Citrus Sinensis ID: 043034

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
Protein Sequence
MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETCLLIQVSFK
Secondary Structure (PSIPRED)
cHHHHHHccccccccEEEEEEEEcccccEEEEccHHHHHHHcccccccccEEEEEcccccccccccccccccccccccEEEEcccHHHHHHHHHHHHHHccEEcHHHHHHHHHHHHHHccccccccEEEEEcccccccHHHHccccccccccccccccccccEEEccccccccccHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccccccEEEEEcccccccEEEEEEccHHHHHHHHHHHHcccccEEEccccccccccccccccccHHHccEEEEEcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHccccEEEEEcEHHHcccHEHHHcccccccccccHHHHHHHEEEcEcHHHHcccHHHHccccHHHHccccccccc
Coil and Loop (DISEMBL)
mikdaedkglitpgkSILIEITSSNTGIGLAFISAVRIAAVRGyksyhcptrhlhhSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKvakipendrILIVVSLISYKLYFSFCInslvnqspcpfcslheachqfllpsggerylsteLFDSITHEAETCLLIQVSFK
Flexible Loop (DISEMBL)
mikdaedkglitpgKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIkvakipendrILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETCLLIQVSFK
Low Complexity Region (SEG)
MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGissdaaaaasikvakiPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETCLLIQVSFK
Disordered region (IsUnstruct)
**********ITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETCLLIQV***
Disordered Region (DISOPRED)
MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVV***VVMGKHLIQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETCLLIQ****
Disordered Region (DISEMBL)
MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETCLLIQVSFK
Disordered Region (DISPRO)
MIK*AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETCLLIQV***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETCLLIQVSFK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	197	2.2.26 [Sep-21-2011]
F4K5T2	323	Bifunctional cystathionin	no	no	0.512	0.312	0.428	4e-14
Q43725	430	Cysteine synthase, mitoch	no	no	0.507	0.232	0.404	4e-12
Q00834	325	Cysteine synthase OS=Spin	N/A	no	0.527	0.32	0.4	5e-12
P47999	392	Cysteine synthase, chloro	no	no	0.426	0.214	0.462	2e-11
O81154	325	Cysteine synthase OS=Sola	N/A	no	0.568	0.344	0.385	2e-11
P80608	325	Cysteine synthase OS=Zea	N/A	no	0.578	0.350	0.374	3e-11
Q9S757	368	Bifunctional L-3-cyanoala	no	no	0.467	0.25	0.357	4e-11
O81155	386	Cysteine synthase, chloro	N/A	no	0.507	0.259	0.363	5e-11
Q1KLZ2	376	L-3-cyanoalanine synthase	N/A	no	0.502	0.263	0.330	1e-10
P32260	383	Cysteine synthase, chloro	N/A	no	0.512	0.263	0.367	2e-10

>sp|F4K5T2|CGL_ARATH Bifunctional cystathionine gamma-lyase/cysteine synthase OS=Arabidopsis thaliana GN=DES1 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/147 (42%), Positives = 74/147 (50%), Gaps = 46/147 (31%)

Query: 54  LHHSEYVVLSHVVMGKHLIQA------------SCHEYCFQVSSEEAIETAQQLAHKEGL 101
           +  SE  VLS    G HLIQ             S  +   QV+ EEAIET + LA KEGL
Sbjct: 207 VEPSESAVLSGGKPGPHLIQGIGSGEIPANLDLSIVDEIIQVTGEEAIETTKLLAIKEGL 266

Query: 102 LVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEAC 161
           LVGISS A+AAA++KVAK PEN   LIVV                               
Sbjct: 267 LVGISSGASAAAALKVAKRPENVGKLIVV------------------------------- 295

Query: 162 HQFLLPSGGERYLSTELFDSITHEAET 188
              + PSGGERYLSTELF+S+ +EAE 
Sbjct: 296 ---IFPSGGERYLSTELFESVRYEAEN 319

Involved in maintaining Cys homeostasis through the desulfuration of L-cysteine. Probably unable to interact with SAT and to form the decameric Cys synthase complex (CSC) and is therefore not an enzymatically true OASTL protein.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 4EC: .EC: 1EC: .EC: 1

>sp|Q43725|CYSKM_ARATH Cysteine synthase, mitochondrial OS=Arabidopsis thaliana GN=OASC PE=1 SV=3

 Score = 71.2 bits (173), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/146 (40%), Positives = 68/146 (46%), Gaps = 46/146 (31%)

Query: 54  LHHSEYVVLSHVVMGKHLIQA------------SCHEYCFQVSSEEAIETAQQLAHKEGL 101
           +  +E  +LS    G H IQ                +    +SSEEAIETA+QLA KEGL
Sbjct: 313 VEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGL 372

Query: 102 LVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEAC 161
           +VGISS AAAAA+IKVAK PEN   LI V                               
Sbjct: 373 MVGISSGAAAAAAIKVAKRPENAGKLIAV------------------------------- 401

Query: 162 HQFLLPSGGERYLSTELFDSITHEAE 187
              + PS GERYLST LF SI  E E
Sbjct: 402 ---VFPSFGERYLSTPLFQSIREEVE 424

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 7

>sp|Q00834|CYSK_SPIOL Cysteine synthase OS=Spinacia oleracea PE=1 SV=1

 Score = 70.9 bits (172), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/150 (40%), Positives = 72/150 (48%), Gaps = 46/150 (30%)

Query: 54  LHHSEYVVLSHVVMGKHLIQA------------SCHEYCFQVSSEEAIETAQQLAHKEGL 101
           L   E  VLS    G H IQ             +  +   Q+SSEE+IE A+ LA KEGL
Sbjct: 208 LEPVESAVLSGGKPGPHKIQGLGAGFIPGVLDVNIIDEVVQISSEESIEMAKLLALKEGL 267

Query: 102 LVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEAC 161
           LVGISS AAAAA+IKVAK PEN   LIV                                
Sbjct: 268 LVGISSGAAAAAAIKVAKRPENAGKLIVA------------------------------- 296

Query: 162 HQFLLPSGGERYLSTELFDSITHEAETCLL 191
              + PS GERYLS+ LFDS+  EAE+ ++
Sbjct: 297 ---VFPSFGERYLSSVLFDSVRKEAESMVI 323

Spinacia oleracea (taxid: 3562)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 7

>sp|P47999|CYSKP_ARATH Cysteine synthase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=OASB PE=1 SV=2

 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/119 (46%), Positives = 64/119 (53%), Gaps = 35/119 (29%)

Query: 69  KHLIQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILI 128
           K+L  A   EY   +SSEEAIET++QLA +EGLLVGISS AAAAA+I+VAK PEN   LI
Sbjct: 303 KNLDLAIVDEY-IAISSEEAIETSKQLALQEGLLVGISSGAAAAAAIQVAKRPENAGKLI 361

Query: 129 VVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAE 187
            V                                  + PS GERYLST+LF SI  E E
Sbjct: 362 AV----------------------------------VFPSFGERYLSTQLFQSIREECE 386

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 7

>sp|O81154|CYSK_SOLTU Cysteine synthase OS=Solanum tuberosum PE=2 SV=1

 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 74/161 (45%), Gaps = 49/161 (30%)

Query: 44  YKSYHCPTRHLHHSEYV---VLSHVVMGKHLIQA------------SCHEYCFQVSSEEA 88
           Y     P   L+  E V   +LS    G H IQ             +  +   QVSSEE+
Sbjct: 195 YLREQNPNVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPGVLEVNLIDDVVQVSSEES 254

Query: 89  IETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVN 148
           IE A+ LA KEGLLVGISS AAAAA+IKVAK PEN   LIVV                  
Sbjct: 255 IEMAKLLALKEGLLVGISSGAAAAAAIKVAKRPENAGKLIVV------------------ 296

Query: 149 QSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETC 189
                           + PS GERYLS+ LF+++  EAE  
Sbjct: 297 ----------------IFPSFGERYLSSVLFETVRREAENM 321

Solanum tuberosum (taxid: 4113)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 7

>sp|P80608|CYSK_MAIZE Cysteine synthase OS=Zea mays PE=1 SV=2

 Score = 68.6 bits (166), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 75/163 (46%), Gaps = 49/163 (30%)

Query: 44  YKSYHCPTRHLHHSEYV---VLSHVVMGKHLIQA------------SCHEYCFQVSSEEA 88
           Y     P   L+  E V   VL+    G H IQ                +   QVSS+EA
Sbjct: 195 YLREQNPNVKLYGVEPVESAVLNGGKPGPHKIQGIGAGFIPGVLDVDLLDETLQVSSDEA 254

Query: 89  IETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVN 148
           IETA+ LA KEGLLVGISS AAAAA++++AK PEN   L VV                  
Sbjct: 255 IETAKALALKEGLLVGISSGAAAAAAVRLAKRPENAGKLFVV------------------ 296

Query: 149 QSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETCLL 191
                           + PS GERYLS+ LF SI  EAE+ ++
Sbjct: 297 ----------------VFPSFGERYLSSVLFQSIKKEAESMVV 323

Zea mays (taxid: 4577)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 7

>sp|Q9S757|CYSC1_ARATH Bifunctional L-3-cyanoalanine synthase/cysteine synthase C1, mitochondrial OS=Arabidopsis thaliana GN=CYSC1 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 62/126 (49%), Gaps = 34/126 (26%)

Query: 70  HLIQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIV 129
            ++     E   +VSSE+AI+ A++LA KEGL+VGISS A   A+I++AK+PEN   LIV
Sbjct: 277 EILDMDVMESVLEVSSEDAIKMARELALKEGLMVGISSGANTVAAIRLAKMPENKGKLIV 336

Query: 130 VSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETC 189
                  ++ SF                            GERYLS+ LFD +  EAE  
Sbjct: 337 T------IHASF----------------------------GERYLSSVLFDELRKEAEEM 362

Query: 190 LLIQVS 195
             + V 
Sbjct: 363 KPVSVD 368

The cyanoalanine synthesis reaction is more efficient than the cysteine synthase activity. Probably involved in the detoxification of cyanide that arises from ethylene biosynthesis. Maintains a low level of cyanide for proper root hair development.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 9

>sp|O81155|CYSKP_SOLTU Cysteine synthase, chloroplastic/chromoplastic OS=Solanum tuberosum PE=2 SV=1

 Score = 67.8 bits (164), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 66/146 (45%), Gaps = 46/146 (31%)

Query: 54  LHHSEYVVLSHVVMGKHLIQA------------SCHEYCFQVSSEEAIETAQQLAHKEGL 101
           +  +E  VLS    G H IQ                +   ++SS+EA+ETA+ LA +EGL
Sbjct: 269 VEPTESNVLSGGKPGPHKIQGIGAGFIPGNLDQDVMDEVIEISSDEAVETARTLALQEGL 328

Query: 102 LVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEAC 161
           LVGISS AAA A+I+V K PEN   LI V                               
Sbjct: 329 LVGISSGAAALAAIQVGKRPENAGKLIGV------------------------------- 357

Query: 162 HQFLLPSGGERYLSTELFDSITHEAE 187
              + PS GERYLS+ LF SI  E E
Sbjct: 358 ---VFPSYGERYLSSILFQSIREECE 380

Solanum tuberosum (taxid: 4113)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 7

>sp|Q1KLZ2|CAS1_MALDO L-3-cyanoalanine synthase 1, mitochondrial OS=Malus domestica GN=CAS1 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 40/139 (28%)

Query: 64  HVVMGK------HLIQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKV 117
           H +MG        ++     E   +V+SE+A+  A+QLA KEGL+VGISS A   A++++
Sbjct: 271 HSIMGNGVGFKPDILDLDMLERVIEVTSEDAVNMARQLALKEGLMVGISSGANTVAAMEL 330

Query: 118 AKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTE 177
           AK PEN   LIV                          ++H        PS GERYLS+ 
Sbjct: 331 AKKPENKGKLIV--------------------------TVH--------PSFGERYLSSV 356

Query: 178 LFDSITHEAETCLLIQVSF 196
           LF  +  EAE    + V +
Sbjct: 357 LFQELRQEAENMQPVAVDY 375

Probably involved in the detoxification of cyanide that arises from ethylen biosynthesis in ripening fruits. Has only background level of in vitro cysteine synthase activity.

Malus domestica (taxid: 3750)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 9

>sp|P32260|CYSKP_SPIOL Cysteine synthase, chloroplastic/chromoplastic OS=Spinacia oleracea GN=CYSK PE=1 SV=2

 Score = 65.5 bits (158), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/147 (36%), Positives = 67/147 (45%), Gaps = 46/147 (31%)

Query: 54  LHHSEYVVLSHVVMGKHLIQA------------SCHEYCFQVSSEEAIETAQQLAHKEGL 101
           +  +E  +LS    G H IQ                +   +VSSEEA+E A+QLA KEGL
Sbjct: 267 IEPTESNILSGGKPGPHKIQGLGAGFVPSNLDLGVMDEVIEVSSEEAVEMAKQLAMKEGL 326

Query: 102 LVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEAC 161
           LVGISS AAAAA++++ K PEN   LI V                               
Sbjct: 327 LVGISSGAAAAAAVRIGKRPENAGKLIAV------------------------------- 355

Query: 162 HQFLLPSGGERYLSTELFDSITHEAET 188
              + PS GERYLS+ LF SI  E E 
Sbjct: 356 ---VFPSFGERYLSSILFQSIREECEN 379

Spinacia oleracea (taxid: 3562)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
449435764	323	PREDICTED: cysteine synthase-like [Cucum	0.532	0.325	0.437	3e-17
357441517	249	Cysteine synthase [Medicago truncatula]	0.507	0.401	0.410	9e-15
449518615	324	PREDICTED: cysteine synthase-like [Cucum	0.522	0.317	0.443	2e-14
388508804	323	unknown [Medicago truncatula]	0.507	0.309	0.410	2e-14
357441515	308	Cysteine synthase [Medicago truncatula]	0.507	0.324	0.410	2e-14
449435766	320	PREDICTED: LOW QUALITY PROTEIN: cysteine	0.522	0.321	0.443	3e-14
449517449	324	PREDICTED: cysteine synthase-like [Cucum	0.517	0.314	0.439	7e-14
255542382	323	cysteine synthase, putative [Ricinus com	0.512	0.312	0.401	7e-14
2245144	345	O-acetylserine(thiol) lyase [Brassica ju	0.512	0.292	0.435	9e-14
405132020	323	L-cysteine desulfhydrase [Brassica napus	0.512	0.312	0.435	1e-13

>gi|449435764|ref|XP_004135664.1| PREDICTED: cysteine synthase-like [Cucumis sativus] gi|449518617|ref|XP_004166333.1| PREDICTED: cysteine synthase-like [Cucumis sativus]

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/151 (43%), Positives = 76/151 (50%), Gaps = 46/151 (30%)

Query: 54  LHHSEYVVLSHVVMGKHLIQA------------SCHEYCFQVSSEEAIETAQQLAHKEGL 101
           +  +E  VLS    GKHLIQ               ++   QVSSEEAIETA+ LA +EGL
Sbjct: 207 VEPAESAVLSGGQPGKHLIQGIGGGFIPRVLDLKVYDEIIQVSSEEAIETAKLLALREGL 266

Query: 102 LVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEAC 161
           LVGISS A AAA IKVAK  E+   LIVV                               
Sbjct: 267 LVGISSGAIAAAGIKVAKRRESKGKLIVV------------------------------- 295

Query: 162 HQFLLPSGGERYLSTELFDSITHEAETCLLI 192
              + PSGGERYLSTELFDSI HEAE  + +
Sbjct: 296 ---IFPSGGERYLSTELFDSIRHEAENMIYV 323

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441517|ref|XP_003591036.1| Cysteine synthase [Medicago truncatula] gi|355480084|gb|AES61287.1| Cysteine synthase [Medicago truncatula]

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/146 (41%), Positives = 71/146 (48%), Gaps = 46/146 (31%)

Query: 54  LHHSEYVVLSHVVMGKHLIQA------------SCHEYCFQVSSEEAIETAQQLAHKEGL 101
           +  +E  VL+    GKHLIQ                +   QVS EEAIETA+ LA KEGL
Sbjct: 133 VEPTESAVLNGGKPGKHLIQGIGAGIVPPILEVDLLDEVIQVSGEEAIETAKLLASKEGL 192

Query: 102 LVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEAC 161
           L+GISS AA AA+IK+ K PEN   LIVV                               
Sbjct: 193 LMGISSGAATAAAIKLGKRPENAGKLIVV------------------------------- 221

Query: 162 HQFLLPSGGERYLSTELFDSITHEAE 187
              + PS GERYLS+ LF+SI HEAE
Sbjct: 222 ---IFPSFGERYLSSPLFESIRHEAE 244

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518615|ref|XP_004166332.1| PREDICTED: cysteine synthase-like [Cucumis sativus]

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 80/151 (52%), Gaps = 48/151 (31%)

Query: 54  LHHSEYVVLSHVVMGKHLIQA------------SCHEYCFQVSSEEAIETAQQLAHKEGL 101
           +  +E  VLS    GKHLIQ             + ++   Q+SSEEA+ETA+ LA KEGL
Sbjct: 208 VEPAESAVLSGEQPGKHLIQGIGAGFIPAVLDTNVYDEIIQISSEEAMETAKLLALKEGL 267

Query: 102 LVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEAC 161
           LVGISS AAAAA+IKVAK  E++  LIVV                               
Sbjct: 268 LVGISSGAAAAAAIKVAKRQESEGKLIVV------------------------------- 296

Query: 162 HQFLLPSGGERYLSTELFDSITHEAE--TCL 190
              + PS GERYLSTELFDSI HEAE  TC+
Sbjct: 297 ---IFPSSGERYLSTELFDSIRHEAENMTCV 324

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508804|gb|AFK42468.1| unknown [Medicago truncatula]

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/146 (41%), Positives = 71/146 (48%), Gaps = 46/146 (31%)

Query: 54  LHHSEYVVLSHVVMGKHLIQA------------SCHEYCFQVSSEEAIETAQQLAHKEGL 101
           +  +E  VL+    GKHLIQ                +   QVS EEAIETA+ LA KEGL
Sbjct: 207 VEPTESAVLNGGKPGKHLIQGIGAGIVPPILEVDLLDEVIQVSGEEAIETAKLLASKEGL 266

Query: 102 LVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEAC 161
           L+GISS AA AA+IK+ K PEN   LIVV                               
Sbjct: 267 LMGISSGAATAAAIKLGKRPENAGKLIVV------------------------------- 295

Query: 162 HQFLLPSGGERYLSTELFDSITHEAE 187
              + PS GERYLS+ LF+SI HEAE
Sbjct: 296 ---IFPSFGERYLSSPLFESIRHEAE 318

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441515|ref|XP_003591035.1| Cysteine synthase [Medicago truncatula] gi|355480083|gb|AES61286.1| Cysteine synthase [Medicago truncatula]

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/146 (41%), Positives = 71/146 (48%), Gaps = 46/146 (31%)

Query: 54  LHHSEYVVLSHVVMGKHLIQA------------SCHEYCFQVSSEEAIETAQQLAHKEGL 101
           +  +E  VL+    GKHLIQ                +   QVS EEAIETA+ LA KEGL
Sbjct: 192 VEPTESAVLNGGKPGKHLIQGIGAGIVPPILEVDLLDEVIQVSGEEAIETAKLLASKEGL 251

Query: 102 LVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEAC 161
           L+GISS AA AA+IK+ K PEN   LIVV                               
Sbjct: 252 LMGISSGAATAAAIKLGKRPENAGKLIVV------------------------------- 280

Query: 162 HQFLLPSGGERYLSTELFDSITHEAE 187
              + PS GERYLS+ LF+SI HEAE
Sbjct: 281 ---IFPSFGERYLSSPLFESIRHEAE 303

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435766|ref|XP_004135665.1| PREDICTED: LOW QUALITY PROTEIN: cysteine synthase-like [Cucumis sativus]

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 79/151 (52%), Gaps = 48/151 (31%)

Query: 54  LHHSEYVVLSHVVMGKHLIQA------------SCHEYCFQVSSEEAIETAQQLAHKEGL 101
           +  +E  VLS    GKHLIQ               ++   Q+SSEEA+ETA+ LA KEGL
Sbjct: 204 VEPAESAVLSGEKPGKHLIQGIGSGFIPPVLDLKVYDEIIQISSEEAMETAKLLALKEGL 263

Query: 102 LVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEAC 161
           LVGISS AAAAA+IKVAK  E++  LIVV                               
Sbjct: 264 LVGISSGAAAAAAIKVAKRQESEGKLIVV------------------------------- 292

Query: 162 HQFLLPSGGERYLSTELFDSITHEAE--TCL 190
              + PS GERYLSTELFDSI HEAE  TC+
Sbjct: 293 ---IFPSSGERYLSTELFDSIRHEAENMTCV 320

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517449|ref|XP_004165758.1| PREDICTED: cysteine synthase-like [Cucumis sativus]

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/148 (43%), Positives = 76/148 (51%), Gaps = 46/148 (31%)

Query: 54  LHHSEYVVLSHVVMGKHLIQA------------SCHEYCFQVSSEEAIETAQQLAHKEGL 101
           +  +E  VLS    GKHLIQ               ++   Q+SSEEAIETA+ LA KEGL
Sbjct: 208 VEPAESAVLSGENPGKHLIQGIGSGFIPPVLDLKVYDEIIQISSEEAIETAKLLAIKEGL 267

Query: 102 LVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEAC 161
           LVGISS AAAAA+IKVAK  E++  LIVV                               
Sbjct: 268 LVGISSGAAAAAAIKVAKRQESEGKLIVV------------------------------- 296

Query: 162 HQFLLPSGGERYLSTELFDSITHEAETC 189
              + PS GERYLST+LFDSI HEAE  
Sbjct: 297 ---VFPSSGERYLSTKLFDSIRHEAENM 321

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542382|ref|XP_002512254.1| cysteine synthase, putative [Ricinus communis] gi|223548215|gb|EEF49706.1| cysteine synthase, putative [Ricinus communis]

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/147 (40%), Positives = 71/147 (48%), Gaps = 46/147 (31%)

Query: 54  LHHSEYVVLSHVVMGKHLIQA------------SCHEYCFQVSSEEAIETAQQLAHKEGL 101
           +  +E  VL+    GKHLI                 +   QVSSEEAIETA+QLA +EGL
Sbjct: 207 VEPAESAVLNGGKPGKHLIDGLGAGIVPPLLDVDKLDQVIQVSSEEAIETAKQLASEEGL 266

Query: 102 LVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEAC 161
           LVGISS A  AA++K+AK PEN   LIVV                               
Sbjct: 267 LVGISSGAVTAAALKLAKRPENAGKLIVV------------------------------- 295

Query: 162 HQFLLPSGGERYLSTELFDSITHEAET 188
              +  S GERYLST+LF+S  HEAE 
Sbjct: 296 ---IFASAGERYLSTKLFESFRHEAEN 319

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2245144|emb|CAA71799.1| O-acetylserine(thiol) lyase [Brassica juncea]

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/147 (43%), Positives = 74/147 (50%), Gaps = 46/147 (31%)

Query: 54  LHHSEYVVLSHVVMGKHLIQA------------SCHEYCFQVSSEEAIETAQQLAHKEGL 101
           +  +E  VLS    G+HLIQ             S  +   QV+ EEAIETA+ LA KEGL
Sbjct: 229 VEPTESPVLSGGEPGRHLIQGIGAGIIPANLDLSIVDEIIQVTGEEAIETAKLLALKEGL 288

Query: 102 LVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEAC 161
           LVGISS AAAAA++KVAK PEN   LI V                               
Sbjct: 289 LVGISSGAAAAAALKVAKRPENAGKLIAV------------------------------- 317

Query: 162 HQFLLPSGGERYLSTELFDSITHEAET 188
              L PSGGERYLST+LFDS+  EAE 
Sbjct: 318 ---LFPSGGERYLSTKLFDSVRFEAEN 341

Source: Brassica juncea

Species: Brassica juncea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|405132020|gb|AFS17242.1| L-cysteine desulfhydrase [Brassica napus]

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/147 (43%), Positives = 74/147 (50%), Gaps = 46/147 (31%)

Query: 54  LHHSEYVVLSHVVMGKHLIQA------------SCHEYCFQVSSEEAIETAQQLAHKEGL 101
           +  +E  VLS    G+HLIQ             S  +   QV+ EEAIETA+ LA KEGL
Sbjct: 207 VEPTESPVLSGGEPGRHLIQGIGAGIIPANLDLSIVDEIIQVTGEEAIETAKLLALKEGL 266

Query: 102 LVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEAC 161
           LVGISS AAAAA++KVAK PEN   LI V                               
Sbjct: 267 LVGISSGAAAAAALKVAKRPENAGKLIAV------------------------------- 295

Query: 162 HQFLLPSGGERYLSTELFDSITHEAET 188
              L PSGGERYLST+LFDS+  EAE 
Sbjct: 296 ---LFPSGGERYLSTKLFDSVRFEAEN 319

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
TAIR|locus:2114804	324	CYSD1 "cysteine synthase D1" [	0.203	0.123	0.755	2.5e-27
TAIR|locus:2143754	323	DES1 "L-cysteine desulfhydrase	0.203	0.123	0.733	3.7e-26
TAIR|locus:2143814	323	CYSD2 "cysteine synthase D2" [	0.203	0.123	0.711	6.6e-26
UNIPROTKB|Q1KLZ2	376	CAS1 "L-3-cyanoalanine synthas	0.203	0.106	0.644	5.7e-19
TAIR|locus:2043964	392	OASB "O-acetylserine (thiol) l	0.203	0.102	0.711	8.8e-19
TAIR|locus:2080417	433	OASC "O-acetylserine (thiol) l	0.203	0.092	0.644	3.3e-17
UNIPROTKB|Q76MX2	351	PCAS-1 "Bifunctional L-3-cyano	0.203	0.113	0.622	6.8e-16
UNIPROTKB|Q43153	368	CYSC "Bifunctional L-3-cyanoal	0.203	0.108	0.6	1.1e-15
TAIR|locus:2130419	322	OASA1 "O-acetylserine (thiol)	0.203	0.124	0.644	4.5e-15
UNIPROTKB|Q1KLZ1	375	CAS2 "L-3-cyanoalanine synthas	0.203	0.106	0.6	5.3e-12

TAIR|locus:2114804 CYSD1 "cysteine synthase D1" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 2.5e-27, Sum P(3) = 2.5e-27
 Identities = 34/45 (75%), Positives = 35/45 (77%)

Query:     1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
             MIKDAEDKGLITPGKS LIE TS NTGIGLAFI A +     GYK
Sbjct:    56 MIKDAEDKGLITPGKSTLIEATSGNTGIGLAFIGAAK-----GYK 95

GO:0003824 "catalytic activity" evidence=IEA

GO:0004124 "cysteine synthase activity" evidence=IEA;ISS;IDA;IMP

GO:0006535 "cysteine biosynthetic process from serine" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0019344 "cysteine biosynthetic process" evidence=ISS;RCA;IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009069 "serine family amino acid metabolic process" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

TAIR|locus:2143754 DES1 "L-cysteine desulfhydrase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 3.7e-26, Sum P(3) = 3.7e-26
 Identities = 33/45 (73%), Positives = 33/45 (73%)

Query:     1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
             MIKDAEDKGLITPGKS LIE T  NTGIGLA      I A RGYK
Sbjct:    55 MIKDAEDKGLITPGKSTLIEATGGNTGIGLA-----SIGASRGYK 94

GO:0003824 "catalytic activity" evidence=IEA

GO:0004124 "cysteine synthase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006535 "cysteine biosynthetic process from serine" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0019344 "cysteine biosynthetic process" evidence=ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

TAIR|locus:2143814 CYSD2 "cysteine synthase D2" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 6.6e-26, Sum P(3) = 6.6e-26
 Identities = 32/45 (71%), Positives = 34/45 (75%)

Query:     1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
             MIKDAEDKGLITPGKS LIE T+ NTGIGLA + A R     GYK
Sbjct:    55 MIKDAEDKGLITPGKSTLIEPTAGNTGIGLACMGAAR-----GYK 94

GO:0003824 "catalytic activity" evidence=IEA

GO:0004124 "cysteine synthase activity" evidence=IEA;ISS;IMP

GO:0005739 "mitochondrion" evidence=ISM

GO:0006535 "cysteine biosynthetic process from serine" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0019344 "cysteine biosynthetic process" evidence=ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|Q1KLZ2 CAS1 "L-3-cyanoalanine synthase 1, mitochondrial" [Malus x domestica (taxid:3750)]

 Score = 131 (51.2 bits), Expect = 5.7e-19, Sum P(3) = 5.7e-19
 Identities = 29/45 (64%), Positives = 35/45 (77%)

Query:     1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
             MI DAE+KGLITPG++ILIE TS N GI +AF+     AA+RGYK
Sbjct:   103 MINDAEEKGLITPGETILIEPTSGNMGISMAFM-----AAMRGYK 142

GO:0009836 "fruit ripening, climacteric" evidence=IDA

GO:0050017 "L-3-cyanoalanine synthase activity" evidence=IDA

TAIR|locus:2043964 OASB "O-acetylserine (thiol) lyase B" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 8.8e-19, Sum P(2) = 8.8e-19
 Identities = 32/45 (71%), Positives = 36/45 (80%)

Query:     1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
             MI DAE+KGLITPGKS+L+E TS NTGIGLAFI     AA +GYK
Sbjct:   123 MITDAEEKGLITPGKSVLVESTSGNTGIGLAFI-----AASKGYK 162

GO:0003824 "catalytic activity" evidence=IEA

GO:0004124 "cysteine synthase activity" evidence=IEA;ISS;IDA

GO:0006535 "cysteine biosynthetic process from serine" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009536 "plastid" evidence=TAS

GO:0019344 "cysteine biosynthetic process" evidence=RCA;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0048046 "apoplast" evidence=IDA

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2080417 OASC "O-acetylserine (thiol) lyase isoform C" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
 Identities = 29/45 (64%), Positives = 34/45 (75%)

Query:     1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
             M+ DAE KG I+PGKS+L+E TS NTGIGLAFI     AA RGY+
Sbjct:   161 MVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFI-----AASRGYR 200

GO:0003824 "catalytic activity" evidence=IEA

GO:0004124 "cysteine synthase activity" evidence=IEA;ISS;IDA

GO:0005739 "mitochondrion" evidence=ISM;IDA;TAS

GO:0006535 "cysteine biosynthetic process from serine" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019344 "cysteine biosynthetic process" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009507 "chloroplast" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0048868 "pollen tube development" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

UNIPROTKB|Q76MX2 PCAS-1 "Bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial" [Solanum tuberosum (taxid:4113)]

 Score = 124 (48.7 bits), Expect = 6.8e-16, Sum P(3) = 6.8e-16
 Identities = 28/45 (62%), Positives = 33/45 (73%)

Query:     1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
             MI DAE KGLITPGK+ LIE TS N GI +AF+     AA++GYK
Sbjct:    80 MINDAEKKGLITPGKTTLIEPTSGNMGISMAFM-----AAMKGYK 119

GO:0004124 "cysteine synthase activity" evidence=IDA

GO:0006534 "cysteine metabolic process" evidence=IDA

GO:0019499 "cyanide metabolic process" evidence=IDA

GO:0050017 "L-3-cyanoalanine synthase activity" evidence=IDA

UNIPROTKB|Q43153 CYSC "Bifunctional L-3-cyanoalanine synthase/cysteine synthase, mitochondrial" [Spinacia oleracea (taxid:3562)]

 Score = 125 (49.1 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
 Identities = 27/45 (60%), Positives = 35/45 (77%)

Query:     1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
             MI+DAE KGLI+PGK++LIE TS N GI +AF+     AA++GYK
Sbjct:    97 MIEDAEKKGLISPGKTVLIEPTSGNMGISMAFM-----AAMKGYK 136

GO:0004124 "cysteine synthase activity" evidence=IDA

GO:0006534 "cysteine metabolic process" evidence=IDA

GO:0019499 "cyanide metabolic process" evidence=IDA

GO:0050017 "L-3-cyanoalanine synthase activity" evidence=IDA

TAIR|locus:2130419 OASA1 "O-acetylserine (thiol) lyase (OAS-TL) isoform A1" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
 Identities = 29/45 (64%), Positives = 33/45 (73%)

Query:     1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
             MI DAE KGLI PG+S+LIE TS NTG+GLAF      AA +GYK
Sbjct:    53 MISDAEKKGLIKPGESVLIEPTSGNTGVGLAFT-----AAAKGYK 92

GO:0003824 "catalytic activity" evidence=IEA

GO:0004124 "cysteine synthase activity" evidence=IEA;IGI;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006535 "cysteine biosynthetic process from serine" evidence=IEA;TAS

GO:0008152 "metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS;IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA;IMP;IDA

GO:0007568 "aging" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0019344 "cysteine biosynthetic process" evidence=RCA;IMP

GO:0048046 "apoplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

UNIPROTKB|Q1KLZ1 CAS2 "L-3-cyanoalanine synthase 2, mitochondrial" [Malus x domestica (taxid:3750)]

 Score = 123 (48.4 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
 Identities = 27/45 (60%), Positives = 34/45 (75%)

Query:     1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
             MI DAE+KGLITPG++ LIE TS N GI +AF+     AA++GYK
Sbjct:   104 MINDAEEKGLITPGETTLIEPTSGNMGISMAFM-----AAMKGYK 143

GO:0009836 "fruit ripening, climacteric" evidence=IDA

GO:0050017 "L-3-cyanoalanine synthase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	CYSD2	CYSD2 (CYSTEINE SYNTHASE D2); catalytic/ cysteine synthase/ pyridoxal phosphate binding; Encodes cysteine synthase CysD2. (323 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	ATSERAT1;1	ATSERAT1;1 (ARABIDOPSIS THALIANA SERINE ACETYLTRANSFERASE 1;1); serine O-acetyltransferase; Enc [...] (312 aa)	•				•	•	•		0.998
	ATSERAT2;1	ATSERAT2;1 (SERINE ACETYLTRANSFERASE 2;1); serine O-acetyltransferase; Encodes a chloroplast/cy [...] (314 aa)	•					•	•		0.990
	ATSERAT2;2	ATSERAT2;2 (SERINE ACETYLTRANSFERASE 2;2); serine O-acetyltransferase; Encodes a mitochondrial [...] (391 aa)	•					•	•		0.972
	SIR	SIR; sulfite reductase (ferredoxin)/ sulfite reductase; A.thaliana gene encoding sulfite reduct [...] (642 aa)	•			•		•	•		0.971
	CBL	CBL (cystathionine beta-lyase); cystathionine beta-lyase; Encodes second enzyme in the methioni [...] (464 aa)	•					•	•		0.963
	ATSERAT3;1	ATSERAT3;1; acetyltransferase/ serine O-acetyltransferase; Encodes a cytosolic serine O-acetylt [...] (323 aa)	•					•	•		0.958
	ATSERAT3;2	ATSERAT3;2 (Serine acetyltransferase 3;2); acetyltransferase/ serine O-acetyltransferase; Encod [...] (355 aa)	•					•	•		0.935
	AT1G55880	pyridoxal-5'-phosphate-dependent enzyme, beta family protein; pyridoxal-5'-phosphate-dependent [...] (421 aa)			•			•	•	•	0.916
	CYSC1	CYSC1 (CYSTEINE SYNTHASE C1); L-3-cyanoalanine synthase/ cysteine synthase; Encodes a cysteine [...] (368 aa)			•			•	•	•	0.907
	OASC	OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C); ATP binding / cysteine synthase; Arabidopsis tha [...] (433 aa)			•			•	•	•	0.905

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	197
PLN00011	323	PLN00011, PLN00011, cysteine synthase	2e-25
PLN02565	322	PLN02565, PLN02565, cysteine synthase	9e-23
TIGR01136	299	TIGR01136, cysKM, cysteine synthase	2e-19
TIGR01139	298	TIGR01139, cysK, cysteine synthase A	1e-18
PLN02556	368	PLN02556, PLN02556, cysteine synthase/L-3-cyanoala	1e-15
PLN03013	429	PLN03013, PLN03013, cysteine synthase	2e-15
PLN00011	323	PLN00011, PLN00011, cysteine synthase	3e-14
PLN02565	322	PLN02565, PLN02565, cysteine synthase	9e-14
COG0031	300	COG0031, CysK, Cysteine synthase [Amino acid trans	2e-13
cd01561	291	cd01561, CBS_like, CBS_like: This subgroup include	3e-13
cd01561	291	cd01561, CBS_like, CBS_like: This subgroup include	2e-12
TIGR01136	299	TIGR01136, cysKM, cysteine synthase	3e-12
PLN02556	368	PLN02556, PLN02556, cysteine synthase/L-3-cyanoala	7e-12
COG0031	300	COG0031, CysK, Cysteine synthase [Amino acid trans	1e-11
TIGR01139	298	TIGR01139, cysK, cysteine synthase A	2e-11
PLN03013	429	PLN03013, PLN03013, cysteine synthase	1e-10
PRK11761	296	PRK11761, cysM, cysteine synthase B; Provisional	5e-10
PRK10717	330	PRK10717, PRK10717, cysteine synthase A; Provision	9e-10
PRK11761	296	PRK11761, cysM, cysteine synthase B; Provisional	1e-08
TIGR01137	454	TIGR01137, cysta_beta, cystathionine beta-synthase	3e-08
pfam00291	295	pfam00291, PALP, Pyridoxal-phosphate dependent enz	4e-08
cd00640	244	cd00640, Trp-synth-beta_II, Tryptophan synthase be	7e-08
TIGR01138	290	TIGR01138, cysM, cysteine synthase B	2e-07
PRK10717	330	PRK10717, PRK10717, cysteine synthase A; Provision	1e-06
TIGR01138	290	TIGR01138, cysM, cysteine synthase B	6e-06
TIGR03945	304	TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate bio	6e-06
TIGR01137	454	TIGR01137, cysta_beta, cystathionine beta-synthase	7e-05
TIGR03945	304	TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate bio	8e-05
cd00640	244	cd00640, Trp-synth-beta_II, Tryptophan synthase be	0.001
COG0498	411	COG0498, ThrC, Threonine synthase [Amino acid tran	0.003
cd06446	365	cd06446, Trp-synth_B, Tryptophan synthase-beta: Tr	0.004

>gnl|CDD|177651 PLN00011, PLN00011, cysteine synthase

 Score = 99.7 bits (248), Expect = 2e-25
 Identities = 62/143 (43%), Positives = 73/143 (51%), Gaps = 46/143 (32%)

Query: 57  SEYVVLSHVVMGKHLIQA------------SCHEYCFQVSSEEAIETAQQLAHKEGLLVG 104
            E  VLS    G HLIQ             +  +   QV+ EEAIETA+ LA KEGLLVG
Sbjct: 210 VESAVLSGGQPGPHLIQGIGSGIIPFNLDLTIVDEIIQVTGEEAIETAKLLALKEGLLVG 269

Query: 105 ISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQF 164
           ISS AAAAA++KVAK PEN   LIVV                                  
Sbjct: 270 ISSGAAAAAALKVAKRPENAGKLIVV---------------------------------- 295

Query: 165 LLPSGGERYLSTELFDSITHEAE 187
           + PSGGERYLST+LF+S+ +EAE
Sbjct: 296 IFPSGGERYLSTKLFESVRYEAE 318

Length = 323

>gnl|CDD|166206 PLN02565, PLN02565, cysteine synthase

 Score = 92.7 bits (230), Expect = 9e-23
 Identities = 52/107 (48%), Positives = 60/107 (56%), Gaps = 34/107 (31%)

Query: 82  QVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSF 141
           QVSS+EAIETA+ LA KEGLLVGISS AAAAA+IK+AK PEN   LIVV           
Sbjct: 245 QVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPENAGKLIVV----------- 293

Query: 142 CINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAET 188
                                  + PS GERYLS+ LF+S+  EAE 
Sbjct: 294 -----------------------IFPSFGERYLSSVLFESVKKEAEN 317

Length = 322

>gnl|CDD|233286 TIGR01136, cysKM, cysteine synthase

 Score = 83.5 bits (207), Expect = 2e-19
 Identities = 40/99 (40%), Positives = 50/99 (50%), Gaps = 34/99 (34%)

Query: 81  FQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFS 140
             VS E+AIETA++LA +EG+LVGISS AA AA++K+AK  EN   +IV           
Sbjct: 235 ITVSDEDAIETARRLAREEGILVGISSGAAVAAALKLAKRLENADKVIVA---------- 284

Query: 141 FCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELF 179
                                   +LP  GERYLST LF
Sbjct: 285 ------------------------ILPDTGERYLSTGLF 299

This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff [Amino acid biosynthesis, Serine family]. Length = 299

>gnl|CDD|233288 TIGR01139, cysK, cysteine synthase A

 Score = 81.3 bits (201), Expect = 1e-18
 Identities = 45/99 (45%), Positives = 54/99 (54%), Gaps = 35/99 (35%)

Query: 81  FQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFS 140
             VS EEAIETA++LA +EG+LVGISS AA AA++K+AK PE D+ LIVV          
Sbjct: 235 ITVSDEEAIETARRLAAEEGILVGISSGAAVAAALKLAKRPEPDK-LIVV---------- 283

Query: 141 FCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELF 179
                                   +LPS GERYLST LF
Sbjct: 284 ------------------------ILPSTGERYLSTPLF 298

This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate [Amino acid biosynthesis, Serine family]. Length = 298

>gnl|CDD|178171 PLN02556, PLN02556, cysteine synthase/L-3-cyanoalanine synthase

 Score = 73.5 bits (180), Expect = 1e-15
 Identities = 41/110 (37%), Positives = 55/110 (50%), Gaps = 34/110 (30%)

Query: 78  EYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKL 137
           E   +VSSE+A+  A++LA KEGL+VGISS A   A++++AK+PEN   LIV        
Sbjct: 285 EKVLEVSSEDAVNMARELALKEGLMVGISSGANTVAALRLAKMPENKGKLIVT------- 337

Query: 138 YFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAE 187
                                      + PS GERYLS+ LF  +  EAE
Sbjct: 338 ---------------------------VHPSFGERYLSSVLFQELRKEAE 360

Length = 368

>gnl|CDD|178587 PLN03013, PLN03013, cysteine synthase

 Score = 72.9 bits (178), Expect = 2e-15
 Identities = 42/105 (40%), Positives = 51/105 (48%), Gaps = 35/105 (33%)

Query: 83  VSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFC 142
           +SSEEAIETA+QLA KEGL+VGISS AAAAA+IKVAK PEN   LI V            
Sbjct: 354 ISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIAV------------ 401

Query: 143 INSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAE 187
                                  L + G R + T    S++ +  
Sbjct: 402 ----------------------SLFASG-RDIYTPRCSSLSGKRW 423

Length = 429

>gnl|CDD|177651 PLN00011, PLN00011, cysteine synthase

 Score = 69.6 bits (170), Expect = 3e-14
 Identities = 33/45 (73%), Positives = 34/45 (75%), Gaps = 5/45 (11%)

Query: 1  MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          MIKDAEDKGLITPGKS LIE T+ NTGIGLA      I A RGYK
Sbjct: 55 MIKDAEDKGLITPGKSTLIEATAGNTGIGLAC-----IGAARGYK 94

Length = 323

>gnl|CDD|166206 PLN02565, PLN02565, cysteine synthase

 Score = 68.0 bits (166), Expect = 9e-14
 Identities = 30/45 (66%), Positives = 35/45 (77%), Gaps = 5/45 (11%)

Query: 1  MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          MI DAE+KGLI PG+S+LIE TS NTGIGLAF     +AA +GYK
Sbjct: 53 MITDAEEKGLIKPGESVLIEPTSGNTGIGLAF-----MAAAKGYK 92

Length = 322

>gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism]

 Score = 66.8 bits (164), Expect = 2e-13
 Identities = 36/96 (37%), Positives = 45/96 (46%), Gaps = 35/96 (36%)

Query: 81  FQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFS 140
            +VS EEAI TA++LA +EGLLVGISS AA AA++K+AK     +  IV           
Sbjct: 240 IRVSDEEAIATARRLAREEGLLVGISSGAALAAALKLAKELPAGK-TIVT---------- 288

Query: 141 FCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLST 176
                                   +LP  GERYLS 
Sbjct: 289 ------------------------ILPDSGERYLSK 300

Length = 300

>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase

 Score = 66.4 bits (163), Expect = 3e-13
 Identities = 33/95 (34%), Positives = 42/95 (44%), Gaps = 35/95 (36%)

Query: 81  FQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFS 140
            +VS EEA   A++LA +EGLLVG SS AA AA++K+AK     +  IV           
Sbjct: 232 VRVSDEEAFAMARRLAREEGLLVGGSSGAAVAAALKLAKRLGPGK-TIVT---------- 280

Query: 141 FCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLS 175
                                   +LP  GERYLS
Sbjct: 281 ------------------------ILPDSGERYLS 291

CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine. Length = 291

>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase

 Score = 63.7 bits (156), Expect = 2e-12
 Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 6/45 (13%)

Query: 1  MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          MI+DAE +GL+ PG + +IE TS NTGIGLA      +AA +GY+
Sbjct: 40 MIEDAEKRGLLKPG-TTIIEPTSGNTGIGLAM-----VAAAKGYR 78

CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine. Length = 291

>gnl|CDD|233286 TIGR01136, cysKM, cysteine synthase

 Score = 63.5 bits (155), Expect = 3e-12
 Identities = 25/45 (55%), Positives = 31/45 (68%), Gaps = 6/45 (13%)

Query: 1  MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          MI+DAE +GL+ PG +I IE TS NTGI LA      +AA +GYK
Sbjct: 45 MIEDAEKRGLLKPGDTI-IEATSGNTGIALAM-----VAAAKGYK 83

This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff [Amino acid biosynthesis, Serine family]. Length = 299

>gnl|CDD|178171 PLN02556, PLN02556, cysteine synthase/L-3-cyanoalanine synthase

 Score = 62.7 bits (152), Expect = 7e-12
 Identities = 28/45 (62%), Positives = 33/45 (73%), Gaps = 5/45 (11%)

Query: 1   MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
           MI+DAE K LITPGK+ LIE TS N GI LAF     +AA++GYK
Sbjct: 97  MIEDAEKKNLITPGKTTLIEPTSGNMGISLAF-----MAAMKGYK 136

Length = 368

>gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism]

 Score = 61.8 bits (151), Expect = 1e-11
 Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 6/45 (13%)

Query: 1  MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          MI+DAE +GL+ PG +I +E TS NTGI LA      +AA +GY+
Sbjct: 49 MIEDAEKRGLLKPGGTI-VEATSGNTGIALAM-----VAAAKGYR 87

Length = 300

>gnl|CDD|233288 TIGR01139, cysK, cysteine synthase A

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 26/45 (57%), Positives = 31/45 (68%), Gaps = 6/45 (13%)

Query: 1  MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          MI DAE +GL+ PGK+I +E TS NTGI LA      +AA RGYK
Sbjct: 44 MIWDAEKRGLLKPGKTI-VEPTSGNTGIALAM-----VAAARGYK 82

This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate [Amino acid biosynthesis, Serine family]. Length = 298

>gnl|CDD|178587 PLN03013, PLN03013, cysteine synthase

 Score = 59.0 bits (142), Expect = 1e-10
 Identities = 29/45 (64%), Positives = 34/45 (75%), Gaps = 5/45 (11%)

Query: 1   MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
           M+ DAE KG I+PGKS+L+E TS NTGIGLAF     IAA RGY+
Sbjct: 161 MVTDAEQKGFISPGKSVLVEPTSGNTGIGLAF-----IAASRGYR 200

Length = 429

>gnl|CDD|236972 PRK11761, cysM, cysteine synthase B; Provisional

 Score = 57.2 bits (139), Expect = 5e-10
 Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 6/45 (13%)

Query: 1  MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          MI  AE +G I PG   LIE TS NTGI LA      IAA++GY+
Sbjct: 50 MIVQAEKRGEIKPG-DTLIEATSGNTGIALAM-----IAAIKGYR 88

Length = 296

>gnl|CDD|182672 PRK10717, PRK10717, cysteine synthase A; Provisional

 Score = 56.4 bits (137), Expect = 9e-10
 Identities = 24/45 (53%), Positives = 31/45 (68%), Gaps = 6/45 (13%)

Query: 1  MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          +I DAE +GL+ PG +I +E T+ NTGIGLA      +AA RGYK
Sbjct: 51 IIWDAEKRGLLKPGGTI-VEGTAGNTGIGLAL-----VAAARGYK 89

Length = 330

>gnl|CDD|236972 PRK11761, cysM, cysteine synthase B; Provisional

 Score = 53.3 bits (129), Expect = 1e-08
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 36/99 (36%)

Query: 83  VSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFC 142
           VS +EA  T ++LA +EG+  G+SS  A AA++++A+   N    ++V++I         
Sbjct: 234 VSQQEAENTMRRLAREEGIFCGVSSGGAVAAALRIARENPNA---VIVAII--------- 281

Query: 143 INSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDS 181
                             C +      G+RYLST +F +
Sbjct: 282 ------------------CDR------GDRYLSTGVFPA 296

