Citrus Sinensis ID: 043096

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
MAVNSSTHRALPLNRPVQLRFRLSPAFFYNRTSSRPVFSTDAPNLRLVSVRARKPGSDGFGYKKSVNLTDSEAPIGSSSSSTSSAIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKVLDEFFLSTAGKI
ccccccccccccccccccccccccHHHHHHccccccccccccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccc
cccccccccccccccccccccccccHHEEccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccHccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHccccc
mavnssthralplnrpvqlrfrlspaffynrtssrpvfstdapnlrlvsvrarkpgsdgfgykksvnltdseapigssssstssAIDFLTLCHSLKttkrkgwinhgikgpesIADHMYRMALMALIagdipgvdreRCIKIAIVHDIAEAivgditpsdgvpkEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKVLDEFFLSTAGKI
mavnssthralplnrpvqlrFRLSPAFFynrtssrpvfstdapnlrlvsvrarkpgsdgfgykksvnltdseapigssssstssaIDFLTLCHSLKttkrkgwinhgiKGPESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIaeaivgditpsdgvPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKVLDEFFLSTAGKI
MAVNSSTHRALPLNRPVQLRFRLSPAFFYNRTSSRPVFSTDAPNLRLVSVRARKPGSDGFGYKKSVNLTDSEAPIGssssstssAIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKVLDEFFLSTAGKI
***************PVQLRFRLSPAFFYNRT*****************************************************IDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAIVGDIT******************NEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKVLDEFFL******
*************NRP**********************************************************************DFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKVLDEFFLSTAGKI
**********LPLNRPVQLRFRLSPAFFYNRTSSRPVFSTDAPNLRLVSVRARKPGSDGFGYKKSVNLTDS************SAIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKVLDEFFLSTAGKI
*******HRALPLNRPVQLRFRLSPAFFYNRTSSRPVFSTDAPNLRLVS*RAR****************************TSSAIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKVLDEFFLSTAG**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAVNSSTHRALPLNRPVQLRFRLSPAFFYNRTSSRPVFSTDAPNLRLVSVRARKPGSDGFGYKKSVNLTDSEAPIGSSSSSTSSAIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKVLDEFFLSTAGKI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query243 2.2.26 [Sep-21-2011]
Q1LUI2200 HD domain-containing prot yes no 0.641 0.78 0.512 3e-38
P87242198 HD domain-containing prot yes no 0.679 0.833 0.479 3e-38
Q54FK1190 HD domain-containing prot yes no 0.658 0.842 0.473 6e-38
Q66L17201 HD domain-containing prot N/A no 0.695 0.840 0.450 1e-37
P38331238 HD domain-containing prot yes no 0.629 0.642 0.446 9e-33
P53144215 HD domain-containing prot no no 0.609 0.688 0.441 6e-31
Q7Z4H3204 HD domain-containing prot yes no 0.670 0.799 0.473 2e-28
Q3SXD3199 HD domain-containing prot yes no 0.679 0.829 0.473 3e-28
Q0P565205 HD domain-containing prot yes no 0.703 0.834 0.448 3e-28
>sp|Q1LUI2|HDDC2_DANRE HD domain-containing protein 2 OS=Danio rerio GN=hddc2 PE=2 SV=1 Back     alignment and function desciption
 Score =  158 bits (400), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 82/160 (51%), Positives = 108/160 (67%), Gaps = 4/160 (2%)

Query: 86  IDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDRERCIKIAIV 145
           + F+ L   LK   R GW+   IK PES++DHMYRM++MAL   DI  V++ERC+K+A+V
Sbjct: 5   LQFMKLVGQLKRVPRTGWVYRNIKQPESVSDHMYRMSMMALTIQDI-SVNKERCMKLALV 63

Query: 146 HDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIE 205
           HD+AE IVGDI P+D V K  K R E++A+  +  +L  G+R +EI  LW EYE  +S E
Sbjct: 64  HDLAECIVGDIAPADNVSKAEKHRREKDAMVHITGLLDDGLR-KEIYNLWEEYETQSSPE 122

Query: 206 ANLVKDFDKVEMILQALEYEMEHGK--VLDEFFLSTAGKI 243
           A LVK+ D +EMI+QA EYE   GK   L EFF+ST GK 
Sbjct: 123 AKLVKELDNLEMIIQAHEYEELEGKPGRLQEFFVSTEGKF 162

