIVRSRTFPKSQTQAHTD-CFPPNFDRELFKAIHDFV 116
           NQCR KW+SL++EY       K+   RS  +   +++   +   P NF+ ELF+AI D++
Sbjct: 61  NQCRTKWNSLVNEYNLIKNWDKESESRSDFYWSLESERRREFGLPENFNDELFRAIDDYM 120

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487302|gb|ABK95479.1| unknown [Populus trichocarpa]

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 64/120 (53%), Positives = 82/120 (68%), Gaps = 8/120 (6%)

Query: 5   SSRTRHTRSQVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTA 64
           SS T  TRSQV P+W++KEALIL NEIAAVE DCLKALS+YQKWKII + C  LDV R  
Sbjct: 26  SSSTPRTRSQVSPEWTTKEALILVNEIAAVEKDCLKALSTYQKWKIIVDNCVVLDVARNL 85

Query: 65  NQCRRKWDSLIDEY-------KKIIVRSRTFPKSQTQAHTD-CFPPNFDRELFKAIHDFV 116
           NQCR KW+SL++EY       K+   RS  +   +++   +   P NF+ ELF+AI D++
Sbjct: 86  NQCRTKWNSLVNEYNLIKNWDKESESRSDFYWSLESERRREFGLPENFNDELFRAIDDYM 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437322|ref|XP_004136441.1| PREDICTED: uncharacterized protein LOC101210084 [Cucumis sativus] gi|449511974|ref|XP_004164105.1| PREDICTED: uncharacterized LOC101210084 [Cucumis sativus]

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 64/127 (50%), Positives = 79/127 (62%), Gaps = 9/127 (7%)

Query: 4   GSSRTRHTRSQ--VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVP 61
           G S +R TRSQ  V P W++ + L+L N IAAVEADCLKALSSYQKWKI++E CT+LDV 
Sbjct: 12  GVSGSRRTRSQIAVAPGWTAADCLVLVNVIAAVEADCLKALSSYQKWKIVAENCTSLDVV 71

Query: 62  RTANQCRRKWDSLIDEYKKIIVRSRTFPKSQT-------QAHTDCFPPNFDRELFKAIHD 114
           RT+NQCRRKWD L+ E+  I       P   +       +      P NFD ELFKAI +
Sbjct: 72  RTSNQCRRKWDCLLIEHDVIKQWELKMPDDDSYWCLASGRRKELGLPENFDEELFKAIDN 131

Query: 115 FVMSKDN 121
               + N
Sbjct: 132 VASMRAN 138

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565840|ref|XP_003551144.1| PREDICTED: uncharacterized protein LOC100775406 [Glycine max]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/116 (48%), Positives = 73/116 (62%), Gaps = 12/116 (10%)

Query: 5   SSRTRHTRSQVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTA 64
            S  R TRSQ  PDWS  E+LIL NE+AAVEADC  ALSSYQ+W II+E C ALDVPR+ 
Sbjct: 15  GSAVRRTRSQAEPDWSVTESLILVNEVAAVEADCSVALSSYQQWNIIAENCAALDVPRSL 74

Query: 65  NQCRRKWDSLIDEYKKIIVRSRTFPKSQTQAHTDCFPPNFDRELFKAIHDFVMSKD 120
            QCRRKW +L+++Y               +      PP F+RE+F+A+   V +++
Sbjct: 75  PQCRRKWRALLNDY------------DGARGERRALPPGFEREVFEAVERVVRARE 118

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574163|ref|XP_002527997.1| transcription factor, putative [Ricinus communis] gi|223532623|gb|EEF34409.1| transcription factor, putative [Ricinus communis]

 Score =  114 bits (285), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 59/116 (50%), Positives = 75/116 (64%), Gaps = 7/116 (6%)

Query: 11  TRSQVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRK 70
           TRSQV PDW++KE+LIL NEIAAVE DCLKALS++QKW II + C+ LDV RT NQCR K
Sbjct: 40  TRSQVAPDWTTKESLILVNEIAAVEGDCLKALSTHQKWNIIVQNCSVLDVSRTLNQCRSK 99

Query: 71  WDSLIDEYKKI------IVRSRTFPKSQTQAHTDC-FPPNFDRELFKAIHDFVMSK 119
           W SL+ +Y +I           ++          C  P NFD ELF+AI  +V ++
Sbjct: 100 WSSLLADYNRIKQWDSKSSSESSYWLLDPPTRDRCGLPHNFDYELFRAIDHYVRAQ 155

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
TAIR|locus:2128186	294	AT4G31270 [Arabidopsis thalian	0.991	0.408	0.515	1.5e-26
TAIR|locus:2051174	314	AT2G33550 [Arabidopsis thalian	0.636	0.245	0.325	0.00058
TAIR|locus:2058718	340	AT2G35640 [Arabidopsis thalian	0.371	0.132	0.387	0.00066

TAIR|locus:2128186 AT4G31270 [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 66/128 (51%), Positives = 84/128 (65%)

Query:     1 MEGGSSRTRHTRSQVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDV 60
             ME G+S +R TRSQV P+W+ K+ L+L NEIAAVEADC  ALSS+QKW +I+E C ALDV
Sbjct:     1 MEEGTSGSRRTRSQVAPEWAVKDCLVLVNEIAAVEADCSNALSSFQKWTMITENCNALDV 60

Query:    61 PRTANQCRRKWDSLIDEY---KKIIVRSRTFPKSQTQAHTDC-----FPPNFDRELFKAI 112
              R  NQCRRKWDSL+ +Y   KK   + R   +S     +D       P + D ELF+AI
Sbjct:    61 SRNLNQCRRKWDSLMSDYNQIKKWESQYRGTGRSYWSLSSDKRKLLNLPGDIDIELFEAI 120

Query:   113 HDFVMSKD 120
             +  VM +D
Sbjct:   121 NAVVMIQD 128

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0009506 "plasmodesma" evidence=IDA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2051174 AT2G33550 [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 0.00058, P = 0.00058
 Identities = 29/89 (32%), Positives = 41/89 (46%)

Query:     2 EGGSSRTRHTRSQVGPDWSSKEALIL--GNEIAAVEADCLKA----LSSYQ---KWKIIS 52
             +GG    +  R    P W+ +E L+L  G  +A       +A    L S Q   KW  +S
Sbjct:    25 DGGDDGVKTARL---PRWTRQEILVLIQGKRVAENRVRRGRAAGMALGSGQMEPKWASVS 81

Query:    53 ETCTALDVPRTANQCRRKWDSLIDEYKKI 81
               C    V R   QCR++W +L  +YKKI
Sbjct:    82 SYCKRHGVNRGPVQCRKRWSNLAGDYKKI 110

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2058718 AT2G35640 [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 0.00066, P = 0.00066
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query:    47 KWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIVRSRTFPKSQTQA 95
             +WK I E C      R  NQC  KWD+L+ +YKKI    R + +S+ ++
Sbjct:    59 RWKWIEEYCWRRGCYRNQNQCNDKWDNLMRDYKKI----REYERSRVES 103


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.130   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      121       121   0.00091  102 3  11 22  0.36    31
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  587 (62 KB)
  Total size of DFA:  148 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.62u 0.09s 11.71t   Elapsed:  00:00:00
  Total cpu time:  11.62u 0.09s 11.71t   Elapsed:  00:00:00
  Start:  Sat May 11 13:45:37 2013   End:  Sat May 11 13:45:37 2013

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032370001 SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (274 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	121
pfam13837	84	pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-bindi	1e-05
cd12203	66	cd12203, GT1, GT1, myb-like, SANT family	1e-04

>gnl|CDD|222409 pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-binding domain

 Score = 40.3 bits (95), Expect = 1e-05
 Identities = 14/50 (28%), Positives = 23/50 (46%)

Query: 42 LSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIVRSRTFPKS 91
            +   W+ I+E        R+A QC+ KW +L  +YKK    ++    S
Sbjct: 29 KRNKHVWEEIAEKMAERGYNRSAEQCKEKWKNLKKKYKKEKESNKGSGSS 78

This presumed domain appears to be related to other Myb/SANT-like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins. Length = 84

>gnl|CDD|213402 cd12203, GT1, GT1, myb-like, SANT family

 Score = 36.9 bits (86), Expect = 1e-04
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 48 WKIISETCTALDVPRTANQCRRKWDSLIDEYKKI 81
          W+ I+     L   R+A QC+ KW++L   YKK+
Sbjct: 32 WEEIAAKMRELGYNRSAKQCKEKWENLNKYYKKV 65

GT-1, a myb-like protein, is one of the GT trihelix transcription factors. GT-1 binds the GT cis-element of rbcS-3A, a light-induced gene, as a dimer. Arabidopsis GT-1 is a trans-activator and acts in the stabilization of components of the transcrtiption pre-initiation complex comprised of TFIIA-TBP-TATA. The isolated GT-1 DNA-binding domain is sufficient to bind DNA. This region closely resemble the myb domain, but with longer helices. It has been proposed that GT-1 may respond to light signals via calcium-dependent phosphorylation to create a light-modulated molecular switch. These proteins are members of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of the DNA-binding Myb domains and is found in a diverse set of proteins. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	121
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	99.81
KOG4282	345	consensus Transcription factor GT-2 and related pr	99.67
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	98.91
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	98.77
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	98.46
PLN03212	249	Transcription repressor MYB5; Provisional	98.41
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.4
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.33
PLN03091	459	hypothetical protein; Provisional	98.1
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	98.06
KOG0048	238	consensus Transcription factor, Myb superfamily [T	97.86
smart00595	89	MADF subfamily of SANT domain.	97.66
PLN03212	249	Transcription repressor MYB5; Provisional	97.51
PLN03091	459	hypothetical protein; Provisional	97.37
PF10545	85	MADF_DNA_bdg: Alcohol dehydrogenase transcription	97.24
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.61
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.2
KOG0051	607	consensus RNA polymerase I termination factor, Myb	95.93
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	95.56
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	94.59
KOG0049	939	consensus Transcription factor, Myb superfamily [T	94.08
PRK13923	170	putative spore coat protein regulator protein YlbO	93.8
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	93.71
KOG0049	939	consensus Transcription factor, Myb superfamily [T	91.67
KOG0051	607	consensus RNA polymerase I termination factor, Myb	91.37
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	89.66
KOG0048	238	consensus Transcription factor, Myb superfamily [T	88.44

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=99.81  E-value=5.3e-20  Score=122.06  Aligned_cols=85  Identities=26%  Similarity=0.445  Sum_probs=57.0

Q ss_pred             CCCCHHHHHHHHHHHHH--HHHHHHh--hcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhhCCCCCCCCh
Q 043001           17 PDWSSKEALILGNEIAA--VEADCLK--ALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIVRSRTFPKSQ   92 (121)
Q Consensus        17 ~~Wt~~Etl~LI~~r~~--~e~~~~~--~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd~~~syw~~~   92 (121)
                      ..||.+||.+||+++.+  ++..|..  ...+..+|+.||+.|.++||.||+.||+.||+||.+.|+++++....     
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~~~~~-----   76 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKDRNKK-----   76 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSSSSS------
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhcCCC-----
Confidence            47999999999999998  5666764  45666799999999999999999999999999999999999984321     


Q ss_pred             hhhhhcCCCCCCcHHHHHHHHHH
Q 043001           93 TQAHTDCFPPNFDRELFKAIHDF  115 (121)
Q Consensus        93 ~~rk~~~LP~~fd~e~f~~ld~~  115 (121)
                             -|.  ..++|+.||++
T Consensus        77 -------~~~--~w~~f~~md~i   90 (90)
T PF13837_consen   77 -------SGS--SWPYFDEMDEI   90 (90)
T ss_dssp             ------------S---TT-----
T ss_pred             -------CCC--cCcCHHHHhcC
Confidence                   011  34678888763