Length = 296

>gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase

 Score = 52.1 bits (125), Expect = 3e-08
 Identities = 25/45 (55%), Positives = 31/45 (68%), Gaps = 6/45 (13%)

Query: 1  MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          MI+DAE  G + PG +I IE TS NTGIGLA      +AA++GYK
Sbjct: 49 MIEDAEASGRLKPGDTI-IEPTSGNTGIGLAL-----VAAIKGYK 87

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven [Amino acid biosynthesis, Serine family]. Length = 454

>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 17/122 (13%)

Query: 26  TGIGLAFISAVRIAAVRGYKSYHCPT--RHLHHSEYVVLSHVVMG------------KHL 71
            GI            V G +    P   R L     V     + G              L
Sbjct: 174 AGIARGLKELGPGIRVIGVEPEGAPALARSLEAGRRVPKPTTIAGLGPGIPLDGELALEL 233

Query: 72  IQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAK--IPENDRILIV 129
           I     +  + VS EEA+E  + LA +EG+LV  SS AA AA++++A+  + +  R+++V
Sbjct: 234 IDEYVGDV-YAVSDEEALEAIRLLARREGILVEPSSAAALAAALRLAELELGKGKRVVVV 292

Query: 130 VS 131
           ++
Sbjct: 293 LT 294

Members of this family are all pyridoxal-phosphate dependent enzymes. This family includes: serine dehydratase EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16, tryptophan synthase beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8 P11096, cystathionine beta-synthase EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4. Length = 295

>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions

 Score = 50.6 bits (122), Expect = 7e-08
 Identities = 21/53 (39%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 80  CFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVA-KIPENDRILIVVS 131
              VS EEA+E  + LA +EG+LV  SS AA AA++K+A K+ +   ++++++
Sbjct: 190 VVTVSDEEALEAIRLLAREEGILVEPSSAAALAAALKLAKKLGKGKTVVVILT 242

This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehyd catalyzes the conversion of L- or D-serine to pyruvate and ammonia. Thr-dehyd is active as a homodimer and catalyzes the conversion of L-threonine to 2-oxobutanoate and ammonia. DAL is also a homodimer and catalyzes the alpha, beta-elimination reaction of both L- and D-alpha, beta-diaminopropionate to form pyruvate and ammonia. Thr-synth catalyzes the formation of threonine and inorganic phosphate from O-phosphohomoserine. Length = 244

>gnl|CDD|130208 TIGR01138, cysM, cysteine synthase B

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 6/45 (13%)

Query: 1  MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          MI +AE +G I PG  +LIE TS NTGI LA      IAA++GY+
Sbjct: 46 MIVEAEKRGEIKPGD-VLIEATSGNTGIALAM-----IAALKGYR 84

CysM differs from CysK in that it can also use thiosulfate instead of sulfide, to produce cysteine thiosulfonate instead of cysteine. Alternate name: O-acetylserine (thiol)-lyase [Amino acid biosynthesis, Serine family]. Length = 290

>gnl|CDD|182672 PRK10717, PRK10717, cysteine synthase A; Provisional

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 15/39 (38%), Positives = 26/39 (66%)

Query: 81  FQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAK 119
            ++  EEA+ TA +L  +EGL +G SS    AA++++A+
Sbjct: 254 IRIPDEEALSTAYRLLEEEGLCLGGSSGINVAAALRLAR 292

Length = 330

>gnl|CDD|130208 TIGR01138, cysM, cysteine synthase B

 Score = 45.3 bits (107), Expect = 6e-06
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 36/97 (37%)

Query: 83  VSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFC 142
           +   +A  T ++LA +EG+  G+SS  A AA++++A+  E    ++V             
Sbjct: 230 IHQRDAENTMRELAVREGIFCGVSSGGAVAAALRLAR--ELPDAVVVA------------ 275

Query: 143 INSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELF 179
                                 ++   G+RYLST +F
Sbjct: 276 ----------------------IICDRGDRYLSTGVF 290

CysM differs from CysK in that it can also use thiosulfate instead of sulfide, to produce cysteine thiosulfonate instead of cysteine. Alternate name: O-acetylserine (thiol)-lyase [Amino acid biosynthesis, Serine family]. Length = 290

>gnl|CDD|234409 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate biosynthesis protein SbnA

 Score = 45.3 bits (108), Expect = 6e-06
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 6/45 (13%)

Query: 1  MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          +++ A  +G ITPG + +IE +S N GI LA      I A +G +
Sbjct: 45 ILEAAIKRGRITPG-TTIIESSSGNLGIALAM-----ICAYKGLR 83

Members of this family include SbnA, a protein of the staphyloferrin B biosynthesis operon of Staphylococcus aureus. SbnA and SbnB together appear to synthesize 2,3-diaminopropionate, a precursor of certain siderophores and other secondary metabolites. SbnA is a pyridoxal phosphate-dependent enzyme [Cellular processes, Biosynthesis of natural products]. Length = 304

>gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 81  FQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSL 132
            +   +E+ + A++L  +EGLLVG SS +A  A++K A+    +  +IVV L
Sbjct: 247 IKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAALKAAEDELTEDQVIVVLL 298

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven [Amino acid biosynthesis, Serine family]. Length = 454

>gnl|CDD|234409 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate biosynthesis protein SbnA

 Score = 41.8 bits (99), Expect = 8e-05
 Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 37/108 (34%)

Query: 70  HLIQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKV-AKIPENDRILI 128
            L+  S  +    V   + +   ++LA +EG+L G SS    AA  ++  +IP    ++ 
Sbjct: 226 ELLDESLIDDVVHVPEYDTVAGCRRLARREGILAGGSSGTVVAAIKRLLPRIPPGSTVV- 284

Query: 129 VVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLST 176
                                               +LP  GERYL T
Sbjct: 285 -----------------------------------AILPDRGERYLDT 297

Members of this family include SbnA, a protein of the staphyloferrin B biosynthesis operon of Staphylococcus aureus. SbnA and SbnB together appear to synthesize 2,3-diaminopropionate, a precursor of certain siderophores and other secondary metabolites. SbnA is a pyridoxal phosphate-dependent enzyme [Cellular processes, Biosynthesis of natural products]. Length = 304

>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 7/45 (15%)

Query: 1  MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          +I  AE++G +   K ++IE T  NTGI LA       AA  G K
Sbjct: 38 LILLAEEEGKL--PKGVIIESTGGNTGIALAA-----AAARLGLK 75

This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehyd catalyzes the conversion of L- or D-serine to pyruvate and ammonia. Thr-dehyd is active as a homodimer and catalyzes the conversion of L-threonine to 2-oxobutanoate and ammonia. DAL is also a homodimer and catalyzes the alpha, beta-elimination reaction of both L- and D-alpha, beta-diaminopropionate to form pyruvate and ammonia. Thr-synth catalyzes the formation of threonine and inorganic phosphate from O-phosphohomoserine. Length = 244

>gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and metabolism]

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 83  VSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKV--AKIPENDRILIVV 130
           VS EE +E  + LA +EG+L+   S  A AA +K+    I  ++ +++V+
Sbjct: 319 VSDEEILEAIKLLAEREGILIEPHSAVAVAALLKLREKIIDPDETVVLVL 368

Length = 411

>gnl|CDD|107207 cd06446, Trp-synth_B, Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions

 Score = 36.7 bits (86), Expect = 0.004
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 83  VSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVA-KIPENDRILIVVS 131
           V+ EEA+E  + LA  EG++  + S  A A +IK+A K+ +   I++ +S
Sbjct: 306 VTDEEALEAFKLLARTEGIIPALESSHAIAYAIKLAKKLGKEKVIVVNLS 355

In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions. Length = 365

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	197
KOG1252	362	consensus Cystathionine beta-synthase and related	100.0
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	100.0
PLN02556	368	cysteine synthase/L-3-cyanoalanine synthase	99.97
PLN02565	322	cysteine synthase	99.96
KOG1481	391	consensus Cysteine synthase [Amino acid transport	99.95
PLN03013	429	cysteine synthase	99.95
PLN02356	423	phosphateglycerate kinase	99.94
PLN00011	323	cysteine synthase	99.94
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.93
PRK11761	296	cysM cysteine synthase B; Provisional	99.92
TIGR01138	290	cysM cysteine synthase B. Alternate name: O-acetyl	99.92
PRK10717	330	cysteine synthase A; Provisional	99.92
TIGR01139	298	cysK cysteine synthase A. This model distinguishes	99.92
TIGR01136	299	cysKM cysteine synthases. This model discriminates	99.9
cd01561	291	CBS_like CBS_like: This subgroup includes Cystathi	99.84
PRK06608	338	threonine dehydratase; Provisional	99.79
PRK06721	352	threonine synthase; Reviewed	99.79
PRK06352	351	threonine synthase; Validated	99.76
PRK07409	353	threonine synthase; Validated	99.74
cd06448	316	L-Ser-dehyd Serine dehydratase is a pyridoxal phos	99.73
cd01563	324	Thr-synth_1 Threonine synthase is a pyridoxal phos	99.71
PRK07334	403	threonine dehydratase; Provisional	99.71
cd06446	365	Trp-synth_B Tryptophan synthase-beta: Trptophan sy	99.71
PRK13028	402	tryptophan synthase subunit beta; Provisional	99.71
PLN02618	410	tryptophan synthase, beta chain	99.68
TIGR00263	385	trpB tryptophan synthase, beta subunit. Tryptophan	99.67
cd06447	404	D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph	99.67
PRK04346	397	tryptophan synthase subunit beta; Validated	99.66
PRK08197	394	threonine synthase; Validated	99.66
PRK13802	695	bifunctional indole-3-glycerol phosphate synthase/	99.66
cd01562	304	Thr-dehyd Threonine dehydratase: The first step in	99.66
PLN02970	328	serine racemase	99.65
TIGR02035	431	D_Ser_am_lyase D-serine ammonia-lyase. This family	99.65
cd00640	244	Trp-synth-beta_II Tryptophan synthase beta superfa	99.65
PRK08246	310	threonine dehydratase; Provisional	99.64
PRK06110	322	hypothetical protein; Provisional	99.63
PRK07048	321	serine/threonine dehydratase; Validated	99.63
PRK13803	610	bifunctional phosphoribosylanthranilate isomerase/	99.63
PRK06815	317	hypothetical protein; Provisional	99.62
PRK08329	347	threonine synthase; Validated	99.62
TIGR01415	419	trpB_rel pyridoxal-phosphate dependent TrpB-like e	99.61
PLN02569	484	threonine synthase	99.6
PRK08638	333	threonine dehydratase; Validated	99.6
PRK08198	404	threonine dehydratase; Provisional	99.59
PRK07591	421	threonine synthase; Validated	99.58
PRK06260	397	threonine synthase; Validated	99.57
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	99.57
PRK06382	406	threonine dehydratase; Provisional	99.56
PRK08206	399	diaminopropionate ammonia-lyase; Provisional	99.56
PRK12391	427	tryptophan synthase subunit beta; Reviewed	99.56
PRK02991	441	D-serine dehydratase; Provisional	99.55
PRK06381	319	threonine synthase; Validated	99.54
PRK08813	349	threonine dehydratase; Provisional	99.53
TIGR00260	328	thrC threonine synthase. Involved in threonine bio	99.53
PRK07476	322	eutB threonine dehydratase; Provisional	99.52
TIGR02079	409	THD1 threonine dehydratase. This model represents	99.52
PRK08639	420	threonine dehydratase; Validated	99.5
PRK05638	442	threonine synthase; Validated	99.47
TIGR02991	317	ectoine_eutB ectoine utilization protein EutB. Mem	99.47
PRK08526	403	threonine dehydratase; Provisional	99.43
PRK06450	338	threonine synthase; Validated	99.41
PF00291	306	PALP: Pyridoxal-phosphate dependent enzyme; InterP	99.39
TIGR01275	311	ACC_deam_rel pyridoxal phosphate-dependent enzymes	99.39
TIGR03844	398	cysteate_syn cysteate synthase. Members of this fa	99.38
TIGR01124	499	ilvA_2Cterm threonine ammonia-lyase, biosynthetic,	99.37
PRK12390	337	1-aminocyclopropane-1-carboxylate deaminase; Provi	99.36
PRK09224	504	threonine dehydratase; Reviewed	99.35
PRK14045	329	1-aminocyclopropane-1-carboxylate deaminase; Provi	99.35
PRK12483	521	threonine dehydratase; Reviewed	99.35
PLN02550	591	threonine dehydratase	99.34
cd06449	307	ACCD Aminocyclopropane-1-carboxylate deaminase (AC	99.33
PRK03910	331	D-cysteine desulfhydrase; Validated	99.16
TIGR01274	337	ACC_deam 1-aminocyclopropane-1-carboxylate deamina	99.14
TIGR03528	396	2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem	99.12
TIGR01747	376	diampropi_NH3ly diaminopropionate ammonia-lyase fa	99.1
COG0498	411	ThrC Threonine synthase [Amino acid transport and	98.95
COG0133	396	TrpB Tryptophan synthase beta chain [Amino acid tr	98.94
COG1171	347	IlvA Threonine dehydratase [Amino acid transport a	98.79
KOG1250	457	consensus Threonine/serine dehydratases [Amino aci	98.71
KOG1395	477	consensus Tryptophan synthase beta chain [Amino ac	98.44
KOG1251	323	consensus Serine racemase [Signal transduction mec	98.07
COG1350	432	Predicted alternative tryptophan synthase beta-sub	97.07
cd01560	460	Thr-synth_2 Threonine synthase catalyzes the final	96.81
PRK09225	462	threonine synthase; Validated	96.72
COG3048	443	DsdA D-serine dehydratase [Amino acid transport an	96.6
cd01560	460	Thr-synth_2 Threonine synthase catalyzes the final	90.98
PRK09225	462	threonine synthase; Validated	89.54
PF03192	210	DUF257: Pyrococcus protein of unknown function, DU	89.14
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	84.85

>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]

Probab=100.00  E-value=7e-42  Score=308.72  Aligned_cols=150  Identities=58%  Similarity=0.751  Sum_probs=142.5

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-------------------------------   49 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-------------------------------   49 (197)
                      ||++||++|+|+||.++|||+||||||||||++|+     .+|||++++                               
T Consensus        90 Mi~~Ae~~G~i~pg~stliEpTSGNtGigLA~~~a-----~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~  164 (362)
T KOG1252|consen   90 MIEDAEKKGLITPGKSTLIEPTSGNTGIGLAYMAA-----LRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKG  164 (362)
T ss_pred             HHHHHHHcCCccCCceEEEecCCCchHHHHHHHHH-----HcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCC
Confidence            89999999999999777999999999999999999     999999999                               


Q ss_pred             -----------------------------eccccc---------------------------------------------
Q 043034           50 -----------------------------PTRHLH---------------------------------------------   55 (197)
Q Consensus        50 -----------------------------p~~h~~---------------------------------------------   55 (197)
                                                   |.+||.                                             
T Consensus       165 ~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~  244 (362)
T KOG1252|consen  165 PESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYETTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVG  244 (362)
T ss_pred             hHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccccccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEE
Confidence                                         778886                                             


Q ss_pred             --CCCcceeccccccc--ccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhc
Q 043034           56 --HSEYVVLSHVVMGK--HLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAK  119 (197)
Q Consensus        56 --p~~~~~~~~~~~~~--~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~  119 (197)
                        |.+|.+++++.+|+  |.|+|||            +|+++.++++||+.|+|+|+++|||++|+|||+|++||+++++
T Consensus       245 vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld~~~vd~~~~~~~d~A~~~Ar~La~eeGll~G~SSGan~~aAl~~a~  324 (362)
T KOG1252|consen  245 VDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLDTKLVDEVLKVSSDEAIEMARRLALEEGLLVGISSGANVAAALKLAK  324 (362)
T ss_pred             eCCCcceeccCCCCCCCccceeccccCcCccccchHHHHHHHHhCCHHHHHHHHHHHHhhCeeecccchHHHHHHHHHHh
Confidence              88999999999999  9999999            9999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCchhHHHHhhc
Q 043034          120 IPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETC  189 (197)
Q Consensus       120 ~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~~~~~~~~~  189 (197)
                      +.+++++.||+                                  ++||.|+||+||.|||+|++|++..
T Consensus       325 ~~en~~kliV~----------------------------------~~pd~ge~Y~st~L~d~w~~e~~~~  360 (362)
T KOG1252|consen  325 RPENAGKLIVV----------------------------------TFPDFGERYLSTFLFDEWREEAEKL  360 (362)
T ss_pred             ccccCCcEEEE----------------------------------ECCCcchhhhhhhhHHHHHHHHhhh
Confidence            98888888888                                  7799999999999999999998754

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=3.4e-41  Score=300.48  Aligned_cols=134  Identities=49%  Similarity=0.687  Sum_probs=126.0

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-------------------------------   49 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-------------------------------   49 (197)
                      ||++||++|+|+||+| |||+|||||||||||+|+     ++|||++++                               
T Consensus        49 mI~~Ae~~G~l~pG~t-IVE~TSGNTGI~LA~vaa-----~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~  122 (300)
T COG0031          49 MIEDAEKRGLLKPGGT-IVEATSGNTGIALAMVAA-----AKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMK  122 (300)
T ss_pred             HHHHHHHcCCCCCCCE-EEEcCCChHHHHHHHHHH-----HcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchH
Confidence            8999999999999998 999999999999999999     999999999                               


Q ss_pred             ----------------------------eccccc----------------------------------------------
Q 043034           50 ----------------------------PTRHLH----------------------------------------------   55 (197)
Q Consensus        50 ----------------------------p~~h~~----------------------------------------------   55 (197)
                                                  |.+||+                                              
T Consensus       123 ~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~v  202 (300)
T COG0031         123 GAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAV  202 (300)
T ss_pred             HHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEE
Confidence                                        567775                                              


Q ss_pred             -CCCcceecccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC
Q 043034           56 -HSEYVVLSHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE  122 (197)
Q Consensus        56 -p~~~~~~~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~  122 (197)
                       |.+|++++++. ++|.|||||            +|++++|+|+||++++|+|+++|||++|+|||||++||+++++++.
T Consensus       203 dP~~S~~~~~G~-g~~~i~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La~~eGilvG~SsGA~~~aa~~~a~~~~  281 (300)
T COG0031         203 DPEGSVLLSGGE-GPHKIEGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREEGLLVGISSGAALAAALKLAKELP  281 (300)
T ss_pred             CCCCCcccCCCC-CCcccCCCCCCcCCcccccccCceEEEECHHHHHHHHHHHHHHhCeeecccHHHHHHHHHHHHHhcC
Confidence             77888887655 899999999            9999999999999999999999999999999999999999999985


Q ss_pred             CCCceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCc
Q 043034          123 NDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLST  176 (197)
Q Consensus       123 ~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst  176 (197)
                       ++++|||                                  |+||+|+||||+
T Consensus       282 -~g~~IVt----------------------------------i~pD~G~RYls~  300 (300)
T COG0031         282 -AGKTIVT----------------------------------ILPDSGERYLSK  300 (300)
T ss_pred             -CCCeEEE----------------------------------EECCCcccccCC
Confidence             6899999                                  999999999983

>PLN02556 cysteine synthase/L-3-cyanoalanine synthase

Probab=99.97  E-value=1.7e-30  Score=235.81  Aligned_cols=152  Identities=49%  Similarity=0.678  Sum_probs=132.9

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-------------------------------   49 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-------------------------------   49 (197)
                      ||.+|+++|.|+||.++|||+||||+|+|||++|+     .+||+++++                               
T Consensus        97 ~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~~a~-----~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~  171 (368)
T PLN02556         97 MIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMAA-----MKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGG  171 (368)
T ss_pred             HHHHHHHcCCcCCCCCEEEEeCCchHHHHHHHHHH-----HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccH
Confidence            68899999999999545999999999999999999     999999999                               


Q ss_pred             --------------------------eccccc-----------------------------------------------C
Q 043034           50 --------------------------PTRHLH-----------------------------------------------H   56 (197)
Q Consensus        50 --------------------------p~~h~~-----------------------------------------------p   56 (197)
                                                +.+||.                                               |
T Consensus       172 ~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep  251 (368)
T PLN02556        172 TVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEP  251 (368)
T ss_pred             HHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEee
Confidence                                      112332                                               4


Q ss_pred             CCcceecccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCC
Q 043034           57 SEYVVLSHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEND  124 (197)
Q Consensus        57 ~~~~~~~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~  124 (197)
                      .++.++.++.++++.|+|+|            +|+++.|+|+|+++++|+|++++|+++|+||||+++||++++++...+
T Consensus       252 ~~~~~~~~g~~~~~~i~g~g~~~~p~~~~~~~~d~~v~Vsd~ea~~a~r~l~~~eGi~vg~ssgA~~~aal~~a~~~~~~  331 (368)
T PLN02556        252 AESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVLEVSSEDAVNMARELALKEGLMVGISSGANTVAALRLAKMPENK  331 (368)
T ss_pred             CCCccccCCCCCCeeeeeccCCCCccccchhhCCeEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhccCC
Confidence            55556666666778888876            799999999999999999999999999999999999999999876446


Q ss_pred             CceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCchhHHHHhhccc
Q 043034          125 RILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETCLL  191 (197)
Q Consensus       125 g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~~~~~~~~~~~  191 (197)
                      +++||+                                  |+||+|+||+++.+||+|+++.+..-.
T Consensus       332 ~~~IV~----------------------------------v~~d~g~kY~~~~~~~~~~~~~~~~~~  364 (368)
T PLN02556        332 GKLIVT----------------------------------VHPSFGERYLSSVLFQELRKEAENMQP  364 (368)
T ss_pred             cCEEEE----------------------------------EECCCCcccCChhhhHHHHHHHHhcCC
Confidence            889999                                  999999999999999999999987643

>PLN02565 cysteine synthase

Probab=99.96  E-value=6.1e-29  Score=221.44  Aligned_cols=152  Identities=60%  Similarity=0.780  Sum_probs=130.0

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-------------------------------   49 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-------------------------------   49 (197)
                      |+..++++|.+.||++.|||+||||+|+|||++|+     .+|+|++++                               
T Consensus        53 ~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~-----~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~  127 (322)
T PLN02565         53 MITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAA-----AKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKG  127 (322)
T ss_pred             HHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHH-----HcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHH
Confidence            57889999999999545999999999999999999     999999998                               


Q ss_pred             --------------------------eccccc-----------------------------------------------C
Q 043034           50 --------------------------PTRHLH-----------------------------------------------H   56 (197)
Q Consensus        50 --------------------------p~~h~~-----------------------------------------------p   56 (197)
                                                |.+||.                                               |
T Consensus       128 ~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep  207 (322)
T PLN02565        128 AVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEP  207 (322)
T ss_pred             HHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEec
Confidence                                      122322                                               4


Q ss_pred             CCcceecccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCC
Q 043034           57 SEYVVLSHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEND  124 (197)
Q Consensus        57 ~~~~~~~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~  124 (197)
                      .++..+.++.++++.++|+|            +|+++.|+|+|+++++|+|++++|+++|||||++++++++++++...+
T Consensus       208 ~~s~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~v~V~d~ea~~a~~~l~~~~gi~vg~ssga~laaa~~~a~~~~~~  287 (322)
T PLN02565        208 VESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVVQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPENA  287 (322)
T ss_pred             CCCccccCCCCCCccCCCCCCCCCCCcCCHhHCCEEEEECHHHHHHHHHHHHHHhCcEEeccHHHHHHHHHHHHHhcCCC
Confidence            45545544555678888877            899999999999999999999999999999999999999999876446


Q ss_pred             CceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCchhHHHHhhccc
Q 043034          125 RILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETCLL  191 (197)
Q Consensus       125 g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~~~~~~~~~~~  191 (197)
                      +++||+                                  ++||+|+||++|.+|+.+..++++..+
T Consensus       288 ~~~vV~----------------------------------v~~d~G~ky~~~~~~~~~~~~~~~~~~  320 (322)
T PLN02565        288 GKLIVV----------------------------------IFPSFGERYLSSVLFESVKKEAENMVF  320 (322)
T ss_pred             CCeEEE----------------------------------EECCCccccCCchhhHHHHHHHhcCcc
Confidence            789999                                  999999999999999988888777643

>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]

Probab=99.95  E-value=1.1e-28  Score=220.77  Aligned_cols=147  Identities=29%  Similarity=0.395  Sum_probs=125.0

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-------------------------------   49 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-------------------------------   49 (197)
                      ||++||++|+|-||++ |+|.|+|||||+||++|.     ++|||+.++                               
T Consensus        87 iir~Aee~GkL~~gg~-v~EGtaGsTgIslA~v~~-----a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp  160 (391)
T KOG1481|consen   87 IIRTAEEKGKLVRGGT-VVEGTAGSTGISLAHVAR-----ALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDP  160 (391)
T ss_pred             HHHHHHHcCCcccCce-EEecCCCccchhHHHhhh-----hcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccCh
Confidence            6999999999999997 999999999999999999     999999999                               


Q ss_pred             ----------------------------------eccccc----------------------------------------
Q 043034           50 ----------------------------------PTRHLH----------------------------------------   55 (197)
Q Consensus        50 ----------------------------------p~~h~~----------------------------------------   55 (197)
                                                        +.+||+                                        
T Consensus       161 ~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHyetTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~  240 (391)
T KOG1481|consen  161 NHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHYETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDG  240 (391)
T ss_pred             hHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHhcCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCC
Confidence                                              446665                                        


Q ss_pred             --------CCCcceecc---ccc-------c-------cccccccc--------------ceeEEEcCcHHHHHHHHHHH
Q 043034           56 --------HSEYVVLSH---VVM-------G-------KHLIQASC--------------HEYCFQVSSEEAIETAQQLA   96 (197)
Q Consensus        56 --------p~~~~~~~~---~~~-------~-------~~~ieGiG--------------IDeiv~VsDeEAi~aaR~LA   96 (197)
                              |.+|-.+..   ++|       |       ....||||              ||+.++|+|++|++|.|.|.
T Consensus       241 ~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~dti~EGIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr~Ll  320 (391)
T KOG1481|consen  241 RVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQVDTITEGIGINRITGNFQMAEDLIDDAMRVTDEQAINMSRYLL  320 (391)
T ss_pred             ceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCCcchhhhcccccccccccccchhhhhhheecChHHHHHHHHHhh
Confidence                    444422211   111       2       23468888              99999999999999999999


Q ss_pred             HHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCc
Q 043034           97 HKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLST  176 (197)
Q Consensus        97 r~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst  176 (197)
                      .++|||||.||+.|..||.++|+.+. +|++|||                                  |+||+|.||||+
T Consensus       321 ~~dGLFvGsSsa~N~VaAv~vAk~Lg-pG~~iVt----------------------------------ilCDsG~rh~sk  365 (391)
T KOG1481|consen  321 DNDGLFVGSSSALNCVAAVRVAKTLG-PGHTIVT----------------------------------ILCDSGSRHLSK  365 (391)
T ss_pred             hcCceEecchhhHHHHHHHHHHHhcC-CCceEEE----------------------------------EEeCCcchHHHH
Confidence            99999999999999999999999985 8999999                                  999999999999


Q ss_pred             ccCchhHHHHhh
Q 043034          177 ELFDSITHEAET  188 (197)
Q Consensus       177 ~~~~~~~~~~~~  188 (197)
                      .+.++.+....-
T Consensus       366 ~~~~~~l~~~~l  377 (391)
T KOG1481|consen  366 LFSESFLESKKL  377 (391)
T ss_pred             hcCHHHHhhcCC
Confidence            666666655543

>PLN03013 cysteine synthase

Probab=99.95  E-value=1.4e-27  Score=221.60  Aligned_cols=141  Identities=55%  Similarity=0.711  Sum_probs=119.8

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-------------------------------   49 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-------------------------------   49 (197)
                      ||.+|+++|.|+||+++|||+||||||+|||++|+     .+|||++++                               
T Consensus       161 ~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~~a~-----~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~  235 (429)
T PLN03013        161 MVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAA-----SRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTG  235 (429)
T ss_pred             HHHHHHHcCCcCCCCcEEEEECCcHHHHHHHHHHH-----HcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHH
Confidence            68899999999999545999999999999999999     999999999                               


Q ss_pred             --------------------------eccccc-----------------------------------------------C
Q 043034           50 --------------------------PTRHLH-----------------------------------------------H   56 (197)
Q Consensus        50 --------------------------p~~h~~-----------------------------------------------p   56 (197)
                                                |.+||+                                               |
T Consensus       236 a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep  315 (429)
T PLN03013        236 AVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEP  315 (429)
T ss_pred             HHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEe
Confidence                                      123432                                               4


Q ss_pred             CCcceecccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCC
Q 043034           57 SEYVVLSHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEND  124 (197)
Q Consensus        57 ~~~~~~~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~  124 (197)
                      .++..+.++.++++.|+|+|            +|+++.|+|+|+++++|+|++++|+++|+||||+++||++++++..++
T Consensus       316 ~gs~~l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~vv~VsD~ea~~a~r~La~~eGi~vG~SSGAalaAalkla~~~~~~  395 (429)
T PLN03013        316 TESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENA  395 (429)
T ss_pred             CCCchhhCCCCCCcccCcccCCcCCHhHHHHhccEEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhccCC
Confidence            55555555566788899988            899999999999999999999999999999999999999999875545


Q ss_pred             CceE-EEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcc-cCc
Q 043034          125 RILI-VVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTE-LFD  180 (197)
Q Consensus       125 g~~V-Vt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~-~~~  180 (197)
                      +++| |+                                  |++|+|+||+++. +|+
T Consensus       396 g~~IVv~----------------------------------i~~d~g~~Y~~~~~~~~  419 (429)
T PLN03013        396 GKLIAVS----------------------------------LFASGRDIYTPRCSSLS  419 (429)
T ss_pred             CCEEEEE----------------------------------EcCCCchhchhhhhcCC
Confidence            6665 66                                  8889999999984 454

>PLN02356 phosphateglycerate kinase

Probab=99.94  E-value=5.9e-27  Score=217.17  Aligned_cols=83  Identities=24%  Similarity=0.278  Sum_probs=75.7

Q ss_pred             cccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccc
Q 043034           69 KHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYK  136 (197)
Q Consensus        69 ~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d  136 (197)
                      ++.++|+|            +|+++.|+|+|+++++|+|++++|+++|||||++++|++++++++. ++++||+      
T Consensus       315 ~tia~Gig~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~vg~Ssaa~laaa~~la~~~~-~g~~VV~------  387 (423)
T PLN02356        315 DTITEGIGINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSSSAMNCVGAVRVAQSLG-PGHTIVT------  387 (423)
T ss_pred             CeecCcCcCCCCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCeeEeECHHHHHHHHHHHHHHhC-CCCeEEE------
Confidence            56788988            9999999999999999999999999999999999999999997753 6889999      


Q ss_pred             cccceecccccCCCCCCccccccccceeeeccCCccccCcccCchhHHHH
Q 043034          137 LYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEA  186 (197)
Q Consensus       137 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~~~~~~  186 (197)
                                                  |+||+|+|||||.|.|+|+.+.
T Consensus       388 ----------------------------Il~d~G~kyl~~~~~~~w~~~~  409 (423)
T PLN02356        388 ----------------------------ILCDSGMRHLSKFHDPQYLSQH  409 (423)
T ss_pred             ----------------------------EECCCCcchhhhhcCHHHHHhc
Confidence                                        9999999999998888888754

>PLN00011 cysteine synthase

Probab=99.94  E-value=1.1e-26  Score=206.18  Aligned_cols=149  Identities=64%  Similarity=0.822  Sum_probs=126.0

Q ss_pred             CHHHHHHcCCCCCC-CEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE------------------------------
Q 043034            1 MIKDAEDKGLITPG-KSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC------------------------------   49 (197)
Q Consensus         1 mi~~ae~~G~i~pG-~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~------------------------------   49 (197)
                      |+.+|+++|+|.|| ++ |||+||||+|++||++|+     .+|++++++                              
T Consensus        55 ~l~~a~~~g~~~~g~~~-vv~aSsGN~g~alA~~a~-----~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~  128 (323)
T PLN00011         55 MIKDAEDKGLITPGKST-LIEATAGNTGIGLACIGA-----ARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLK  128 (323)
T ss_pred             HHHHHHHcCCCCCCCcE-EEEeCCChHHHHHHHHHH-----HcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChH
Confidence            57899999999999 66 999999999999999999     999999999                              


Q ss_pred             ---------------------------eccccc-----------------------------------------------
Q 043034           50 ---------------------------PTRHLH-----------------------------------------------   55 (197)
Q Consensus        50 ---------------------------p~~h~~-----------------------------------------------   55 (197)
                                                 |..||.                                               
T Consensus       129 ~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe  208 (323)
T PLN00011        129 GMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVE  208 (323)
T ss_pred             HHHHHHHHHHHhCCCeEEeccccCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEe
Confidence                                       111221                                               


Q ss_pred             CCCcceecccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCC
Q 043034           56 HSEYVVLSHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEN  123 (197)
Q Consensus        56 p~~~~~~~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~  123 (197)
                      |.++..+....+.++.++|++            +|+++.|+|+|+++++|+|++++|+++|+|||++++++++++++...
T Consensus       209 ~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~Gi~~~~ssga~laaa~~~~~~~~~  288 (323)
T PLN00011        209 PVESAVLSGGQPGPHLIQGIGSGIIPFNLDLTIVDEIIQVTGEEAIETAKLLALKEGLLVGISSGAAAAAALKVAKRPEN  288 (323)
T ss_pred             cCCCcccCCCCCCCCCCCCCCCCCCCcccChhhCCeEEEECHHHHHHHHHHHHHhcCCeEcccHHHHHHHHHHHHHhccC
Confidence            344444444455567777776            88999999999999999999999999999999999999999876534


Q ss_pred             CCceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCchhHHHHhhc
Q 043034          124 DRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETC  189 (197)
Q Consensus       124 ~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~~~~~~~~~  189 (197)
                      ++++||+                                  |+||+|+||+||.+|+.|..++...
T Consensus       289 ~~~~vv~----------------------------------i~~d~G~ky~~~~~~~~~~~~~~~~  320 (323)
T PLN00011        289 AGKLIVV----------------------------------IFPSGGERYLSTKLFESVRYEAENL  320 (323)
T ss_pred             CCCeEEE----------------------------------EECCCccccCChhhhHHHHHhhhcC
Confidence            5789999                                  9999999999999999998876443

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.93  E-value=8.7e-26  Score=205.74  Aligned_cols=144  Identities=35%  Similarity=0.520  Sum_probs=118.8

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-----------------------ec------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-----------------------PT------   51 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-----------------------p~------   51 (197)
                      ||.+|+++|.+.||++ |||+||||+|+|||++|+     .+|++++++                       |.      
T Consensus        49 ~l~~a~~~g~~~~g~~-vv~~ssGN~g~alA~~a~-----~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~  122 (454)
T TIGR01137        49 MIEDAEASGRLKPGDT-IIEPTSGNTGIGLALVAA-----IKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDS  122 (454)
T ss_pred             HHHHHHHcCCCCCCCE-EEEeCCcHHHHHHHHHHH-----HcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCc
Confidence            5789999999999998 999999999999999999     999999999                       11      


Q ss_pred             -------------------------------cccc---------------------------------------------
Q 043034           52 -------------------------------RHLH---------------------------------------------   55 (197)
Q Consensus        52 -------------------------------~h~~---------------------------------------------   55 (197)
                                                     +||.                                             
T Consensus       123 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~  202 (454)
T TIGR01137       123 PESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVG  202 (454)
T ss_pred             hHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhHHHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEE
Confidence                                           1111                                             


Q ss_pred             --CCCcceeccc------ccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHH
Q 043034           56 --HSEYVVLSHV------VMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASI  115 (197)
Q Consensus        56 --p~~~~~~~~~------~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAl  115 (197)
                        |.++. +.+.      ...++.++|+|            +|+++.|+|+|+++++|+|++++|+++|||||++++|++
T Consensus       203 ve~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~~V~~~e~~~a~~~l~~~~gi~~~~ssg~~~aa~~  281 (454)
T TIGR01137       203 ADPEGSI-LAQPENLNKTGRTPYKVEGIGYDFIPTVLDRKVVDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAAL  281 (454)
T ss_pred             EecCCCc-ccCCCcccCCCCCCccCCCCCCCCCCCcCCchhCCeEEEECHHHHHHHHHHHHHHhCccCcHHHHHHHHHHH
Confidence              22222 2111      11235677776            789999999999999999999999999999999999999


Q ss_pred             HHhcC-CCCCCceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCchhHHHH
Q 043034          116 KVAKI-PENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEA  186 (197)
Q Consensus       116 klA~~-~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~~~~~~  186 (197)
                      +++++ + +++++||+                                  ++||+|+||++|.|+|+|....
T Consensus       282 ~~~~~~~-~~~~~vv~----------------------------------~~~d~g~~y~~~~~~~~w~~~~  318 (454)
T TIGR01137       282 KAAEDEL-TEDQVIVV----------------------------------LLPDSIRNYMTKFLNDEWMKDN  318 (454)
T ss_pred             HHHHhhc-CCCCEEEE----------------------------------EECCCCccccCcccChHHHHhc
Confidence            99884 4 36789999                                  9999999999998888887753

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>PRK11761 cysM cysteine synthase B; Provisional

Probab=99.92  E-value=8.3e-25  Score=192.31  Aligned_cols=138  Identities=38%  Similarity=0.573  Sum_probs=109.6

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-------------------------------   49 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-------------------------------   49 (197)
                      ||.+|+++|.++||++ |||+||||+|++||++|+     .+|++++++                               
T Consensus        50 ~~~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~-----~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~  123 (296)
T PRK11761         50 MIVQAEKRGEIKPGDT-LIEATSGNTGIALAMIAA-----IKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEG  123 (296)
T ss_pred             HHHHHHHcCCCCCCCE-EEEeCCChHHHHHHHHHH-----HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHH
Confidence            5789999999999998 999999999999999999     999999999                               


Q ss_pred             -------------------------eccccc----------CC--Ccce------------------------eccccc-
Q 043034           50 -------------------------PTRHLH----------HS--EYVV------------------------LSHVVM-   67 (197)
Q Consensus        50 -------------------------p~~h~~----------p~--~~~~------------------------~~~~~~-   67 (197)
                                               |..||.          |.  ...+                        +.++++ 
T Consensus       124 ~~~~a~~l~~~~~~~~~~~~~n~~~~~~~~~t~~~Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~  203 (296)
T PRK11761        124 ARDLALQMQAEGEGKVLDQFANPDNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPE  203 (296)
T ss_pred             HHHHHHHHHhccCCEecCCCCChhhHHHHhhchHHHHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence                                     122322          00  0000                        001111 


Q ss_pred             ccccccccc---------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEee
Q 043034           68 GKHLIQASC---------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSL  132 (197)
Q Consensus        68 ~~~~ieGiG---------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~  132 (197)
                      +.+.|.|++               +|+++.|+|+|+++++|+|++++|+++|||||++++++++++++.  ++++||+  
T Consensus       204 ~~~~i~g~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~gi~ve~ssga~laaa~~~~~~~--~~~~vV~--  279 (296)
T PRK11761        204 EGSSIPGIRRWPEEYLPKIFDASRVDRVLDVSQQEAENTMRRLAREEGIFCGVSSGGAVAAALRIAREN--PNAVIVA--  279 (296)
T ss_pred             CCCcCcCCCCCCCCcCCcccChhhCCEEEEECHHHHHHHHHHHHHHhCceEchhHHHHHHHHHHHHHHC--CCCeEEE--
Confidence            112222221               899999999999999999999999999999999999999998774  5679999  


Q ss_pred             cccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCc
Q 043034          133 ISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFD  180 (197)
Q Consensus       133 ~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~  180 (197)
                                                      |+||+|+||++|..|+
T Consensus       280 --------------------------------v~~d~g~ky~~~~~~~  295 (296)
T PRK11761        280 --------------------------------IICDRGDRYLSTGVFP  295 (296)
T ss_pred             --------------------------------EECCCCcccCChhccc
Confidence                                            9999999999997775

>TIGR01138 cysM cysteine synthase B

Probab=99.92  E-value=8.9e-25  Score=191.39  Aligned_cols=137  Identities=35%  Similarity=0.530  Sum_probs=108.5

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-------------------------------   49 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-------------------------------   49 (197)
                      ||.+|+++|.+.||++ |||+||||+|++||++|+     .+|+|++++                               
T Consensus        46 ~v~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~-----~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~  119 (290)
T TIGR01138        46 MIVEAEKRGEIKPGDV-LIEATSGNTGIALAMIAA-----LKGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEG  119 (290)
T ss_pred             HHHHHHHcCCCCCCCE-EEEECCChHHHHHHHHHH-----HcCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHH
Confidence            5789999999999998 999999999999999999     999999999                               


Q ss_pred             -------------------------eccccc----------CC--Cccee------------------------ccccc-
Q 043034           50 -------------------------PTRHLH----------HS--EYVVL------------------------SHVVM-   67 (197)
Q Consensus        50 -------------------------p~~h~~----------p~--~~~~~------------------------~~~~~-   67 (197)
                                               |..||.          +.  ...+.                        -++++ 
T Consensus       120 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~  199 (290)
T TIGR01138       120 ARDLALELANRGEGKLLDQFNNPDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPE  199 (290)
T ss_pred             HHHHHHHHHHhCCCCCCCccCCcccHHHHhHhHHHHHHHHcCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence                                     112221          00  00000                        01111 


Q ss_pred             ccccccccc---------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEee
Q 043034           68 GKHLIQASC---------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSL  132 (197)
Q Consensus        68 ~~~~ieGiG---------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~  132 (197)
                      +...++|+.               +|+++.|+|+|+++++++|++++|+++|+|||+++++++++++++  ++++||+  
T Consensus       200 ~~~~~~g~~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~~g~ssga~laa~~~~~~~~--~~~~vv~--  275 (290)
T TIGR01138       200 EGSSIPGIRRWPTEYLPGIFDASLVDRVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAAALRLAREL--PDAVVVA--  275 (290)
T ss_pred             CCCCccCCCCCCCCcCCcccChhhCcEEEEECHHHHHHHHHHHHHHhCceEcHhHHHHHHHHHHHHHHC--CCCeEEE--
Confidence            112233321               799999999999999999999999999999999999999998875  4689999  


Q ss_pred             cccccccceecccccCCCCCCccccccccceeeeccCCccccCcccC
Q 043034          133 ISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELF  179 (197)
Q Consensus       133 ~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~  179 (197)
                                                      ++||+|+||++|.+|
T Consensus       276 --------------------------------v~~d~g~ky~~~~~~  290 (290)
T TIGR01138       276 --------------------------------IICDRGDRYLSTGVF  290 (290)
T ss_pred             --------------------------------EECCCCccccCcccC
Confidence                                            999999999998554

Alternate name: O-acetylserine (thiol)-lyase

>PRK10717 cysteine synthase A; Provisional

Probab=99.92  E-value=2.3e-24  Score=190.80  Aligned_cols=145  Identities=34%  Similarity=0.503  Sum_probs=119.5

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-----------------------ecc-----
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-----------------------PTR-----   52 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-----------------------p~~-----   52 (197)
                      |+.+|+++|.++||++ |||+||||+|++||++|+     .+|++++++                       +..     
T Consensus        51 ~v~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~-----~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~  124 (330)
T PRK10717         51 IIWDAEKRGLLKPGGT-IVEGTAGNTGIGLALVAA-----ARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANP  124 (330)
T ss_pred             HHHHHHHcCCCCCCCE-EEEeCCcHHHHHHHHHHH-----HcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccc
Confidence            5788999999999998 999999999999999999     999999999                       110     


Q ss_pred             ------------------------------------ccc-----------------------------------------
Q 043034           53 ------------------------------------HLH-----------------------------------------   55 (197)
Q Consensus        53 ------------------------------------h~~-----------------------------------------   55 (197)
                                                          ||.                                         
T Consensus       125 ~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~  204 (330)
T PRK10717        125 NNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKV  204 (330)
T ss_pred             cchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHHHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCC
Confidence                                                000                                         


Q ss_pred             ------CCCcceecc---c---ccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHH
Q 043034           56 ------HSEYVVLSH---V---VMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAA  111 (197)
Q Consensus        56 ------p~~~~~~~~---~---~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaL  111 (197)
                            |.++.....   +   ..+++.++|+|            +|+++.|+|+|+++++++|++++|+++|||||+++
T Consensus       205 ~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~vepssga~l  284 (330)
T PRK10717        205 KIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGRITANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSGINV  284 (330)
T ss_pred             EEEEEcCCCCccccccccCCcCCCCCcccCcCCCCcCCcccChhhCCEEEEECHHHHHHHHHHHHHhcCCeEeecHHHHH
Confidence                  222221110   0   13446677776            88999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCchhHHHH
Q 043034          112 AASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEA  186 (197)
Q Consensus       112 AAAlklA~~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~~~~~~  186 (197)
                      ++++++++++ .++++||+                                  ++||+|+||+++.|.|+|..+.
T Consensus       285 aa~~~l~~~~-~~~~~Vv~----------------------------------v~~g~g~ky~~~~~~d~~~~~~  324 (330)
T PRK10717        285 AAALRLAREL-GPGHTIVT----------------------------------ILCDSGERYQSKLFNPDFLREK  324 (330)
T ss_pred             HHHHHHHHhc-CCCCEEEE----------------------------------EECCCchhhcccccCHHHHHhc
Confidence            9999998875 36789999                                  9999999999998888988764

>TIGR01139 cysK cysteine synthase A

Probab=99.92  E-value=2.3e-24  Score=187.87  Aligned_cols=138  Identities=57%  Similarity=0.749  Sum_probs=114.8

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-------------------------------   49 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-------------------------------   49 (197)
                      |+.+|+++|.+.||++ |||+||||+|++||++|+     .+|++++++                               
T Consensus        44 ~l~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~-----~~Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~  117 (298)
T TIGR01139        44 MIWDAEKRGLLKPGKT-IVEPTSGNTGIALAMVAA-----ARGYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKG  117 (298)
T ss_pred             HHHHHHHcCCCCCCCE-EEEeCCChhHHHHHHHHH-----HcCCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHH
Confidence            5788999999999998 999999999999999999     999999999                               


Q ss_pred             ------------e---------------ccccc-----------------------------------------------
Q 043034           50 ------------P---------------TRHLH-----------------------------------------------   55 (197)
Q Consensus        50 ------------p---------------~~h~~-----------------------------------------------   55 (197)
                                  +               .+||.                                               
T Consensus       118 ~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve  197 (298)
T TIGR01139       118 AIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVE  197 (298)
T ss_pred             HHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHHhCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEe
Confidence                        0               11111                                               


Q ss_pred             CCCcceecccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCC
Q 043034           56 HSEYVVLSHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEN  123 (197)
Q Consensus        56 p~~~~~~~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~  123 (197)
                      |.++..+.....+++.++|+|            +|+++.|+|+|+++++|+|++++|+++|||||++++++++++++.. 
T Consensus       198 ~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~~pssga~laa~~~~~~~~~-  276 (298)
T TIGR01139       198 PAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSDEEAIETARRLAAEEGILVGISSGAAVAAALKLAKRPE-  276 (298)
T ss_pred             cCCCcccCCCCCCCCCCCCCCCCCCCCccChhhCCEEEEECHHHHHHHHHHHHHhcCceEcccHHHHHHHHHHHHHhcC-
Confidence            333333333334456677765            7999999999999999999999999999999999999999998764 


Q ss_pred             CCceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccC
Q 043034          124 DRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELF  179 (197)
Q Consensus       124 ~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~  179 (197)
                      ++++||+                                  ++||+|+||++|..|
T Consensus       277 ~~~~vv~----------------------------------v~~d~G~ky~~~~~~  298 (298)
T TIGR01139       277 PDKLIVV----------------------------------ILPSTGERYLSTPLF  298 (298)
T ss_pred             CCCEEEE----------------------------------EECCCCccccCcccC
Confidence            6789999                                  999999999998543

This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.

