Citrus Sinensis ID: 043071


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
MVQSADKPKAVAKLNCPSAANLANLLPTGTVLAYQALMPSLSNNGTCLAAHKYLSIVALAGCSIVCFLSSFTDSYYSSKGKLYYGIATTTGLHIFNKKDSEDEGEKADNNIEDGDKGTEKEGVCLDTYKIRWIDFVHAFTSLLVFLVFATTNSDARRCFFPHPGPNTNVLLMHLPILVGVLQASYSCFSPLIGE
ccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHEEEccccEEcccccEEEEEEEccEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEcccccccHHHHHHHHcHHHHHHHHHEEEEcccccc
ccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHcHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccEEEEcccccccccccccccccccccccccccccHHHHcEcHHHHHHHHHHHHHHHHHHHHccccHEcccccccHHHHHHHHHccHHHHHHHHHHHHHcHcccc
mvqsadkpkavaklncpsaanlanllptgTVLAYQAlmpslsnngtclaAHKYLSIVALAGCSIVCFLSsftdsyysskgklyyGIATTtglhifnkkdsedegekadnniedgdkgtekegvcldtykirWIDFVHAFTSLLVFLVFATtnsdarrcffphpgpntnvLLMHLPILVGVLQAsyscfsplige
mvqsadkpkavAKLNCPSAANLANLLPTGTVLAYQALMPSLSNNGTCLAAHKYLSIVALAGCSIVCFLSSFTDSYYSSKGKLYYGIATTTGLHIFnkkdsedegekadnniedgdkgtekegvcLDTYKIRWIDFVHAFTSLLVFLVFATTNSDARRCFFPHPGPNTNVLLMHLPILVGVLQASYSCFSPLIGE
MVQSADKPKAVAKLNCPSAANLANLLPTGTVLAYQALMPSLSNNGTCLAAHKYLSIVALAGCSIVCFLSSFTDsyysskgklyygIATTTGLHIFNKKDSEDEGEKADNNIEDGDKGTEKEGVCLDTYKIRWIDFVHAFTSLLVFLVFATTNSDARRCFFPHPGPNTNVLLMHLPILVGVLQASYSCFSPLIGE
*************LNCPSAANLANLLPTGTVLAYQALMPSLSNNGTCLAAHKYLSIVALAGCSIVCFLSSFTDSYYSSKGKLYYGIATTTGLHIFN*************************GVCLDTYKIRWIDFVHAFTSLLVFLVFATTNSDARRCFFPHPGPNTNVLLMHLPILVGVLQASYSCFSPL***
*****************SAANLANLLPTGTVLAYQALMPSLSNNGTCLAAHKYLSIVALAGCSIVCFLSSFTDSYYSSKGKLYYGIATTTGLHIFNKK*************************CLDTYKIRWIDFVHAFTSLLVFLVFATTNSDARRCFFPHPGPNTNVLLMHLPILVGVLQASYSCFSPLIGE
**********VAKLNCPSAANLANLLPTGTVLAYQALMPSLSNNGTCLAAHKYLSIVALAGCSIVCFLSSFTDSYYSSKGKLYYGIATTTGLHIFNKK**********NNIEDGDKGTEKEGVCLDTYKIRWIDFVHAFTSLLVFLVFATTNSDARRCFFPHPGPNTNVLLMHLPILVGVLQASYSCFSPLIGE
********KAVAKLNCPSAANLANLLPTGTVLAYQALMPSLSNNGTCLAAHKYLSIVALAGCSIVCFLSSFTDSYYSSKGKLYYGIATTTGLHIFNKKD*********************EGVCLDTYKIRWIDFVHAFTSLLVFLVFATTNSDARRCFFPHPGPNTNVLLMHLPILVGVLQASYSCFSPLIGE
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoo
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHi
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHii
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MVQSADKPKAVAKLNCPSAANLANLLPTGTVLAYQALMPSLSNNGTCLAAHKYLSIVALAGCSIVCFLSSFTDSYYSSKGKLYYGIATTTGLHIFNKKDSEDEGEKADNNIEDGDKGTEKEGVCLDTYKIRWIDFVHAFTSLLVFLVFATTNSDARRCFFPHPGPNTNVLLMHLPILVGVLQASYSCFSPLIGE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query194
255542524232 conserved hypothetical protein [Ricinus 0.850 0.711 0.488 6e-40
224125366200 predicted protein [Populus trichocarpa] 0.798 0.775 0.524 1e-38
414881788252 TPA: hypothetical protein ZEAMMB73_81764 0.845 0.650 0.421 4e-31
242053571253 hypothetical protein SORBIDRAFT_03g02742 0.871 0.667 0.410 1e-30
15240911191 uncharacterized protein [Arabidopsis tha 0.721 0.732 0.470 1e-29
116830645192 unknown [Arabidopsis thaliana] 0.721 0.729 0.470 1e-29
413946882227 hypothetical protein ZEAMMB73_395130 [Ze 0.860 0.735 0.422 5e-29
297812985191 hypothetical protein ARALYDRAFT_910848 [ 0.711 0.722 0.458 1e-27
115471671262 Os07g0407900 [Oryza sativa Japonica Grou 0.835 0.618 0.407 1e-27
115436700240 Os01g0389700 [Oryza sativa Japonica Grou 0.819 0.662 0.409 1e-26
>gi|255542524|ref|XP_002512325.1| conserved hypothetical protein [Ricinus communis] gi|223548286|gb|EEF49777.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  169 bits (427), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 86/176 (48%), Positives = 118/176 (67%), Gaps = 11/176 (6%)

