Citrus Sinensis ID: 043018

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
Protein Sequence
NPTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKKDIDFIQALIVTKPVFERRFVTSYMDDSEVMMAYRDGLRVQAVVADCKNYSDEGDPELSRT
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHcccccccHHHHHHHccccHHccccccHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHHccccHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccHHHHccccccccccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHcccccccHHHHHHHHccccHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEccHHHccHHHHHHHHHccccHHHHHHHHHHcHHHHHHcHHHccHHHHHHHHHHcccHHHHHHHHHHcccHccccHHHHHHHHHHHHHHccccHHHHHHHHHHcccEEEccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHcccHHcccHHHHHHHHHHHHHHccccHHHHHHccEEEEccHHHHccHHHHHHHHHHHccccccccccHHHEcccHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
nptllladpekslrpkidyfesvgisgadlpkflcsnkQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQssriincniekrlapnvntlrahgvpeHLIAKLIMinpsslikRRDLFKTMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAfkrqpmlmlSSTKKIRELMDFFVNeiglkpldivrcpnLLLISLKKRVLPRWSVLQVLMSKNLLKKDIDFIQALIVTKPVFERRFVtsymddsevMMAYRDGLRVQAVVADcknysdegdpelsrt
Flexible Loop (DISEMBL)
nptllladpekslrpkIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIminpssliKRRDLFKTMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLIslkkrvlprWSVLQVLMSKNLLKKDIDFIQAlivtkpvferrFVTSYMDDSEVMMAYRDGLRVQAVVADCknysdegdpelsrt
Low Complexity Region (SEG)
NPTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKKDIDFIQALIVTKPVFERRFVTSYMDDSEVMMAYRDGLRVQAVVADCKNYSDEGDPELSRT
Disordered region (IsUnstruct)
***************KIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKKDIDFIQALIVTKPVFERRFVTSYMDDSEVMMAYRDGLRVQAVVADCKN************
Disordered Region (DISOPRED)
NPTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKKDIDFIQALIVTKPVFERRFVTSYMDDSEVMMAYRD*************************
Disordered Region (DISEMBL)
NPTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKKDIDFIQALIVTKPVFERRFVTSYMDDSEVMMAYRDGLRVQAVVADCKNY***********
Disordered Region (DISPRO)
NPTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKKDIDFIQALIVTKPVFERRFVTSYMDDSEVMMAYRDGLRVQAVVADCKNYSDEGDP*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NPTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKKDIDFIQALIVTKPVFERRFVTSYMDDSEVMMAYRDGLRVQAVVADCKNYSDEGDPELSRT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
255593266	377	conserved hypothetical protein [Ricinus	0.906	0.721	0.470	2e-70
225432338	399	PREDICTED: uncharacterized protein LOC10	0.95	0.714	0.368	1e-49
225432336	389	PREDICTED: uncharacterized protein LOC10	0.886	0.683	0.387	8e-48
147823269	719	hypothetical protein VITISV_017397 [Viti	0.9	0.375	0.377	1e-47
225432342	384	PREDICTED: uncharacterized protein LOC10	0.89	0.695	0.385	1e-47
225432332	396	PREDICTED: uncharacterized protein LOC10	0.9	0.681	0.377	1e-47
225432334	397	PREDICTED: uncharacterized protein LOC10	0.946	0.715	0.367	2e-47
255559286	377	conserved hypothetical protein [Ricinus	0.916	0.729	0.373	7e-47
147823268	396	hypothetical protein VITISV_017396 [Viti	0.946	0.717	0.363	9e-47
147853204	384	hypothetical protein VITISV_003242 [Viti	0.89	0.695	0.382	2e-46

>gi|255593266|ref|XP_002535825.1| conserved hypothetical protein [Ricinus communis] gi|223521814|gb|EEF26558.1| conserved hypothetical protein [Ricinus communis]

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/274 (47%), Positives = 201/274 (73%), Gaps = 2/274 (0%)

Query: 1   NPTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLV 60
           +P+++LAD EK+L+PKI + +S+G++  D+PK LC++ Q+LV SLK+ I+P  ++L+G++
Sbjct: 98  HPSIILADSEKTLKPKIQFLDSLGVAKPDIPKILCTDAQILVSSLKNRILPTIDYLRGIL 157

Query: 61  QTNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLF 120
           +T+  +V A+K+  R +    +  +  NV TLRAHGVPE  I  L ++ P +L+ R DLF
Sbjct: 158 ETDEKVVWALKRCPRALRHGTDT-MVSNVGTLRAHGVPEPNIRSLFILEPLTLLLRVDLF 216

Query: 121 KTMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPM 180
             ++  +K++G EP N  FI A+RSMSV+S++ W++KK+ LMSF WSE EF LAFK QP 
Sbjct: 217 NQVVQEVKEMGFEPANKSFIYALRSMSVMSRSHWQRKKEVLMSFGWSESEFLLAFKLQPF 276

Query: 181 LMLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKK 240
            ML+S KK++ LM+FF+ ++ L+P DIV+CPNL L+SL+KR++PR + L++LMSK L+ K
Sbjct: 277 FMLTSEKKMKVLMEFFLTKLSLEPSDIVKCPNLFLVSLEKRIIPRCTALELLMSKGLIDK 336

Query: 241 DIDFIQALIVTKPVFERRFVTSYMDDS-EVMMAY 273
           ++ FI  L ++K  FE+RF+T +  DS E++ AY
Sbjct: 337 NVSFIWELNMSKKQFEKRFITCFKQDSPELIKAY 370

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432338|ref|XP_002274845.1| PREDICTED: uncharacterized protein LOC100252802 [Vitis vinifera]

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 108/293 (36%), Positives = 177/293 (60%), Gaps = 8/293 (2%)

Query: 2   PTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQ 61
           P LL +DP+K+L PK+ +F S G S  D+ K + S   +L  SL++ IIP F F K  +Q
Sbjct: 107 PRLLASDPDKTLLPKLQFFYSKGASRPDVAKIVVSTPGILYRSLENQIIPSFNFFKDFLQ 166

Query: 62  TNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFK 121
           ++   +  +K+ SRI+  ++   +A N+N L+  GVP+  IA L+M  P + + R +LF+
Sbjct: 167 SDEMAITVIKRFSRILLFDLHTYVASNINALQEFGVPKSNIAGLLMNRPMAFMVRPNLFR 226

Query: 122 TMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPML 181
             ++ +KK+G  P+   F++A+ +M  + K+TWE+K DA   + WSE+E  LAF + P  
Sbjct: 227 ENLEEVKKMGFNPSQMKFVIAIHAMRAMGKSTWERKIDAYKRWGWSEEEIRLAFIKLPRC 286

Query: 182 MLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKKD 241
           M  S  KI   MDFFVN++G +   I R P L+ +SL+KR++PR+SV+QVL+SK L+K D
Sbjct: 287 MTHSEDKIMATMDFFVNKMGRESSLIARRPLLIPLSLEKRIIPRYSVIQVLLSKGLIKND 346

Query: 242 IDFIQALIVTKPVFERRFVTSYMDDS-EVMMAYRDGLR-------VQAVVADC 286
              +     T+ +F R+FV  + +++ ++M  Y++ +        +Q    DC
Sbjct: 347 TSLVVLFESTEKMFLRKFVNGFKEEAPQLMKLYQEKINLSKKQDCLQEGSGDC 399

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432336|ref|XP_002274817.1| PREDICTED: uncharacterized protein LOC100257952 [Vitis vinifera]

 Score =  196 bits (499), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 103/266 (38%), Positives = 164/266 (61%)

Query: 2   PTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQ 61
           P LL +DP+K+L PK+ +F S G S  D+ K + S   +L  SL++ IIP F FLK  +Q
Sbjct: 111 PRLLASDPDKTLLPKLQFFYSKGASKPDVAKIVVSTPGILKRSLENQIIPSFNFLKDFLQ 170

Query: 62  TNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFK 121
           ++   +  VK+ SRI+  ++   +A N+N L+  GVP+  IA L+M  P + +   +LF+
Sbjct: 171 SDEMAITVVKRFSRILLFDLHTYVASNMNALQEFGVPKSNIAGLLMYRPMAFMVNPNLFR 230

Query: 122 TMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPML 181
             ++ +KK+G  P+   F+LA+++M    ++ WE+K D    + WSE+E  LAF + P  
Sbjct: 231 KNLEEVKKMGFNPSQMKFVLAIQAMRAGGESCWERKIDIYKKWGWSEEEIRLAFTKSPWC 290

Query: 182 MLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKKD 241
           M+ S  KI   MDFFVN++G +   I   P L+ +SL+KR++PR+SV+QVL+SK L+ KD
Sbjct: 291 MIYSEDKIMAKMDFFVNKMGRESSLIAHRPFLIGLSLEKRIIPRYSVVQVLLSKGLINKD 350

Query: 242 IDFIQALIVTKPVFERRFVTSYMDDS 267
           I  +     T+  F  RFV +Y +++
Sbjct: 351 ISLVVLFESTEKTFLERFVNAYKEEA 376

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147823269|emb|CAN77553.1| hypothetical protein VITISV_017397 [Vitis vinifera]

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 102/270 (37%), Positives = 167/270 (61%)

Query: 2   PTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQ 61
           P LLL+DP+K+L PK+ +F S G S  D+ K + S+  ++  SL++ +IP + F K  +Q
Sbjct: 108 PQLLLSDPDKTLLPKLQFFYSKGTSKPDVAKIVASSPAIMRRSLENQVIPSYNFFKDFLQ 167

Query: 62  TNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFK 121
           ++   +  VK+ SRI+  +I   +A N+N L+  GVP+  IA L+   P + + R +LF+
Sbjct: 168 SDKMAITVVKRFSRILLFDIHTYVASNMNALQEFGVPKSNIAGLLRNQPMAFMVRPNLFR 227

Query: 122 TMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPML 181
             ++ +KK+G  P+   F++AV+++    K++WE+K D   S+ WSE+E  LAF + P  
Sbjct: 228 ENLEEVKKMGFNPSQMKFVIAVQAIRAGGKSSWERKIDIYKSWGWSEEEIRLAFTKSPWC 287

Query: 182 MLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKKD 241
           M+ S  KI   MDFFVN++G +   I R P L+  SL+KR++PR+SV+QVL+SK L+ KD
Sbjct: 288 MIYSEDKIMTTMDFFVNKMGRESSLIARRPVLISHSLEKRIIPRYSVVQVLLSKGLIDKD 347

Query: 242 IDFIQALIVTKPVFERRFVTSYMDDSEVMM 271
                    T+ +F  +FV  Y +++  +M
Sbjct: 348 FSLPTVFQSTEKMFLHKFVNVYKEEAPQLM 377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432342|ref|XP_002276393.1| PREDICTED: uncharacterized protein LOC100240766 [Vitis vinifera]

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 103/267 (38%), Positives = 166/267 (62%)

Query: 1   NPTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLV 60
            P LL++DP+KSL PK+ +F S G S  D+ K + S   +L  SL++ IIP F F K   
Sbjct: 103 QPQLLVSDPDKSLLPKLHFFYSKGASNPDVVKIIASCPVILKRSLENQIIPSFNFFKDFF 162

Query: 61  QTNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLF 120
           Q+    +  VK+ SR++  N    +  N+N L+  GVP+  IA L+ + P + + R + F
Sbjct: 163 QSEEVTMATVKRFSRVLIVNPHICVESNINALQESGVPKSNIAALLSLQPRAFMVRPNHF 222

Query: 121 KTMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPM 180
           + +++ +KK+G +P+   F  AV++M+ +SK+TWE+K DA   + WSE++ +LAF + P 
Sbjct: 223 REILEEVKKMGFDPSKTRFPTAVQAMTGMSKSTWERKIDAYKRWGWSEEDIWLAFTKSPW 282

Query: 181 LMLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKK 240
            M+ S  KI   MDFFVN++G +   I   P L+ +SL+KR++PR+SV+QVL+SK L+ K
Sbjct: 283 CMIYSEDKIMATMDFFVNKMGRESSLIANRPFLIGLSLEKRIIPRYSVVQVLLSKGLIDK 342

Query: 241 DIDFIQALIVTKPVFERRFVTSYMDDS 267
           DI  +     T+ +F  +FV  Y +++
Sbjct: 343 DISLVVLFESTEKMFLEKFVNGYKEEA 369

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432332|ref|XP_002276324.1| PREDICTED: uncharacterized protein LOC100256384 [Vitis vinifera]

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 102/270 (37%), Positives = 167/270 (61%)

Query: 2   PTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQ 61
           P LLL+DP+K+L PK+ +F S G S  D+ K + S+  ++  SL++ +IP + F K  +Q
Sbjct: 111 PQLLLSDPDKTLLPKLQFFYSKGASKPDVAKIVASSPAIMRRSLENQVIPSYNFFKDFLQ 170

Query: 62  TNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFK 121
           ++   +  VK+ SRI+  +I   +A N+N L+  GVP+  IA L+   P + + R +LF+
Sbjct: 171 SDKMAITVVKRFSRILLFDIHTYVASNMNALQEFGVPKSNIAGLLRNQPMAFMVRPNLFR 230

Query: 122 TMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPML 181
             ++ +KK+G  P+   F++AV+++    K++WE+K D   S+ WSE+E  LAF + P  
Sbjct: 231 ENLEEVKKMGFNPSQMKFVIAVQAIRAGGKSSWERKIDIYKSWGWSEEEIRLAFTKSPWC 290

Query: 182 MLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKKD 241
           M+ S  KI   MDFFVN++G +   I R P L+  SL+KR++PR+SV+QVL+SK L+ KD
Sbjct: 291 MIYSEDKIMTTMDFFVNKMGRESSLIARRPVLISHSLEKRIIPRYSVVQVLLSKGLIDKD 350

Query: 242 IDFIQALIVTKPVFERRFVTSYMDDSEVMM 271
                    T+ +F  +FV  Y +++  +M
Sbjct: 351 FSLPTVFQSTEKMFLHKFVNVYKEEAPQLM 380

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432334|ref|XP_002276352.1| PREDICTED: uncharacterized protein LOC100251002 [Vitis vinifera]

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 105/286 (36%), Positives = 174/286 (60%), Gaps = 2/286 (0%)

Query: 2   PTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQ 61
           P LLL+DP+K+L PK+ +F S G S  D+ K +  +  +L  SL++ IIP F F K  +Q
Sbjct: 112 PQLLLSDPDKTLLPKLQFFYSKGASWPDIAKIVVCSPSILKRSLENQIIPSFNFFKDFLQ 171

Query: 62  TNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFK 121
           ++   +  VK+ SRI+  ++   +A N+N L+  GVP+  IA L+M  P + + R +LF+
Sbjct: 172 SDKMAITVVKRFSRILLFDLHTYVASNMNALQEFGVPKSNIAGLLMNQPMAFMVRPNLFR 231