>TIGR01136 cysKM cysteine synthases

Probab=99.90  E-value=1.6e-23  Score=183.02  Aligned_cols=139  Identities=53%  Similarity=0.729  Sum_probs=113.3

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-------------------------------   49 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-------------------------------   49 (197)
                      |+.+|.++|.+.||++ |||+||||+|++||++|+     .+|++++++                               
T Consensus        45 ~~~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~-----~~G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~  118 (299)
T TIGR01136        45 MIEDAEKRGLLKPGDT-IIEATSGNTGIALAMVAA-----AKGYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKG  118 (299)
T ss_pred             HHHHHHHcCCCCCCCE-EEEeCCChHHHHHHHHHH-----HcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHH
Confidence            4778999999999998 999999999999999999     999999999                               


Q ss_pred             --------------------------eccccc-----------------------------------------------C
Q 043034           50 --------------------------PTRHLH-----------------------------------------------H   56 (197)
Q Consensus        50 --------------------------p~~h~~-----------------------------------------------p   56 (197)
                                                |.+|+.                                               |
T Consensus       119 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~  198 (299)
T TIGR01136       119 AIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEP  198 (299)
T ss_pred             HHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhcCCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEec
Confidence                                      011111                                               2


Q ss_pred             CCcceecccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCC
Q 043034           57 SEYVVLSHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEND  124 (197)
Q Consensus        57 ~~~~~~~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~  124 (197)
                      .++..+.+..++++.+++++            +|+++.|+|+|+++++|+|++++|+++|||||++++++++++++...+
T Consensus       199 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~e~ssaa~~a~~~~~~~~~~~~  278 (299)
T TIGR01136       199 AESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSDEDAIETARRLAREEGILVGISSGAAVAAALKLAKRLENA  278 (299)
T ss_pred             CCCccccCCCCCCccCCCCCCCCCCccCChhhCCEEEEECHHHHHHHHHHHHHHhCceEcchHHHHHHHHHHHHHhcCCC
Confidence            22222222233345566665            789999999999999999999999999999999999999999875445


Q ss_pred             CceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccC
Q 043034          125 RILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELF  179 (197)
Q Consensus       125 g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~  179 (197)
                      +++||+                                  ++||+|+||+++..|
T Consensus       279 ~~~vv~----------------------------------i~~d~g~ky~~~~~~  299 (299)
T TIGR01136       279 DKVIVA----------------------------------ILPDTGERYLSTGLF  299 (299)
T ss_pred             CCEEEE----------------------------------EECCCCccccCcccC
Confidence            889999                                  999999999998543

This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.

>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase

Probab=99.84  E-value=2.7e-20  Score=161.63  Aligned_cols=134  Identities=46%  Similarity=0.645  Sum_probs=108.9

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-----------------------eccc---c
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-----------------------PTRH---L   54 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-----------------------p~~h---~   54 (197)
                      +|..|.++|.++||++ ||++||||+|.+||++|+     .+|++++++                       +...   +
T Consensus        40 ~l~~a~~~g~~~~~~~-vv~~SsGN~g~alA~~a~-----~~G~~~~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~  113 (291)
T cd01561          40 MIEDAEKRGLLKPGTT-IIEPTSGNTGIGLAMVAA-----AKGYRFIIVMPETMSEEKRKLLRALGAEVILTPEAEADGM  113 (291)
T ss_pred             HHHHHHHcCCCCCCCE-EEEeCCChHHHHHHHHHH-----HcCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCH
Confidence            3678899999999998 999999999999999999     999999999                       1000   0


Q ss_pred             c-------------------------------------------------------------------------------
Q 043034           55 H-------------------------------------------------------------------------------   55 (197)
Q Consensus        55 ~-------------------------------------------------------------------------------   55 (197)
                      .                                                                               
T Consensus       114 ~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~V  193 (291)
T cd01561         114 KGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGV  193 (291)
T ss_pred             HHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCCCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence            0                                                                               


Q ss_pred             -CCCcceecccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC
Q 043034           56 -HSEYVVLSHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE  122 (197)
Q Consensus        56 -p~~~~~~~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~  122 (197)
                       |.++..+.+....++.++|+|            +|+++.|+|+|++++++.|++++|+++|||||++++++++++++..
T Consensus       194 e~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~epssa~a~a~~~~~~~~~~  273 (291)
T cd01561         194 DPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEAFAMARRLAREEGLLVGGSSGAAVAAALKLAKRLG  273 (291)
T ss_pred             ecCCCcccCCCCCCCCcCCCCCCCCCCCccCchhCceeEEECHHHHHHHHHHHHHHhCeeEcccHHHHHHHHHHHHHhcC
Confidence             222222212222345566766            7899999999999999999999999999999999999999998764


Q ss_pred             CCCceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccC
Q 043034          123 NDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLS  175 (197)
Q Consensus       123 ~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYls  175 (197)
                       ++++||+                                  ++||+|+||++
T Consensus       274 -~~~~vv~----------------------------------v~~~~g~ky~~  291 (291)
T cd01561         274 -PGKTIVT----------------------------------ILPDSGERYLS  291 (291)
T ss_pred             -CCCeEEE----------------------------------EECCCccccCC
Confidence             6789999                                  99999999986

CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.

>PRK06608 threonine dehydratase; Provisional

Probab=99.79  E-value=2.7e-19  Score=160.51  Aligned_cols=73  Identities=15%  Similarity=0.087  Sum_probs=63.4

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccceecccccCCCCCCccc
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCS  156 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~  156 (197)
                      +|+++.|+|+|+++++|+|++++|+++|||||++++|+++++++. .++++||+                          
T Consensus       251 ~d~~v~Vsd~e~~~a~~~l~~~~gi~vepssaa~laa~~~~~~~~-~~~~~Vv~--------------------------  303 (338)
T PRK06608        251 LDDFYLVEEYEIYYWTAWLTHLLKVICEPSSAINMVAVVNWLKTQ-SKPQKLLV--------------------------  303 (338)
T ss_pred             CCCEEEECHHHHHHHHHHHHHHcCcEEchHHHHHHHHHHhhchhh-cCCCeEEE--------------------------
Confidence            899999999999999999999999999999999999999988764 35789999                          


Q ss_pred             cccccceeeeccCC--ccccCcccCchhHH
Q 043034          157 LHEACHQFLLPSGG--ERYLSTELFDSITH  184 (197)
Q Consensus       157 ~~~~~~~~i~~d~g--~rYlst~~~~~~~~  184 (197)
                              ++++++  .+|+++.+.++|+.
T Consensus       304 --------v~tgg~~d~~~~~~~~~~~~~~  325 (338)
T PRK06608        304 --------ILSGGNIDPILYNELWKEDYLT  325 (338)
T ss_pred             --------EeCCCccCHHHHHHHHHHhhhc
Confidence                    898866  77888866666553

>PRK06721 threonine synthase; Reviewed

Probab=99.79  E-value=9.7e-19  Score=157.22  Aligned_cols=72  Identities=22%  Similarity=0.240  Sum_probs=63.4

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEEeecccccccceecccccCCCCCCcc
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVVSLISYKLYFSFCINSLVNQSPCPFC  155 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~  155 (197)
                      +|+++.|+|+|+++++|+|+++|||++|||||++++++++++++.. .++++||+                         
T Consensus       257 ~~~~~~V~d~e~~~a~~~la~~eGi~vepssgaalaa~~~~~~~~~~~~~~~Vv~-------------------------  311 (352)
T PRK06721        257 HGEIDMVSDEEILHAYRLLAKSEGVFAEPGSNASLAGVMKHVQSGKIKKGETVVA-------------------------  311 (352)
T ss_pred             CCEEEEECHHHHHHHHHHHHHhcCcccCchHHHHHHHHHHHHHcCCCCCCCeEEE-------------------------
Confidence            5789999999999999999999999999999999999999987532 35789999                         


Q ss_pred             ccccccceeeeccCCccccCcccCchh
Q 043034          156 SLHEACHQFLLPSGGERYLSTELFDSI  182 (197)
Q Consensus       156 ~~~~~~~~~i~~d~g~rYlst~~~~~~  182 (197)
                               ++||+|.||+.+.+.+.|
T Consensus       312 ---------v~~g~g~k~~~~~~~~~~  329 (352)
T PRK06721        312 ---------VLTGNGLKDPDIAISSNT  329 (352)
T ss_pred             ---------EeCCCCcCchHHHhhhcc
Confidence                     999999999988654555

>PRK06352 threonine synthase; Validated

Probab=99.76  E-value=3.7e-18  Score=153.62  Aligned_cols=64  Identities=17%  Similarity=0.268  Sum_probs=57.4

Q ss_pred             EEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEEeecccccccceecccccCCCCCCccccc
Q 043034           80 CFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLH  158 (197)
Q Consensus        80 iv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~  158 (197)
                      ++.|+|+|+++++|+|++++||++|||||++++|+++++++.. .++++||+                            
T Consensus       260 ~~~V~d~e~~~a~r~la~~eGi~vepssaaalAa~~~~~~~~~~~~~~~Vv~----------------------------  311 (351)
T PRK06352        260 IHSVTDDEIVNAYKKIAAQDGVFIEPGSAASLAGVIQHVANGTIKKGETVVC----------------------------  311 (351)
T ss_pred             EEEECHHHHHHHHHHHHhhcCceEchhHHHHHHHHHHHHHcCCCCCCCcEEE----------------------------
Confidence            8999999999999999999999999999999999999887422 35788999                            


Q ss_pred             cccceeeeccCCccccCcc
Q 043034          159 EACHQFLLPSGGERYLSTE  177 (197)
Q Consensus       159 ~~~~~~i~~d~g~rYlst~  177 (197)
                            ++||+|.||+++.
T Consensus       312 ------v~tg~G~~~~~~~  324 (351)
T PRK06352        312 ------VFTGNGLKDPDTA  324 (351)
T ss_pred             ------EeCCCCcCChHHH
Confidence                  9999999998875

>PRK07409 threonine synthase; Validated

Probab=99.74  E-value=1.5e-17  Score=148.96  Aligned_cols=53  Identities=26%  Similarity=0.310  Sum_probs=47.1

Q ss_pred             eeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEE
Q 043034           78 EYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVV  130 (197)
Q Consensus        78 Deiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt  130 (197)
                      |+++.|+|+|+++++|+|++++|+++|||||++++++++++++.. .++++||+
T Consensus       262 ~~~v~Vsd~e~~~a~~~l~~~egi~v~pssa~alaa~~~~~~~~~~~~~~~VV~  315 (353)
T PRK07409        262 GLIDAVTDEEILEAYRLLARKEGVFCEPASAASVAGLLKAIRAGKIPEGSTVVC  315 (353)
T ss_pred             CEEEEECHHHHHHHHHHHHHhCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEE
Confidence            468999999999999999999999999999999999999887621 35778888

>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia

Probab=99.73  E-value=2.5e-17  Score=146.18  Aligned_cols=53  Identities=23%  Similarity=0.156  Sum_probs=46.3

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHh-----c--CCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVA-----K--IPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA-----~--~~~~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++|+|++++||++|||||++++|+++..     +  ++ .++++||+
T Consensus       237 ~~~~v~Vsd~e~~~a~~~l~~~~gi~~~~ssaa~laa~~~~~~~~~~~~~~~-~~~~~Vv~  296 (316)
T cd06448         237 NIKSEVVSDRDAVQACLRFADDERILVEPACGAALAVVYSGKILDLQLEVLL-TPLDNVVV  296 (316)
T ss_pred             CCeEEEECHHHHHHHHHHHHHHcCceechhHHHHHHHHHhCcchhhhccccc-CCCCeEEE
Confidence            688999999999999999999999999999999999998632     1  12 36789999

>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate

Probab=99.71  E-value=1e-16  Score=141.01  Aligned_cols=54  Identities=30%  Similarity=0.291  Sum_probs=48.4

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt  130 (197)
                      .|+++.|+|+|+++++|+|++++|+++|||||++++++++++++.. .++++||+
T Consensus       261 ~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~l~~~~~~~~~~~Vv~  315 (324)
T cd01563         261 GGTAVAVSDEEILEAQKLLARTEGIFVEPASAASLAGLKKLREEGIIDKGERVVV  315 (324)
T ss_pred             CCEEEEECHHHHHHHHHHHHhcCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEE
Confidence            3689999999999999999999999999999999999999987632 35788999

It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.

>PRK07334 threonine dehydratase; Provisional

Probab=99.71  E-value=1.9e-17  Score=151.04  Aligned_cols=52  Identities=15%  Similarity=0.024  Sum_probs=48.3

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++|+|++++|+++|||||++++|++++.++.  ++++||+
T Consensus       249 ~d~~v~V~d~e~~~a~~~l~~~~gi~v~~s~a~~~aa~~~~~~~~--~~~~vv~  300 (403)
T PRK07334        249 VDDILLVSEADIEQAVSLLLEIEKTVVEGAGAAGLAALLAYPERF--RGRKVGL  300 (403)
T ss_pred             CCeEEEECHHHHHHHHHHHHHhcCCEEechHHHHHHHHHhCchhc--CCCeEEE
Confidence            899999999999999999999999999999999999999877654  5779999

>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions

Probab=99.71  E-value=7.5e-17  Score=145.68  Aligned_cols=65  Identities=35%  Similarity=0.427  Sum_probs=60.9

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccceecccccCCCCCCccc
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCS  156 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~  156 (197)
                      +|+++.|+|+|+++++|+|+++|||++|||||++++++++++++. +++++||+                          
T Consensus       300 ~d~~v~V~d~e~~~a~r~la~~eGi~~epssgaalAa~~~~~~~~-~~~~~Vv~--------------------------  352 (365)
T cd06446         300 RVEYVAVTDEEALEAFKLLARTEGIIPALESSHAIAYAIKLAKKL-GKEKVIVV--------------------------  352 (365)
T ss_pred             CceEEEeChHHHHHHHHHHHHhcCceeCccchHHHHHHHHHHHhc-CCCCeEEE--------------------------
Confidence            578999999999999999999999999999999999999999876 36789999                          


Q ss_pred             cccccceeeeccCCccccCc
Q 043034          157 LHEACHQFLLPSGGERYLST  176 (197)
Q Consensus       157 ~~~~~~~~i~~d~g~rYlst  176 (197)
                              |+||+|.||++|
T Consensus       353 --------i~~g~G~k~~~~  364 (365)
T cd06446         353 --------NLSGRGDKDLQT  364 (365)
T ss_pred             --------EeCCCCcccccc
Confidence                    999999999987

In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.

>PRK13028 tryptophan synthase subunit beta; Provisional

Probab=99.71  E-value=8.7e-17  Score=148.45  Aligned_cols=53  Identities=26%  Similarity=0.299  Sum_probs=49.3

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      .|+++.|+|+||++++++|+++|||++|+|||+++++++++++++. ++++||+
T Consensus       328 ~~~~v~VtD~eal~a~~~La~~eGIi~~~~sa~alA~a~~~a~~l~-~~~~VVv  380 (402)
T PRK13028        328 RVEYVTATDEEALDAFFLLSRTEGIIPALESSHAVAYAIKLAPELS-KDETILV  380 (402)
T ss_pred             CcEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHHhhhhcC-CCCeEEE
Confidence            5899999999999999999999999999999999999999998864 6788888

>PLN02618 tryptophan synthase, beta chain

Probab=99.68  E-value=2.3e-16  Score=146.11  Aligned_cols=53  Identities=28%  Similarity=0.365  Sum_probs=49.5

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|+++.|+|+||++++++|+++|||++|+|||+++++|+++++++. ++++||+
T Consensus       337 ~~~~v~VtD~Eal~a~~~La~~eGIi~~~sSa~a~a~a~~~a~~l~-~~~~iVv  389 (410)
T PLN02618        337 RAEYYSVTDEEALEAFQRLSRLEGIIPALETSHALAYLEKLCPTLP-DGTKVVV  389 (410)
T ss_pred             CcEEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHHHhHhcC-CCCEEEE
Confidence            7899999999999999999999999999999999999999998864 6777888

>TIGR00263 trpB tryptophan synthase, beta subunit

Probab=99.67  E-value=2.6e-16  Score=143.51  Aligned_cols=65  Identities=25%  Similarity=0.333  Sum_probs=60.1

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccceecccccCCCCCCccc
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCS  156 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~  156 (197)
                      +|+++.|+|+|+++++|+|+++|||++|+|||+++++++++++++. ++++||+                          
T Consensus       316 ~~~~v~Vsd~e~~~a~~~la~~egi~~~~ssaaalaa~~~~~~~l~-~~~~Vv~--------------------------  368 (385)
T TIGR00263       316 RATYEAITDDEALEAFKLLSRNEGIIPALESSHALAHLEKIAPTLP-KDQIVVV--------------------------  368 (385)
T ss_pred             CeEEEEECHHHHHHHHHHHHHhcCCeechHHHHHHHHHHHHHHhCC-CCCeEEE--------------------------
Confidence            6789999999999999999999999999999999999999988763 6889999                          


Q ss_pred             cccccceeeeccCCccccCc
Q 043034          157 LHEACHQFLLPSGGERYLST  176 (197)
Q Consensus       157 ~~~~~~~~i~~d~g~rYlst  176 (197)
                              ++||+|.+|+++
T Consensus       369 --------i~~g~G~~d~~~  380 (385)
T TIGR00263       369 --------NLSGRGDKDIFT  380 (385)
T ss_pred             --------EeCCCCcCCHHH
Confidence                    999999999886

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.

>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia

Probab=99.67  E-value=1.1e-16  Score=147.79  Aligned_cols=51  Identities=18%  Similarity=0.116  Sum_probs=46.1

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIV  129 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VV  129 (197)
                      +|+++.|+|+|+++++|+|++++|+++|||||++++|+++++++.  ++++-|
T Consensus       331 vd~~v~Vsd~ei~~a~r~La~~~gi~vepSgAa~lAAl~~~~~~~--~~~~~~  381 (404)
T cd06447         331 LSGIYTVEDDELYRLLAMLKDSENIEVEPSAAAGFTGPAQVLSEA--EGKRYV  381 (404)
T ss_pred             CCcEEEECHHHHHHHHHHHHHHcCcEEeHHHHHHHHHHHHHHHhh--hHHHhc
Confidence            999999999999999999999999999999999999999999875  344443

D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.

>PRK04346 tryptophan synthase subunit beta; Validated

Probab=99.66  E-value=5.6e-16  Score=142.91  Aligned_cols=53  Identities=28%  Similarity=0.382  Sum_probs=48.6

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      .|+++.|+|+||++++++|+++|||++|++|++++++++++++++. ++++||+
T Consensus       324 ~~~~v~VtD~eal~a~~~L~~~eGIi~~~esa~AlA~a~kla~~l~-~~~~Vvv  376 (397)
T PRK04346        324 RAEYVSITDDEALEAFQLLSRLEGIIPALESSHALAYALKLAPTLG-KDQIIVV  376 (397)
T ss_pred             CeEEEEECHHHHHHHHHHHHHHcCCEeccHHHHHHHHHHHhhhhcC-CCCeEEE
Confidence            6799999999999999999999999999999999999999988763 5677777

>PRK08197 threonine synthase; Validated

Probab=99.66  E-value=5e-16  Score=141.42  Aligned_cols=65  Identities=22%  Similarity=0.278  Sum_probs=58.3

Q ss_pred             eeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEEeecccccccceecccccCCCCCCccc
Q 043034           78 EYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVVSLISYKLYFSFCINSLVNQSPCPFCS  156 (197)
Q Consensus        78 Deiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~  156 (197)
                      +.++.|+|+|+++++++|+++|||++|||||++++++++++++.. .++++||+                          
T Consensus       321 g~~v~V~d~e~~~a~~~la~~eGi~vepssaaala~~~~l~~~~~~~~~~~Vv~--------------------------  374 (394)
T PRK08197        321 GCAIAVSDDAILAAQRELAREEGLFACPEGAATFAAARQLRESGWLKGDERVVL--------------------------  374 (394)
T ss_pred             CEEEEeCHHHHHHHHHHHHhcCCceECchHHHHHHHHHHHHHcCCcCCCCcEEE--------------------------
Confidence            457999999999999999999999999999999999999988642 35789999                          


Q ss_pred             cccccceeeeccCCccccCc
Q 043034          157 LHEACHQFLLPSGGERYLST  176 (197)
Q Consensus       157 ~~~~~~~~i~~d~g~rYlst  176 (197)
                              +++++|.||+++
T Consensus       375 --------v~tG~g~k~~~~  386 (394)
T PRK08197        375 --------FNTGSGLKYPDT  386 (394)
T ss_pred             --------EeCCCCcCchhh
Confidence                    999999999876

>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

Probab=99.66  E-value=5e-16  Score=151.88  Aligned_cols=64  Identities=20%  Similarity=0.168  Sum_probs=51.0

Q ss_pred             ceeE--EEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCC---CceEEE-eecccccccc
Q 043034           77 HEYC--FQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEND---RILIVV-SLISYKLYFS  140 (197)
Q Consensus        77 IDei--v~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~---g~~VVt-~~~~~d~~~s  140 (197)
                      ++++  +.|+|+||++++|+|++.|||++|+|||+|+++|+++++++...   +++||+ ++||||||++
T Consensus       598 ~~rv~~~~vtD~eal~a~~~La~~EGIipa~eS~hAva~a~~~a~~~~~~~~~~~~Vv~~lsg~GdKdl~  667 (695)
T PRK13802        598 IGRVNYSWATDEEAMNAFKDLCETEGIIPAIESSHAVAGAYKAAADLKAKGYEHPVMIVNISGRGDKDMN  667 (695)
T ss_pred             cCCeEEEEECHHHHHHHHHHHHHHcCccccchHHHHHHHHHHHHHhcccccCCCCEEEEEECCCCcCCHH
Confidence            4555  89999999999999999999999999999999999999876421   446777 2444444444

>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen

Probab=99.66  E-value=4.4e-16  Score=134.92  Aligned_cols=52  Identities=21%  Similarity=0.099  Sum_probs=49.0

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++|+|+++||+++|||||++++++++++++.  ++++||+
T Consensus       245 ~~~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~a~a~~~~~~~~~--~~~~vv~  296 (304)
T cd01562         245 VDDVVTVSEDEIAAAMLLLFEREKLVAEPAGALALAALLSGKLDL--KGKKVVV  296 (304)
T ss_pred             CCeEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHhCcccc--CCCeEEE
Confidence            789999999999999999999999999999999999999998875  5788999

Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.

>PLN02970 serine racemase

Probab=99.65  E-value=8.9e-16  Score=136.75  Aligned_cols=54  Identities=15%  Similarity=0.055  Sum_probs=45.5

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCC---CCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIP---ENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~---~~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++|+|++++|+++|||||++++++++.+.+.   ..++++||+
T Consensus       254 ~d~~v~V~d~e~~~a~~~la~~~gi~ve~s~aa~laaa~~~~~~~~~~~~~~~~vv~  310 (328)
T PLN02970        254 VDDVITVDDKEIIEAMKLCYERLKVVVEPSGAIGLAAALSDSFRSNPAWKGCKNVGI  310 (328)
T ss_pred             CCEEEEECHHHHHHHHHHHHHhcCcEEeHHHHHHHHHHHhCcccccccccCCCeEEE
Confidence            799999999999999999999999999999999999988755431   112467777

>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase

Probab=99.65  E-value=7.5e-16  Score=143.36  Aligned_cols=44  Identities=18%  Similarity=0.156  Sum_probs=42.3

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcC
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKI  120 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~  120 (197)
                      +|+++.|+|+|+++++++|++++||++|||||++++++.++++.
T Consensus       349 vd~vv~VsD~ei~~a~~~L~~~egi~vEpSsaa~laa~~~l~~~  392 (431)
T TIGR02035       349 LSGIYTVDDYTLYDLLRILAESEGKRLEPSALAGMEGPVRLLKY  392 (431)
T ss_pred             CCeEEEECHHHHHHHHHHHHHHcCCeEcHHHHHHHHHHHHHHhh
Confidence            89999999999999999999999999999999999999988875

This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.

>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions

Probab=99.65  E-value=2e-15  Score=127.30  Aligned_cols=122  Identities=36%  Similarity=0.390  Sum_probs=88.6

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-ec----------------ccccC-------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-PT----------------RHLHH-------   56 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-p~----------------~h~~p-------   56 (197)
                      |+..|+++|.+ |+++ ||++||||+|.++|++|+     .+|+|++++ |.                .+..+       
T Consensus        38 ~l~~a~~~g~~-~~~~-vv~~ssGN~g~alA~~a~-----~~g~~~~v~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~  110 (244)
T cd00640          38 LILLAEEEGKL-PKGV-IIESTGGNTGIALAAAAA-----RLGLKCTIVMPEGASPEKVAQMRALGAEVVLVPGDFDDAI  110 (244)
T ss_pred             HHHHHHHcCCC-CCCE-EEEeCCcHHHHHHHHHHH-----HcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHH
Confidence            46788999988 8887 999999999999999999     999999998 10                00000       


Q ss_pred             ----------CCcceecc-------------------cccc---cccccccc-----------------------ce-eE
Q 043034           57 ----------SEYVVLSH-------------------VVMG---KHLIQASC-----------------------HE-YC   80 (197)
Q Consensus        57 ----------~~~~~~~~-------------------~~~~---~~~ieGiG-----------------------ID-ei   80 (197)
                                .+...+..                   ...+   .+.+-..|                       ++ ++
T Consensus       111 ~~a~~~~~~~~~~~~~~~~~n~~~~~g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~~~  190 (244)
T cd00640         111 ALAKELAEEDPGAYYVNQFDNPANIAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEPEV  190 (244)
T ss_pred             HHHHHHHHhCCCCEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEeeeE
Confidence                      00000000                   0000   01111111                       22 68


Q ss_pred             EEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           81 FQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        81 v~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +.|+|+|+++++++|++++|+++|||||++++++++++++. .++++||+
T Consensus       191 ~~v~d~~~~~a~~~l~~~~gi~~~pssa~~~aa~~~~~~~~-~~~~~vv~  239 (244)
T cd00640         191 VTVSDEEALEAIRLLAREEGILVEPSSAAALAAALKLAKKL-GKGKTVVV  239 (244)
T ss_pred             EEECHHHHHHHHHHHHHHcCceECHhHHHHHHHHHHHHHhc-CCCCEEEE
Confidence            89999999999999999999999999999999999999886 35778888

This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy

>PRK08246 threonine dehydratase; Provisional

Probab=99.64  E-value=9.9e-16  Score=135.51  Aligned_cols=53  Identities=25%  Similarity=0.153  Sum_probs=47.0

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++++|++++|+++|||||++++++++...+. .++++||+
T Consensus       245 ~~~~~~Vsd~e~~~a~~~l~~~egi~~e~s~aa~lAa~~~~~~~~-~~~~~vv~  297 (310)
T PRK08246        245 VVTSVLVSDEAIIAARRALWEELRLAVEPGAATALAALLSGAYVP-APGERVAV  297 (310)
T ss_pred             CCeEEEECHHHHHHHHHHHHHHcCceeehHHHHHHHHHHhCCccc-cCCCeEEE
Confidence            899999999999999999999999999999999999887655443 35778988

>PRK06110 hypothetical protein; Provisional

Probab=99.63  E-value=1.6e-15  Score=134.44  Aligned_cols=52  Identities=12%  Similarity=0.052  Sum_probs=48.0

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++|+|++++|+++|||||+++++++++.++.  ++++||+
T Consensus       249 ~d~~~~Vsd~e~~~a~~~l~~~~gi~~e~ssaa~laa~~~~~~~~--~~~~Vv~  300 (322)
T PRK06110        249 ADRIVRVTDDEVAAAMRAYFTDTHNVAEGAGAAALAAALQERERL--AGKRVGL  300 (322)
T ss_pred             CCeEEEECHHHHHHHHHHHHHHcCcEEehHHHHHHHHHHhChhhh--CCCcEEE
Confidence            899999999999999999999999999999999999999987654  5778888

>PRK07048 serine/threonine dehydratase; Validated

Probab=99.63  E-value=1.5e-15  Score=134.30  Aligned_cols=52  Identities=17%  Similarity=0.123  Sum_probs=48.0

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++|+|++++|+++|||||+++++++++.++.  ++++||+
T Consensus       252 ~d~~~~V~d~e~~~a~~~l~~~~gi~~eps~a~~laa~~~~~~~~--~~~~vv~  303 (321)
T PRK07048        252 VDDIVTVSDAELVDAMRFFAERMKIVVEPTGCLGAAAALRGKVPL--KGKRVGV  303 (321)
T ss_pred             CCceEEECHHHHHHHHHHHHHhCCceeccHHHHHHHHHHhCchhc--CCCeEEE
Confidence            899999999999999999999999999999999999999877653  5778888

>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional

Probab=99.63  E-value=1.8e-15  Score=145.65  Aligned_cols=53  Identities=25%  Similarity=0.286  Sum_probs=48.5

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      .++++.|+|+||++++++|++.|||++|+|||+++++++++++++. ++++||+
T Consensus       536 ~~~~v~Vtd~ea~~a~~~La~~eGi~~~~ssa~alA~~~~~~~~~~-~~~~Vvv  588 (610)
T PRK13803        536 RAIYTSVTDEEALDAFKLLAKLEGIIPALESSHALAYLKEGRKKFK-KKDIVIV  588 (610)
T ss_pred             CeEEEEECHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHHhchhcC-CCCeEEE
Confidence            4579999999999999999999999999999999999999987764 5778888

>PRK06815 hypothetical protein; Provisional

Probab=99.62  E-value=2.2e-15  Score=133.32  Aligned_cols=52  Identities=25%  Similarity=0.210  Sum_probs=48.8

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++++|++++||++|||||++++++++++++.  ++++||+
T Consensus       249 ~~~~~~V~d~e~~~a~~~la~~~gi~vepssg~alaa~~~~~~~~--~~~~vv~  300 (317)
T PRK06815        249 IDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGVALAAALKLAPRY--QGKKVAV  300 (317)
T ss_pred             CCeEEEECHHHHHHHHHHHHHhcCCeEecHHHHHHHHHHhCchhc--CCCcEEE
Confidence            799999999999999999999999999999999999999988764  5789999

>PRK08329 threonine synthase; Validated

Probab=99.62  E-value=4.7e-15  Score=133.20  Aligned_cols=52  Identities=25%  Similarity=0.293  Sum_probs=45.4

Q ss_pred             eeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEE
Q 043034           78 EYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVV  130 (197)
Q Consensus        78 Deiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt  130 (197)
                      +.++.|+|+|+++++++|++ +||++|||||++++++++++++.. .++++||+
T Consensus       285 g~~~~V~d~e~~~a~~~l~~-~Gi~vepssa~a~Aa~~~l~~~g~i~~~~~Vv~  337 (347)
T PRK08329        285 GFCISVGEEETRAALHWLRR-MGFLVEPTSAVALAAYWKLLEEGLIEGGSKVLL  337 (347)
T ss_pred             CEEEEECHHHHHHHHHHHHh-cCceECccHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence            45799999999999999996 899999999999999999998743 35677777

>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme

Probab=99.61  E-value=3.3e-15  Score=138.38  Aligned_cols=73  Identities=25%  Similarity=0.210  Sum_probs=61.6

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccceecccccCCCCCCccc
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCS  156 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~  156 (197)
                      +++++.|+|+|+++++|+|+++|||++|||||++++++++++++...+++..|+                          
T Consensus       344 ~~~~~~V~d~e~~~a~r~la~~eGi~~epssa~alaaai~~a~~~~~~~~~~vv--------------------------  397 (419)
T TIGR01415       344 IVEARAYDQEEAFEAAVIFAKTEGIVPAPESAHAIAAAIDEARKCRETGEEKVI--------------------------  397 (419)
T ss_pred             ceEEEEECHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhcCcCCCCeEE--------------------------
Confidence            356789999999999999999999999999999999999999876433566666                          


Q ss_pred             cccccceeeeccCCccccCcccCchhH
Q 043034          157 LHEACHQFLLPSGGERYLSTELFDSIT  183 (197)
Q Consensus       157 ~~~~~~~~i~~d~g~rYlst~~~~~~~  183 (197)
                              +++++|..|++...|++++
T Consensus       398 --------v~~lsG~G~~d~~~y~~~~  416 (419)
T TIGR01415       398 --------LFNLSGHGLLDLKAYAKYL  416 (419)
T ss_pred             --------EEEcCCCCcCCHHHHHHHh
Confidence                    6778899999887776654

This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.

>PLN02569 threonine synthase

Probab=99.60  E-value=5.3e-15  Score=139.38  Aligned_cols=52  Identities=21%  Similarity=0.167  Sum_probs=45.9

Q ss_pred             ee-EEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEE
Q 043034           78 EY-CFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVV  130 (197)
Q Consensus        78 De-iv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt  130 (197)
                      |. ++.|+|+|+++++++ ++++||++|||||++++|+++++++.. .++.+||+
T Consensus       379 ~g~~v~VsDeEi~~a~~~-a~~~Gi~vepssAaalAal~kl~~~g~i~~~~~VV~  432 (484)
T PLN02569        379 NGIVEEATEEELMDAQAE-ADKTGMFLCPHTGVALAALKKLRASGVIGPTDRTVV  432 (484)
T ss_pred             CCEEEEECHHHHHHHHHH-HHHCCcEECchHHHHHHHHHHHHHcCCCCCCCcEEE
Confidence            44 699999999999999 999999999999999999999988642 35778999

>PRK08638 threonine dehydratase; Validated

Probab=99.60  E-value=5.1e-15  Score=132.77  Aligned_cols=54  Identities=15%  Similarity=0.061  Sum_probs=42.5

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++++|++++|+++|+|+|++++++.....+...++++||+
T Consensus       255 ~d~~v~Vsd~ea~~a~~~l~~~~gi~~e~sgA~~~Aa~~~~~~~~~~~~~~vv~  308 (333)
T PRK08638        255 VDDIVLVSEDEIRNAMKDLIQRNKVVTEGAGALATAALLSGKLDQYIQNKKVVA  308 (333)
T ss_pred             CCeEEEECHHHHHHHHHHHHHHcCCeechhHHHHHHHHHhCCcccccCCCcEEE
Confidence            899999999999999999999999999998777765554322111125778999

>PRK08198 threonine dehydratase; Provisional

Probab=99.59  E-value=5.3e-15  Score=134.42  Aligned_cols=52  Identities=19%  Similarity=0.089  Sum_probs=46.7

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++++|++++|+++|||+|++++|++++.+.  .++++||+
T Consensus       250 ~d~~v~V~d~e~~~a~~~l~~~~g~~~e~sga~~lAal~~~~~~--~~~~~vv~  301 (404)
T PRK08198        250 VDDVVTVSDEEIARAILLLLERAKLVVEGAGAVSVAALLSGKLD--VKGKKVVA  301 (404)
T ss_pred             CCEEEEECHHHHHHHHHHHHHhcCeEEehHHHHHHHHHHhchhh--cCCCeEEE
Confidence            89999999999999999999999999999999999888887632  25788988

>PRK07591 threonine synthase; Validated

Probab=99.58  E-value=1.3e-14  Score=133.82  Aligned_cols=53  Identities=25%  Similarity=0.245  Sum_probs=47.2

Q ss_pred             eeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEE
Q 043034           78 EYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVV  130 (197)
Q Consensus        78 Deiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt  130 (197)
                      ++++.|+|+|++++++.|++++||++|||||++++++++++++.. .++++||+
T Consensus       331 g~~v~Vsd~ei~~a~~~la~~eGi~~epssaaalAal~~l~~~g~i~~~~~VV~  384 (421)
T PRK07591        331 GAIEDVTDEEIIEGIKLLARTEGIFTETAGGVTVAVLKKLVEAGKIDPDEETVV  384 (421)
T ss_pred             CEEEEECHHHHHHHHHHHHhcCCeeecchHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence            369999999999999999999999999999999999999988532 36778888

>PRK06260 threonine synthase; Validated

Probab=99.57  E-value=1.6e-14  Score=131.66  Aligned_cols=53  Identities=30%  Similarity=0.293  Sum_probs=47.5

Q ss_pred             eeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEE
Q 043034           78 EYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVV  130 (197)
Q Consensus        78 Deiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt  130 (197)
                      ++++.|+|+|+++++++|++++|+++|||||++++|+++++++.. .++++||+
T Consensus       308 g~~v~V~d~e~~~a~~~la~~eGi~vepssaaalAa~~~l~~~g~i~~~~~VV~  361 (397)
T PRK06260        308 GTAEAVSDEEILDAQKLLARKEGIGVEPASAASVAGLIKLVEEGVIDKDERVVC  361 (397)
T ss_pred             CEEEEECHHHHHHHHHHHHHhCCCeeCchHHHHHHHHHHHHHcCCCCCCCeEEE
Confidence            579999999999999999999999999999999999999988642 35778888

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=99.57  E-value=1.5e-14  Score=130.42  Aligned_cols=52  Identities=19%  Similarity=0.105  Sum_probs=46.5

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|+++.|+|+|+.+++++|++++|+++|||||++++++++....  .++++||+
T Consensus       228 vd~~v~V~d~e~~~a~~~l~~~~gi~~e~s~a~~laa~~~~~~~--~~~~~vv~  279 (380)
T TIGR01127       228 VDDVVTVDEEEIANAIYLLLERHKILAEGAGAAGVAALLEQKVD--VKGKKIAV  279 (380)
T ss_pred             CCEEEEECHHHHHHHHHHHHHhcCeEechHHHHHHHHHHhCccc--cCCCeEEE
Confidence            89999999999999999999999999999999999999875433  25778888

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK06382 threonine dehydratase; Provisional

Probab=99.56  E-value=1.2e-14  Score=132.95  Aligned_cols=52  Identities=13%  Similarity=0.121  Sum_probs=43.8

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++++|++++|+++|||||++++|+++...  ..++++||+
T Consensus       253 ~d~~v~V~d~ei~~a~~~l~~~~gi~~epsga~~laal~~~~~--~~~~~~Vv~  304 (406)
T PRK06382        253 VDDIVTVTEESVSKAIYKLFEREKIVAEPSGAVGLAAIMEGKV--DVKGKKVAI  304 (406)
T ss_pred             CCEEEEECHHHHHHHHHHHHHHcCceechHHHHHHHHHHhccc--cCCCCEEEE
Confidence            8999999999999999999999999999999888876654322  235778888

>PRK08206 diaminopropionate ammonia-lyase; Provisional

Probab=99.56  E-value=1.4e-14  Score=132.95  Aligned_cols=54  Identities=13%  Similarity=0.099  Sum_probs=46.6

Q ss_pred             ceeEEEcCcHHHHHHHHHHHH----HhCCeeeehhHHHHHHHHHHhcC---------CC-CCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAH----KEGLLVGISSDAAAAASIKVAKI---------PE-NDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr----~EGI~VG~SSGAaLAAAlklA~~---------~~-~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++|+|++    ++|+++|||||++++|+++++++         .. .++++||+
T Consensus       310 ~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vepsgAa~lAa~~~~~~~~~~~~~~~~~~i~~~~~Vv~  377 (399)
T PRK08206        310 ADAFISCPDEVAALGMRILANPLGGDPPIVSGESGAVGLGALAALMTDPDYQELREKLGLDEDSRVLL  377 (399)
T ss_pred             CCEEEEECHHHHHHHHHHHhcccCCCCCeeecchHHHHHHHHHHHHhcchhhHHHHhcCCCCCCEEEE
Confidence            799999999999999999996    78999999999999999976522         11 35788999

>PRK12391 tryptophan synthase subunit beta; Reviewed

Probab=99.56  E-value=1.8e-14  Score=133.97  Aligned_cols=73  Identities=23%  Similarity=0.217  Sum_probs=59.6

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccceecccccCCCCCCccc
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCS  156 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~  156 (197)
                      +++++.|+|+|+++++++|++.|||++|||||++++++++++++....++..++                          
T Consensus       353 ~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss~~alaaa~~~a~~~~~~~~~~~i--------------------------  406 (427)
T PRK12391        353 LIEARAYPQTEVFEAAVLFARTEGIVPAPESSHAIAAAIDEALKAKEEGEEKVI--------------------------  406 (427)
T ss_pred             ceEEEEECHHHHHHHHHHHHHHcCCeechHHHHHHHHHHHHHHhccccCCCCEE--------------------------
Confidence            357789999999999999999999999999999999999998763212233345                          


Q ss_pred             cccccceeeeccCCccccCcccCchhH
Q 043034          157 LHEACHQFLLPSGGERYLSTELFDSIT  183 (197)
Q Consensus       157 ~~~~~~~~i~~d~g~rYlst~~~~~~~  183 (197)
                              +++++|.+|+++..|++|+
T Consensus       407 --------v~~lsG~G~~d~~~y~~~l  425 (427)
T PRK12391        407 --------LFNLSGHGLLDLAAYDAYL  425 (427)
T ss_pred             --------EEEeCCCCCCCHHHHHHHh
Confidence                    5568899999988887764

>PRK02991 D-serine dehydratase; Provisional

Probab=99.55  E-value=3e-14  Score=132.96  Aligned_cols=54  Identities=22%  Similarity=0.207  Sum_probs=46.7

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCC------C-C---CCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIP------E-N---DRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~------~-~---~g~~VVt  130 (197)
                      +|+++.|+|+|+++++++|++++|+++|||||++++++++++++.      . .   ++++||+
T Consensus       354 vd~~v~VsD~ei~~a~~~L~~~~gi~vEpS~AaalAa~~~l~~~~~~~~~~~l~~~~~~~~vv~  417 (441)
T PRK02991        354 LDGVYTVSDETLYRLLGLLADTEGIRLEPSALAGMAGPVRVCASVAYLQRHGLSEQLKNATHLV  417 (441)
T ss_pred             CCeEEEECHHHHHHHHHHHHHhcCceeeHHHHHHHHHHHHHHhCHHHHHHcCCccccCCCEEEE
Confidence            899999999999999999999999999999999999998766531      1 1   4677777

>PRK06381 threonine synthase; Validated

Probab=99.54  E-value=5.2e-14  Score=123.99  Aligned_cols=51  Identities=31%  Similarity=0.283  Sum_probs=46.0

Q ss_pred             eEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           79 YCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        79 eiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +++.|+|+|+++++|+|+++|||++|||||++++++++++++.. .+++||+
T Consensus       262 ~~~~v~d~e~~~a~~~la~~egi~~epssa~alaa~~~~~~~~~-~~~~vv~  312 (319)
T PRK06381        262 YAFGFSDDEMVKYAELLRRMEGLNALPASASALAALVKYLKKNG-VNDNVVA  312 (319)
T ss_pred             EEEEECHHHHHHHHHHHHHhCCcccCchHHHHHHHHHHHHHcCC-CCCcEEE
Confidence            79999999999999999999999999999999999999998753 2467777

>PRK08813 threonine dehydratase; Provisional

Probab=99.53  E-value=7.1e-14  Score=127.08  Aligned_cols=48  Identities=23%  Similarity=0.107  Sum_probs=42.7

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++++|++++|+++|||||++++|++++      ++++||+
T Consensus       256 vd~vv~Vsd~ei~~a~~~l~~~~gl~vE~aga~alAa~~~~------~~~~v~~  303 (349)
T PRK08813        256 LDDVVIVREAELRETLVRLALEEHVIAEGAGALALAAGRRV------SGKRKCA  303 (349)
T ss_pred             CCeEEEECHHHHHHHHHHHHHHcCcEEEEcHHHHHHHHHHh------CCCCEEE
Confidence            89999999999999999999999999999999999998763      2445655

>TIGR00260 thrC threonine synthase

Probab=99.53  E-value=1.2e-13  Score=121.76  Aligned_cols=54  Identities=28%  Similarity=0.304  Sum_probs=47.9

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++|+|++++||++|||||++++++++++++.. .++++||+
T Consensus       263 ~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~~~~~~~~~~~~~vv~  317 (328)
T TIGR00260       263 NGNAEDVSDEEILEAIKLLAREEGYFVEPHSAVSVAALLKLVEKGTADPAERVVC  317 (328)
T ss_pred             CCcEEecCHHHHHHHHHHHHHhcCeeECchHHHHHHHHHHHHhCCCCCCCCcEEE
Confidence            5789999999999999999999999999999999999999987632 35677777

Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.

>PRK07476 eutB threonine dehydratase; Provisional

Probab=99.52  E-value=6.9e-14  Score=124.05  Aligned_cols=52  Identities=17%  Similarity=0.053  Sum_probs=44.2

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++++|++++|+++||||++++++.++.  +...++++||+
T Consensus       249 ~d~~~~V~d~e~~~a~~~l~~~~gi~ve~a~a~~laal~~~--~~~~~~~~Vvv  300 (322)
T PRK07476        249 LDDVVLLDEAEIAAGIRHAYREERLVVEGAGAVGIAALLAG--KIAARDGPIVV  300 (322)
T ss_pred             CCeEEEECHHHHHHHHHHHHHhcCceEeChhHHHHHHHHhC--CcccCCCcEEE
Confidence            89999999999999999999999999999999999988743  22223467887

>TIGR02079 THD1 threonine dehydratase

Probab=99.52  E-value=6e-14  Score=128.98  Aligned_cols=62  Identities=13%  Similarity=0.035  Sum_probs=51.5

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccc
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFS  140 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s  140 (197)
                      +|+++.|+|+|+++++++|++++|+++|||||++++|++++.++.  ++++||++.-+|.-|++
T Consensus       248 vd~vv~V~d~e~~~a~~~l~~~~gi~ve~agaa~lAa~~~~~~~~--~~~~Vv~ilsGgn~d~~  309 (409)
T TIGR02079       248 PDEVTLVPEGAVCTTILDLYNLEGIVAEPAGALSIAALERLGEEI--KGKTVVCVVSGGNNDIE  309 (409)
T ss_pred             CCcEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhhc--CCCeEEEEECCCCCCHH
Confidence            899999999999999999999999999999999999999877653  57788883223444443

This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.

>PRK08639 threonine dehydratase; Validated

Probab=99.50  E-value=1.5e-13  Score=126.53  Aligned_cols=62  Identities=15%  Similarity=0.030  Sum_probs=51.3

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccc
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFS  140 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s  140 (197)
                      +|+++.|+|+|+++++++|++++|+++|||||++++|+++++++.  ++++||++.-+|..|++
T Consensus       259 vd~~v~V~d~ei~~a~~~l~~~~gi~~e~sga~~lAal~~~~~~~--~~~~vv~v~sGgn~d~~  320 (420)
T PRK08639        259 VDDVVLVPEGAVCTTILELYNKEGIVAEPAGALSIAALELYKDEI--KGKTVVCVISGGNNDIE  320 (420)
T ss_pred             CCeEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhhc--CCCeEEEEeCCCCCCHH
Confidence            899999999999999999999999999999999999998876554  57788883223444444

>PRK05638 threonine synthase; Validated

Probab=99.47  E-value=4.9e-13  Score=123.68  Aligned_cols=51  Identities=25%  Similarity=0.300  Sum_probs=40.4

Q ss_pred             eEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEE
Q 043034           79 YCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVV  130 (197)
Q Consensus        79 eiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt  130 (197)
                      .++.|+|+++.++.+.|+ ++||++|||||++++++++++++.. .++++||+
T Consensus       298 ~~~~v~d~~i~~a~~~l~-~eGi~~epssaaa~Aa~~~~~~~g~i~~~~~Vv~  349 (442)
T PRK05638        298 TAVVVNEEEIMAGEKLLA-KEGIFAELSSAVVMPALLKLGEEGYIEKGDKVVL  349 (442)
T ss_pred             EEEEECHHHHHHHHHHHH-hcCceecchHHHHHHHHHHHHHcCCCCCCCeEEE
Confidence            466777777766665555 5899999999999999999998742 36788998

>TIGR02991 ectoine_eutB ectoine utilization protein EutB

Probab=99.47  E-value=2.8e-13  Score=120.41  Aligned_cols=51  Identities=16%  Similarity=-0.018  Sum_probs=43.6

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++|+|++++|++++|||+++++++++...+   ++++||+
T Consensus       249 vd~~v~V~d~e~~~a~~~l~~~~g~~ve~s~a~~~Aal~~~~~~---~~~~vvv  299 (317)
T TIGR02991       249 LDEIVLVSEAEIAAGIRHAYAEEREIVEGAGAVGIAALLAGKIK---NPGPCAV  299 (317)
T ss_pred             CCeEEEECHHHHHHHHHHHHHhCCcEEcchHHHHHHHHHcCccc---cCCcEEE
Confidence            99999999999999999999999999999999999888743222   3556777

Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.

>PRK08526 threonine dehydratase; Provisional

Probab=99.43  E-value=4e-13  Score=123.69  Aligned_cols=63  Identities=21%  Similarity=0.086  Sum_probs=51.3

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccc
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFS  140 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s  140 (197)
                      +|+++.|+|+|+.+++++|++++|+++|||++++++++++...+. .++++||++.-+|.-+++
T Consensus       248 vd~~v~V~d~ei~~A~~~l~~~~gi~ve~aga~~lAall~~~~~~-~~~~~Vv~ilsGGnid~~  310 (403)
T PRK08526        248 VDDFVQVDDEEIANAILFLLEKQKIVVEGAGAASVAALLHQKIDL-KKGKKIGVVLSGGNIDVQ  310 (403)
T ss_pred             CCEEEEECHHHHHHHHHHHHHhcCcEeeHHHHHHHHHHHhCcccc-ccCCeEEEEECCCCCCHH
Confidence            899999999999999999999999999999999999988644333 246777775334666666

>PRK06450 threonine synthase; Validated

Probab=99.41  E-value=1.9e-12  Score=116.60  Aligned_cols=39  Identities=41%  Similarity=0.466  Sum_probs=36.5

Q ss_pred             eeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHH
Q 043034           78 EYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKV  117 (197)
Q Consensus        78 Deiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlkl  117 (197)
                      ++++.|+|+|+++++++|++ +|+++|||||++++|++++
T Consensus       283 g~~v~V~d~ei~~a~~~La~-~Gi~vepssaaalAa~~~l  321 (338)
T PRK06450        283 GECIVVSDNEIVEAWKELAK-KGLLVEYSSATVYAAYKKY  321 (338)
T ss_pred             CcEEEECHHHHHHHHHHHHH-cCCEEChhHHHHHHHHHHC
Confidence            37999999999999999997 6999999999999999886

>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.39  E-value=2.3e-12  Score=110.57  Aligned_cols=54  Identities=41%  Similarity=0.431  Sum_probs=46.3

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC---CCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE---NDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~---~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++|+|++++|+++||++|++++++++++++..   +++++||+
T Consensus       246 ~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~~a~a~aa~~~~~~~~~~~~~~~~~vv~  302 (306)
T PF00291_consen  246 VGDVVGVSDEEALEAIRELAEREGILVEPSSAAALAAALKLAERGSLAPPAGKRVVV  302 (306)
T ss_dssp             TEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHTGCHTTTTSEEEE
T ss_pred             cccccccchHHHHHHHHHHHHHcCcEEcHHHHHHHHHHHHHHHhCCccccCCCeEEE
Confidence            4567899999999999999999999999999999999999987753   26788888

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....

