Citrus Sinensis ID: 043016

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-
MKEANRKKKKKRSRAAKPAPNNSSRDSNKPTATDGEEVQNDTKNQIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTALTEGNSEDPLTSSSVSGGSSSLDSGSSSGSWLGFGETSCVQNPVDYGNKKGGSRQKRVVAVSGMVANMLGKDYVRASPRKSGRFKGVGDDQSGFDKEEMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSAPSNERSMNDDDDFTFKEDRRFITEHTDNFTDRASDCTSYSSESDLYDSIWSTGYNYRNNSKVLIGSEVPSPLKASDQSDLPQKVLESLFNISKSPQHEPTTMNWRNVVKKLQALGPRFDVSHSSSTEHQQELCAKGDEYQVFRKDAKQHWNSMKSCYQKASAAYSKGEWGYAAHLSEQGKSLTKLAQKADEKASHDIFKARNKSFENVITIDLHGQHVKPAMKLLKLHLVMVSYAQSVQTLRVITGCGSHGVGKSKLKQSVIELVENEGLHWSEENRGTVLIKLDGFR
ccHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccHHHHHHHHHHHccccEEEcccEEEEEEEcccc
cHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccEHHHcccccccccccccccHHHcccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccHHHHccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccccccccHHHHHHHHHccccEccccccEEEEEccccc
mkeanrkkkkkrsraakpapnnssrdsnkptatdgeevqndTKNQIIHSLTEafgsvsleeATSAFCEANGDVNKAEELLTALtegnsedpltsssvsggsssldsgsssgswlgfgetscvqnpvdygnkkggsrqKRVVAVSGMVANMLGKdyvrasprksgrfkgvgddqsgfdKEEMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDlsapsnersmnddddftfkeDRRFITEhtdnftdrasdctsyssesdlydsiwstgynyrnnskvligsevpsplkasdqsdlpQKVLESLFNiskspqhepttmnWRNVVKKLQAlgprfdvshssstEHQQELCAKGDEYQVFRKDAKQHWNSMKSCYQKASAAYSKGEWGYAAHLSEQGKSLTKLAQKADEKASHDIFKARNKSFENVITIDLHGQHVKPAMKLLKLHLVMVSYAQSVQTLRVITgcgshgvgksKLKQSVIELVEneglhwseenrgtvlikldgfr
mkeanrkkkkkrsraakpapnnssrdsnkptatdgeevqndTKNQIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTALTegnsedpltsssvsggssSLDSGSSSGSWLGFGETSCVQNPVdygnkkggsrqKRVVAVSGMVANMLGKdyvrasprksgrfkgvgddqsgfDKEEMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLsapsnersmnddddftFKEDRRFITehtdnftdrasdctsyssesDLYDSIWSTGYNYRNNSKVLIGSEVPSPLKASDQSDLPQKVLESLFNiskspqhepttmnWRNVVKKLQALGPRFDVSHSSSTEHQQELCAKGDEYQVFRKDAKQHWNSMKSCYQKASAAYSKGEWGYAAHLSEQGKSLTKLAQKADEKASHDIFKARNKSFENVITIDLHGQHVKPAMKLLKLHLVMVSYAQSVQTLRVITGCGSHGVGKSKLKQSVIELVeneglhwseenrgtvlikldgfr
MkeanrkkkkkrsraakPAPNNSSRDSNKPTATDGEEVQNDTKNQIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTALTEGNSEDPLTsssvsggsssldsgsssgsWLGFGETSCVQNPVDYGNKKGGSRQKRVVAVSGMVANMLGKDYVRASPRKSGRFKGVGDDQSGFDKEEMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSAPSNERSMNDDDDFTFKEDRRFITEHTDNFTDRASDCTSYSSESDLYDSIWSTGYNYRNNSKVLIGSEVPSPLKASDQSDLPQKVLESLFNISKSPQHEPTTMNWRNVVKKLQALGPRFDVSHSSSTEHQQELCAKGDEYQVFRKDAKQHWNSMKSCYQKASAAYSKGEWGYAAHLSEQGKSLTKLAQKADEKASHDIFKARNKSFENVITIDLHGQHVKPAMKLLKLHLVMVSYAQSVQTLRVITGCGSHGVGKSKLKQSVIELVENEGLHWSEENRGTVLIKLDGFR