Query: 122 TMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPML 181
             ++ +KK+G  P+   F++A++++    K++WE+K D    + WSE+E  LAF + P  
Sbjct: 232 ENLEEVKKMGSNPSQMKFVIAIQAIRAGGKSSWERKIDIYKRWGWSEEEIRLAFTKSPWC 291

Query: 182 MLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKKD 241
           M+ S  KI   MDFFVN++G +   I R P L+  SL+KR++PR+SV+QVL+SK L+ KD
Sbjct: 292 MIYSEDKIMATMDFFVNKMGRESSSIARRPQLISPSLEKRIIPRYSVVQVLLSKGLISKD 351

Query: 242 IDFIQALIVTKPVFERRFVTSYMDDS-EVMMAYRDGLRVQAVVADC 286
                    T+ +F  +FV  Y +++ +++  Y++ L +     DC
Sbjct: 352 FSLSAVFQSTEIMFLHKFVDVYKEEAPQLLNLYQEKLNLTK-KQDC 396

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559286|ref|XP_002520663.1| conserved hypothetical protein [Ricinus communis] gi|223540048|gb|EEF41625.1| conserved hypothetical protein [Ricinus communis]

 Score =  193 bits (491), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 103/276 (37%), Positives = 170/276 (61%), Gaps = 1/276 (0%)

Query: 2   PTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQ 61
           P+LLLA    +L PK+++F S+G+S +DL + L S+  LL  S+++ I+P + FLK ++ 
Sbjct: 94  PSLLLAHAHNTLLPKLEFFYSIGVSSSDLARTLSSDPTLLTRSIENQIVPSYNFLKSILL 153

Query: 62  TNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFK 121
           +N  +V A+K+++ I   +  K L PNV  LR  GV    I+ L+   P ++++R   F 
Sbjct: 154 SNEKIVSALKRTTWIFLEDYSKNLMPNVERLREIGVTHSCISLLLTNFPEAVLQRHGEFN 213

Query: 122 TMMDVIKKIGIEPTNFMFILAVRSMSVLS-KATWEKKKDALMSFSWSEDEFYLAFKRQPM 180
            ++  +K++G +P   +F++AV ++S  S KA W K  +    + WS+D+ + AFK+ P 
Sbjct: 214 KVVKEVKEMGFDPKKSIFVMAVHAISGKSNKAIWNKCFEVYKRWDWSKDDIFAAFKKHPH 273

Query: 181 LMLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKK 240
            M+ S KKI   MDFFVN++GL    I +CP LL  SL+KR++PR  V++VLM+K L+KK
Sbjct: 274 CMMLSEKKIMLAMDFFVNKMGLPSKVIAQCPVLLFFSLEKRIVPRCRVIRVLMNKGLVKK 333

Query: 241 DIDFIQALIVTKPVFERRFVTSYMDDSEVMMAYRDG 276
           D+     L+ T+  F  RFV  Y ++  +++   +G
Sbjct: 334 DVSLATVLVPTEKCFLDRFVIKYEEEVPLLLRVYEG 369

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147823268|emb|CAN77552.1| hypothetical protein VITISV_017396 [Vitis vinifera]

 Score =  193 bits (490), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 104/286 (36%), Positives = 172/286 (60%), Gaps = 2/286 (0%)

Query: 2   PTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQ 61
           P LLL+DP+K+L PK+ +F S G S  D+ K +  +  +L  SL++ IIP F F K  +Q
Sbjct: 111 PQLLLSDPDKTLLPKLQFFYSKGASWPDIAKIVVCSPSILKRSLENQIIPSFNFFKDXLQ 170

Query: 62  TNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFK 121
           ++   +  VK+ SRI+  ++   +A N+N L+  GVP+  IA L+M  P + + R +LF+
Sbjct: 171 SDKMAITVVKRFSRILLFDLHTYVASNMNALQEFGVPKSNIAGLLMNQPMAFMVRPNLFR 230

Query: 122 TMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPML 181
             ++ +K +G  P+   F++A++++    K +WE+K D    + WSE+E  LAF + P  
Sbjct: 231 ENLEEVKXMGFNPSQMKFVIAIQAIRAGGKXSWERKIDIYKRWGWSEEEIRLAFTKSPWC 290

Query: 182 MLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKKD 241
           M+ S  KI   MDFFVN++G +   I R P L+  SL+KR++PR+SV+QVL+SK L+ KD
Sbjct: 291 MIYSEDKIMATMDFFVNKMGRESSSIARRPQLISPSLEKRIIPRYSVVQVLLSKGLINKD 350

Query: 242 IDFIQALIVTKPVFERRFVTSYMDDS-EVMMAYRDGLRVQAVVADC 286
                    T+ +F  +FV  Y +++ +++  Y++ L +     DC
Sbjct: 351 FSLSAVFQSTEIMFLHKFVDVYKEEAPQLLNLYQEKLNLTK-KQDC 395

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853204|emb|CAN78550.1| hypothetical protein VITISV_003242 [Vitis vinifera]

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 102/267 (38%), Positives = 165/267 (61%)

Query: 1   NPTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLV 60
            P LL++DP+KSL  K+ +F S G S  D+ K + S   +L  SL++ IIP F F K   
Sbjct: 103 QPQLLVSDPDKSLLLKLHFFYSKGASNPDVVKIIASCPVILKRSLENQIIPSFNFFKDFF 162

Query: 61  QTNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLF 120
           Q+    +  VK+ SR++  N    +  N+N L+  GVP+  IA L+ + P + + R + F
Sbjct: 163 QSEEMTMATVKRFSRVLIVNPHICVESNINALQESGVPKSNIAALLSLQPRAFMVRPNHF 222

Query: 121 KTMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPM 180
           + +++ +KK+G +P+   F  AV++M+ +SK+TWE+K DA   + WSE++ +LAF + P 
Sbjct: 223 REILEEVKKMGFDPSKTRFPTAVQAMTGMSKSTWERKIDAYKRWGWSEEDIWLAFTKSPW 282

Query: 181 LMLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKK 240
            M+ S  KI   MDFFVN++G +   I   P L+ +SL+KR++PR+SV+QVL+SK L+ K
Sbjct: 283 CMIYSEDKIMATMDFFVNKMGRESSLIANRPFLIGLSLEKRIIPRYSVVQVLLSKGLIDK 342

Query: 241 DIDFIQALIVTKPVFERRFVTSYMDDS 267
           DI  +     T+ +F  +FV  Y +++
Sbjct: 343 DISLVVLFESTEKMFLEKFVNGYKEEA 369

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
TAIR|locus:2142763	405	AT5G07900 "AT5G07900" [Arabido	0.906	0.671	0.335	5.2e-42
TAIR|locus:2199612	390	AT1G21150 "AT1G21150" [Arabido	0.883	0.679	0.304	1.5e-33
TAIR|locus:2177734	391	AT5G64950 "AT5G64950" [Arabido	0.913	0.700	0.276	6.6e-26
TAIR|locus:2036858	418	AT1G61970 "AT1G61970" [Arabido	0.626	0.449	0.26	1.4e-13
TAIR|locus:2207265	399	AT1G79220 [Arabidopsis thalian	0.966	0.726	0.224	3.1e-13
TAIR|locus:2018057	437	AT1G62120 "AT1G62120" [Arabido	0.63	0.432	0.258	5.2e-13
TAIR|locus:2018042	462	AT1G62110 "AT1G62110" [Arabido	0.68	0.441	0.236	3.2e-12
TAIR|locus:2036878	414	AT1G61990 "AT1G61990" [Arabido	0.9	0.652	0.245	4.4e-12
TAIR|locus:2102827	450	AT3G46950 "AT3G46950" [Arabido	0.66	0.44	0.256	7e-12
TAIR|locus:2036868	418	AT1G61980 "AT1G61980" [Arabido	0.64	0.459	0.25	2.1e-10

TAIR|locus:2142763 AT5G07900 "AT5G07900" [Arabidopsis thaliana (taxid:3702)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 92/274 (33%), Positives = 161/274 (58%)

Query:     2 PTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQ 61
             P LLLA+ E  L PK+ +F S+G+S + L + L S+  +L  SL + +IP + FLK ++ 
Sbjct:   126 PVLLLANAESVLLPKLSFFLSIGVSKSLLARTLASDPTILTRSLVNQLIPSYNFLKSVLD 185

Query:    62 TNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFK 121
             ++  +V A+++++ +   +  K L PN+N +   GVPE  I  L+   P +++++   F+
Sbjct:   186 SDEKIVAALRRTTWVFLEDHTKNLVPNINYMAETGVPEKCIKLLLTHFPEAVMQKNHEFQ 245

Query:   122 TMMDVIKKIGIEPTNFMFILAVRSMSVL-SKATWEKKKDALMSFSWSEDEFYLAFKRQPM 180
              +    +++G  P    F+LA+ ++S   +K+ W+K  +    + WSED+   AFK+ P 
Sbjct:   246 AIAKQAQEMGFNPQKSTFVLAIHALSGKGNKSIWDKCFEVYQRWGWSEDDIMCAFKKHPH 305

Query:   181 LMLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKK 240
              M+ S +KI   M++FVNE+ + P  I +CP +L  SL+KR++PR SV +VL+S  L+K+
Sbjct:   306 CMMLSERKINRTMEYFVNEMNMAPRSIAQCPVVLFFSLEKRIIPRCSVTKVLVSNGLVKE 365

Query:   241 DIDFIQALIVTKPVFERRFVTSYMDD-SEVMMAY 273
             D      L+  + VF  + V  Y ++  E+M  Y
Sbjct:   366 DWSLTSLLVPVEKVFLEKLVIKYEEELPELMNLY 399

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2199612 AT1G21150 "AT1G21150" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 81/266 (30%), Positives = 142/266 (53%)

Query:     2 PTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQ 61
             P +L   PE  + PK+ +F S+G S +D  K + S+ ++L  SL   +IP ++ LK ++ 
Sbjct:   113 PRVLSLSPEDVISPKLMFFSSIGFSTSDTAKMISSSPKMLSYSLHKRLIPCYDSLKSILV 172

Query:    62 TNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFK 121
                ++V  +K+  R  +  I   ++  V+  R  GVP+  I  L+  +P +   R   F 
Sbjct:   173 EEESVVKCLKRGIRCFSLKITHCVSLRVSICRELGVPDKSIKWLVQASPFTFFSRERRFN 232

Query:   122 TMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPML 181
              +++ +   G +P    F+ A+ +    S++  E+K      F WS+++F  A  R P  
Sbjct:   233 EVLNRVCSYGFDPKKAGFVHAMVAFDCTSESAMERKFKLFQCFGWSKEDFVAAIMRFPNC 292

Query:   182 MLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKK- 240
             +  S +KI   +++ VN IGL+  DIV  P +L +S++KR+ PR  V+ +L+SK L+KK 
Sbjct:   293 VTVSDEKIMYTLEYLVNNIGLQARDIVARPVVLSLSMEKRIKPRNQVISLLLSKGLVKKE 352

Query:   241 DIDFIQALIVTKPVFERRFVTSYMDD 266
             DI++   L +    F  +FV  Y D+
Sbjct:   353 DINYFTILKLKSSEFMDKFVLKYQDE 378

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2177734 AT5G64950 "AT5G64950" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 78/282 (27%), Positives = 147/282 (52%)

Query:     1 NPTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLV 60
             +P ++  + EK L PK+ +F+ +G +G+ L KF+  N  ++ VSL   +IP  E LK +V
Sbjct:    95 HPRMMFYNVEKILEPKLRFFKDIGFTGSGLGKFVSQNSSVVGVSLVKKLIPTVEILKSIV 154

Query:    61 QT-NVNLVHAVKQSS-RIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRD 118
                + +L   + +    +++ +    L PN++ L   G+    +A L+   P       +
Sbjct:   155 APKHEDLPVILSRCGWLLLSRDPNLFLLPNISYLETCGIVGSQLASLLRRQPRIFNLSEE 214

Query:   119 LFKTMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQ 178
               +  +     +G    + M + AV S+S LS+ T+++K    M+  +SEDE     +R 
Sbjct:   215 KLRGYVSRALDLGFTLNSRMLVHAVISLSSLSEKTFDRKVKLFMANGFSEDEITDIIRRS 274

Query:   179 PMLMLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLL 238
             P L+  S  K+    +F++  +GL+   + + P +L  +L+KRV+PR  VLQ+L  K LL
Sbjct:   275 PGLIRCSEDKLTLGFEFYLKRMGLEREALAKRPCVLSYNLEKRVIPRLKVLQILREKGLL 334

Query:   239 ----KKDIDFIQALIVTKPVFERRFVTSYMDD--SEVMMAYR 274
                 KK  + +  + +T+  F  ++V  + D+   E+++AY+
Sbjct:   335 LKEEKKKKNMVGIVEMTEEAFLEKYVVRFGDEIAEELLVAYK 376

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036858 AT1G61970 "AT1G61970" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 52/200 (26%), Positives = 106/200 (53%)

Query:     2 PTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLV- 60
             P LL+AD EKSL PK+ + +S G S +++ + + S  ++L       I   ++F+K  + 
Sbjct:   109 PQLLIADAEKSLGPKLQFLQSRGASSSEITEIVSSVPEILGKKGHKTISVYYDFIKDTLL 168

Query:    61 ---QTNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRR 117
                  N  L H++ Q       N+E ++  NV+ LR  G+P  L+  L+ I+ S  +  +
Sbjct:   169 EKSSKNEKLCHSLPQG------NLENKIR-NVSVLRELGMPHKLLFSLL-ISDSQPVCGK 220

Query:   118 DLFKTMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKR 177
             + F+  +  + ++G +PT   F+ A++ +  +++ T E+K     S  +   + + +FK+
Sbjct:   221 EKFEETLKKVVEMGFDPTTSKFVEALQVIYKMNEKTIEEKVHLYKSLGFDVGDVWSSFKK 280

Query:   178 QPMLMLSSTKKIRELMDFFV 197
              P+ +  S KK+ + ++ F+
Sbjct:   281 WPISLRVSEKKMLDSIETFL 300

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2207265 AT1G79220 [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 3.1e-13, P = 3.1e-13
 Identities = 67/298 (22%), Positives = 142/298 (47%)

Query:     2 PTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQ 61
             P L  A+  + L  K+   + +GI+ +DL K L    +     L  +   I  F++ L  
Sbjct:   105 PALQRANVAQ-LEFKLSLLKPLGITSSDLVKILNCRPRFFSCRLVLDE-RINYFMEILGS 162

Query:    62 TNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFK 121
               V L   + ++  ++  +++ ++ P +   +  G  +  +  +++  P+ LI R +   
Sbjct:   163 KEV-LRRVIIRNPSLMLYDLDDKIKPAIEYYKGLGFSQQDLVAMLISRPT-LIPRTNFNN 220