>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family

Probab=99.39  E-value=1.3e-12  Score=114.55  Aligned_cols=54  Identities=17%  Similarity=0.186  Sum_probs=45.6

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeee-hhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGI-SSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~-SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      .|+.+.|+|+|+++++|+|++++||++|| |||++++++++++++.+.++++||+
T Consensus       241 ~~~~~~v~d~e~~~~~~~la~~~gi~vep~~sg~~~aa~~~~~~~~~~~~~~vv~  295 (311)
T TIGR01275       241 SGPGYGKPTSEVAEIVKKVASREGIILDPVYTGKAFYGLIDLIRKGELGEKGILF  295 (311)
T ss_pred             ccCcCCCCCHHHHHHHHHHHHHhCCccCcchHHHHHHHHHHHHHhCCCCCCCEEE
Confidence            34568899999999999999999999999 5999999999988664324567777

This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).

>TIGR03844 cysteate_syn cysteate synthase

Probab=99.38  E-value=2.7e-12  Score=118.20  Aligned_cols=54  Identities=20%  Similarity=0.198  Sum_probs=48.2

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt  130 (197)
                      .++++.|+|+|+.++++.|++++|++++||||+++||++++.++.. .++++||+
T Consensus       319 ~g~~v~Vsd~eI~~A~~~l~~~~gi~vEpa~A~alAal~k~~~~g~i~~~~~Vv~  373 (398)
T TIGR03844       319 GGQMYGVSNKEAVSAGKLFEESEGIDILPAAAVAVAALVKAVESGFIGPDDDILL  373 (398)
T ss_pred             CCEEEEECHHHHHHHHHHHHhhCCccccccHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence            5789999999999999999999999999999999999999887632 35778888

Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.

>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form

Probab=99.37  E-value=4.3e-12  Score=119.98  Aligned_cols=54  Identities=13%  Similarity=0.066  Sum_probs=49.3

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|+++.|+|+|+.++++.|++++|+++|||||++++|+++++++...++++||+
T Consensus       246 vd~vv~V~d~ei~~ai~~l~~~~gii~EpagA~~lAal~~~~~~~~~~~~~vv~  299 (499)
T TIGR01124       246 LDDIVTVDTDEVCAAIKDLFEDTRAVAEPAGALALAGLKKYVALHGIRGQTLVA  299 (499)
T ss_pred             CCEEEEECHHHHHHHHHHHHHhcCcEEechHHHHHHHHHHhhhhcCCCCCeEEE
Confidence            899999999999999999999999999999999999999988765335778888

Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.

>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional

Probab=99.36  E-value=2.1e-12  Score=115.18  Aligned_cols=54  Identities=15%  Similarity=0.188  Sum_probs=47.5

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeeh-hHHHHHHHHHHhcCCC-CCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGIS-SDAAAAASIKVAKIPE-NDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~S-SGAaLAAAlklA~~~~-~~g~~VVt  130 (197)
                      +|+.+.|+|+|+++++|+|++++||++||+ ||.+++++++++++.. +++.+||.
T Consensus       264 ~~~~~~vsd~e~~~a~~~la~~~gi~~ep~ysg~~~aa~~~~~~~g~~~~~~~vv~  319 (337)
T PRK12390        264 AGPEYGLPNEGTLEAIRLCARLEGMLTDPVYEGKSMHGMIDLVRKGEFPEGSKVLY  319 (337)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCCCCCCeEEE
Confidence            678899999999999999999999999996 9999999999998643 35667666

>PRK09224 threonine dehydratase; Reviewed

Probab=99.35  E-value=4.1e-12  Score=119.99  Aligned_cols=54  Identities=11%  Similarity=0.044  Sum_probs=49.2

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|+++.|+|+|+.+++++|++++|+++|||||++++|+++++++...++++||+
T Consensus       249 vd~~v~Vsd~ei~~a~~~l~~~~~~~~epagA~~lAal~~~~~~~~~~g~~vv~  302 (504)
T PRK09224        249 VDDVITVDTDEICAAIKDVFEDTRSIAEPAGALALAGLKKYVAQHGIEGETLVA  302 (504)
T ss_pred             CCeEEEECHHHHHHHHHHHHHhcCeEEcHHHHHHHHHHHHhhhhcCCCCCeEEE
Confidence            899999999999999999999999999999999999999988764335788888

>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional

Probab=99.35  E-value=2.6e-12  Score=114.47  Aligned_cols=51  Identities=18%  Similarity=0.137  Sum_probs=44.2

Q ss_pred             eeEEEcCcHHHHHHHHHHHHHhCCeeee-hhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           78 EYCFQVSSEEAIETAQQLAHKEGLLVGI-SSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        78 Deiv~VsDeEAi~aaR~LAr~EGI~VG~-SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      |++..++ +|+++++|+|+++|||++|| |||.+++++++++++.. .+++||+
T Consensus       258 ~~y~~~~-~e~~~~~~~la~~eGi~ldpvytgk~~~a~~~~~~~~~-~~~~iv~  309 (329)
T PRK14045        258 GEYGKIT-KEVAKLIRSVGTMEGLILDPVYTGKAFYGLMDLAKKGE-LGEKILF  309 (329)
T ss_pred             CCCCCCC-HHHHHHHHHHHHhhCCCCccchHHHHHHHHHHHHHcCC-CCCCEEE
Confidence            4455777 79999999999999999998 99999999999999863 3667877

>PRK12483 threonine dehydratase; Reviewed

Probab=99.35  E-value=7e-12  Score=119.41  Aligned_cols=64  Identities=14%  Similarity=0.075  Sum_probs=52.8

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccc
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFS  140 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s  140 (197)
                      +|+++.|+|+|+.+++++|++++|+++|||||++++|++++.++...++++||++..++.=+++
T Consensus       266 vd~vv~Vse~ei~~ai~~l~~~~~i~vEpagAaalAal~~~~~~~~~~g~~VV~IlsGgNid~~  329 (521)
T PRK12483        266 VDEVVTVSTDELCAAIKDIYDDTRSITEPAGALAVAGIKKYAEREGIEGQTLVAIDSGANVNFD  329 (521)
T ss_pred             CCEEEEECHHHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCHH
Confidence            8999999999999999999999999999999999999999876643357778874333443333

>PLN02550 threonine dehydratase

Probab=99.34  E-value=1e-11  Score=119.97  Aligned_cols=55  Identities=11%  Similarity=0.016  Sum_probs=48.7

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEe
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVS  131 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~  131 (197)
                      +|+++.|+|+|+.+++++|++++|++++||+|+++||++++.++...++++||++
T Consensus       338 vD~vV~Vsd~eI~~Ai~~l~e~~givvEpAGA~alAall~~~~~~~~~g~~Vv~v  392 (591)
T PLN02550        338 VDGVVLVSRDAICASIKDMFEEKRSILEPAGALALAGAEAYCKYYGLKDENVVAI  392 (591)
T ss_pred             CCEEEEECHHHHHHHHHHHHHHCCCEEeHHHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence            8999999999999999999999999999999999999999886533356777773

>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia

Probab=99.33  E-value=3.6e-12  Score=111.94  Aligned_cols=54  Identities=15%  Similarity=0.234  Sum_probs=47.7

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeee-hhHHHHHHHHHHhcCCC-CCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGI-SSDAAAAASIKVAKIPE-NDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~-SSGAaLAAAlklA~~~~-~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++|+|++++||++|| |||++++++++++++.. +++++||+
T Consensus       247 ~~~~~~v~d~e~~~a~~~la~~~Gi~~ep~ytg~~~aa~~~~~~~~~~~~~~~vv~  302 (307)
T cd06449         247 AAPEYGIPNDETIEAIKLCARLEGIITDPVYEGKSMQGMIDLVRNGEFKEGSKVLF  302 (307)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHhcCCCCCCCeEEE
Confidence            67789999999999999999999999999 79999999999998742 35677777

>PRK03910 D-cysteine desulfhydrase; Validated

Probab=99.16  E-value=9.2e-11  Score=104.37  Aligned_cols=54  Identities=20%  Similarity=0.268  Sum_probs=46.7

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeeh-hHHHHHHHHHHhcCCC-CCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGIS-SDAAAAASIKVAKIPE-NDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~S-SGAaLAAAlklA~~~~-~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++|+|++++||++||+ ||++++++++++++.. .++++||+
T Consensus       258 ~~~~~~v~d~e~~~~~~~l~~~~gi~~ep~ysg~~~aa~~~~~~~~~~~~~~~Vv~  313 (331)
T PRK03910        258 VGPGYGVPTDEMLEAVKLLARTEGILLDPVYTGKAMAGLIDLIRQGRFKKGGNVLF  313 (331)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHcCCCCCCCeEEE
Confidence            566799999999999999999999999996 9999999999887643 24677777

>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase

Probab=99.14  E-value=1.8e-10  Score=102.87  Aligned_cols=54  Identities=17%  Similarity=0.185  Sum_probs=46.6

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeeh-hHHHHHHHHHHhcCCC-CCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGIS-SDAAAAASIKVAKIPE-NDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~S-SGAaLAAAlklA~~~~-~~g~~VVt  130 (197)
                      +|+.+.|+|+|+++++++|++++|++++|+ ||.+++|+++++++.. +++++||+
T Consensus       263 ~~~~~~v~d~e~~~a~~~la~~eGi~~ep~ytg~~~aa~~~~~~~g~~~~~~~vv~  318 (337)
T TIGR01274       263 AYPEYGVPNEGTLEAIRLCAKMEGVLTDPVYEGKSMHGMIEMIRRGEFKEGSNVLY  318 (337)
T ss_pred             cCCCcCCCCHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHhcCCCCCCCEEEE
Confidence            456789999999999999999999999995 9999999999998753 35667666

This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.

>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase

Probab=99.12  E-value=2.7e-10  Score=104.94  Aligned_cols=38  Identities=11%  Similarity=0.058  Sum_probs=35.0

Q ss_pred             ceeEEEcCcHHHHHHHHHHHH----HhCCeeeehhHHHHHHH
Q 043034           77 HEYCFQVSSEEAIETAQQLAH----KEGLLVGISSDAAAAAS  114 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr----~EGI~VG~SSGAaLAAA  114 (197)
                      +|+++.|+|+|+++++|+|++    ++++++|||++++++++
T Consensus       310 ~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~epsga~~~Aal  351 (396)
T TIGR03528       310 ASQFISCPDWVAAKGMRILGNPLKGDPRVISGESGAVGTGLL  351 (396)
T ss_pred             CCeEEEECHHHHHHHHHHHhcccCCCCceeecCcHHHHHHHH
Confidence            799999999999999999998    67999999999999444

Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.

>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family

Probab=99.10  E-value=4e-10  Score=103.21  Aligned_cols=55  Identities=11%  Similarity=0.096  Sum_probs=43.6

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHh----CCeeeehhHHHHHHHHHHh---------cCCC-CCCceEEEe
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKE----GLLVGISSDAAAAASIKVA---------KIPE-NDRILIVVS  131 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~E----GI~VG~SSGAaLAAAlklA---------~~~~-~~g~~VVt~  131 (197)
                      .|+++.|+|+|+.+++++|++..    ++++|||++++++++...+         +++. .++++||+.
T Consensus       291 ~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~epaga~~la~l~~~~~~~~~~~~~~~~~~~~~~~vvvi  359 (376)
T TIGR01747       291 TSQFISAQDSVAAKGMRVLGAPYGGDPRIISGESGAVGLGLLAAVMYHPQYQSLMEKLQLDKDAVVLVI  359 (376)
T ss_pred             CCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeCchHHHHHHHHHHHhCchHHHHHHHcCCCCCCEEEEE
Confidence            89999999999999999999866    5999999999997776333         3322 346777773

This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).

>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]

Probab=98.95  E-value=5.6e-09  Score=97.42  Aligned_cols=63  Identities=25%  Similarity=0.231  Sum_probs=50.9

Q ss_pred             eeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE-eecccccccc
Q 043034           78 EYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV-SLISYKLYFS  140 (197)
Q Consensus        78 Deiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt-~~~~~d~~~s  140 (197)
                      .....|||+|++++.+.|+++||++++|+|++++++++|+.++...++.++|+ +|+.+=|+-+
T Consensus       314 g~~~~vsdeEi~~a~~~l~~~eG~~~eP~sA~ava~l~k~~~~~i~~~~~vV~v~Tg~~~K~~~  377 (411)
T COG0498         314 GLAVAVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKLREKIIDPDETVVLVLTGHGLKFPD  377 (411)
T ss_pred             CceEEeCHHHHHHHHHHHHHhCCcccCccHHHHHHHHHHHHHhhcCCCCeEEEEecCCcccChh
Confidence            44899999999999999999999999999999999999999862234445554 4666666665

>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]

Probab=98.94  E-value=4.3e-09  Score=96.41  Aligned_cols=70  Identities=24%  Similarity=0.217  Sum_probs=60.3

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccceecccc
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSL  146 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s~~~~~~  146 (197)
                      =-+++.|+|+||+++.+.|.|.|||+.-.-|.-+++-|.|+++++..+...||.+|||||||..++++-|
T Consensus       321 Ra~y~~itD~EAl~af~~L~r~EGIIPALESsHAlA~a~kla~~~~~~~~ivvnlSGRGDKDv~tv~~~l  390 (396)
T COG0133         321 RAEYVSITDEEALEAFQLLSRLEGIIPALESSHALAYALKLAPKLPKDEIIVVNLSGRGDKDVFTVAKLL  390 (396)
T ss_pred             ceeEEecChHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHhchhcCCCcEEEEEccCCCcccHHHHHHHh
Confidence            4467899999999999999999999999999999999999998875333456667999999998777654

>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]

Probab=98.79  E-value=3e-08  Score=90.97  Aligned_cols=53  Identities=17%  Similarity=0.133  Sum_probs=47.9

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|+++.|+|+|+.++++.|++++++.++||++++++|+++...+. .++++|++
T Consensus       256 vd~~v~V~e~ei~~am~~l~~~~~iI~EpaGAlalAal~~~~~~~-~~g~~v~~  308 (347)
T COG1171         256 VDDIVLVDEDEICAAMRDLFERTKIIAEPAGALALAALLAGKIEP-LQGKTVVV  308 (347)
T ss_pred             CCcEEEECHHHHHHHHHHHHhcCCeeccccHHHHHHHHHhhhhhh-cCCCeEEE
Confidence            999999999999999999999999999999999999999988774 35775555

>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]

Probab=98.71  E-value=1.2e-07  Score=88.74  Aligned_cols=53  Identities=21%  Similarity=0.146  Sum_probs=47.9

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|+++.|+|+|+.+++.+|..+|..+|+|++|++++|.+.. +....++++||.
T Consensus       295 ~d~vvvV~~~ei~aaI~~l~edek~vvEpAgaaaLaai~~~-~~~~lk~~~vv~  347 (457)
T KOG1250|consen  295 VDRVVVVEDDEIAAAILRLFEDEKMVVEPAGAAALAAIYSG-KLNHLKGKKVVS  347 (457)
T ss_pred             CceEEEeccHHHHHHHHHHHHhhhheeccchHHHHHHHHhc-cccccCCceEEe
Confidence            99999999999999999999999999999999999999988 433357888777

>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]

Probab=98.44  E-value=1.7e-06  Score=80.58  Aligned_cols=67  Identities=18%  Similarity=0.209  Sum_probs=59.1

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEe-ecccccccceecc
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVS-LISYKLYFSFCIN  144 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~-~~~~d~~~s~~~~  144 (197)
                      --+.+.|+|+|+++..++|+|.|||.-.+-+.-++++..++++++. ++++||.- +||||+|.-.+..
T Consensus       389 rae~isitd~eclegfk~~srlEGIIPAlEssHAva~~~~lck~l~-~~k~ivi~~sGrGdkDvqS~~k  456 (477)
T KOG1395|consen  389 RAEFISITDAECLEGFKQLSRLEGIIPALESSHAVAGEAELCKTLP-EDKVIVINISGRGDKDVQSVAK  456 (477)
T ss_pred             ceeEEecChHHHHHHHHHHHHhcccccCCchhhHHHHHHHhccccC-CCcEEEEEecCCCCchHHHHHH
Confidence            6789999999999999999999999999999999999999999885 67776665 9999999874443

>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]

Probab=98.07  E-value=2.4e-05  Score=70.19  Aligned_cols=52  Identities=15%  Similarity=0.068  Sum_probs=46.1

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|++++|+|+|..++++.++.+..+.++|+++..+||++-...+.  ..|+|.+
T Consensus       253 vddi~Tv~e~Ei~~~lk~~~ermK~~vEPTa~lgfAavl~~k~~~--~~K~igI  304 (323)
T KOG1251|consen  253 VDDILTVSEDEIKEALKLIWERMKVVVEPTAALGFAAVLSHKFAL--NIKRIGI  304 (323)
T ss_pred             hhhheeecHHHHHHHHHHHHHHHheeeccchhHHHHHHHhhhHHh--ccCceEE
Confidence            999999999999999999999999999999999999998766554  2566666

>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]

Probab=97.07  E-value=0.0047  Score=57.64  Aligned_cols=54  Identities=24%  Similarity=0.167  Sum_probs=47.0

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +-+.+..+++|+|++++.+++.|||.-.|-|+.++.+|+..|.+....+...|+
T Consensus       354 iv~a~ay~Q~Evfeaa~lFa~~EGiVPAPEsaHAi~~aid~A~~a~~~geekvI  407 (432)
T COG1350         354 IVEARAYDQEEVFEAAVLFARTEGIVPAPESAHAIKAAIDEALKAREEGEEKVI  407 (432)
T ss_pred             cccceecChHHHHHHHHHHHHhcCCccCCcchhhHHHHHHHHHhccccCceeEE
Confidence            778889999999999999999999999999999999999999876544544444

>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis

Probab=96.81  E-value=0.0031  Score=59.90  Aligned_cols=66  Identities=23%  Similarity=0.233  Sum_probs=51.7

Q ss_pred             eEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccceecccc
Q 043034           79 YCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSL  146 (197)
Q Consensus        79 eiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s~~~~~~  146 (197)
                      ..+.|+|+|+.++++++++++|+++.|.|+++++++.++.++.  ....|+..|+.+=|+-..+...+
T Consensus       361 ~a~~vsD~ei~~~i~~~~~~~G~~vdPhtAva~aa~~~~~~~~--~~~~V~l~Ta~p~Kf~~~v~~a~  426 (460)
T cd01560         361 SSGSVSDEETLETIREVYEETGYLIDPHTAVGVRAAERVRKSP--GTPGVVLSTAHPAKFPEAVKEAL  426 (460)
T ss_pred             eEEEECHHHHHHHHHHHHHhcCEEECchHHHHHHHHHHHHhcc--CCCEEEEecCCcccCHHHHHHhh
Confidence            4589999999999999999999999999999999998877651  23445555777777666444443

The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.

>PRK09225 threonine synthase; Validated

Probab=96.72  E-value=0.0038  Score=59.32  Aligned_cols=64  Identities=17%  Similarity=0.110  Sum_probs=49.2

Q ss_pred             eEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccceeccc
Q 043034           79 YCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINS  145 (197)
Q Consensus        79 eiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s~~~~~  145 (197)
                      ..+.|+|+|+.++++++++++|+++.|+|+++++++.++.+.   ....|+..|+.+=|+-..+...
T Consensus       358 ~a~~vsD~ei~~ai~~~~~~~G~~~dPhtAva~aa~~~~~~~---~~~~V~l~Ta~p~Kf~~~v~~a  421 (462)
T PRK09225        358 SAGSVSDEETLATIREVYEEYGYLIDPHTAVAYKAAREYLDP---GEPGVVLSTAHPAKFPEVVEEA  421 (462)
T ss_pred             eEEEECHHHHHHHHHHHHHhCCEEECchHHHHHHHHHHhhCC---CCCEEEEecCCccCCHHHHHHh
Confidence            568999999999999999999999999999999999887321   2344555466666665544433

>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]

Probab=96.60  E-value=0.0015  Score=60.56  Aligned_cols=42  Identities=21%  Similarity=0.236  Sum_probs=38.0

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHh
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVA  118 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA  118 (197)
                      .|.+++|+|+..+...++|++.||+.++||+=|.+++-.++.
T Consensus       357 L~G~~TvdD~~ly~lL~~L~~~e~~rlEPSalAgm~Gp~~~~  398 (443)
T COG3048         357 LDGYYTVDDQTLYDLLGWLAQEEGIRLEPSALAGMAGPQRVC  398 (443)
T ss_pred             hCCcEEechHHHHHHHHHHHHhcCcccCchhhhcccCcceee
Confidence            899999999999999999999999999999988887665554

>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis

Probab=90.98  E-value=0.32  Score=46.34  Aligned_cols=31  Identities=13%  Similarity=0.088  Sum_probs=26.9

Q ss_pred             CCEEEEeeCCChHHHH-HHHHHhhhHHhhcCCcEEEE
Q 043034           14 GKSILIEITSSNTGIG-LAFISAVRIAAVRGYKSYHC   49 (197)
Q Consensus        14 G~t~Iie~tsgntgi~-lA~iaa~~~~~~~Gyk~~~~   49 (197)
                      +..+|+.+||||||.+ +|..++     ..|.+++++
T Consensus       131 ~~~~Il~ATSGdTG~Aa~aaf~~-----~~gi~v~Vl  162 (460)
T cd01560         131 ERITILVATSGDTGSAAIEGFRG-----KPNVDVVVL  162 (460)
T ss_pred             CCeEEEEcCCCcHHHHHHHHHhC-----cCCCEEEEE
Confidence            3334999999999999 689999     999999987

The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.

>PRK09225 threonine synthase; Validated

Probab=89.54  E-value=0.45  Score=45.48  Aligned_cols=28  Identities=14%  Similarity=0.120  Sum_probs=25.4

Q ss_pred             EEEeeCCChHHHHH-HHHHhhhHHhhcCCcEEEE
Q 043034           17 ILIEITSSNTGIGL-AFISAVRIAAVRGYKSYHC   49 (197)
Q Consensus        17 ~Iie~tsgntgi~l-A~iaa~~~~~~~Gyk~~~~   49 (197)
                      +|+.+||||||.+. |..++     ..|.+++++
T Consensus       133 ~Il~ATSGdtG~Aa~aaf~~-----~~gi~~~V~  161 (462)
T PRK09225        133 TILGATSGDTGSAAAEAFRG-----KPNVRVVIL  161 (462)
T ss_pred             EEEEcCCCcHHHHHHHHHhC-----cCCCEEEEE
Confidence            49999999999998 78888     999999987

>PF03192 DUF257: Pyrococcus protein of unknown function, DUF257; InterPro: IPR005489 This family of proteins is of unknown function

Probab=89.14  E-value=0.45  Score=40.97  Aligned_cols=40  Identities=28%  Similarity=0.462  Sum_probs=29.0

Q ss_pred             CCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034            9 GLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC   49 (197)
Q Consensus         9 G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~   49 (197)
                      +.++||.+++||.+| ....-|.+...++-+..+|+++++.
T Consensus         6 ~~~k~GE~VLVEy~S-~~~~el~~~~li~~~~~~~~~vlI~   45 (210)
T PF03192_consen    6 DSIKPGETVLVEYSS-SSPPELLFYELIKWAREKGYPVLID   45 (210)
T ss_dssp             TTS-TT-EEEEEE-T-TS-THHHHHHHHH---T-SS-BEEE
T ss_pred             ccCCCCCEEEEEeCC-CCcHHHHHHHHHHHhhhcCCCEEEE
Confidence            579999999999999 9999999999999999999999998

; PDB: 2EKD_C.

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=84.85  E-value=8  Score=34.41  Aligned_cols=38  Identities=13%  Similarity=0.193  Sum_probs=29.0

Q ss_pred             HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCc-EEEE
Q 043034            6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK-SYHC   49 (197)
Q Consensus         6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk-~~~~   49 (197)
                      .++..++||++++|.+ +|..|...+.+++     .+|.+ ++.+
T Consensus       184 ~~~~~i~~g~~VlV~G-~G~vG~~a~~lak-----~~G~~~Vi~~  222 (371)
T cd08281         184 VNTAGVRPGQSVAVVG-LGGVGLSALLGAV-----AAGASQVVAV  222 (371)
T ss_pred             HhccCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCCcEEEE
Confidence            4567899999988866 5777777777777     99995 6554

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	197
4aec_A	430	Crystal Structure Of The Arabidopsis Thaliana O-Ace		5e-10
4aec_A	430	Crystal Structure Of The Arabidopsis Thaliana O-Ace		3e-08
1z7w_A	322	Crystal Structure Of O-Acetylserine Sulfhydrylase F		3e-09
1z7w_A	322	Crystal Structure Of O-Acetylserine Sulfhydrylase F		6e-07
1z7y_A	322	Crystal Structure Of The Arabidopsis Thaliana O-Ace		3e-09
1z7y_A	322	Crystal Structure Of The Arabidopsis Thaliana O-Ace		6e-07
2isq_A	320	Crystal Structure Of O-Acetylserine Sulfhydrylase F		3e-09
2isq_A	320	Crystal Structure Of O-Acetylserine Sulfhydrylase F		6e-07
3vc3_A	344	Crystal Structure Of Beta-Cyanoalanine Synthase K95		3e-08
3vc3_A	344	Crystal Structure Of Beta-Cyanoalanine Synthase K95		2e-05
3vbe_A	344	Crystal Structure Of Beta-Cyanoalanine Synthase In		4e-08
3vbe_A	344	Crystal Structure Of Beta-Cyanoalanine Synthase In		2e-05
1ve1_A	304	Crystal Structure Of T.Th. Hb8 O-Acetylserine Sulfh		4e-07
1jbq_A	435	Structure Of Human Cystathionine Beta-Synthase: A U		9e-06
1m54_A	363	Cystathionine-Beta Synthase: Reduced Vicinal Thiols		1e-05
3pc2_A	527	Full Length Structure Of Cystathionine Beta-Synthas		1e-05
2bht_A	303	Crystal Structure Of O-Acetylserine Sulfhydrylase B		7e-05
1d6s_A	322	Crystal Structure Of The K41a Mutant Of O-Acetylser		7e-05
1oas_A	322	O-Acetylserine Sulfhydrylase From Salmonella Typhim		7e-05
2jc3_A	303	Structure Of O-acetylserine Sulfhydrylase B From Sa		1e-04
2bhs_A	303	Crystal Structure Of Cysteine Synthase B Length = 3		1e-04
2v03_A	303	High Resolution Structure And Catalysis Of An O- Ac		1e-04
4i1y_A	314	The Structure Of Cysteine Synthase From Mycobacteri		3e-04
3rr2_A	314	Structure Of A Cysteine Synthase (O-Acetylserine Su		3e-04
2egu_A	308	Crystal Structure Of O-Acetylserine Sulfhydrase Fro		3e-04
3t4p_A	334	Crystal Structure Of O-Acetyl Serine Sulfhydrylase		5e-04
4air_A	354	Leishmania Major Cysteine Synthase Length = 354		7e-04
2q3b_A	313	1.8 A Resolution Crystal Structure Of O-Acetylserin		7e-04
2q3d_A	313	2.2 A Resolution Crystal Structure Of O-acetylserin		7e-04

>pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl- Serine-(Thiol)-Lyase C Length = 430

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 34/45 (75%), Gaps = 5/45 (11%)
Query: 1   MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
           M+ DAE KG I+PGKS+L+E TS NTGIGLAF     IAA RGY+
Sbjct: 161 MVTDAEQKGFISPGKSVLVEPTSGNTGIGLAF-----IAASRGYR 200

>pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl- Serine-(Thiol)-Lyase C Length = 430

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 54/146 (36%), Gaps = 46/146 (31%)
Query: 54  LHHSEYVVLSHVVMGKHLIQA------------SCHEYCFQVSSEEAIETAQQLAHKEGL 101
           +  +E  +LS    G H IQ                +    +SSEEAIETA+QLA KEGL
Sbjct: 313 VEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGL 372
Query: 102 LVGXXXXXXXXXXXXXXXXPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEAC 161
           +VG                PEN   LI V                               
Sbjct: 373 MVGISSGAAAAAAIKVAKRPENAGKLIAV------------------------------- 401
Query: 162 HQFLLPSGGERYLSTELFDSITHEAE 187
              + PS GERYLST LF SI  E E
Sbjct: 402 ---VFPSFGERYLSTPLFQSIREEVE 424

>pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From Arabidopsis Thaliana Length = 322

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 33/45 (73%), Gaps = 5/45 (11%)
Query: 1  MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          MI DAE KGLI PG+S+LIE TS NTG+GLAF      AA +GYK
Sbjct: 53 MISDAEKKGLIKPGESVLIEPTSGNTGVGLAF-----TAAAKGYK 92

>pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From Arabidopsis Thaliana Length = 322

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 55/142 (38%), Gaps = 46/142 (32%)
Query: 58  EYVVLSHVVMGKHLIQASCHEY------------CFQVSSEEAIETAQQLAHKEGLLVGX 105
           E  +LS    G H IQ     +              QVSS+E+I+ A+QLA KEGLLVG 
Sbjct: 209 ESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGI 268
Query: 106 XXXXXXXXXXXXXXXPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFL 165
                          PEN          + KL+ +                        +
Sbjct: 269 SSGAAAAAAIKLAQRPEN----------AGKLFVA------------------------I 294
Query: 166 LPSGGERYLSTELFDSITHEAE 187
            PS GERYLST LFD+   EAE
Sbjct: 295 FPSFGERYLSTVLFDATRKEAE 316

>pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetylserine Sulfhydrylase K46a Mutant Length = 322

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 33/45 (73%), Gaps = 5/45 (11%)
Query: 1  MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          MI DAE KGLI PG+S+LIE TS NTG+GLAF      AA +GYK
Sbjct: 53 MISDAEKKGLIKPGESVLIEPTSGNTGVGLAF-----TAAAKGYK 92

>pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetylserine Sulfhydrylase K46a Mutant Length = 322

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 55/142 (38%), Gaps = 46/142 (32%)
Query: 58  EYVVLSHVVMGKHLIQA------------SCHEYCFQVSSEEAIETAQQLAHKEGLLVGX 105
           E  +LS    G H IQ                +   QVSS+E+I+ A+QLA KEGLLVG 
Sbjct: 209 ESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGI 268
Query: 106 XXXXXXXXXXXXXXXPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFL 165
                          PEN          + KL+ +                        +
Sbjct: 269 SSGAAAAAAIKLAQRPEN----------AGKLFVA------------------------I 294
Query: 166 LPSGGERYLSTELFDSITHEAE 187
            PS GERYLST LFD+   EAE
Sbjct: 295 FPSFGERYLSTVLFDATRKEAE 316

>pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From Arabidopsis Thaliana In Complex With C-Terminal Peptide From Arabidopsis Serine Acetyltransferase Length = 320

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 33/45 (73%), Gaps = 5/45 (11%)
Query: 1  MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          MI DAE KGLI PG+S+LIE TS NTG+GLAF      AA +GYK
Sbjct: 51 MISDAEKKGLIKPGESVLIEPTSGNTGVGLAF-----TAAAKGYK 90

>pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From Arabidopsis Thaliana In Complex With C-Terminal Peptide From Arabidopsis Serine Acetyltransferase Length = 320

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 55/142 (38%), Gaps = 46/142 (32%)
Query: 58  EYVVLSHVVMGKHLIQASCHEY------------CFQVSSEEAIETAQQLAHKEGLLVGX 105
           E  +LS    G H IQ     +              QVSS+E+I+ A+QLA KEGLLVG 
Sbjct: 207 ESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGI 266
Query: 106 XXXXXXXXXXXXXXXPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFL 165
                          PEN          + KL+ +                        +
Sbjct: 267 SSGAAAAAAIKLAQRPEN----------AGKLFVA------------------------I 292
Query: 166 LPSGGERYLSTELFDSITHEAE 187
            PS GERYLST LFD+   EAE
Sbjct: 293 FPSFGERYLSTVLFDATRKEAE 314

>pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a Mutant In Soybean Length = 344

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 33/45 (73%), Gaps = 5/45 (11%)
Query: 1   MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
           MI DAE+K LITPGK+ LIE TS N GI +AF     +AA++GYK
Sbjct: 73  MITDAEEKNLITPGKTTLIEPTSGNMGISMAF-----MAAMKGYK 112

>pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a Mutant In Soybean Length = 344

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 48/125 (38%), Gaps = 34/125 (27%)
Query: 71  LIQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGXXXXXXXXXXXXXXXXPENDRILIVV 130
           ++     E   +VSSE+A+  A+ LA KEGL+VG                PEN   LIV 
Sbjct: 254 ILDLDVMEKVLEVSSEDAVNMARVLALKEGLMVGISSGANTVAALRLAQLPENKGKLIV- 312
Query: 131 SLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETCL 190
                                    ++H        PS GERYLS+ LF  +  EAE   
Sbjct: 313 -------------------------TVH--------PSFGERYLSSVLFQELRQEAENMQ 339
Query: 191 LIQVS 195
            + V 
Sbjct: 340 PVAVD 344

>pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean Length = 344

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 33/45 (73%), Gaps = 5/45 (11%)
Query: 1   MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
           MI DAE+K LITPGK+ LIE TS N GI +AF     +AA++GYK
Sbjct: 73  MITDAEEKNLITPGKTTLIEPTSGNMGISMAF-----MAAMKGYK 112

>pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean Length = 344

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 48/125 (38%), Gaps = 34/125 (27%)
Query: 71  LIQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGXXXXXXXXXXXXXXXXPENDRILIVV 130
           ++     E   +VSSE+A+  A+ LA KEGL+VG                PEN   LIV 
Sbjct: 254 ILDLDVMEKVLEVSSEDAVNMARVLALKEGLMVGISSGANTVAALRLAQLPENKGKLIV- 312
Query: 131 SLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETCL 190
                                    ++H        PS GERYLS+ LF  +  EAE   
Sbjct: 313 -------------------------TVH--------PSFGERYLSSVLFQELRQEAENMQ 339
Query: 191 LIQVS 195
            + V 
Sbjct: 340 PVAVD 344

>pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine Sulfhydrylase Length = 304

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 1   MIKDAEDKGLITPGKS-ILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEY 59
           MIKDAE++G++ PG   +++E TS NTGIGLA      IAA RGY+        +     
Sbjct: 47  MIKDAEERGILRPGSGQVIVEPTSGNTGIGLAM-----IAASRGYRLILTMPAQMSEERK 101
Query: 60  VVLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLA 96
            VL     G  L+  +  E     + EEA+   ++L 
Sbjct: 102 RVLK--AFGAELV-LTDPERRMLAAREEALRLKEELG 135

>pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique Pyridoxal 5'- Phosphate Dependent Hemeprotein Length = 435

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 30/45 (66%), Gaps = 6/45 (13%)
Query: 1   MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
           MI+DAE  G + PG +I IE TS NTGIGLA       AAVRGY+
Sbjct: 148 MIEDAERDGTLKPGDTI-IEPTSGNTGIGLAL-----AAAVRGYR 186

>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols Length = 363

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 30/45 (66%), Gaps = 6/45 (13%)
Query: 1   MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
           MI+DAE  G + PG +I IE TS NTGIGLA       AAVRGY+
Sbjct: 83  MIEDAERDGTLKPGDTI-IEPTSGNTGIGLAL-----AAAVRGYR 121

>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From Drosophila Length = 527

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 1   MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYV 60
           M++DAE++GL+ PG +I IE TS NTGIGLA        AV+GYK        + + +  
Sbjct: 100 MVQDAEEQGLLKPGYTI-IEPTSGNTGIGLAM-----ACAVKGYKCIIVMPEKMSNEKVS 153
Query: 61  VLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQL 95
            L    +G  +I+    E  +  S E  I  AQQL
Sbjct: 154 ALR--TLGAKIIRTPT-EAAYD-SPEGLIYVAQQL 184

>pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B Length = 303

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 17/96 (17%)
Query: 1   MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYV 60
           MI +AE +G I PG  +LIE TS NTGI LA      IAA++GY+       ++      
Sbjct: 48  MIVEAEKRGRIKPG-DVLIEATSGNTGIALAM-----IAALKGYRMKLLMPDNMSQERRA 101
Query: 61  VLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLA 96
            +     G  LI          V+ E+ +E A+ LA
Sbjct: 102 AMR--AYGAELI---------LVTKEQGMEGARDLA 126

>pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine Sulfhydrylase Complexed In External Aldimine Linkage With Methionine Length = 322

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 6/45 (13%)
Query: 1  MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          MI DAE +G++ PG   L+E T+ NTGI LA+     +AA RGYK
Sbjct: 48 MIWDAEKRGVLKPGVE-LVEPTNGNTGIALAY-----VAAARGYK 86

>pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium Length = 322

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 6/45 (13%)
Query: 1  MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          MI DAE +G++ PG   L+E T+ NTGI LA+     +AA RGYK
Sbjct: 48 MIWDAEKRGVLKPGVE-LVEPTNGNTGIALAY-----VAAARGYK 86

>pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From Salmonella Typhimurium Length = 303

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 17/96 (17%)
Query: 1   MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYV 60
           MI +AE +G I PG  +LIE TS NTGI LA      IAA++GY+       ++      
Sbjct: 48  MIVEAEKRGEIKPG-DVLIEATSGNTGIALAM-----IAALKGYRMKLLMPDNMSQERRA 101
Query: 61  VLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLA 96
            +     G  LI          V+ E+ +E A+ LA
Sbjct: 102 AMR--AYGAELI---------LVTKEQGMEGARDLA 126

>pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B Length = 303

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 17/96 (17%)
Query: 1   MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYV 60
           MI +AE +G I PG  +LIE TS NTGI LA      IAA++GY+       ++      
Sbjct: 48  MIVEAEKRGEIKPG-DVLIEATSGNTGIALAM-----IAALKGYRMKLLMPDNMSQERRA 101
Query: 61  VLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLA 96
            +     G  LI          V+ E+ +E A+ LA
Sbjct: 102 AMR--AYGAELI---------LVTKEQGMEGARDLA 126

>pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O- Acetylserine Sulfhydrylase Length = 303

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 17/96 (17%)
Query: 1   MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYV 60
           MI +AE +G I PG  +LIE TS NTGI LA      IAA++GY+       ++      
Sbjct: 48  MIVEAEKRGEIKPG-DVLIEATSGNTGIALAM-----IAALKGYRMKLLMPDNMSQERRA 101
Query: 61  VLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLA 96
            +     G  LI          V+ E+ +E A+ LA
Sbjct: 102 AMR--AYGAELI---------LVTKEQGMEGARDLA 126

>pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium Ulcerans Agy99 Length = 314

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 6/45 (13%)
Query: 1  MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          MI  AE  GLI P  +I++E TS NTGI LA +S     A RGYK
Sbjct: 55 MIDAAEKAGLIKP-DTIILEPTSGNTGIALAMVS-----AARGYK 93

>pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc Baa-535 M Length = 314

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 6/45 (13%)
Query: 1  MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          MI  AE  GLI P  +I++E TS NTGI LA +S     A RGYK
Sbjct: 55 MIDAAEKAGLIKP-DTIILEPTSGNTGIALAMVS-----AARGYK 93

>pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From Geobacillus Kaustophilus Hta426 Length = 308

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 6/46 (13%)
Query: 1  MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKS 46
          MI+ AE  G + PG +I +E TS NTGIGLA      +AA +GYK+
Sbjct: 52 MIEAAEKAGKLKPGDTI-VEPTSGNTGIGLAM-----VAAAKGYKA 91

>pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From Leishmania Donovani In Complex With Designed Tetrapeptide Length = 334

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 5/41 (12%)
Query: 5  AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          AE +G + PGKSI++E +S NTG+ LA      + A+RGYK
Sbjct: 62 AEKEGKLIPGKSIVVESSSGNTGVSLA-----HLGAIRGYK 97

>pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase Length = 354

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 5/41 (12%)
Query: 5   AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
           AE +G + PGKS+++E +S NTG+ LA      + A+RGYK
Sbjct: 83  AEKEGKLIPGKSVVVESSSGNTGVSLA-----HLGAIRGYK 118

>pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine Sulfhydrylase (Oass) Holoenzyme From Mycobacterium Tuberculosis Length = 313

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 38/102 (37%), Gaps = 34/102 (33%)
Query: 83  VSSEEAIETAQQLAHKEGLLVGXXXXXXXXXXXXXXXXPENDRILIVVSLISYKLYFSFC 142
           V +E+A+  A++LA +EGLLVG                PEN   LIVV            
Sbjct: 246 VGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVV------------ 293
Query: 143 INSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITH 184
                                 +LP  GERYLST LF  +  
Sbjct: 294 ----------------------VLPDFGERYLSTPLFADVAD 313

>pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine Sulfhydrylase (oass) From Mycobacterium Tuberculosis In Complex With The Reaction Intermediate Alpha-aminoacrylate Length = 313

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 38/102 (37%), Gaps = 34/102 (33%)
Query: 83  VSSEEAIETAQQLAHKEGLLVGXXXXXXXXXXXXXXXXPENDRILIVVSLISYKLYFSFC 142
           V +E+A+  A++LA +EGLLVG                PEN   LIVV            
Sbjct: 246 VGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVV------------ 293
Query: 143 INSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITH 184
                                 +LP  GERYLST LF  +  
Sbjct: 294 ----------------------VLPDFGERYLSTPLFADVAD 313

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	197
1z7w_A	322	Cysteine synthase; transferase; HET: PLP; 2.20A {A	2e-28
1z7w_A	322	Cysteine synthase; transferase; HET: PLP; 2.20A {A	1e-18
3tbh_A	334	O-acetyl serine sulfhydrylase; cysteine synthase,	4e-28
3tbh_A	334	O-acetyl serine sulfhydrylase; cysteine synthase,	4e-18
4aec_A	430	Cysteine synthase, mitochondrial; lyase, cysteine	2e-27
4aec_A	430	Cysteine synthase, mitochondrial; lyase, cysteine	4e-18
2q3b_A	313	Cysteine synthase A; pyridoxal-5'-phosphate, sulph	2e-26
2q3b_A	313	Cysteine synthase A; pyridoxal-5'-phosphate, sulph	4e-16
1y7l_A	316	O-acetylserine sulfhydrylase, O-acetylserine (thio	2e-26
1y7l_A	316	O-acetylserine sulfhydrylase, O-acetylserine (thio	6e-16
2pqm_A	343	Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8	3e-25
2pqm_A	343	Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8	2e-15
3dwg_A	325	Cysteine synthase B; sulfur carrier protein comple	2e-24
3dwg_A	325	Cysteine synthase B; sulfur carrier protein comple	1e-14
1ve1_A	304	O-acetylserine sulfhydrylase; PLP, transferase, ri	2e-24
1ve1_A	304	O-acetylserine sulfhydrylase; PLP, transferase, ri	3e-16
2egu_A	308	Cysteine synthase; O-acetylserine sulfhydrase, str	9e-23
2egu_A	308	Cysteine synthase; O-acetylserine sulfhydrase, str	5e-15
1o58_A	303	O-acetylserine sulfhydrylase; TM0665, structural g	2e-21
1o58_A	303	O-acetylserine sulfhydrylase; TM0665, structural g	2e-14
1wkv_A	389	Cysteine synthase; homodimer, open alpha/beta fold	2e-21
1wkv_A	389	Cysteine synthase; homodimer, open alpha/beta fold	4e-12
2v03_A	303	Cysteine synthase B; pyridoxal phosphate, cysteine	1e-20
2v03_A	303	Cysteine synthase B; pyridoxal phosphate, cysteine	3e-15
1jbq_A	435	B, cystathionine beta-synthase, serine sulfhydrase	3e-16
1jbq_A	435	B, cystathionine beta-synthase, serine sulfhydrase	2e-13
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	1e-15
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	1e-13
1e5x_A	486	Threonine synthase; threonine biosynthesis, PLP en	7e-05
2zsj_A	352	Threonine synthase; PLP dependent enzyme, lyase; H	4e-04
3aey_A	351	Threonine synthase; PLP, pyridoxal phosphate, lyas	6e-04
2d1f_A	360	Threonine synthase; amino acid synthesis, pyridoxa	9e-04

>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* Length = 322

 Score =  107 bits (269), Expect = 2e-28
 Identities = 54/140 (38%), Positives = 65/140 (46%), Gaps = 46/140 (32%)

Query: 61  VLSHVVMGKHLIQ------------ASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSD 108
           +LS    G H IQ                +   QVSS+E+I+ A+QLA KEGLLVGISS 
Sbjct: 212 ILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSG 271

Query: 109 AAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPS 168
           AAAAA+IK+A+ PEN   L V                                   + PS
Sbjct: 272 AAAAAAIKLAQRPENAGKLFVA----------------------------------IFPS 297

Query: 169 GGERYLSTELFDSITHEAET 188
            GERYLST LFD+   EAE 
Sbjct: 298 FGERYLSTVLFDATRKEAEA 317

>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* Length = 322

 Score = 80.6 bits (200), Expect = 1e-18
 Identities = 29/45 (64%), Positives = 33/45 (73%), Gaps = 5/45 (11%)

Query: 1  MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          MI DAE KGLI PG+S+LIE TS NTG+GLAF      AA +GYK
Sbjct: 53 MISDAEKKGLIKPGESVLIEPTSGNTGVGLAF-----TAAAKGYK 92

>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A* Length = 334

 Score =  106 bits (267), Expect = 4e-28
 Identities = 38/140 (27%), Positives = 55/140 (39%), Gaps = 46/140 (32%)

Query: 61  VLSHVVMGKHLIQ------------ASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSD 108
           VLS    G H IQ             S  +    V+ ++AIETA +L   +G+  G S  
Sbjct: 217 VLSGGKPGPHKIQGIGPGFVPDVLDRSLIDEVLCVAGDDAIETALKLTRSDGVFCGFSGG 276

Query: 109 AAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPS 168
           A   A++K+A+ PE +   IV                                   ++PS
Sbjct: 277 ANVYAALKIAERPEMEGKTIVT----------------------------------VIPS 302

Query: 169 GGERYLSTELFDSITHEAET 188
            GERYLST L+ S+  E  +
Sbjct: 303 FGERYLSTTLYRSVRDEVSS 322

>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A* Length = 334

 Score = 79.5 bits (197), Expect = 4e-18
 Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 5/45 (11%)

Query: 1  MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          +   AE +G + PGKSI++E +S NTG+ LA      + A+RGYK
Sbjct: 58 IYDKAEKEGKLIPGKSIVVESSSGNTGVSLAH-----LGAIRGYK 97

>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} Length = 430

 Score =  106 bits (266), Expect = 2e-27
 Identities = 58/140 (41%), Positives = 65/140 (46%), Gaps = 46/140 (32%)

Query: 61  VLSHVVMGKHLIQ------------ASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSD 108
           +LS    G H IQ                +    +SSEEAIETA+QLA KEGL+VGISS 
Sbjct: 320 ILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSG 379

Query: 109 AAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPS 168
           AAAAA+IKVAK PEN   LI V                                  + PS
Sbjct: 380 AAAAAAIKVAKRPENAGKLIAV----------------------------------VFPS 405

Query: 169 GGERYLSTELFDSITHEAET 188
            GERYLST LF SI  E E 
Sbjct: 406 FGERYLSTPLFQSIREEVEK 425

>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} Length = 430

 Score = 80.5 bits (199), Expect = 4e-18
 Identities = 29/45 (64%), Positives = 34/45 (75%), Gaps = 5/45 (11%)

Query: 1   MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
           M+ DAE KG I+PGKS+L+E TS NTGIGLAF     IAA RGY+
Sbjct: 161 MVTDAEQKGFISPGKSVLVEPTSGNTGIGLAF-----IAASRGYR 200

>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A Length = 313

 Score =  101 bits (255), Expect = 2e-26
 Identities = 45/134 (33%), Positives = 58/134 (43%), Gaps = 46/134 (34%)

Query: 61  VLSHVVMGKHLIQ------------ASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSD 108
           VLS    G H IQ                +    V +E+A+  A++LA +EGLLVGISS 
Sbjct: 212 VLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEIITVGNEDALNVARRLAREEGLLVGISSG 271