Query: 8   PKAVAKLNCPSAANLANLLPTGTVLAYQALMPSLSNNGTCLAAHKYLSIVALAGCSIVCF 67
           P    K    +AANLANLLPTGTVLA++AL+PS SN+G C AA++YL++  +  CS+VCF
Sbjct: 34  PMGRGKTLASTAANLANLLPTGTVLAFEALVPSFSNDGECFAANRYLTLGVIICCSLVCF 93

Query: 68  LSSFTDSYYSSKGKLYYGIATTTGLHIFNKKDSEDEGEKADNNIEDGDKGTEKEGVCLDT 127
           LSSFTDS+    GK+YYGIAT  GL++FN  D  D         E+  KG +K       
Sbjct: 94  LSSFTDSFVGHDGKIYYGIATFKGLYVFNDCDCSDGCG------EEEIKGNKKT-----N 142

Query: 128 YKIRWIDFVHAFTSLLVFLVFATTNSDARRCFFPHPGPNTNVLLMHLPILVGVLQA 183
           Y+I  IDF+HAF+SL+VFLVFA ++S+ + CFF   GPN   ++M+LP+ +G+  +
Sbjct: 143 YRITLIDFIHAFSSLIVFLVFAISSSNVQECFFSKAGPNEKQIIMNLPLGIGLFSS 198




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125366|ref|XP_002319568.1| predicted protein [Populus trichocarpa] gi|222857944|gb|EEE95491.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|414881788|tpg|DAA58919.1| TPA: hypothetical protein ZEAMMB73_817646 [Zea mays] Back     alignment and taxonomy information
>gi|242053571|ref|XP_002455931.1| hypothetical protein SORBIDRAFT_03g027420 [Sorghum bicolor] gi|241927906|gb|EES01051.1| hypothetical protein SORBIDRAFT_03g027420 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|15240911|ref|NP_198089.1| uncharacterized protein [Arabidopsis thaliana] gi|91805667|gb|ABE65562.1| hypothetical protein At5g27370 [Arabidopsis thaliana] gi|332006294|gb|AED93677.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|116830645|gb|ABK28280.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|413946882|gb|AFW79531.1| hypothetical protein ZEAMMB73_395130 [Zea mays] Back     alignment and taxonomy information
>gi|297812985|ref|XP_002874376.1| hypothetical protein ARALYDRAFT_910848 [Arabidopsis lyrata subsp. lyrata] gi|297320213|gb|EFH50635.1| hypothetical protein ARALYDRAFT_910848 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|115471671|ref|NP_001059434.1| Os07g0407900 [Oryza sativa Japonica Group] gi|50510212|dbj|BAD31380.1| unknown protein [Oryza sativa Japonica Group] gi|113610970|dbj|BAF21348.1| Os07g0407900 [Oryza sativa Japonica Group] gi|125599914|gb|EAZ39490.1| hypothetical protein OsJ_23923 [Oryza sativa Japonica Group] gi|215766327|dbj|BAG98555.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|115436700|ref|NP_001043108.1| Os01g0389700 [Oryza sativa Japonica Group] gi|55297216|dbj|BAD68980.1| unknown protein [Oryza sativa Japonica Group] gi|113532639|dbj|BAF05022.1| Os01g0389700 [Oryza sativa Japonica Group] gi|125570498|gb|EAZ12013.1| hypothetical protein OsJ_01895 [Oryza sativa Japonica Group] gi|215766178|dbj|BAG98406.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query194
TAIR|locus:2146380191 AT5G27370 "AT5G27370" [Arabido 0.721 0.732 0.424 1.1e-25
TAIR|locus:2135952213 AT4G24310 "AT4G24310" [Arabido 0.489 0.446 0.442 3.9e-24
TAIR|locus:505006493213 AT4G18425 "AT4G18425" [Arabido 0.448 0.408 0.397 1.8e-22
TAIR|locus:2161393214 AT5G46090 "AT5G46090" [Arabido 0.448 0.406 0.386 6e-22
TAIR|locus:2089865184 DMP2 "AT3G21550" [Arabidopsis 0.432 0.456 0.380 4.1e-21
TAIR|locus:2076894219 AT3G02430 "AT3G02430" [Arabido 0.448 0.397 0.402 1.1e-20
TAIR|locus:2089915207 DMP1 "AT3G21520" [Arabidopsis 0.422 0.396 0.365 2.7e-18
TAIR|locus:1009023066243 AT1G09157 "AT1G09157" [Arabido 0.845 0.674 0.298 7.7e-16
TAIR|locus:2164850244 DAU2 "AT5G39650" [Arabidopsis 0.783 0.622 0.310 1.6e-15
TAIR|locus:504955516165 DMP7 "AT4G28485" [Arabidopsis 0.335 0.393 0.352 3.3e-08
TAIR|locus:2146380 AT5G27370 "AT5G27370" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 65/153 (42%), Positives = 85/153 (55%)