Query:   122 TMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPML 181
                + I+K G+   + MF      + V    T E+K   L  F +SE+E +  + + P+L
Sbjct:   221 EKFEYIEKTGVTRESKMFKYVAVIIGVSRMETIEEKVRNLEKFGFSEEEIWHLYGKCPIL 280

Query:   182 MLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNL--LK 239
             +  S +K++  M F +  + L    +V+ P LLL++L+ R+ PR  +++ ++   L  L 
Sbjct:   281 LSLSVEKVQRNMTFVIASMKLPAHSVVKHPCLLLLNLESRLKPRADLVKRVLEMRLKPLI 340

Query:   240 KDIDFIQALIVTKPVFERRFVTSYMDD--SEVMMAYRDGLRVQAVVADCKNYSDEGDP 295
             K++   +A+ +++  F + +V  +  D  +E+M  Y     ++ +    K Y  +G P
Sbjct:   341 KEVSIFRAVRMSEKRFLKVYVMCHPQDIATELMEFYEKSKNMKRLAEKSKKYIRKGFP 398

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2018057 AT1G62120 "AT1G62120" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 5.2e-13, P = 5.2e-13
 Identities = 52/201 (25%), Positives = 105/201 (52%)

Query:     2 PTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQ 61
             P LL+ D EKSL PK+ + +S+G S ++L + + +  ++L      ++   ++F+K +++
Sbjct:   113 PRLLILDAEKSLAPKLQFLQSIGASSSELTETVSAVPKILGKRKGKSLSRYYDFVKVIIE 172

Query:    62 TNVN-----LVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKR 116
              + +     L H++ + S+      E ++  N+  LR  GVP+ L+  L+ I+ +  +  
Sbjct:   173 ADKSSKLEKLCHSLPEGSKQ-----ENKIR-NLLVLREMGVPQRLLFSLL-ISDAGDVCG 225

Query:   117 RDLFKTMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFK 176
             ++ FK  +    +IG +PT   F+ A+  +  LS    E K +A      + D+ +  FK
Sbjct:   226 KEKFKESLKKAVEIGFDPTTATFVKALNVLYGLSDKGIENKFNACKRLGLAVDDVWAMFK 285

Query:   177 RQPMLMLSSTKKIRELMDFFV 197
             + P ++  S KKI   ++ F+
Sbjct:   286 KWPNILTKSEKKIENSVETFL 306

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2018042 AT1G62110 "AT1G62110" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 3.2e-12, P = 3.2e-12
 Identities = 49/207 (23%), Positives = 109/207 (52%)

Query:     2 PTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQ 61
             P LLL D EKSL  K+ + ES G S  +L + + +  ++L +    ++   ++F+K +++
Sbjct:   109 PRLLLIDAEKSLDIKLQFLESRGASSPELTQIVSTVPKILGMKEGKSLGRYYDFVKEIIE 168

Query:    62 TNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFK 121
              + +  +       +   N +     NV+ LR  GVP+ L+  L+ I+ +  +  ++ F+
Sbjct:   169 ADKSSKYETL-CQPLPEANRQGNKIRNVSVLRDLGVPQKLLFSLL-ISDAQPVCGKENFE 226

Query:   122 TMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPML 181
               +  + ++G +PT   F+ A+R++   +  T E++ +    F ++ ++ +  FK+ P  
Sbjct:   227 ESLKKVVEMGFDPTTSKFVQALRAVYRFTDKTIEERVNVYKGFGFAVEDVWAMFKKCPYF 286

Query:   182 MLSSTKKIRELMDFFVNEIGLKPLDIV 208
             + SS KKI + ++  + + GL   +++
Sbjct:   287 LNSSEKKIGQTIET-LKKCGLLEDEVI 312

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036878 AT1G61990 "AT1G61990" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 4.4e-12, P = 4.4e-12
 Identities = 74/302 (24%), Positives = 148/302 (49%)

Query:     2 PTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQ 61
             P LL+AD +K+L  K+   +S G S +++ + + +  ++L    K +I   ++ +K ++ 
Sbjct:   109 PLLLVADAKKALGRKLQILQSRGASSSEITEIVSTVPRILG---KKSITVYYDAVKDIIV 165

Query:    62 TNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFK 121
              + +  + + Q S+     I      NV+ LR  G+P  L+  L+ ++ S  +  ++ F 
Sbjct:   166 ADTSSSYELPQGSQ--GNKIR-----NVSALRELGMPSRLLLPLL-VSKSQPVCGKENFD 217

Query:   122 TMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPML 181
               +  + ++G +PT   F+LA+R +  +S+ T E+K     S  ++ D+ +  FK+ P +
Sbjct:   218 ASLKKVVEMGFDPTTTKFVLALRMLYQMSEKTIEEKVVVFRSLGFTVDDVWEIFKKTPSV 277

Query:   182 MLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLP--RWSVLQVLMSKNLLK 239
             +  S KKI +  + F+ ++G       R   L+++   KR  P   +SV  V      L 
Sbjct:   278 LKVSKKKILKSAETFL-DLGYS-----RAEFLMMV---KRYPPCIEYSVESVKKKNEFLV 328

Query:   240 KDIDFIQALIVTKP-VF----ERRFVTSYMDDSEVMMA---YRDGLRVQAVVADCKNYSD 291
             K + + +  +V  P VF    E+R +    +  E +++    R G  + AV +   + +D
Sbjct:   329 KKMKWPRNALVLHPQVFGYSMEKRIIPR-CNILEALLSKGLLRKGSELPAV-SSVLSCTD 386

Query:   292 EG 293
             EG
Sbjct:   387 EG 388

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2102827 AT3G46950 "AT3G46950" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 7.0e-12, P = 7.0e-12
 Identities = 53/207 (25%), Positives = 106/207 (51%)

Query:     2 PTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQ 61
             P LL+ D EKSLRPK+ + +S G S +++ + + +   +L    + ++   ++F+K ++Q
Sbjct:   109 PRLLVTDAEKSLRPKLQFLKSRGASSSEVIEIVSNVPTILDKKGEESVSLYYDFVKDIMQ 168

Query:    62 TNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFK 121
                +L  +  +  +        R+  N++ LR  GVP+ L+  L+ I+    +  ++ F+
Sbjct:   169 DGKSLCISCPEGKK------GNRIR-NISVLRELGVPQKLLFSLL-ISRYQPVCGKEKFE 220

Query:   122 TMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPML 181
               +  +  +G +P    F+ A+  +  +S+ T E+K +      +SE E +  FK+ P  
Sbjct:   221 ESLKKVVDMGFDPAKSKFVEALHVVYEMSEKTIEEKVNVYKRLGFSEAEIWAIFKKWPYF 280

Query:   182 MLSSTKKIRELMDFFVNEIGLKPLDIV 208
             +  S KKI  LM   + + GL   +I+
Sbjct:   281 LKFSEKKII-LMFETLKKCGLVEEEII 306

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036868 AT1G61980 "AT1G61980" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 49/196 (25%), Positives = 96/196 (48%)

Query:     2 PTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQ 61
             P LL+AD EKSL PK+ + +S G S ++L + + +  ++L       I   ++F+K  + 
Sbjct:   109 PQLLVADAEKSLAPKLQFLQSRGASSSELTEIVSTVPKILGKRGHKTISVFYDFIKETLL 168

Query:    62 TNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFK 121
                +   + K        N+E ++  N++ LR  G+P  L+  L+ I+    +  ++ F+
Sbjct:   169 DKSS--KSEKSCQPFPQGNLENKIR-NLSVLRELGMPHKLLFPLL-ISCDVPVFGKEKFE 224

Query:   122 TMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPML 181
               +  + ++G +P+   F+ A+  +  LS    E K +A     +  +  +  FKR P  
Sbjct:   225 ESLKKVVEMGFDPSTSKFVEALCVVQRLSDKNIEDKVNAYKRLGFDVEYVWTVFKRWPNF 284

Query:   182 MLSSTKKIRELMDFFV 197
             +  S KKI   ++ F+
Sbjct:   285 LTHSEKKILNTIETFL 300

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0005739 "mitochondrion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019795001 SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (1161 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	300
pfam02536	345	pfam02536, mTERF, mTERF	2e-14
pfam02536	345	pfam02536, mTERF, mTERF	8e-11
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	9e-09
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	0.004

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 72.1 bits (177), Expect = 2e-14
 Identities = 53/275 (19%), Positives = 94/275 (34%), Gaps = 37/275 (13%)

Query: 1   NPTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLV 60
            P +L     KS+    D+ + + ++  D    L    + L      N I     L+ L 
Sbjct: 57  VPKILGKKGVKSISSVYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELG 116

Query: 61  QTN--------------------------VNLVHAVKQSSR--IINCN------IEKRLA 86
                                        V  +     + +  I           +K + 
Sbjct: 117 VPPKLLFSLLISRPRPVCGKEVFEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTIK 176

Query: 87  PNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFKTM-MDVIKKIGIEPTNFMFILAVRS 145
           PNV  L++ G     +  ++   P  L       K +    I K          I  +  
Sbjct: 177 PNVEFLKSLGFSVEDVWAILKKCPELLG--SSEKKKLQTQEILKTCGLLEFLSVIKKMPQ 234

Query: 146 MSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPL 205
               S+     K + L+   +S +E     KR P L+  S +K+++  +F V E+     
Sbjct: 235 FVSYSEQKILNKIEFLLGLGFSREEIAKMVKRCPQLLGLSVEKVKKKTEFLVKEMNWPLK 294

Query: 206 DIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKK 240
           ++V  P +   SL+KR+ PR +V++ LMSK     
Sbjct: 295 ELVEFPQVFGYSLEKRIKPRCNVVKALMSKGKSIL 329

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 61.7 bits (150), Expect = 8e-11
 Identities = 50/190 (26%), Positives = 99/190 (52%), Gaps = 3/190 (1%)

Query: 2   PTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQ 61
           P LL AD EK+L+PK+ + +S G S ++L K + +  ++L      +I  +++FLK ++ 
Sbjct: 22  PLLLGADAEKNLQPKLQFLQSRGASKSELTKIVSTVPKILGKKGVKSISSVYDFLKKIIV 81

Query: 62  TNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFK 121
            +++    +++    +          NV+ LR  GVP  L+  L +I+    +  +++F+
Sbjct: 82  ADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELGVPPKLLFSL-LISRPRPVCGKEVFE 140

Query: 122 TMMDVIKKIGIEPTNFMFILAVRSMSVL--SKATWEKKKDALMSFSWSEDEFYLAFKRQP 179
             +  + ++G +PT F  ++A R   +L  S  T +   + L S  +S ++ +   K+ P
Sbjct: 141 ESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTIKPNVEFLKSLGFSVEDVWAILKKCP 200

Query: 180 MLMLSSTKKI 189
            L+ SS KK 
Sbjct: 201 ELLGSSEKKK 210

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 55.9 bits (135), Expect = 9e-09
 Identities = 59/306 (19%), Positives = 132/306 (43%), Gaps = 27/306 (8%)

Query: 2   PTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQ 61
           P LL    E ++   + Y  S+G++  D+   L    ++L + + +NI P  ++L+ L  
Sbjct: 185 PELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGL 244

Query: 62  TNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPS--------SL 113
             + +   +++   I+  ++E+ + PNV  L   GV +  +  +I   P          L
Sbjct: 245 PRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKL 304

Query: 114 IKRRDLFKTMMDVIKKIGIEPTNFMFILA-VRSMSVLSKATWEKKKDALMSFSWSEDEFY 172
            +++           K+ I+P +F  ++  +  +  L++    K  + L    +S  +  
Sbjct: 305 AEQQYWLT------SKLKIDPEDFGRVIEKLPQIVSLNRNVALKHVEFLRGRGFSAQDVA 358

Query: 173 LAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVL 232
               R P ++  + + ++  ++FF  E+     ++V  P      L+ R+ PR+      
Sbjct: 359 KMVVRCPQILALNLEIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRY------ 412

Query: 233 MSKNLLKKDIDFIQA--LIVTKPVFERRFVTSYMDDSEVMMAYRDGLRVQAVVADCKNYS 290
             + + KK I    A  L  +   FE+R    +++  E+   +  G +++  +   ++ S
Sbjct: 413 --ERVAKKGIKCSLAWFLNCSDDKFEQRMSGDFIEGEEMEPLFSMGGKLE--MPGSESVS 468

Query: 291 DEGDPE 296
           DE D +
Sbjct: 469 DEEDDD 474

Length = 487

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 46/213 (21%), Positives = 97/213 (45%), Gaps = 6/213 (2%)

Query: 2   PTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQ 61
           P +L    +K++ P +DY E +G++ + LP+ L    Q+L  S+  ++ P+ ++L+GL  
Sbjct: 113 PLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDV 172

Query: 62  TNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKR-RDLF 120
              ++   +++   ++   +E  ++ +V  L + GV    I  ++   P  L  R  +  
Sbjct: 173 KRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNI 232

Query: 121 KTMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKK---DALMSFSWSEDEFYLAFKR 177
           K  +D ++ +G+       IL  R   +L     E  K   + L+ F   ++       +
Sbjct: 233 KPKVDYLESLGLPRLAVARILEKRPY-ILGFDLEETVKPNVECLLEFGVRKEALPSVIAQ 291

Query: 178 QP-MLMLSSTKKIRELMDFFVNEIGLKPLDIVR 209
            P +L L    K+ E   +  +++ + P D  R
Sbjct: 292 YPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGR 324

Length = 487

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	300
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	99.96
KOG1267	413	consensus Mitochondrial transcription termination	99.91
KOG1267	413	consensus Mitochondrial transcription termination	99.87
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	97.47
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	97.38
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	93.98
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	91.42
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	83.36
PF04695	136	Pex14_N: Peroxisomal membrane anchor protein (Pex1	82.04

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=7.7e-53  Score=403.55  Aligned_cols=261  Identities=17%  Similarity=0.316  Sum_probs=233.6

Q ss_pred             CCCceecCcCCChhHHHHHHHhCCCCCCchhHHHhhcCccccccccCcchhhhhHhhhhccCChhHHHHHHhCCcccccc
Q 043018            1 NPTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCN   80 (300)
Q Consensus         1 ~P~lL~~~~~~~l~~~l~~L~~lG~s~~~i~~ii~~~P~lL~~s~e~~l~p~v~fL~~~g~~~~~v~~il~~~P~iL~~s   80 (300)
                      +|++|.+++++++.|+++||+++|++.++|++++.++|++|++++++++.|+++||.++|++.+++++++.++|++|+++
T Consensus       148 ~P~lL~~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~s  227 (487)
T PLN03196        148 YPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMR  227 (487)
T ss_pred             CCceecccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcC
Confidence            68999999998899999999999999999999999999999999888899999999999999999999999999999999