**********************************************IHSLTEAFGSVSL*****AFCE********************************************WLGFGETSCVQNPV*************VVAVSGMVANMLGKDY***************************QFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDL**********************FI********************SDLYDSIWSTGYNYRNNSKVLI***************************************WRNVVKKLQA***********************DEYQVFRKDAKQHWNSMKSCYQKASAAYSKGEWGYAAHL*********************IFKARNKSFENVITIDLHGQHVKPAMKLLKLHLVMVSYAQSVQTLRVITGCGSHGVGKSKLKQSVIELVENEGLHWSEENRGTVLIKL****
************************************************SLTEAFGSVSLEEATSAFCEANGDVNKAEELL************************************************************************************************DKEEMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMD*************************************************************************************************************************************************YQVFRKDAKQHWNSMKSC****************AHLSEQGKSLTKLAQKADEKASHDIFKARNKSFENVITIDLHGQHVKPAMKLLKLHLVMVSYAQSVQTLRVITGCGS******KL**SVIELVENEGLHWSEENRGTVLIKLDGF*
**************************************QNDTKNQIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTALTEG**************************WLGFGETSCVQNPVDYGNKKGGSRQKRVVAVSGMVANMLGKDYVRASPRKSGRFKGVGDDQSGFDKEEMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSAPSNERSMNDDDDFTFKEDRRFITEHTDNFTDRASDCTSYSSESDLYDSIWSTGYNYRNNSKVLIGSEVP*********DLPQKVLESLFNISKSPQHEPTTMNWRNVVKKLQALGPRF************ELCAKGDEYQVFRKDAKQHWNSMKSCYQKASAAYSKGEWGYAAHLSEQGKSL***********SHDIFKARNKSFENVITIDLHGQHVKPAMKLLKLHLVMVSYAQSVQTLRVITGCGSHGVGKSKLKQSVIELVENEGLHWSEENRGTVLIKLDGFR
****************************************DTKNQIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTALT****************************************************QKRVVAVSGMVANMLGKDYVRASPRKSGRFKGVGDDQSGFDKEEMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLS*****************************************************************************************FNIS*******************************************GDEYQVFRKDAKQHWNSMKSCYQKASAAYSKGEWGYAAHLSEQGKSLTKLAQKADEKASHDIFKARNKSFENVITIDLHGQHVKPAMKLLKLHLVMVSYAQSVQTLRVITGCGSHGVGKSKLKQSVIELVENEGLHWSEENRGTVLIKLDG**
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MKEANRKKKKKRSRAAKPAPNNSSRDSNKPTATDGEEVQNDTKNQIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTALTEGNSEDPLTSSSVSGGSSSLDSGSSSGSWLGFGETSCVQNPVDYGNKKGGSRQKRVVAVSGMVANMLGKDYVRASPRKSGRFKGVGDDQSGFDKEEMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSAPSNERSMNDDDDFTFKEDRRFITEHTDNFTDRASDCTSYSSESDLYDSIWSTGYNYRNNSKVLIGSEVPSPLKASDQSDLPQKVLESLFNISKSPQHEPTTMNWRNVVKKLQALGPRFDVSHSSSTEHQQELCAKGDEYQVFRKDAKQHWNSMKSCYQKASAAYSKGEWGYAAHLSEQGKSLTKLAQKADEKASHDIFKARNKSFENVITIDLHGQHVKPAMKLLKLHLVMVSYAQSVQTLRVITGCGSHGVGKSKLKQSVIELVENEGLHWSEENRGTVLIKLDGFR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query511 2.2.26 [Sep-21-2011]
Q86UW61770 NEDD4-binding protein 2 O yes no 0.279 0.080 0.288 2e-08
Q08954240 Smr domain-containing pro yes no 0.293 0.625 0.290 1e-07
Q9UTP4206 Smr domain-containing pro yes no 0.285 0.708 0.26 1e-05
>sp|Q86UW6|N4BP2_HUMAN NEDD4-binding protein 2 OS=Homo sapiens GN=N4BP2 PE=1 SV=2 Back     alignment and function desciption
 Score = 61.2 bits (147), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 13/156 (8%)