Danio rerio (taxid: 7955)
>sp|P87242|YC0H_SCHPO HD domain-containing protein C4G3.17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4G3.17 PE=3 SV=1 Back     alignment and function description
>sp|Q54FK1|HDDC2_DICDI HD domain-containing protein 2 homolog OS=Dictyostelium discoideum GN=hddc2 PE=3 SV=1 Back     alignment and function description
>sp|Q66L17|HDDC2_XENLA HD domain-containing protein 2 OS=Xenopus laevis GN=hddc2 PE=2 SV=1 Back     alignment and function description
>sp|P38331|YB92_YEAST HD domain-containing protein YBR242W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YBR242W PE=1 SV=1 Back     alignment and function description
>sp|P53144|YGK1_YEAST HD domain-containing protein YGL101W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YGL101W PE=1 SV=1 Back     alignment and function description
>sp|Q7Z4H3|HDDC2_HUMAN HD domain-containing protein 2 OS=Homo sapiens GN=HDDC2 PE=1 SV=1 Back     alignment and function description
>sp|Q3SXD3|HDDC2_MOUSE HD domain-containing protein 2 OS=Mus musculus GN=Hddc2 PE=2 SV=1 Back     alignment and function description
>sp|Q0P565|HDDC2_BOVIN HD domain-containing protein 2 OS=Bos taurus GN=HDDC2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query243
255546931262 catalytic, putative [Ricinus communis] g 0.971 0.900 0.75 2e-91
356496032261 PREDICTED: HD domain-containing protein 0.905 0.842 0.722 2e-87
18395782258 Metal-dependent phosphohydrolase [Arabid 0.954 0.899 0.692 1e-86
356499996269 PREDICTED: HD domain-containing protein 0.921 0.832 0.719 2e-86
449442315265 PREDICTED: HD domain-containing protein 0.983 0.901 0.688 3e-85
297845584254 metal-dependent phosphohydrolase HD doma 0.938 0.897 0.668 3e-83
225423796262 PREDICTED: HD domain-containing protein 0.814 0.755 0.774 6e-82
388507444239 unknown [Lotus japonicus] 0.679 0.690 0.866 1e-80
226501884282 HD domain containing protein [Zea mays] 0.934 0.804 0.682 1e-79
414881245269 TPA: HD domain containing protein [Zea m 0.934 0.843 0.682 1e-79
>gi|255546931|ref|XP_002514523.1| catalytic, putative [Ricinus communis] gi|223546127|gb|EEF47629.1| catalytic, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 183/244 (75%), Positives = 203/244 (83%), Gaps = 8/244 (3%)

Query: 1   MAVNSSTHRALPLNRPVQLRFRLSPAFFYNR-TSSRPVFSTDAPNLRLVSVRARKPGSDG 59
           MAVN ST R  P +     R   SP  F+ R +SSRP F T+ P  R+VSVR++ P SDG
Sbjct: 1   MAVNPST-RCFPRSLAPPPR---SPVVFFKRVSSSRPSFLTELPVSRIVSVRSQVPSSDG 56

Query: 60  FGYKKSVNLTDSEAPIGSSSSSTSSAIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMY 119
            G  + V   + ++ IGSSSSS+S AIDFLTLCH LKTTKRKGWINHGIKGPESIADHMY
Sbjct: 57  SGPLRFV--IEPQSDIGSSSSSSS-AIDFLTLCHRLKTTKRKGWINHGIKGPESIADHMY 113

Query: 120 RMALMALIAGDIPGVDRERCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMC 179
           RMALMALIAGD+P ++RERCIKIAIVHDIAEAIVGDITPSDGVPK+ KSR EQ ALNEMC
Sbjct: 114 RMALMALIAGDLPNLNRERCIKIAIVHDIAEAIVGDITPSDGVPKQEKSRREQAALNEMC 173

Query: 180 KVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKVLDEFFLST 239
           +VLGGGMRAEEI+ELW EYENNAS+EANLVKDFDKVEMILQALEYEMEHGKVLDEFFLST
Sbjct: 174 EVLGGGMRAEEIKELWEEYENNASLEANLVKDFDKVEMILQALEYEMEHGKVLDEFFLST 233