Query: 109 AAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPS 168
           AA  A+++VA+ PEN   LIVV                                  +LP 
Sbjct: 272 AATVAALQVARRPENAGKLIVV----------------------------------VLPD 297

Query: 169 GGERYLSTELFDSI 182
            GERYLST LF  +
Sbjct: 298 FGERYLSTPLFADV 311

>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A Length = 313

 Score = 73.7 bits (182), Expect = 4e-16
 Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 6/45 (13%)

Query: 1  MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          M++ AE  GLI P  +I++E TS NTGI LA      + A RGY+
Sbjct: 54 MLQAAEQAGLIKPD-TIILEPTSGNTGIALAM-----VCAARGYR 92

>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* Length = 316

 Score =  101 bits (255), Expect = 2e-26
 Identities = 37/102 (36%), Positives = 49/102 (48%), Gaps = 34/102 (33%)

Query: 81  FQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFS 140
             V S+ A+ TA++L  +EG+L GISS AA AA+ ++AK+PE    LIVV          
Sbjct: 247 ETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLPEFADKLIVV---------- 296

Query: 141 FCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSI 182
                                   +LPS  ERYLST LF+ I
Sbjct: 297 ------------------------ILPSASERYLSTALFEGI 314

>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* Length = 316

 Score = 73.3 bits (181), Expect = 6e-16
 Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 6/45 (13%)

Query: 1  MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          M+  AE  G +T GK I ++ TS NTGI LA+     +AA RGYK
Sbjct: 49 MVWQAEKDGTLTKGKEI-VDATSGNTGIALAY-----VAAARGYK 87

>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* Length = 343

 Score = 99.2 bits (248), Expect = 3e-25
 Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 47/139 (33%)

Query: 61  VLSHVVMGKHLIQ------------ASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSD 108
           VL     G H IQ                +    + +++A + A+ +   +G++ G+SS 
Sbjct: 223 VLEGKAKGPHGIQGIGAGFIPDIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSG 282

Query: 109 AAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPS 168
           AA  A +K A+ PEN+   IV+                                  ++PS
Sbjct: 283 AAILAGLKEAEKPENEGKTIVI----------------------------------IVPS 308

Query: 169 GGERYLSTELFDSITHEAE 187
            GERYLST+L+  I  E  
Sbjct: 309 CGERYLSTDLYK-IKDEGT 326

>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* Length = 343

 Score = 71.8 bits (177), Expect = 2e-15
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 1   MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
           ++  A   G + PG  I IE TS NTGI L         AV GY+
Sbjct: 65  IVYQAIKDGRLKPGMEI-IESTSGNTGIALCQ-----AGAVFGYR 103

>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A* 3dwi_A* Length = 325

 Score = 96.5 bits (241), Expect = 2e-24
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 36/116 (31%)

Query: 81  FQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEND--RILIVVSLISYKLY 138
           + V + +A+   ++L H EG+  GIS+ A   A++ V         R  I +        
Sbjct: 242 YSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGVGAGALAAGERADIAL-------- 293

Query: 139 FSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETCLLIQV 194
                                     ++   G +YLST  +     +AET L  Q+
Sbjct: 294 --------------------------VVADAGWKYLSTGAYAGSLDDAETALEGQL 323

>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A* 3dwi_A* Length = 325

 Score = 69.6 bits (171), Expect = 1e-14
 Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 6/45 (13%)

Query: 1  MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          MI+ AE  GL+ PG +I +E TS NTGI LA       A ++GY+
Sbjct: 60 MIEQAEADGLLRPGATI-LEPTSGNTGISLAM-----AARLKGYR 98

>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* Length = 304

 Score = 96.4 bits (241), Expect = 2e-24
 Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 47/132 (35%)

Query: 61  VLSHVVMGKHLIQ------------ASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSD 108
           VLS   MG+H  Q             S  +   QV  E+A   A++LA +EGL +G+SS 
Sbjct: 206 VLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSG 265

Query: 109 AAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPS 168
               A+++VA+        +                                    + P 
Sbjct: 266 GIVWAALQVAR-ELGPGKRVAC----------------------------------ISPD 290

Query: 169 GGERYLSTELFD 180
           GG +YLST L+ 
Sbjct: 291 GGWKYLSTPLYA 302

>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* Length = 304

 Score = 74.1 bits (183), Expect = 3e-16
 Identities = 25/46 (54%), Positives = 33/46 (71%), Gaps = 6/46 (13%)

Query: 1  MIKDAEDKGLITPGK-SILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          MIKDAE++G++ PG   +++E TS NTGIGLA      IAA RGY+
Sbjct: 47 MIKDAEERGILRPGSGQVIVEPTSGNTGIGLAM-----IAASRGYR 87

>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} Length = 308

 Score = 91.8 bits (229), Expect = 9e-23
 Identities = 38/132 (28%), Positives = 53/132 (40%), Gaps = 47/132 (35%)

Query: 61  VLSHVVMGKHLIQ------------ASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSD 108
           VLS    G H IQ             S ++    V++EEA   A++ A +EG+L GISS 
Sbjct: 209 VLSGGKPGPHKIQGIGAGFVPDILDTSIYDGVITVTTEEAFAAARRAAREEGILGGISSG 268

Query: 109 AAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPS 168
           AA  A++KVAK        ++                                   ++PS
Sbjct: 269 AAIHAALKVAK-ELGKGKKVLA----------------------------------IIPS 293

Query: 169 GGERYLSTELFD 180
            GERYLST L+ 
Sbjct: 294 NGERYLSTPLYQ 305

>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} Length = 308

 Score = 70.6 bits (174), Expect = 5e-15
 Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 6/45 (13%)

Query: 1  MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          MI+ AE  G + PG +I +E TS NTGIGLA      +AA +GYK
Sbjct: 52 MIEAAEKAGKLKPGDTI-VEPTSGNTGIGLAM-----VAAAKGYK 90

>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* Length = 303

 Score = 88.3 bits (220), Expect = 2e-21
 Identities = 41/128 (32%), Positives = 48/128 (37%), Gaps = 47/128 (36%)

Query: 61  VLSHVVMGKHLIQ------------ASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSD 108
           VLS    GKH IQ             S  +    V  EEA E A+ LA KEGLLVGISS 
Sbjct: 210 VLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSG 269

Query: 109 AAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPS 168
           A  AA++KVA+    D   +V                                   + P 
Sbjct: 270 ANVAAALKVAQKLGPDA-RVVT----------------------------------VAPD 294

Query: 169 GGERYLST 176
             ERYLS 
Sbjct: 295 HAERYLSI 302

>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* Length = 303

 Score = 68.7 bits (169), Expect = 2e-14
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 8/45 (17%)

Query: 1  MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          MI DAE +GL+  G   ++E TS N GI +A      I A RG++
Sbjct: 54 MILDAEKRGLLKNG---IVEPTSGNMGIAIAM-----IGAKRGHR 90

>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 Length = 389

 Score = 89.3 bits (222), Expect = 2e-21
 Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 34/99 (34%)

Query: 81  FQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFS 140
            +V+ EEA+E   ++A  +GL++G S  AA  A  K A   + +    VV          
Sbjct: 316 AEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVV---------- 365

Query: 141 FCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELF 179
                                   ++P  G +YLS    
Sbjct: 366 ------------------------VVPDTGFKYLSLVQN 380

>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 Length = 389

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 8/45 (17%)

Query: 1   MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
           +I     +  +  G S++ + TSSN G+ L+      +A + GY+
Sbjct: 134 IISRLSRR--VEKG-SLVADATSSNFGVALSA-----VARLYGYR 170

>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* Length = 303

 Score = 86.0 bits (214), Expect = 1e-20
 Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 36/100 (36%)

Query: 81  FQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFS 140
             +   +A  T ++LA +EG+  G+SS  A A +++VA    N   ++V           
Sbjct: 230 LDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAA--ANPDAVVVA---------- 277

Query: 141 FCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFD 180
                                   ++   G+RYLST +F 
Sbjct: 278 ------------------------IICDRGDRYLSTGVFG 293

>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* Length = 303

 Score = 71.4 bits (176), Expect = 3e-15
 Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 6/45 (13%)

Query: 1  MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
          MI +AE +G I PG  + IE TS NTGI LA      IAA++GY+
Sbjct: 48 MIVEAEKRGEIKPGDVL-IEATSGNTGIALAM-----IAALKGYR 86

>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* Length = 435

 Score = 75.1 bits (185), Expect = 3e-16
 Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 35/100 (35%)

Query: 81  FQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFS 140
           F+ + EEA   A+ L  +EGLL G S+ +  A ++K A+  +  +   VV          
Sbjct: 346 FKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQEGQ-RCVV---------- 394

Query: 141 FCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFD 180
                                   +LP     Y++  L D
Sbjct: 395 ------------------------ILPDSVRNYMTKFLSD 410

>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* Length = 435

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 26/45 (57%), Positives = 30/45 (66%), Gaps = 6/45 (13%)

Query: 1   MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
           MI+DAE  G + PG +I IE TS NTGIGLA       AAVRGY+
Sbjct: 148 MIEDAERDGTLKPGDTI-IEPTSGNTGIGLAL-----AAAVRGYR 186

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 35/100 (35%)

Query: 81  FQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFS 140
            ++   +    +++L  +EGLL G SS  A  A+++ A+         VV          
Sbjct: 298 TKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHAALEHAR-KLKKGQRCVV---------- 346

Query: 141 FCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFD 180
                                   +LP G   Y++  + D
Sbjct: 347 ------------------------ILPDGIRNYMTKFVSD 362

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 67.4 bits (165), Expect = 1e-13
 Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 6/45 (13%)

Query: 1   MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK 45
           M++DAE++GL+ PG +I IE TS NTGIGLA        AV+GYK
Sbjct: 100 MVQDAEEQGLLKPGYTI-IEPTSGNTGIGLAM-----ACAVKGYK 138

>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Length = 486

 Score = 41.7 bits (98), Expect = 7e-05
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 85  SEEAIETAQQLAHKEGLLVGISSDAAAAASIKVA---KIPENDRILIVV 130
           +EE +  A   A   G+ +   +  A  A  K+     I   DR ++V 
Sbjct: 383 TEEELMDAMAQADSTGMFICPHTGVALTALFKLRNQGVIAPTDRTVVVS 431

>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Length = 352

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 79  YCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVA---KIPENDRILIVV 130
               VS  E +   + +A  EG+    +S A+ A  IK+         + +   +
Sbjct: 264 KIDAVSDSEILYAYKLIASTEGVFCEPASAASVAGLIKLVREGFFKGGEVVTCTL 318

>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Length = 351

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 79  YCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAK---IPENDRILIVV 130
               V+ EE +   + LA +EG+    +S AA A   K+ +   +     +++ +
Sbjct: 262 VIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFKLLREGRLEPESTVVLTL 316

>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Length = 360

 Score = 38.0 bits (89), Expect = 9e-04
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 79  YCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAK---IPENDRILIVV 130
                S EE +     +A  EG+ V  +S A+ A  +K      +     ++  V
Sbjct: 271 RFLAASDEEILAAYHLVARVEGVFVEPASAASIAGLLKAIDDGWVARGSTVVCTV 325

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	197
3vc3_A	344	Beta-cyanoalnine synthase; beta-cyanoalanine synth	100.0
4aec_A	430	Cysteine synthase, mitochondrial; lyase, cysteine	99.95
3tbh_A	334	O-acetyl serine sulfhydrylase; cysteine synthase,	99.95
2q3b_A	313	Cysteine synthase A; pyridoxal-5'-phosphate, sulph	99.94
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.93
1z7w_A	322	Cysteine synthase; transferase; HET: PLP; 2.20A {A	99.93
1jbq_A	435	B, cystathionine beta-synthase, serine sulfhydrase	99.93
3dwg_A	325	Cysteine synthase B; sulfur carrier protein comple	99.92
1y7l_A	316	O-acetylserine sulfhydrylase, O-acetylserine (thio	99.92
2pqm_A	343	Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8	99.91
2egu_A	308	Cysteine synthase; O-acetylserine sulfhydrase, str	99.91
1ve1_A	304	O-acetylserine sulfhydrylase; PLP, transferase, ri	99.91
2v03_A	303	Cysteine synthase B; pyridoxal phosphate, cysteine	99.91
1o58_A	303	O-acetylserine sulfhydrylase; TM0665, structural g	99.86
3aey_A	351	Threonine synthase; PLP, pyridoxal phosphate, lyas	99.74
2zsj_A	352	Threonine synthase; PLP dependent enzyme, lyase; H	99.74
3l6b_A	346	Serine racemase; pyridoxal phosphate, PLP, isomera	99.73
2d1f_A	360	Threonine synthase; amino acid synthesis, pyridoxa	99.73
1wkv_A	389	Cysteine synthase; homodimer, open alpha/beta fold	99.72
1p5j_A	372	L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo	99.67
1v8z_A	388	Tryptophan synthase beta chain 1; beta+alpha, rike	99.65
2gn0_A	342	Threonine dehydratase catabolic; TDCB, biodegradat	99.65
2rkb_A	318	Serine dehydratase-like; PLP bound enzyme, enzyme	99.64
1v71_A	323	Serine racemase, hypothetical protein C320.14 in c	99.63
1ve5_A	311	Threonine deaminase; riken structural genomics/Pro	99.61
3ss7_X	442	D-serine dehydratase; type II fold, ALFA,beta-elim	99.61
1qop_B	396	Tryptophan synthase beta chain; lyase, carbon-oxyg	99.58
1e5x_A	486	Threonine synthase; threonine biosynthesis, PLP en	99.55
1j0a_A	325	1-aminocyclopropane-1-carboxylate deaminase; PLP d	99.55
2o2e_A	422	Tryptophan synthase beta chain; amino-acid biosynt	99.54
3iau_A	366	Threonine deaminase; pyridoxal phosphate, amino-ac	99.53
4d9i_A	398	Diaminopropionate ammonia-lyase; fold type II PLP-	99.52
1x1q_A	418	Tryptophan synthase beta chain; structural genomic	99.52
4h27_A	364	L-serine dehydratase/L-threonine deaminase; PLP de	99.51
4d9b_A	342	D-cysteine desulfhydrase; fold type II PLP-depende	99.5
1f2d_A	341	1-aminocyclopropane-1-carboxylate deaminase; carbo	99.48
1tzj_A	338	ACC deaminase, 1-aminocyclopropane-1-carboxylate d	99.47
1tdj_A	514	Biosynthetic threonine deaminase; allostery, coope	99.44
1vb3_A	428	Threonine synthase; PLP-dependent enzyme, lyase; H	99.42
1kl7_A	514	Threonine synthase; threonine synthesis, pyridoxal	99.38
4f4f_A	468	Threonine synthase; structural genomics, niaid, na	98.72
3v7n_A	487	Threonine synthase; ssgcid, structural genomics, s	97.21
3v7n_A	487	Threonine synthase; ssgcid, structural genomics, s	95.95
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	90.85
3gms_A	340	Putative NADPH:quinone reductase; structural genom	90.15
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	89.42
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	88.85
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	88.69
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	88.33
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	84.89
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	84.41
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	83.64
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	83.15
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	82.51
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	80.95
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	80.7
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	80.37

>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*

Probab=100.00  E-value=2.3e-33  Score=248.83  Aligned_cols=150  Identities=49%  Similarity=0.688  Sum_probs=132.9

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-------------------------------   49 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-------------------------------   49 (197)
                      ||.+|+++|+|+||..+|||+||||+|+|+|++|+     .+|++++++                               
T Consensus        73 ~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa-----~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~~~~~~  147 (344)
T 3vc3_A           73 MITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAA-----MKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKGMGG  147 (344)
T ss_dssp             HHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHH-----HHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHH
T ss_pred             HHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHH-----HcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCCCcchH
Confidence            58899999999999645999999999999999999     999999999                               


Q ss_pred             --------------------------eccccc-----------------------------------------------C
Q 043034           50 --------------------------PTRHLH-----------------------------------------------H   56 (197)
Q Consensus        50 --------------------------p~~h~~-----------------------------------------------p   56 (197)
                                                +.+|+.                                               |
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~np~~~~a~~~t~g~EI~eq~~~~~d~vv~~vGgGG~~~Gi~~~~k~~~p~v~vigVep  227 (344)
T 3vc3_A          148 TVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGVEP  227 (344)
T ss_dssp             HHHHHHHHHHHSTTEECCCTTTCHHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             HHHHHHHHHhhccCceeccccccchhHHHHHHHHHHHHHHHhCCCceEEEEecCCccchHHHhhhhHhhCCCceEEEEcC
Confidence                                      011111                                               5


Q ss_pred             CCcceecccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCC
Q 043034           57 SEYVVLSHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEND  124 (197)
Q Consensus        57 ~~~~~~~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~  124 (197)
                      .++..+.++.++++.++|+|            +|+++.|+|+|+++++|+|+++||+++|+||||+++||++++++...+
T Consensus       228 ~~s~~l~~~~~~~~~i~g~g~~~~~~~~~~~~~d~~v~v~d~eai~a~~~L~~~eGi~v~~ssga~~~aAl~~a~~~~~~  307 (344)
T 3vc3_A          228 SESNVLNGGKPGPHHITGNGVGFKPDILDLDVMEKVLEVSSEDAVNMARVLALKEGLMVGISSGANTVAALRLAQLPENK  307 (344)
T ss_dssp             GGGCGGGTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHTSGGGT
T ss_pred             CCChhhcCCCCCCeeEecccccccCcccchhhceEEEEECHHHHHHHHHHHHHHCCCEEehhHHHHHHHHHHHhccccCC
Confidence            56667777788899999988            899999999999999999999999999999999999999999864457


Q ss_pred             CceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCchhHHHHhhc
Q 043034          125 RILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETC  189 (197)
Q Consensus       125 g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~~~~~~~~~  189 (197)
                      +++||+                                  |+||+|+|||||.||++|++|.+..
T Consensus       308 g~~VV~----------------------------------il~d~G~rYlst~~~~~~~~e~~~~  338 (344)
T 3vc3_A          308 GKLIVT----------------------------------VHPSFGERYLSSVLFQELRQEAENM  338 (344)
T ss_dssp             TCEEEE----------------------------------EECBBGGGGTTSTTTHHHHHHHHTC
T ss_pred             CCEEEE----------------------------------EECCCchhhccchhhHHHHHHhccC
Confidence            899999                                  9999999999999999999998754

>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}

Probab=99.95  E-value=8.1e-28  Score=221.17  Aligned_cols=151  Identities=59%  Similarity=0.764  Sum_probs=125.9

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-------------------------------   49 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-------------------------------   49 (197)
                      ||.+|+++|.++||+++|||+||||+|+|+|++|+     .+|++++++                               
T Consensus       161 ~i~~A~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa-----~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~~~~~~~  235 (430)
T 4aec_A          161 MVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAA-----SRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTG  235 (430)
T ss_dssp             HHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHH-----HHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHH
T ss_pred             HHHHHHHcCCCCCCCcEEEEECCCHHHHHHHHHHH-----HhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECCCCChHH
Confidence            57899999999999555999999999999999999     999999999                               


Q ss_pred             --------------------------eccccc-----------------------------------------------C
Q 043034           50 --------------------------PTRHLH-----------------------------------------------H   56 (197)
Q Consensus        50 --------------------------p~~h~~-----------------------------------------------p   56 (197)
                                                |.+||.                                               |
T Consensus       236 a~~~a~el~~~~~~~~~i~~~~np~~~~aG~~T~a~EI~eQl~~~~D~vVvpvG~GGtlaGi~~~lk~~~p~~kVigVep  315 (430)
T 4aec_A          236 AVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEP  315 (430)
T ss_dssp             HHHHHHHHHHHSTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTSCEEEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred             HHHHHHHHHHhcCCcEEecCCCCccHHHHHHHHHHHHHHHHcCCCCCEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEEe
Confidence                                      012221                                               3


Q ss_pred             CCcceecccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCC
Q 043034           57 SEYVVLSHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEND  124 (197)
Q Consensus        57 ~~~~~~~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~  124 (197)
                      .++..+.++.++++.++||+            +|+++.|+|+|+++++++|+++|||++|||||++++||++++++...+
T Consensus       316 ~~s~~l~~g~~~~~~i~Gl~~~~~p~~l~~~~vd~~v~Vsd~ea~~a~r~La~~eGi~vepssGaa~aAal~la~~~~~~  395 (430)
T 4aec_A          316 TESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENA  395 (430)
T ss_dssp             GGGCGGGTCCCCCCSCTTSCCSSCCTTCCTTTCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHTTSGGGT
T ss_pred             CCCcHhhCCCccceeehhccCCCCcHHHHHHhCCeEEEECHHHHHHHHHHHHHHCCCEEehHHHHHHHHHHHHHHhcCCC
Confidence            33344444455667888887            899999999999999999999999999999999999999998765346


Q ss_pred             CceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCchhHHHHhhcc
Q 043034          125 RILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETCL  190 (197)
Q Consensus       125 g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~~~~~~~~~~  190 (197)
                      +++||+                                  |+||+|+|||+|.+|++|.++.+...
T Consensus       396 g~~VV~----------------------------------Il~d~G~rylst~~~~~~~~~~~~~~  427 (430)
T 4aec_A          396 GKLIAV----------------------------------VFPSFGERYLSTPLFQSIREEVEKMQ  427 (430)
T ss_dssp             TCEEEE----------------------------------EECBBGGGGTTSHHHHHHHHHC----
T ss_pred             cCeEEE----------------------------------EECCCCccccchhhhhhhhhhhhcCc
Confidence            889999                                  99999999999999999998887543

>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*

Probab=99.95  E-value=1.3e-27  Score=210.54  Aligned_cols=151  Identities=39%  Similarity=0.556  Sum_probs=122.6

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-------------------------------   49 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-------------------------------   49 (197)
                      ||.+|+++|.|+||+++||++||||+|+++|++|+     .+|++++++                               
T Consensus        58 ~i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~-----~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~  132 (334)
T 3tbh_A           58 IYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGA-----IRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALGMKG  132 (334)
T ss_dssp             HHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHH-----HHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHH
T ss_pred             HHHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHH-----HhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCchH
Confidence            57899999999999984599999999999999999     999999998                               


Q ss_pred             --------------------------eccccc-----------------------------------------------C
Q 043034           50 --------------------------PTRHLH-----------------------------------------------H   56 (197)
Q Consensus        50 --------------------------p~~h~~-----------------------------------------------p   56 (197)
                                                |.+||.                                               |
T Consensus       133 ~~~~a~~~~~~~~~~~~i~~~~np~n~~~g~~t~~~Ei~~q~~~~~d~vv~pvG~GG~~aGi~~~~k~~~p~~~vigVe~  212 (334)
T 3tbh_A          133 AVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTGGTLTGVARALKKMGSHARIVAVEP  212 (334)
T ss_dssp             HHHHHHHHHHHCTTEEECCTTTCHHHHHHHHHTHHHHHHHHTTSCCSEEEEECSSSHHHHHHHHHHHHTTCCCEEEEEEE
T ss_pred             HHHHHHHHHHhCCCEEECCccCChhHHHHHHHHHHHHHHHHhCCCCCEEEeccCCcHhHHHHHHHHHHhCCCCEEEEEee
Confidence                                      011221                                               2


Q ss_pred             CCcceecccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCC
Q 043034           57 SEYVVLSHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEND  124 (197)
Q Consensus        57 ~~~~~~~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~  124 (197)
                      .++..+..+.++++.++|++            +|+++.|+|+|+++++|+|++++||++|||||++++|+++++++...+
T Consensus       213 ~~~~~~~~g~~~~~~~~gi~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~egi~~epssgaa~aa~~~~~~~~~~~  292 (334)
T 3tbh_A          213 TESPVLSGGKPGPHKIQGIGPGFVPDVLDRSLIDEVLCVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKIAERPEME  292 (334)
T ss_dssp             TTSCTTTTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHSGGGT
T ss_pred             CCchHhhCCCcCCeecCCCCCCcCCHHHHHHhCCEEEEECHHHHHHHHHHHHHHcCeEEcHHHHHHHHHHHHHHHhccCC
Confidence            23333333344566777776            899999999999999999999999999999999999999998763236


Q ss_pred             CceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCchhHHHHhhcc
Q 043034          125 RILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETCL  190 (197)
Q Consensus       125 g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~~~~~~~~~~  190 (197)
                      +++||+                                  ++||+|+||+||.+|++.+.|.+...
T Consensus       293 g~~Vv~----------------------------------v~t~~g~ky~~~~~~~~~~~~~~~~~  324 (334)
T 3tbh_A          293 GKTIVT----------------------------------VIPSFGERYLSTTLYRSVRDEVSSLP  324 (334)
T ss_dssp             TCEEEE----------------------------------EECBBGGGGTTSGGGTHHHHC-----
T ss_pred             cCeEEE----------------------------------EECCCCccccCchhhhhhHHHhhhcc
Confidence            889999                                  99999999999999999998887654

>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A

Probab=99.94  E-value=1.5e-26  Score=200.25  Aligned_cols=144  Identities=47%  Similarity=0.652  Sum_probs=110.1

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-----------------------e-------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-----------------------P-------   50 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-----------------------p-------   50 (197)
                      ||.+|+++|.++||++ |||+||||+|+|+|++|+     .+|++++++                       +       
T Consensus        54 ~l~~a~~~g~~~~g~~-vv~assGN~g~alA~~a~-----~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~  127 (313)
T 2q3b_A           54 MLQAAEQAGLIKPDTI-ILEPTSGNTGIALAMVCA-----ARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADGMSG  127 (313)
T ss_dssp             HHHHHHHTTCCCTTCE-EEEECSSHHHHHHHHHHH-----HHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHH
T ss_pred             HHHHHHHcCCCCCCCE-EEEeCCCHHHHHHHHHHH-----HcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCCCCHHH
Confidence            5788999999999998 999999999999999999     999999998                       0       


Q ss_pred             ---------------------------ccccc-----------------------------------------------C
Q 043034           51 ---------------------------TRHLH-----------------------------------------------H   56 (197)
Q Consensus        51 ---------------------------~~h~~-----------------------------------------------p   56 (197)
                                                 ..||.                                               |
T Consensus       128 ~~~~a~~l~~~~~~~~~~~~~~n~~~~~~~~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vi~ve~  207 (313)
T 2q3b_A          128 AIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTGGTITGVAQVIKERKPSARFVAVEP  207 (313)
T ss_dssp             HHHHHHHHHHHCTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             HHHHHHHHHHhCCCEEeCCCCCChhhHHHHHHHHHHHHHHHcCCCCCEEEEccCcchhHHHHHHHHHHhCCCCEEEEEee
Confidence                                       11211                                               2


Q ss_pred             CCcceecccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCC
Q 043034           57 SEYVVLSHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEND  124 (197)
Q Consensus        57 ~~~~~~~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~  124 (197)
                      .++..+.....+++.++|++            +|+++.|+|+|+++++|+|++++||++|||||++++|+++++++...+
T Consensus       208 ~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~~~~~  287 (313)
T 2q3b_A          208 AASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENA  287 (313)
T ss_dssp             TTSCTTTTCCCCCCCCTTSCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHTCGGGT
T ss_pred             CCCccccCCCCCCcccCCcCCCCCChhhhHhhccEEEEECHHHHHHHHHHHHHHcCceEchHHHHHHHHHHHHHHhcCCC
Confidence            22222222233456677765            799999999999999999999999999999999999999998764225


Q ss_pred             CceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCchhHH
Q 043034          125 RILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITH  184 (197)
Q Consensus       125 g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~~~~  184 (197)
                      +++||+                                  +++|+|+||+++.+|++|++
T Consensus       288 ~~~vv~----------------------------------v~~~~g~ky~~~~~~~~~~~  313 (313)
T 2q3b_A          288 GKLIVV----------------------------------VLPDFGERYLSTPLFADVAD  313 (313)
T ss_dssp             TCEEEE----------------------------------EECBBSGGGC----------
T ss_pred             CCEEEE----------------------------------EECCCCcccccchhhhhhhC
Confidence            789999                                  99999999999999998863

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.93  E-value=5.8e-26  Score=209.93  Aligned_cols=144  Identities=31%  Similarity=0.466  Sum_probs=119.5

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-----------------------ec------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-----------------------PT------   51 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-----------------------p~------   51 (197)
                      ||.+|+++|.++||++ |||+||||+|+|+|++|+     .+|++++++                       |.      
T Consensus       100 ~i~~a~~~g~~~~g~~-vv~~ssGN~g~a~A~~a~-----~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~  173 (527)
T 3pc3_A          100 MVQDAEEQGLLKPGYT-IIEPTSGNTGIGLAMACA-----VKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPTEAAYDS  173 (527)
T ss_dssp             HHHHHHHHTCCCTTCE-EEEECSSHHHHHHHHHHH-----HHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTTSCTTS
T ss_pred             HHHHHHHcCCCCCCCE-EEEeCCCHHHHHHHHHHH-----HhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCCccc
Confidence            5789999999999998 999999999999999999     999999998                       10      


Q ss_pred             -------------------------------cccc---------------------------------------------
Q 043034           52 -------------------------------RHLH---------------------------------------------   55 (197)
Q Consensus        52 -------------------------------~h~~---------------------------------------------   55 (197)
                                                     +||.                                             
T Consensus       174 ~~~~~~~a~~~~~~~~~~~~~~~~~n~~n~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~GG~~~G~~~~~k~~~p~~~vig  253 (527)
T 3pc3_A          174 PEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVG  253 (527)
T ss_dssp             TTSHHHHHHHHHHHSSSEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHHHCTTSEEEE
T ss_pred             HHHHHHHHHHHHHhCCCcEecCCCCCcchHHHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEE
Confidence                                           1111                                             


Q ss_pred             --CCCccee-----cccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHH
Q 043034           56 --HSEYVVL-----SHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIK  116 (197)
Q Consensus        56 --p~~~~~~-----~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlk  116 (197)
                        |.++...     .....+++.++|+|            +|+++.|+|+|+++++|+|+++|||++|||||++++|+++
T Consensus       254 ve~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~p~~~~~~~~d~~~~V~d~e~~~a~r~l~~~eGi~~~pssa~alaaal~  333 (527)
T 3pc3_A          254 VDPYGSILARPAELNKTDVQFYEVEGIGYDFPPTVFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHAALE  333 (527)
T ss_dssp             EEETTCCCSSSGGGGCCSCCCCSCCSCCCSSCCTTCCGGGCCEEEEECGGGTHHHHHHHHHHHCCCBCHHHHHHHHHHHH
T ss_pred             EecCCcccccchhhcCCCCCceeccccCCCCCCcccchhhCcEEEEECHHHHHHHHHHHHHHcCceEcHHHHHHHHHHHH
Confidence              1222111     11122456677877            8999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCCceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCchhHHH
Q 043034          117 VAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHE  185 (197)
Q Consensus       117 lA~~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~~~~~  185 (197)
                      +++++. ++++||+                                  ++||+|+|||++.++++|..+
T Consensus       334 ~~~~~~-~~~~vv~----------------------------------i~~d~g~ryls~~~~~~~l~~  367 (527)
T 3pc3_A          334 HARKLK-KGQRCVV----------------------------------ILPDGIRNYMTKFVSDNWMEA  367 (527)
T ss_dssp             HHTTCC-TTCEEEE----------------------------------EECBBGGGGTTTTTSHHHHHH
T ss_pred             HHHHcC-CCCeEEE----------------------------------EEcCcchhhHhhhhcHHHHHh
Confidence            998763 6889999                                  999999999999999888755

>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*

Probab=99.93  E-value=7.7e-26  Score=196.88  Aligned_cols=150  Identities=57%  Similarity=0.739  Sum_probs=122.9

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-------------------------------   49 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-------------------------------   49 (197)
                      ||.+|+++|.++||+.+|||+||||+|+|+|++|+     .+|++++++                               
T Consensus        53 ~l~~a~~~G~~~~~~~~vv~assGN~g~alA~aa~-----~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~  127 (322)
T 1z7w_A           53 MISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAA-----AKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKG  127 (322)
T ss_dssp             HHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHH-----HHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHH
T ss_pred             HHHHHHHcCCCCCCCCEEEEeCCCHHHHHHHHHHH-----HcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCHHH
Confidence            57889999999999633999999999999999999     999999998                               


Q ss_pred             --------------------------eccccc-----------------------------------------------C
Q 043034           50 --------------------------PTRHLH-----------------------------------------------H   56 (197)
Q Consensus        50 --------------------------p~~h~~-----------------------------------------------p   56 (197)
                                                |.+||.                                               |
T Consensus       128 ~~~~a~~~~~~~~~~~~i~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigve~  207 (322)
T 1z7w_A          128 AIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEP  207 (322)
T ss_dssp             HHHHHHHHHHHCTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             HHHHHHHHHHhCCCeEeCCCCCChhHHHHHHHHHHHHHHHHhcCCCCEEEEecCccHhHHHHHHHHHHcCCCCEEEEEec
Confidence                                      011211                                               2


Q ss_pred             CCcceecccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCC
Q 043034           57 SEYVVLSHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEND  124 (197)
Q Consensus        57 ~~~~~~~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~  124 (197)
                      .++..+.++.++++.++|++            +|+++.|+|+|+++++++|++++|+++|||||++++|+++++++...+
T Consensus       208 ~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssga~~aaa~~~~~~~~~~  287 (322)
T 1z7w_A          208 VESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENA  287 (322)
T ss_dssp             GGGCGGGTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHTSGGGT
T ss_pred             CCCccccCCCCCCcccCcCcCCCCChhhhHHhCCEEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHHHHHhcCCC
Confidence            22323333334456677765            799999999999999999999999999999999999999998764335


Q ss_pred             CceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCchhHHHHhhc
Q 043034          125 RILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETC  189 (197)
Q Consensus       125 g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~~~~~~~~~  189 (197)
                      +++||+                                  ++||+|.||+++.+|++|+.+.+..
T Consensus       288 ~~~vv~----------------------------------i~tg~g~k~~~~~~~~~~~~~~~~~  318 (322)
T 1z7w_A          288 GKLFVA----------------------------------IFPSFGERYLSTVLFDATRKEAEAM  318 (322)
T ss_dssp             TCEEEE----------------------------------EECBBGGGGTTSGGGHHHHHHHHTC
T ss_pred             CCeEEE----------------------------------EECCCCcccccchhhhHHHHhcccc
Confidence            789999                                  9999999999999999998876544

>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*

Probab=99.93  E-value=1.1e-25  Score=206.77  Aligned_cols=145  Identities=33%  Similarity=0.474  Sum_probs=118.7

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-----------------------e-------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-----------------------P-------   50 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-----------------------p-------   50 (197)
                      ||.+|+++|.|+||++ |||+||||+|+|||++|+     .+||+++++                       +       
T Consensus       148 ~i~~a~~~G~l~~g~t-VV~aSsGN~G~AlA~aaa-----~~Gi~~~IvmP~~~s~~k~~~l~~~GAeVv~v~~~~~~d~  221 (435)
T 1jbq_A          148 MIEDAERDGTLKPGDT-IIEPTSGNTGIGLALAAA-----VRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDS  221 (435)
T ss_dssp             HHHHHHHHTCSCTTCE-EEEECSSHHHHHHHHHHH-----HHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC------
T ss_pred             HHHHHHHcCCCCCCCE-EEEeCCCHHHHHHHHHHH-----HcCCeEEEEeCCCCCHHHHHHHHhCCCEEEEecCCCCcch
Confidence            5789999999999998 999999999999999999     999999998                       1       


Q ss_pred             ------------------------------ccccc---------------------------------------------
Q 043034           51 ------------------------------TRHLH---------------------------------------------   55 (197)
Q Consensus        51 ------------------------------~~h~~---------------------------------------------   55 (197)
                                                    .+||.                                             
T Consensus       222 ~~~~~~~a~~la~~~~~~~~i~q~~n~~n~~ag~~t~a~EI~eQl~~~~D~vVvpvGtGGtlaGi~~~lk~~~p~vrVig  301 (435)
T 1jbq_A          222 PESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIG  301 (435)
T ss_dssp             -CCHHHHHHHHHHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred             HHHHHHHHHHHHHhcCCeEEeCccCCcccHHHHHHHHHHHHHHHcCCCCCEEEEecCCcHhHHHHHHHHHHhCCCCEEEE
Confidence                                          01111                                             


Q ss_pred             --CCCcceec-----ccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHH
Q 043034           56 --HSEYVVLS-----HVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIK  116 (197)
Q Consensus        56 --p~~~~~~~-----~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlk  116 (197)
                        |.++..+.     .....++.++|+|            +|+++.|+|+|+++++|+|+++|||++|+|||++++|+++
T Consensus       302 Vep~gs~~~~~~~l~~~~~~~~~~~gig~~~~~~~l~~~~vd~~~~Vsd~ea~~a~r~La~~eGilve~ssgaalaaa~~  381 (435)
T 1jbq_A          302 VDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVK  381 (435)
T ss_dssp             EEETTCSCSSSGGGGCCSCCCCSCCSCCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHSCCCBCHHHHHHHHHHHH
T ss_pred             EecCCchhhchhhhhcCCCcceeecccccCccchhhhhhhccceEEeCHHHHHHHHHHHHHHcCCEEcHHHHHHHHHHHH
Confidence              11111110     0011234566665            7899999999999999999999999999999999999999


Q ss_pred             HhcCCCCCCceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCchhHHHH
Q 043034          117 VAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEA  186 (197)
Q Consensus       117 lA~~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~~~~~~  186 (197)
                      +++++. ++++||+                                  |+||+|+||+++.++|+|+.+.
T Consensus       382 ~~~~~~-~g~~VV~----------------------------------iltd~g~ky~~~~~~~~w~~~~  416 (435)
T 1jbq_A          382 AAQELQ-EGQRCVV----------------------------------ILPDSVRNYMTKFLSDRWMLQK  416 (435)
T ss_dssp             HGGGCC-TTCEEEE----------------------------------EECBBGGGGTTTTTCHHHHHHT
T ss_pred             HHHHcC-CCCeEEE----------------------------------EEcCCcccccchhhccHHHHhc
Confidence            998763 6889999                                  9999999999999999998865

>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*

Probab=99.92  E-value=6e-26  Score=198.99  Aligned_cols=154  Identities=29%  Similarity=0.412  Sum_probs=121.3

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-e-----------------------------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-P-----------------------------   50 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-p-----------------------------   50 (197)
                      ||.+|+++|.++||++ ||++||||+|+++|++|+     .+|++++++ |                             
T Consensus        60 ~l~~a~~~g~l~~~~~-vv~aSsGN~g~alA~aa~-----~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~  133 (325)
T 3dwg_A           60 MIEQAEADGLLRPGAT-ILEPTSGNTGISLAMAAR-----LKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGSNT  133 (325)
T ss_dssp             HHHHHHHTTCCCTTCE-EEEECSSHHHHHHHHHHH-----HHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECSTTTHHH
T ss_pred             HHHHHHHcCCCCCCCE-EEEeCCcHHHHHHHHHHH-----HcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCHHH
Confidence            5788999999999998 999999999999999999     999999998 0                             


Q ss_pred             ---------------------------ccccc----------CC-Cccee------------------------ccccc-
Q 043034           51 ---------------------------TRHLH----------HS-EYVVL------------------------SHVVM-   67 (197)
Q Consensus        51 ---------------------------~~h~~----------p~-~~~~~------------------------~~~~~-   67 (197)
                                                 .+||.          +. ...+.                        -++++ 
T Consensus       134 ~~~~a~~l~~~~~~~~~~~~~~np~~~~~g~~t~~~Ei~~q~~~~d~vv~pvG~GG~~aGi~~~~k~~~p~~~vigVe~~  213 (325)
T 3dwg_A          134 AVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADLPEITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEPR  213 (325)
T ss_dssp             HHHHHHHHHHHCTTSBCCCTTTCHHHHHHHHHTHHHHHHHHCTTCCEEEEECSSSHHHHHHHHHHHHHSTTCEEEEEEEE
T ss_pred             HHHHHHHHHHhCCCeEeCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEeeC
Confidence                                       01111          00 00000                        00000 


Q ss_pred             c---cccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCce--EEE
Q 043034           68 G---KHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRIL--IVV  130 (197)
Q Consensus        68 ~---~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~--VVt  130 (197)
                      +   .+.+++++            +|+++.|+|+|+++++|+|++++||++|||||++++|+++++++...++++  ||+
T Consensus       214 ~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~egi~~epssa~a~aa~~~~~~~~~~~g~~~~Vv~  293 (325)
T 3dwg_A          214 YGEGVYALRNMDEGFVPELYDPEILTARYSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGVGAGALAAGERADIAL  293 (325)
T ss_dssp             CCGGGGCCSSGGGCCCCTTCCGGGCSEEEEEEHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCcchhccCcccCCcCcccccHhhCCeEEEECHHHHHHHHHHHHHHcCceechhHHHHHHHHHHHHHHhccCCCCCeEEE
Confidence            0   13445554            899999999999999999999999999999999999999998754224556  999


Q ss_pred             eecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCchhHHHHhhccchhc
Q 043034          131 SLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETCLLIQV  194 (197)
Q Consensus       131 ~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~~~~~~~~~~~~~~  194 (197)
                                                        ++||+|+||+||.+|++...+.|..++.|.
T Consensus       294 ----------------------------------i~~g~g~ky~~~~~~~~~~~~~~~~~~~~~  323 (325)
T 3dwg_A          294 ----------------------------------VVADAGWKYLSTGAYAGSLDDAETALEGQL  323 (325)
T ss_dssp             ----------------------------------EECBBGGGGGGGTTTSSCHHHHHHHHTTCC
T ss_pred             ----------------------------------EECCCCccccCchhhcCCcchhHHHHHHhh
Confidence                                              999999999999889888999988887764

>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*

Probab=99.92  E-value=5e-25  Score=191.00  Aligned_cols=143  Identities=46%  Similarity=0.664  Sum_probs=112.8

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-------------------------------   49 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-------------------------------   49 (197)
                      ||.+|+++|.++||++ |||+||||+|+|+|++|+     .+|++++++                               
T Consensus        49 ~i~~a~~~g~~~~~~~-vv~~ssGN~g~a~A~~a~-----~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~  122 (316)
T 1y7l_A           49 MVWQAEKDGTLTKGKE-IVDATSGNTGIALAYVAA-----ARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKG  122 (316)
T ss_dssp             HHHHHHHTTSSCTTCE-EEESCCSHHHHHHHHHHH-----HHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHH
T ss_pred             HHHHHHHcCCCCCCCE-EEEeCCcHHHHHHHHHHH-----HcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCCHHH
Confidence            5788999999999998 999999999999999999     999999998                               


Q ss_pred             ------------ecc-cc-c------------------------------------------------------------
Q 043034           50 ------------PTR-HL-H------------------------------------------------------------   55 (197)
Q Consensus        50 ------------p~~-h~-~------------------------------------------------------------   55 (197)
                                  +.. ++ +                                                            
T Consensus       123 ~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~~vi~v  202 (316)
T 1y7l_A          123 AIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAV  202 (316)
T ss_dssp             HHHHHHHHHHHCTTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHTSCCCCEEEEE
T ss_pred             HHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCCccccHHHHHHHHHHhCCCCCEEEEE
Confidence                        111 11 0                                                            


Q ss_pred             -CCCcceecccc------cccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHH
Q 043034           56 -HSEYVVLSHVV------MGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIK  116 (197)
Q Consensus        56 -p~~~~~~~~~~------~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlk  116 (197)
                       |.++..+.+..      .+++.++|++            +|+++.|+|+|+++++++|++++||++|||||++++|+++
T Consensus       203 e~~~~~~~~~~~~g~~~~~~~~~~~gi~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epssa~~laa~~~  282 (316)
T 1y7l_A          203 EPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADR  282 (316)
T ss_dssp             EETTSCHHHHHHHTCCCCCCCCSCTTSCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHH
T ss_pred             ecCCCccccccccCCccCCCCcccCcCCCCCCCchhhHhhCCEEEEECHHHHHHHHHHHHHhhCCeEcHHHHHHHHHHHH
Confidence             11111111100      1345566765            7999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCCceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCchhH
Q 043034          117 VAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSIT  183 (197)
Q Consensus       117 lA~~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~~~  183 (197)
                      ++++...++++||+                                  +++|+|.||+++.+|++|-
T Consensus       283 ~~~~~~~~~~~vv~----------------------------------i~tg~g~k~~~~~~~~~~~  315 (316)
T 1y7l_A          283 LAKLPEFADKLIVV----------------------------------ILPSASERYLSTALFEGIE  315 (316)
T ss_dssp             HHTSGGGTTCEEEE----------------------------------EECBBCSSCCCTTTC----
T ss_pred             HHHhcCCCCCeEEE----------------------------------EECCCCcccCCcccccccc
Confidence            98765225789999                                  9999999999999999873

>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*

Probab=99.91  E-value=7.2e-25  Score=193.42  Aligned_cols=145  Identities=36%  Similarity=0.523  Sum_probs=118.5

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-------------------------------   49 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-------------------------------   49 (197)
                      ||.+|+++|.++||++ |||+||||+|+|+|++|+     .+|++++++                               
T Consensus        65 ~l~~a~~~g~~~~g~~-vv~aSsGN~g~alA~aa~-----~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~  138 (343)
T 2pqm_A           65 IVYQAIKDGRLKPGME-IIESTSGNTGIALCQAGA-----VFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGKKGMPG  138 (343)
T ss_dssp             HHHHHHHHTSSCTTCE-EEEECSSHHHHHHHHHHH-----HHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHH
T ss_pred             HHHHHHHcCCCCCCCE-EEEECCcHHHHHHHHHHH-----HcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCHHH
Confidence            5788999999999997 999999999999999999     999999998                               


Q ss_pred             ------------ecc---------------ccc----------------------------------------------C
Q 043034           50 ------------PTR---------------HLH----------------------------------------------H   56 (197)
Q Consensus        50 ------------p~~---------------h~~----------------------------------------------p   56 (197)
                                  +..               ||.                                              |
T Consensus       139 ~~~~a~~~~~~~~~~y~~~~~~~n~~n~~~g~~t~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigVe~  218 (343)
T 2pqm_A          139 AIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTANEIWEDTDGEVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEP  218 (343)
T ss_dssp             HHHHHHHHHHHSTTTEEECCTTTCHHHHHHHHHHHHHHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             HHHHHHHHHHhCCCcEEECCCCCChhHHHHHHHHHHHHHHHcCCCCCEEEEecCCchhHHHHHHHHHHcCCCCEEEEEec
Confidence                        111               110                                              1


Q ss_pred             CCcceecccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCC
Q 043034           57 SEYVVLSHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEND  124 (197)
Q Consensus        57 ~~~~~~~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~  124 (197)
                      .++..+.....+++.++|++            +|+++.|+|+|+++++|+|++++|+++|||||++++|+++++++...+
T Consensus       219 ~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~~~~~  298 (343)
T 2pqm_A          219 EESAVLEGKAKGPHGIQGIGAGFIPDIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKEAEKPENE  298 (343)
T ss_dssp             GGGCTTTTCCCCCCCCTTCCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHTSGGGT
T ss_pred             CCCcccccCCCCCeecCccCCCCCCHHHHHHhCCeEEEECHHHHHHHHHHHHHHhCCeEchhHHHHHHHHHHHHHhcCCC
Confidence            11112222223345677765            799999999999999999999999999999999999999998764235


Q ss_pred             CceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCchhHHH
Q 043034          125 RILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHE  185 (197)
Q Consensus       125 g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~~~~~  185 (197)
                      +++||+                                  +++|+|+||+++.+|++|.+.
T Consensus       299 ~~~vv~----------------------------------i~tg~g~ky~~~~~~~~~~~~  325 (343)
T 2pqm_A          299 GKTIVI----------------------------------IVPSCGERYLSTDLYKIKDEG  325 (343)
T ss_dssp             TCEEEE----------------------------------EECBBGGGGTTSSTTTSCCCS
T ss_pred             CCeEEE----------------------------------EEcCCCccccchhhhhhHhhc
Confidence            789999                                  999999999999999998754

>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}

Probab=99.91  E-value=1e-24  Score=188.43  Aligned_cols=139  Identities=43%  Similarity=0.610  Sum_probs=105.7

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-------------------------------   49 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-------------------------------   49 (197)
                      ||.+|+++|.++||++ |||+||||+|+++|++|+     .+|++++++                               
T Consensus        52 ~l~~a~~~g~~~~g~~-vv~assGN~g~a~A~~a~-----~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~  125 (308)
T 2egu_A           52 MIEAAEKAGKLKPGDT-IVEPTSGNTGIGLAMVAA-----AKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQGMRG  125 (308)
T ss_dssp             HHHHHHHTTCCCTTCE-EEEECCHHHHHHHHHHHH-----HHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGGGHHHH
T ss_pred             HHHHHHHcCCCCCCCE-EEEeCCCHHHHHHHHHHH-----HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCHHH
Confidence            5788999999999998 999999999999999999     999999998                               