Query: 361  EYQVFRKDAKQHWNSMKSCYQKASAAYSKGEWGYAAHLSEQGKSLTKLAQKADEKASHDI 420
            +Y  +R +A  H      CY KA  AY  G+   A   ++QG    +  ++A+  A+ +I
Sbjct: 1618 DYDDYRAEAFLHQQKRMECYSKAKEAYRIGKKNVATFYAQQGTLHEQKMKEANHLAAIEI 1677

Query: 421  FKARNKSFENVITIDLHGQHVKPAMKLLKLHLVMVSYAQSVQ--------TLRVITGCGS 472
            F+  N S      +DLHG HV  A++    HL+ V   ++ +         L VITG G+
Sbjct: 1678 FEKVNASLLPQNVLDLHGLHVDEALE----HLMRVLEKKTEEFKQNGGKPYLSVITGRGN 1733

Query: 473  HGV-GKSKLKQSVIELVENEGLHWSEENRGTVLIKL 507
            H   G +++K +VI+ + +    +SE   G + + L
Sbjct: 1734 HSQGGVARIKPAVIKYLISHSFRFSEIKPGCLKVML 1769
Has 5'-polynucleotide kinase and nicking endonuclease activity. May play a role in DNA repair or recombination.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: -EC: .EC: -EC: .EC: -
>sp|Q08954|YP199_YEAST Smr domain-containing protein YPL199C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPL199C PE=1 SV=1 Back     alignment and function description
>sp|Q9UTP4|YLL3_SCHPO Smr domain-containing protein C11H11.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11H11.03c PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query511
255569351496 ATP binding protein, putative [Ricinus c 0.904 0.931 0.540 1e-131
297745899489 unnamed protein product [Vitis vinifera] 0.919 0.961 0.526 1e-123
449450814509 PREDICTED: uncharacterized protein LOC10 0.737 0.740 0.584 1e-120
356566104509 PREDICTED: uncharacterized protein LOC10 0.876 0.880 0.524 1e-119
147865388 896 hypothetical protein VITISV_018620 [Viti 0.919 0.524 0.500 1e-116
356539614512 PREDICTED: uncharacterized protein LOC10 0.874 0.873 0.508 1e-114
359478548450 PREDICTED: uncharacterized protein LOC10 0.847 0.962 0.500 1e-113
15237740519 smr (Small MutS Related) domain-containi 0.933 0.919 0.480 1e-109
21553543519 putative PRL1 associated protein [Arabid 0.933 0.919 0.478 1e-108
186532573506 smr (Small MutS Related) domain-containi 0.884 0.893 0.472 2e-98
>gi|255569351|ref|XP_002525643.1| ATP binding protein, putative [Ricinus communis] gi|223535079|gb|EEF36761.1| ATP binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 264/488 (54%), Positives = 343/488 (70%), Gaps = 26/488 (5%)

Query: 27  SNKPTATDGEEVQNDTKNQIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTALTEG 86
           +N  TA  G++ Q   +++ + +L EAF S+S  EA++A  EANGD+  A ++L+     
Sbjct: 20  TNNNTALHGQQQQ---QSETVLALMEAFDSISFREASTACDEANGDIKIAADILST---- 72

Query: 87  NSEDPLTSSSVSGGSSSLDSGSSSGSWLGFGETSCVQNPVDYGNKKGGSRQKRVVAVSGM 146
           N++DP TSS  SG S S  S   S        +S   N V+   +KG ++QKRVVAV+G 
Sbjct: 73  NADDPSTSSVSSGSSGSTSSSIRS--------SSEESNLVN--KRKGLNKQKRVVAVTGT 122

Query: 147 VANMLGKDYVRASPRKSGRFKGVGDDQSGFDKEEMEQFLYSMLGDECQFSMAVVRDVLCQ 206
           V+ ++GK+YVR       +  G G       KE+ E FL SML D+C  S+AVVRDVLCQ
Sbjct: 123 VSTVIGKEYVRRDSSAKAKDFGCG----VVSKEDAEHFLCSMLSDDCDLSLAVVRDVLCQ 178

Query: 207 CGYNVEKAMDVLLDLSAPSNERSMND---DDDFTFKEDRRFITEHTDNFTDRASDCTSYS 263
           CGY++EKA+DVLL LSA S E+S ND   +    +K+D  F+  H +  TD+ASDCTS S
Sbjct: 179 CGYDLEKAVDVLLALSASSFEQSRNDGYFNHMVNYKDDTAFLVGHNEIVTDQASDCTSTS 238

Query: 264 SESDLYDSIWSTGYNYRNNSKVLIGSEVPSPLKASDQSDLPQKVLESLFNISKSPQHEPT 323
           +ES++++SIW  GY+ RN S+V++ SE PS +  S+ SDLPQKVLE LFNIS+S +HEP 
Sbjct: 239 AESEVHESIW--GYDCRNYSQVIMSSESPSTIARSNVSDLPQKVLEGLFNISRSSEHEPG 296

Query: 324 TMNWRNVVKKLQALGPRFDVSHSSSTEHQQELCAKGDEYQVFRKDAKQHWNSMKSCYQKA 383
           TMNWRNV +KLQ+L P  D+   S    Q    AKG EY ++R  A QHW+S  S YQKA
Sbjct: 297 TMNWRNVARKLQSLVPAIDMCPLSDAAPQHGSFAKGAEYHLYRHSANQHWDSRTSYYQKA 356