Query: 240 AGKI 243
           +GK 
Sbjct: 234 SGKF 237

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356496032|ref|XP_003516874.1| PREDICTED: HD domain-containing protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|18395782|ref|NP_564240.1| Metal-dependent phosphohydrolase [Arabidopsis thaliana] gi|15810417|gb|AAL07096.1| unknown protein [Arabidopsis thaliana] gi|21280857|gb|AAM45013.1| unknown protein [Arabidopsis thaliana] gi|21593302|gb|AAM65251.1| unknown [Arabidopsis thaliana] gi|332192535|gb|AEE30656.1| Metal-dependent phosphohydrolase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356499996|ref|XP_003518821.1| PREDICTED: HD domain-containing protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|449442315|ref|XP_004138927.1| PREDICTED: HD domain-containing protein C4G3.17-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297845584|ref|XP_002890673.1| metal-dependent phosphohydrolase HD domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297336515|gb|EFH66932.1| metal-dependent phosphohydrolase HD domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225423796|ref|XP_002277753.1| PREDICTED: HD domain-containing protein 2 [Vitis vinifera] gi|297737914|emb|CBI27115.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388507444|gb|AFK41788.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|226501884|ref|NP_001151059.1| HD domain containing protein [Zea mays] gi|195643996|gb|ACG41466.1| HD domain containing protein [Zea mays] Back     alignment and taxonomy information
>gi|414881245|tpg|DAA58376.1| TPA: HD domain containing protein [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query243
TAIR|locus:2028746258 AT1G26160 [Arabidopsis thalian 0.950 0.895 0.683 6.2e-78
TAIR|locus:2061421257 AT2G23820 [Arabidopsis thalian 0.888 0.840 0.565 9.3e-59
ZFIN|ZDB-GENE-050522-394200 hddc2 "HD domain containing 2" 0.637 0.775 0.515 6.3e-37
UNIPROTKB|Q7Z4H3204 HDDC2 "HD domain-containing pr 0.633 0.754 0.487 1e-36
RGD|1307562199 Hddc2 "HD domain containing 2" 0.625 0.763 0.506 2.1e-36
POMBASE|SPCC4G3.17198 SPCC4G3.17 "HD domain metal de 0.637 0.782 0.509 3.5e-36
UNIPROTKB|F1N9Z8199 HDDC2 "Uncharacterized protein 0.633 0.773 0.487 4.4e-36
UNIPROTKB|F1PX39200 HDDC2 "Uncharacterized protein 0.600 0.73 0.5 7.2e-36
UNIPROTKB|F1S2V3205 HDDC2 "Uncharacterized protein 0.633 0.751 0.481 7.2e-36
UNIPROTKB|Q0P565205 HDDC2 "HD domain-containing pr 0.633 0.751 0.481 9.2e-36
TAIR|locus:2028746 AT1G26160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
 Identities = 166/243 (68%), Positives = 184/243 (75%)

Query:     1 MAVNS-STHRALPLNRPVQLRFRLSPAFFYNRTSSRPVFSTDAPNLRLVSVRARKPGSDG 59
             MAV S +T  A PLNRP   R  L  A F++ + +        P+  +VSVR +KP SDG
Sbjct:     1 MAVISPATRFAPPLNRPFHRRSIL--ASFHSSSRNFLFLGKPTPSSTIVSVRCQKPVSDG 58

Query:    60 FGYKKSVNLTDSEAPIGXXXXXXXXAIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMY 119
                 +S+N   S             +IDFLTLCH LKTTKRKGWIN GI GPESIADHMY
Sbjct:    59 VSSMESMNHVASSV---------SSSIDFLTLCHRLKTTKRKGWINQGINGPESIADHMY 109

Query:   120 RMALMALIAGDIPGVDRERCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMC 179
             RMALMALIAGD+ GVDRERCIK+AIVHDIAEAIVGDITPSDGVPKE KSR E  AL EMC
Sbjct:   110 RMALMALIAGDLTGVDRERCIKMAIVHDIAEAIVGDITPSDGVPKEEKSRRETAALKEMC 169

Query:   180 KVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKVLDEFFLST 239
             +VLGGG+RAEEI ELW EYENNAS+EAN+VKDFDKVEMILQALEYE EHGKVLDEFF+ST
Sbjct:   170 EVLGGGLRAEEITELWLEYENNASLEANIVKDFDKVEMILQALEYEAEHGKVLDEFFIST 229

Query:   240 AGK 242
             AGK
Sbjct:   230 AGK 232
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0046872 "metal ion binding" evidence=IEA
TAIR|locus:2061421 AT2G23820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050522-394 hddc2 "HD domain containing 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q7Z4H3 HDDC2 "HD domain-containing protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1307562 Hddc2 "HD domain containing 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
POMBASE|SPCC4G3.17 SPCC4G3.17 "HD domain metal dependent phosphohydrolase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|F1N9Z8 HDDC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PX39 HDDC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1S2V3 HDDC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q0P565 HDDC2 "HD domain-containing protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q1LUI2HDDC2_DANRENo assigned EC number0.51250.64190.78yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query243
pfam13023163 pfam13023, HD_3, HD domain 6e-51
COG1896193 COG1896, COG1896, Predicted hydrolases of HD super 1e-37
pfam01966111 pfam01966, HD, HD domain 5e-09
smart00471124 smart00471, HDc, Metal dependent phosphohydrolases 5e-05
>gnl|CDD|221899 pfam13023, HD_3, HD domain Back     alignment and domain information 
 Score =  163 bits (414), Expect = 6e-51
 Identities = 56/158 (35%), Positives = 84/158 (53%), Gaps = 8/158 (5%)

Query: 92  CHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDI--PGVDRERCIKIAIVHDIA 149
              LK  KR+GW+  G + PES+A+H + +ALMAL+  +    GVD  R IK+ ++HD+ 
Sbjct: 1   ADKLKFVKRQGWLQDGSR-PESVAEHSWHVALMALLLAEYAGEGVDIARVIKMLLIHDLV 59

Query: 150 EAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLV 209
           E   GDI   D + K+ K   E+EA   +  +L      EE++ LW E+E   + EA   
Sbjct: 60  EIDAGDIISPDKLDKKEKEEREREAAERIFGLLPEDQ-GEELRALWDEFEAGETPEARFA 118

Query: 210 KDFDKVEMILQALEYE----MEHGKVLDEFFLSTAGKI 243
           K  D++E ILQ LEYE          L + +   + K+
Sbjct: 119 KALDRLEPILQNLEYEGDSWAAFEVTLSQVYGRNSTKL 156

HD domains are metal dependent phosphohydrolases. Length = 163
>gnl|CDD|224808 COG1896, COG1896, Predicted hydrolases of HD superfamily [General function prediction only] Back     alignment and domain information
>gnl|CDD|216815 pfam01966, HD, HD domain Back     alignment and domain information
>gnl|CDD|214679 smart00471, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 243
KOG3197210 consensus Predicted hydrolases of HD superfamily [ 100.0
PF13023165 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B. 100.0
PRK03826195 5'-nucleotidase; Provisional 100.0
COG1896193 Predicted hydrolases of HD superfamily [General fu 100.0
PF12917215 HD_2: HD containing hydrolase-like enzyme ; PDB: 3 99.93
cd00077145 HDc Metal dependent phosphohydrolases with conserv 98.08
smart00471124 HDc Metal dependent phosphohydrolases with conserv 97.88
PF01966122 HD: HD domain; InterPro: IPR006674 This domain is 97.74
PRK10119231 putative hydrolase; Provisional 97.71
TIGR03401228 cyanamide_fam HD domain protein, cyanamide hydrata 97.31
TIGR00295164 conserved hypothetical protein TIGR00295. This set 97.25
PRK12705508 hypothetical protein; Provisional 97.12
COG1418222 Predicted HD superfamily hydrolase [General functi 96.88
PRK13480314 3'-5' exoribonuclease YhaM; Provisional 96.43
PRK12703339 tRNA 2'-O-methylase; Reviewed 96.41
PRK12704520 phosphodiesterase; Provisional 96.36
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 95.74
TIGR0027780 HDIG uncharacterized domain HDIG. This domain is f 95.67
COG2206344 c-di-GMP phosphodiesterase class II (HD-GYP domain 95.61
PRK00106535 hypothetical protein; Provisional 94.99
TIGR00488158 putative HD superfamily hydrolase of NAD metabolis 94.9
PRK07152342 nadD putative nicotinate-nucleotide adenylyltransf 92.83
COG1713187 Predicted HD superfamily hydrolase involved in NAD 89.41
COG4341186 Predicted HD phosphohydrolase [General function pr 82.79
PF13328153 HD_4: HD domain; PDB: 3NR1_B. 81.42
PF08668196 HDOD: HDOD domain; InterPro: IPR013976 This domain 81.08
>KOG3197 consensus Predicted hydrolases of HD superfamily [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-52  Score=359.76  Aligned_cols=163  Identities=62%  Similarity=1.006  Sum_probs=156.0

Q ss_pred             CCChHHHHHHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhhhhcCCCC
Q 043096           79 SSSTSSAIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAIVGDITP  158 (243)
Q Consensus        79 ~s~~~~~i~Fl~~~~rLK~i~R~Gw~~~gV~~~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea~tGDI~~  158 (243)
                      ++...++++||..+++||+++|+||+.+||+.|||||+|||||+++||++.+ .+||.+||++|||+||++|+++|||+|
T Consensus        21 s~~~~sil~FL~l~~~LK~~~RTGWv~~gv~~pESIadHMYRM~llaml~~d-~~vnr~rC~kiAlVHD~AEslVgditP   99 (210)
T KOG3197|consen   21 SSSSKSILQFLDLLGRLKTTPRTGWVKRGVNEPESIADHMYRMALLAMLIKD-PGVNRERCMKIALVHDIAESLVGDITP   99 (210)
T ss_pred             cCCchHHHHHHHHHHHhccCCCccccccCCCCcchHHHHHHHHHHHHHHhcC-CCcCHHHHHHHHHHHHHHHHHhCCCCC
Confidence            3344489999999999999999999999999999999999999999999999 999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhcC--ccchhhh
Q 043096          159 SDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHG--KVLDEFF  236 (243)
Q Consensus       159 ~d~~~~~~K~~~E~~A~~~L~~lLp~~~~~~e~~~Lw~EyE~~~T~EAklVK~~DkLe~llQa~eYe~~~~--~~l~ef~  236 (243)
                      .+++++++|+++|-+|++.|+++|+++.+++|+.+||.|||+++|+||++||++||++|++||+|||+++|  ++|++||
T Consensus       100 ~~~vsKeeK~rre~eamk~ic~~l~~~~~akEi~elw~eYE~~ss~Eak~VKdlDK~eMi~QafEYE~~~ng~~~lq~F~  179 (210)
T KOG3197|consen  100 SDGVSKEEKHRREFEAMKYICQLLIGELRAKEITELWLEYEEASSLEAKFVKDLDKFEMIVQAFEYEKKHNGEKDLQQFF  179 (210)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCchhHHHHHhhHHHHHHHHHHHHHHHhcccchHHHHH
Confidence            99999999999999999999999998888999999999999999999999999999999999999999875  4799999


Q ss_pred             hhccCCC
Q 043096          237 LSTAGKI  243 (243)
Q Consensus       237 ~s~~g~~  243 (243)
                       ||+|+|
T Consensus       180 -st~g~~  185 (210)
T KOG3197|consen  180 -STVGKF  185 (210)
T ss_pred             -Hhcccc
Confidence             899987

>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B Back     alignment and domain information
>PRK03826 5'-nucleotidase; Provisional Back     alignment and domain information
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only] Back     alignment and domain information
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B Back     alignment and domain information
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity [] Back     alignment and domain information
>PRK10119 putative hydrolase; Provisional Back     alignment and domain information
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family Back     alignment and domain information
>TIGR00295 conserved hypothetical protein TIGR00295 Back     alignment and domain information
>PRK12705 hypothetical protein; Provisional Back     alignment and domain information
>COG1418 Predicted HD superfamily hydrolase [General function prediction only] Back     alignment and domain information
>PRK13480 3'-5' exoribonuclease YhaM; Provisional Back     alignment and domain information
>PRK12703 tRNA 2'-O-methylase; Reviewed Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>TIGR00277 HDIG uncharacterized domain HDIG Back     alignment and domain information
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms] Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism Back     alignment and domain information
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated Back     alignment and domain information
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism] Back     alignment and domain information
>COG4341 Predicted HD phosphohydrolase [General function prediction only] Back     alignment and domain information
>PF13328 HD_4: HD domain; PDB: 3NR1_B Back     alignment and domain information
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query243
4dmb_A204 X-Ray Structure Of Human Hepatitus C Virus Ns5a-Tra 4e-25
2cqz_A177 Crystal Structure Of Ph0347 Protein From Pyrococcus 1e-21
1xx7_A184 Conserved Hypothetical Protein From Pyrococcus Furi 1e-20
1yoy_A175 Predicted Coding Region Af1432 From Archaeoglobus F 6e-09
1ynb_A173 Crystal Structure Of Genomics Apc5600 Length = 173 9e-09
3kh1_A200 Crystal Structure Of Predicted Metal-Dependent Phos 6e-05
>pdb|4DMB|A Chain A, X-Ray Structure Of Human Hepatitus C Virus Ns5a-Transactivated Protein 2 At The Resolution 1.9a, Northeast Structural Genomics Consortium (Nesg) Target Hr6723 Length = 204 Back     alignment and structure 
Iteration: 1

 Score =  111 bits (277), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 106/161 (65%), Gaps = 6/161 (3%)
Query: 86  IDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDRERCIKIAIV 145
           + FL L   LK   R GW+   ++ PES++DH YR A+ A +  D   ++++RC+++A+V
Sbjct: 18  LQFLRLVGQLKRVPRTGWVYRNVQRPESVSDHXYRXAVXAXVIKD-DRLNKDRCVRLALV 76
Query: 146 HDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIE 205
           HD AE IVGDI P+D +PKE K R E+EA  ++ ++L   +R +E+ ELW EYE  +S E
Sbjct: 77  HDXAECIVGDIAPADNIPKEEKHRREEEAXKQITQLLPEDLR-KELYELWEEYETQSSAE 135
Query: 206 ANLVKDFDKVEMILQALEYE-MEH--GKVLDEFFLSTAGKI 243
           A  VK  D+ E ILQA EYE +EH  G+ L +F+ STAGK 
Sbjct: 136 AKFVKQLDQCEXILQASEYEDLEHKPGR-LQDFYDSTAGKF 175
>pdb|2CQZ|A Chain A, Crystal Structure Of Ph0347 Protein From Pyrococcus Horikoshii Ot3 Length = 177 Back     alignment and structure
>pdb|1XX7|A Chain A, Conserved Hypothetical Protein From Pyrococcus Furiosus Pfu- 403030-001 Length = 184 Back     alignment and structure
>pdb|1YOY|A Chain A, Predicted Coding Region Af1432 From Archaeoglobus Fulgidus Length = 175 Back     alignment and structure
>pdb|1YNB|A Chain A, Crystal Structure Of Genomics Apc5600 Length = 173 Back     alignment and structure
>pdb|3KH1|A Chain A, Crystal Structure Of Predicted Metal-Dependent Phosphohydrolase (Zp_00055740.2) From Magnetospirillum Magnetotacticum Ms-1 At 1.37 A Resolution Length = 200 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query243
4dmb_A204 HD domain-containing protein 2; structural genomic 3e-51
3kh1_A200 Predicted metal-dependent phosphohydrolase; struct 9e-49
1xx7_A184 Oxetanocin-like protein; PSI, secsg, protein struc 5e-48
2cqz_A177 177AA long hypothetical protein; hypothetical prot 1e-46
1ynb_A173 Hypothetical protein AF1432; structural genomics, 7e-40
2paq_A201 5'-deoxynucleotidase YFBR; HD domain phosphoh stru 2e-38
3mzo_A216 LIN2634 protein; HD-domain phosphohydrolase, struc 6e-27
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens} Length = 204 Back     alignment and structure
 Score =  164 bits (417), Expect = 3e-51
 Identities = 79/175 (45%), Positives = 113/175 (64%), Gaps = 4/175 (2%)

Query: 71  SEAPIGSSSSSTSSAIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGD 130
           S +    S     S + FL L   LK   R GW+   ++ PES++DHMYRMA+MA++  D
Sbjct: 3   SVSSATFSGHGARSLLQFLRLVGQLKRVPRTGWVYRNVQRPESVSDHMYRMAVMAMVIKD 62

Query: 131 IPGVDRERCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEE 190
              ++++RC+++A+VHD+AE IVGDI P+D +PKE K R E+EA+ ++ ++L   +R +E
Sbjct: 63  -DRLNKDRCVRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLR-KE 120

Query: 191 IQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKV--LDEFFLSTAGKI 243
           + ELW EYE  +S EA  VK  D+ EMILQA EYE    K   L +F+ STAGK 
Sbjct: 121 LYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLEHKPGRLQDFYDSTAGKF 175
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1} Length = 200 Back     alignment and structure
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1 Length = 184 Back     alignment and structure
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} Length = 177 Back     alignment and structure
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A Length = 173 Back     alignment and structure
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A* Length = 201 Back     alignment and structure
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua} Length = 216 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query243
4dmb_A204 HD domain-containing protein 2; structural genomic 100.0
3kh1_A200 Predicted metal-dependent phosphohydrolase; struct 100.0
1ynb_A173 Hypothetical protein AF1432; structural genomics, 100.0
1xx7_A184 Oxetanocin-like protein; PSI, secsg, protein struc 100.0
2cqz_A177 177AA long hypothetical protein; hypothetical prot 100.0
2paq_A201 5'-deoxynucleotidase YFBR; HD domain phosphoh stru 100.0
3mzo_A216 LIN2634 protein; HD-domain phosphohydrolase, struc 100.0
2gz4_A207 Hypothetical protein ATU1052; structural genomics, 99.95
3b57_A209 LIN1889 protein; Q92AN1, X-RAY, NESG, structural g 97.59
3dto_A223 BH2835 protein; all alpha-helical protein, structu 97.39
3gw7_A239 Uncharacterized protein YEDJ; all alpha-helical pr 97.31
3djb_A223 Hydrolase, HD family; all alpha-helical protein., 97.28
2pjq_A231 Uncharacterized protein LP_2664; LPR71, NESG, stru 96.83
2qgs_A225 Protein Se1688; alpha-helical protein, structural 96.81
3tm8_A328 BD1817, uncharacterized protein; HD-GYP, phosphodi 96.7
2hek_A 371 Hypothetical protein; predominantly alpha helical 96.59
2pq7_A220 Predicted HD superfamily hydrolase; 104161995, HD 96.33
2o08_A188 BH1327 protein; putative HD superfamily hydrolase, 95.07
3ccg_A190 HD superfamily hydrolase; NP_347894.1, HD domain, 94.99
2ogi_A196 Hypothetical protein SAG1661; structural genomics, 94.89
3hc1_A305 Uncharacterized HDOD domain protein; HDOD domain p 94.21
2dqb_A 376 Deoxyguanosinetriphosphate triphosphohydrolase, P; 93.31
3nr1_A178 HD domain-containing protein 3; stringent response 90.52
3m1t_A275 Putative phosphohydrolase; structural genomics, jo 89.27
3nqw_A179 CG11900; stringent response, pyrophosphohydrolase, 88.34
3ljx_A288 MMOQ response regulator; structural genomics, PSI- 88.31
2q14_A 410 Phosphohydrolase; BT4208, HD domain, structural ge 86.05
3i7a_A281 Putative metal-dependent phosphohydrolase; YP_9268 82.99
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.5e-50  Score=352.93  Aligned_cols=165  Identities=47%  Similarity=0.816  Sum_probs=153.4

Q ss_pred             CCCCChHHHHHHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhhhhcCC
Q 043096           77 SSSSSTSSAIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAIVGDI  156 (243)
Q Consensus        77 ~~~s~~~~~i~Fl~~~~rLK~i~R~Gw~~~gV~~~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea~tGDI  156 (243)
                      .+...++++++|+.++++||+++||||+.+||+++||||||||+||+||+++++ .++|++||++|||+||++|++||||
T Consensus         9 ~~~~~~~~~~~Fl~~~~~LK~i~R~g~~~~gv~~~ESVAEHS~~vAliA~~l~~-~~vD~~r~~~maL~HDl~E~~tGDi   87 (204)
T 4dmb_A            9 FSGHGARSLLQFLRLVGQLKRVPRTGWVYRNVQRPESVSDHMYRMAVMAMVIKD-DRLNKDRCVRLALVHDMAECIVGDI   87 (204)
T ss_dssp             ----CHHHHHHHHHHHHHGGGCBCHHHHHTTCSSCCBHHHHHHHHHHHHHHSCC-TTSCHHHHHHHHHHTTTTHHHHCCC
T ss_pred             ccccCHHHHHHHHHHHHHhccCccCCCcCCCCCCCCcHHHHHHHHHHHHHHHcc-ccCCHHHHHHHHHhcchHHhhcCCC
Confidence            355669999999999999999999999999998899999999999999999997 4699999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhcCc--cchh
Q 043096          157 TPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGK--VLDE  234 (243)
Q Consensus       157 ~~~d~~~~~~K~~~E~~A~~~L~~lLp~~~~~~e~~~Lw~EyE~~~T~EAklVK~~DkLe~llQa~eYe~~~~~--~l~e  234 (243)
                      ++.+...+..|+++|++|+++++++||++. +.+|.+||.|||+++|+||+|||++|||+++|||++|+++||.  +|++
T Consensus        88 tp~k~~~~~~k~~~E~~A~~~l~~~LP~~~-~~e~~~Lw~Eye~~~t~Ea~~vK~aDkle~llqa~ey~~~Gn~~~~l~~  166 (204)
T 4dmb_A           88 APADNIPKEEKHRREEEAMKQITQLLPEDL-RKELYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLEHKPGRLQD  166 (204)
T ss_dssp             CGGGCCCHHHHHHHHHHHHHHHHTTSCHHH-HHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTTHH
T ss_pred             ccccccchhhhHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHH
Confidence            888788888999999999999999999865 5899999999999999999999999999999999999999998  8999


Q ss_pred             hhhhccCCC
Q 043096          235 FFLSTAGKI  243 (243)
Q Consensus       235 f~~s~~g~~  243 (243)
                      ||.++.|+|
T Consensus       167 ff~~~~~~~  175 (204)
T 4dmb_A          167 FYDSTAGKF  175 (204)
T ss_dssp             HHHHTTTCC
T ss_pred             HHHHHHHHh
Confidence            999999886
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1} Back     alignment and structure
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A Back     alignment and structure
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1 Back     alignment and structure
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} Back     alignment and structure
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A* Back     alignment and structure
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua} Back     alignment and structure
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1 Back     alignment and structure
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1 Back     alignment and structure
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1 Back     alignment and structure
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12} Back     alignment and structure
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1 Back     alignment and structure
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1 Back     alignment and structure
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1 Back     alignment and structure
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A Back     alignment and structure
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1 Back     alignment and structure
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1 Back     alignment and structure
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans} Back     alignment and structure
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824} Back     alignment and structure
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens} Back     alignment and structure
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus} Back     alignment and structure
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens} Back     alignment and structure
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0 Back     alignment and structure
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A Back     alignment and structure
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 243
d1xx7a_172 a.211.1.1 (A:) Oxetanocin-like protein PF0395 {Pyr 8e-52
d1ynba1167 a.211.1.1 (A:7-173) Hypothetical protein AF1432 {A 3e-46
d2paqa1186 a.211.1.1 (A:2-187) 5'-nucleotidase YfbR {Escheric 3e-38
>d1xx7a_ a.211.1.1 (A:) Oxetanocin-like protein PF0395 {Pyrococcus furiosus [TaxId: 2261]} Length = 172 Back     information, alignment and structure

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Oxetanocin-like protein PF0395
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  164 bits (415), Expect = 8e-52
 Identities = 58/163 (35%), Positives = 86/163 (52%), Gaps = 15/163 (9%)

Query: 85  AIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDI-----PGVDRERC 139
           +ID + L   LK   R GW+  G+  PES+ADH YR+A + L+  +        +D E+ 
Sbjct: 1   SIDLILLAGKLKRIPRMGWLIKGVPNPESVADHSYRVAFITLLLAEELKKKGVEIDVEKA 60

Query: 140 IKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYE 199
           +KIAI+HD+ EAI+ D+ P        K   E +AL ++           E  EL+ EY 
Sbjct: 61  LKIAIIHDLGEAIITDL-PLSAQKYLNKEEAEAKALKDVL---------PEYTELFEEYS 110

Query: 200 NNASIEANLVKDFDKVEMILQALEYEMEHGKVLDEFFLSTAGK 242
              ++E  LVK  DK++MI+QA EYE+   K L EF+ +    
Sbjct: 111 KALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEFWNALEDL 153
>d1ynba1 a.211.1.1 (A:7-173) Hypothetical protein AF1432 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 167 Back     information, alignment and structure
>d2paqa1 a.211.1.1 (A:2-187) 5'-nucleotidase YfbR {Escherichia coli [TaxId: 562]} Length = 186 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query243
d1xx7a_172 Oxetanocin-like protein PF0395 {Pyrococcus furiosu 100.0
d1ynba1167 Hypothetical protein AF1432 {Archaeon Archaeoglobu 100.0
d2paqa1186 5'-nucleotidase YfbR {Escherichia coli [TaxId: 562 100.0
d2gz4a1200 Hypothetical protein Atu1052 {Agrobacterium tumefa 98.81
d3dtoa1212 Uncharacterized protein BH2835 {Bacillus haloduran 97.82
d2pq7a1217 Predicted hydrolase mes0020 {Uncultured thermotoga 97.71
d2pjqa1215 Uncharacterized protein LP2664 {Lactobacillus plan 97.69
d3b57a1201 Uncharacterized protein Lin1889 {Listeria innocua 97.6
d3djba1213 Uncharacterized protein BT9727_1981 {Bacillus thur 97.56
d2qgsa1216 Uncharacterized protein SE1688 {Staphylococcus epi 97.27
>d1xx7a_ a.211.1.1 (A:) Oxetanocin-like protein PF0395 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Oxetanocin-like protein PF0395
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=3.4e-44  Score=302.59  Aligned_cols=145  Identities=40%  Similarity=0.650  Sum_probs=129.0

Q ss_pred             HHHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCC-----CCCCHHHHHHHHHHhhhhhhhhcCCCCCC
Q 043096           86 IDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDI-----PGVDRERCIKIAIVHDIAEAIVGDITPSD  160 (243)
Q Consensus        86 i~Fl~~~~rLK~i~R~Gw~~~gV~~~ESVAEHS~~vAliAllla~~-----~~vD~~KvlkmALiHDL~Ea~tGDI~~~d  160 (243)
                      ++||.++++||+++|+||+.+|++++||||||||+||+||++++..     .++|++||++|||+||++|++||||+.+.
T Consensus         2 ~~fl~~~~~Lk~~~R~GW~~~gv~~~EsVAeHs~~vA~ia~~la~~~~~~~~~vd~~k~~~maL~HDl~E~~~GDip~~~   81 (172)
T d1xx7a_           2 IDLILLAGKLKRIPRMGWLIKGVPNPESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGEAIITDLPLSA   81 (172)
T ss_dssp             HHHHHHHHHTTTSBCHHHHHHTCSSCCBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHHHHCCCCHHH
T ss_pred             hHHHHHHHHHcCCcccccccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccccCHHHHHHHHHHhhhHHHHcCCCCccc
Confidence            6899999999999999999999999999999999999999999843     47999999999999999999999996543


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhhhcc
Q 043096          161 GVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKVLDEFFLSTA  240 (243)
Q Consensus       161 ~~~~~~K~~~E~~A~~~L~~lLp~~~~~~e~~~Lw~EyE~~~T~EAklVK~~DkLe~llQa~eYe~~~~~~l~ef~~s~~  240 (243)
                       .....|+..|.+++.+++         +++.++|.|||+++|+||++||++|||++++||++|+..||.++++||.++.
T Consensus        82 -~~~~~~~~~e~~~~~~l~---------~~~~~l~~eye~~~s~Ea~~vk~~DkL~~~lqa~~y~~~g~~~~~ef~~~~~  151 (172)
T d1xx7a_          82 -QKYLNKEEAEAKALKDVL---------PEYTELFEEYSKALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEFWNALE  151 (172)
T ss_dssp             -HTTSCHHHHHHHHHHHHC---------GGGHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSCGGGGGHHH
T ss_pred             -hhhhhHHHHHHHHHHHhc---------chhHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence             223446677777776652         2577899999999999999999999999999999999999999999998754
>d1ynba1 a.211.1.1 (A:7-173) Hypothetical protein AF1432 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2paqa1 a.211.1.1 (A:2-187) 5'-nucleotidase YfbR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gz4a1 a.211.1.1 (A:6-205) Hypothetical protein Atu1052 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]} Back     information, alignment and structure
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]} Back     information, alignment and structure
>d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981 {Bacillus thuringiensis [TaxId: 1428]} Back     information, alignment and structure
>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]} Back     information, alignment and structure