Q ss_pred             -------------------------eccccc-----------------------------------------------CC
Q 043034           50 -------------------------PTRHLH-----------------------------------------------HS   57 (197)
Q Consensus        50 -------------------------p~~h~~-----------------------------------------------p~   57 (197)
                                               +.+||.                                               |.
T Consensus       126 ~~~~a~~l~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vigve~~  205 (308)
T 2egu_A          126 AIAKAEELVREHGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGGTITGAGKVLREAYPNIKIYAVEPA  205 (308)
T ss_dssp             HHHHHHHHHHHHCCBCC--------------CHHHHHHHHHTTCCCEEEEEGGGTHHHHHHHHHHHHHCTTCEEEEEEEC
T ss_pred             HHHHHHHHHHHCcCCcCCcCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEeeCCchhHHHHHHHHHHhCCCCEEEEEEeC
Confidence                                     112331                                               22


Q ss_pred             Ccceecccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCC
Q 043034           58 EYVVLSHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDR  125 (197)
Q Consensus        58 ~~~~~~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g  125 (197)
                      ++..+.+...+++.++|++            +|+++.|+|+|+++++|+|++++||++|||||++++|+++++++. .++
T Consensus       206 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~epssa~a~aa~~~~~~~~-~~~  284 (308)
T 2egu_A          206 DSPVLSGGKPGPHKIQGIGAGFVPDILDTSIYDGVITVTTEEAFAAARRAAREEGILGGISSGAAIHAALKVAKEL-GKG  284 (308)
T ss_dssp             C-----------------------CCCCCCSCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHH-CTT
T ss_pred             CCccccCCCCCCcccCccCCCCCCHhHHHHhcCeEEEECHHHHHHHHHHHHHHhCceEcHHHHHHHHHHHHHHHhc-CCC
Confidence            2222222233455666665            799999999999999999999999999999999999999998764 367


Q ss_pred             ceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCc
Q 043034          126 ILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFD  180 (197)
Q Consensus       126 ~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~  180 (197)
                      ++||+                                  ++||+|+||+++.+|+
T Consensus       285 ~~vv~----------------------------------i~tg~g~ky~~~~~~~  305 (308)
T 2egu_A          285 KKVLA----------------------------------IIPSNGERYLSTPLYQ  305 (308)
T ss_dssp             CEEEE----------------------------------EECBBGGGGTTSSTTC
T ss_pred             CeEEE----------------------------------EECCCCcccccchhcc
Confidence            89999                                  9999999999998885

>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*

Probab=99.91  E-value=1.7e-24  Score=186.68  Aligned_cols=140  Identities=40%  Similarity=0.574  Sum_probs=114.8

Q ss_pred             CHHHHHHcCCCCCCC--EEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-----------------------------
Q 043034            1 MIKDAEDKGLITPGK--SILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-----------------------------   49 (197)
Q Consensus         1 mi~~ae~~G~i~pG~--t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-----------------------------   49 (197)
                      ||.+|+++|.++||+  + |||+||||+|+++|++|+     .+|++++++                             
T Consensus        47 ~l~~a~~~g~~~~g~~~~-vv~assGN~g~a~A~~a~-----~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~~~~  120 (304)
T 1ve1_A           47 MIKDAEERGILRPGSGQV-IVEPTSGNTGIGLAMIAA-----SRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRM  120 (304)
T ss_dssp             HHHHHHHTTSCCTTSCCE-EEESCCSHHHHHHHHHHH-----HHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTTTHH
T ss_pred             HHHHHHHcCCCCCCCccE-EEEeCCcHHHHHHHHHHH-----HcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCH
Confidence            578899999999998  8 999999999999999999     999999998                             


Q ss_pred             ---------------------------eccccc-----------------------------------------------
Q 043034           50 ---------------------------PTRHLH-----------------------------------------------   55 (197)
Q Consensus        50 ---------------------------p~~h~~-----------------------------------------------   55 (197)
                                                 +..||.                                               
T Consensus       121 ~~~~~~a~~l~~~~~~~~~~~~~n~~~~~g~~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vi~ve  200 (304)
T 1ve1_A          121 LAAREEALRLKEELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVE  200 (304)
T ss_dssp             HHHHHHHHHHHHHHTCBCCCTTTCHHHHHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHTTCTTCEEEEEE
T ss_pred             HHHHHHHHHHHhcCCCEeCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEecCCchhHHHHHHHHHHhCCCCEEEEEe
Confidence                                       011210                                               


Q ss_pred             CCCcceecccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCC
Q 043034           56 HSEYVVLSHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEN  123 (197)
Q Consensus        56 p~~~~~~~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~  123 (197)
                      |.++..+.++.++++.++|++            +|+++.|+|+|+++++++|++++|+++|||||++++|+++++++.. 
T Consensus       201 ~~~~~~~~~g~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epssa~a~aa~~~~~~~~~-  279 (304)
T 1ve1_A          201 PARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVARELG-  279 (304)
T ss_dssp             EGGGCTTTTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHHC-
T ss_pred             cCCCccccCCCCCCcccCCCCCCCCChhhhhhhCCEEEEECHHHHHHHHHHHHHHhCcEEcHHHHHHHHHHHHHHHhcC-
Confidence            122222222233456677765            8999999999999999999999999999999999999999987653 


Q ss_pred             CCceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCch
Q 043034          124 DRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDS  181 (197)
Q Consensus       124 ~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~  181 (197)
                      ++++||+                                  +++|+|+||+++.+|++
T Consensus       280 ~~~~vv~----------------------------------i~tg~g~ky~~~~~~~~  303 (304)
T 1ve1_A          280 PGKRVAC----------------------------------ISPDGGWKYLSTPLYAE  303 (304)
T ss_dssp             TTCEEEE----------------------------------EECBBSGGGTTSTTTC-
T ss_pred             CCCeEEE----------------------------------EECCCCccCCCcccCCC
Confidence            6789999                                  99999999999977763

>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*

Probab=99.91  E-value=2.2e-24  Score=186.57  Aligned_cols=144  Identities=34%  Similarity=0.479  Sum_probs=110.5

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-----------------------ec------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-----------------------PT------   51 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-----------------------p~------   51 (197)
                      ||.+|+++|.++||++ |||+||||+|+|+|++|+     .+|++++++                       +.      
T Consensus        48 ~i~~a~~~g~~~~g~~-vv~~ssGN~g~a~A~~a~-----~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~  121 (303)
T 2v03_A           48 MIVEAEKRGEIKPGDV-LIEATSGNTGIALAMIAA-----LKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEG  121 (303)
T ss_dssp             HHHHHHHTTCCCTTCE-EEEECSSHHHHHHHHHHH-----HHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTTTHHHH
T ss_pred             HHHHHHHcCCCCCCCE-EEEECCcHHHHHHHHHHH-----HcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCHHH
Confidence            5788999999999998 999999999999999999     999999998                       10      


Q ss_pred             ----------c--c-cc------------------------CC--Ccceec------------------------cccc-
Q 043034           52 ----------R--H-LH------------------------HS--EYVVLS------------------------HVVM-   67 (197)
Q Consensus        52 ----------~--h-~~------------------------p~--~~~~~~------------------------~~~~-   67 (197)
                                .  . |-                        +.  ...+..                        ++++ 
T Consensus       122 ~~~~a~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigve~~  201 (303)
T 2v03_A          122 ARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPE  201 (303)
T ss_dssp             HHHHHHHHHHTTSCEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEEEC
T ss_pred             HHHHHHHHHHhCCCcccCCcCChhhHHHhcCCcHHHHHHHhCCCCCEEEEEeCccHhHHHHHHHHHHhCCCCEEEEEcCC
Confidence                      0  0 10                        00  000000                        0000 


Q ss_pred             cc---ccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEee
Q 043034           68 GK---HLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSL  132 (197)
Q Consensus        68 ~~---~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~  132 (197)
                      +.   +.++|++            +|+++.|+|+|+++++++|++++|+++|||||++++|+++++++.  ++++||+  
T Consensus       202 ~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~~~~~~--~~~~vv~--  277 (303)
T 2v03_A          202 EGSSIPGIRRWPTEYLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAAAN--PDAVVVA--  277 (303)
T ss_dssp             TTCCCTTCCCCCGGGCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHS--TTCEEEE--
T ss_pred             CCcccccCCcCCCCCCCcccchHHCCEEEEECHHHHHHHHHHHHHHcCceEcHHHHHHHHHHHHHHHHC--CCCeEEE--
Confidence            00   1134443            799999999999999999999999999999999999999998875  5789999  


Q ss_pred             cccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCchhHHHH
Q 043034          133 ISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEA  186 (197)
Q Consensus       133 ~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~~~~~~  186 (197)
                                                      +++|+|.||+++.+|++|+.+.
T Consensus       278 --------------------------------i~tg~~~ky~~~~~~~~~~~~~  299 (303)
T 2v03_A          278 --------------------------------IICDRGDRYLSTGVFGEEHFSQ  299 (303)
T ss_dssp             --------------------------------EECBBSGGGGGGTTTCC-----
T ss_pred             --------------------------------EECCCCcccccchhcHHHHHhc
Confidence                                            9999999999999999998763

>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*

Probab=99.86  E-value=8.9e-22  Score=170.24  Aligned_cols=133  Identities=44%  Similarity=0.536  Sum_probs=107.2

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-------------------------------   49 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-------------------------------   49 (197)
                      ||.+|+++|.+++|   |||+||||+|+|+|++|+     .+|++++++                               
T Consensus        54 ~l~~a~~~g~~~~~---vv~aSsGN~g~a~A~aa~-----~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~  125 (303)
T 1o58_A           54 MILDAEKRGLLKNG---IVEPTSGNMGIAIAMIGA-----KRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKG  125 (303)
T ss_dssp             HHHHHHHTTCCTTC---EEEECSSHHHHHHHHHHH-----HHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHH
T ss_pred             HHHHHHHcCCCCCC---EEEECchHHHHHHHHHHH-----HcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCHHH
Confidence            57889999998877   689999999999999999     999999998                               


Q ss_pred             -------------------------eccccc--------------------------------------CC---------
Q 043034           50 -------------------------PTRHLH--------------------------------------HS---------   57 (197)
Q Consensus        50 -------------------------p~~h~~--------------------------------------p~---------   57 (197)
                                               |.+||.                                      |.         
T Consensus       126 ~~~~a~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~~vigve~  205 (303)
T 1o58_A          126 AVEKALEISRETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEP  205 (303)
T ss_dssp             HHHHHHHHHHHHCCBCCCTTTCHHHHHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHHHHGGGSEEEEEEE
T ss_pred             HHHHHHHHHHhcCeEeCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCEEEEeeCCcccHHHHHHHHHHhCCCCCEEEEEec
Confidence                                     011211                                      11         


Q ss_pred             -Ccceecccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCC
Q 043034           58 -EYVVLSHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEND  124 (197)
Q Consensus        58 -~~~~~~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~  124 (197)
                       ++..+.++..+++.++|++            +|+++.|+|+|+++++++|++++|+++|||||++++|+++++++.. +
T Consensus       206 ~~~~~~~~g~~~~~~~~gi~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~~~-~  284 (303)
T 1o58_A          206 AKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLG-P  284 (303)
T ss_dssp             TTSCTTTTCCCCCCCCTTSCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHTSC-T
T ss_pred             CCCccccCCCCCCeecCcCCCCCcCHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCceEcHHHHHHHHHHHHHHHHcC-C
Confidence             1111222223345667765            8999999999999999999999999999999999999999988753 6


Q ss_pred             CceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCc
Q 043034          125 RILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLST  176 (197)
Q Consensus       125 g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst  176 (197)
                      +++||+                                  +++|+|+||++|
T Consensus       285 ~~~vv~----------------------------------i~tg~g~ky~~~  302 (303)
T 1o58_A          285 DARVVT----------------------------------VAPDHAERYLSI  302 (303)
T ss_dssp             TCCEEE----------------------------------EECBBGGGCTTT
T ss_pred             CCEEEE----------------------------------EECCCCcccccC
Confidence            789999                                  999999999987

>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A

Probab=99.74  E-value=5e-18  Score=149.46  Aligned_cols=54  Identities=24%  Similarity=0.240  Sum_probs=48.1

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++++|++++|+++|||||++++|+++++++.. .++++||+
T Consensus       260 ~~~~~~V~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~~~~~~~~~vv~  314 (351)
T 3aey_A          260 GGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFKLLREGRLEPESTVVL  314 (351)
T ss_dssp             TCEEEEECHHHHHHHHHHHHHHTCCCBCHHHHHHHHHHHHHHHTTCSCTTCEEEE
T ss_pred             CCeEEEECHHHHHHHHHHHHHhCCEEECchHHHHHHHHHHHHHhcCCCCCCeEEE
Confidence            3589999999999999999999999999999999999999987532 36788888

>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}

Probab=99.74  E-value=6.6e-18  Score=148.71  Aligned_cols=54  Identities=20%  Similarity=0.164  Sum_probs=48.2

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt  130 (197)
                      .|+++.|+|+|+++++|+|++++|+++|||||++++|+++++++.. .++++||+
T Consensus       262 ~~~~~~V~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~~~~~~~~~vv~  316 (352)
T 2zsj_A          262 GGKIDAVSDSEILYAYKLIASTEGVFCEPASAASVAGLIKLVREGFFKGGEVVTC  316 (352)
T ss_dssp             TCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHTTCCCSCCEEEE
T ss_pred             CCeEEEECHHHHHHHHHHHHHhCCeeECchHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence            3589999999999999999999999999999999999999987532 36788999

>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*

Probab=99.73  E-value=5.3e-18  Score=149.92  Aligned_cols=54  Identities=17%  Similarity=0.127  Sum_probs=46.8

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcC-CCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKI-PENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~-~~~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++|+|++++|+++|||||++++|+++...+ ...++++||+
T Consensus       256 ~d~~~~V~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~~~~~~~~~Vv~  310 (346)
T 3l6b_A          256 VDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVKNICI  310 (346)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHSGGGGGSCTTCCEEEE
T ss_pred             CCeEEEECHHHHHHHHHHHHHHCCcEEcHHHHHHHHHHHHhhhhhccCCCCeEEE
Confidence            89999999999999999999999999999999999999865532 2235778877

>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}

Probab=99.73  E-value=1.2e-17  Score=148.01  Aligned_cols=54  Identities=22%  Similarity=0.190  Sum_probs=47.8

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++|+|++++|+++|||||++++|+++++++.. .++++||+
T Consensus       269 ~~~~~~V~d~e~~~a~~~l~~~eGi~~epssa~alaa~~~~~~~~~~~~~~~vv~  323 (360)
T 2d1f_A          269 KGRFLAASDEEILAAYHLVARVEGVFVEPASAASIAGLLKAIDDGWVARGSTVVC  323 (360)
T ss_dssp             TCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHTSSCTTCEEEE
T ss_pred             CCeEEEECHHHHHHHHHHHHHhcCeeECchHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence            3589999999999999999999999999999999999999987422 36778888

>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1

Probab=99.72  E-value=1.6e-17  Score=150.32  Aligned_cols=54  Identities=31%  Similarity=0.283  Sum_probs=47.3

Q ss_pred             ce-eEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HE-YCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 ID-eiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +| +++.|+|+|+++++++|+++|||++|||||++++++++++++...+.+.+|+
T Consensus       311 ~dg~~~~Vsd~ea~~a~~~l~~~eGi~~~pssa~alaa~~~l~~~g~~~~~~vVv  365 (389)
T 1wkv_A          311 ISYTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVV  365 (389)
T ss_dssp             CCCEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHTTCSCSEEEEE
T ss_pred             eccEEEEECHHHHHHHHHHHHHHcCCeEChHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence            67 9999999999999999999999999999999999999999873222345777

>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*

Probab=99.67  E-value=3.3e-16  Score=140.02  Aligned_cols=74  Identities=19%  Similarity=0.211  Sum_probs=61.0

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHH-----hcCC--CCCCceEEEeecccccccceecccccCC
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKV-----AKIP--ENDRILIVVSLISYKLYFSFCINSLVNQ  149 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlkl-----A~~~--~~~g~~VVt~~~~~d~~~s~~~~~~~~~  149 (197)
                      .|+++.|+|+|+++++++|++++||++|||||++++|+++.     .++.  ..++++||+                   
T Consensus       276 ~~~~~~Vsd~e~~~a~~~l~~~eGi~~epssa~alaa~~~~~~~~l~~~g~~~~~~~~Vv~-------------------  336 (372)
T 1p5j_A          276 PIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLVV-------------------  336 (372)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTTHHHHHHHTTSSCSSCSCEEE-------------------
T ss_pred             CCEEEEECHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHhhHHHHhhccccCCCCCeEEE-------------------
Confidence            57799999999999999999999999999999999998852     2222  135789999                   


Q ss_pred             CCCCccccccccceeeeccCCccccCcccCchhHHHH
Q 043034          150 SPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEA  186 (197)
Q Consensus       150 ~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~~~~~~  186 (197)
                                     ++||++  |++...+++|+++.
T Consensus       337 ---------------i~tgg~--~~~~~~~~~~~~~~  356 (372)
T 1p5j_A          337 ---------------IVCGGS--NISLAQLRALKEQL  356 (372)
T ss_dssp             ---------------ECCBCS--SCCHHHHHHHHHHH
T ss_pred             ---------------EECCCC--CCCHHHHHHHHHHh
Confidence                           999875  78877788877665

>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B*

Probab=99.65  E-value=3.1e-16  Score=139.01  Aligned_cols=65  Identities=28%  Similarity=0.405  Sum_probs=60.2

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccceecccccCCCCCCccc
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCS  156 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~  156 (197)
                      +|+++.|+|+|+++++|+|+++|||++|++||+++++|.++++++ .++++||+                          
T Consensus       316 ~~~~~~V~d~e~~~a~~~l~~~egi~~~~~sa~a~a~a~~l~~~~-~~~~~vv~--------------------------  368 (388)
T 1v8z_A          316 RAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEM-SRDEIIIV--------------------------  368 (388)
T ss_dssp             SEEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHTS-CTTCEEEE--------------------------
T ss_pred             CcEEEEECHHHHHHHHHHHHHhcCCeecccHHHHHHHHHHHHHhc-CCCCEEEE--------------------------
Confidence            589999999999999999999999999999999999999999875 36889999                          


Q ss_pred             cccccceeeeccCCccccCc
Q 043034          157 LHEACHQFLLPSGGERYLST  176 (197)
Q Consensus       157 ~~~~~~~~i~~d~g~rYlst  176 (197)
                              ++||+|.||+++
T Consensus       369 --------i~tg~g~k~~~~  380 (388)
T 1v8z_A          369 --------NLSGRGDKDLDI  380 (388)
T ss_dssp             --------EECBBSGGGHHH
T ss_pred             --------EECCCCccCHHH
Confidence                    999999999887

>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}

Probab=99.64  E-value=1e-15  Score=132.56  Aligned_cols=54  Identities=28%  Similarity=0.194  Sum_probs=45.4

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHH-----HhcCC--CCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIK-----VAKIP--ENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlk-----lA~~~--~~~g~~VVt  130 (197)
                      .|+++.|+|+|+++++++|++++|+++|||||++++|+++     +.++.  ..++++||+
T Consensus       236 ~~~~~~v~d~e~~~a~~~l~~~~gi~~eps~a~a~aa~~~~~~~~~~~~g~~~~~~~~vv~  296 (318)
T 2rkb_A          236 KIHSEVVEDTEAVSAVQQLLDDERMLVEPACGAALAAIYSGLLRRLQAEGCLPPSLTSVVV  296 (318)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHTSHHHHHHHTTSSCSSCSCEEE
T ss_pred             CCEEEEECHHHHHHHHHHHHHhcCcEEchhHHHHHHHHHHhhHHHHhhccccCCCCCeEEE
Confidence            5778999999999999999999999999999999999874     22222  135789999

>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A*

Probab=99.63  E-value=2.3e-16  Score=137.23  Aligned_cols=52  Identities=19%  Similarity=0.119  Sum_probs=48.8

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++|+|++++||++|||||++++|++++++++  ++++||+
T Consensus       254 ~~~~~~v~d~e~~~a~~~l~~~~gi~~eps~a~alaa~~~~~~~~--~~~~vv~  305 (323)
T 1v71_A          254 VDDILTVSDEELIDCLKFYAARMKIVVEPTGCLSFAAARAMKEKL--KNKRIGI  305 (323)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHHTCCCCCGGGGHHHHHHHHTGGGG--TTCEEEE
T ss_pred             CCEEEEECHHHHHHHHHHHHHhcCeEEcHHHHHHHHHHHHhHHhc--CCCeEEE
Confidence            799999999999999999999999999999999999999988765  5789999

>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1

Probab=99.61  E-value=2.7e-15  Score=129.35  Aligned_cols=51  Identities=16%  Similarity=0.109  Sum_probs=48.1

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++++|++++||++|||||++++|+++++++  . +++||+
T Consensus       250 ~~~~~~v~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~--~-~~~vv~  300 (311)
T 1ve5_A          250 VDGILTVSEEALLEAERLLFTRTKQVVEPTGALPLAAVLEHGAR--L-PQTLAL  300 (311)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHHTCBCCCGGGGHHHHHHHHHGGG--S-CSEEEE
T ss_pred             CCEEEEECHHHHHHHHHHHHHhcCceEchHHHHHHHHHHhhhhc--c-CCEEEE
Confidence            79999999999999999999999999999999999999999877  3 788999

>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A

Probab=99.61  E-value=1.1e-15  Score=139.87  Aligned_cols=43  Identities=21%  Similarity=0.235  Sum_probs=41.7

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhc
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAK  119 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~  119 (197)
                      +|+++.|+|+|+++++++|+++|||++|||||+++++++++++
T Consensus       357 ~d~~~~Vsd~e~~~a~~~L~~~eGi~~epssaaalAa~~~l~~  399 (442)
T 3ss7_X          357 LDGFYTLSDQTMYDMLGWLAQEEGIRLEPSALAGMAGPQRVCA  399 (442)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHHHCCCCCGGGGGGGGHHHHHHH
T ss_pred             CCeEEEECHHHHHHHHHHHHHHCCCeEcHHHHHHHHHHHHHHh
Confidence            7999999999999999999999999999999999999999986

>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...

Probab=99.58  E-value=4.3e-15  Score=132.86  Aligned_cols=54  Identities=24%  Similarity=0.410  Sum_probs=49.2

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++++|+++|||++|++||+++++|.++++++..++++||+
T Consensus       320 ~~~~~~V~d~e~~~a~~~l~~~egi~~~~~sa~a~a~a~~l~~~~~~~~~~vv~  373 (396)
T 1qop_B          320 RADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVV  373 (396)
T ss_dssp             SSEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHHSTTSCEEEEE
T ss_pred             CeEEEEECHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCCCCeEEE
Confidence            689999999999999999999999999999999999999998775325788998

>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*

Probab=99.55  E-value=7.1e-15  Score=136.10  Aligned_cols=71  Identities=15%  Similarity=0.065  Sum_probs=56.8

Q ss_pred             cee----EEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEEe-ecccccccceecccccC
Q 043034           77 HEY----CFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVVS-LISYKLYFSFCINSLVN  148 (197)
Q Consensus        77 IDe----iv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt~-~~~~d~~~s~~~~~~~~  148 (197)
                      +|+    ++.|+|+|+++++| +++++|++++||||++++|+++++++.. .++++||++ ++++.||.+++...+-.
T Consensus       372 ~~~~~g~~~~Vsd~e~~~ai~-l~~~eGi~~ePssA~alaa~~~~~~~g~~~~~~~vV~i~Tg~~~k~~~~v~~~~~~  448 (486)
T 1e5x_A          372 LKKCNGIVEEATEEELMDAMA-QADSTGMFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSKIDYHSN  448 (486)
T ss_dssp             HHHTTCEEEEECHHHHHHHHH-HHHHTTCCCCHHHHHHHHHHHHHHHTTSSCTTCCEEEEECBCGGGGHHHHHHHHTT
T ss_pred             HhccCCeEEEECHHHHHHHHH-HHHHCCeEEChhHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCccCHHHHHHHhcC
Confidence            566    99999999999999 7888999999999999999999987642 245666663 77777777766665533

>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*

Probab=99.55  E-value=1.2e-14  Score=126.41  Aligned_cols=52  Identities=13%  Similarity=0.180  Sum_probs=47.2

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeeh-hHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGIS-SDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~S-SGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|+ +.|+|+|+++++++|++++||++||+ ||++++++++++++... +++||+
T Consensus       253 ~~~-~~v~d~e~~~a~~~l~~~~gi~~ep~ssa~a~aa~~~~~~~~~~-~~~Vv~  305 (325)
T 1j0a_A          253 FGE-YGKITGEVAQIIRKVGTREGIILDPVYTGKAFYGLVDLARKGEL-GEKILF  305 (325)
T ss_dssp             TTS-TTCCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCS-CSEEEE
T ss_pred             ccC-CCCCCHHHHHHHHHHHHhhCcccccchHHHHHHHHHHHHHcCCC-CCcEEE
Confidence            788 99999999999999999999999995 99999999999987543 778888

>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A

Probab=99.54  E-value=1.5e-14  Score=131.62  Aligned_cols=53  Identities=25%  Similarity=0.288  Sum_probs=48.5

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++++|+++|||+++++||+++++++++++++. ++++||+
T Consensus       347 ~~~~~~Vsd~e~~~a~~~l~~~eGi~~~~esa~A~a~a~~l~~~~~-~~~~vvv  399 (422)
T 2o2e_A          347 RVDYRPITDSEAMDAFGLLCRMEGIIPAIESAHAVAGALKLGVELG-RGAVIVV  399 (422)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-TTCEEEE
T ss_pred             CeeEEEECHHHHHHHHHHHHHHcCCccCchHHHHHHHHHHHHHhcC-CCCEEEE
Confidence            5889999999999999999999999999999999999999987653 6788888

>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum}

Probab=99.53  E-value=1.1e-14  Score=129.39  Aligned_cols=54  Identities=11%  Similarity=0.045  Sum_probs=49.7

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++|+|++++|+++|||||++++|+++++++...++++||+
T Consensus       288 ~~~~~~v~d~e~~~a~~~l~~~~gi~~ep~sa~alaa~~~~~~~~~~~g~~Vv~  341 (366)
T 3iau_A          288 IDGMVLVANDGISAAIKDVYDEGRNILETSGAVAIAGAAAYCEFYKIKNENIVA  341 (366)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHTTCCSCEEEE
T ss_pred             CCCceeECHHHHHHHHHHHHHHcCcEEcHHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence            799999999999999999999999999999999999999998765435789999

>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*

Probab=99.52  E-value=3.4e-14  Score=127.48  Aligned_cols=54  Identities=15%  Similarity=0.144  Sum_probs=47.5

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhC----CeeeehhHHHHHHHHHHh---------cCCC-CCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEG----LLVGISSDAAAAASIKVA---------KIPE-NDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EG----I~VG~SSGAaLAAAlklA---------~~~~-~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++|+|+++||    |++|||||++++|+++++         ++.. .++++||+
T Consensus       306 ~d~~~~V~d~e~~~a~~~l~~~eG~~~~i~~epssa~alaa~~~~~~~~~~~~l~~~~~~~~~~~Vv~  373 (398)
T 4d9i_A          306 ATQFISCQDSVAALGMRVLGNPYGNDPRIISGESGAVGLGVLAAVHYHPQRQSLMEKLALNKDAVVLV  373 (398)
T ss_dssp             CCEEEEECTHHHHHHHHHHHSCSTTCCCCCCCHHHHHHHHHHHHHHHSTTHHHHHHHTTCCTTCEEEE
T ss_pred             CCeEEEECHHHHHHHHHHHHHhhCCCCcEEECchHHHHHHHHHHhhhhhhhHHHHHhcCCCCCCEEEE
Confidence            799999999999999999999999    999999999999999884         3322 36788888

>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus}

Probab=99.52  E-value=3.1e-14  Score=128.80  Aligned_cols=53  Identities=28%  Similarity=0.313  Sum_probs=48.8

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++++|+++|||+++++||+++++++++++++. ++++||+
T Consensus       345 ~~~~~~Vsd~e~~~a~~~l~~~egi~~~~~sa~a~a~a~~~~~~~~-~~~~Vv~  397 (418)
T 1x1q_A          345 VAEYASVTDEEALEGFKLLARLEGIIPALESAHAIAYAAKVVPEMD-KDQVVVI  397 (418)
T ss_dssp             SEEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHTTTSC-TTCEEEE
T ss_pred             CeEEEEECHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHhcC-CCCeEEE
Confidence            5889999999999999999999999999999999999999987753 6788888

>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*

Probab=99.51  E-value=8.6e-14  Score=123.88  Aligned_cols=54  Identities=24%  Similarity=0.234  Sum_probs=43.7

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHH-----HHhcCCC--CCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASI-----KVAKIPE--NDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAl-----klA~~~~--~~g~~VVt  130 (197)
                      .+..+.|+|+|+++++|+|+++|||++|||||++++|++     ++.++..  .++++||+
T Consensus       276 ~~~~~~V~d~e~~~a~~~l~~~egi~~eps~aaalaa~~~~k~~~l~~~g~~~~~~~~Vv~  336 (364)
T 4h27_A          276 PIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLVV  336 (364)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHTTSSCSSCCEEEE
T ss_pred             CCEEEEECHHHHHHHHHHHHHHCCCeEcccHHHHHHHHHhhhhHHhhhccCcCCCCCeEEE
Confidence            356678999999999999999999999999999999985     4444432  12567777

>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A*

Probab=99.50  E-value=1.3e-14  Score=127.62  Aligned_cols=54  Identities=24%  Similarity=0.257  Sum_probs=48.3

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeeh-hHHHHHHHHHHhcCCC-CCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGIS-SDAAAAASIKVAKIPE-NDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~S-SGAaLAAAlklA~~~~-~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++|+|++++||++||| ||++++|+++++++.. .++++||+
T Consensus       271 ~d~~~~V~d~e~~~a~~~l~~~~gi~~epsYsa~a~aa~~~~~~~~~~~~~~~Vv~  326 (342)
T 4d9b_A          271 FAPGYGVPNDAGMEAVKLLASLEGVLLDPVYTGKAMAGLIDGISQKRFNDDGPILF  326 (342)
T ss_dssp             STTCTTCCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHHTCSSSSSCEEE
T ss_pred             CCceEecCCHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHcCCCCCCCeEEE
Confidence            788999999999999999999999999999 9999999999987532 36778888

>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*

Probab=99.48  E-value=1.2e-13  Score=120.91  Aligned_cols=54  Identities=20%  Similarity=0.252  Sum_probs=47.2

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeeh-hHHHHHHHHHHhcCCC-CCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGIS-SDAAAAASIKVAKIPE-NDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~S-SGAaLAAAlklA~~~~-~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++|+|+++|||++||+ ||++++++++++++.. .++++||+
T Consensus       265 ~~~~~~v~d~e~~~a~~~l~~~egi~~ep~~sa~alaa~~~~~~~~~~~~~~~Vv~  320 (341)
T 1f2d_A          265 AYPCYGVPNEGTIEAIRTCAEQEGVLTDPVYEGKSMQGLIALIKEDYFKPGANVLY  320 (341)
T ss_dssp             STTBTTBCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCSCTTCEEEE
T ss_pred             ccceEecCCHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence            566788999999999999999999999995 9999999999998742 36778887

>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*

Probab=99.47  E-value=2.4e-13  Score=118.16  Aligned_cols=54  Identities=15%  Similarity=0.200  Sum_probs=47.3

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeeh-hHHHHHHHHHHhcCCC-CCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGIS-SDAAAAASIKVAKIPE-NDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~S-SGAaLAAAlklA~~~~-~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++++|++++||++||+ ||++++++++++++.. .++++||+
T Consensus       264 ~~~~~~v~d~e~~~a~~~l~~~~gi~~ep~ysa~alaa~~~~~~~~~~~~~~~Vv~  319 (338)
T 1tzj_A          264 AGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLY  319 (338)
T ss_dssp             SCSBTTBCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCSCTTCEEEE
T ss_pred             ccceeecCCHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCCCCCCeEEE
Confidence            556789999999999999999999999996 9999999999988643 36778888

>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2

Probab=99.44  E-value=1.6e-13  Score=128.91  Aligned_cols=54  Identities=13%  Similarity=0.010  Sum_probs=49.0

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|+++.|+|+|+.+++++|++++|+++|||||++++|+++++++...++++||+
T Consensus       259 vd~~v~Vsd~ei~~ai~~L~~~~givvEPsgA~alAal~~~~~~~~~~g~~VV~  312 (514)
T 1tdj_A          259 LDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNIRGERLAH  312 (514)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             CCeEEEECHHHHHHHHHHHHHHcCeEEcHHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence            799999999999999999999999999999999999999988653235789999

>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1

Probab=99.42  E-value=4.2e-13  Score=122.08  Aligned_cols=64  Identities=13%  Similarity=-0.059  Sum_probs=52.7

Q ss_pred             eeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE-eecccccccceecccc
Q 043034           78 EYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV-SLISYKLYFSFCINSL  146 (197)
Q Consensus        78 Deiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt-~~~~~d~~~s~~~~~~  146 (197)
                      ++++.|+|+|+++++|+| +++|++++||||+++++++++++    ++++||+ ++++++||.+++...+
T Consensus       326 ~~~~~Vsd~e~~~a~~~l-~~eGi~~~p~sa~a~aa~~~~~~----~~~~vV~i~tg~~~K~~~~v~~~~  390 (428)
T 1vb3_A          326 LGYAAVDDETTQQTMREL-KELGYTSEPHAAVAYRALRDQLN----PGEYGLFLGTAHPAKFKESVEAIL  390 (428)
T ss_dssp             SEEEECCHHHHHHHHHHH-HHTTCCCCHHHHHHHHHHHTTCC----TTCEEEEEECBCGGGGHHHHHHHH
T ss_pred             cEEEEECHHHHHHHHHHH-HHCCeEECchHHHHHHHHHHHhC----CCCcEEEEeCCCCCCCHHHHHHHh
Confidence            579999999999999999 99999999999999999998765    3455655 3777777777665544

>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1

Probab=99.38  E-value=3.9e-13  Score=125.94  Aligned_cols=65  Identities=14%  Similarity=0.116  Sum_probs=50.7

Q ss_pred             eEEEcCcHHHHHHHHHHHHHh----CCeeeehhHHHHHHHHHHhcCCCCCCceEEE-eecccccccceec
Q 043034           79 YCFQVSSEEAIETAQQLAHKE----GLLVGISSDAAAAASIKVAKIPENDRILIVV-SLISYKLYFSFCI  143 (197)
Q Consensus        79 eiv~VsDeEAi~aaR~LAr~E----GI~VG~SSGAaLAAAlklA~~~~~~g~~VVt-~~~~~d~~~s~~~  143 (197)
                      +++.|+|+|+++++|+|++++    |++++|+||++++|+++++++...++++||+ +++.+.||-..+.
T Consensus       391 ~~~~Vsd~e~~~ai~~l~~~~~~~~G~~~ep~tAv~~aa~~~~~~~g~~~~~~vV~l~Ta~~~Kf~~~v~  460 (514)
T 1kl7_A          391 TSERVSNEETSETIKKIYESSVNPKHYILDPHTAVGVCATERLIAKDNDKSIQYISLSTAHPAKFADAVN  460 (514)
T ss_dssp             EEEECCHHHHHHHHHHHHHHCCSSTTCCCCHHHHHHHHHHHHHHHHHCCTTSEEEEEECBCGGGGHHHHH
T ss_pred             eEEEECHHHHHHHHHHHHHhCCCCCCEEEcccHHHHHHHHHHHHHhccCCCCcEEEEECCchhhhHHHHH
Confidence            489999999999999999999    9999999999999999998652124556666 2555555544333

>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV}

Probab=98.72  E-value=7.1e-08  Score=89.54  Aligned_cols=63  Identities=13%  Similarity=0.100  Sum_probs=50.1

Q ss_pred             EEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEE-Eeecccccccceecccc
Q 043034           80 CFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIV-VSLISYKLYFSFCINSL  146 (197)
Q Consensus        80 iv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VV-t~~~~~d~~~s~~~~~~  146 (197)
                      .+.|||+|+.++++++++++|++++|+||++++|++++.+    ++..+| +.|+.+-||-..+...+
T Consensus       365 ~~~VsD~ei~~ai~~l~~~~g~~vEP~~Ava~aa~~~~~~----~~~~~V~l~Ta~~~Kf~~~v~~a~  428 (468)
T 4f4f_A          365 AGRSTVDETAATIESVLSKDGYLLDPHSAIGVKVAREKAS----GTAPMVVLATAHPAKFPDAVKAAC  428 (468)
T ss_dssp             EEECCHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHCC----SSSCEEEEECBCGGGSHHHHHHHH
T ss_pred             EEEECHHHHHHHHHHHHHHCCEEECHhHHHHHHHHHHHhC----CCCeEEEEecCCccccHHHHHHHh
Confidence            6899999999999999999999999999999999998742    344444 44777777666555444

>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis}

Probab=97.21  E-value=0.00024  Score=66.42  Aligned_cols=64  Identities=6%  Similarity=0.022  Sum_probs=52.4

Q ss_pred             EEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccceecccc
Q 043034           80 CFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSL  146 (197)
Q Consensus        80 iv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s~~~~~~  146 (197)
                      .+.|+|+|+.+++|++++++|++++|+||++++++.++.+.   ....|++.|+.+=||-..+...+
T Consensus       384 ~~~VsDee~~~air~l~~~~G~l~dPhtAva~aaa~~~~~~---~~~~V~l~Ta~p~Kf~~~v~~a~  447 (487)
T 3v7n_A          384 SGRSTHADRIATIRDVFERYRTMIDTHTADGLKVAREHLRP---GVPMVVLETAQPIKFGESIREAL  447 (487)
T ss_dssp             EECCCHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTSCCT---TSCEEEEECBCGGGGHHHHHHHH
T ss_pred             EEEECHHHHHHHHHHHHHHcCEEEChhHHHHHHHHHHhhCC---CCcEEEEecCCccccHHHHHHHh
Confidence            46899999999999999999999999999999999887532   23355555888888887666655

>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis}

Probab=95.95  E-value=0.0048  Score=57.64  Aligned_cols=42  Identities=17%  Similarity=0.287  Sum_probs=29.5

Q ss_pred             HHHHH-HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-ec
Q 043034            2 IKDAE-DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-PT   51 (197)
Q Consensus         2 i~~ae-~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-p~   51 (197)
                      ++.+. ++|.   +.+ ||++||||||++.|..++    +.+|++++++ |.
T Consensus       141 l~~a~~~~g~---~~~-Vv~ASSGNtG~Aaa~a~~----~~~Gi~~~I~~P~  184 (487)
T 3v7n_A          141 FEYTLAKHGE---TLN-ILGATSGDTGSAAEYAMR----GKEGVRVFMLSPH  184 (487)
T ss_dssp             HHHHHHTTTC---CEE-EEEECSSHHHHHHHHHHT----TCTTEEEEEEEET
T ss_pred             HHHHHHhcCC---CcE-EEEeCChHHHHHHHHHHH----hccCCeEEEEECC
Confidence            56664 4553   445 999999999999544432    2699999987 53

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=90.85  E-value=0.95  Score=38.87  Aligned_cols=102  Identities=12%  Similarity=0.230  Sum_probs=64.9

Q ss_pred             HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcCcH
Q 043034            7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSE   86 (197)
Q Consensus         7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~VsDe   86 (197)
                      +.+.++||++++|=..||..|..++.+++     .+|++++.+-..   +...          ...+.+|.|.++..+++
T Consensus       164 ~~~~~~~g~~vlV~GasggiG~~~~~~a~-----~~Ga~Vi~~~~~---~~~~----------~~~~~~ga~~~~d~~~~  225 (351)
T 1yb5_A          164 HSACVKAGESVLVHGASGGVGLAACQIAR-----AYGLKILGTAGT---EEGQ----------KIVLQNGAHEVFNHREV  225 (351)
T ss_dssp             TTSCCCTTCEEEEETCSSHHHHHHHHHHH-----HTTCEEEEEESS---HHHH----------HHHHHTTCSEEEETTST
T ss_pred             HhhCCCCcCEEEEECCCChHHHHHHHHHH-----HCCCEEEEEeCC---hhHH----------HHHHHcCCCEEEeCCCc
Confidence            46889999997776666777777777777     999988766211   1000          12234566777888887


Q ss_pred             HHHHHHHHHHHHhC--CeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           87 EAIETAQQLAHKEG--LLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        87 EAi~aaR~LAr~EG--I~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +..+..+++....|  +++..+++..+..+++..+.    +.++|.
T Consensus       226 ~~~~~~~~~~~~~~~D~vi~~~G~~~~~~~~~~l~~----~G~iv~  267 (351)
T 1yb5_A          226 NYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSH----GGRVIV  267 (351)
T ss_dssp             THHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHEEE----EEEEEE
T ss_pred             hHHHHHHHHcCCCCcEEEEECCChHHHHHHHHhccC----CCEEEE
Confidence            77666666553223  35666666667677776653    345665

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=90.15  E-value=0.75  Score=39.01  Aligned_cols=103  Identities=11%  Similarity=0.097  Sum_probs=63.6

Q ss_pred             HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcCc
Q 043034            6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSS   85 (197)
Q Consensus         6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~VsD   85 (197)
                      .+++.++||++++|=..+|..|...+.+++     .+|.+++.+-.   .+..-          .....+|.|.++..++
T Consensus       137 ~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~-----~~Ga~Vi~~~~---~~~~~----------~~~~~lga~~~~~~~~  198 (340)
T 3gms_A          137 TETLNLQRNDVLLVNACGSAIGHLFAQLSQ-----ILNFRLIAVTR---NNKHT----------EELLRLGAAYVIDTST  198 (340)
T ss_dssp             HTTSCCCTTCEEEESSTTSHHHHHHHHHHH-----HHTCEEEEEES---SSTTH----------HHHHHHTCSEEEETTT
T ss_pred             HHhcccCCCCEEEEeCCccHHHHHHHHHHH-----HcCCEEEEEeC---CHHHH----------HHHHhCCCcEEEeCCc
Confidence            467899999997775555566666666666     89998877621   11111          1233467788888888


Q ss_pred             HHHHHHHHHHHHHhC--CeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           86 EEAIETAQQLAHKEG--LLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        86 eEAi~aaR~LAr~EG--I~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      ++..+..+++....|  +.+..+++.....+++..+    ++.++|.
T Consensus       199 ~~~~~~~~~~~~~~g~Dvvid~~g~~~~~~~~~~l~----~~G~iv~  241 (340)
T 3gms_A          199 APLYETVMELTNGIGADAAIDSIGGPDGNELAFSLR----PNGHFLT  241 (340)
T ss_dssp             SCHHHHHHHHTTTSCEEEEEESSCHHHHHHHHHTEE----EEEEEEE
T ss_pred             ccHHHHHHHHhCCCCCcEEEECCCChhHHHHHHHhc----CCCEEEE
Confidence            777777777654334  3555566555555544443    3456666

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=89.42  E-value=0.73  Score=38.89  Aligned_cols=102  Identities=13%  Similarity=0.202  Sum_probs=65.3

Q ss_pred             HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcCcH
Q 043034            7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSE   86 (197)
Q Consensus         7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~VsDe   86 (197)
                      +.+.++||++++|=..+|..|...+.+++     .+|.+++.+-..   +..          ....+.+|.|.++..+++
T Consensus       142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~-----~~Ga~Vi~~~~~---~~~----------~~~~~~~ga~~~~~~~~~  203 (334)
T 3qwb_A          142 EAYHVKKGDYVLLFAAAGGVGLILNQLLK-----MKGAHTIAVAST---DEK----------LKIAKEYGAEYLINASKE  203 (334)
T ss_dssp             TTSCCCTTCEEEESSTTBHHHHHHHHHHH-----HTTCEEEEEESS---HHH----------HHHHHHTTCSEEEETTTS
T ss_pred             HhccCCCCCEEEEECCCCHHHHHHHHHHH-----HCCCEEEEEeCC---HHH----------HHHHHHcCCcEEEeCCCc
Confidence            45789999996665546666666666666     899988776211   100          012344667888888888


Q ss_pred             HHHHHHHHHHHHhC--CeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           87 EAIETAQQLAHKEG--LLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        87 EAi~aaR~LAr~EG--I~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +..+..+++....|  +.+..+++..+..+++..+.    +.++|.
T Consensus       204 ~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~l~~----~G~iv~  245 (334)
T 3qwb_A          204 DILRQVLKFTNGKGVDASFDSVGKDTFEISLAALKR----KGVFVS  245 (334)
T ss_dssp             CHHHHHHHHTTTSCEEEEEECCGGGGHHHHHHHEEE----EEEEEE
T ss_pred             hHHHHHHHHhCCCCceEEEECCChHHHHHHHHHhcc----CCEEEE
Confidence            87777777764444  35566666667777777653    346666

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=88.85  E-value=1.2  Score=38.69  Aligned_cols=103  Identities=16%  Similarity=0.124  Sum_probs=65.5

Q ss_pred             HHHcCC-CCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcC-CcEEEEecccccCCCcceeccccccccccccccceeEEE
Q 043034            5 AEDKGL-ITPGKSILIEITSSNTGIGLAFISAVRIAAVRG-YKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQ   82 (197)
Q Consensus         5 ae~~G~-i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~G-yk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~   82 (197)
                      |.++.. ++||++++|-. +|..|...+.+++     .+| .+++.+-..   +.          .....+.+|.|.++.
T Consensus       186 al~~~~~~~~g~~VlV~G-aG~vG~~aiqlak-----~~Ga~~Vi~~~~~---~~----------~~~~~~~lGa~~vi~  246 (380)
T 1vj0_A          186 AFDEYPESFAGKTVVIQG-AGPLGLFGVVIAR-----SLGAENVIVIAGS---PN----------RLKLAEEIGADLTLN  246 (380)
T ss_dssp             HHHTCSSCCBTCEEEEEC-CSHHHHHHHHHHH-----HTTBSEEEEEESC---HH----------HHHHHHHTTCSEEEE
T ss_pred             HHHhcCCCCCCCEEEEEC-cCHHHHHHHHHHH-----HcCCceEEEEcCC---HH----------HHHHHHHcCCcEEEe
Confidence            445667 99999977777 8888888888888     999 688776211   00          011234567788887


Q ss_pred             cC---cHHHHHHHHHHHHHhCC--eeeehhH-HHHHHHHHHhcCCCCCCceEEE
Q 043034           83 VS---SEEAIETAQQLAHKEGL--LVGISSD-AAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        83 Vs---DeEAi~aaR~LAr~EGI--~VG~SSG-AaLAAAlklA~~~~~~g~~VVt  130 (197)
                      .+   +++..+..+++....|+  .+..+++ ..+..+++.++.    +.++|.
T Consensus       247 ~~~~~~~~~~~~v~~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~----~G~iv~  296 (380)
T 1vj0_A          247 RRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRR----GGFYSV  296 (380)
T ss_dssp             TTTSCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEE----EEEEEE
T ss_pred             ccccCcchHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHHhc----CCEEEE
Confidence            77   66666666666543343  4455544 466677777754    345665

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=88.69  E-value=1  Score=38.29  Aligned_cols=103  Identities=10%  Similarity=0.107  Sum_probs=59.4

Q ss_pred             HHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcC
Q 043034            5 AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVS   84 (197)
Q Consensus         5 ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~Vs   84 (197)
                      |.++..++||++++|-. +|..|...+.+++     .+|++++.+- ..  +.          .....+.+|.|.++..+
T Consensus       160 al~~~~~~~g~~VlV~G-aG~vG~~a~qla~-----~~Ga~Vi~~~-~~--~~----------~~~~~~~lGa~~~~~~~  220 (352)
T 1e3j_A          160 ACRRAGVQLGTTVLVIG-AGPIGLVSVLAAK-----AYGAFVVCTA-RS--PR----------RLEVAKNCGADVTLVVD  220 (352)
T ss_dssp             HHHHHTCCTTCEEEEEC-CSHHHHHHHHHHH-----HTTCEEEEEE-SC--HH----------HHHHHHHTTCSEEEECC
T ss_pred             HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCEEEEEc-CC--HH----------HHHHHHHhCCCEEEcCc
Confidence            44667899999977755 5766666666777     9999965541 11  00          00123456677777776


Q ss_pred             c-HHHHHHHHHHHH---HhC--CeeeehhHH-HHHHHHHHhcCCCCCCceEEE
Q 043034           85 S-EEAIETAQQLAH---KEG--LLVGISSDA-AAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        85 D-eEAi~aaR~LAr---~EG--I~VG~SSGA-aLAAAlklA~~~~~~g~~VVt  130 (197)
                      + ++..+..+++..   ..|  +.+..+++. .+..+++.++.    +.++|.
T Consensus       221 ~~~~~~~~i~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~----~G~iv~  269 (352)
T 1e3j_A          221 PAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRT----GGTLML  269 (352)
T ss_dssp             TTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCT----TCEEEE
T ss_pred             ccccHHHHHHHHhccccCCCCCEEEECCCCHHHHHHHHHHHhc----CCEEEE
Confidence            4 555555555543   123  344555443 45666666643    345665