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=99.67  E-value=8.2e-16  Score=124.51  Aligned_cols=90  Identities=20%  Similarity=0.395  Sum_probs=78.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhhCCCCCCCChhhh
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIVRSRTFPKSQTQA   95 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd~~~syw~~~~~r   95 (121)
                      .+.|+.+||++||.+|.++...|.++..+.++|++||.+|..+||.||+.||+.||+||.+.||+.+.+...        
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~~~--------  125 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKKEG--------  125 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcccCC--------
Confidence            489999999999999999999999999999999999999999999999999999999999999999984321        


Q ss_pred             hhcCCCCCCcHHHHHHHHHHhh
Q 043001           96 HTDCFPPNFDRELFKAIHDFVM  117 (121)
Q Consensus        96 k~~~LP~~fd~e~f~~ld~~~~  117 (121)
                        ..  ..-...+|..|++++.
T Consensus       126 --~~--~~s~~~ff~~le~~~~  143 (345)
T KOG4282|consen  126 --SG--EGSSWKFFSELEALLI  143 (345)
T ss_pred             --CC--CCccchHHHHHHHHHh
Confidence              00  1223688999988874

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=98.91  E-value=1.3e-08  Score=66.07  Aligned_cols=66  Identities=26%  Similarity=0.353  Sum_probs=52.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHh-------hcchhhhHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHHHH
Q 043001           15 VGPDWSSKEALILGNEIAAVEADCLK-------ALSSYQKWKIISETCTALDV-PRTANQCRRKWDSLIDEYKK   80 (121)
Q Consensus        15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~-------~~~~~~~W~~Ia~~m~~~G~-~Rs~~QCr~KW~nL~~~Ykk   80 (121)
                      |+++||.+|..+||++...+..-+..       .......|++|+..|.+.|. .||+.|++.+|.||...-|+
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk   74 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKK   74 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            57899999999999986554332211       22457899999999999865 89999999999999988765

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=98.77  E-value=2e-08  Score=60.03  Aligned_cols=47  Identities=28%  Similarity=0.533  Sum_probs=39.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001           17 PDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI   75 (121)
Q Consensus        17 ~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~   75 (121)
                      ..||.+|...|+++...+         +...|..||+.|.   -.||+.||+.+|.+|+
T Consensus         2 ~~Wt~eE~~~l~~~v~~~---------g~~~W~~Ia~~~~---~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    2 GPWTEEEDEKLLEAVKKY---------GKDNWKKIAKRMP---GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             -SS-HHHHHHHHHHHHHS---------TTTHHHHHHHHHS---SSSTHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHh---------CCcHHHHHHHHcC---CCCCHHHHHHHHHhhC
Confidence            469999999999998766         4447999999988   7799999999999874

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=98.46  E-value=4.2e-07  Score=56.16  Aligned_cols=41  Identities=32%  Similarity=0.664  Sum_probs=33.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHH
Q 043001           19 WSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDS   73 (121)
Q Consensus        19 Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~n   73 (121)
                      ||.+|...|++++..+          +..|..||+.|.    .||+.||+.+|.+
T Consensus         1 WT~eEd~~L~~~~~~~----------g~~W~~Ia~~l~----~Rt~~~~~~r~~~   41 (60)
T PF13921_consen    1 WTKEEDELLLELVKKY----------GNDWKKIAEHLG----NRTPKQCRNRWRN   41 (60)
T ss_dssp             S-HHHHHHHHHHHHHH----------TS-HHHHHHHST----TS-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH----------CcCHHHHHHHHC----cCCHHHHHHHHHH
Confidence            9999999999987654          237999999985    7999999999998

...

>PLN03212 Transcription repressor MYB5; Provisional

Probab=98.41  E-value=8.6e-07  Score=69.97  Aligned_cols=50  Identities=20%  Similarity=0.461  Sum_probs=41.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 043001           15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLID   76 (121)
Q Consensus        15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~   76 (121)
                      +...||.+|...|+++...+         ....|..||..|.   ..|+++|||++|.|.+.
T Consensus        24 KRg~WT~EEDe~L~~lV~ky---------G~~nW~~IAk~~g---~gRT~KQCReRW~N~L~   73 (249)
T PLN03212         24 KRGPWTVEEDEILVSFIKKE---------GEGRWRSLPKRAG---LLRCGKSCRLRWMNYLR   73 (249)
T ss_pred             cCCCCCHHHHHHHHHHHHHh---------CcccHHHHHHhhh---cCCCcchHHHHHHHhhc
Confidence            34579999999999987655         4568999998864   67999999999998873

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.40  E-value=9.8e-07  Score=50.78  Aligned_cols=46  Identities=28%  Similarity=0.676  Sum_probs=39.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001           17 PDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI   75 (121)
Q Consensus        17 ~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~   75 (121)
                      ..||.+|...|+.+...+         +...|..||..|.    .||+.+|+.+|.++.
T Consensus         2 ~~Wt~~E~~~l~~~~~~~---------g~~~w~~Ia~~~~----~rt~~~~~~~~~~~~   47 (49)
T smart00717        2 GEWTEEEDELLIELVKKY---------GKNNWEKIAKELP----GRTAEQCRERWNNLL   47 (49)
T ss_pred             CCCCHHHHHHHHHHHHHH---------CcCCHHHHHHHcC----CCCHHHHHHHHHHHc
Confidence            469999999999987655         2268999999987    899999999999875

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.33  E-value=1.7e-06  Score=49.13  Aligned_cols=44  Identities=27%  Similarity=0.658  Sum_probs=37.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 043001           18 DWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSL   74 (121)
Q Consensus        18 ~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL   74 (121)
                      .||.+|...|+.....+         +...|..||+.|.    .||+.||+.+|.++
T Consensus         1 ~Wt~eE~~~l~~~~~~~---------g~~~w~~Ia~~~~----~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKY---------GKNNWEKIAKELP----GRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHH---------CcCCHHHHHhHcC----CCCHHHHHHHHHHh
Confidence            49999999999987655         2267999999987    49999999999876

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PLN03091 hypothetical protein; Provisional

Probab=98.10  E-value=4.4e-06  Score=70.60  Aligned_cols=50  Identities=20%  Similarity=0.400  Sum_probs=41.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001           14 QVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI   75 (121)
Q Consensus        14 ~~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~   75 (121)
                      .+...||.+|...|+++...+         +...|..||..|   |..|+++|||++|.|.+
T Consensus        12 lrKg~WTpEEDe~L~~~V~ky---------G~~nWs~IAk~~---g~gRT~KQCRERW~NyL   61 (459)
T PLN03091         12 LRKGLWSPEEDEKLLRHITKY---------GHGCWSSVPKQA---GLQRCGKSCRLRWINYL   61 (459)
T ss_pred             CcCCCCCHHHHHHHHHHHHHh---------CcCCHHHHhhhh---ccCcCcchHhHHHHhcc
Confidence            445679999999999987654         446899999875   47899999999999754

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=98.06  E-value=2.8e-05  Score=51.65  Aligned_cols=66  Identities=17%  Similarity=0.270  Sum_probs=54.4

Q ss_pred             CCCHHHHHHHHHHHHHHHH-HHH--hhcchhhhHHHHHHHhhh-cCCCCCHHHHHHHHHHHHHHHHHhhh
Q 043001           18 DWSSKEALILGNEIAAVEA-DCL--KALSSYQKWKIISETCTA-LDVPRTANQCRRKWDSLIDEYKKIIV   83 (121)
Q Consensus        18 ~Wt~~Etl~LI~~r~~~e~-~~~--~~~~~~~~W~~Ia~~m~~-~G~~Rs~~QCr~KW~nL~~~Ykkikd   83 (121)
                      +||.+++..||++..+.-. ...  .+.-+..-|+.|++.|.+ .|...+..||+.||..|.+.|+.++.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~~~   70 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIWKE   70 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHH
Confidence            5999999999998754422 222  233457799999999998 48899999999999999999999988

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=97.86  E-value=1.2e-05  Score=62.69  Aligned_cols=49  Identities=16%  Similarity=0.400  Sum_probs=42.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLID   76 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~   76 (121)
                      .+.||.+|...|++.+..+         +...|..||+.+.   ..|++++||.+|-|.++
T Consensus         9 kGpWt~EED~~L~~~V~~~---------G~~~W~~i~k~~g---l~R~GKSCRlRW~NyLr   57 (238)
T KOG0048|consen    9 KGPWTQEEDLTQIRSIKSF---------GKHNGTALPKLAG---LRRCGKSCRLRWTNYLR   57 (238)
T ss_pred             CCCCChHHHHHHHHHHHHh---------CCCCcchhhhhcC---CCccchHHHHHhhcccC
Confidence            4779999999999988766         5668999999865   68999999999998764

>smart00595 MADF subfamily of SANT domain

Probab=97.66  E-value=0.0001  Score=48.43  Aligned_cols=37  Identities=22%  Similarity=0.649  Sum_probs=32.4

Q ss_pred             cchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhh
Q 043001           42 LSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIV   83 (121)
Q Consensus        42 ~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd   83 (121)
                      ......|.+||..|..     |+.+|+.||.+|...|.+...
T Consensus        24 ~~r~~aW~~Ia~~l~~-----~~~~~~~kw~~LR~~y~~e~~   60 (89)
T smart00595       24 EEKRKAWEEIAEELGL-----SVEECKKRWKNLRDRYRRELK   60 (89)
T ss_pred             HHHHHHHHHHHHHHCc-----CHHHHHHHHHHHHHHHHHHHH
Confidence            3457799999999984     999999999999999998754

>PLN03212 Transcription repressor MYB5; Provisional

Probab=97.51  E-value=0.0003  Score=55.68  Aligned_cols=50  Identities=16%  Similarity=0.280  Sum_probs=42.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYK   79 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Yk   79 (121)
                      ...||.+|...||+....+          +.+|..||..|-    .||..||+.+|.++++...
T Consensus        78 kgpWT~EED~lLlel~~~~----------GnKWs~IAk~Lp----GRTDnqIKNRWns~LrK~l  127 (249)
T PLN03212         78 RGGITSDEEDLILRLHRLL----------GNRWSLIAGRIP----GRTDNEIKNYWNTHLRKKL  127 (249)
T ss_pred             cCCCChHHHHHHHHHHHhc----------cccHHHHHhhcC----CCCHHHHHHHHHHHHhHHH
Confidence            4579999999999876544          468999999996    7999999999999887653

>PLN03091 hypothetical protein; Provisional

Probab=97.37  E-value=0.00057  Score=58.04  Aligned_cols=51  Identities=20%  Similarity=0.348  Sum_probs=43.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKK   80 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykk   80 (121)
                      ...||.+|...||+....+          +.+|..||..|-    .||..||+.+|..+++.+.+
T Consensus        67 KgpWT~EED~lLLeL~k~~----------GnKWskIAk~LP----GRTDnqIKNRWnslLKKklr  117 (459)
T PLN03091         67 RGTFSQQEENLIIELHAVL----------GNRWSQIAAQLP----GRTDNEIKNLWNSCLKKKLR  117 (459)
T ss_pred             CCCCCHHHHHHHHHHHHHh----------CcchHHHHHhcC----CCCHHHHHHHHHHHHHHHHH
Confidence            4579999999999987644          458999999986    89999999999999887654

>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats

Probab=97.24  E-value=0.00053  Score=43.88  Aligned_cols=39  Identities=18%  Similarity=0.542  Sum_probs=33.6

Q ss_pred             cchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhh
Q 043001           42 LSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIV   83 (121)
Q Consensus        42 ~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd   83 (121)
                      ......|..||..|.   ..-++.+|+.+|.+|...|...+.
T Consensus        23 ~~r~~aw~~Ia~~l~---~~~~~~~~~~~w~~Lr~~y~~~~~   61 (85)
T PF10545_consen   23 QLREEAWQEIARELG---KEFSVDDCKKRWKNLRDRYRRELK   61 (85)
T ss_pred             HHHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHHHH
Confidence            346889999999994   556799999999999999999875