Query: 384 SAAYSKGEWGYAAHLSEQGKSLTKLAQKADEKASHDIFKARNKSFENVITIDLHGQHVKP 443
           +AAYSKG   YA++LS+QG   TKLA++ADE+AS DIF+ARNK FENVITIDLHGQHVK 
Sbjct: 357 AAAYSKGNRQYASYLSDQGSVQTKLAREADERASKDIFEARNKDFENVITIDLHGQHVKQ 416

Query: 444 AMKLLKLHLVMVSYAQSVQTLRVITGCGSHGVGKSKLKQSVIELVENEGLHWSEENRGTV 503
           AM+LLKLHL+  +Y +SVQTLRVITGCG+HG+GKSKLKQS+I L+E EG+ WSEENRGT+
Sbjct: 417 AMRLLKLHLLFGTYVRSVQTLRVITGCGNHGLGKSKLKQSIIILLEKEGIRWSEENRGTL 476

Query: 504 LIKLDGFR 511
           LIKLDGF+
Sbjct: 477 LIKLDGFK 484

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297745899|emb|CBI15955.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449450814|ref|XP_004143157.1| PREDICTED: uncharacterized protein LOC101212799 [Cucumis sativus] gi|449525423|ref|XP_004169717.1| PREDICTED: uncharacterized protein LOC101225872 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356566104|ref|XP_003551275.1| PREDICTED: uncharacterized protein LOC100795279 [Glycine max] Back     alignment and taxonomy information
>gi|147865388|emb|CAN79814.1| hypothetical protein VITISV_018620 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356539614|ref|XP_003538291.1| PREDICTED: uncharacterized protein LOC100791618 [Glycine max] Back     alignment and taxonomy information
>gi|359478548|ref|XP_002279113.2| PREDICTED: uncharacterized protein LOC100248399 [Vitis vinifera] Back     alignment and taxonomy information
>gi|15237740|ref|NP_200680.1| smr (Small MutS Related) domain-containing protein [Arabidopsis thaliana] gi|3201477|emb|CAA06808.1| putative PRL1 associated protein [Arabidopsis thaliana] gi|8843792|dbj|BAA97340.1| PRL1 associated protein-like [Arabidopsis thaliana] gi|17065352|gb|AAL32830.1| PRL1 associated protein-like [Arabidopsis thaliana] gi|21387179|gb|AAM47993.1| PRL1-associated protein-like protein [Arabidopsis thaliana] gi|332009706|gb|AED97089.1| smr (Small MutS Related) domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21553543|gb|AAM62636.1| putative PRL1 associated protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|186532573|ref|NP_001119460.1| smr (Small MutS Related) domain-containing protein [Arabidopsis thaliana] gi|332009708|gb|AED97091.1| smr (Small MutS Related) domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query511
TAIR|locus:2178878519 AT5G58720 "AT5G58720" [Arabido 0.921 0.907 0.468 3.1e-106
TAIR|locus:2090181490 SDE5 "AT3G15390" [Arabidopsis 0.600 0.626 0.273 3.7e-25
DICTYBASE|DDB_G0288821316 DDB_G0288821 "K homology (KH), 0.309 0.5 0.319 1.6e-12
CGD|CAL0006270256 orf19.2246 [Candida albicans ( 0.293 0.585 0.318 2.7e-11
UNIPROTKB|Q59Z54256 CaO19.2246 "Putative uncharact 0.293 0.585 0.318 2.7e-11
UNIPROTKB|E2R8V61773 N4BP2 "Uncharacterized protein 0.287 0.082 0.302 8.4e-11
DICTYBASE|DDB_G02682321025 DDB_G0268232 "ubiquitin system 0.307 0.153 0.283 9.7e-11
UNIPROTKB|Q86UW61770 N4BP2 "NEDD4-binding protein 2 0.287 0.083 0.296 7.7e-10
SGD|S000006120240 YPL199C "Putative protein of u 0.289 0.616 0.300 1e-09
UNIPROTKB|E1BIJ51768 N4BP2 "Uncharacterized protein 0.287 0.083 0.302 1.4e-09
TAIR|locus:2178878 AT5G58720 "AT5G58720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1051 (375.0 bits), Expect = 3.1e-106, P = 3.1e-106
 Identities = 237/506 (46%), Positives = 322/506 (63%)

Query:    18 PAPNNSSRDSNKPTAT----DGE---EVQNDTKNQIIHSLTEAFGSVSLEEATSAFCEAN 70
             P+ + ++ D NK        DGE   E++N  KN  I SL EAF SVS+EEA +A+ EA 
Sbjct:    19 PSGDGTTSDGNKKDVEEERKDGEGKREIENVGKN-FIESLMEAFCSVSMEEAMAAYKEAG 77