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=88.33  E-value=2.6  Score=35.93  Aligned_cols=102  Identities=13%  Similarity=0.098  Sum_probs=61.0

Q ss_pred             HHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCC-cEEEEecccccCCCcceeccccccccccccccceeEEEc
Q 043034            5 AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGY-KSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQV   83 (197)
Q Consensus         5 ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gy-k~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~V   83 (197)
                      |.++..++||++++|-. +|..|...+.+++     .+|. +++.+-..     +.        .....+.+|.|.++..
T Consensus       163 al~~~~~~~g~~VlV~G-aG~vG~~aiqlak-----~~Ga~~Vi~~~~~-----~~--------~~~~a~~lGa~~vi~~  223 (356)
T 1pl8_A          163 ACRRGGVTLGHKVLVCG-AGPIGMVTLLVAK-----AMGAAQVVVTDLS-----AT--------RLSKAKEIGADLVLQI  223 (356)
T ss_dssp             HHHHHTCCTTCEEEEEC-CSHHHHHHHHHHH-----HTTCSEEEEEESC-----HH--------HHHHHHHTTCSEEEEC
T ss_pred             HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCCEEEEECCC-----HH--------HHHHHHHhCCCEEEcC
Confidence            44667899999966644 5767776667777     8999 66655210     00        0112345677877777


Q ss_pred             C---cHHHHHHHHHHHHHhCC--eeeehhHH-HHHHHHHHhcCCCCCCceEEE
Q 043034           84 S---SEEAIETAQQLAHKEGL--LVGISSDA-AAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        84 s---DeEAi~aaR~LAr~EGI--~VG~SSGA-aLAAAlklA~~~~~~g~~VVt  130 (197)
                      +   +++..+..+++.. .|.  .+..+++. .+..+++.++.    +.++|.
T Consensus       224 ~~~~~~~~~~~i~~~~~-~g~D~vid~~g~~~~~~~~~~~l~~----~G~iv~  271 (356)
T 1pl8_A          224 SKESPQEIARKVEGQLG-CKPEVTIECTGAEASIQAGIYATRS----GGTLVL  271 (356)
T ss_dssp             SSCCHHHHHHHHHHHHT-SCCSEEEECSCCHHHHHHHHHHSCT----TCEEEE
T ss_pred             cccccchHHHHHHHHhC-CCCCEEEECCCChHHHHHHHHHhcC----CCEEEE
Confidence            6   4666666666553 343  45555443 56666766643    346665

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=84.89  E-value=3.8  Score=35.24  Aligned_cols=97  Identities=10%  Similarity=0.023  Sum_probs=64.8

Q ss_pred             CCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcCcHHHHHH
Q 043034           12 TPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEAIET   91 (197)
Q Consensus        12 ~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~VsDeEAi~a   91 (197)
                      +||++++|=..+|..|...+.+++     .+|.+++.+.  .  +..          ....+.+|.|.++..++++..+.
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~-----~~Ga~Vi~~~--~--~~~----------~~~~~~lGa~~vi~~~~~~~~~~  223 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLR-----LSGYIPIATC--S--PHN----------FDLAKSRGAEEVFDYRAPNLAQT  223 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHH-----HTTCEEEEEE--C--GGG----------HHHHHHTTCSEEEETTSTTHHHH
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHH-----HCCCEEEEEe--C--HHH----------HHHHHHcCCcEEEECCCchHHHH
Confidence            899998887777888888888888     9999887663  1  211          12345677899998888887777


Q ss_pred             HHHHHHH-hCCeeeehhH-HHHHHHHHHhcCCCCCCceEEE
Q 043034           92 AQQLAHK-EGLLVGISSD-AAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        92 aR~LAr~-EGI~VG~SSG-AaLAAAlklA~~~~~~g~~VVt  130 (197)
                      .+++... --+.+..+++ ..+..+++...+   ++.++|.
T Consensus       224 v~~~t~g~~d~v~d~~g~~~~~~~~~~~l~~---~~G~iv~  261 (371)
T 3gqv_A          224 IRTYTKNNLRYALDCITNVESTTFCFAAIGR---AGGHYVS  261 (371)
T ss_dssp             HHHHTTTCCCEEEESSCSHHHHHHHHHHSCT---TCEEEEE
T ss_pred             HHHHccCCccEEEECCCchHHHHHHHHHhhc---CCCEEEE
Confidence            7776532 1245555655 456667776532   2446666

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=84.41  E-value=2.7  Score=36.70  Aligned_cols=102  Identities=14%  Similarity=0.145  Sum_probs=60.1

Q ss_pred             CCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCC-cEEEEecccccCCCcceeccccccccccccccceeEEEcCcHH
Q 043034            9 GLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGY-KSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEE   87 (197)
Q Consensus         9 G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gy-k~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~VsDeE   87 (197)
                      +.++||++++|=.. |..|...+.+++     .+|. +++.+- ..  +.          .....+.+|.|.++..++++
T Consensus       209 ~~~~~g~~VlV~Ga-G~vG~~aiqlak-----~~Ga~~Vi~~~-~~--~~----------~~~~~~~lGa~~vi~~~~~~  269 (404)
T 3ip1_A          209 GGIRPGDNVVILGG-GPIGLAAVAILK-----HAGASKVILSE-PS--EV----------RRNLAKELGADHVIDPTKEN  269 (404)
T ss_dssp             CCCCTTCEEEEECC-SHHHHHHHHHHH-----HTTCSEEEEEC-SC--HH----------HHHHHHHHTCSEEECTTTSC
T ss_pred             cCCCCCCEEEEECC-CHHHHHHHHHHH-----HcCCCEEEEEC-CC--HH----------HHHHHHHcCCCEEEcCCCCC
Confidence            48999999777554 767766666677     9999 666541 11  00          01123456778888777777


Q ss_pred             HHHHHHHHHHHhCC--eeeehhHH--HHHHHHHHh-cCCCCCCceEEE
Q 043034           88 AIETAQQLAHKEGL--LVGISSDA--AAAASIKVA-KIPENDRILIVV  130 (197)
Q Consensus        88 Ai~aaR~LAr~EGI--~VG~SSGA--aLAAAlklA-~~~~~~g~~VVt  130 (197)
                      ..+..+++....|+  .+..+++.  .+..+.+.. +... ++.++|+
T Consensus       270 ~~~~i~~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~-~~G~iv~  316 (404)
T 3ip1_A          270 FVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARG-INATVAI  316 (404)
T ss_dssp             HHHHHHHHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSC-CCCEEEE
T ss_pred             HHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccC-CCcEEEE
Confidence            77777777654343  45555444  444555554 1111 3445665

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=83.64  E-value=3.5  Score=34.92  Aligned_cols=97  Identities=10%  Similarity=0.129  Sum_probs=59.5

Q ss_pred             CCC-CEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcCcHHHHH
Q 043034           12 TPG-KSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEAIE   90 (197)
Q Consensus        12 ~pG-~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~VsDeEAi~   90 (197)
                      +|| +++||=+-+|..|...+.+++     .+|.+++.+-. .  +..          ......+|.|.++..++++..+
T Consensus       162 ~~g~~~vli~gg~g~vG~~a~qla~-----~~Ga~Vi~~~~-~--~~~----------~~~~~~~Ga~~~~~~~~~~~~~  223 (349)
T 3pi7_A          162 QEGEKAFVMTAGASQLCKLIIGLAK-----EEGFRPIVTVR-R--DEQ----------IALLKDIGAAHVLNEKAPDFEA  223 (349)
T ss_dssp             HHCCSEEEESSTTSHHHHHHHHHHH-----HHTCEEEEEES-C--GGG----------HHHHHHHTCSEEEETTSTTHHH
T ss_pred             hCCCCEEEEeCCCcHHHHHHHHHHH-----HCCCEEEEEeC-C--HHH----------HHHHHHcCCCEEEECCcHHHHH
Confidence            566 564554445555555555555     89998877621 0  111          1123456788888888888888


Q ss_pred             HHHHHHHHhCC--eeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           91 TAQQLAHKEGL--LVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        91 aaR~LAr~EGI--~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      ..+++....|+  .+..+++..+..+++.++    ++.++|.
T Consensus       224 ~v~~~~~~~g~D~vid~~g~~~~~~~~~~l~----~~G~iv~  261 (349)
T 3pi7_A          224 TLREVMKAEQPRIFLDAVTGPLASAIFNAMP----KRARWII  261 (349)
T ss_dssp             HHHHHHHHHCCCEEEESSCHHHHHHHHHHSC----TTCEEEE
T ss_pred             HHHHHhcCCCCcEEEECCCChhHHHHHhhhc----CCCEEEE
Confidence            88888765554  566666666666666654    3446666

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=83.15  E-value=1.9  Score=37.21  Aligned_cols=39  Identities=15%  Similarity=0.114  Sum_probs=28.9

Q ss_pred             HHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCC-cEEEE
Q 043034            5 AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGY-KSYHC   49 (197)
Q Consensus         5 ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gy-k~~~~   49 (197)
                      +.+++.++||++++|=. .|..|...+.+++     .+|. +++.+
T Consensus       174 ~l~~~~~~~g~~VlV~G-aG~vG~~aiqlak-----~~Ga~~Vi~~  213 (370)
T 4ej6_A          174 GVDLSGIKAGSTVAILG-GGVIGLLTVQLAR-----LAGATTVILS  213 (370)
T ss_dssp             HHHHHTCCTTCEEEEEC-CSHHHHHHHHHHH-----HTTCSEEEEE
T ss_pred             HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHH-----HcCCCEEEEE
Confidence            45778899999977755 4777777777777     9999 56554

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=82.51  E-value=2.1  Score=35.95  Aligned_cols=101  Identities=11%  Similarity=0.162  Sum_probs=63.6

Q ss_pred             HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceecccccccccc-ccccceeEEEcCc
Q 043034            7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLI-QASCHEYCFQVSS   85 (197)
Q Consensus         7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~i-eGiGIDeiv~VsD   85 (197)
                      +++.++||++++|=..||..|...+.+++     .+|.+++.+-..   +..          .... +.+|.|.++..++
T Consensus       143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~-----~~Ga~Vi~~~~~---~~~----------~~~~~~~~g~~~~~~~~~  204 (336)
T 4b7c_A          143 DVGQPKNGETVVISGAAGAVGSVAGQIAR-----LKGCRVVGIAGG---AEK----------CRFLVEELGFDGAIDYKN  204 (336)
T ss_dssp             HTTCCCTTCEEEESSTTSHHHHHHHHHHH-----HTTCEEEEEESS---HHH----------HHHHHHTTCCSEEEETTT
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHH-----HCCCEEEEEeCC---HHH----------HHHHHHHcCCCEEEECCC
Confidence            78899999997775556666666666666     999988776211   100          0122 4566788888888


Q ss_pred             HHHHHHHHHHHHHhC--CeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           86 EEAIETAQQLAHKEG--LLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        86 eEAi~aaR~LAr~EG--I~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      ++..+..+++.. .|  +++..+++..+..+++..+.    +.++|.
T Consensus       205 ~~~~~~~~~~~~-~~~d~vi~~~g~~~~~~~~~~l~~----~G~iv~  246 (336)
T 4b7c_A          205 EDLAAGLKRECP-KGIDVFFDNVGGEILDTVLTRIAF----KARIVL  246 (336)
T ss_dssp             SCHHHHHHHHCT-TCEEEEEESSCHHHHHHHHTTEEE----EEEEEE
T ss_pred             HHHHHHHHHhcC-CCceEEEECCCcchHHHHHHHHhh----CCEEEE
Confidence            777777776652 33  35555666556556655543    446666

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=80.95  E-value=2.1  Score=38.86  Aligned_cols=41  Identities=17%  Similarity=0.098  Sum_probs=28.5

Q ss_pred             HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034            6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC   49 (197)
Q Consensus         6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~   49 (197)
                      ..++.+..|+++|  .|.|++|||+|..-+ +..+..|++++++
T Consensus        52 ~~~~~~~~gK~aL--VTGassGIG~A~aia-~ala~~Ga~Vi~~   92 (418)
T 4eue_A           52 KKAIGFRGPKKVL--IVGASSGFGLATRIS-VAFGGPEAHTIGV   92 (418)
T ss_dssp             HHSCCCCCCSEEE--EESCSSHHHHHHHHH-HHHSSSCCEEEEE
T ss_pred             hccCcCCCCCEEE--EECCCcHHHHHHHHH-HHHHhCCCEEEEE
Confidence            4567777787744  488999999994333 2234569999887

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=80.70  E-value=7.7  Score=32.44  Aligned_cols=97  Identities=13%  Similarity=0.019  Sum_probs=60.4

Q ss_pred             HHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcC
Q 043034            5 AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVS   84 (197)
Q Consensus         5 ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~Vs   84 (197)
                      +.++..++||++++|=. .|..|...+.+++     .+|.+.+++-...-+            .....+.+|.|+++..+
T Consensus       152 ~~~~~~~~~g~~VlV~G-aG~vG~~aiq~ak-----~~G~~~vi~~~~~~~------------k~~~a~~lGa~~~i~~~  213 (346)
T 4a2c_A          152 AFHLAQGCENKNVIIIG-AGTIGLLAIQCAV-----ALGAKSVTAIDISSE------------KLALAKSFGAMQTFNSS  213 (346)
T ss_dssp             HHHHTTCCTTSEEEEEC-CSHHHHHHHHHHH-----HTTCSEEEEEESCHH------------HHHHHHHTTCSEEEETT
T ss_pred             HHHHhccCCCCEEEEEC-CCCcchHHHHHHH-----HcCCcEEEEEechHH------------HHHHHHHcCCeEEEeCC
Confidence            56778899999966654 4666666666777     999987665322110            01234567788888888


Q ss_pred             cHHHHHHHHHHHHHhCC--eeeehh-HHHHHHHHHHhc
Q 043034           85 SEEAIETAQQLAHKEGL--LVGISS-DAAAAASIKVAK  119 (197)
Q Consensus        85 DeEAi~aaR~LAr~EGI--~VG~SS-GAaLAAAlklA~  119 (197)
                      +++..+..+.+....|.  .+..++ +..+..++++++
T Consensus       214 ~~~~~~~~~~~~~~~g~d~v~d~~G~~~~~~~~~~~l~  251 (346)
T 4a2c_A          214 EMSAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAG  251 (346)
T ss_dssp             TSCHHHHHHHHGGGCSSEEEEECSCSHHHHHHHHHHCC
T ss_pred             CCCHHHHHHhhcccCCcccccccccccchhhhhhheec
Confidence            77777777666554443  223332 445666666664

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=80.37  E-value=2.7  Score=35.24  Aligned_cols=40  Identities=15%  Similarity=0.202  Sum_probs=31.4

Q ss_pred             HHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034            5 AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC   49 (197)
Q Consensus         5 ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~   49 (197)
                      |.+++.++||++++|=.-+|..|...+.+++     .+|.+++.+
T Consensus       144 al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-----~~Ga~vi~~  183 (321)
T 3tqh_A          144 ALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-----QKGTTVITT  183 (321)
T ss_dssp             HHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-----HTTCEEEEE
T ss_pred             HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-----HcCCEEEEE
Confidence            4578899999996665457777777777777     999998776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	197
d1z7wa1	320	c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (C	6e-16
d1z7wa1	320	c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (C	8e-05
d1y7la1	310	c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (C	2e-14
d1wkva1	382	c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (C	4e-14
d1wkva1	382	c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (C	8e-06
d2bhsa1	292	c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (C	3e-13
d1ve1a1	302	c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (C	1e-12
d1jbqa_	355	c.79.1.1 (A:) Cystathionine beta-synthase {Human (	2e-12
d1o58a_	293	c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei	9e-12
d1fcja_	302	c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei	2e-10
d1v71a1	318	c.79.1.1 (A:6-323) Hypothetical protein C320.14 (S	1e-09
d1v8za1	386	c.79.1.1 (A:1-386) Tryptophan synthase, beta-subun	1e-09
d1j0aa_	325	c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de	4e-08
d1tyza_	338	c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de	7e-08
d1ve5a1	310	c.79.1.1 (A:2-311) Threonine deaminase {Thermus th	3e-07
d1f2da_	341	c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de	4e-07
d1qopb_	390	c.79.1.1 (B:) Tryptophan synthase, beta-subunit {S	7e-07
d1tdja1	331	c.79.1.1 (A:5-335) Threonine deaminase {Escherichi	7e-05
d1p5ja_	319	c.79.1.1 (A:) L-serine dehydratase {Human (Homo sa	0.001
d1v7ca_	351	c.79.1.1 (A:) Threonine synthase {Thermus thermoph	0.002

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 320

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 72.2 bits (176), Expect = 6e-16
 Identities = 48/116 (41%), Positives = 59/116 (50%), Gaps = 34/116 (29%)

Query: 72  IQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVS 131
           +     +   QVSS+E+I+ A+QLA KEGLLVGISS AAAAA+IK+A+ PEN   L V  
Sbjct: 233 LNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVA- 291

Query: 132 LISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAE 187
                                            + PS GERYLST LFD+   EAE
Sbjct: 292 ---------------------------------IFPSFGERYLSTVLFDATRKEAE 314

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 320

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 39.9 bits (92), Expect = 8e-05
 Identities = 27/87 (31%), Positives = 39/87 (44%)

Query: 1   MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYV 60
           MI DAE KGLI PG+S+LIE TS NTG+GLAF +A +   +         T         
Sbjct: 51  MISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAF 110

Query: 61  VLSHVVMGKHLIQASCHEYCFQVSSEE 87
            +  V+               ++ ++ 
Sbjct: 111 GVELVLTDPAKGMKGAIAKAEEILAKT 137

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Length = 310

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

 Score = 67.7 bits (164), Expect = 2e-14
 Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 34/105 (32%)

Query: 75  SCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLIS 134
           S  +    V S+ A+ TA++L  +EG+L GISS AA AA+ ++AK+PE    LIVV    
Sbjct: 240 SIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLPEFADKLIVV---- 295

Query: 135 YKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELF 179
                                         +LPS  ERYLST LF
Sbjct: 296 ------------------------------ILPSASERYLSTALF 310

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 382

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 67.5 bits (164), Expect = 4e-14
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 34/95 (35%)

Query: 82  QVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSF 141
           +V+ EEA+E   ++A  +GL++G S  AA  A  K A   + +    VV           
Sbjct: 316 EVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVV----------- 364

Query: 142 CINSLVNQSPCPFCSLHEACHQFLLPSGGERYLST 176
                                  ++P  G +YLS 
Sbjct: 365 -----------------------VVPDTGFKYLSL 376

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 382

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 42.9 bits (100), Expect = 8e-06
 Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 8/79 (10%)

Query: 1   MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYV 60
           +I     +  +  G S++ + TSSN G+ L+      +A + GY++             +
Sbjct: 133 IISRLSRR--VEKG-SLVADATSSNFGVALSA-----VARLYGYRARVYLPGAAEEFGKL 184

Query: 61  VLSHVVMGKHLIQASCHEY 79
           +   +     +   +    
Sbjct: 185 LPRLLGAQVIVDPEAPSTV 203

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Length = 292

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

 Score = 64.2 bits (155), Expect = 3e-13
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 36/100 (36%)

Query: 80  CFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYF 139
              +   +A  T ++LA +EG+  G+SS  A A +++VAK   +  ++ +          
Sbjct: 228 VLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAKANPDAVVVAI---------- 277

Query: 140 SFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELF 179
                                     +   G+RYLST +F
Sbjct: 278 --------------------------ICDRGDRYLSTGVF 291

>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Length = 302

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermus thermophilus [TaxId: 274]

 Score = 63.0 bits (152), Expect = 1e-12
 Identities = 31/160 (19%), Positives = 53/160 (33%), Gaps = 39/160 (24%)

Query: 23  SSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKH--LIQASCHEYC 80
            + TG+G      +    V   +                   +  G     +  S  +  
Sbjct: 178 GTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGV 237

Query: 81  FQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAK-IPENDRILIVVSLISYKLYF 139
            QV  E+A   A++LA +EGL +G+SS     A+++VA+ +    R+  +          
Sbjct: 238 IQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVARELGPGKRVACI---------- 287

Query: 140 SFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELF 179
                                      P GG +YLST L+
Sbjct: 288 --------------------------SPDGGWKYLSTPLY 301

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (151), Expect = 2e-12
 Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 37/135 (27%)

Query: 47  YHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGIS 106
                +    +  V          ++  +  +  F+ + EEA   A+ L  +EGLL G S
Sbjct: 248 PEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGS 307

Query: 107 SDAAAAASIKVAK-IPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFL 165
           + +  A ++K A+ + E  R +++                                    
Sbjct: 308 AGSTVAVAVKAAQELQEGQRCVVI------------------------------------ 331

Query: 166 LPSGGERYLSTELFD 180
           LP     Y++  L D
Sbjct: 332 LPDSVRNYMTKFLSD 346

>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Length = 293

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

 Score = 60.1 bits (145), Expect = 9e-12
 Identities = 44/151 (29%), Positives = 55/151 (36%), Gaps = 52/151 (34%)

Query: 42  RGYKSYHCPTRHLHHSE---YVVLSHVVMGKHLIQ------------ASCHEYCFQVSSE 86
           R  K +      +   E     VLS    GKH IQ             S  +    V  E
Sbjct: 178 RVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDE 237

Query: 87  EAIETAQQLAHKEGLLVGISSDAAAAASIKVAK-IPENDRILIVVSLISYKLYFSFCINS 145
           EA E A+ LA KEGLLVGISS A  AA++KVA+ +  + R++ V                
Sbjct: 238 EAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLGPDARVVTV---------------- 281

Query: 146 LVNQSPCPFCSLHEACHQFLLPSGGERYLST 176
                                P   ERYLS 
Sbjct: 282 --------------------APDHAERYLSI 292

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Length = 302

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

 Score = 56.9 bits (136), Expect = 2e-10
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query: 76  CHEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV 130
             +    +++EEAI TA++L  +EG+L GISS AA AA++K+ +        IVV
Sbjct: 242 LIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVV 296

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 318

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 54.5 bits (130), Expect = 1e-09
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 47  YHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGIS 106
            H  T                   +I+    +    VS EE I+  +  A +  ++V  +
Sbjct: 220 VHIDTPKTIADGAQTQHLGNYTFSIIKEKVDDIL-TVSDEELIDCLKFYAARMKIVVEPT 278

Query: 107 SDAAAAASIKVAKIPENDRILIVVS 131
              + AA+  + +  +N RI I++S
Sbjct: 279 GCLSFAAARAMKEKLKNKRIGIIIS 303

>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 386

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 54.5 bits (130), Expect = 1e-09
 Identities = 22/114 (19%), Positives = 48/114 (42%), Gaps = 7/114 (6%)

Query: 25  NTGIGLAFISAVRIAAVRGYKSYHC------PTRHLHHSEYVVLSHVVMGKHLIQASCHE 78
            +G   A ++A ++    G  SY               +  +    V      ++     
Sbjct: 258 ESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRA 317

Query: 79  YCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAK-IPENDRILIVVS 131
               V+ EEA++   +L+  EG++  + S  A A ++K+AK +  ++ I++ +S
Sbjct: 318 EYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLS 371

>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 325

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 49.7 bits (117), Expect = 4e-08
 Identities = 12/95 (12%), Positives = 33/95 (34%), Gaps = 2/95 (2%)

Query: 39  AAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLAHK 98
            AV  +             E   L  V +             +   + E  +  +++  +
Sbjct: 214 IAVGRFGEVMTSKLDNLIKEAAELLGVKVEVRPELYDYSFGEYGKITGEVAQIIRKVGTR 273

Query: 99  EGLLVG-ISSDAAAAASIKVAK-IPENDRILIVVS 131
           EG+++  + +  A    + +A+     ++IL + +
Sbjct: 274 EGIILDPVYTGKAFYGLVDLARKGELGEKILFIHT 308

>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Length = 338

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Pseudomonas sp., strain ACP [TaxId: 306]

 Score = 49.3 bits (116), Expect = 7e-08
 Identities = 12/101 (11%), Positives = 29/101 (28%), Gaps = 5/101 (4%)

Query: 35  AVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQ 94
                  +  +      R       +    +     L +       + + +E  +E  + 
Sbjct: 223 DASAKPAQTREQITRIARQTAEKVGLERDIMRADVVLDE-RFAGPEYGLPNEGTLEAIRL 281

Query: 95  LAHKEGLLVGISSDAAAAAS----IKVAKIPENDRILIVVS 131
            A  EG+L     +  +       ++  + PE  R+L    
Sbjct: 282 CARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLYAHL 322

>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Length = 310

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Thermus thermophilus [TaxId: 274]

 Score = 47.3 bits (111), Expect = 3e-07
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 72  IQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVS 131
           I     +    VS E  +E  + L  +   +V  +     AA ++         + +++S
Sbjct: 244 ILRERVDGILTVSEEALLEAERLLFTRTKQVVEPTGALPLAAVLEHGARL-PQTLALLLS 302

>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Length = 341

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Yeast (Hansenula saturnus) [TaxId: 4906]

 Score = 47.0 bits (110), Expect = 4e-07
 Identities = 13/97 (13%), Positives = 24/97 (24%), Gaps = 9/97 (9%)

Query: 39  AAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLAHK 98
              +                        +            C+ V +E  IE  +  A +
Sbjct: 232 EKTKEQTLRIANNTAKLIGVEHEFKDFTLDTR-----FAYPCYGVPNEGTIEAIRTCAEQ 286

Query: 99  EGLLVG-ISSDAAAAASIKVAK---IPENDRILIVVS 131
           EG+L   +    +    I + K         +L V  
Sbjct: 287 EGVLTDPVYEGKSMQGLIALIKEDYFKPGANVLYVHL 323

>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Length = 390

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Salmonella typhimurium [TaxId: 90371]

 Score = 46.4 bits (109), Expect = 7e-07
 Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 3/133 (2%)

Query: 1   MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYV 60
                   G+   G  I      +    G   I     A +           +   +   
Sbjct: 245 NDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLD 304

Query: 61  VLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAK- 119
             S      +L      +Y   ++ +EA+E  + L   EG++  + S  A A ++K+ + 
Sbjct: 305 FPSVGPQHAYLNSIGRADY-VSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMRE 363

Query: 120 -IPENDRILIVVS 131
              +   +++ +S
Sbjct: 364 QPEKEQLLVVNLS 376

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Length = 331

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

 Score = 40.3 bits (93), Expect = 7e-05
 Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 2/62 (3%)

Query: 72  IQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE--NDRILIV 129
           +     +    V S+      + L      +   S   A A   K   +     +R+  +
Sbjct: 250 LCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNIRGERLAHI 309

Query: 130 VS 131
           +S
Sbjct: 310 LS 311

>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 319

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: L-serine dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.001
 Identities = 12/93 (12%), Positives = 30/93 (32%), Gaps = 9/93 (9%)

Query: 48  HCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSEEAIETAQQLAHKEGLLVGISS 107
               +    ++ + +  V      +      +   +S +EA+   ++    E +LV  + 
Sbjct: 208 VSLPKITSVAKALGVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPAC 267

Query: 108 DAAAAASIKVA---------KIPENDRILIVVS 131
            AA AA                     ++++V 
Sbjct: 268 GAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVC 300

>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Length = 351

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Thermus thermophilus [TaxId: 274]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 80  CFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVA---KIPENDRILIVVS 131
              V+ EE +   + LA +EG+    +S AA A   K+    ++     +++ ++
Sbjct: 263 IEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFKLLREGRLEPESTVVLTLT 317

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	197
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	99.98
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	99.96
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	99.94
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	99.94
d1ve1a1	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	99.94
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	99.93
d1o58a_	293	O-acetylserine sulfhydrylase (Cysteine synthase) {	99.93
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	99.88
d1p5ja_	319	L-serine dehydratase {Human (Homo sapiens) [TaxId:	99.75
d1v7ca_	351	Threonine synthase {Thermus thermophilus [TaxId: 2	99.75
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	99.75
d1v8za1	386	Tryptophan synthase, beta-subunit {Archaeon Pyroco	99.75
d1qopb_	390	Tryptophan synthase, beta-subunit {Salmonella typh	99.74
d1ve5a1	310	Threonine deaminase {Thermus thermophilus [TaxId:	99.69
d1v71a1	318	Hypothetical protein C320.14 (SPCC320.14, SPCC330.	99.64
d1e5xa_	477	Threonine synthase {Mouse-ear cress (Arabidopsis t	99.58
d1tyza_	338	1-aminocyclopropane-1-carboxylate deaminase {Pseud	99.39
d1f2da_	341	1-aminocyclopropane-1-carboxylate deaminase {Yeast	99.3
d1j0aa_	325	1-aminocyclopropane-1-carboxylate deaminase {Archa	99.28
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	95.64
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.26
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	94.14
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	93.66
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.35
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.09
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	91.39
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	90.3
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	89.93
d1vb3a1	428	Threonine synthase {Escherichia coli [TaxId: 562]}	89.79
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	89.62
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	89.38
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	89.28
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	88.9
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	87.59
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	86.98
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	85.96
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	85.77
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	84.9
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	81.84
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	81.84
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	81.39

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.98  E-value=7.9e-33  Score=239.46  Aligned_cols=152  Identities=56%  Similarity=0.731  Sum_probs=134.5

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-------------------------------   49 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-------------------------------   49 (197)
                      ||.+|+++|.++++...||++||||+|+|+|++|+     .+|++++++                               
T Consensus        51 ~i~~a~~~g~~~~~~~~vv~aSsGN~g~a~A~~a~-----~~g~~~~iv~p~~~~~~k~~~i~~~Ga~vi~~~~~~~~~~  125 (320)
T d1z7wa1          51 MISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAA-----AKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKG  125 (320)
T ss_dssp             HHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHH-----HHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHH
T ss_pred             HHHHHHHcCCCCCCCceEEeeCCchHHHHHHHHHH-----hhccceEEeehhhhhhhhhhhhhccCcceEEeeccccccc
Confidence            57899999999988555999999999999999999     999999999                               


Q ss_pred             --------------------------eccccc-----------------------------------------------C
Q 043034           50 --------------------------PTRHLH-----------------------------------------------H   56 (197)
Q Consensus        50 --------------------------p~~h~~-----------------------------------------------p   56 (197)
                                                |.+|+.                                               |
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~~t~~~EI~~q~~~~~D~vv~~vGgGg~~~Gi~~~~k~~~~~~~~igve~  205 (320)
T d1z7wa1         126 AIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEP  205 (320)
T ss_dssp             HHHHHHHHHHHCTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             cchhHHHHHHhCCCceecccccccchHHHhhhhHHHHHHHhccCCCCEEEeCCCCCcccchhhhhhhhhhcceeeecccc
Confidence                                      111221                                               4


Q ss_pred             CCcceecccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCC
Q 043034           57 SEYVVLSHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEND  124 (197)
Q Consensus        57 ~~~~~~~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~  124 (197)
                      .++..+.+..++++.++|||            +|+++.|+|+|+++++++|+++|||++|||||++++||++++++...+
T Consensus       206 ~~s~~~~~~~~~~~~~~gig~~~~~~~~~~~~id~~~~V~d~e~~~a~~~l~~~eGi~ve~ssga~~aaa~k~a~~~~~~  285 (320)
T d1z7wa1         206 VESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENA  285 (320)
T ss_dssp             GGGCGGGTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHTSGGGT
T ss_pred             cCCccccCCCCCCceeeeccCCcCcchhhhhhcceeeccCHHHHHHHHHHHHHHCCEEEehHHHHHHHHHHHHHhhccCC
Confidence            56666667777889999998            899999999999999999999999999999999999999999876567


Q ss_pred             CceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCchhHHHHhhccc
Q 043034          125 RILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEAETCLL  191 (197)
Q Consensus       125 g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~~~~~~~~~~~  191 (197)
                      +++||+                                  |+||+|+|||||.|||+|++|.+.++.
T Consensus       286 ~~~VV~----------------------------------i~~d~G~kYlst~~~d~~~~e~~~~~~  318 (320)
T d1z7wa1         286 GKLFVA----------------------------------IFPSFGERYLSTVLFDATRKEAEAMTF  318 (320)
T ss_dssp             TCEEEE----------------------------------EECBBGGGGTTSGGGHHHHHHHHTCCC
T ss_pred             CCEEEE----------------------------------EECCCchhhcccccCHHHHHHHhcCCC
Confidence            899999                                  999999999999999999999987764

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.9e-29  Score=221.23  Aligned_cols=145  Identities=33%  Similarity=0.468  Sum_probs=120.9

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-------------------------------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-------------------------------   49 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-------------------------------   49 (197)
                      ||.+|+++|+++|+++ |||+||||+|+++|++|+     .+|++++++                               
T Consensus        84 ~i~~a~~~g~~~~~~~-vv~aSsGN~g~a~A~~a~-----~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~v~~~~~~~~  157 (355)
T d1jbqa_          84 MIEDAERDGTLKPGDT-IIEPTSGNTGIGLALAAA-----VRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDS  157 (355)
T ss_dssp             HHHHHHHHTCSCTTCE-EEEECSSHHHHHHHHHHH-----HHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC------
T ss_pred             HHHHHHHcCCcccCce-EEEecccchhhHHHHHHH-----hccCCeEEEeeccchHHHHHHHHhcCCeEEEecccccchh
Confidence            5889999999999998 999999999999999999     999999999                               


Q ss_pred             -----------------------------eccccc---------------------------------------------
Q 043034           50 -----------------------------PTRHLH---------------------------------------------   55 (197)
Q Consensus        50 -----------------------------p~~h~~---------------------------------------------   55 (197)
                                                   +.+||.                                             
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~kii~  237 (355)
T d1jbqa_         158 PESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIG  237 (355)
T ss_dssp             -CCHHHHHHHHHHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred             hhhhhhHHHHHHHhccccccccccCcccchhhhcccchhhhhhhcCCCCCeeEecccCCchHHHHHHHHhhcCCcceEEe
Confidence                                         011211                                             


Q ss_pred             --CCCcceecc-----cccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHH
Q 043034           56 --HSEYVVLSH-----VVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIK  116 (197)
Q Consensus        56 --p~~~~~~~~-----~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlk  116 (197)
                        |.++.....     .....+.++|++            +|+++.|+|+|+++++|+|+++|||++|||||++++|+++
T Consensus       238 vep~gs~~~~~~~~~~~~~~~~~i~gi~~~~~~~~~~~~~~~~~~~v~D~ea~~~~~~L~~~eGi~vepSsaa~laa~l~  317 (355)
T d1jbqa_         238 VDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVK  317 (355)
T ss_dssp             EEETTCSCSSSGGGGCCSCCCCSCCSCCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHSCCCBCHHHHHHHHHHHH
T ss_pred             ecccCCcccccccccccccccccccccccccchhhhhhhheeeeccCCHHHHHHHHHHHHHHhCcEEeHHHHHHHHHHHH
Confidence              222221111     111235677776            8999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCCceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccCchhHHHH
Q 043034          117 VAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELFDSITHEA  186 (197)
Q Consensus       117 lA~~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~~~~~~~~  186 (197)
                      +++++. ++++||+                                  |+||+|+||+||.|+|+|+.+.
T Consensus       318 ~~~~~~-~g~~VVv----------------------------------vlcd~G~kY~s~~~~d~~~~~~  352 (355)
T d1jbqa_         318 AAQELQ-EGQRCVV----------------------------------ILPDSVRNYMTKFLSDRWMLQK  352 (355)
T ss_dssp             HGGGCC-TTCEEEE----------------------------------EECBBGGGGTTTTTCHHHHHHT
T ss_pred             HHHhcC-CcCEEEE----------------------------------EECCCCccccccccCHHHHHHC
Confidence            999874 7899999                                  9999999999999999998764

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.94  E-value=1.2e-27  Score=204.89  Aligned_cols=139  Identities=47%  Similarity=0.633  Sum_probs=115.2

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-----------------------e-------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-----------------------P-------   50 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-----------------------p-------   50 (197)
                      ||.+|+++|.++||++ |||+||||+|+++|++|+     .+|++++++                       |       
T Consensus        48 ~i~~a~~~g~~~~~~~-vv~~SsGN~g~a~A~~a~-----~~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~~~~~~~~~~  121 (310)
T d1y7la1          48 MVWQAEKDGTLTKGKE-IVDATSGNTGIALAYVAA-----ARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKG  121 (310)
T ss_dssp             HHHHHHHTTSSCTTCE-EEESCCSHHHHHHHHHHH-----HHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHH
T ss_pred             HHHHHHHcCCCCCCce-eeeecCCCchHHHHHHHH-----HhhccccccchhhhhhhhhhhHHHhCCceEeccCccccch
Confidence            5789999999999998 999999999999999999     999999999                       0       


Q ss_pred             ----------------------------ccccc-----------------------------------------------
Q 043034           51 ----------------------------TRHLH-----------------------------------------------   55 (197)
Q Consensus        51 ----------------------------~~h~~-----------------------------------------------   55 (197)
                                                  ..|+.                                               
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~Ei~~~~~~~~d~vv~~~G~Gg~~~G~~~~lk~~~~~~~~~i~v  201 (310)
T d1y7la1         122 AIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAV  201 (310)
T ss_dssp             HHHHHHHHHHHCTTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHTSCCCCEEEEE
T ss_pred             hhHHHHHHHHhhcCccccCCCCcchhhHHHhhhhHHHHHHHhcCCCCCEEEecCcCCcchhHHHHHHHHhhcccceeccc
Confidence                                        01111                                               


Q ss_pred             -CCCcceecc------cccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHH
Q 043034           56 -HSEYVVLSH------VVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIK  116 (197)
Q Consensus        56 -p~~~~~~~~------~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlk  116 (197)
                       |.++.....      ...+++.+.|+|            .|+++.|+|+|+++++++|+++||+++|||||++++||++
T Consensus       202 e~~~~~~~~~~~~~~~~~~~~~~~~gig~~~~~~~~~~~~~~~~~~v~d~ea~~~~~~l~~~eGi~vepssaa~laaa~~  281 (310)
T d1y7la1         202 EPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADR  281 (310)
T ss_dssp             EETTSCHHHHHHHTCCCCCCCCSCTTSCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHH
T ss_pred             cccCchhhhhhhcCCccccCCceeeecccccccHHHhhhhcceeccCCHHHHHHHHHHHHHHcCCEEeHHHHHHHHHHHH
Confidence             122211111      112356777777            7999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCCceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccC
Q 043034          117 VAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELF  179 (197)
Q Consensus       117 lA~~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~  179 (197)
                      ++++.+.++++||+                                  |+||+|+||+||.+|
T Consensus       282 ~a~~~~~~~~~vV~----------------------------------vlcd~g~kY~~t~~~  310 (310)
T d1y7la1         282 LAKLPEFADKLIVV----------------------------------ILPSASERYLSTALF  310 (310)
T ss_dssp             HHTSGGGTTCEEEE----------------------------------EECBBCSSCCCTTTC
T ss_pred             HHhhccCCcCEEEE----------------------------------EECCCcchhcCCCCC
Confidence            99775446889999                                  999999999999987

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=99.94  E-value=5.8e-27  Score=198.07  Aligned_cols=67  Identities=33%  Similarity=0.577  Sum_probs=64.1

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccceecccccCCCCCCccc
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCS  156 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~  156 (197)
                      +|+++.|+|+|+++++|+|+++|||++|||||++++++++++++.  ++++||+                          
T Consensus       225 ~~~~~~v~d~ea~~a~~~L~~~eGi~vepSsgaalaa~~~~~~~~--~~~~VV~--------------------------  276 (292)
T d2bhsa1         225 VDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAKAN--PDAVVVA--------------------------  276 (292)
T ss_dssp             CSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHTC--TTCEEEE--------------------------
T ss_pred             cceEEEcCHHHHHHHHHHHHHHcCeEEeHHHHHHHHHHHHHHHHC--cCCeEEE--------------------------
Confidence            899999999999999999999999999999999999999999875  6789999                          


Q ss_pred             cccccceeeeccCCccccCcccC
Q 043034          157 LHEACHQFLLPSGGERYLSTELF  179 (197)
Q Consensus       157 ~~~~~~~~i~~d~g~rYlst~~~  179 (197)
                              |+||+|+|||||.+|
T Consensus       277 --------il~~~G~kYlst~~~  291 (292)
T d2bhsa1         277 --------IICDRGDRYLSTGVF  291 (292)
T ss_dssp             --------EECBBSGGGGGGTCC
T ss_pred             --------EECCCCccccccccc
Confidence                    999999999999988

>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=5.9e-27  Score=198.89  Aligned_cols=138  Identities=41%  Similarity=0.586  Sum_probs=115.1

Q ss_pred             CHHHHHHcCCCCCC--CEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-----------------------------
Q 043034            1 MIKDAEDKGLITPG--KSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-----------------------------   49 (197)
Q Consensus         1 mi~~ae~~G~i~pG--~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-----------------------------   49 (197)
                      ||.+|+++|.++|+  ++ |||+||||+|+++|++|+     .+|++++++                             
T Consensus        47 ~i~~a~~~g~~~~~~~~~-vv~~SsGN~g~a~A~~a~-----~~g~~~~iv~p~~~~~~~~~~~~~~ga~~~~~~~~~~~  120 (302)
T d1ve1a1          47 MIKDAEERGILRPGSGQV-IVEPTSGNTGIGLAMIAA-----SRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRM  120 (302)
T ss_dssp             HHHHHHHTTSCCTTSCCE-EEESCCSHHHHHHHHHHH-----HHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTTTHH
T ss_pred             HHHHHHHhCCCCCCCCcE-EEEecCCcchhhhhhhhh-----ccCcceeEeeecccchheeehhhhhhhcchhcccccch
Confidence            47889999999986  55 999999999999999999     999999999                             


Q ss_pred             ---------------------------eccccc-----------------------------------------------
Q 043034           50 ---------------------------PTRHLH-----------------------------------------------   55 (197)
Q Consensus        50 ---------------------------p~~h~~-----------------------------------------------   55 (197)
                                                 +.+|+.                                               
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~EI~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~iigve  200 (302)
T d1ve1a1         121 LAAREEALRLKEELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVE  200 (302)
T ss_dssp             HHHHHHHHHHHHHHTCBCCCTTTCHHHHHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHTTCTTCEEEEEE
T ss_pred             HHHHHHhhhhhhccCccccccCccchhHHHHHHHHHHHHHHHcCCCCCeEEEeecCcHHHHHHHHHHHhcCCCCEEEEEE
Confidence                                       001111                                               


Q ss_pred             CCCcceecccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCC
Q 043034           56 HSEYVVLSHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEN  123 (197)
Q Consensus        56 p~~~~~~~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~  123 (197)
                      |.++..+.....+.+.++|++            +|+++.|+|+|+++++++|+++|||++|||||++++||++++++.. 
T Consensus       201 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~V~d~ea~~a~~~l~~~eGi~v~~ssgaa~aaal~~~~~~~-  279 (302)
T d1ve1a1         201 PARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVARELG-  279 (302)
T ss_dssp             EGGGCTTTTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHHC-
T ss_pred             ecccceeeeccccCcccCccCCCcCCchhhhhcceeeeecCHHHHHHHHHHHHHHcCCEEeccHHHHHHHHHHHhHHhC-
Confidence            223333333334456677776            8999999999999999999999999999999999999999998764 


Q ss_pred             CCceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCcccC
Q 043034          124 DRILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLSTELF  179 (197)
Q Consensus       124 ~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst~~~  179 (197)
                      ++++||+                                  |+||+|+||+||.+|
T Consensus       280 ~~~~Vv~----------------------------------i~~g~G~kY~st~~f  301 (302)
T d1ve1a1         280 PGKRVAC----------------------------------ISPDGGWKYLSTPLY  301 (302)
T ss_dssp             TTCEEEE----------------------------------EECBBSGGGTTSTTT
T ss_pred             ccCeEEE----------------------------------EECCCCchhcChhhc
Confidence            7899999                                  999999999999887

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.93  E-value=3.4e-27  Score=211.78  Aligned_cols=69  Identities=32%  Similarity=0.324  Sum_probs=63.5

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccceecccccCCCCCCccc
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFSFCINSLVNQSPCPFCS  156 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~  156 (197)
                      +|+++.|+|+||++++|+|+++|||++|||||++++||++++++...++++||+                          
T Consensus       311 ~~~i~~Vsd~Eai~a~r~La~~EGI~vgpSSGaavaaa~k~a~~~~~~~~~vVv--------------------------  364 (382)
T d1wkva1         311 SYTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVV--------------------------  364 (382)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHTTCSCSEEEEE--------------------------
T ss_pred             ceEEEEECHHHHHHHHHHHHHHcCCEEcHHHHHHHHHHHHHHhhccCCCCCEEE--------------------------
Confidence            678999999999999999999999999999999999999999876546678999                          


Q ss_pred             cccccceeeeccCCccccCcccC
Q 043034          157 LHEACHQFLLPSGGERYLSTELF  179 (197)
Q Consensus       157 ~~~~~~~~i~~d~g~rYlst~~~  179 (197)
                              |+||+|+|||||.|+
T Consensus       365 --------IlcD~G~rYlstiyN  379 (382)
T d1wkva1         365 --------VVPDTGFKYLSLVQN  379 (382)
T ss_dssp             --------EECBBGGGCHHHHHH
T ss_pred             --------EECCCCccchHhhcc
Confidence                    999999999999664

>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=1.7e-26  Score=196.58  Aligned_cols=133  Identities=45%  Similarity=0.561  Sum_probs=116.6

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-e-----------------------------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-P-----------------------------   50 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-p-----------------------------   50 (197)
                      +|.+|+++|.+++|   |||+||||+|+|+|++|+     .+|++++++ |                             
T Consensus        44 ~i~~a~~~g~~~~~---vv~~SsGN~g~a~A~~a~-----~~g~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~  115 (293)
T d1o58a_          44 MILDAEKRGLLKNG---IVEPTSGNMGIAIAMIGA-----KRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKG  115 (293)
T ss_dssp             HHHHHHHTTCCTTC---EEEECSSHHHHHHHHHHH-----HHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHH
T ss_pred             HHHHHHHcCCCCcc---eEEecCcchhhHHHHhhh-----hccceeEeeccccccHHHeeccccCCcEEEEecCcchhhH
Confidence            46789999998876   799999999999999999     999999999 0                             


Q ss_pred             --------------------------ccccc------------------------------------------------C
Q 043034           51 --------------------------TRHLH------------------------------------------------H   56 (197)
Q Consensus        51 --------------------------~~h~~------------------------------------------------p   56 (197)
                                                ..|+.                                                |
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~~ii~vep  195 (293)
T d1o58a_         116 AVEKALEISRETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEP  195 (293)
T ss_dssp             HHHHHHHHHHHHCCBCCCTTTCHHHHHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHHHHGGGSEEEEEEE
T ss_pred             HHHHHHHHHhccCCEEeeeccccceeeeccccHHHhhhhhcCCCCCEEEEecCcchhHHHHHHHHHHHCCCCCeEEEEec
Confidence                                      00110                                                5


Q ss_pred             CCcceecccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCC
Q 043034           57 SEYVVLSHVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPEND  124 (197)
Q Consensus        57 ~~~~~~~~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~  124 (197)
                      .++..++++.++++.++|++            +|+++.|+|+|+++++|+|+++|||++|||||++++|++|+++++. +
T Consensus       196 ~~~~~l~~~~~~~~~i~~i~~~~~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~epssaa~~aa~~~~a~~~~-~  274 (293)
T d1o58a_         196 AKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLG-P  274 (293)
T ss_dssp             TTSCTTTTCCCCCCCCTTSCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHTSC-T
T ss_pred             CCCccccCCCcCCcccccCCCCccchhhhhhhCcEEEEECHHHHHHHHHHHHHHcCCEEeHHHHHHHHHHHHHHHHcC-C
Confidence            66667777777888899987            8999999999999999999999999999999999999999999874 6


Q ss_pred             CceEEEeecccccccceecccccCCCCCCccccccccceeeeccCCccccCc
Q 043034          125 RILIVVSLISYKLYFSFCINSLVNQSPCPFCSLHEACHQFLLPSGGERYLST  176 (197)
Q Consensus       125 g~~VVt~~~~~d~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~d~g~rYlst  176 (197)
                      +++||+                                  |+||+|+|||||
T Consensus       275 ~~~Vv~----------------------------------i~~d~g~kYls~  292 (293)
T d1o58a_         275 DARVVT----------------------------------VAPDHAERYLSI  292 (293)
T ss_dssp             TCCEEE----------------------------------EECBBGGGCTTT
T ss_pred             cCEEEE----------------------------------EECCCCcccccC
Confidence            889999                                  999999999998

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.88  E-value=7.8e-23  Score=172.25  Aligned_cols=124  Identities=41%  Similarity=0.577  Sum_probs=98.8