The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.61  E-value=0.0049  Score=53.29  Aligned_cols=50  Identities=22%  Similarity=0.493  Sum_probs=42.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001           12 RSQVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI   75 (121)
Q Consensus        12 r~~~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~   75 (121)
                      .....+.||.+||+.|++..-.+          .+.|..||..+.    .||..||-.|+-.|=
T Consensus       249 ~~~~~~~WT~qE~lLLLE~ie~y----------~ddW~kVa~hVg----~ks~eqCI~kFL~LP  298 (506)
T KOG1279|consen  249 GESARPNWTEQETLLLLEAIEMY----------GDDWNKVADHVG----TKSQEQCILKFLRLP  298 (506)
T ss_pred             cccCCCCccHHHHHHHHHHHHHh----------cccHHHHHhccC----CCCHHHHHHHHHhcC
Confidence            45678899999999999986433          679999999988    899999999997663

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.20  E-value=0.014  Score=43.69  Aligned_cols=59  Identities=17%  Similarity=0.465  Sum_probs=48.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHH-HHHHh
Q 043001           15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLID-EYKKI   81 (121)
Q Consensus        15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~-~Ykki   81 (121)
                      |.--||.+|.++|.+..   -...+++.+--..+++|++.|.     ||+.-|.=+|.+.++ .|..-
T Consensus         3 RQDAWT~eeDlLLAEtV---LrhIReG~TQL~AFeEvg~~L~-----RTsAACGFRWNs~VRkqY~~~   62 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETV---LRHIREGSTQLSAFEEVGRALN-----RTAAACGFRWNAYVRKQYEEA   62 (161)
T ss_pred             cccccccHHHHHHHHHH---HHHHhcchHHHHHHHHHHHHHc-----ccHHHhcchHHHHHHHHHHHH
Confidence            45679999999999863   4556777777789999999976     999999999998775 46653

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=95.93  E-value=0.015  Score=51.18  Aligned_cols=59  Identities=24%  Similarity=0.356  Sum_probs=44.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHH-H--H---------Hhhcc----hhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEA-D--C---------LKALS----SYQKWKIISETCTALDVPRTANQCRRKWDSLIDEY   78 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~-~--~---------~~~~~----~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Y   78 (121)
                      ...||.+|...||++..++-. .  +         +....    ..-.|-.||+.|.    .|+..|||.||..|...+
T Consensus       436 r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~----TR~~~qCr~Kw~kl~~~~  510 (607)
T KOG0051|consen  436 RGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLG----TRSRIQCRYKWYKLTTSP  510 (607)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhc----CCCcchHHHHHHHHHhhH
Confidence            467999999999998875532 1  2         11222    3458999999666    899999999999998765

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=95.56  E-value=0.026  Score=48.56  Aligned_cols=53  Identities=23%  Similarity=0.362  Sum_probs=43.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHh
Q 043001           15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKI   81 (121)
Q Consensus        15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykki   81 (121)
                      +..+|+.+|++.|++...+.          ++-|..||.+..    .+|..||--+|-+|=..=+-+
T Consensus       278 ~dk~WS~qE~~LLLEGIe~y----------gDdW~kVA~HVg----tKt~EqCIl~FL~LPieD~~l  330 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMY----------GDDWDKVARHVG----TKTKEQCILHFLQLPIEDNYL  330 (531)
T ss_pred             ccccccHHHHHHHHHHHHHh----------hhhHHHHHHHhC----CCCHHHHHHHHHcCCcchhhh
Confidence            45689999999999987544          678999999987    899999999998886443333

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=94.59  E-value=0.13  Score=31.99  Aligned_cols=44  Identities=18%  Similarity=0.198  Sum_probs=34.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhH---HHHHHHhhhcCCCC-CHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKW---KIISETCTALDVPR-TANQCRRKW   71 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W---~~Ia~~m~~~G~~R-s~~QCr~KW   71 (121)
                      .-.||.+|-..++++....         +...|   +.|++.|.   ..+ |..||++.-
T Consensus         3 r~~WT~eeh~~Fl~ai~~~---------G~g~~a~pk~I~~~~~---~~~lT~~qV~SH~   50 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKL---------GGPDWATPKRILELMV---VDGLTRDQVASHL   50 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHh---------CCCcccchHHHHHHcC---CCCCCHHHHHHHH
Confidence            3569999999999987655         44469   99998887   566 999998753

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=94.08  E-value=0.13  Score=46.26  Aligned_cols=53  Identities=21%  Similarity=0.397  Sum_probs=43.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHH
Q 043001           15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYK   79 (121)
Q Consensus        15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Yk   79 (121)
                      +...|+.+|...|.++=.+.         +..-|+.||..|.   -+||+-||-.||..-++..+
T Consensus       252 nk~~WS~EE~E~L~AiA~A~---------~~~~W~~IA~~Lg---t~RS~yQC~~kF~t~~~~L~  304 (939)
T KOG0049|consen  252 NKEHWSNEEVEKLKALAEAP---------KFVSWPMIALNLG---TNRSSYQCMEKFKTEVSQLS  304 (939)
T ss_pred             chhccChHHHHHHHHHHhcc---------ccccHHHHHHHhC---CCcchHHHHHHHHHHHHHHH
Confidence            35679999999999885444         6789999999865   78999999999987765544

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=93.80  E-value=0.22  Score=37.55  Aligned_cols=58  Identities=16%  Similarity=0.436  Sum_probs=44.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHH-HHHH
Q 043001           15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLID-EYKK   80 (121)
Q Consensus        15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~-~Ykk   80 (121)
                      +..-||.++.+.|-+..-   ...+++...-...++++..|.     ||+.+|.-+|.+.++ .|..
T Consensus         4 rqdawt~e~d~llae~vl---~~i~eg~tql~afe~~g~~L~-----rt~aac~fRwNs~vrk~Yee   62 (170)
T PRK13923          4 RQDAWTQERDGLLAEVVL---RHIREGGTQLKAFEEVGDALK-----RTAAACGFRWNSVVRKQYQE   62 (170)
T ss_pred             hhhhhhhHHHHHHHHHHH---HHHhccchHHHHHHHHHHHHh-----hhHHHHHhHHHHHHHHHHHH
Confidence            456799999999977643   335556666778999999987     999999999975544 4544

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=93.71  E-value=0.19  Score=42.86  Aligned_cols=44  Identities=18%  Similarity=0.644  Sum_probs=36.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHH
Q 043001           15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKW   71 (121)
Q Consensus        15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW   71 (121)
                      ..+.||.+|-..||++....         +.-.|++||+.+.    .+|..+|++-+
T Consensus        71 ~~~~WtadEEilLLea~~t~---------G~GNW~dIA~hIG----tKtkeeck~hy  114 (438)
T KOG0457|consen   71 LDPSWTADEEILLLEAAETY---------GFGNWQDIADHIG----TKTKEECKEHY  114 (438)
T ss_pred             CCCCCChHHHHHHHHHHHHh---------CCCcHHHHHHHHc----ccchHHHHHHH
Confidence            35789999999999975433         6679999999998    89999998743

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=91.67  E-value=0.4  Score=43.25  Aligned_cols=53  Identities=17%  Similarity=0.505  Sum_probs=42.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 043001           15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKK   80 (121)
Q Consensus        15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykk   80 (121)
                      ..+.||.+|...|+++..++         ++.-|-.|-+..=    +||..|||++..|.+..-.|
T Consensus       359 khg~wt~~ED~~L~~AV~~Y---------g~kdw~k~R~~vP----nRSdsQcR~RY~nvL~~s~K  411 (939)
T KOG0049|consen  359 KHGRWTDQEDVLLVCAVSRY---------GAKDWAKVRQAVP----NRSDSQCRERYTNVLNRSAK  411 (939)
T ss_pred             cCCCCCCHHHHHHHHHHHHh---------CccchhhHHHhcC----CccHHHHHHHHHHHHHHhhc
Confidence            35679999999999998777         6677777766654    89999999999988865444

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=91.37  E-value=0.38  Score=42.60  Aligned_cols=62  Identities=21%  Similarity=0.378  Sum_probs=44.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhhCCCCCCCChhhh
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIVRSRTFPKSQTQA   95 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd~~~syw~~~~~r   95 (121)
                      .+.||.+|+..|-....++          +..|.+|++.|.     |.+..|+.+|.++..-=.+   ....-|.-.++.
T Consensus       384 rg~wt~ee~eeL~~l~~~~----------g~~W~~Ig~~lg-----r~P~~crd~wr~~~~~g~~---~~r~~Ws~eEe~  445 (607)
T KOG0051|consen  384 RGKWTPEEEEELKKLVVEH----------GNDWKEIGKALG-----RMPMDCRDRWRQYVKCGSK---RNRGAWSIEEEE  445 (607)
T ss_pred             cCCCCcchHHHHHHHHHHh----------cccHHHHHHHHc-----cCcHHHHHHHHHhhccccc---cccCcchHHHHH
Confidence            4679999998887765433          668999999987     9999999999966532111   355667733333

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=89.66  E-value=0.53  Score=41.26  Aligned_cols=47  Identities=23%  Similarity=0.553  Sum_probs=37.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 043001           15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSL   74 (121)
Q Consensus        15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL   74 (121)
                      .++.|+..|..+|=...         .+-+.+.|..||..+.    .-|+.||+-+|+-.
T Consensus         6 kggvwrntEdeilkaav---------~kyg~nqws~i~sll~----~kt~rqC~~rw~e~   52 (617)
T KOG0050|consen    6 KGGVWRNTEDEVLKAAV---------MKYGKNQWSRIASLLN----RKTARQCKARWEEW   52 (617)
T ss_pred             ecceecccHHHHHHHHH---------HHcchHHHHHHHHHHh----hcchhHHHHHHHHH
Confidence            35679988888776553         2347889999999998    68999999999843

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=88.44  E-value=1.9  Score=33.45  Aligned_cols=45  Identities=20%  Similarity=0.417  Sum_probs=37.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSL   74 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL   74 (121)
                      .+.||.+|..+||++-+.+          +.+|..||..|-    -||...-+--|...
T Consensus        62 rg~fT~eEe~~Ii~lH~~~----------GNrWs~IA~~LP----GRTDNeIKN~Wnt~  106 (238)
T KOG0048|consen   62 RGNFSDEEEDLIIKLHALL----------GNRWSLIAGRLP----GRTDNEVKNHWNTH  106 (238)
T ss_pred             CCCCCHHHHHHHHHHHHHH----------CcHHHHHHhhCC----CcCHHHHHHHHHHH
Confidence            4679999999999986544          567999999998    79999998888744

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	121
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	6e-10

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Length = 86

 Score = 51.0 bits (122), Expect = 6e-10
 Identities = 15/66 (22%), Positives = 25/66 (37%)

Query: 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI 75
             W   E   L      ++     + S+   W+ IS         R+ + C  KW +L+
Sbjct: 4  AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63

Query: 76 DEYKKI 81
           E+KK 
Sbjct: 64 KEFKKA 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	121
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	99.9
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.08
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	98.99
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	98.94
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	98.92
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	98.89
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	98.88
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	98.86
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	98.85
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	98.84
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	98.82
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	98.68
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	98.68
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	98.67
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	98.6
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	98.54
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	98.5
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.5
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	98.49
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	98.48
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	98.45
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	98.45
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	98.43
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	98.42
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	98.29
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.28
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	98.27
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	98.26
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	98.17
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	98.16
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	97.41
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	98.05
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	97.95
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	97.94
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	97.93
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	97.93
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	97.79
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	97.61
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	97.42
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	96.94
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	96.21
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	96.03
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	96.0
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	95.65
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	93.65
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	93.76
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	92.83
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	90.65
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	87.74
2crg_A	70	Metastasis associated protein MTA3; transcription	83.26