Query:    71 GDVNKAEELLTALTEGNSEDPLTXXXXXXXXXXXXXXXXXXXWLGFGETSCVQNPVDYGN 130
             GD+NKA E+L+ L E + +DP T                     G G +S     +    
Sbjct:    78 GDLNKAAEILSDLVE-SGDDPSTSSVASGSSGQETASTSEY---GAGSSSSCSEDLTRDR 133

Query:   131 KKGGSRQKRVVAVSGMVANMLGKDYVRASP-RKS----GRFKGV-GDDQSGFDKEEMEQF 184
                GS+Q RV+A +GMV++++ KDY++ +P RK      R K + G+ +   D+E+ EQF
Sbjct:   134 WFKGSKQSRVIAATGMVSSVIAKDYLKPNPVRKEFPMMERSKELCGNGKKAADREKAEQF 193

Query:   185 LYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSAPSNERSMNDDDDFTFKEDRRF 244
             L SMLGD+C+ SMAVVRDVLCQCGY+V+ A++VLLD+S+ S + S++          + F
Sbjct:   194 LSSMLGDDCELSMAVVRDVLCQCGYDVDMALNVLLDMSSSSTDDSLSG---------KCF 244

Query:   245 ITEHTDNFTDRASDCTSYSSESDLYDSIWSTGYNYRNNSKVLIGSEVP-SPLKASDQSDL 303
                 +D+  + + D  +  S+ +L+   W   Y+ R+ +K L+ S+ P +  +  D+  L
Sbjct:   245 GIGVSDSLAESSFDTDT--SDCELF---WGGDYSQRDYAKALMSSQDPFATTQGIDELGL 299

Query:   304 PQKVLESLFNISKSPQHEPTTMNWRNVVKKLQALGPRFDVSHSSSTEHQQELCAKGDEYQ 363
             PQKVLESLFNI ++P+HE  T +WRNV KK+Q+LG   D S SS  E       K D Y 
Sbjct:   300 PQKVLESLFNIRQNPKHESKTTSWRNVAKKMQSLG--IDASSSSGEEPHPNTFVKDDSYH 357

Query:   364 VFRKDAKQHWNSMKSCYQKASAAYSKGEWGYAAHLSEQGKSLTKLAQKADEKASHDIFKA 423
               RK A   WN  KS YQKA+ AYSKG   +AA+LS++G+  +K AQ+ADE+AS DIF A
Sbjct:   358 ELRKGANDQWNVTKSYYQKAAEAYSKGGRAHAAYLSDKGRVASKQAQRADERASQDIFVA 417

Query:   424 RNKSFENVITIDLHGQHVKPAMKLLKLHLVMVSYAQSVQTLRVITGCGSHGVGKSKLKQS 483
             RNK  ENV+TIDLHGQHVKPAMKLLKLHL+  SY  S+QTLRVITGCG+ G GKSK+KQS
Sbjct:   418 RNKGIENVVTIDLHGQHVKPAMKLLKLHLLFGSYVPSIQTLRVITGCGASGFGKSKVKQS 477

Query:   484 VIELVENEGLHWSEENRGTVLIKLDG 509
             V++L+E EG+ + EENRGT+LIKLDG
Sbjct:   478 VVKLLEREGVRYCEENRGTLLIKLDG 503
GO:0003684 "damaged DNA binding" evidence=ISS
GO:0005524 "ATP binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0005737 "cytoplasm" evidence=ISM
GO:0006298 "mismatch repair" evidence=ISS
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
TAIR|locus:2090181 SDE5 "AT3G15390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288821 DDB_G0288821 "K homology (KH), type 1 domain containing-protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
CGD|CAL0006270 orf19.2246 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59Z54 CaO19.2246 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
UNIPROTKB|E2R8V6 N4BP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0268232 DDB_G0268232 "ubiquitin system component Cue domain containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q86UW6 N4BP2 "NEDD4-binding protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
SGD|S000006120 YPL199C "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|E1BIJ5 N4BP2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00024102001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (474 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query511
pfam0859066 pfam08590, DUF1771, Domain of unknown function (DU 5e-16
smart0046380 smart00463, SMR, Small MutS-related domain 5e-12
pfam0171380 pfam01713, Smr, Smr domain 1e-06
>gnl|CDD|117164 pfam08590, DUF1771, Domain of unknown function (DUF1771) Back     alignment and domain information 
 Score = 71.9 bits (177), Expect = 5e-16
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 361 EYQVFRKDAKQHWNSMKSCYQKASAAYSKGEWGYAAHLSEQGKSLTKLAQKADEKASHDI 420
           EYQ  R +A +H       +QKA+ AY +G+   A  LSE+GK   + A++A+ +A+  I
Sbjct: 1   EYQRLRAEADKHGQKRNELFQKAAEAYKRGDKAAAKELSEEGKKHGEKAEEANRQAAEAI 60