Query:    17 PSAANLANLLPTGTVLAYQALMPSLSNNGTC--LAAHKYLSIVALAGCSIVCFLSSFTDX 74
             PSA N ANLLPTGT L ++ L+PS SN G C     +K L+I  ++ C+  CF SSFTD 
Sbjct:    10 PSAGNFANLLPTGTALIFETLLPSFSNGGECNNKPVNKLLTITLISFCAAACFFSSFTDS 69

Query:    75 XXXXXXXXXXXIATTTGLHIFNKKDSEDEGEKADNNIEDGDKGTEKEGVCLDTYKIRWID 134
                        IAT+ GLHI N  D  DEG   ++ +   DK         + YK+ ++D
Sbjct:    70 YVGQDGRIYYGIATSNGLHILN--DYPDEGYDPESGLT-ADKR--------ERYKLSFVD 118

Query:   135 FVHAFTSLLVFLVFATTNSDARRCFFPHPGPNT 167
             FVHAF S++VFL  A  +SD RRC  P    N+
Sbjct:   119 FVHAFVSVIVFLALAVESSDFRRCLLPEDDENS 151




GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
TAIR|locus:2135952 AT4G24310 "AT4G24310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006493 AT4G18425 "AT4G18425" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161393 AT5G46090 "AT5G46090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089865 DMP2 "AT3G21550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076894 AT3G02430 "AT3G02430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089915 DMP1 "AT3G21520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1009023066 AT1G09157 "AT1G09157" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164850 DAU2 "AT5G39650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955516 DMP7 "AT4G28485" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query194
pfam05078169 pfam05078, DUF679, Protein of unknown function (DU 2e-62
>gnl|CDD|147322 pfam05078, DUF679, Protein of unknown function (DUF679) Back     alignment and domain information
 Score =  190 bits (485), Expect = 2e-62
 Identities = 76/165 (46%), Positives = 102/165 (61%), Gaps = 14/165 (8%)

Query: 17  PSAANLANLLPTGTVLAYQALMPSLSNNGTCLAAHKYLSIVALAGCSIVCFLSSFTDSYY 76
            S ANLA LLPTGTVLA+QAL PS +N+G C AA++ L+   +A C+  CF  SFTDSY 
Sbjct: 2   SSTANLAKLLPTGTVLAFQALSPSFTNHGECDAANRVLTAALVALCAASCFFFSFTDSYV 61

Query: 77  SSKGKLYYGIATTTGLHIFNKKDSEDEGEKADNNIEDGDKGTEKEGVCLDTYKIRWIDFV 136
              GK+YYG+AT  GL +FN               E G  G +     L  Y++R++DFV
Sbjct: 62  GPDGKVYYGVATPRGLWVFNY--------------EGGRGGGDLPQRDLSRYRLRFLDFV 107