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=99.90  E-value=4.7e-24  Score=141.65  Aligned_cols=71  Identities=21%  Similarity=0.338  Sum_probs=68.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhhC
Q 043001           14 QVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIVR   84 (121)
Q Consensus        14 ~~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd~   84 (121)
                      .|.++||++||++||+++++++..|+.++++..+|++||+.|.++||+||+.||+.||+||++.|++|++.
T Consensus         2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~   72 (86)
T 2ebi_A            2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHH   72 (86)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999999999999999999999999999999999999999993

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.08  E-value=3.4e-10  Score=71.32  Aligned_cols=50  Identities=18%  Similarity=0.387  Sum_probs=41.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCC-CCCHHHHHHHHHHHHH
Q 043001           15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDV-PRTANQCRRKWDSLID   76 (121)
Q Consensus        15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~-~Rs~~QCr~KW~nL~~   76 (121)
                      +...||.+|...|+++...+         +...|..||+.+.   + .||+.||+++|.||++
T Consensus        10 kk~~WT~eED~~L~~~V~~~---------G~~~W~~Ia~~~~---~~~Rt~~qcr~Rw~nl~k   60 (64)
T 3sjm_A           10 KKQKWTVEESEWVKAGVQKY---------GEGNWAAISKNYP---FVNRTAVMIKDRWRTMKR   60 (64)
T ss_dssp             CCCCCCHHHHHHHHHHHHHH---------CTTCHHHHHHHSC---CSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHcc---------CCCchHHHHhhcC---CCCCCHHHHHHHHHHHhc
Confidence            35679999999999987655         4457999998753   3 5999999999999974

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=98.99  E-value=1.2e-09  Score=65.82  Aligned_cols=49  Identities=16%  Similarity=0.298  Sum_probs=41.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCC-CCCHHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDV-PRTANQCRRKWDSLID   76 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~-~Rs~~QCr~KW~nL~~   76 (121)
                      ...||.+|...|+++...+         +...|..||..|.   + .||+.||+.+|.||++
T Consensus         2 r~~WT~eEd~~L~~~v~~~---------G~~~W~~Ia~~~~---~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            2 RQAWLWEEDKNLRSGVRKY---------GEGNWSKILLHYK---FNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCHHHHHHHHHHHHHH---------CTTCHHHHHHHSC---CSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHH---------CcCCHHHHHHHcC---CCCCCHHHHHHHHHHHHc
Confidence            3579999999999987655         4468999999974   5 5999999999999974

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=98.94  E-value=3.3e-09  Score=67.14  Aligned_cols=50  Identities=16%  Similarity=0.281  Sum_probs=42.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCC-CCCHHHHHHHHHHHHH
Q 043001           15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDV-PRTANQCRRKWDSLID   76 (121)
Q Consensus        15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~-~Rs~~QCr~KW~nL~~   76 (121)
                      ....||.+|...|+++...+         +...|..||..|.   + .||+.||+.+|.+++.
T Consensus         9 ~r~~WT~eED~~L~~~v~~~---------G~~~W~~Ia~~~~---~~~Rt~~qcr~Rw~~~l~   59 (69)
T 1ity_A            9 KRQAWLWEEDKNLRSGVRKY---------GEGNWSKILLHYK---FNNRTSVMLKDRWRTMKK   59 (69)
T ss_dssp             SCCCCCHHHHHHHHHHHHHH---------CSSCHHHHHHHSC---CSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHH---------CCCcHHHHHHHcC---cCCCCHHHHHHHHHHHcC
Confidence            34679999999999987655         4458999999985   4 7999999999999884

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=98.92  E-value=2.4e-09  Score=64.07  Aligned_cols=47  Identities=23%  Similarity=0.576  Sum_probs=40.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI   75 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~   75 (121)
                      ...||.+|...|+++...+         +...|..||+.|.    .||+.||+.+|.+++
T Consensus         3 ~~~Wt~eED~~L~~~v~~~---------G~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L   49 (52)
T 1guu_A            3 KTRWTREEDEKLKKLVEQN---------GTDDWKVIANYLP----NRTDVQCQHRWQKVL   49 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHH---------CSSCHHHHHHTST----TCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHcC----CCCHHHHHHHHHHHc
Confidence            4579999999999987655         3348999999986    699999999999886

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=98.89  E-value=2.5e-09  Score=65.88  Aligned_cols=47  Identities=23%  Similarity=0.543  Sum_probs=39.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI   75 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~   75 (121)
                      ...||.+|...|+++...+         ....|..||..|.    .||+.||+.+|.+++
T Consensus         8 k~~Wt~eED~~L~~~v~~~---------G~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l   54 (60)
T 2d9a_A            8 KVKWTHEEDEQLRALVRQF---------GQQDWKFLASHFP----NRTDQQCQYRWLRVL   54 (60)
T ss_dssp             CSCCCHHHHHHHHHHHHHT---------CTTCHHHHHHHCS----SSCHHHHHHHHHHTS
T ss_pred             CCCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHcc----CCCHHHHHHHHHHHc
Confidence            4579999999999987544         3358999999986    699999999999875

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.88  E-value=3e-09  Score=67.43  Aligned_cols=47  Identities=23%  Similarity=0.560  Sum_probs=40.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI   75 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~   75 (121)
                      ...||.+|...|+++...+         ....|..||..|.    .||++||+.+|.+++
T Consensus         9 ~~~Wt~eED~~L~~~v~~~---------G~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~L   55 (70)
T 2dim_A            9 GGVWRNTEDEILKAAVMKY---------GKNQWSRIASLLH----RKSAKQCKARWYEWL   55 (70)
T ss_dssp             TCCCCHHHHHHHHHHHHHT---------CSSCHHHHHHHST----TCCHHHHHHHHHHTS
T ss_pred             CCCCCHHHHHHHHHHHHHH---------CcCCHHHHHHHhc----CCCHHHHHHHHHHHc
Confidence            4679999999999987644         3368999999986    799999999999865

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=98.86  E-value=2.6e-09  Score=64.02  Aligned_cols=47  Identities=21%  Similarity=0.550  Sum_probs=39.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI   75 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~   75 (121)
                      ...||.+|...|+++...+         +...|..||..|.    .||+.||+.+|.+++
T Consensus         3 k~~Wt~eED~~L~~~v~~~---------G~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L   49 (52)
T 1gvd_A            3 KGPWTKEEDQRLIKLVQKY---------GPKRWSVIAKHLK----GRIGKQCRERWHNHL   49 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHH---------CTTCHHHHHTTST----TCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHH---------CcChHHHHHHHcC----CCCHHHHHHHHHHHc
Confidence            4579999999999987654         3346999999985    799999999999865

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=98.85  E-value=7.8e-09  Score=63.85  Aligned_cols=47  Identities=15%  Similarity=0.572  Sum_probs=40.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI   75 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~   75 (121)
                      ...||.+|...|+++...+         ....|..||+.|.    .||+.||+.+|.+++
T Consensus         8 ~~~WT~eED~~L~~~v~~~---------G~~~W~~Ia~~~~----~Rt~~qcr~r~~~~l   54 (60)
T 1x41_A            8 DPSWTAQEEMALLEAVMDC---------GFGNWQDVANQMC----TKTKEECEKHYMKYF   54 (60)
T ss_dssp             CSSSCHHHHHHHHHHHHHT---------CTTCHHHHHHHHT----TSCHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHH---------CcCcHHHHHHHhC----CCCHHHHHHHHHHHc
Confidence            4579999999999987544         3368999999996    699999999999875

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=98.84  E-value=4.6e-09  Score=68.71  Aligned_cols=57  Identities=28%  Similarity=0.558  Sum_probs=45.0

Q ss_pred             CCCCCcccCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 043001            4 GSSRTRHTRSQ-----VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSL   74 (121)
Q Consensus         4 g~~~~~~~r~~-----~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL   74 (121)
                      |++|+++.+..     ....||.+|.+.|+++...+         . ..|..||+.|.    .||+.||+.+|.+|
T Consensus         1 ~ssg~~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~---------G-~~W~~IA~~v~----~RT~~qcr~r~~~~   62 (79)
T 2yus_A            1 GSSGSSGTLAKSKGASAGREWTEQETLLLLEALEMY---------K-DDWNKVSEHVG----SRTQDECILHFLRL   62 (79)
T ss_dssp             CCCSSSCCCCCCCSSCCSCCCCHHHHHHHHHHHHHS---------S-SCHHHHHHHHS----SCCHHHHHHHHTTS
T ss_pred             CCCcccCccCCccccccCCCcCHHHHHHHHHHHHHh---------C-CCHHHHHHHcC----CCCHHHHHHHHHHh
Confidence            56666654432     34679999999999986544         2 68999999986    69999999999876

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=98.82  E-value=1.5e-08  Score=62.30  Aligned_cols=48  Identities=21%  Similarity=0.477  Sum_probs=39.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI   75 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~   75 (121)
                      ...||.+|...|+++...+         +...|..||+.|.   -.||+.||+.+|.++.
T Consensus         9 ~~~WT~eED~~L~~~v~~~---------G~~~W~~IA~~~~---~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            9 DENWGADEELLLIDACETL---------GLGNWADIADYVG---NARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCCCCHHHHHHHHHHHHHT---------TTTCHHHHHHHHC---SSCCHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHH---------CcCCHHHHHHHHC---CCCCHHHHHHHHHHHc
Confidence            3569999999999987544         4468999999984   4699999999998763

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.68  E-value=5.9e-08  Score=62.08  Aligned_cols=53  Identities=17%  Similarity=0.228  Sum_probs=40.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLID   76 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~   76 (121)
                      ...||.+|...|+++...+    .........|..||+.|.    .||+.||+.+|.+++.
T Consensus         8 ~~~WT~eEd~~L~~~v~~~----g~~~~~~~~W~~IA~~~~----~Rt~~qcr~r~~~~l~   60 (75)
T 2yum_A            8 NQLWTVEEQKKLEQLLIKY----PPEEVESRRWQKIADELG----NRTAKQVASQVQKYFI   60 (75)
T ss_dssp             SSCCCHHHHHHHHHHHHHS----CCCSCHHHHHHHHHHHHS----SSCHHHHHHHHHHHHG
T ss_pred             CCCCCHHHHHHHHHHHHHh----CCCCCCcccHHHHHHHhC----CCCHHHHHHHHHHHHH
Confidence            4579999999999986543    111112379999999997    6999999999987663

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.68  E-value=7.1e-08  Score=60.35  Aligned_cols=50  Identities=26%  Similarity=0.472  Sum_probs=40.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKK   80 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykk   80 (121)
                      ...||.+|...|+++...+          ...|..||+ |-  |  ||+.||+.+|.+++..-.+
T Consensus         9 k~~WT~eED~~L~~~~~~~----------g~~W~~Ia~-~~--g--Rt~~qcr~Rw~~~l~~~~~   58 (66)
T 2din_A            9 KTEWSREEEEKLLHLAKLM----------PTQWRTIAP-II--G--RTAAQCLEHYEFLLDKAAQ   58 (66)
T ss_dssp             CCCCCHHHHHHHHHHHHHC----------TTCHHHHHH-HH--S--SCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHc----------CCCHHHHhc-cc--C--cCHHHHHHHHHHHhChHhc
Confidence            4569999999999985432          238999999 54  3  9999999999999876544

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.67  E-value=7.9e-08  Score=61.22  Aligned_cols=48  Identities=19%  Similarity=0.322  Sum_probs=40.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDE   77 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~   77 (121)
                      ...||.+|...|+++...+          +..|..||..|.    .||..||+.+|.++++.
T Consensus         9 ~~~WT~eEd~~l~~~~~~~----------G~~W~~Ia~~~~----~Rt~~q~k~r~~~~l~~   56 (72)
T 2cu7_A            9 SVKWTIEEKELFEQGLAKF----------GRRWTKISKLIG----SRTVLQVKSYARQYFKN   56 (72)
T ss_dssp             CCCCCHHHHHHHHHHHHHT----------CSCHHHHHHHHS----SSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH----------CcCHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence            4679999999999987644          239999999986    69999999999988754

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=98.60  E-value=7.2e-08  Score=66.26  Aligned_cols=88  Identities=18%  Similarity=0.285  Sum_probs=55.3

Q ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhh
Q 043001            4 GSSRTRHTRSQVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIV   83 (121)
Q Consensus         4 g~~~~~~~r~~~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd   83 (121)
                      |++.+.....-....||.+|+.+|++....+         +...|..|+..+...=-.||..||++||.||++.-. +  
T Consensus         1 ~s~~~~~~~rr~r~~WT~EEd~~L~~gV~k~---------G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~-~--   68 (105)
T 2aje_A            1 GSHMLEDPQRRIRRPFSVAEVEALVQAVEKL---------GTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK-I--   68 (105)
T ss_dssp             --------CCCCCCSCCHHHHHHHHHHHHHH---------CSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT-C--
T ss_pred             CCCCccccCCCCCCCCCHHHHHHHHHHHHHh---------CCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc-C--
Confidence            5566666666667789999999999987655         445899999865211026999999999999985310 0  


Q ss_pred             CCCCCCCChhhhhhcCCCCCCcHHHHH
Q 043001           84 RSRTFPKSQTQAHTDCFPPNFDRELFK  110 (121)
Q Consensus        84 ~~~syw~~~~~rk~~~LP~~fd~e~f~  110 (121)
                             ++..|+..-+|..|-..|-+
T Consensus        69 -------~p~~~rg~~~P~~~l~rv~~   88 (105)
T 2aje_A           69 -------SPQQRRGEPVPQELLNRVLN   88 (105)
T ss_dssp             -------CTTTTTCCSCCCHHHHHHHH
T ss_pred             -------CcccccCCCCCHHHHHHHHH
Confidence                   12235566777665444443

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.54  E-value=1.8e-07  Score=60.27  Aligned_cols=50  Identities=14%  Similarity=0.409  Sum_probs=40.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 043001           17 PDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLID   76 (121)
Q Consensus        17 ~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~   76 (121)
                      ..||.+|.++|+++...+      +......|..||..|-    .||.+||+.+|.+|+.
T Consensus        19 ~~WT~eEd~~L~~al~~~------g~~~~~rW~~IA~~vp----GRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           19 EPWTQNQQKLLELALQQY------PRGSSDCWDKIARCVP----SKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CCCCHHHHHHHHHHHHHS------CSSSHHHHHHHGGGCS----SSCHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHc------CCCCCchHHHHHHHcC----CCCHHHHHHHHHHHHH
Confidence            569999999999986543      1123579999999986    6999999999999974

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=98.50  E-value=1.7e-07  Score=63.57  Aligned_cols=46  Identities=26%  Similarity=0.553  Sum_probs=39.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001           17 PDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI   75 (121)
Q Consensus        17 ~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~   75 (121)
                      +.||.+|...|+++...+         +...|..||+.|.    .||+.||+.+|.+++
T Consensus         2 ~~Wt~eED~~L~~~v~~~---------g~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L   47 (107)
T 2k9n_A            2 VKFTEEEDLKLQQLVMRY---------GAKDWIRISQLMI----TRNPRQCRERWNNYI   47 (107)
T ss_dssp             CSSCHHHHHHHHHHHHHH---------CSSCHHHHHHHTT----TSCHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHH---------CCCCHHHHhhhcC----CCCHHHHHHHHHHHH
Confidence            469999999999987654         3458999999986    699999999999765

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.50  E-value=4.4e-07  Score=61.03  Aligned_cols=59  Identities=20%  Similarity=0.451  Sum_probs=47.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhhC
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIVR   84 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd~   84 (121)
                      ...||.+|..+|+++...+      .......|..||..|-    .||.+||+.+|.+|..+-+.|..+
T Consensus         8 ~~~WT~eEd~~L~~al~~~------~~~~~~rW~~IA~~vp----GRT~~q~k~ry~~l~~dv~~iesg   66 (93)
T 2cjj_A            8 GRPWSAKENKAFERALAVY------DKDTPDRWANVARAVE----GRTPEEVKKHYEILVEDIKYIESG   66 (93)
T ss_dssp             CCSCCHHHHHHHHHHHHHS------CTTCTTHHHHHHHHST----TCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHc------CCCCCchHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHhhcC
Confidence            4579999999999876433      1123579999999986    599999999999999988777663

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=98.49  E-value=7.3e-07  Score=62.73  Aligned_cols=54  Identities=15%  Similarity=0.290  Sum_probs=43.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 043001           15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDE   77 (121)
Q Consensus        15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~   77 (121)
                      ....||.+|+..|++....+         +...|..|+..+...=-.||..||++||.||++.
T Consensus        30 ~r~~WT~EEd~~L~~gV~k~---------G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~   83 (122)
T 2roh_A           30 IRRPFTVAEVELLVEAVEHL---------GTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT   83 (122)
T ss_dssp             CCCCCCHHHHHHHHHHHHHH---------SSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHH---------CCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            34579999999999987665         4458999999764211369999999999999864

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=98.48  E-value=3.4e-07  Score=60.35  Aligned_cols=72  Identities=17%  Similarity=0.277  Sum_probs=49.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhhCCCCCCCChhhhhh
Q 043001           18 DWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIVRSRTFPKSQTQAHT   97 (121)
Q Consensus        18 ~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd~~~syw~~~~~rk~   97 (121)
                      .||.+|+..|++....+         +...|..|+..-...=-.||..||++||.||++.- .+         ++..++.
T Consensus         2 ~WT~eEd~~L~~gv~k~---------G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~-~~---------~p~~~~~   62 (83)
T 2ckx_A            2 PFSVAEVEALVEAVEHL---------GTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA-SI---------APQQRRG   62 (83)
T ss_dssp             CCCHHHHHHHHHHHHHH---------CSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH-HS---------CGGGCCS
T ss_pred             CCCHHHHHHHHHHHHHH---------CCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc-cC---------CcccccC
Confidence            69999999999987655         44589999996221112699999999999998642 22         1122445


Q ss_pred             cCCCCCCcHHH
Q 043001           98 DCFPPNFDREL  108 (121)
Q Consensus        98 ~~LP~~fd~e~  108 (121)
                      ..+|+.+..-|
T Consensus        63 ~~~p~~~~~rv   73 (83)
T 2ckx_A           63 EPVPQDLLDRV   73 (83)
T ss_dssp             SCCCHHHHHHH
T ss_pred             CCCCHHHHHHH
Confidence            66676554444

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=98.45  E-value=3e-07  Score=64.13  Aligned_cols=48  Identities=27%  Similarity=0.612  Sum_probs=40.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001           14 QVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI   75 (121)
Q Consensus        14 ~~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~   75 (121)
                      .....||.+|...|+++...+         + ..|..||+.|.    .||+.||+.+|.+.+
T Consensus         9 ~kk~~WT~eED~~L~~~v~~~---------G-~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l   56 (126)
T 3osg_A            9 AKKQKFTPEEDEMLKRAVAQH---------G-SDWKMIAATFP----NRNARQCRDRWKNYL   56 (126)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHH---------T-TCHHHHHHTCT----TCCHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHh---------C-CCHHHHHHHcC----CCCHHHHHHHHhhhc
Confidence            345679999999999987655         2 28999999876    699999999999866

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=98.45  E-value=9e-07  Score=62.18  Aligned_cols=54  Identities=17%  Similarity=0.292  Sum_probs=44.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 043001           15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDE   77 (121)
Q Consensus        15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~   77 (121)
                      ....||.+|+..|++....+         +...|..|+..+...--.||..||++||.||++.
T Consensus        16 ~r~~WT~EEd~~L~~gV~k~---------G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~   69 (121)
T 2juh_A           16 IRRPFSVAEVEALVEAVEHL---------GTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT   69 (121)
T ss_dssp             SSCCCCHHHHHHHHHHHHHH---------GGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHH---------CCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            34579999999999987665         4559999999975322369999999999999965

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=98.43  E-value=2.2e-07  Score=62.57  Aligned_cols=47  Identities=19%  Similarity=0.535  Sum_probs=39.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI   75 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~   75 (121)
                      .+.||.+|...|+++...+         +...|..||+.|.    .||+.||+.+|.+++
T Consensus         4 k~~WT~eED~~L~~~v~~~---------g~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l   50 (105)
T 1gv2_A            4 KGPWTKEEDQRVIKLVQKY---------GPKRWSVIAKHLK----GRIGKQCRERWHNHL   50 (105)
T ss_dssp             CSCCCHHHHHHHHHHHHHH---------CTTCHHHHHTTST----TCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHh---------CCCcHHHHhhhhc----CCCHHHHHHHHHhcc
Confidence            4679999999999987544         3347999999885    799999999999864

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=98.42  E-value=4.6e-07  Score=58.40  Aligned_cols=46  Identities=15%  Similarity=0.185  Sum_probs=38.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLID   76 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~   76 (121)
                      ...||.+|...|+++...+          +..|..||+.|     .||..||+.+|..|.+
T Consensus        23 k~~wT~EED~~L~~l~~~~----------G~kW~~IA~~l-----gRt~~q~knRw~~L~~   68 (73)
T 2llk_A           23 VGKYTPEEIEKLKELRIKH----------GNDWATIGAAL-----GRSASSVKDRCRLMKD   68 (73)
T ss_dssp             CCSSCHHHHHHHHHHHHHH----------SSCHHHHHHHH-----TSCHHHHHHHHHHCSC
T ss_pred             CCCCCHHHHHHHHHHHHHH----------CCCHHHHHHHh-----CCCHHHHHHHHHHHHH
Confidence            4579999999999987655          34599999998     4999999999997753

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=98.29  E-value=8.3e-07  Score=61.78  Aligned_cols=47  Identities=19%  Similarity=0.509  Sum_probs=39.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI   75 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~   75 (121)
                      ...||.+|...|+++...+         +...|..||+.|.    .||+.||+.+|.+++
T Consensus        27 k~~Wt~eED~~L~~~v~~~---------g~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l   73 (128)
T 1h8a_C           27 KGPWTKEEDQRVIEHVQKY---------GPKRWSDIAKHLK----GRIGKQCRERWHNHL   73 (128)
T ss_dssp             CSCCCHHHHHHHHHHHHHT---------CSCCHHHHHHHSS----SCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHH---------CCCCHHHHHHHhc----CCcHHHHHHHHHHhc
Confidence            4579999999999986544         3347999999986    799999999999865

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.28  E-value=2.6e-06  Score=54.66  Aligned_cols=51  Identities=18%  Similarity=0.371  Sum_probs=41.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDE   77 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~   77 (121)
                      ...||.+|...|+++....    .  .....+|+.||+.|   |  ||++||+.+|+.|..+
T Consensus         8 ~~~WT~eE~k~fe~al~~~----p--~~t~~RW~~IA~~l---g--Rt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            8 APEWTEEDLSQLTRSMVKF----P--GGTPGRWEKIAHEL---G--RSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCHHHHHHHHHHHHHS----C--TTCTTHHHHHHHHH---T--SCHHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHC----C--CCCCcHHHHHHHHh---C--CCHHHHHHHHHHHHHh
Confidence            5679999999999986533    1  11247899999998   3  9999999999999866