Query: 421 FKARNK 426
           F+  N 
Sbjct: 61  FRENNA 66

This domain is always found adjacent to pfam01713. Length = 66
>gnl|CDD|214676 smart00463, SMR, Small MutS-related domain Back     alignment and domain information
>gnl|CDD|216658 pfam01713, Smr, Smr domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 511
smart0046380 SMR Small MutS-related domain. 99.63
PF0171383 Smr: Smr domain; InterPro: IPR002625 This family i 99.55
PF0859066 DUF1771: Domain of unknown function (DUF1771); Int 99.48
COG2840184 Uncharacterized protein conserved in bacteria [Fun 99.07
PRK04946181 hypothetical protein; Provisional 98.87
KOG2401448 consensus Predicted MutS-related protein involved 98.36
PRK00409782 recombination and DNA strand exchange inhibitor pr 98.19
TIGR01069771 mutS2 MutS2 family protein. Function of MutS2 is u 98.1
PF0284542 CUE: CUE domain; InterPro: IPR003892 This domain m 96.15
PF0284542 CUE: CUE domain; InterPro: IPR003892 This domain m 95.3
cd0019438 UBA Ubiquitin Associated domain. The UBA domain is 94.92
COG1193753 Mismatch repair ATPase (MutS family) [DNA replicat 94.23
smart0054643 CUE Domain that may be involved in binding ubiquit 94.14
cd0019438 UBA Ubiquitin Associated domain. The UBA domain is 92.33
PF0062737 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma 91.35
smart0054643 CUE Domain that may be involved in binding ubiquit 90.85
smart0016537 UBA Ubiquitin associated domain. Present in Rad23, 90.57
PF0062737 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma 88.94
PF0893879 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This 86.11
cd0029169 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered a 85.61
smart0016537 UBA Ubiquitin associated domain. Present in Rad23, 84.9
PF0120670 TusA: Sulfurtransferase TusA; InterPro: IPR001455 81.56
PF0697260 DUF1296: Protein of unknown function (DUF1296); In 80.75
>smart00463 SMR Small MutS-related domain Back     alignment and domain information 
Probab=99.63  E-value=1.1e-15  Score=126.41  Aligned_cols=77  Identities=34%  Similarity=0.505  Sum_probs=70.4

Q ss_pred             ceeecCCCChHHHHHHHHHHHHHHHhcCCCceEEEEEccCCCCC-CCcchHHHHHHHHHhCCCceee-CCCcEEEEEec
Q 043016          432 ITIDLHGQHVKPAMKLLKLHLVMVSYAQSVQTLRVITGCGSHGV-GKSKLKQSVIELVENEGLHWSE-ENRGTVLIKLD  508 (511)
Q Consensus       432 ~~IDLHGL~V~EAl~~Lk~~L~~~~~~~s~~~L~VITG~G~HS~-G~akLKpAV~~~Lek~gi~~~e-~n~G~IlV~L~  508 (511)
                      ++|||||+++.||+.+|..+|..+...+..+.+.||||+|+||. |+++|+++|.++|...+|.|.+ .|.|+++|.|.
T Consensus         2 ~~lDLHG~~~~eA~~~l~~~l~~~~~~~~~~~~~II~G~G~~s~~g~~~i~~~l~~~l~~~~~~~~~~~~~G~~~v~l~   80 (80)
T smart00463        2 WSLDLHGLTVEEALTALDKFLNNARLKGLEQKLVIITGKGKHSLGGKSGVKPALKEHLRVESFRFAEEGNSGVLVVKLK   80 (80)
T ss_pred             CeEEcCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEcccCCCccchhhHHHHHHhchhhcccccCCCCCCeEEEEEeC
Confidence            58999999999999999999998887653268999999999998 7999999999999999999988 79999999874