Query: 137 HAFTSLLVFLVFATTNSDARRCFFPHPGPNTNVLLMHLPILVGVL 181
           HAF S+LVFL  A ++++   CF+P PG  T  +L +LP+ VGV+
Sbjct: 108 HAFFSVLVFLAVALSDANVVSCFYPGPGEETKEVLTNLPLGVGVV 152


This family contains several uncharacterized plant proteins. Length = 169

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 194
PF05078170 DUF679: Protein of unknown function (DUF679); Inte 100.0
>PF05078 DUF679: Protein of unknown function (DUF679); InterPro: IPR007770 This family contains uncharacterised plant proteins of unknown function Back     alignment and domain information
Probab=100.00  E-value=1.1e-81  Score=521.80  Aligned_cols=166  Identities=48%  Similarity=0.798  Sum_probs=157.5

Q ss_pred             hhhHHHHhhhCchhHHHHHHhhccccccCCccccchhHHHHHHHHHhhhhhhcccccceeecCCCcEEEEEEeccceeee
Q 043071           16 CPSAANLANLLPTGTVLAYQALMPSLSNNGTCLAAHKYLSIVALAGCSIVCFLSSFTDSYYSSKGKLYYGIATTTGLHIF   95 (194)
Q Consensus        16 lssta~La~LLPTGTvLaFQ~LsP~fTN~G~C~~~nr~Lt~~Ll~~ca~sCff~sFTDS~~~~dGkvyYG~aT~~Gl~~f   95 (194)
                      |+++|||+||||||||||||+|+|+|||||+|+++|||||++||++||+||||+||||||+|+|||+|||+||+||||+|
T Consensus         1 ls~ta~La~LLPTGTvlaFq~L~P~~Tn~G~C~~~nr~lt~~Ll~lca~sC~f~sFTDS~~~~dGkvyYG~aT~~Gl~~f   80 (170)
T PF05078_consen    1 LSSTANLAKLLPTGTVLAFQILSPSFTNNGECDTANRWLTAALLALCAASCFFFSFTDSFRGSDGKVYYGFATPRGLWVF   80 (170)
T ss_pred             CccHHHHHHhCcchHHHHHHHhhhhcccCCccCcchHHHHHHHHHHHHHHHHHeeecceeECCCCCEEEEEEEcccceec
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCccccccccCCCCCCCCCCCCCCCcccccceeeehhhhHHHHHHHHHHHHhccCCCceeeCCCCCCCHHHHHHHhh
Q 043071           96 NKKDSEDEGEKADNNIEDGDKGTEKEGVCLDTYKIRWIDFVHAFTSLLVFLVFATTNSDARRCFFPHPGPNTNVLLMHLP  175 (194)
Q Consensus        96 ~~~~~~~~~e~~~~~~~~g~~~~~~~~~~~~~yrLr~~DfvHA~lS~~VF~avAl~D~~v~~CffP~~~~~~~ell~~lP  175 (194)
                      |.+++++             ++.+.++++++||||||+|||||++|++||++||++|+|||+||||.+++++||+|+++|
T Consensus        81 ~~~~~~~-------------g~~~~~~~~~~~yrlr~~DfvHA~lS~~VF~aval~d~~v~~Cf~P~~~~~~~~~l~~lP  147 (170)
T PF05078_consen   81 NYPGPEE-------------GGGELKPRDLSKYRLRFIDFVHAFLSVVVFLAVALSDQNVVSCFFPSPSSETKEVLMNLP  147 (170)
T ss_pred             CCCCccc-------------cccCCCccccccceEehhhhhHHHHHHHHHHHhheeCCCcceecCCCCchhHHHHHHHhH
Confidence            9875532             123456789999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhhheeeecccCCC
Q 043071          176 ILVGVLQASYSCFSPLIGE  194 (194)
Q Consensus       176 l~vG~l~S~vF~iFPt~~~  194 (194)
                      ++||++||+|||+|||+|.
T Consensus       148 ~~vG~~~S~vF~~FPt~R~  166 (170)
T PF05078_consen  148 LGVGVLCSMVFMIFPTTRH  166 (170)
T ss_pred             HHHHHhHeeEEEECCCCCC
Confidence            9999999999999999984




Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00