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=98.27  E-value=3.1e-07  Score=64.39  Aligned_cols=47  Identities=19%  Similarity=0.413  Sum_probs=39.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI   75 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~   75 (121)
                      .+.||.+|...|+++...+         +...|..||..|-    .||+.||+.+|.+.+
T Consensus         2 Kg~Wt~eED~~L~~~v~~~---------g~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l   48 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKEN---------GPQNWPRITSFLP----NRSPKQCRERWFNHL   48 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHH---------CSCCGGGGTTSCT----TSCHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHh---------CcCCHHHHHHHHC----CCCHHHHHHHHhhcc
Confidence            3579999999999987654         3457999999885    699999999999876

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=98.26  E-value=2.1e-06  Score=58.14  Aligned_cols=48  Identities=27%  Similarity=0.520  Sum_probs=41.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDE   77 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~   77 (121)
                      ...||.+|...|+++...+          +..|..||..|-    .||..||+.+|.+|++.
T Consensus        53 ~~~WT~eEd~~L~~~~~~~----------G~~W~~Ia~~l~----gRt~~~~k~rw~~l~r~  100 (107)
T 2k9n_A           53 TDPWSPEEDMLLDQKYAEY----------GPKWNKISKFLK----NRSDNNIRNRWMMIARH  100 (107)
T ss_dssp             TCCCCHHHHHHHHHHHHHT----------CSCHHHHHHHHS----SSCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHHh----------CcCHHHHHHHCC----CCCHHHHHHHHHHHHhh
Confidence            4679999999999987544          247999999985    79999999999999865

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=98.17  E-value=3e-06  Score=59.00  Aligned_cols=48  Identities=21%  Similarity=0.500  Sum_probs=40.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDE   77 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~   77 (121)
                      ...||.+|...|+++...+          +..|..||+.|-    .||..||+.+|.+|++.
T Consensus        62 ~~~WT~eEd~~L~~~v~~~----------G~~W~~Ia~~l~----gRt~~~~k~rw~~l~~k  109 (126)
T 3osg_A           62 HTPWTAEEDALLVQKIQEY----------GRQWAIIAKFFP----GRTDIHIKNRWVTISNK  109 (126)
T ss_dssp             CSCCCHHHHHHHHHHHHHH----------CSCHHHHHTTST----TCCHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHH----------CcCHHHHHHHcC----CCCHHHHHHHHHHHHHh
Confidence            4579999999999987655          257999999875    69999999999998854

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=98.16  E-value=1.9e-06  Score=57.88  Aligned_cols=47  Identities=21%  Similarity=0.461  Sum_probs=39.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLID   76 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~   76 (121)
                      ...||.+|...|+++...+          +..|..||+.|-    .||..||+.+|.+|++
T Consensus        56 ~~~Wt~eEd~~L~~~~~~~----------G~~W~~Ia~~l~----gRt~~~~k~rw~~~~~  102 (105)
T 1gv2_A           56 KTSWTEEEDRIIYQAHKRL----------GNRWAEIAKLLP----GRTDNAIKNHWNSTMR  102 (105)
T ss_dssp             CCCCCHHHHHHHHHHHHHH----------SSCHHHHHTTCT----TCCHHHHHHHHHHHTC
T ss_pred             ccCCCHHHHHHHHHHHHHh----------CCCHHHHHHHcC----CCCHHHHHHHHHHHHh
Confidence            4579999999999987655          357999999875    6999999999998864

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=97.41  E-value=3.2e-07  Score=60.84  Aligned_cols=49  Identities=14%  Similarity=0.278  Sum_probs=41.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEY   78 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Y   78 (121)
                      ...||.+|...||++...+          +..|..||..|.    .||..||+.+|.++++.+
T Consensus        16 ~~~WT~eEd~~l~~~~~~~----------G~~W~~IA~~l~----gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A           16 FQGWTEEEMGTAKKGLLEH----------GRNWSAIARMVG----SKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            4579999999999987654          236999999986    799999999999988664

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=98.05  E-value=4.8e-06  Score=59.77  Aligned_cols=47  Identities=19%  Similarity=0.535  Sum_probs=39.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI   75 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~   75 (121)
                      ...||.+|...|+++...+         +...|..||..|.    .||+.||+.+|.+++
T Consensus        58 ~~~Wt~eEd~~L~~~v~~~---------g~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l  104 (159)
T 1h89_C           58 KGPWTKEEDQRVIKLVQKY---------GPKRWSVIAKHLK----GRIGKQCRERWHNHL  104 (159)
T ss_dssp             CSCCCHHHHHHHHHHHHHH---------CSCCHHHHHHTST----TCCHHHHHHHHHHTT
T ss_pred             CCCCChHHHHHHHHHHHHh---------CcccHHHHHHHcC----CCCHHHHHHHHHHHh
Confidence            4679999999999987544         3346999999985    699999999999865

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=97.95  E-value=8.5e-07  Score=63.75  Aligned_cols=47  Identities=23%  Similarity=0.576  Sum_probs=8.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI   75 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~   75 (121)
                      ...||.+|...|+++...+         +...|..||+.|.    .||+.||+.+|.+++
T Consensus         6 k~~Wt~eED~~L~~~v~~~---------g~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l   52 (159)
T 1h89_C            6 KTRWTREEDEKLKKLVEQN---------GTDDWKVIANYLP----NRTDVQCQHRWQKVL   52 (159)
T ss_dssp             --------------------------------------------------CHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHcC----CCCHHHHHHHHHHcc
Confidence            4579999999999987544         3457999999986    699999999998764

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.94  E-value=3.7e-05  Score=47.37  Aligned_cols=55  Identities=18%  Similarity=0.291  Sum_probs=42.6

Q ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHH
Q 043001            4 GSSRTRHTRSQVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDS   73 (121)
Q Consensus         4 g~~~~~~~r~~~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~n   73 (121)
                      |++++.+.| .....||.+|..+|++....+          ...|..||..|-    .||..||...|..
T Consensus         1 ~~~~~~~~r-~~~~~WT~eE~~~F~~~~~~~----------gk~w~~Ia~~l~----~rt~~~~v~~Yy~   55 (61)
T 2eqr_A            1 GSSGSSGDR-QFMNVWTDHEKEIFKDKFIQH----------PKNFGLIASYLE----RKSVPDCVLYYYL   55 (61)
T ss_dssp             CCCSCCCCC-SCCCSCCHHHHHHHHHHHHHS----------TTCHHHHHHHCT----TSCHHHHHHHHHH
T ss_pred             CCCcccccc-ccCCCCCHHHHHHHHHHHHHh----------CCCHHHHHHHcC----CCCHHHHHHHHHH
Confidence            445565566 456779999999999987544          348999998876    7999999987754

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=97.93  E-value=5e-06  Score=58.10  Aligned_cols=47  Identities=23%  Similarity=0.485  Sum_probs=39.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLID   76 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~   76 (121)
                      ...||.+|...|+++...+          +..|..||..|-    .||..||+.+|.++++
T Consensus        54 ~~~Wt~eEd~~L~~~~~~~----------G~~W~~Ia~~l~----gRt~~~~k~rw~~~l~  100 (131)
T 3zqc_A           54 KHAWTPEEDETIFRNYLKL----------GSKWSVIAKLIP----GRTDNAIKNRWNSSIS  100 (131)
T ss_dssp             CSCCCHHHHHHHHHHHHHS----------CSCHHHHTTTST----TCCHHHHHHHHHHTTG
T ss_pred             CCCCCHHHHHHHHHHHHHH----------CcCHHHHHHHcC----CCCHHHHHHHHHHHHH
Confidence            3579999999999986544          357999999875    6999999999998874

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=97.93  E-value=5.5e-06  Score=57.57  Aligned_cols=47  Identities=21%  Similarity=0.468  Sum_probs=39.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLID   76 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~   76 (121)
                      ...||.+|...|+++...+          +..|..||+.|-    .||..||+.+|.+|++
T Consensus        79 ~~~WT~eEd~~L~~~~~~~----------G~~W~~Ia~~l~----gRt~~~~k~r~~~~~~  125 (128)
T 1h8a_C           79 KTSWTEEEDRIIYQAHKRL----------GNRWAEIAKLLP----GRTDNAVKNHWNSTMR  125 (128)
T ss_dssp             CSCCCHHHHHHHHHHHHHH----------CSCHHHHGGGST----TCCHHHHHHHHHTTTT
T ss_pred             cccCCHHHHHHHHHHHHHH----------CcCHHHHHHHCC----CCCHHHHHHHHHHHHh
Confidence            4679999999999987655          357999999875    6999999999998764

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=97.79  E-value=5.5e-05  Score=48.68  Aligned_cols=50  Identities=20%  Similarity=0.392  Sum_probs=38.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI   75 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~   75 (121)
                      ...||.+|.++|.++....      .......|+.||+.+-    .||+.+|+.++..|.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~------~~~tp~rWe~IA~~V~----gKT~eE~~~hY~~l~   57 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASL------PKHKPGFWSEVAAAVG----SRSPEECQRKYMENP   57 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHS------CSSSSSHHHHHHHHTT----TSCHHHHHHHHHHSS
T ss_pred             CCCCCHHHHHHHHHHHHHC------CCCCccHHHHHHHHcC----CCCHHHHHHHHHHHH
Confidence            3579999999999876433      1123568999999976    499999999887664

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=97.61  E-value=0.00011  Score=45.87  Aligned_cols=50  Identities=20%  Similarity=0.270  Sum_probs=40.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLID   76 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~   76 (121)
                      ...||.+|+..|++....+         +. .|..|+..-.- =-.||.-.-++||.||.+
T Consensus         8 r~~WT~EE~~~L~~gV~k~---------G~-~W~~I~~~y~f-~~~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            8 RKDFTKEEVNYLFHGVKTM---------GN-HWNSILWSFPF-QKGRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             SSSCCHHHHHHHHHHHHHH---------CS-CHHHHHHHSCC-CTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHH---------hH-hHHHHHHhCCC-ccCcccchHHHHHHHHHh
Confidence            4579999999999987766         33 89999975321 127999999999999974

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=97.42  E-value=7.6e-05  Score=57.85  Aligned_cols=54  Identities=11%  Similarity=0.171  Sum_probs=40.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDE   77 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~   77 (121)
                      ...||.+|...||++.+.+    .....+...|.+||..|-    .||+.|||.+|.++++.
T Consensus         8 k~~FT~EED~~Ile~v~k~----Gn~r~ghk~W~~IAk~Lp----GRT~nsIRnRw~~~L~~   61 (246)
T 1ign_A            8 KASFTDEEDEFILDVVRKN----PTRRTTHTLYDEISHYVP----NHTGNSIRHRFRVYLSK   61 (246)
T ss_dssp             CCCCCHHHHHHHHHHHHTS----GGGTTCSHHHHHHTTTST----TSCHHHHHHHHHHTTGG
T ss_pred             CCCCCHHHHHHHHHHHHHh----CcCccccccHHHHHHHcC----CCCHHHHHHHHHHHHhh
Confidence            4579999999999986543    111112345999999887    79999999999997743

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=96.94  E-value=0.0012  Score=50.87  Aligned_cols=49  Identities=14%  Similarity=0.267  Sum_probs=40.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 043001           15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDE   77 (121)
Q Consensus        15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~   77 (121)
                      ...+||.+|.+.|+++.+.+          +..|..||+.+.    .||..||+.-|.+..+.
T Consensus       132 ~s~~WTeEE~~lFleAl~kY----------GKDW~~IAk~Vg----TKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKY----------GRDFQAISDVIG----NKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHH----------SSCHHHHHHHHS----SCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHH----------CcCHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence            35689999999999987655          346999999987    79999999999876655

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.21  E-value=0.037  Score=36.96  Aligned_cols=58  Identities=10%  Similarity=0.225  Sum_probs=48.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhh
Q 043001           15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIV   83 (121)
Q Consensus        15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd   83 (121)
                      .---||++|...++.+       |+......+.|..||+.|.    +|++.|-..+|.-|++-|.+...
T Consensus        32 ~VvlWTRe~DR~IL~~-------cQ~~G~s~~tFa~iA~~L~----Nks~nqV~~RFq~Lm~Lf~~~~~   89 (95)
T 1ug2_A           32 KVVLWTREADRVILTM-------CQEQGAQPHTFSVISQQLG----NKTPVEVSHRFRELMQLFHTACE   89 (95)
T ss_dssp             CCSSSCHHHHHHHHHH-------HHHTTSCTTTHHHHHHHHS----SCCHHHHHHHHHHHHHHHHHCSS
T ss_pred             EEEEeccccCHHHHHH-------HHhcCCChhHHHHHHHHHc----cCCHHHHHHHHHHHHHHHHHHhc
Confidence            3356999999988876       3444455779999999998    89999999999999999988654

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=96.03  E-value=0.026  Score=37.61  Aligned_cols=56  Identities=9%  Similarity=0.192  Sum_probs=46.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHHHHhh
Q 043001           17 PDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDV-PRTANQCRRKWDSLIDEYKKII   82 (121)
Q Consensus        17 ~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~-~Rs~~QCr~KW~nL~~~Ykkik   82 (121)
                      +.||.+||..|+++-...          ..+|-.|++...-.++ .||..+=+.++..+.+...+.+
T Consensus        31 ~~WTkEETd~Lf~L~~~f----------dlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r   87 (93)
T 3hm5_A           31 DAWTKAETDHLFDLSRRF----------DLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHT----------TTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHh----------CCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            689999999999986533          5589999999875443 6999999999999998877665

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=96.00  E-value=0.0066  Score=37.08  Aligned_cols=52  Identities=6%  Similarity=0.176  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHH-HhhhcCCCCCHHHHHHHHHH
Q 043001           17 PDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISE-TCTALDVPRTANQCRRKWDS   73 (121)
Q Consensus        17 ~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~-~m~~~G~~Rs~~QCr~KW~n   73 (121)
                      ..+|.+|..+|+....+.... ....++..+|+++++ .+-    .+|..+||++|.+
T Consensus         3 ~~FT~edD~~L~~~v~~~~~~-~~~~~Gn~iwk~la~~~~~----~HtwqSwRdRy~k   55 (59)
T 1fex_A            3 IAFTDADDVAILTYVKENARS-PSSVTGNALWKAMEKSSLT----QHSWQSLKDRYLK   55 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHTCCS-TTTTTSSHHHHHHHHSCSS----SCCSHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhccc-cCCCccHHHHHHHHHhHCC----CCCHHHHHHHHHH
Confidence            459999999999987655321 134457789999999 543    8999999999975

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=95.65  E-value=0.018  Score=48.48  Aligned_cols=44  Identities=16%  Similarity=0.308  Sum_probs=36.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHH
Q 043001           15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWD   72 (121)
Q Consensus        15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~   72 (121)
                      ...+||.+|.+.|++....+          +..|..||+.+.    .||..||+.-+.
T Consensus       379 ~~~~WT~eE~~~f~~al~~y----------Gkdw~~IA~~Vg----TKT~~Qvk~fy~  422 (482)
T 2xag_B          379 CNARWTTEEQLLAVQAIRKY----------GRDFQAISDVIG----NKSVVQVKNFFV  422 (482)
T ss_dssp             CCSCCCHHHHHHHHHHHHHH----------TTCHHHHHHHHS----SCCHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHH----------CcCHHHHHHHhC----CCCHHHHHHHHH
Confidence            46789999999999987655          337999999987    899999998653

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=93.65  E-value=0.0058  Score=38.79  Aligned_cols=55  Identities=16%  Similarity=0.302  Sum_probs=44.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhh
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKII   82 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkik   82 (121)
                      ---||++|...++..       |+........|..||+.|     +||+.|-..++.-|++-|++-|
T Consensus        14 vvlWTReeDR~IL~~-------cq~~G~s~~tfa~iA~~L-----nks~~QV~~RF~~Lm~Lf~kSk   68 (70)
T 2lr8_A           14 IILWTRNDDRVILLE-------CQKRGPSSKTFAYLAAKL-----DKNPNQVSERFQQLMKLFEKSK   68 (70)
Confidence            346999999988865       444444567999999887     4999999999999999998754

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.76  E-value=0.19  Score=30.64  Aligned_cols=40  Identities=8%  Similarity=0.091  Sum_probs=31.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHH-hhhcCCCCCHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISET-CTALDVPRTANQCRR   69 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~-m~~~G~~Rs~~QCr~   69 (121)
                      .+.||.+|...+.+....+          ...|..|+.. +.    .||..||..
T Consensus         9 ~~~WT~eE~~~Fe~~l~~y----------GKdf~~I~~~~v~----~Kt~~~~v~   49 (63)
T 2yqk_A            9 EKCWTEDEVKRFVKGLRQY----------GKNFFRIRKELLP----NKETGELIT   49 (63)
T ss_dssp             CCSCCHHHHHHHHHHHHHT----------CSCHHHHHHHSCT----TSCHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHh----------CccHHHHHHHHcC----CCcHHHHHH
Confidence            4789999999998876544          2259999985 54    699999964

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=92.83  E-value=0.48  Score=31.47  Aligned_cols=58  Identities=9%  Similarity=0.177  Sum_probs=45.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHHHHHhhh
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALD-VPRTANQCRRKWDSLIDEYKKIIV   83 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G-~~Rs~~QCr~KW~nL~~~Ykkikd   83 (121)
                      .+.||.+||..|+++-+..          .-+|-.|++.-.-.+ -.||..+=+.++-.+.+..-+++.
T Consensus        30 ~~~WT~eETd~LfdLc~~f----------dlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~   88 (93)
T 4iej_A           30 DDAWTKAETDHLFDLSRRF----------DLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             BTTBCHHHHHHHHHHHHHT----------TTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHc----------CCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence            3689999999999985533          448999999875332 379999999999999887776654

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=90.65  E-value=0.014  Score=37.49  Aligned_cols=46  Identities=15%  Similarity=0.399  Sum_probs=33.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHH
Q 043001           15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRK   70 (121)
Q Consensus        15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~K   70 (121)
                      .+..||.+|.++|-++.+..      ......+|+.||+.+-    .||+.+|+..
T Consensus        19 ss~~WT~eE~K~FE~ALa~y------p~~tpdRWekIA~~Vp----GKT~eEVk~h   64 (74)
T 4eef_G           19 SGRPWKFSENIAFEIALSFT------NKDTPDRWKKVAQYVK----GRTPEEVKKH   64 (74)
T ss_dssp             ---CCCTTHHHHHHHHTSSS------CSSCCSSSTTTGGGSC----SSCHHHHHGG
T ss_pred             CCCCCCHHHHHHHHHHHHHC------CCCCCcHHHHHHHHcC----CCCHHHHHHH
Confidence            35679999999998875322      1234679999999876    4999999864

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=87.74  E-value=0.61  Score=30.60  Aligned_cols=40  Identities=15%  Similarity=0.258  Sum_probs=31.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRR   69 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~   69 (121)
                      ...||.+|..++.+....+          ...|..||+.|.    .||..||-.
T Consensus        43 ~~~WT~eE~~~F~~~~~~~----------gK~F~~Ia~~l~----~Kt~~~cV~   82 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQH----------PKNFGLIASFLE----RKTVAECVL   82 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHS----------TTCHHHHHHTCT----TCCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHc----------CCCHHHHHHHcC----CCCHHHHHH
Confidence            4679999999998876433          346999988776    799999964

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=83.26  E-value=1.9  Score=26.57  Aligned_cols=42  Identities=12%  Similarity=0.178  Sum_probs=31.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHH-hhhcCCCCCHHHHHH
Q 043001           14 QVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISET-CTALDVPRTANQCRR   69 (121)
Q Consensus        14 ~~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~-m~~~G~~Rs~~QCr~   69 (121)
                      .....||.+|...+.+....+          ...|..|+.. +.    .||..||..
T Consensus         6 ~~~~~WT~eE~~~Fe~~l~~y----------GKdf~~I~~~~v~----~Kt~~~~v~   48 (70)
T 2crg_A            6 SGMEEWSASEACLFEEALEKY----------GKDFNDIRQDFLP----WKSLTSIIE   48 (70)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHT----------CSCHHHHHHTTCS----SSCHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHh----------CccHHHHHHHHcC----CCCHHHHHH
Confidence            345679999999998876544          2258999974 54    699999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	121
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	6e-04

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 33.7 bits (77), Expect = 6e-04
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 12/67 (17%)

Query: 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVP-RTANQCRRKWDSL 74
          G  WS+KE                +AL+ Y K         A  V  RT  + ++ ++ L
Sbjct: 1  GRPWSAKENKAF-----------ERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEIL 49

Query: 75 IDEYKKI 81
          +++ K I
Sbjct: 50 VEDIKYI 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	121
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.03
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	98.96
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.94
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.92
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	98.91
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	98.87
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	98.82
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.78
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.63
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.47
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	98.46
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	98.39
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.05
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	97.94
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.53
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	93.97
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	84.37

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.03  E-value=5.9e-10  Score=68.30  Aligned_cols=60  Identities=20%  Similarity=0.444  Sum_probs=48.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhhCC
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIVRS   85 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd~~   85 (121)
                      +..||.+|...|+++...+      +......|..||..|.    .||+.||+.+|..|..+.+.|..|.
T Consensus         1 G~~WT~eEd~~L~~~v~~~------~~~~~~~W~~Ia~~l~----gRt~~qc~~r~~~L~~dik~iesg~   60 (63)
T d2cjja1           1 GRPWSAKENKAFERALAVY------DKDTPDRWANVARAVE----GRTPEEVKKHYEILVEDIKYIESGK   60 (63)
T ss_dssp             CCSCCHHHHHHHHHHHHHS------CTTCTTHHHHHHHHST----TCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CcCCCHHHHHHHHHHHHHH------CCCCchHHHHHHHHcC----CCCHHHHHHHHHHHHHHhhccccCC
Confidence            4579999999999986433      1123458999999997    6999999999999999988887654

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=6.8e-10  Score=64.56  Aligned_cols=45  Identities=16%  Similarity=0.589  Sum_probs=38.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 043001           17 PDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSL   74 (121)
Q Consensus        17 ~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL   74 (121)
                      |.||.+|...|+++...+         +...|..||+.|.    .||+.||+.+|.+.
T Consensus         2 ~~Wt~eEd~~L~~~v~~~---------G~~nW~~Ia~~~~----~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           2 PSWTAQEEMALLEAVMDC---------GFGNWQDVANQMC----TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSSCHHHHHHHHHHHHHT---------CTTCHHHHHHHHT----TSCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHH---------CCccHHHHHHHcC----CCCHHHHHHHHHHh
Confidence            679999999999987544         4557999999997    79999999999864

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=8e-10  Score=64.87  Aligned_cols=46  Identities=24%  Similarity=0.596  Sum_probs=39.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001           17 PDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI   75 (121)
Q Consensus        17 ~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~   75 (121)
                      .+||.+|...|+++...+         +...|..||..|.    .||+.||+.+|.|.+
T Consensus         2 ~~WT~eED~~L~~~v~~~---------g~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L   47 (50)
T d1guua_           2 TRWTREEDEKLKKLVEQN---------GTDDWKVIANYLP----NRTDVQCQHRWQKVL   47 (50)
T ss_dssp             CCCCHHHHHHHHHHHHHH---------CSSCHHHHHHTST----TCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH---------CCCCHHHHHHHHC----CCCHHHHHHHHHhhC
Confidence            469999999999987654         3457999999986    699999999999875

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=5.9e-10  Score=66.09  Aligned_cols=47  Identities=21%  Similarity=0.550  Sum_probs=39.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI   75 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~   75 (121)
                      .+.||.+|...|+++...+         +...|..||+.|.    .||+.||+.+|.+.+
T Consensus         3 rg~WT~eED~~L~~~v~~~---------g~~~W~~Ia~~l~----~Rt~~qc~~Rw~~~L   49 (52)
T d1gvda_           3 KGPWTKEEDQRLIKLVQKY---------GPKRWSVIAKHLK----GRIGKQCRERWHNHL   49 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHH---------CTTCHHHHHTTST----TCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHH---------CCCCHHHHHHHHC----CCCHHHHHHHHHhhC
Confidence            3559999999999987655         4457999999986    799999999999754

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.6e-09  Score=64.13  Aligned_cols=49  Identities=16%  Similarity=0.259  Sum_probs=40.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 043001           17 PDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLID   76 (121)
Q Consensus        17 ~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~   76 (121)
                      ..||.+|...|+++...+         +...|..||+.+.  .-.||+.||+.+|.||.+
T Consensus         3 ~~WT~eED~~L~~~v~~~---------G~~~W~~I~~~~~--~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           3 QAWLWEEDKNLRSGVRKY---------GEGNWSKILLHYK--FNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCHHHHHHHHHHHHHH---------CTTCHHHHHHHSC--CSSCCHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHH---------CCCCHHHHHhhcC--CCCCCHHHHHHHHHHHHC
Confidence            469999999999998766         5568999997642  236999999999999874

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=3.4e-09  Score=63.28  Aligned_cols=49  Identities=20%  Similarity=0.421  Sum_probs=40.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 043001           17 PDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLID   76 (121)
Q Consensus        17 ~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~   76 (121)
                      ..||.+|...|++....+         +...|..||..+.-  -.||+.||+++|.||++
T Consensus         3 ~~WT~eEd~~L~~~V~~~---------G~~~W~~I~~~~~~--~~Rt~~q~k~Rwrn~~k   51 (55)
T d1w0ua_           3 QKWTVEESEWVKAGVQKY---------GEGNWAAISKNYPF--VNRTAVMIKDRWRTMKR   51 (55)
T ss_dssp             CCCCHHHHHHHHHHHHHH---------CTTCHHHHHHHSCC--SSCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHh---------CCChHHHHHhhcCC--CCcCHHHHHHHHHHHhc
Confidence            469999999999998665         44579999987431  16999999999999874

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.82  E-value=5.2e-09  Score=67.25  Aligned_cols=51  Identities=18%  Similarity=0.302  Sum_probs=43.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 043001           18 DWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDE   77 (121)
Q Consensus        18 ~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~   77 (121)
                      .||.+|+..|++....+         +...|..|+..|...+-.||+.||++||.||++.
T Consensus         2 ~WT~eEd~~L~~~V~~~---------G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~   52 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHL---------GTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT   52 (83)
T ss_dssp             CCCHHHHHHHHHHHHHH---------CSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH---------CcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhh
Confidence            69999999999987654         4457999999987767789999999999999854

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=5.9e-09  Score=63.02  Aligned_cols=48  Identities=15%  Similarity=0.401  Sum_probs=38.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 043001           17 PDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSL   74 (121)
Q Consensus        17 ~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL   74 (121)
                      ..||.+|...|+++...+      +......|..||+.|-    .||+.||+.+|..|
T Consensus        13 ~~WT~eEd~~L~~~v~~~------~~~~~~~W~~IA~~l~----~Rt~~qc~~R~~~L   60 (60)
T d2cqra1          13 EPWTQNQQKLLELALQQY------PRGSSDCWDKIARCVP----SKSKEDCIARYKLL   60 (60)
T ss_dssp             CCCCHHHHHHHHHHHHHS------CSSSHHHHHHHGGGCS----SSCHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHc------CCccchHHHHHHHHcC----CCCHHHHHHHHHHC
Confidence            459999999999987543      1122457999999886    79999999999865

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=1.6e-08  Score=58.59  Aligned_cols=45  Identities=22%  Similarity=0.491  Sum_probs=39.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001           17 PDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI   75 (121)
Q Consensus        17 ~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~   75 (121)
                      ..||.+|...|++.+..+          +..|..||..|-    .||+.||+.+|.+++
T Consensus         2 ~~WT~eED~~L~~~v~~~----------G~~W~~Ia~~~~----gRt~~~~knr~~~~l   46 (47)
T d1gv2a2           2 TSWTEEEDRIIYQAHKRL----------GNRWAEIAKLLP----GRTDNAIKNHWNSTM   46 (47)
T ss_dssp             CCCCHHHHHHHHHHHHHH----------SSCHHHHHTTCT----TCCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHH----------hhHHHHHHhHcC----CCCHHHHHHHHHHHc
Confidence            469999999999998765          358999999876    799999999999875

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.47  E-value=4.7e-07  Score=59.57  Aligned_cols=63  Identities=8%  Similarity=0.142  Sum_probs=50.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhhCCC
Q 043001           13 SQVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIVRSR   86 (121)
Q Consensus        13 ~~~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd~~~   86 (121)
                      ......||.+|..+||+...++       ....+.|..||..|.    +|++.||+.+|..|++-|.+--+.++
T Consensus        30 G~~~~~WTrEEDriIL~~~q~~-------G~~~~tw~~Ia~~L~----~Rs~~qvr~Rf~~Lm~lf~~~~e~~~   92 (95)
T d1ug2a_          30 GEKVVLWTREADRVILTMCQEQ-------GAQPHTFSVISQQLG----NKTPVEVSHRFRELMQLFHTACESGP   92 (95)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHT-------TSCTTTHHHHHHHHS----SCCHHHHHHHHHHHHHHHHHCSSSCC
T ss_pred             CCccCCcCHHHHHHHHHHHHHc-------CCcHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHhhccCC
Confidence            3455679999999999875433       234567999999998    89999999999999999998766443

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2.1e-07  Score=56.52  Aligned_cols=46  Identities=20%  Similarity=0.327  Sum_probs=39.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 043001           17 PDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLID   76 (121)
Q Consensus        17 ~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~   76 (121)
                      .+||.+|...|+++...+          +..|..||..|.    .||+.||+..|.+++.
T Consensus         3 ~~WT~eEd~~l~~~~~~~----------G~~W~~Ia~~~~----~Rt~~q~k~ry~~~~~   48 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKF----------GRRWTKISKLIG----SRTVLQVKSYARQYFK   48 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHT----------CSCHHHHHHHHS----SSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHh----------cchHHHHHHHcC----CCCHHHHHHHHHHHHH
Confidence            569999999999987544          358999999986    7999999999987664

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.39  E-value=9e-08  Score=61.91  Aligned_cols=51  Identities=12%  Similarity=0.177  Sum_probs=39.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001           17 PDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI   75 (121)
Q Consensus        17 ~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~   75 (121)
                      ..||.+|...|+++...+    .........|..||..|-    .||+.||+.+|.+.+
T Consensus         2 ~~WT~eED~~L~~~v~~~----g~~~~~~~~W~~IA~~lp----gRt~~qcr~Rw~~~L   52 (86)
T d1igna1           2 ASFTDEEDEFILDVVRKN----PTRRTTHTLYDEISHYVP----NHTGNSIRHRFRVYL   52 (86)
T ss_dssp             CCCCHHHHHHHHHHHHTS----GGGTTCSHHHHHHTTTST----TSCHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHh----CcCcCCccCHHHHHHHcC----CCCHHHHHHHHHHHc
Confidence            469999999999886433    111123456999999986    699999999999866

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=2.4e-06  Score=51.77  Aligned_cols=48  Identities=15%  Similarity=0.272  Sum_probs=40.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDE   77 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~   77 (121)
                      ...||.+|...|+++...+          +..|..||+.|.    .||+.||+..|.++.+.
T Consensus         5 ~~~WT~eE~~~f~~~~~~~----------G~~w~~Ia~~~~----~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKY----------GRDFQAISDVIG----NKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHH----------SSCHHHHHHHHS----SCCHHHHHHHHHHTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHh----------CchHHHHHHHcC----CCCHHHHHHHHHHHHhh
Confidence            4679999999999987655          246999999997    79999999999876543

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=2.5e-06  Score=52.14  Aligned_cols=59  Identities=15%  Similarity=0.184  Sum_probs=43.9

Q ss_pred             CCCCCCCcccC--CCCCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 043001            2 EGGSSRTRHTR--SQVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSL   74 (121)
Q Consensus         2 ~~g~~~~~~~r--~~~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL   74 (121)
                      +|.+..+....  ......||.+|...|+++...+          +..|..||+.|.    .||..||+..|...
T Consensus         1 ng~v~dp~~~~~~~~~~~~WT~eE~~~f~~~~~~~----------G~~w~~Ia~~~~----~rt~~q~~~~yy~~   61 (68)
T d1xc5a1           1 NGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQH----------PKNFGLIASFLE----RKTVAECVLYYYLT   61 (68)
T ss_dssp             CCSSCCCCTTTTSTTTTTCCCTTTHHHHHHHHHHT----------TSCSSSHHHHTT----TSCHHHHHHHHHHH
T ss_pred             CCcccchHHHHccccCCCCCCHHHHHHHHHHHHHH----------CCcHHHHHHHcC----CCCHHHHHHHHHHH
Confidence            46665554432  2334569999999999987655          247999999886    79999999998654

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.00015  Score=43.28  Aligned_cols=49  Identities=16%  Similarity=0.367  Sum_probs=36.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI   75 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~   75 (121)
                      ++.||.+|...|.++....    ..  ....+|+.||+.+.     ||.++|..+.+.|.
T Consensus         1 a~eWT~ee~~~le~Al~~~----P~--gt~~RW~~IA~~vg-----kt~~ev~~~~k~l~   49 (59)
T d2cqqa1           1 APEWTEEDLSQLTRSMVKF----PG--GTPGRWEKIAHELG-----RSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHS----CT--TCTTHHHHHHHHHT-----SCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHC----CC--CCcHHHHHHHHHHC-----CCHHHHHHHHHHHH
Confidence            3679999999999875422    11  23579999999983     99999977554443

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.97  E-value=0.036  Score=31.95  Aligned_cols=41  Identities=12%  Similarity=0.236  Sum_probs=32.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHH
Q 043001           18 DWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKW   71 (121)
Q Consensus        18 ~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW   71 (121)
                      .||.+|...+++....+          +..|..|+..|.   =.||..||..=.
T Consensus         3 ~WT~eE~~~F~~~~~~y----------GKdf~~I~~~~v---~~Ks~~~~v~fY   43 (57)
T d2crga1           3 EWSASEACLFEEALEKY----------GKDFNDIRQDFL---PWKSLTSIIEYY   43 (57)
T ss_dssp             CCCHHHHHHHHHHHHHT----------CSCHHHHHHTTC---SSSCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH----------cccHHHHHHHHc---CCCCHHHHHHHH
Confidence            69999999999987654          347888988653   379999997743

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.37  E-value=1.1  Score=26.78  Aligned_cols=47  Identities=21%  Similarity=0.455  Sum_probs=35.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHH
Q 043001           16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWD   72 (121)
Q Consensus        16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~   72 (121)
                      ...|+.+|.+.|-.+...+      .+....-|-.||....    .||+..|..|..
T Consensus         8 d~~W~e~ELqkLh~A~~Sl------Pkh~~gfW~~VA~~VG----tRSaeECQ~ky~   54 (73)
T d1wgxa_           8 DKEWNEKELQKLHCAFASL------PKHKPGFWSEVAAAVG----SRSPEECQRKYM   54 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHS------CSSSSSHHHHHHHHTT----TSCHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHhc------CCCCCccHHHHHHHHc----cCCHHHHHHHHH
Confidence            4579999998887664322      3345668999998877    799999988653