>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein Back     alignment and domain information
>PF08590 DUF1771: Domain of unknown function (DUF1771); InterPro: IPR013899 This domain is almost always found adjacent to IPR002625 from INTERPRO Back     alignment and domain information
>COG2840 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK04946 hypothetical protein; Provisional Back     alignment and domain information
>KOG2401 consensus Predicted MutS-related protein involved in mismatch repair [Replication, recombination and repair] Back     alignment and domain information
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>TIGR01069 mutS2 MutS2 family protein Back     alignment and domain information
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>cd00194 UBA Ubiquitin Associated domain Back     alignment and domain information
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] Back     alignment and domain information
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>cd00194 UBA Ubiquitin Associated domain Back     alignment and domain information
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases [] Back     alignment and domain information
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>smart00165 UBA Ubiquitin associated domain Back     alignment and domain information
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases [] Back     alignment and domain information
>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins Back     alignment and domain information
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD Back     alignment and domain information
>smart00165 UBA Ubiquitin associated domain Back     alignment and domain information
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase Back     alignment and domain information
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query511
2vkc_A135 NEDD4-binding protein 2; human BCL3 binding protei 9e-29
3fau_A82 NEDD4-binding protein 2; SMR, small-MUTS related d 2e-16
2d9i_A96 NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 5e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
3qd7_X137 Uncharacterized protein YDAL; alpha/beta/alpha fol 5e-04
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} Length = 82 Back     alignment and structure
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1 Length = 96 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli} Length = 137 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query511
2vkc_A135 NEDD4-binding protein 2; human BCL3 binding protei 99.92
3fau_A82 NEDD4-binding protein 2; SMR, small-MUTS related d 99.75
2d9i_A96 NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 99.72
3qd7_X137 Uncharacterized protein YDAL; alpha/beta/alpha fol 99.35
2zqe_A83 MUTS2 protein; alpha/beta, ATP-binding, DNA-bindin 99.12
1otr_A49 Protein CUE2; protein-protein complex, cell cycle; 97.13
1wgl_A59 TOLL-interacting protein; CUE domain, structural g 97.01
2dhy_A67 CUE domain-containing protein 1; structural genomi 96.83
1wji_A63 Tudor domain containing protein 3; UBA domain, str 95.87
1otr_A49 Protein CUE2; protein-protein complex, cell cycle; 95.12
1p3q_Q54 VPS9P, vacuolar protein sorting-associated protein 95.09
1vg5_A73 RSGI RUH-014, rhomboid family protein; UBA domain, 94.44
1wgl_A59 TOLL-interacting protein; CUE domain, structural g 94.4
1ufz_A83 Hypothetical protein BAB28515; HBS1-like domain, s 93.88
1vg5_A73 RSGI RUH-014, rhomboid family protein; UBA domain, 93.8
2g3q_A43 Protein YBL047C; endocytosis, solution structure, 91.74
1z96_A40 DNA-damage, UBA-domain protein MUD1; ubiquitin, th 91.17
1z96_A40 DNA-damage, UBA-domain protein MUD1; ubiquitin, th 90.99
2dhy_A67 CUE domain-containing protein 1; structural genomi 90.97
1ify_A49 HHR23A, UV excision repair protein RAD23 homolog A 90.72
1vej_A74 Riken cDNA 4931431F19; UBA domain, three helix bun 90.18
2g3q_A43 Protein YBL047C; endocytosis, solution structure, 90.01
1wj7_A104 Hypothetical protein (RSGI RUH-015); UBA domain, u 88.35
1vej_A74 Riken cDNA 4931431F19; UBA domain, three helix bun 87.72
1veg_A83 NEDD8 ultimate buster-1; ubiquitin associated doma 86.88
1wji_A63 Tudor domain containing protein 3; UBA domain, str 86.8
2dag_A74 Ubiquitin carboxyl-terminal hydrolase 5; isopeptid 86.03
1wgn_A63 UBAP1, ubiquitin associated protein; ubiquitin ass 85.68
1wr1_B58 Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu 84.52
1veg_A83 NEDD8 ultimate buster-1; ubiquitin associated doma 84.46
1ify_A49 HHR23A, UV excision repair protein RAD23 homolog A 84.29
1wj7_A104 Hypothetical protein (RSGI RUH-015); UBA domain, u 83.74
3lvj_C82 Sulfurtransferase TUSA; protein-protein complex, s 83.04
2cpw_A64 CBL-interacting protein STS-1 variant; ubiquitin a 82.73
2ooa_A52 E3 ubiquitin-protein ligase CBL-B; alpha-helical d 82.58
2cp8_A54 NEXT to BRCA1 gene 1 protein; UBA domain, structur 82.48
2dak_A63 Ubiquitin carboxyl-terminal hydrolase 5; isopeptid 82.25
2knz_A53 Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc 82.13
2d9s_A53 CBL E3 ubiquitin protein ligase; UBA domain, dimer 81.63
1wr1_B58 Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu 81.03
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1 Back     alignment and structure
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1 Back     alignment and structure
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli} Back     alignment and structure
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus} Back     alignment and structure
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4 Back     alignment and structure
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4 Back     alignment and structure
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4 Back     alignment and structure
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A Back     alignment and structure
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4 Back     alignment and structure
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1 Back     alignment and structure
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Back     alignment and structure
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1 Back     alignment and structure
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1 Back     alignment and structure
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Back     alignment and structure
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Back     alignment and structure
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A Back     alignment and structure
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A Back     alignment and structure
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus} Back     alignment and structure
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 511
d2d9ia183 d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human ( 3e-13
d1wgla_59 a.5.2.4 (A:) Toll-interacting protein {Human (Homo 4e-04
d1mn3a_54 a.5.2.4 (A:) Vacuolar protein sorting-associated p 0.001
>d2d9ia1 d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SMR domain-like
family: Smr domain
domain: Nedd4-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (153), Expect = 3e-13
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 433 TIDLHGQHVKPAMKLLKLHL----VMVSYAQSVQTLRVITGCGSHGV-GKSKLKQSVIEL 487
            +DLHG HV  A++ L   L               L VITG G+H   G +++K +VI+ 
Sbjct: 3   VLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKY 62