Q ss_pred             hhhhhhhHHHHHHhcCCChHHHHHHhhhCCcceeechh-hHHHHHHHHHHhCCCCCChhH--------------------
Q 043018           81 IEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRD-LFKTMMDVIKKIGIEPTNFMF--------------------  139 (300)
Q Consensus        81 ~e~~l~~~v~~L~~lGl~~~~i~~ll~~~P~ll~~~~~-~l~~~v~~L~~lG~~~~~~~~--------------------  139 (300)
                      ++++++|+++||+++|++.++|++++.++|++|+.+.+ ++++++++|+++|++++...+                    
T Consensus       228 ve~~i~P~v~fL~~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~  307 (487)
T PLN03196        228 VGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQ  307 (487)
T ss_pred             hhhhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHH
Confidence            98889999999999999999999999999999988876 788899998888888653211                    


Q ss_pred             ------------------HHHHHHHhhccHHHHHHHHHHHHhCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHHHhC
Q 043018          140 ------------------ILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIG  201 (300)
Q Consensus       140 ------------------~~~~~~l~~~~~~~l~~kv~~l~~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~g  201 (300)
                                        +.+.+.+++.++++|.++++||+++||+.++|..|++++|++|++|.++|++|++||+++||
T Consensus       308 ~~fL~~~lG~s~e~i~~~v~k~P~il~lSe~kl~~kvefL~~~Gls~edI~~mv~k~P~lL~~S~~~l~~k~dFlvneMg  387 (487)
T PLN03196        308 QYWLTSKLKIDPEDFGRVIEKLPQIVSLNRNVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEMK  387 (487)
T ss_pred             HHHHHHhhCCCHHHHHHHHHhcchhhcccHHHHHHHHHHHHHcCCCHHHHHHHHHhCCceeeccHHHHHHHHHHHHHHhC
Confidence                              11233455678889999999999999999999999999999999999999999999999999


Q ss_pred             CChhhhhhCCcccccCccccchhhHHHHHHHHHCCCCcCCCCchhhcccChhhHHHHhcccCcChH
Q 043018          202 LKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKKDIDFIQALIVTKPVFERRFVTSYMDDS  267 (300)
Q Consensus       202 ~~~~~i~~~P~ll~~sle~ri~pR~~~l~~L~~~Gl~~~~~~l~~~l~~s~~~F~~~~v~~~~~~~  267 (300)
                      ++.++|+++|++|+||+|+||+|||++++   ++|+   ++++.++|+|||++|+++||.+|.|+.
T Consensus       388 ~~~~~Iv~fP~~LsySLEkRI~PR~~~L~---~kGl---~~sL~~~L~~sd~~F~~r~v~~y~e~~  447 (487)
T PLN03196        388 RPLKELVEFPAYFTYGLESRIKPRYERVA---KKGI---KCSLAWFLNCSDDKFEQRMSGDFIEGE  447 (487)
T ss_pred             CCHHHHHhChHHhccChhhhhHHHHHHHH---HcCC---CCCHHHHhccCHHHHHHHHhhhccccc
Confidence            99999999999999999999999998755   9998   589999999999999999999998853

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=1.6e-47  Score=355.21  Aligned_cols=256  Identities=33%  Similarity=0.568  Sum_probs=201.5

Q ss_pred             CCCceecCcCCChhHHHHHHHhCCCCCCchhHHHhhcCccccccccCcchhhhhHhhhhccCChhHHHHHHhCCcccccc
Q 043018            1 NPTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCN   80 (300)
Q Consensus         1 ~P~lL~~~~~~~l~~~l~~L~~lG~s~~~i~~ii~~~P~lL~~s~e~~l~p~v~fL~~~g~~~~~v~~il~~~P~iL~~s   80 (300)
                      +|.+|.+++++++.|+++||.++|++.+|++++++++|.+|..++++++.|.++||+++|++++++.+++.++|++|..+
T Consensus        21 ~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~s~~d~~~~l~r~p~~l~~~  100 (345)
T PF02536_consen   21 YPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGLSDEDIVKVLKRYPRILSFS  100 (345)
T ss_dssp             H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS-HHHHHHHHHH-SHHHHS-
T ss_pred             CCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcCCHHHHHHHHHhcchhhccc
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhhhhhHHHHHHhcCCChHHHHHHhhhCCccee-----------------------------------echhhHHHHHH
Q 043018           81 IEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLI-----------------------------------KRRDLFKTMMD  125 (300)
Q Consensus        81 ~e~~l~~~v~~L~~lGl~~~~i~~ll~~~P~ll~-----------------------------------~~~~~l~~~v~  125 (300)
                      .++++.+++++|+++|++.+.+.+++...|..+.                                   .+.+.++++++
T Consensus       101 ~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~~~~~~~v~~l~~lG~~~~~~~~vi~~~P~~l~~~~~~~~~~~v~  180 (345)
T PF02536_consen  101 VEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSSEKIKERVEFLKELGFDPEKIGRVIAKNPRLLLSDSESELKPKVE  180 (345)
T ss_dssp             --HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS-HHHHCHHHHHCCCTSSHHHHCCCHHHHHHHHCGSCCCCCHHHHH
T ss_pred             hHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccchhHHHHHHHHHHHhCCCchhhcccccccchhhccccHHHHHHHHH
Confidence            7778999999999988888867776666666432                                   13457899999


Q ss_pred             HHHHhCCCCCChh--HHHH--------------------------------HHHHhhccHHHHHHHHHHHHhCCCCHHHH
Q 043018          126 VIKKIGIEPTNFM--FILA--------------------------------VRSMSVLSKATWEKKKDALMSFSWSEDEF  171 (300)
Q Consensus       126 ~L~~lG~~~~~~~--~~~~--------------------------------~~~l~~~~~~~l~~kv~~l~~lG~s~~~i  171 (300)
                      +|+++|++.++..  +...                                .+.++..+.+++.++++||+++||+.+||
T Consensus       181 ~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~~~~~~l~~~i~~L~~lG~s~~ei  260 (345)
T PF02536_consen  181 FLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQILSLSEEKLKPKIEFLQSLGFSEEEI  260 (345)
T ss_dssp             HHHHCTT-GHHHHHHHHHTTTGGGCGCHC---------------------------THHHHHHHHHHHHHHTTT--HHHH
T ss_pred             HHHhhcccchhhhHHhhcccceecccccccccccccccccccccccccccccccccccchHhHHHHHHHHHHhcCcHHHH
Confidence            9999999876421  1111                                22333445668999999999999999999


Q ss_pred             HHHHHcCCcccccchhhHHHHHHHHHHHhCCChhhhhhCCcccccCccccchhhHHHHHHHHHCCCCcCCCCchhhcccC
Q 043018          172 YLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKKDIDFIQALIVT  251 (300)
Q Consensus       172 ~~m~~~~P~iL~~S~~~l~~ki~fl~~~~g~~~~~i~~~P~ll~~sle~ri~pR~~~l~~L~~~Gl~~~~~~l~~~l~~s  251 (300)
                      .+|+.++|++|++|.+++++|++||.++||++.++|+++|++|+||+|+||+|||+++++|+++|+ ..++++.+++.+|
T Consensus       261 ~~mv~~~P~iL~~s~e~l~~k~~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~PR~~~~~~l~~~g~-~~~~sl~~~l~~s  339 (345)
T PF02536_consen  261 AKMVRRFPQILSYSIEKLKPKFEFLVKEMGLPLEEIVEFPQYLSYSLEKRIKPRYEVLKVLKSKGL-IINPSLSSMLSCS  339 (345)
T ss_dssp             HHHHHHSGGGGGS-HHHHHHHHHHHHHCCT--HHHHHHSCHHHCS-HHHHHHHHHHHHHTT--TTT-GGGGGS-HHHHHH
T ss_pred             HHHHHhCcchhhcchhhhhHHHHHHHHHhCcCHHHHhhCCceeEechhhhhhhHHHHHHHHHHCcC-CCCCCHHHHhhcc
Confidence            999999999999999999999999999999999999999999999999999999999999999997 6689999999999


Q ss_pred             hhhHHH
Q 043018          252 KPVFER  257 (300)
Q Consensus       252 ~~~F~~  257 (300)
                      |++|++
T Consensus       340 ~~~F~~  345 (345)
T PF02536_consen  340 DEEFLK  345 (345)
T ss_dssp             HHHHT-
T ss_pred             HHHhcC
Confidence            999974

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=9.8e-40  Score=313.18  Aligned_cols=255  Identities=18%  Similarity=0.347  Sum_probs=197.4

Q ss_pred             CCCceecCcCCChhHHHHHHHhCCCCCCchhHHHhhcCccccccccCcchhhhhHhhhhccCChhHHHHHHhCCcccccc
Q 043018            1 NPTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCN   80 (300)
Q Consensus         1 ~P~lL~~~~~~~l~~~l~~L~~lG~s~~~i~~ii~~~P~lL~~s~e~~l~p~v~fL~~~g~~~~~v~~il~~~P~iL~~s   80 (300)
                      +|++|++++++++.|+++||+++|++.++|+++|.++|.+|.+++++++.|+++||+++|++++++++++.++|++|+++
T Consensus       112 ~P~iL~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~  191 (487)
T PLN03196        112 YPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFK  191 (487)
T ss_pred             CcHHhhcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhcCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhHHHHHHhcCCChHHHHHHhhhCCcceeechh-hHHHHHHHHHHhCCCCCChh--HHHHHHHHhhccHHHHHHH
Q 043018           81 IEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRD-LFKTMMDVIKKIGIEPTNFM--FILAVRSMSVLSKATWEKK  157 (300)
Q Consensus        81 ~e~~l~~~v~~L~~lGl~~~~i~~ll~~~P~ll~~~~~-~l~~~v~~L~~lG~~~~~~~--~~~~~~~l~~~~~~~l~~k  157 (300)
                      +++++.|+++||+++|++.++|++++.++|++|+.+.+ +++++++||+++|++.+...  +...|+++....+++++++
T Consensus       192 ~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il~~~P~iL~~sle~~lkp~  271 (487)
T PLN03196        192 LEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPN  271 (487)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEcCHHHhHHHH
Confidence            99999999999999999999999999999999999986 68999999999999887532  2223333333223344444


Q ss_pred             HHHHHh-------------------------------------CCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHHHh
Q 043018          158 KDALMS-------------------------------------FSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEI  200 (300)
Q Consensus       158 v~~l~~-------------------------------------lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~  200 (300)
                      ++++++                                     +|++.+++..++.++|+++++|.+++++|++||.+ +
T Consensus       272 v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il~lSe~kl~~kvefL~~-~  350 (487)
T PLN03196        272 VECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRNVALKHVEFLRG-R  350 (487)
T ss_pred             HHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhhcccHHHHHHHHHHHHH-c
Confidence            444444                                     55555555555556666666666666777777765 7


Q ss_pred             CCChhhh----hhCCcccccCccccchhhHHHHHHHHHCCCCcCC-CCchhhcccCh-hhHHHHh
Q 043018          201 GLKPLDI----VRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKKD-IDFIQALIVTK-PVFERRF  259 (300)
Q Consensus       201 g~~~~~i----~~~P~ll~~sle~ri~pR~~~l~~L~~~Gl~~~~-~~l~~~l~~s~-~~F~~~~  259 (300)
                      ||+.++|    .++|++|++|. +.|+|++.++..  ..|+..+. ...+.++++|= ++-..||
T Consensus       351 Gls~edI~~mv~k~P~lL~~S~-~~l~~k~dFlvn--eMg~~~~~Iv~fP~~LsySLEkRI~PR~  412 (487)
T PLN03196        351 GFSAQDVAKMVVRCPQILALNL-EIMKPSLEFFKK--EMKRPLKELVEFPAYFTYGLESRIKPRY  412 (487)
T ss_pred             CCCHHHHHHHHHhCCceeeccH-HHHHHHHHHHHH--HhCCCHHHHHhChHHhccChhhhhHHHH
Confidence            7777766    47777777777 357776655441  23543322 34566677663 3544444

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=99.96  E-value=5.6e-30  Score=237.67  Aligned_cols=237  Identities=20%  Similarity=0.387  Sum_probs=176.3

Q ss_pred             HHHHhCCCCCCchhHHHhhcCccccccccCcchhhhhHhhhhccCChhHHHHHHhCCcccccchhhhhhhHHHHHHhcCC
Q 043018           18 DYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGV   97 (300)
Q Consensus        18 ~~L~~lG~s~~~i~~ii~~~P~lL~~s~e~~l~p~v~fL~~~g~~~~~v~~il~~~P~iL~~s~e~~l~~~v~~L~~lGl   97 (300)
                      ++|++.|++++||.+++.++|.++.++.++++.|+++||.++|++..++++++.++|.+|..++++++.|.++||+++|+
T Consensus         2 ~~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~   81 (345)
T PF02536_consen    2 DLLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGL   81 (345)
T ss_dssp             HHHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS
T ss_pred             hHHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcC
Confidence            58999999999999999999999999999999999999999999999999999999999999998999999999999999


Q ss_pred             ChHHHHHHhhhCCcceeechh-hHHHHHHHHHHhCCCCCCh-hH-----------------------------------H
Q 043018           98 PEHLIAKLIMINPSSLIKRRD-LFKTMMDVIKKIGIEPTNF-MF-----------------------------------I  140 (300)
Q Consensus        98 ~~~~i~~ll~~~P~ll~~~~~-~l~~~v~~L~~lG~~~~~~-~~-----------------------------------~  140 (300)
                      +++++.+++.++|++|+.+.+ .+.+++.+|.++|++++.. ..                                   .
T Consensus        82 s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~~~~~~~v~~l~~lG~~~~~~~~vi~  161 (345)
T PF02536_consen   82 SDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSSEKIKERVEFLKELGFDPEKIGRVIA  161 (345)
T ss_dssp             -HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS-HHHHCHHHHHCCCTSSHHHHCCCHH
T ss_pred             CHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccchhHHHHHHHHHHHhCCCchhhccccc
Confidence            999999999999999987654 7999999999999986521 00                                   1


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHhCCCCHHHHHHHHHcCCcccccchhh--------------------------------
Q 043018          141 LAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKK--------------------------------  188 (300)
Q Consensus       141 ~~~~~l~~~~~~~l~~kv~~l~~lG~s~~~i~~m~~~~P~iL~~S~~~--------------------------------  188 (300)
                      ..|..+...++++|+++++||+++|++.+++.+++.++|.++.+|.++                                
T Consensus       162 ~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~~~~~  241 (345)
T PF02536_consen  162 KNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQILSLSEE  241 (345)
T ss_dssp             HHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC---------------------------THHHH
T ss_pred             ccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceecccccccccccccccccccccccccccccccccccchH
Confidence            122345556677889999999999999999999999999999888764                                


Q ss_pred             -HHHHHHHHHHHhCCChhhh----hhCCcccccCccccchhhHHHHHHHHHCCCCcCC-CCchhhcccChh-hHHHH
Q 043018          189 -IRELMDFFVNEIGLKPLDI----VRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKKD-IDFIQALIVTKP-VFERR  258 (300)
Q Consensus       189 -l~~ki~fl~~~~g~~~~~i----~~~P~ll~~sle~ri~pR~~~l~~L~~~Gl~~~~-~~l~~~l~~s~~-~F~~~  258 (300)
                       ++++++||.+ +|++.++|    .++|++|++|.++ ++|++.++.  .+.|+...+ ...+.++++|=+ +-..|
T Consensus       242 ~l~~~i~~L~~-lG~s~~ei~~mv~~~P~iL~~s~e~-l~~k~~fl~--~~m~~~~~~i~~~P~~l~~sLe~ri~PR  314 (345)
T PF02536_consen  242 KLKPKIEFLQS-LGFSEEEIAKMVRRFPQILSYSIEK-LKPKFEFLV--KEMGLPLEEIVEFPQYLSYSLEKRIKPR  314 (345)
T ss_dssp             HHHHHHHHHHT-TT--HHHHHHHHHHSGGGGGS-HHH-HHHHHHHHH--HCCT--HHHHHHSCHHHCS-HHHHHHHH
T ss_pred             hHHHHHHHHHH-hcCcHHHHHHHHHhCcchhhcchhh-hhHHHHHHH--HHhCcCHHHHhhCCceeEechhhhhhhH
Confidence             7888888877 89998876    4789999999886 888766553  135665333 345677777764 34444

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.91  E-value=9.5e-24  Score=200.40  Aligned_cols=210  Identities=20%  Similarity=0.261  Sum_probs=181.5

Q ss_pred             HHHHHHhCCCCCCchhHHHhhcCccccccccCcchhhhhHhhhhccCChhHHHHHHhCCcccccchhhhhhhHHHHHHhc
Q 043018           16 KIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAH   95 (300)
Q Consensus        16 ~l~~L~~lG~s~~~i~~ii~~~P~lL~~s~e~~l~p~v~fL~~~g~~~~~v~~il~~~P~iL~~s~e~~l~~~v~~L~~l   95 (300)
                      .+++++++|....++...+..+|.......  .+...+.++...|+.+..  +++.++|.+++++.++++++++++|+++
T Consensus       201 ~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~--~l~~~~~~i~~~g~~p~~--~~~v~~~~~~~~~~~~~i~~kv~~l~~~  276 (413)
T KOG1267|consen  201 RLDIRRELGVKPRLLKSLLESQPRPVLLYL--KLKARLPFLLTLGFDPKT--REFVKAPILLSYSSEKTLEPKVEVLKSL  276 (413)
T ss_pred             cchhhHHhCCCHHHHHHHHhcCccceeeeh--hhhhhhhhHHHhccCCch--hHHHhhhhhhcccccccHHHHHHHHHHc
Confidence            677777777777777777777777665542  466667777777765555  7778888889888999999999999999


Q ss_pred             CCChHHHHHHhhhCCcceeechhhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccHHHHHHHHHHHHhCCCCHHHHHHHH
Q 043018           96 GVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAF  175 (300)
Q Consensus        96 Gl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L~~lG~~~~~~~~~~~~~~l~~~~~~~l~~kv~~l~~lG~s~~~i~~m~  175 (300)
                      |++.++|..++.++|++|+.+.+++..+++++.+.  .++    +...|.++..++..+.++++|+..+|++..|+..|+
T Consensus       277 Gf~~~di~~~~~k~P~~l~~s~~~~~~~~~~~~~~--~~~----~~k~p~~l~~s~~~l~~~ie~l~~~g~~~~q~~~~~  350 (413)
T KOG1267|consen  277 GFSREEIWKMVKKCPQILGYSVKKNLKTTEYLLKN--PKH----ILKFPQLLRSSEDKLKPRIEFLLSLGFSDVQILEMV  350 (413)
T ss_pred             CCCHHHHHHHHHhCchheEeehhhhhHHHHHHHhc--chh----hhhhhhhhhccchhhhhhHHHHHHcCCcHHHHHHHH
Confidence            99999999999999999999999999999998776  222    445555558899999999999999999999999999


Q ss_pred             HcCCcccccchh-hHHHHHHHHHHHhCCChhhhhhCCcccccCccccchhhHHHHHHHHHC
Q 043018          176 KRQPMLMLSSTK-KIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSK  235 (300)
Q Consensus       176 ~~~P~iL~~S~~-~l~~ki~fl~~~~g~~~~~i~~~P~ll~~sle~ri~pR~~~l~~L~~~  235 (300)
                      +++|+++.+|.+ .++.+.+|+.+.|+++.++++.+|++++|++|+|+.||+.+...+..+
T Consensus       351 ~~~Pq~l~~s~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~y~le~ri~pr~~~~~~~~~~  411 (413)
T KOG1267|consen  351 KRFPQYLSFSLEKILKRKYEYLLKGLLRPLSALVSFPAFFGYSLEKRIRPRFNVIKKLGVK  411 (413)
T ss_pred             hhccHHhhhhHHhhhhhhHHHHHHHcCchHHHHhccchhhccchhhcchhHHHHHHHHhcc
Confidence            999999999999 699999999999999999999999999999999999999999876543

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.87  E-value=9.2e-22  Score=186.81  Aligned_cols=226  Identities=23%  Similarity=0.373  Sum_probs=191.9

Q ss_pred             CCCceecCcCCChhHHHHHHHhCCCCCCchhHHHhhcCccccccccCcchhhhhHhhhhc--cCChhHHHHHHhCCcccc
Q 043018            1 NPTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLV--QTNVNLVHAVKQSSRIIN   78 (300)
Q Consensus         1 ~P~lL~~~~~~~l~~~l~~L~~lG~s~~~i~~ii~~~P~lL~~s~e~~l~p~v~fL~~~g--~~~~~v~~il~~~P~iL~   78 (300)
                      +|.+|.+++++.+.|++.+|.+.|++.+.++++++..|.+|..+.+.++.+.++|+.+++  .....+.+.+...|....
T Consensus       115 ~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~~~~il~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~~~~~~  194 (413)
T KOG1267|consen  115 SPKLLYLSSENILKPKLRLLDSLGLPSSELSSIVSVVPKILLKSKGESLSTFIEFLKSIPPELLSSVVERLLTPVPSFLL  194 (413)
T ss_pred             CchhhhccchhhhhhhhhhhhccCccccccchhhhccHHHHHhhcCCchhhHHHHhhccchhhhhhHHHHhccccccccc
Confidence            488999999999999999999999999999999999999988888889999999999985  555566666655553332


Q ss_pred             cchhhhhhhHHHHHHhcCCChHHHHHHhhhCCcceeechhhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccHHHHHHHH
Q 043018           79 CNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKK  158 (300)
Q Consensus        79 ~s~e~~l~~~v~~L~~lGl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L~~lG~~~~~~~~~~~~~~l~~~~~~~l~~kv  158 (300)
                      ..  ..++ ++++++++|....++..++..+|+.+.... .+...+.++..+|+++.+.+++.++..+.+++++++++++
T Consensus       195 ~~--~~v~-~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~-~l~~~~~~i~~~g~~p~~~~~v~~~~~~~~~~~~~i~~kv  270 (413)
T KOG1267|consen  195 NE--NSVE-RLDIRRELGVKPRLLKSLLESQPRPVLLYL-KLKARLPFLLTLGFDPKTREFVKAPILLSYSSEKTLEPKV  270 (413)
T ss_pred             cc--cccc-cchhhHHhCCCHHHHHHHHhcCccceeeeh-hhhhhhhhHHHhccCCchhHHHhhhhhhcccccccHHHHH
Confidence            22  2355 999999999999999999999999987755 7889999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHHHhCCChhhhhhCCcccccCccccchhhHHHHHHHHHCCCC
Q 043018          159 DALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLL  238 (300)
Q Consensus       159 ~~l~~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~g~~~~~i~~~P~ll~~sle~ri~pR~~~l~~L~~~Gl~  238 (300)
                      ++|+++||+.+||+.|+.++|++|++|.+++..+++|+.+.    .+++.++|+++.++.. .+.||+.++.   ..|+.
T Consensus       271 ~~l~~~Gf~~~di~~~~~k~P~~l~~s~~~~~~~~~~~~~~----~~~~~k~p~~l~~s~~-~l~~~ie~l~---~~g~~  342 (413)
T KOG1267|consen  271 EVLKSLGFSREEIWKMVKKCPQILGYSVKKNLKTTEYLLKN----PKHILKFPQLLRSSED-KLKPRIEFLL---SLGFS  342 (413)
T ss_pred             HHHHHcCCCHHHHHHHHHhCchheEeehhhhhHHHHHHHhc----chhhhhhhhhhhccch-hhhhhHHHHH---HcCCc
Confidence            99999999999999999999999999999988888888886    3448888888866654 6888876554   55543

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=97.47  E-value=0.0001  Score=42.67  Aligned_cols=30  Identities=27%  Similarity=0.516  Sum_probs=26.3

Q ss_pred             HHHHcCCcccccchhhHHHHHHHHHHHhCCC
Q 043018          173 LAFKRQPMLMLSSTKKIRELMDFFVNEIGLK  203 (300)
Q Consensus       173 ~m~~~~P~iL~~S~~~l~~ki~fl~~~~g~~  203 (300)
                      .++.++|+++++|.++++++++||. ++|++
T Consensus         2 ~~~~~~P~il~~~~~~l~~~~~~l~-~~g~~   31 (31)
T smart00733        2 KILKKFPQILGYSEKKLKPKVEFLK-ELGFS   31 (31)
T ss_pred             chhhhCcCcccccHHHhhHHHHHHH-HcCCC
Confidence            4688999999999888999999998 68874

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=97.38  E-value=0.00014  Score=42.08  Aligned_cols=30  Identities=30%  Similarity=0.540  Sum_probs=18.5

Q ss_pred             HHHHhCCcccccchhhhhhhHHHHHHhcCCC
Q 043018           68 HAVKQSSRIINCNIEKRLAPNVNTLRAHGVP   98 (300)
Q Consensus        68 ~il~~~P~iL~~s~e~~l~~~v~~L~~lGl~   98 (300)
                      +++.++|.+|+++ +++++++++||+++|++
T Consensus         2 ~~~~~~P~il~~~-~~~l~~~~~~l~~~g~~   31 (31)
T smart00733        2 KILKKFPQILGYS-EKKLKPKVEFLKELGFS   31 (31)
T ss_pred             chhhhCcCccccc-HHHhhHHHHHHHHcCCC
Confidence            3556666666666 44566666666666653

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=93.98  E-value=1  Score=41.79  Aligned_cols=195  Identities=16%  Similarity=0.258  Sum_probs=102.9

Q ss_pred             hCCCCCCchhHHHhhcCccccccc-cC------cchhhhhHhhh--hcc---CChhHHHHHHhCCcccccchhhhh-hhH
Q 043018           22 SVGISGADLPKFLCSNKQLLVVSL-KS------NIIPIFEFLKG--LVQ---TNVNLVHAVKQSSRIINCNIEKRL-APN   88 (300)
Q Consensus        22 ~lG~s~~~i~~ii~~~P~lL~~s~-e~------~l~p~v~fL~~--~g~---~~~~v~~il~~~P~iL~~s~e~~l-~~~   88 (300)
                      .+|++...+.+++.++|.++.... ..      .+.|...-|..  ..+   ...+++.-+.+   +|-++.+++| -.+
T Consensus        46 ~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT~~a~~L~~eE~~~~~~~e~~~v~rL~K---LLMMS~~~rlpL~k  122 (335)
T PF11955_consen   46 QLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLTPEAEDLLREERRVREEMEPDLVERLRK---LLMMSKDRRLPLSK  122 (335)
T ss_pred             hcCCCcccHHHHHHhCCceEEEeccCCCCCceEEeCHHHHHHHHHHHHHHHhChHHHHHHHHH---HhccCCCCcccHHH
Confidence            589977899999999999887643 11      23333332221  111   22334444444   6766666544 345


Q ss_pred             HHHHH-hcCCChHHHHHHhhhCCcceeech-h---hHHHHHHHHHHhCCCCC------------------ChhHHHHHHH
Q 043018           89 VNTLR-AHGVPEHLIAKLIMINPSSLIKRR-D---LFKTMMDVIKKIGIEPT------------------NFMFILAVRS  145 (300)
Q Consensus        89 v~~L~-~lGl~~~~i~~ll~~~P~ll~~~~-~---~l~~~v~~L~~lG~~~~------------------~~~~~~~~~~  145 (300)
                      ++.++ ++|++.+-...++.++|..|.... +   ..-+.+.|=.++.++.-                  ...|...++.
T Consensus       123 i~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~~LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~  202 (335)
T PF11955_consen  123 IAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGRYLELVSWDPELAVSALEKRAEKEYREKREDGFDRPLAFPVSFPK  202 (335)
T ss_pred             HHHHHHHcCCChhhccchhhhCCCCcEEeecCCCCCEEEEeecCCccCcCccchhhhhccccccccccCCceeeeecCCC
Confidence            66666 899999999999999999986422 0   01111111111111110                  0111111110


Q ss_pred             HhhccHHHHHHHHHHHHhC----------CCC---HHHHHHHHHcCCcccccchhh--HHHHHHHHHHHhCCChh---hh
Q 043018          146 MSVLSKATWEKKKDALMSF----------SWS---EDEFYLAFKRQPMLMLSSTKK--IRELMDFFVNEIGLKPL---DI  207 (300)
Q Consensus       146 l~~~~~~~l~~kv~~l~~l----------G~s---~~~i~~m~~~~P~iL~~S~~~--l~~ki~fl~~~~g~~~~---~i  207 (300)
                       .........++++-++++          |+.   .+.=...+.-.=-+|++.+++  ...++.-|.+++|+|..   -+
T Consensus       203 -G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp~k~~~~l  281 (335)
T PF11955_consen  203 -GFRLKKKFREWLEEFQKLPYISPYEDASHLDPGSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLPQKFRRLL  281 (335)
T ss_pred             -CccccHHHHHHHHHHhcCCCCCCCCCccCCCCCChHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCcHHHHHHH
Confidence             001123445555555544          111   111111222222456666665  66788888888888863   35


Q ss_pred             hhCCcccccCccc
Q 043018          208 VRCPNLLLISLKK  220 (300)
Q Consensus       208 ~~~P~ll~~sle~  220 (300)
                      +++|.+|..|...
T Consensus       282 ~rHPgIFYvS~kg  294 (335)
T PF11955_consen  282 LRHPGIFYVSLKG  294 (335)
T ss_pred             HhCCCeEEEeccC
Confidence            7888888888653

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=91.42  E-value=1.1  Score=37.32  Aligned_cols=115  Identities=13%  Similarity=0.067  Sum_probs=57.0

Q ss_pred             hhhhHhhhhccCChhHHHHHHhCCcccccchhhhhhhHHHHHHh----cCCChHHHHHHhhhCCcceeechhhHHHHHHH
Q 043018           51 PIFEFLKGLVQTNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRA----HGVPEHLIAKLIMINPSSLIKRRDLFKTMMDV  126 (300)
Q Consensus        51 p~v~fL~~~g~~~~~v~~il~~~P~iL~~s~e~~l~~~v~~L~~----lGl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~  126 (300)
                      ..+..|+++|++-++|..++.....    +....+...++.+.+    +--....+..++...+..-....-.....++.
T Consensus        49 ~~I~~lr~~G~sL~eI~~ll~~~~~----~~~~~L~~~~~~l~~ei~~L~~~~~~l~~ll~~~~~~~~~~~V~~~~w~~l  124 (172)
T cd04790          49 EQICAYRSAGVSLEDIRSLLQQPGD----DATDVLRRRLAELNREIQRLRQQQRAIATLLKQPTLLKEQRLVTKEKWVAI  124 (172)
T ss_pred             HHHHHHHHcCCCHHHHHHHHhcCCh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCHHHHHHH
Confidence            4556678888888888877765432    111122223222221    22223334444432222211111123556666


Q ss_pred             HHHhCCCCCChhHHHHHHHHhhccHHHHHHHHHHHHhCCCCHHHHHHH
Q 043018          127 IKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLA  174 (300)
Q Consensus       127 L~~lG~~~~~~~~~~~~~~l~~~~~~~l~~kv~~l~~lG~s~~~i~~m  174 (300)
                      ++.+|+++++-  ..-...|-.   ..=....+||.++|++.+++..+
T Consensus       125 ~~~~g~~~~~m--~~wh~~fe~---~~p~~h~~~l~~~g~~~~~~~~i  167 (172)
T cd04790         125 LKAAGMDEADM--RRWHIEFEK---MEPEAHQEFLQSLGIPEDEIERI  167 (172)
T ss_pred             HHHcCCChHHH--HHHHHHHHH---hCcHHHHHHHHHcCCCHHHHHHH
Confidence            67778776641  111111111   12245678999999999998754

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=83.36  E-value=2  Score=35.85  Aligned_cols=113  Identities=17%  Similarity=0.210  Sum_probs=62.2

Q ss_pred             HHHHHHHhCCCCCCchhHHHhhcCc----cccccccCcchhhhhHhhhhccCChhHHHHHHhCCcccccchhhhhhhHHH
Q 043018           15 PKIDYFESVGISGADLPKFLCSNKQ----LLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCNIEKRLAPNVN   90 (300)
Q Consensus        15 ~~l~~L~~lG~s~~~i~~ii~~~P~----lL~~s~e~~l~p~v~fL~~~g~~~~~v~~il~~~P~iL~~s~e~~l~~~v~   90 (300)
                      ..|..|+++|++-++|..++.....    ++....+ .|...++-|+.   ....+..++...+..-....- +....++
T Consensus        49 ~~I~~lr~~G~sL~eI~~ll~~~~~~~~~~L~~~~~-~l~~ei~~L~~---~~~~l~~ll~~~~~~~~~~~V-~~~~w~~  123 (172)
T cd04790          49 EQICAYRSAGVSLEDIRSLLQQPGDDATDVLRRRLA-ELNREIQRLRQ---QQRAIATLLKQPTLLKEQRLV-TKEKWVA  123 (172)
T ss_pred             HHHHHHHHcCCCHHHHHHHHhcCChhHHHHHHHHHH-HHHHHHHHHHH---HHHHHHHHHHHHhhccccccC-CHHHHHH
Confidence            4577788999999999999875542    1111111 22222222222   123344444333332111111 2456778


Q ss_pred             HHHhcCCChHHHHHHhhhCCcceeechhhH--HHHHHHHHHhCCCCCChhHH
Q 043018           91 TLRAHGVPEHLIAKLIMINPSSLIKRRDLF--KTMMDVIKKIGIEPTNFMFI  140 (300)
Q Consensus        91 ~L~~lGl~~~~i~~ll~~~P~ll~~~~~~l--~~~v~~L~~lG~~~~~~~~~  140 (300)
                      .++..|+++.++.+.=..+        ++.  ..-.+||..+|++++.+.-+
T Consensus       124 l~~~~g~~~~~m~~wh~~f--------e~~~p~~h~~~l~~~g~~~~~~~~i  167 (172)
T cd04790         124 ILKAAGMDEADMRRWHIEF--------EKMEPEAHQEFLQSLGIPEDEIERI  167 (172)
T ss_pred             HHHHcCCChHHHHHHHHHH--------HHhCcHHHHHHHHHcCCCHHHHHHH
Confidence            8888999988865432211        111  34578999999988765443

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes

Probab=82.04  E-value=2.3  Score=34.08  Aligned_cols=30  Identities=30%  Similarity=0.138  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHcCCccc
Q 043018          153 TWEKKKDALMSFSWSEDEFYLAFKRQPMLM  182 (300)
Q Consensus       153 ~l~~kv~~l~~lG~s~~~i~~m~~~~P~iL  182 (300)
                      .+..|++||++-|++.+||..++.+.+.--
T Consensus        22 p~~~k~~FL~sKGLt~~EI~~al~~a~~~~   51 (136)
T PF04695_consen   22 PLEKKIAFLESKGLTEEEIDEALGRAGSPP   51 (136)
T ss_dssp             -HHHHHHHHHHCT--HHHHHHHHHHHT--S
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHhcCCcc
Confidence            488999999999999999999999887755

Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	300
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	6e-41
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	1e-11
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	2e-07
3mva_O	343	Transcription termination factor, mitochondrial; a	2e-24
3mva_O	343	Transcription termination factor, mitochondrial; a	3e-06
3mva_O	343	Transcription termination factor, mitochondrial; a	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  142 bits (359), Expect = 6e-41
 Identities = 42/261 (16%), Positives = 98/261 (37%), Gaps = 8/261 (3%)

Query: 15  PKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSS 74
             +     +G+  + + K   +   LL +  + +I  +  FLK +   +  L   + ++ 
Sbjct: 7   ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNH 66

Query: 75  RIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIKK---IG 131
            I + ++E  L   V  L +    +  +A+++   P  L    +     +   +K   + 
Sbjct: 67  AIFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELS 125

Query: 132 IEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRE 191
           ++ T  + +   R ++   +   E  K   +   +  +E      R P ++ ++  K+ E
Sbjct: 126 VKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTE 185

Query: 192 LMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKKDIDFI---QAL 248
             DF  N + +    IV+ P +    L  +V  R   L  L          ++I   + +
Sbjct: 186 TFDFVHNVMSIPHHIIVKFPQVFNTRL-FKVKERHLFLTYLGRAQYDPAKPNYISLDKLV 244

Query: 249 IVTKPVFERRFVTSYMDDSEV 269
            +   +F      + + D E 
Sbjct: 245 SIPDEIFCEEIAKASVQDFEK 265

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 62.9 bits (153), Expect = 1e-11
 Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 2/135 (1%)

Query: 1   NPTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLV 60
           N  +   D E  L+ ++ Y  S   S AD+ + +     LL  S++     +  F K L 
Sbjct: 65  NHAIFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELE 123

Query: 61  QTNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLF 120
            +       V +  R++  ++E             G   + I  +I   P  L   +   
Sbjct: 124 LSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKL 183

Query: 121 KTMMD-VIKKIGIEP 134
               D V   + I  
Sbjct: 184 TETFDFVHNVMSIPH 198

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 33/156 (21%), Positives = 60/156 (38%), Gaps = 12/156 (7%)

Query: 86  APNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVI---KKIGIEPTNFMFILA 142
           +  +  L   GV    I K        L  R D  K +  ++   K +GIE       L 
Sbjct: 6   SETLQKLVLLGVDLSKIEKHPEAANLLL--RLDFEKDIKQMLLFLKDVGIEDNQLGAFL- 62

Query: 143 VRSMSVLSKA--TWEKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEI 200
            ++ ++ S+     + +   L S ++S+ +     ++ P L+  S +++   + FF  E+
Sbjct: 63  TKNHAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKEL 122

Query: 201 GLKPLD----IVRCPNLLLISLKKRVLPRWSVLQVL 232
            L        +VR P LL  SL+            L
Sbjct: 123 ELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLEL 158

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  100 bits (249), Expect = 2e-24
 Identities = 46/273 (16%), Positives = 104/273 (38%), Gaps = 22/273 (8%)

Query: 1   NPTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQ-LLVVSLKSNIIPIFEFLKGL 59
            P  +   PE  L  + D +  +  S  ++   L  + +     +   N+    +FL  +
Sbjct: 75  YPRAITRTPEN-LSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSV 133

Query: 60  VQTNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGV------PEHLIAKLIMINPSSL 113
             T   L   +  + R  + +++      V  L+A G+      P   + K+I  NP  L
Sbjct: 134 GLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFIL 192

Query: 114 IKRRDLFKTMMDVIKKIGIEPTNFMFILAVRSMSVL-------SKATWEKKKDALMSFSW 166
           I+     K  ++ ++      +  + +L     + +       ++ ++   K+ L S   
Sbjct: 193 IQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGC 252

Query: 167 SEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRW 226
           +E+E        P ++  + KK  + +D  + E  +    I+  P +L  S+   +  R 
Sbjct: 253 TEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEE-NISISQIIENPRVLDSSI-STLKSR- 309

Query: 227 SVLQVLMSKNLLKKDIDFIQALIVTKPVFERRF 259
             ++ L++       +  I  L  +K  +E + 
Sbjct: 310 --IKELVNAGCNLSTL-NITLLSWSKKRYEAKL 339

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 35/202 (17%), Positives = 67/202 (33%), Gaps = 16/202 (7%)

Query: 42  VVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHL 101
             +  S  +   + LK L+   V++  A K+   + +  I          L + G  + +
Sbjct: 9   CHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITN-EQDLKMFLLSKGASKEV 67

Query: 102 IAKLIMINPSSLIKRRDLFKTMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKK--- 158
           IA +I   P ++ +  +      D+ +KI       + IL     S          +   
Sbjct: 68  IASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNI 127

Query: 159 DALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLD----------IV 208
             L S   +           P    +S    +++++F     GL              I 
Sbjct: 128 KFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQ-AAGLSLGHNDPADFVRKIIF 186

Query: 209 RCPNLLLISLKKRVLPRWSVLQ 230
           + P +L+ S  KRV      L+
Sbjct: 187 KNPFILIQST-KRVKANIEFLR 207

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 30/197 (15%), Positives = 61/197 (30%), Gaps = 22/197 (11%)

Query: 1   NPTLLLADPEKSLRPKIDYFESVGISG------ADLPKFLCSNKQLLVVSLKSNIIPIFE 54
            P       +   +  +++ ++ G+S         + K +  N  +L+ S K  +    E
Sbjct: 147 APRTFSNSLDL-NKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTK-RVKANIE 204

Query: 55  FL-KGLVQTNVNLVHAVKQSSRII----NCNIEKRLAPNVNTLRAHGVPEHLIAKLIMIN 109
           FL       +  L+  +      I    N    +  A     L + G  E  + K ++  
Sbjct: 205 FLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSY 264

Query: 110 PSSLIKRRDLFKTMMDVIKKIGIEP---TNFMFILAVRS------MSVLSKATWEKKKDA 160
           P  +      F   +D + +  I          +L          +  L  A        
Sbjct: 265 PDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLKSRIKELVNAGCNLSTLN 324

Query: 161 LMSFSWSEDEFYLAFKR 177
           +   SWS+  +    K+
Sbjct: 325 ITLLSWSKKRYEAKLKK 341

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 4e-06
 Identities = 47/327 (14%), Positives = 97/327 (29%), Gaps = 92/327 (28%)

Query: 11  KSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSN--IIPIFEF----LK-GLVQTN 63
             LRP        G+ G        S K  + + +  +  +    +F    L      + 
Sbjct: 145 LELRPA-KNVLIDGVLG--------SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 64  VNLVHAVKQSSRIINCNIEKRLAPNVNT-LRAHGVPEHLIAKLIMIN--PSSLIKRRDL- 119
             ++  +++    I+ N   R   + N  LR H +   L  +L+      + L+   ++ 
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL-RRLLKSKPYENCLLVLLNVQ 254

Query: 120 -------F----KTMM--------DVI-----KKIGIEPTNFMFILAVRSMSVLSKATWE 155
                  F    K ++        D +       I ++  +          S+L K    
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDC 313

Query: 156 KKKD-----------ALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKP 204
           + +D            L   + S  +    +     +   +  K+  +++  +N   L+P
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV---NCDKLTTIIESSLNV--LEP 368

Query: 205 LDIVRC-------PNLLLISLKKRVLPR-WS---------VLQVLMSKNLLKKD------ 241
            +  +        P    I     +L   W          V+  L   +L++K       
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTI--LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426

Query: 242 -IDFIQALIVTK----PVFERRFVTSY 263
            I  I   +  K        R  V  Y
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHY 453

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	300
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	99.97
4fp9_B	335	Mterf domain-containing protein 2; modification en	99.89
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.32
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	98.48
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	87.87
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	87.61
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	87.17
2w84_A	70	Peroxisomal membrane protein PEX14; zellweger synd	80.49

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=1.5e-49  Score=355.91  Aligned_cols=251  Identities=15%  Similarity=0.229  Sum_probs=233.3

Q ss_pred             hHHHHHHHhCCCCCCchhHHHhhcCccccccccCcchhhhhHhhhhccCChhHHHHHHhCCcccccchhhhhhhHHHHHH
Q 043018           14 RPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCNIEKRLAPNVNTLR   93 (300)
Q Consensus        14 ~~~l~~L~~lG~s~~~i~~ii~~~P~lL~~s~e~~l~p~v~fL~~~g~~~~~v~~il~~~P~iL~~s~e~~l~~~v~~L~   93 (300)
                      .++++||.++|++.++|.+....+|.+|++++++++.|+++||.++|++++++++++.++|.+|++++++ ++|+++||+
T Consensus         6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~   84 (270)
T 3m66_A            6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH   84 (270)
T ss_dssp             HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence            5899999999999999988888888889999999999999999999999999999999999999999998 999999999


Q ss_pred             hcCCChHHHHHHhhhCCcceeechhhHHHHHHHH-HHhCCCCCChh-HHHHHHHHhhccHHHHHHHHHHH-HhCCCCHHH
Q 043018           94 AHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVI-KKIGIEPTNFM-FILAVRSMSVLSKATWEKKKDAL-MSFSWSEDE  170 (300)
Q Consensus        94 ~lGl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L-~~lG~~~~~~~-~~~~~~~l~~~~~~~l~~kv~~l-~~lG~s~~~  170 (300)
                      ++|++.++|.+++.++|++|+.+.++++++++|| +++|++.++.. .+...|.+++.+.++++++++++ +++||+.+|
T Consensus        85 ~~Gls~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e~~~~~v~~l~~~~G~s~~e  164 (270)
T 3m66_A           85 SKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNE  164 (270)
T ss_dssp             HTTCCHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSHHHHHHHHHHHHTSCCCHHH
T ss_pred             HcCCCHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechHHHHHHHHHHHHHcCCCHHH
Confidence            9999999999999999999999999999999999 58999987643 33334555677888999999987 599999999


Q ss_pred             HHHHHHcCCcccccchhhHHHHHHHHHHHhCCChhhhhhCCcccccCccccchhhHHHHHHHHHCCCCcCC---CCchhh
Q 043018          171 FYLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKKD---IDFIQA  247 (300)
Q Consensus       171 i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~g~~~~~i~~~P~ll~~sle~ri~pR~~~l~~L~~~Gl~~~~---~~l~~~  247 (300)
                      |..|+.++|+++++|.++|++|++|+.++||++.++|+++|++|+||+| ||+|||.++++|.++|+.+++   +++.++
T Consensus       165 i~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~~~  243 (270)
T 3m66_A          165 IQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKL  243 (270)
T ss_dssp             HHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHHHH
T ss_pred             HHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCCCHHHH
Confidence            9999999999999999999999999999999999999999999999999 999999999999999998654   677789


Q ss_pred             cccChhhHHHHhcccCcCh
Q 043018          248 LIVTKPVFERRFVTSYMDD  266 (300)
Q Consensus       248 l~~s~~~F~~~~v~~~~~~  266 (300)
                      +.+||++|+++|++.++|+
T Consensus       244 l~~sd~~F~~~~~~~~~ee  262 (270)
T 3m66_A          244 VSIPDEIFCEEIAKASVQD  262 (270)
T ss_dssp             HHSCHHHHHHHTTCSCHHH
T ss_pred             hcCCHHHHHHHHhcCCHHH
Confidence            9999999999999999976

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=2.7e-46  Score=345.44  Aligned_cols=251  Identities=16%  Similarity=0.245  Sum_probs=207.0

Q ss_pred             CCCceecCcCCChhHHHHHHHhCCCCCCchhHHHhhcCccccccccCcchhhhhHhhhhccCChhHHHHHHhCCc-cccc
Q 043018            1 NPTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSR-IINC   79 (300)
Q Consensus         1 ~P~lL~~~~~~~l~~~l~~L~~lG~s~~~i~~ii~~~P~lL~~s~e~~l~p~v~fL~~~g~~~~~v~~il~~~P~-iL~~   79 (300)
                      +|+++..+++ +..++++||+++|++++||++++.++|.+|+++.+ ++.|+++||+++|+++++++++|.++|+ ++++
T Consensus        40 ~p~l~~~s~~-~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s  117 (343)
T 3mva_O           40 QPGVFHRMIT-NEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLWRKIVTSDLEIVNILERSPESFFRS  117 (343)
T ss_dssp             CGGGGGCSCC-CHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHHHTTTSSCHHHHHHHHHHCSHHHHSC
T ss_pred             CchhhccCcc-cHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHHHHHcCCCHHHHHHHHHHCCHHHhCC
Confidence            4788888886 58999999999999999999999999999998854 8999999999999999999999999999 5555


Q ss_pred             chhhhhhhHHHHHHhcCCChHHHHHHhhhCCcceeechhhHHHHHHHHHHhCCCCCC---h----hHHHHHHHH------
Q 043018           80 NIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIKKIGIEPTN---F----MFILAVRSM------  146 (300)
Q Consensus        80 s~e~~l~~~v~~L~~lGl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L~~lG~~~~~---~----~~~~~~~~l------  146 (300)
                      +.+++++|+++||+++|++.++|++++.++|++|+.+.+++++++++++++|++.+.   .    .++...|.+      
T Consensus       118 ~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s~~  197 (343)
T 3mva_O          118 NNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTK  197 (343)
T ss_dssp             CCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSCHH
T ss_pred             ChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHhhHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCCHH
Confidence            544579999999999999999999999999999999888778888888877764221   0    111111112      


Q ss_pred             -------------------------------hhccHHHHHHHHHHHH----hCCCCHHHHHHHHHcCCcccccchhhHHH
Q 043018          147 -------------------------------SVLSKATWEKKKDALM----SFSWSEDEFYLAFKRQPMLMLSSTKKIRE  191 (300)
Q Consensus       147 -------------------------------~~~~~~~l~~kv~~l~----~lG~s~~~i~~m~~~~P~iL~~S~~~l~~  191 (300)
                                                     ...+.+.|+++++++.    ++||+.+|+..|+.++|+++++|.++|++
T Consensus       198 ~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~~~l~~  277 (343)
T 3mva_O          198 RVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFND  277 (343)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccHHHHHH
Confidence                                           2233344555554443    58999999999999999999999999999


Q ss_pred             HHHHHHHHhCCChhhhhhCCcccccCccccchhhHHHHHHHHHCCCCcCCCCch--hhcccChhhHHHHhcc
Q 043018          192 LMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKKDIDFI--QALIVTKPVFERRFVT  261 (300)
Q Consensus       192 ki~fl~~~~g~~~~~i~~~P~ll~~sle~ri~pR~~~l~~L~~~Gl~~~~~~l~--~~l~~s~~~F~~~~v~  261 (300)
                      |++||.+ ||++.++|+++|++|+||+| ||+|||.   +|.+.|+   ++++.  ++|++||++|+++|.+
T Consensus       278 k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~---~L~~~g~---~~~~~~~~~l~~s~~~F~~~~~~  341 (343)
T 3mva_O          278 KIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIK---ELVNAGC---NLSTLNITLLSWSKKRYEAKLKK  341 (343)
T ss_dssp             HHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHH---HHHTTTC---CSSSSCGGGGGSCHHHHHHHHHH
T ss_pred             HHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHH---HHHHCCC---CCCCCcchhhcCCHHHHHHHHhc
Confidence            9999999 99999999999999999999 9999995   5569998   45555  8999999999999864

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=100.00  E-value=1.4e-38  Score=290.61  Aligned_cols=213  Identities=15%  Similarity=0.199  Sum_probs=184.6

Q ss_pred             hhHHHHHHHhCCCCCCchhHHHhhcCccccccccCcchhhhhHhhhhccCChhHHHHHHhCCcccccchhhhhhhHHHHH
Q 043018           13 LRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCNIEKRLAPNVNTL   92 (300)
Q Consensus        13 l~~~l~~L~~lG~s~~~i~~ii~~~P~lL~~s~e~~l~p~v~fL~~~g~~~~~v~~il~~~P~iL~~s~e~~l~~~v~~L   92 (300)
                      ++..+.+|.++|++.++|+++++++|.++..    ++.+++.||.++|+++++|.++|.++|++|++++++ ++++++||
T Consensus        46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~-L~~~l~fL  120 (335)
T 4fp9_B           46 LERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQ-MRKRSSYL  120 (335)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHH-HHHHHHHH
Confidence            6677888999999999999999999988754    577889999999999999999999999999999864 99999999


Q ss_pred             HhcCCChHHHHHHhhhCCcceeechhhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccHHHHHHHHHHHH-hCCCCHHHH
Q 043018           93 RAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALM-SFSWSEDEF  171 (300)
Q Consensus        93 ~~lGl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L~~lG~~~~~~~~~~~~~~l~~~~~~~l~~kv~~l~-~lG~s~~~i  171 (300)
                      +++|++..+|.+++.++|++|+.+.                                  +.+..++.+|. ++||+.+||
T Consensus       121 ~~lGl~~~~i~~ll~~~P~lL~~s~----------------------------------e~i~~~v~~L~~~lGfS~~ev  166 (335)
T 4fp9_B          121 QKLGLGEGKLKRVLYCCPEIFTMRQ----------------------------------QDINDTVRLLKEKCLFTVQQV  166 (335)
T ss_dssp             HHTTCTTTTHHHHHHHCGGGGTSCH----------------------------------HHHHHHHHHHHHTSCCCHHHH
T ss_pred             HHcCCCHHHHHHHHHhCchhhccCh----------------------------------HHHHHHHHHHHHHcCCCHHHH
Confidence            9999999999999999998886644                                  45566667775 899999999


Q ss_pred             HHHHHcCCcccccchhhHHHHHHHHHHHhCCChhhhhhCCcccccCccccchhhHHHHHHHHHCCC-------CcCCCCc
Q 043018          172 YLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNL-------LKKDIDF  244 (300)
Q Consensus       172 ~~m~~~~P~iL~~S~~~l~~ki~fl~~~~g~~~~~i~~~P~ll~~sle~ri~pR~~~l~~L~~~Gl-------~~~~~~l  244 (300)
                      ..|+.++|+||++|.++|++|++||+++||+++++|++ |++|+||++ ||+|||.+++.|.....       ...++++
T Consensus       167 ~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL  244 (335)
T 4fp9_B          167 TKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLL  244 (335)
T ss_dssp             HHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCH
T ss_pred             HHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccH
Confidence            99999999999999999999999999999999999998 999999998 99999998885533211       1235679


Q ss_pred             hhhcccChhhHHHHhcccCcCh
Q 043018          245 IQALIVTKPVFERRFVTSYMDD  266 (300)
Q Consensus       245 ~~~l~~s~~~F~~~~v~~~~~~  266 (300)
                      .+++..|+++|+.+++..+.++
T Consensus       245 ~~il~~sd~~F~~~vA~~s~ee  266 (335)
T 4fp9_B          245 KDILRVSEAEFLARTACTSVEE  266 (335)
T ss_dssp             HHHTTSCHHHHHHHTSCCCHHH
T ss_pred             HHHHcCCHHHHHHHHHhcCHHH
Confidence            9999999999999999998877

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=1.1e-33  Score=252.81  Aligned_cols=191  Identities=18%  Similarity=0.270  Sum_probs=176.1

Q ss_pred             CCceecCcCCChhHHHHHHHhCCCCCCchhHHHhhcCccccccccCcchhhhhHhhhhccCChhHHHHHHhCCcccccch
Q 043018            2 PTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCNI   81 (300)
Q Consensus         2 P~lL~~~~~~~l~~~l~~L~~lG~s~~~i~~ii~~~P~lL~~s~e~~l~p~v~fL~~~g~~~~~v~~il~~~P~iL~~s~   81 (300)
                      |.+|++++++++.|+++||.++|++.++|+++++++|.+|++++++ +.|+++||+++|++++++++++.++|++|++++
T Consensus        30 p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~  108 (270)
T 3m66_A           30 NLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSV  108 (270)
T ss_dssp             HHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCH
T ss_pred             hhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCH
Confidence            5669999999999999999999999999999999999999999996 999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHH-HhcCCChHHHHHHhhhCCcceeechhhHHHHHHHH-HHhCCCCCChh-HHHHHHHHhhccHHHHHHHH
Q 043018           82 EKRLAPNVNTL-RAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVI-KKIGIEPTNFM-FILAVRSMSVLSKATWEKKK  158 (300)
Q Consensus        82 e~~l~~~v~~L-~~lGl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L-~~lG~~~~~~~-~~~~~~~l~~~~~~~l~~kv  158 (300)
                      ++ ++|+++|| +++|++.+++.+++.++|++++.+.++++++++++ +++|++.++.. ++...|.+...+.+++++++
T Consensus       109 ~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~  187 (270)
T 3m66_A          109 ER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETF  187 (270)
T ss_dssp             HH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHH
Confidence            85 99999999 58999999999999999999999999999999976 78999987642 33444455677889999999


Q ss_pred             HHHH-hCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHH
Q 043018          159 DALM-SFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVN  198 (300)
Q Consensus       159 ~~l~-~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~  198 (300)
                      +|+. ++|++.++|.    ++|++|++|.++|++++.|+..
T Consensus       188 ~fL~~~mg~~~~~i~----~~P~~l~~Sleri~pR~~~l~~  224 (270)
T 3m66_A          188 DFVHNVMSIPHHIIV----KFPQVFNTRLFKVKERHLFLTY  224 (270)
T ss_dssp             HHHHTTSCCCHHHHH----HCGGGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHH----hCchHhhCCHHHHHHHHHHHHH
Confidence            9997 7999999876    9999999999999999999976

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=99.97  E-value=1.6e-30  Score=239.93  Aligned_cols=189  Identities=12%  Similarity=0.147  Sum_probs=153.2

Q ss_pred             hhHHHHHHHhCCCCCCchhHHHhhcCccccccccCcchhhhhHhhhhccCChhHHHHHHhCCcccccchhhhhhhHHHHH
Q 043018           13 LRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCNIEKRLAPNVNTL   92 (300)
Q Consensus        13 l~~~l~~L~~lG~s~~~i~~ii~~~P~lL~~s~e~~l~p~v~fL~~~g~~~~~v~~il~~~P~iL~~s~e~~l~~~v~~L   92 (300)
                      -..+++||.++|++   +.+++.++|.++..+.+ +..+.++||+++|++++++++++.++|.+|+++++ ++.|+++||
T Consensus        19 ~~~~v~~L~s~Gl~---~~~~~~~~p~l~~~s~~-~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~fL   93 (343)
T 3mva_O           19 NEDLLKNLLTMGVD---IDMARKRQPGVFHRMIT-NEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLW   93 (343)
T ss_dssp             -CCHHHHHHHHTCC---HHHHHHHCGGGGGCSCC-CHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHHH
T ss_pred             cHHHHHHHHHcCCC---HHHHHHhCchhhccCcc-cHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHHH
Confidence            36789999999998   66778899999998876 78999999999999999999999999999999975 699999999


Q ss_pred             HhcCCChHHHHHHhhhCCc-ceeechh-hHHHHHHHHHHhCCCCCChh-HHHHHHHHhhccHHHHHHHHHHHHhCCCC--
Q 043018           93 RAHGVPEHLIAKLIMINPS-SLIKRRD-LFKTMMDVIKKIGIEPTNFM-FILAVRSMSVLSKATWEKKKDALMSFSWS--  167 (300)
Q Consensus        93 ~~lGl~~~~i~~ll~~~P~-ll~~~~~-~l~~~v~~L~~lG~~~~~~~-~~~~~~~l~~~~~~~l~~kv~~l~~lG~s--  167 (300)
                      +++|++.+++.+++.++|+ +++...+ +++++++||+++|++.+... ++...|.+.+.+.+..++++++++++|++  
T Consensus        94 ~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~~~~v~~L~~lgv~~g  173 (343)
T 3mva_O           94 RKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLG  173 (343)
T ss_dssp             TTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHhhHHHHHHHHhCCCcC
Confidence            9999999999999999999 5666654 89999999999999987542 22223334455666668888888755443  


Q ss_pred             ----HHHHHHHHHcCCcccccchhhHHHHHHHHHHHhCCChhh
Q 043018          168 ----EDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLD  206 (300)
Q Consensus       168 ----~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~g~~~~~  206 (300)
                          .+.|.+++.++|.++++|.++++++++|+.+++|++.++
T Consensus       174 ~~~p~~~I~~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~  216 (343)
T 3mva_O          174 HNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEE  216 (343)
T ss_dssp             CSCHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHH
T ss_pred             CCcHHHHHHHHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHH
Confidence                667888888888888888667888888877645555444

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=99.89  E-value=2.9e-23  Score=189.42  Aligned_cols=156  Identities=16%  Similarity=0.157  Sum_probs=141.1

Q ss_pred             CCCceecCcCCChhHHHHHHHhCCCCCCchhHHHhhcCccccccccCcchhhhhHhhhhccCChhHHHHHHhCCcccccc
Q 043018            1 NPTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCN   80 (300)
Q Consensus         1 ~P~lL~~~~~~~l~~~l~~L~~lG~s~~~i~~ii~~~P~lL~~s~e~~l~p~v~fL~~~g~~~~~v~~il~~~P~iL~~s   80 (300)
                      +|.++.    .++.+++.||.++|++.++|++||.++|++|+.+++ +|.|+++||+++|++..++.+++.++|++|+++
T Consensus        70 ~P~il~----~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~fL~~lGl~~~~i~~ll~~~P~lL~~s  144 (335)
T 4fp9_B           70 RRGASL----QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMR  144 (335)
T ss_dssp             CSSCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHHHHHTTCTTTTHHHHHHHCGGGGTSC
T ss_pred             Ccccch----hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHHHHHcCCCHHHHHHHHHhCchhhccC
Confidence            466653    358899999999999999999999999999999997 799999999999999999999999999999999


Q ss_pred             hhhhhhhHHHHHH-hcCCChHHHHHHhhhCCcceeechhhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccHHHHHHHHH
Q 043018           81 IEKRLAPNVNTLR-AHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKD  159 (300)
Q Consensus        81 ~e~~l~~~v~~L~-~lGl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L~~lG~~~~~~~~~~~~~~l~~~~~~~l~~kv~  159 (300)
                      .++ +..++.+|. ++|++.++|.+++.++|++|+.                                  +.+++++|++
T Consensus       145 ~e~-i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~----------------------------------S~e~L~~K~e  189 (335)
T 4fp9_B          145 QQD-INDTVRLLKEKCLFTVQQVTKILHSCPSVLRE----------------------------------DLGQLEYKFQ  189 (335)
T ss_dssp             HHH-HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTS----------------------------------CHHHHHHHHH
T ss_pred             hHH-HHHHHHHHHHHcCCCHHHHHHHHHhCChhhhC----------------------------------CHHHHHHHHH
Confidence            885 888989885 7999999999999999998855                                  4567888899


Q ss_pred             HHH-hCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHHHhCC
Q 043018          160 ALM-SFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIGL  202 (300)
Q Consensus       160 ~l~-~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~g~  202 (300)
                      ||. ++|++.++|.    + |++|+||.+.|++++.||.. .|.
T Consensus       190 fLv~~Mgl~~~eIv----k-P~~l~ySLeRIkpRH~fL~~-lG~  227 (335)
T 4fp9_B          190 YAYFRMGIKHPDIV----K-SEYLQYSLTKIKQRHIYLER-LGR  227 (335)
T ss_dssp             HHHTTTCCCHHHHH----H-TTGGGSCHHHHHHHHHHHHH-HTS
T ss_pred             HHHHHhCCCHHHcc----c-cchhhccHHHHHHHHHHHHH-cCC
Confidence            988 8999999986    3 99999999999999999977 776

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.32  E-value=6.1e-11  Score=93.50  Aligned_cols=182  Identities=15%  Similarity=0.191  Sum_probs=135.9

Q ss_pred             cchhhhhHhhhhccCChhHHHHHHhCCcccccchhhhhhhHHHHHHhcCCChHHHHHHhhhCCcceeechhhHHHHHHHH
Q 043018           48 NIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVI  127 (300)
Q Consensus        48 ~l~p~v~fL~~~g~~~~~v~~il~~~P~iL~~s~e~~l~~~v~~L~~lGl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L  127 (300)
                      ++...+.-+.-+|+.++-+.-++.+.|.+|...+- .++.+-.+|+.+|+.+..+.+++..+|.++++..          
T Consensus        32 qlldiisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrq----------  100 (239)
T 4fzv_B           32 QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQ----------  100 (239)
T ss_dssp             TTTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCH----------
T ss_pred             HHHHHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHH----------
Confidence            34444444455666777777777777777776665 3666777777777777777777777776665543          


Q ss_pred             HHhCCCCCChhHHHHHHHHhhccHHHHHHHHHHHH-hCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHHHhCCChhh
Q 043018          128 KKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALM-SFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLD  206 (300)
Q Consensus       128 ~~lG~~~~~~~~~~~~~~l~~~~~~~l~~kv~~l~-~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~g~~~~~  206 (300)
                                              ..+...+..++ ++-|+..++.+++..||.++.-....+.-|+.|-.-.||+...+
T Consensus       101 ------------------------qdindtvrllkekclftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpd  156 (239)
T 4fzv_B          101 ------------------------QDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPD  156 (239)
T ss_dssp             ------------------------HHHHHHHHHHHHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHH
T ss_pred             ------------------------hhHhHHHHHHHHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcc
Confidence                                    34555566666 67799999999999999999999999999999988889999999


Q ss_pred             hhhCCcccccCccccchhhHHHHHHHHHCCCCc-------CCCCchhhcccChhhHHHHhcccCcCh
Q 043018          207 IVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLK-------KDIDFIQALIVTKPVFERRFVTSYMDD  266 (300)
Q Consensus       207 i~~~P~ll~~sle~ri~pR~~~l~~L~~~Gl~~-------~~~~l~~~l~~s~~~F~~~~v~~~~~~  266 (300)
                      |++. .++.||+. .|+.||-+++-|..-+-..       .++-+.+++..|+..|+.+-.-..-|+
T Consensus       157 ivks-eylqyslt-kikqrhiylerlgryqtpdkkgqtqipnpllkdilrvseaeflartactsvee  221 (239)
T 4fzv_B          157 IVKS-EYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEE  221 (239)
T ss_dssp             HHHT-TGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSCCCCHHHHHTSCHHHHHHHTSCSCHHH
T ss_pred             hhHH-HHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCCChHHHHHHHHhHHHHHHHHhcccHHH
Confidence            9985 89999997 5999999988664322111       245577899999999999887665544

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=98.48  E-value=2.4e-06  Score=67.33  Aligned_cols=148  Identities=16%  Similarity=0.150  Sum_probs=121.9

Q ss_pred             hhHHHHHHHhCCCCCCchhHHHhhcCccccccccCcchhhhhHhhhhccCChhHHHHHHhCCcccccchhhhhhhHHHHH
Q 043018           13 LRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCNIEKRLAPNVNTL   92 (300)
Q Consensus        13 l~~~l~~L~~lG~s~~~i~~ii~~~P~lL~~s~e~~l~p~v~fL~~~g~~~~~v~~il~~~P~iL~~s~e~~l~~~v~~L   92 (300)
                      +-..+.-|--+|++++-++-++.+.|++|..++- ++..+-.||+.+|+....+.+++..+|.|+++.-. .+..++..|
T Consensus        33 lldiisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrqq-dindtvrll  110 (239)
T 4fzv_B           33 LLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLL  110 (239)
T ss_dssp             TTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHH-HHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHHh-hHhHHHHHH
Confidence            4444555566899999999999999999998875 78888999999999999999999999999999965 599999999


Q ss_pred             Hh-cCCChHHHHHHhhhCCcceeechhhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccHHHHHHHHHHHH-hCCCCHHH
Q 043018           93 RA-HGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALM-SFSWSEDE  170 (300)
Q Consensus        93 ~~-lGl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L~~lG~~~~~~~~~~~~~~l~~~~~~~l~~kv~~l~-~lG~s~~~  170 (300)
                      ++ +-++..++.+++-.+|+++.-..                                  ..++-|+.|-- .+|+.+-+
T Consensus       111 kekclftvqqvtkilhscpsvlredl----------------------------------gqleykfqyayfrmgikhpd  156 (239)
T 4fzv_B          111 KEKCLFTVQQVTKILHSCPSVLREDL----------------------------------GQLEYKFQYAYFRMGIKHPD  156 (239)
T ss_dssp             HHHSCCCHHHHHHHHHHCGGGGTSCT----------------------------------THHHHHHHHHHHTSCCCHHH
T ss_pred             HHhHHhhHHHHHHHHHhCcHHHHHHH----------------------------------hhhhhhHhHHHHHccCCCcc
Confidence            96 78899999999999999874432                                  13555666655 78888877


Q ss_pred             HHHHHHcCCcccccchhhHHHHHHHHHHHhCC
Q 043018          171 FYLAFKRQPMLMLSSTKKIRELMDFFVNEIGL  202 (300)
Q Consensus       171 i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~g~  202 (300)
                      |.+     ...+.+|..+|+.+.-|+.. +|.
T Consensus       157 ivk-----seylqysltkikqrhiyler-lgr  182 (239)
T 4fzv_B          157 IVK-----SEYLQYSLTKIKQRHIYLER-LGR  182 (239)
T ss_dssp             HHH-----TTGGGSCHHHHHHHHHHHHH-HTC
T ss_pred             hhH-----HHHHHHHHHHHHHHHhHHHH-hcc
Confidence            762     35689999999999999865 664

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=87.87  E-value=1.2  Score=28.69  Aligned_cols=35  Identities=17%  Similarity=0.211  Sum_probs=25.5

Q ss_pred             HHhCCcccccchhhhhhhHHHHHHhcCCChHHHHHHhhh
Q 043018           70 VKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMI  108 (300)
Q Consensus        70 l~~~P~iL~~s~e~~l~~~v~~L~~lGl~~~~i~~ll~~  108 (300)
                      +..+|.+-..+++    .+++||++-|++.++|...+.+
T Consensus        19 FL~dp~V~~sp~~----~K~~FL~sKGLt~~EI~~Al~r   53 (54)
T 3ff5_A           19 FLQNSRVRQSPLA----TRRAFLKKKGLTDEEIDLAFQQ   53 (54)
T ss_dssp             HHHCTTGGGSCHH----HHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HhCChhhhcCCHH----HHHHHHHHcCCCHHHHHHHHHc
Confidence            4456777666644    4788888888888888877754

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=87.61  E-value=1.8  Score=32.76  Aligned_cols=99  Identities=10%  Similarity=0.131  Sum_probs=60.5

Q ss_pred             hhHHHHHHhcCCChHHHHHHhhhCCcceeechhhHHHHHHHHH------HhCCCCCChhHHHHHHHHhhccH---HHHHH
Q 043018           86 APNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIK------KIGIEPTNFMFILAVRSMSVLSK---ATWEK  156 (300)
Q Consensus        86 ~~~v~~L~~lGl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L~------~lG~~~~~~~~~~~~~~l~~~~~---~~l~~  156 (300)
                      +..++.|.+.|++...+.+.+...-      . ..+..++||.      +.|++....  -.++. ....+.   ....+
T Consensus         9 ~~~v~~l~~MGFp~~~~~kAl~~~g------~-~~e~amewL~~h~~L~d~~~d~~~~--e~~l~-~~~~~~~~~~~~~~   78 (118)
T 4ae4_A            9 RQCVETVVNMGYSYECVLRAMKAAG------A-NIEQILDYLFAHGQLCEKGFDPLLV--EEALE-MHQCSEEKMMEFLQ   78 (118)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHC------S-CHHHHHHHHHHHHHHHHTTCCHHHH--HHHHH-HCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHC------c-CHHHHHHHHHHhchhcccCCChhhh--HHHHH-hccCCccccccCHH
Confidence            4578888999999999998886532      1 4666677763      334433211  01111 111111   12346


Q ss_pred             HHHHHHhCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHHHhC
Q 043018          157 KKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIG  201 (300)
Q Consensus       157 kv~~l~~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~g  201 (300)
                      .+.-|.++||+.+++.+.++.+-       ..+.+-+++|....|
T Consensus        79 ~v~~L~eMGF~~~~a~~AL~~~~-------nd~erAlewL~~~~~  116 (118)
T 4ae4_A           79 LMSKFKEMGFELKDIKEVLLLHN-------NDQDNALEDLMARAG  116 (118)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHTT-------TCHHHHHHHHHHHC-
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHHhcc
Confidence            78888899999999997777543       346677777776544

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=87.17  E-value=1.1  Score=28.88  Aligned_cols=26  Identities=19%  Similarity=0.344  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHcC
Q 043018          153 TWEKKKDALMSFSWSEDEFYLAFKRQ  178 (300)
Q Consensus       153 ~l~~kv~~l~~lG~s~~~i~~m~~~~  178 (300)
                      .+..|++||++-|++.+||..++.+.
T Consensus        29 p~~~K~~FL~sKGLt~~EI~~Al~rs   54 (54)
T 3ff5_A           29 PLATRRAFLKKKGLTDEEIDLAFQQS   54 (54)
T ss_dssp             CHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence            47899999999999999999988763

>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A

Probab=80.49  E-value=2  Score=29.10  Aligned_cols=36  Identities=17%  Similarity=0.220  Sum_probs=26.2

Q ss_pred             HHhCCcccccchhhhhhhHHHHHHhcCCChHHHHHHhhhC
Q 043018           70 VKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMIN  109 (300)
Q Consensus        70 l~~~P~iL~~s~e~~l~~~v~~L~~lGl~~~~i~~ll~~~  109 (300)
                      +..+|.+-...++    .+++||++-|++.++|...+.+.
T Consensus        24 FLqdp~V~~sp~~----~K~~FL~sKGLt~eEI~~Al~ra   59 (70)
T 2w84_A           24 FLQNSRVRQSPLA----TRRAFLKKKGLTDEEIDMAFQQS   59 (70)
T ss_dssp             HHCSTTGGGSCHH----HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HhCChhhhhCCHH----HHHHHHHHcCCCHHHHHHHHHHc
Confidence            3456777666644    47888888888888888877653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00