Q ss_pred             CHHHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE-e-----------------------------
Q 043034            1 MIKDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC-P-----------------------------   50 (197)
Q Consensus         1 mi~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~-p-----------------------------   50 (197)
                      +|.+|+++|++++|++ |+++||||+|+++|++|+     .+|+|++++ |                             
T Consensus        48 ~i~~a~~~g~~~~~~~-vv~assGn~g~a~A~~a~-----~~g~~~~i~~p~~~~~~k~~~~~~~ga~v~~~~~~~~~~~  121 (302)
T d1fcja_          48 MIWDAEKRGVLKPGVE-LVEPTNGNTGIALAYVAA-----ARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKG  121 (302)
T ss_dssp             HHHHHHHHTCCCTTCE-EEEECSSHHHHHHHHHHH-----HHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHH
T ss_pred             HHHHHHHcCCCCCCce-EEEeccccchhHHHHHHH-----HhccCCceEEeecCcHHHHHHHHHhccceEEeccccccch
Confidence            4788999999999998 999999999999999999     999999999 0                             


Q ss_pred             ----------------------------ccccc--------------------------------------C--------
Q 043034           51 ----------------------------TRHLH--------------------------------------H--------   56 (197)
Q Consensus        51 ----------------------------~~h~~--------------------------------------p--------   56 (197)
                                                  ..|+.                                      |        
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~Ei~e~~~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~~~~v~  201 (302)
T d1fcja_         122 AIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGTLTGVTRYIKGTKGKTDLITVA  201 (302)
T ss_dssp             HHHHHHHHHHTSTTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTTTCCTTCEEEE
T ss_pred             hhhHHHHHHhhhccceeccccccccchhHHHHhHHHHHHHHhcCCCCCEEEEcCCCccccccceeeeeeccccccccccc
Confidence                                        00000                                      1        


Q ss_pred             ---CCcceec------ccccccccccccc------------ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHH
Q 043034           57 ---SEYVVLS------HVVMGKHLIQASC------------HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASI  115 (197)
Q Consensus        57 ---~~~~~~~------~~~~~~~~ieGiG------------IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAl  115 (197)
                         ..+....      ......+.++|+|            +|+++.|+|+|+++++++|+++|||++|||||+++++|+
T Consensus       202 ~~~~~s~~~~~~~~~~~~~~~~~~~~gig~~~~~~~l~~~~~d~~~~Vsd~ea~~a~~~l~~~~gi~~epssaa~laaa~  281 (302)
T d1fcja_         202 VEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPGNLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAAL  281 (302)
T ss_dssp             EEETTSCHHHHHHTTCCCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_pred             cccccchhhhccccccccccCCceecccCCCcCchhhhcccCcEEEEECHHHHHHHHHHHHHHcCCEEcHHHHHHHHHHH
Confidence               1111000      0112345677776            899999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCceEEE
Q 043034          116 KVAKIPENDRILIVV  130 (197)
Q Consensus       116 klA~~~~~~g~~VVt  130 (197)
                      +++++...++++||+
T Consensus       282 ~l~~~~~~~~~~vvv  296 (302)
T d1fcja_         282 KLQEDESFTNKNIVV  296 (302)
T ss_dssp             HHTTSGGGTTCCEEE
T ss_pred             HHHHhcCCCcCeEEE
Confidence            998764446889999

>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: L-serine dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.2e-18  Score=145.07  Aligned_cols=66  Identities=21%  Similarity=0.206  Sum_probs=56.7

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhc-------CCCCCCceEEEeecccccccceecccccCC
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAK-------IPENDRILIVVSLISYKLYFSFCINSLVNQ  149 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~-------~~~~~g~~VVt~~~~~d~~~s~~~~~~~~~  149 (197)
                      +|+++.|+|+|+++++|+|+++|||++|||||++++|+++.+.       +...++++||+                   
T Consensus       237 ~~~~~~V~d~e~~~a~~~l~~~egi~~epssa~~~aal~~~~~~~~~~~~~~~~~~~~vVv-------------------  297 (319)
T d1p5ja_         237 PIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLVV-------------------  297 (319)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTTHHHHHHHTTSSCSSCSCEEE-------------------
T ss_pred             cceeeecCHHHHHHHHHHHHHHcCEEEeHHHHHHHHHHHHHHHHHHHHhccccCCCCCEEE-------------------
Confidence            7999999999999999999999999999999999999976542       22235678888                   


Q ss_pred             CCCCccccccccceeeeccCCccccCc
Q 043034          150 SPCPFCSLHEACHQFLLPSGGERYLST  176 (197)
Q Consensus       150 ~~~~~~~~~~~~~~~i~~d~g~rYlst  176 (197)
                                     +++++|..++++
T Consensus       298 ---------------v~~~G~n~d~~~  309 (319)
T d1p5ja_         298 ---------------IVCGGSNISLAQ  309 (319)
T ss_dssp             ---------------ECCBCSSCCHHH
T ss_pred             ---------------EEcCCCCCCHHH
Confidence                           888999988876

>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.75  E-value=3.8e-18  Score=145.20  Aligned_cols=54  Identities=24%  Similarity=0.240  Sum_probs=49.3

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt  130 (197)
                      .|.++.|+|+|+++++++|+++|||++|||||++++|+++++++.+ +++++||+
T Consensus       260 ~~~~~~V~d~ea~~a~~~l~~~eGi~v~pssg~alAa~~~~~~~~~~~~~~~VV~  314 (351)
T d1v7ca_         260 GGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFKLLREGRLEPESTVVL  314 (351)
T ss_dssp             TCEEEEECHHHHHHHHHHHHHHTCCCBCHHHHHHHHHHHHHHHTTCSCSSEEEEE
T ss_pred             CcEEEEEchHHHHHHHHHHHHHcCcEECHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence            6789999999999999999999999999999999999999998743 46788888

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=1.9e-19  Score=154.31  Aligned_cols=54  Identities=13%  Similarity=0.010  Sum_probs=50.1

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++|+|+++|||++|||||++++++++++++...++++||+
T Consensus       255 ~d~~~~V~d~e~~~a~~~la~~eGi~~eps~~~alAal~~~~~~~~~~g~~Vv~  308 (331)
T d1tdja1         255 LDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNIRGERLAH  308 (331)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             CCEEEEecHHHHHHHHHHHHHHcCcEEeHHHHHHHHHHHHHHhhccCCcCeEEE
Confidence            799999999999999999999999999999999999999988765446889999

>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.75  E-value=2.1e-18  Score=151.01  Aligned_cols=53  Identities=28%  Similarity=0.404  Sum_probs=49.3

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      .++.+.|+|+|+++++|+|+++|||++|+|||+++++|+++++++. ++++||+
T Consensus       316 ~~~~v~VtD~E~~~a~~~La~~EGI~~~~~sa~alA~a~kla~~~~-~~~~VV~  368 (386)
T d1v8za1         316 RAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMS-RDEIIIV  368 (386)
T ss_dssp             SEEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHTSC-TTCEEEE
T ss_pred             ceEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHHHHHHcC-CCCEEEE
Confidence            4578999999999999999999999999999999999999999874 7888888

>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.74  E-value=4.7e-18  Score=151.05  Aligned_cols=68  Identities=19%  Similarity=0.222  Sum_probs=59.6

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE-eecccccccceecc
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV-SLISYKLYFSFCIN  144 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt-~~~~~d~~~s~~~~  144 (197)
                      .++++.|+|+|+++++|+|+|.|||+++++|++++++|++++++...++++||+ +|||||||+..+.+
T Consensus       320 ~~~~~~vtD~Ea~~a~~~La~~EGI~~a~Esa~Ava~Ai~~a~~~~~~~~~VVv~lsG~G~kD~~~~~~  388 (390)
T d1qopb_         320 RADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTVHD  388 (390)
T ss_dssp             SSEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHHSTTSCEEEEEEECBBCGGGHHHHHH
T ss_pred             ceEEEEECHHHHHHHHHHHHHhcCCeecCchHHHHHHHHHHhhhcCCCCCEEEEEECCCCccCHHHHHh
Confidence            478999999999999999999999999999999999999999876446777766 59999999986654

>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=8.8e-17  Score=135.31  Aligned_cols=61  Identities=18%  Similarity=0.104  Sum_probs=50.5

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEEeecccccccc
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVVSLISYKLYFS  140 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt~~~~~d~~~s  140 (197)
                      +|+++.|+|+|+++++|+|+++|||++|||||++++|+++++++.   +++||++.-+|.-|||
T Consensus       249 ~d~~v~V~d~e~~~a~~~La~~eGi~vepssaa~lAa~~~~~~~~---~~~Vvvvl~GgN~d~~  309 (310)
T d1ve5a1         249 VDGILTVSEEALLEAERLLFTRTKQVVEPTGALPLAAVLEHGARL---PQTLALLLSGGNRDFS  309 (310)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHHTCBCCCGGGGHHHHHHHHHGGGS---CSEEEEEECBCCCCCC
T ss_pred             CCeEEEECHHHHHHHHHHHHHHcCCEEcHHHHHHHHHHHHhhHhc---CCCEEEEeCCCCccCC
Confidence            799999999999999999999999999999999999999988764   4566663212444444

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.64  E-value=2.2e-16  Score=133.22  Aligned_cols=52  Identities=19%  Similarity=0.119  Sum_probs=48.4

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +|+++.|+|+|+++++|+|+++|||++|||||++++|+++++++.  ++++||+
T Consensus       249 ~~~~~~v~d~e~~~a~~~la~~egi~~eps~a~~lAa~~~~~~~~--~~~~Vv~  300 (318)
T d1v71a1         249 VDDILTVSDEELIDCLKFYAARMKIVVEPTGCLSFAAARAMKEKL--KNKRIGI  300 (318)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHHTCCCCCGGGGHHHHHHHHTGGGG--TTCEEEE
T ss_pred             cCceeeECHHHHHHHHHHHHHHcCcEEeHHHHHHHHHHHHhHHHc--CCCcEEE
Confidence            899999999999999999999999999999999999999988775  5778888

>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.58  E-value=1.5e-15  Score=137.38  Aligned_cols=70  Identities=17%  Similarity=0.088  Sum_probs=54.8

Q ss_pred             eeEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCC-CCCceEEE-eecccccccceecccccC
Q 043034           78 EYCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPE-NDRILIVV-SLISYKLYFSFCINSLVN  148 (197)
Q Consensus        78 Deiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~-~~g~~VVt-~~~~~d~~~s~~~~~~~~  148 (197)
                      +.++.|+|+|++++++ ++++|||++|||||++++|++|+.++.. .++++||+ +++.|-||-.+.++.+.+
T Consensus       368 g~~~~VsDeei~~a~~-l~~~eGi~vePssA~alAal~kl~~~g~i~~~~~VVvl~Tg~glKf~~~~~~~~~~  439 (477)
T d1e5xa_         368 GIVEEATEEELMDAMA-QADSTGMFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSKIDYHSN  439 (477)
T ss_dssp             CEEEEECHHHHHHHHH-HHHHTTCCCCHHHHHHHHHHHHHHHTTSSCTTCCEEEEECBCGGGGHHHHHHHHTT
T ss_pred             ceEEecCHHHHHHHHH-HHHHCCcEEChHHHHHHHHHHHHHHhCCCCCCCcEEEEeCcCcccCHHHHHHhccc
Confidence            4578999999999876 6788999999999999999999998743 34555555 488888887766665443

>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Pseudomonas sp., strain ACP [TaxId: 306]

Probab=99.39  E-value=1.6e-12  Score=104.85  Aligned_cols=54  Identities=15%  Similarity=0.200  Sum_probs=47.1

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeeh-hHHHHHHHHHHhcCCC-CCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGIS-SDAAAAASIKVAKIPE-NDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~S-SGAaLAAAlklA~~~~-~~g~~VVt  130 (197)
                      +++++.|+|+|+++++++|+++|||+++|. ||++++++++++++.. .++++||+
T Consensus       264 ~~~~~~v~d~ei~~a~~~l~~~eGI~~eP~~s~~a~a~l~~~~~~~~~~~g~~Vv~  319 (338)
T d1tyza_         264 AGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLY  319 (338)
T ss_dssp             SCSBTTBCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCSCTTCEEEE
T ss_pred             ccceEEEChHHHHHHHHHHHHHhCCcCChHHHHHHHHHHHHHHhcCCCCCcCeEEE
Confidence            677889999999999999999999999995 7899999999887643 46788877

>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Yeast (Hansenula saturnus) [TaxId: 4906]

Probab=99.30  E-value=6.7e-12  Score=101.87  Aligned_cols=54  Identities=20%  Similarity=0.252  Sum_probs=47.0

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeeeh-hHHHHHHHHHHhcCCC-CCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGIS-SDAAAAASIKVAKIPE-NDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~S-SGAaLAAAlklA~~~~-~~g~~VVt  130 (197)
                      .+..+.|+|+|+++++++|+++|||+++|+ ||++++++.++.++.. .++++||+
T Consensus       265 ~~~~~~v~d~e~~~a~~~la~~eGI~veP~ys~~a~agl~~l~~~~~i~~~~~Vv~  320 (341)
T d1f2da_         265 AYPCYGVPNEGTIEAIRTCAEQEGVLTDPVYEGKSMQGLIALIKEDYFKPGANVLY  320 (341)
T ss_dssp             STTBTTBCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCSCTTCEEEE
T ss_pred             ceeEEEEChHHHHHHHHHHHHHhCcccChhhhHHHHHHHHHHHHcCCCCCcCeEEE
Confidence            666779999999999999999999999998 8999999999987643 46778877

>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.28  E-value=3.5e-12  Score=105.08  Aligned_cols=53  Identities=13%  Similarity=0.117  Sum_probs=46.6

Q ss_pred             ceeEEEcCcHHHHHHHHHHHHHhCCeeee-hhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           77 HEYCFQVSSEEAIETAQQLAHKEGLLVGI-SSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        77 IDeiv~VsDeEAi~aaR~LAr~EGI~VG~-SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      .+..+.|+|+|+++++++|+++|||+++| +||++++++++++++.. .+++||+
T Consensus       252 ~~~~~~v~d~e~~~a~~~l~~~eGI~~eP~~s~~a~~~l~~~~~~~~-~~~~vv~  305 (325)
T d1j0aa_         252 SFGEYGKITGEVAQIIRKVGTREGIILDPVYTGKAFYGLVDLARKGE-LGEKILF  305 (325)
T ss_dssp             STTSTTCCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTC-SCSEEEE
T ss_pred             eecceeechHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHHHHHcCC-CCCeEEE
Confidence            45567899999999999999999999999 69999999999998864 5778777

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.64  E-value=0.0059  Score=46.17  Aligned_cols=103  Identities=14%  Similarity=0.154  Sum_probs=73.6

Q ss_pred             HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcCc
Q 043034            6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSS   85 (197)
Q Consensus         6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~VsD   85 (197)
                      .+.+.++||++++|-+.+|..|.....+++     .+|.+++.+...-    +         .......+|.|+++.-++
T Consensus        22 ~~~~~v~~G~~VlV~ga~ggvG~~aiqlak-----~~Ga~vi~~~~~~----~---------~~~~~~~~Ga~~vi~~~~   83 (182)
T d1v3va2          22 LEVCGVKGGETVLVSAAAGAVGSVVGQIAK-----LKGCKVVGAAGSD----E---------KIAYLKQIGFDAAFNYKT   83 (182)
T ss_dssp             HTTTCCCSSCEEEESSTTSHHHHHHHHHHH-----HTTCEEEEEESSH----H---------HHHHHHHTTCSEEEETTS
T ss_pred             HHHhCCCCCCEEEEEeCCCchhHHHHHHHH-----ccCCEEEEeCCCH----H---------HHHHHHhhhhhhhccccc
Confidence            467899999998888888888888888888     9999999873210    0         112345667888888888


Q ss_pred             HHHHHHHHHHHHHhCC--eeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           86 EEAIETAQQLAHKEGL--LVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        86 eEAi~aaR~LAr~EGI--~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      ++-.+..+++....|+  .+...++-.+..+++..+.    +.+++.
T Consensus        84 ~~~~~~~~~~~~~~Gvd~v~D~vG~~~~~~~~~~l~~----~G~~v~  126 (182)
T d1v3va2          84 VNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKD----FGKIAI  126 (182)
T ss_dssp             CSCHHHHHHHHCTTCEEEEEESSCHHHHHHHGGGEEE----EEEEEE
T ss_pred             ccHHHHHHHHhhcCCCceeEEecCchhhhhhhhhccC----CCeEEe
Confidence            8888888877777776  5555666666655555543    345555

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.031  Score=41.55  Aligned_cols=103  Identities=13%  Similarity=0.253  Sum_probs=70.6

Q ss_pred             HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcCc
Q 043034            6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSS   85 (197)
Q Consensus         6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~VsD   85 (197)
                      .+++.++||++++|-.-+|..|.....+++     .+|.+++.+-..   |.          .......+|.|+++..++
T Consensus        21 ~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~-----~~G~~vi~~~~~---~~----------~~~~~~~~Ga~~vi~~~~   82 (174)
T d1yb5a2          21 IHSACVKAGESVLVHGASGGVGLAACQIAR-----AYGLKILGTAGT---EE----------GQKIVLQNGAHEVFNHRE   82 (174)
T ss_dssp             HTTSCCCTTCEEEEETCSSHHHHHHHHHHH-----HTTCEEEEEESS---HH----------HHHHHHHTTCSEEEETTS
T ss_pred             HHHhCCCCCCEEEEEecccccccccccccc-----ccCccccccccc---cc----------ccccccccCccccccccc
Confidence            367889999997776656766666666677     999998876311   10          012234577899998888


Q ss_pred             HHHHHHHHHHHHHhCC--eeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           86 EEAIETAQQLAHKEGL--LVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        86 eEAi~aaR~LAr~EGI--~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      ++..+..+.+...+|.  .+..+++..+-.+++..++    +.++|+
T Consensus        83 ~~~~~~i~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~----~G~iv~  125 (174)
T d1yb5a2          83 VNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSH----GGRVIV  125 (174)
T ss_dssp             TTHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHEEE----EEEEEE
T ss_pred             ccHHHHhhhhhccCCceEEeecccHHHHHHHHhccCC----CCEEEE
Confidence            8888887777655544  5566677777777777654    346666

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=94.14  E-value=0.02  Score=42.44  Aligned_cols=102  Identities=12%  Similarity=0.078  Sum_probs=70.1

Q ss_pred             HcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcCcH
Q 043034            7 DKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSSE   86 (197)
Q Consensus         7 ~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~VsDe   86 (197)
                      +.+.++||++++|=+-+|..|..+..+|+     .+|.+++.+-..             ....-.+..+|.|+++.-+++
T Consensus        22 ~~~~l~~g~~Vlv~ga~g~vG~~~iqlak-----~~Ga~Vi~~~~s-------------~~k~~~~~~lGa~~vi~~~~~   83 (179)
T d1qora2          22 KTYEIKPDEQFLFHAAAGGVGLIACQWAK-----ALGAKLIGTVGT-------------AQKAQSALKAGAWQVINYREE   83 (179)
T ss_dssp             TTSCCCTTCEEEESSTTBHHHHHHHHHHH-----HHTCEEEEEESS-------------HHHHHHHHHHTCSEEEETTTS
T ss_pred             HHhCCCCCCEEEEEccccccchHHHHHHH-----HhCCeEeecccc-------------hHHHHHHHhcCCeEEEECCCC
Confidence            56899999997787778888888888888     999998876211             000123456778889888888


Q ss_pred             HHHHHHHHHHHHhCC--eeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           87 EAIETAQQLAHKEGL--LVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        87 EAi~aaR~LAr~EGI--~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +..+..+++....|.  ++...++..+..+.+..+.    +.++++
T Consensus        84 d~~~~v~~~t~g~g~d~v~d~~g~~~~~~~~~~l~~----~G~~v~  125 (179)
T d1qora2          84 DLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQR----RGLMVS  125 (179)
T ss_dssp             CHHHHHHHHTTTCCEEEEEECSCGGGHHHHHHTEEE----EEEEEE
T ss_pred             CHHHHHHHHhCCCCeEEEEeCccHHHHHHHHHHHhc----CCeeee
Confidence            888888887654443  5555666666666665543    335555

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.66  E-value=0.057  Score=39.88  Aligned_cols=103  Identities=15%  Similarity=0.241  Sum_probs=67.1

Q ss_pred             HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcCc
Q 043034            6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVSS   85 (197)
Q Consensus         6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~VsD   85 (197)
                      .+.+.++||++++|=+-+|..|....-+++     .+|.+++.+-...             .....++.+|.|.++.-++
T Consensus        18 ~~~~~~~~g~~VlI~ga~g~vG~~~iqla~-----~~g~~vi~~~~~~-------------~~~~~l~~~Ga~~vi~~~~   79 (183)
T d1pqwa_          18 CEVGRLSPGERVLIHSATGGVGMAAVSIAK-----MIGARIYTTAGSD-------------AKREMLSRLGVEYVGDSRS   79 (183)
T ss_dssp             HTTSCCCTTCEEEETTTTSHHHHHHHHHHH-----HHTCEEEEEESSH-------------HHHHHHHTTCCSEEEETTC
T ss_pred             HHHhCCCCCCEEEEECCCCCcccccchhhc-----cccccceeeeccc-------------ccccccccccccccccCCc
Confidence            467889999996664555666666666666     9999998763211             0112345567888888888


Q ss_pred             HHHHHHHHHHHHHhCC--eeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           86 EEAIETAQQLAHKEGL--LVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        86 eEAi~aaR~LAr~EGI--~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      ++..+..+++...+|+  .+-..++-.+..+++..+.    +.++|+
T Consensus        80 ~~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~----~G~~v~  122 (183)
T d1pqwa_          80 VDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAP----GGRFIE  122 (183)
T ss_dssp             STHHHHHHHHTTTCCEEEEEECCCTHHHHHHHHTEEE----EEEEEE
T ss_pred             cCHHHHHHHHhCCCCEEEEEecccchHHHHHHHHhcC----CCEEEE
Confidence            8888888888766666  2333345566666766643    346666

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.35  E-value=0.065  Score=39.27  Aligned_cols=39  Identities=15%  Similarity=0.186  Sum_probs=31.9

Q ss_pred             HHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034            5 AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC   49 (197)
Q Consensus         5 ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~   49 (197)
                      |.++..++||++++| .-+|..|...+++++     .+|.+++.+
T Consensus        18 a~~~~~~~~g~~vlV-~G~G~vG~~~~~~ak-----~~Ga~vi~v   56 (170)
T d1e3ja2          18 ACRRAGVQLGTTVLV-IGAGPIGLVSVLAAK-----AYGAFVVCT   56 (170)
T ss_dssp             HHHHHTCCTTCEEEE-ECCSHHHHHHHHHHH-----HTTCEEEEE
T ss_pred             HHHHhCCCCCCEEEE-EcccccchhhHhhHh-----hhccccccc
Confidence            567778999999666 567888888888888     999998876

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.09  E-value=0.11  Score=37.99  Aligned_cols=104  Identities=16%  Similarity=0.131  Sum_probs=66.1

Q ss_pred             HHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEc
Q 043034            4 DAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQV   83 (197)
Q Consensus         4 ~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~V   83 (197)
                      .|.++..++||++++| .-+|..|...+++++     .+|++++.+-. +  |          ......+.+|.|+++..
T Consensus        18 ~al~~~~~~~g~~VlV-~GaG~vG~~~~~~ak-----~~G~~Vi~~~~-~--~----------~~~~~a~~~Ga~~~i~~   78 (166)
T d1llua2          18 KGLKQTNARPGQWVAI-SGIGGLGHVAVQYAR-----AMGLHVAAIDI-D--D----------AKLELARKLGASLTVNA   78 (166)
T ss_dssp             HHHHHHTCCTTCEEEE-ECCSHHHHHHHHHHH-----HTTCEEEEEES-C--H----------HHHHHHHHTTCSEEEET
T ss_pred             HHHHHhCCCCCCEEEE-eeccccHHHHHHHHH-----HcCCccceecc-h--h----------hHHHhhhccCccccccc
Confidence            3567788999999766 567999999888888     99999887621 1  0          00112345678888888


Q ss_pred             CcHHHHHHHHHHHHHh-CCeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           84 SSEEAIETAQQLAHKE-GLLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        84 sDeEAi~aaR~LAr~E-GI~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      ++++..+..+.....- ..+.-..++..+..+++.++    ++.++|.
T Consensus        79 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~----~~G~iv~  122 (166)
T d1llua2          79 RQEDPVEAIQRDIGGAHGVLVTAVSNSAFGQAIGMAR----RGGTIAL  122 (166)
T ss_dssp             TTSCHHHHHHHHHSSEEEEEECCSCHHHHHHHHTTEE----EEEEEEE
T ss_pred             cchhHHHHHHHhhcCCcccccccccchHHHHHHHHhc----CCcEEEE
Confidence            8887777666543211 12344444555555665554    3445655

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.39  E-value=0.14  Score=38.03  Aligned_cols=98  Identities=14%  Similarity=0.183  Sum_probs=56.5

Q ss_pred             HHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcC
Q 043034            5 AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVS   84 (197)
Q Consensus         5 ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~Vs   84 (197)
                      |.+++.++||++++|-..+|..|.....+++     .+|.+++.+-..   |+.          ....+.+|.|.++..+
T Consensus        19 al~~~~~~~g~~VlI~ga~G~vG~~aiqlak-----~~G~~vi~~~~~---~~~----------~~~~~~lGa~~~i~~~   80 (171)
T d1iz0a2          19 ALKRAQARPGEKVLVQAAAGALGTAAVQVAR-----AMGLRVLAAASR---PEK----------LALPLALGAEEAATYA   80 (171)
T ss_dssp             HHHHTTCCTTCEEEESSTTBHHHHHHHHHHH-----HTTCEEEEEESS---GGG----------SHHHHHTTCSEEEEGG
T ss_pred             HHHHhCCCCCCEEEEEeccccchhhhhhhhc-----cccccccccccc---ccc----------cccccccccceeeehh
Confidence            5677899999997776666766666666677     999998766211   111          1123456777777654


Q ss_pred             cHHHHHHHHHHHHHhC--CeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           85 SEEAIETAQQLAHKEG--LLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        85 DeEAi~aaR~LAr~EG--I~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      |..     .++...+|  +.+..+ |..+..+++..+    ++.++|.
T Consensus        81 ~~~-----~~~~~~~g~D~v~d~~-G~~~~~~~~~l~----~~G~~v~  118 (171)
T d1iz0a2          81 EVP-----ERAKAWGGLDLVLEVR-GKEVEESLGLLA----HGGRLVY  118 (171)
T ss_dssp             GHH-----HHHHHTTSEEEEEECS-CTTHHHHHTTEE----EEEEEEE
T ss_pred             hhh-----hhhhcccccccccccc-chhHHHHHHHHh----cCCcEEE
Confidence            422     22333345  344433 345555555544    2445665

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=90.30  E-value=0.26  Score=36.13  Aligned_cols=40  Identities=13%  Similarity=-0.026  Sum_probs=31.8

Q ss_pred             HHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034            4 DAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC   49 (197)
Q Consensus         4 ~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~   49 (197)
                      .|.+++.++||++++|-. .|..|.-.+.+++     .+|.+.+.+
T Consensus        21 ~al~~~~~~~G~~VlI~G-aG~vG~~a~qlak-----~~Ga~~i~~   60 (168)
T d1uufa2          21 SPLRHWQAGPGKKVGVVG-IGGLGHMGIKLAH-----AMGAHVVAF   60 (168)
T ss_dssp             HHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHH-----HTTCEEEEE
T ss_pred             HHHHHhCCCCCCEEEEec-cchHHHHHHHHhh-----cccccchhh
Confidence            466889999999977754 5777777777777     999998876

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.93  E-value=0.97  Score=32.84  Aligned_cols=105  Identities=15%  Similarity=0.188  Sum_probs=65.1

Q ss_pred             HHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEc
Q 043034            4 DAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQV   83 (197)
Q Consensus         4 ~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~V   83 (197)
                      .|.+++.++||++++| .-.|..|...++++.     .+|++-+++-..+-+            .-...+.+|.|.++..
T Consensus        17 ~a~~~~~~~~gd~VlI-~G~G~iG~~~~~~a~-----~~G~~~Vi~~d~~~~------------rl~~a~~~Ga~~~~~~   78 (171)
T d1pl8a2          17 HACRRGGVTLGHKVLV-CGAGPIGMVTLLVAK-----AMGAAQVVVTDLSAT------------RLSKAKEIGADLVLQI   78 (171)
T ss_dssp             HHHHHHTCCTTCEEEE-ECCSHHHHHHHHHHH-----HTTCSEEEEEESCHH------------HHHHHHHTTCSEEEEC
T ss_pred             HHHHHhCCCCCCEEEE-ECCCccHHHHHHHHH-----HcCCceEEeccCCHH------------HHHHHHHhCCcccccc
Confidence            3667889999999555 567999999999999     999954443222210            0012345667777777


Q ss_pred             CcHHHHHHHHHHHHHhC----CeeeehhHH-HHHHHHHHhcCCCCCCceEEE
Q 043034           84 SSEEAIETAQQLAHKEG----LLVGISSDA-AAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        84 sDeEAi~aaR~LAr~EG----I~VG~SSGA-aLAAAlklA~~~~~~g~~VVt  130 (197)
                      +++...+..+.+....|    +.+..+++. .+.-++++.+.    +.+++.
T Consensus        79 ~~~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~----gG~iv~  126 (171)
T d1pl8a2          79 SKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRS----GGTLVL  126 (171)
T ss_dssp             SSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCT----TCEEEE
T ss_pred             cccccccccccccccCCCCceEEEeccCCchhHHHHHHHhcC----CCEEEE
Confidence            66665555555555554    255655543 45556666653    445655

>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Escherichia coli [TaxId: 562]

Probab=89.79  E-value=0.67  Score=40.29  Aligned_cols=58  Identities=7%  Similarity=-0.028  Sum_probs=40.4

Q ss_pred             eEEEcCcHHHHHHHHHHHHHhCCeeeehhHHHHHHHHHHhcCCCCCCc-eEEEeecccccccc
Q 043034           79 YCFQVSSEEAIETAQQLAHKEGLLVGISSDAAAAASIKVAKIPENDRI-LIVVSLISYKLYFS  140 (197)
Q Consensus        79 eiv~VsDeEAi~aaR~LAr~EGI~VG~SSGAaLAAAlklA~~~~~~g~-~VVt~~~~~d~~~s  140 (197)
                      ....++|+|..+.++++.++.|+++.|.++++++|+.+...    ++. .|+..|...=|+-.
T Consensus       326 ~~~~~~dde~~~~i~~~~~~~gyi~DPHTAvg~~a~~~~~~----~~~~~V~LaTAHP~KF~d  384 (428)
T d1vb3a1         326 LGYAAVDDETTQQTMRELKELGYTSEPHAAVAYRALRDQLN----PGEYGLFLGTAHPAKFKE  384 (428)
T ss_dssp             SEEEECCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTCC----TTCEEEEEECBCGGGGHH
T ss_pred             cceeeccHHHHHHHHHHHHHcCceeCCcHHHHHHHHHHhhC----CCCCEEEEECcCchhCHH
Confidence            34566777888888888899999999999999988876432    333 44443544444444

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.62  E-value=0.16  Score=38.16  Aligned_cols=104  Identities=13%  Similarity=0.153  Sum_probs=72.1

Q ss_pred             HHcCCCCCC--CEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEc
Q 043034            6 EDKGLITPG--KSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQV   83 (197)
Q Consensus         6 e~~G~i~pG--~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~V   83 (197)
                      .+.+.++||  ++++|-+-+|..|.....+|+     .+|.+.++.-...  + +.        .......+|.|.++..
T Consensus        21 ~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak-----~~Ga~~vi~~~~~--~-e~--------~~~l~~~~gad~vi~~   84 (187)
T d1vj1a2          21 QEKGHISAGSNQTMVVSGAAGACGSLAGQIGH-----LLGCSRVVGICGT--Q-EK--------CLFLTSELGFDAAVNY   84 (187)
T ss_dssp             HHHSCCCTTSCCEEEESSTTSTTGGGHHHHHH-----HTTCSEEEEEESS--H-HH--------HHHHHHHSCCSEEEET
T ss_pred             HHHhCCCCCCCCEEEEECCCchhhHHHHHHHH-----HcCCcceecccch--H-HH--------HhhhhhcccceEEeec
Confidence            356789988  888888888999988888888     9999866542111  0 00        0112346778999999


Q ss_pred             CcHHHHHHHHHHHHHhCC--eeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           84 SSEEAIETAQQLAHKEGL--LVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        84 sDeEAi~aaR~LAr~EGI--~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      ++++..+..+++.. +|.  .+...+|..+..+++..+    ++.++|+
T Consensus        85 ~~~~~~~~~~~~~~-~GvDvv~D~vGg~~~~~~~~~l~----~~G~iv~  128 (187)
T d1vj1a2          85 KTGNVAEQLREACP-GGVDVYFDNVGGDISNTVISQMN----ENSHIIL  128 (187)
T ss_dssp             TSSCHHHHHHHHCT-TCEEEEEESSCHHHHHHHHTTEE----EEEEEEE
T ss_pred             cchhHHHHHHHHhc-cCceEEEecCCchhHHHHhhhcc----ccccEEE
Confidence            99998888888874 665  566667777666665554    3446665

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=89.38  E-value=0.3  Score=33.00  Aligned_cols=40  Identities=20%  Similarity=0.243  Sum_probs=34.9

Q ss_pred             HHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034            5 AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC   49 (197)
Q Consensus         5 ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~   49 (197)
                      ..+.+.++||++++|-.-||..|.-.-.++.     .+|++++.+
T Consensus        23 ~~~~~~~~~~~~vlI~gasGgVG~~aiQlak-----~~G~~Vi~~   62 (77)
T d1o8ca2          23 LEDAGVRPQDGEIVVTGASGGVGSTAVALLH-----KLGYQVVAV   62 (77)
T ss_dssp             HHHTTCCGGGCEEEESSTTSHHHHHHHHHHH-----HTTCCEEEE
T ss_pred             HHhhhhccCCCcEEEEeCCCcHHHHHHHHHH-----HcCCeEEEE
Confidence            4577889999998998888999988888889     999999876

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.28  E-value=0.31  Score=36.04  Aligned_cols=103  Identities=11%  Similarity=0.098  Sum_probs=66.8

Q ss_pred             HHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcC
Q 043034            5 AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVS   84 (197)
Q Consensus         5 ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~Vs   84 (197)
                      +.+++.++||++++| .-.|-.|...+++++     .+|++.+++-..+-    .        .....+.+|.|+++..+
T Consensus        20 ~~~~~~~~~g~~VlI-~G~G~iG~~~~~~ak-----~~g~~~v~~~~~~~----~--------k~~~a~~~Ga~~~i~~~   81 (174)
T d1f8fa2          20 CINALKVTPASSFVT-WGAGAVGLSALLAAK-----VCGASIIIAVDIVE----S--------RLELAKQLGATHVINSK   81 (174)
T ss_dssp             HHTTTCCCTTCEEEE-ESCSHHHHHHHHHHH-----HHTCSEEEEEESCH----H--------HHHHHHHHTCSEEEETT
T ss_pred             HHHhhCCCCCCEEEE-eCCCHHHhhhhhccc-----ccccceeeeeccHH----H--------HHHHHHHcCCeEEEeCC
Confidence            467889999999655 556877777888888     99998877632221    0        01123456788888888


Q ss_pred             cHHHHHHHHHHHHHhCC--eeeehh-HHHHHHHHHHhcCCCCCCceEEE
Q 043034           85 SEEAIETAQQLAHKEGL--LVGISS-DAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        85 DeEAi~aaR~LAr~EGI--~VG~SS-GAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      +++..+..+++.. .|.  .+..++ ...+.-++++.+.    +.+++.
T Consensus        82 ~~~~~~~i~~~t~-gg~D~vid~~G~~~~~~~~~~~~~~----~G~i~~  125 (174)
T d1f8fa2          82 TQDPVAAIKEITD-GGVNFALESTGSPEILKQGVDALGI----LGKIAV  125 (174)
T ss_dssp             TSCHHHHHHHHTT-SCEEEEEECSCCHHHHHHHHHTEEE----EEEEEE
T ss_pred             CcCHHHHHHHHcC-CCCcEEEEcCCcHHHHHHHHhcccC----ceEEEE
Confidence            8888888887753 243  344443 3455666776653    335555

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=88.90  E-value=0.18  Score=37.74  Aligned_cols=103  Identities=12%  Similarity=0.100  Sum_probs=66.2

Q ss_pred             HHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCc-EEEEecccccCCCcceeccccccccccccccceeEEEc
Q 043034            5 AEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK-SYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQV   83 (197)
Q Consensus         5 ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk-~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~V   83 (197)
                      |.+++.++||++++| .-.|-.|+..+.+++     .+|.+ ++.+ ..+    +        ......+.+|.|+++..
T Consensus        19 a~~~a~~~~g~~VlI-~GaG~vGl~~~q~ak-----~~Ga~~Vi~~-d~~----~--------~r~~~a~~lGa~~~i~~   79 (174)
T d1jqba2          19 GAELADIEMGSSVVV-IGIGAVGLMGIAGAK-----LRGAGRIIGV-GSR----P--------ICVEAAKFYGATDILNY   79 (174)
T ss_dssp             HHHHTTCCTTCCEEE-ECCSHHHHHHHHHHH-----TTTCSCEEEE-CCC----H--------HHHHHHHHHTCSEEECG
T ss_pred             HHHHhCCCCCCEEEE-EcCCcchhhhhhhhh-----cccccccccc-cch----h--------hhHHHHHhhCccccccc
Confidence            567889999999666 567877877777788     99984 5544 111    0        00122356777888888


Q ss_pred             CcHHHHHHHHHHHHHhCC--eeeehhH-HHHHHHHHHhcCCCCCCceEEE
Q 043034           84 SSEEAIETAQQLAHKEGL--LVGISSD-AAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        84 sDeEAi~aaR~LAr~EGI--~VG~SSG-AaLAAAlklA~~~~~~g~~VVt  130 (197)
                      ++++..+..+++-...|.  .+..+++ ..+..++++.++    +.++++
T Consensus        80 ~~~~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~----~G~iv~  125 (174)
T d1jqba2          80 KNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKP----GGIISN  125 (174)
T ss_dssp             GGSCHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEE----EEEEEE
T ss_pred             cchhHHHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhc----CCEEEE
Confidence            887777777777655553  4554543 345666777653    345555

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.59  E-value=0.47  Score=34.70  Aligned_cols=40  Identities=23%  Similarity=0.230  Sum_probs=32.4

Q ss_pred             HHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034            4 DAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC   49 (197)
Q Consensus         4 ~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~   49 (197)
                      .|.++..++||++++| .-.|..|...+.+++     .+|.+++.+
T Consensus        18 ~al~~~~~~~g~~vlI-~GaG~vG~~a~q~ak-----~~G~~vi~~   57 (168)
T d1piwa2          18 SPLVRNGCGPGKKVGI-VGLGGIGSMGTLISK-----AMGAETYVI   57 (168)
T ss_dssp             HHHHHTTCSTTCEEEE-ECCSHHHHHHHHHHH-----HHTCEEEEE
T ss_pred             HHHHHhCcCCCCEEEE-ECCCCcchhHHHHhh-----hcccccccc
Confidence            4667788999999555 667988888888888     999998876

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=86.98  E-value=0.36  Score=36.14  Aligned_cols=107  Identities=13%  Similarity=0.103  Sum_probs=61.8

Q ss_pred             HHcCCCCCCCEEEEe-eCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEcC
Q 043034            6 EDKGLITPGKSILIE-ITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVS   84 (197)
Q Consensus         6 e~~G~i~pG~t~Iie-~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~Vs   84 (197)
                      .+.+.++||+++||- +-+|..|.....+|+     .+|.+++.+-..   +.+..-      ....++.+|.|.++.-+
T Consensus        21 ~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk-----~~Ga~vI~~v~~---~~~~~~------~~~~~~~lGad~vi~~~   86 (189)
T d1gu7a2          21 THYVKLTPGKDWFIQNGGTSAVGKYASQIGK-----LLNFNSISVIRD---RPNLDE------VVASLKELGATQVITED   86 (189)
T ss_dssp             HSSSCCCTTTCEEEESCTTSHHHHHHHHHHH-----HHTCEEEEEECC---CTTHHH------HHHHHHHHTCSEEEEHH
T ss_pred             HHHhCCCCCCEEEEEeCCCchHHHHHHHHHh-----hcCCeEEEEEec---ccccch------HHhhhhhccccEEEecc
Confidence            456899999875664 567777777777777     999999877321   111100      01124567778877654


Q ss_pred             cH---HHHHHHHHHHHHhC----CeeeehhHHHHHHHHHHhcCCCCCCceEEE
Q 043034           85 SE---EAIETAQQLAHKEG----LLVGISSDAAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        85 De---EAi~aaR~LAr~EG----I~VG~SSGAaLAAAlklA~~~~~~g~~VVt  130 (197)
                      ++   +..+..+++.+..|    +.+-..+|-.+..+++..+    ++.++|+
T Consensus        87 ~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~~~~~~~~~l~----~~G~~v~  135 (189)
T d1gu7a2          87 QNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLN----NNGLMLT  135 (189)
T ss_dssp             HHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHHHHHHHHTSC----TTCEEEE
T ss_pred             ccchhHHHHHHHHHHhhccCCceEEEECCCcchhhhhhhhhc----CCcEEEE
Confidence            33   33344455554444    2444455555555555543    3456666

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=85.96  E-value=0.38  Score=37.36  Aligned_cols=37  Identities=22%  Similarity=0.257  Sum_probs=28.2

Q ss_pred             CCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034            9 GLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC   49 (197)
Q Consensus         9 G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~   49 (197)
                      |.|+ |+++||=..||+.|||.|.+-+   ++..|++++++
T Consensus         1 g~L~-gK~alITGaag~~GIG~AiA~~---la~~Ga~V~i~   37 (274)
T d2pd4a1           1 GFLK-GKKGLIVGVANNKSIAYGIAQS---CFNQGATLAFT   37 (274)
T ss_dssp             CTTT-TCEEEEECCCSTTSHHHHHHHH---HHTTTCEEEEE
T ss_pred             CcCC-CCEEEEECCCCCcHHHHHHHHH---HHHCCCEEEEE
Confidence            5565 7776776666777999986555   77999999998

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=85.77  E-value=0.68  Score=33.53  Aligned_cols=106  Identities=11%  Similarity=0.137  Sum_probs=67.2

Q ss_pred             HHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEEecccccCCCcceeccccccccccccccceeEEEc
Q 043034            4 DAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQV   83 (197)
Q Consensus         4 ~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~V   83 (197)
                      .|.++..++||++++|=.-+|..|+..+++++     .+|++.+++-...-            ......+-+|.|.++.-
T Consensus        18 ~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~-----~~g~~~V~~~~~~~------------~~~~~~~~~Ga~~~i~~   80 (170)
T d1jvba2          18 RAVRKASLDPTKTLLVVGAGGGLGTMAVQIAK-----AVSGATIIGVDVRE------------EAVEAAKRAGADYVINA   80 (170)
T ss_dssp             HHHHHTTCCTTCEEEEETTTSHHHHHHHHHHH-----HHTCCEEEEEESSH------------HHHHHHHHHTCSEEEET
T ss_pred             HHHHHhCCCCCCEEEEEeccccceeeeeeccc-----ccccccccccccch------------hhHHHHHHcCCceeecc
Confidence            36778899999997776667888888888888     89986555422110            01122345677888888


Q ss_pred             CcHHHHHHHHHHHHHhC--CeeeehhHH-HHHHHHHHhcCCCCCCceEEE
Q 043034           84 SSEEAIETAQQLAHKEG--LLVGISSDA-AAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        84 sDeEAi~aaR~LAr~EG--I~VG~SSGA-aLAAAlklA~~~~~~g~~VVt  130 (197)
                      ++++..+..+++....+  +.+..+++. .+..+++..+    ++.++|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~----~~G~iv~  126 (170)
T d1jvba2          81 SMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALA----KQGKYVM  126 (170)
T ss_dssp             TTSCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEE----EEEEEEE
T ss_pred             CCcCHHHHHHHHhhcccchhhhcccccchHHHhhhhhcc----cCCEEEE
Confidence            88888777777765444  445545443 3444454443    3456666

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=84.90  E-value=0.56  Score=35.12  Aligned_cols=42  Identities=21%  Similarity=0.241  Sum_probs=34.8

Q ss_pred             HHHHHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034            3 KDAEDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC   49 (197)
Q Consensus         3 ~~ae~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~   49 (197)
                      ...++.|.+++|++++|-+-||.-|+...-+++     .+|++++.+
T Consensus        13 ~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk-----~~Ga~Viat   54 (167)
T d1tt7a2          13 HRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLN-----KRGYDVVAS   54 (167)
T ss_dssp             HHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHH-----HHTCCEEEE
T ss_pred             HHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHH-----HcCCceEEE
Confidence            345678989889877998888888888777888     999999987

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=81.84  E-value=0.75  Score=35.40  Aligned_cols=36  Identities=22%  Similarity=0.254  Sum_probs=26.7

Q ss_pred             CCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCc-EEEE
Q 043034            9 GLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK-SYHC   49 (197)
Q Consensus         9 G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk-~~~~   49 (197)
                      -+.+|++|+||  |.|+.|||++++=.   ++.+|++ ++++
T Consensus         4 ~~~~p~gt~lV--TGgs~GIG~a~a~~---la~~Ga~~vvl~   40 (259)
T d2fr1a1           4 DEWKPTGTVLV--TGGTGGVGGQIARW---LARRGAPHLLLV   40 (259)
T ss_dssp             CCCCCCSEEEE--ETTTSHHHHHHHHH---HHHHTCSEEEEE
T ss_pred             cccCCcCEEEE--ECCCcHHHHHHHHH---HHHCCCCEEEEE
Confidence            45789998666  77888888887644   5689996 5555

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.84  E-value=0.69  Score=36.32  Aligned_cols=32  Identities=25%  Similarity=0.366  Sum_probs=25.6

Q ss_pred             CCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCcEEEE
Q 043034           13 PGKSILIEITSSNTGIGLAFISAVRIAAVRGYKSYHC   49 (197)
Q Consensus        13 pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk~~~~   49 (197)
                      .|+++||  |.|+.|||.|+.=.   ++.+|++++++
T Consensus        13 ~GK~alI--TGassGIG~aiA~~---la~~G~~Vil~   44 (269)
T d1xu9a_          13 QGKKVIV--TGASKGIGREMAYH---LAKMGAHVVVT   44 (269)
T ss_dssp             TTCEEEE--SSCSSHHHHHHHHH---HHHTTCEEEEE
T ss_pred             CCCEEEE--eCCCcHHHHHHHHH---HHHCCCEEEEE
Confidence            4677555  88889999887654   67899999998

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=81.39  E-value=0.99  Score=33.11  Aligned_cols=102  Identities=12%  Similarity=0.104  Sum_probs=60.6

Q ss_pred             HHcCCCCCCCEEEEeeCCChHHHHHHHHHhhhHHhhcCCc-EEEEecccccCCCcceeccccccccccccccceeEEEcC
Q 043034            6 EDKGLITPGKSILIEITSSNTGIGLAFISAVRIAAVRGYK-SYHCPTRHLHHSEYVVLSHVVMGKHLIQASCHEYCFQVS   84 (197)
Q Consensus         6 e~~G~i~pG~t~Iie~tsgntgi~lA~iaa~~~~~~~Gyk-~~~~p~~h~~p~~~~~~~~~~~~~~~ieGiGIDeiv~Vs   84 (197)
                      .+.+.++||++++|=. .|..|.....++.     .+|++ ++.+ ..+    +.        .....+.+|.|.++..+
T Consensus        21 ~~~~~~~~G~~VlV~G-aG~iG~~~~~~ak-----~~Ga~~Vi~~-~~~----~~--------~~~~a~~lGa~~vi~~~   81 (182)
T d1vj0a2          21 DEYPESFAGKTVVIQG-AGPLGLFGVVIAR-----SLGAENVIVI-AGS----PN--------RLKLAEEIGADLTLNRR   81 (182)
T ss_dssp             HTCSSCCBTCEEEEEC-CSHHHHHHHHHHH-----HTTBSEEEEE-ESC----HH--------HHHHHHHTTCSEEEETT
T ss_pred             HHHhCCCCCCEEEEEC-CCccchhheeccc-----cccccccccc-ccc----cc--------cccccccccceEEEecc
Confidence            3568999999966654 5888888888888     99984 5554 111    00        01223456678888777


Q ss_pred             cHHHHHHHHHHHHH---hC--CeeeehhH-HHHHHHHHHhcCCCCCCceEEE
Q 043034           85 SEEAIETAQQLAHK---EG--LLVGISSD-AAAAASIKVAKIPENDRILIVV  130 (197)
Q Consensus        85 DeEAi~aaR~LAr~---EG--I~VG~SSG-AaLAAAlklA~~~~~~g~~VVt  130 (197)
                      ++...+..+.+.+.   .|  +.+..+++ ..+..+++.++.    +.++|.
T Consensus        82 ~~~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~----~G~iv~  129 (182)
T d1vj0a2          82 ETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRR----GGFYSV  129 (182)
T ss_dssp             TSCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEE----EEEEEE
T ss_pred             ccchHHHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcC----CCEEEE
Confidence            66555554444332   22  34555554 345666777654    345555