Query: 488 VENEGLHWSEENRGTVLIKL 507
           + +    +SE   G + + L
Sbjct: 63  LISHSFRFSEIKPGCLKVML 82
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]} Length = 59 Back     information, alignment and structure
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 54 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query511
d2d9ia183 Nedd4-binding protein 2 {Human (Homo sapiens) [Tax 99.79
d1wgla_59 Toll-interacting protein {Human (Homo sapiens) [Ta 97.58
d1mn3a_54 Vacuolar protein sorting-associated protein vps9 { 97.25
d1vg5a_73 Rhomboid family protein At3g58460 {Thale cress (Ar 93.08
d1wgna_63 Ubiquitin-associated protein 1, UBAP1 {Human (Homo 90.54
d1vg5a_73 Rhomboid family protein At3g58460 {Thale cress (Ar 89.06
d1oqya141 DNA repair protein Hhr23a {Human (Homo sapiens) [T 87.4
d1wiva_73 Ubiquitin isopeptidase T {Thale cress (Arabidopsis 86.19
d1ufza_83 HBS1-like protein {Mouse (Mus musculus) [TaxId: 10 85.05
d1wiva_73 Ubiquitin isopeptidase T {Thale cress (Arabidopsis 82.18
d1wjia_63 Tudor domain containing protein 3, TDRD3 {Human (H 81.98
d1oqya141 DNA repair protein Hhr23a {Human (Homo sapiens) [T 81.48
>d2d9ia1 d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SMR domain-like
family: Smr domain
domain: Nedd4-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.8e-20  Score=150.45  Aligned_cols=77  Identities=31%  Similarity=0.442  Sum_probs=69.3

Q ss_pred             ceeecCCCChHHHHHHHHHHHHHHHh----cCCCceEEEEEccCCCCC-CCcchHHHHHHHHHhCCCceeeCCCcEEEEE
Q 043016          432 ITIDLHGQHVKPAMKLLKLHLVMVSY----AQSVQTLRVITGCGSHGV-GKSKLKQSVIELVENEGLHWSEENRGTVLIK  506 (511)
Q Consensus       432 ~~IDLHGL~V~EAl~~Lk~~L~~~~~----~~s~~~L~VITG~G~HS~-G~akLKpAV~~~Lek~gi~~~e~n~G~IlV~  506 (511)
                      ++|||||+++.||+.+|+.+|..+..    .....+|+||||+|+||. |.++||++|.+||.+++|.|.+.|+|+|+|.
T Consensus         2 ~~iDLHG~~~~eA~~~l~~~l~~~~~~~~~~~~~~~l~IItG~G~hS~~g~~~lk~~V~~~L~~~~~~~~e~~~G~~~V~   81 (83)
T d2d9ia1           2 NVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEIKPGCLKVM   81 (83)
T ss_dssp             CEEECTTSCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECCCSGGGTTCTTCHHHHHHHHHHHTTCCEECCSTTCEEEE
T ss_pred             CeEECCCCCHHHHHHHHHHHHHHHHHhhhhcCCceEEEEEECCCCCCCCCcchHHHHHHHHHHHCCCceecCCCcEEEEE
Confidence            68999999999999999999976542    345679999999999998 5899999999999999999998899999999


Q ss_pred             ec
Q 043016          507 LD  508 (511)
Q Consensus       507 L~  508 (511)
                      |+
T Consensus        82 lk   83 (83)
T d2d9ia1          82 LK   83 (83)
T ss_dssp             CC
T ss_pred             eC
Confidence            84
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ufza_ a.5.9.1 (A:) HBS1-like protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure