Citrus Sinensis ID: 043102
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 525 | 2.2.26 [Sep-21-2011] | |||||||
| Q49807 | 308 | Cyclopropane mycolic acid | yes | no | 0.272 | 0.464 | 0.275 | 1e-08 | |
| P0C5C2 | 287 | Cyclopropane mycolic acid | no | no | 0.272 | 0.498 | 0.264 | 1e-06 | |
| A5U866 | 287 | Cyclopropane mycolic acid | no | no | 0.272 | 0.498 | 0.264 | 1e-06 | |
| P0A5P0 | 302 | Cyclopropane mycolic acid | no | no | 0.272 | 0.473 | 0.283 | 3e-06 | |
| P0A5P1 | 302 | Cyclopropane mycolic acid | no | no | 0.272 | 0.473 | 0.283 | 3e-06 | |
| Q79FX6 | 287 | Cyclopropane mycolic acid | no | no | 0.278 | 0.508 | 0.236 | 2e-05 | |
| A5U029 | 287 | Cyclopropane mycolic acid | no | no | 0.278 | 0.508 | 0.236 | 2e-05 | |
| Q7D9R5 | 287 | Cyclopropane mycolic acid | no | no | 0.272 | 0.498 | 0.254 | 2e-05 | |
| Q7U1J9 | 287 | Cyclopropane mycolic acid | no | no | 0.278 | 0.508 | 0.246 | 0.0001 | |
| P0A9H7 | 382 | Cyclopropane-fatty-acyl-p | N/A | no | 0.253 | 0.348 | 0.236 | 0.0004 |
| >sp|Q49807|CMAS2_MYCLE Cyclopropane mycolic acid synthase 2 OS=Mycobacterium leprae (strain TN) GN=cmaA2 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 83/218 (38%), Gaps = 75/218 (34%)
Query: 370 ISRHYDLSNELFCLFLDESLTYSCALFKVREVIFLGTIEVVKR----------------- 412
+ HYD SNE F L+LD S+TYSCA F+ R + L + KR
Sbjct: 23 VQSHYDRSNEFFKLWLDPSMTYSCAYFE-RPDLTLEEAQRAKRDLALSKLGLEPGMTLLD 81
Query: 413 TGC-----------KY----TGITLAEKQLKYAGIKVKEADLERNDRS------------ 445
GC KY G+TL+ QL + +K E D R DR+
Sbjct: 82 IGCGWGSTMLHAIEKYDVNVIGLTLSANQLAHNKLKFAEIDHTRTDRTKDVRLQGWEQFD 141
Query: 446 ---------------------FGHEYMEEFFGCCESLIAKDGLFVLQFISIPDER-YNEF 483
G E + FF C ++ DG +L I +PD + E
Sbjct: 142 EPVDRIISLGAFEHFADGAGDAGFERYDSFFKMCYDVLPDDGRMLLHTIIVPDAKETKEL 201
Query: 484 RLSS--------DFMKEYIFPGGCLPSLSRITSAMSAA 513
L++ F+ IFPGG LP +S++ S A
Sbjct: 202 GLTTPMSLLRFIKFILTEIFPGGRLPKISQVDHYSSNA 239
|
Catalyzes the formation of trans cyclopropanated ketomycolate or methoxymycolate through the conversion of a double bond to a cyclopropane ring at the proximal position of an oxygenated mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. In the absence of MmaA2, CmaA2 has a non-specific cis-cyclopropanating activity and is able to catalyze the conversion of a double bond to a cis cyclopropane ring at the distal position of an alpha mycolic acid. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium leprae (taxid: 1769) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 7EC: 9 |
| >sp|P0C5C2|CMAS1_MYCTU Cyclopropane mycolic acid synthase 1 OS=Mycobacterium tuberculosis GN=cmaA1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 81/208 (38%), Gaps = 65/208 (31%)
Query: 369 HISRHYDLSNELFCLFLDESLTYSCALFKVREVIFLGTIEVVK----------------- 411
++ HYDLS++ F LFLD + TYSCA F+ R+ + L ++ K
Sbjct: 11 NVQAHYDLSDDFFRLFLDPTQTYSCAYFE-RDDMTLQEAQIAKIDLALGKLGLQPGMTLL 69
Query: 412 RTGC-----------KY----TGITLAEKQLKYAGIKVKEADLERNDR------------ 444
GC KY G+TL++ Q + V ++ R+ R
Sbjct: 70 DVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEP 129
Query: 445 -----------SFGHEYMEEFFGCCESLIAKDGLFVLQFIS--IPDERYNE-------FR 484
FGHE + FF L+ DG+ +L I+ P E + F
Sbjct: 130 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFA 189
Query: 485 LSSDFMKEYIFPGGCLPSLSRITSAMSA 512
F+ IFPGG LPS+ + SA
Sbjct: 190 RFLKFIVTEIFPGGRLPSIPMVQECASA 217
|
Catalyzes the conversion of a double bond to a cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium tuberculosis (taxid: 1773) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|A5U866|CMAS1_MYCTA Cyclopropane mycolic acid synthase 1 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=cmaA1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 81/208 (38%), Gaps = 65/208 (31%)
Query: 369 HISRHYDLSNELFCLFLDESLTYSCALFKVREVIFLGTIEVVK----------------- 411
++ HYDLS++ F LFLD + TYSCA F+ R+ + L ++ K
Sbjct: 11 NVQAHYDLSDDFFRLFLDPTQTYSCAYFE-RDDMTLQEAQIAKIDLALGKLGLQPGMTLL 69
Query: 412 RTGC-----------KY----TGITLAEKQLKYAGIKVKEADLERNDR------------ 444
GC KY G+TL++ Q + V ++ R+ R
Sbjct: 70 DVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEP 129
Query: 445 -----------SFGHEYMEEFFGCCESLIAKDGLFVLQFIS--IPDERYNE-------FR 484
FGHE + FF L+ DG+ +L I+ P E + F
Sbjct: 130 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFA 189
Query: 485 LSSDFMKEYIFPGGCLPSLSRITSAMSA 512
F+ IFPGG LPS+ + SA
Sbjct: 190 RFLKFIVTEIFPGGRLPSIPMVQECASA 217
|
Catalyzes the conversion of a double bond to a cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) (taxid: 419947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|P0A5P0|CMAS2_MYCTU Cyclopropane mycolic acid synthase 2 OS=Mycobacterium tuberculosis GN=cmaA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 81/215 (37%), Gaps = 72/215 (33%)
Query: 370 ISRHYDLSNELFCLFLDESLTYSCALFKVREVIFLGTIEVVKR----------------- 412
+ HYD SNE F L+LD S+TYSCA F+ R + L + KR
Sbjct: 20 VRSHYDKSNEFFKLWLDPSMTYSCAYFE-RPDMTLEEAQYAKRKLALDKLNLEPGMTLLD 78
Query: 413 TGCKY---------------TGITLAEKQLKYAGIKVKEADLERN--------------- 442
GC + G+TL+E Q + E D R
Sbjct: 79 IGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 138
Query: 443 DR-----SFGH----------EYMEEFFGCCESLIAKDGLFVLQFISIPD-ERYNEFRLS 486
DR +F H E + FF +L DG +L I+IPD E E L+
Sbjct: 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLT 198
Query: 487 S--------DFMKEYIFPGGCLPSLSRITSAMSAA 513
S F+ IFPGG LP +S++ S A
Sbjct: 199 SPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNA 233
|
Catalyzes the formation of trans cyclopropanated ketomycolate or methoxymycolate through the conversion of a double bond to a cyclopropane ring at the proximal position of an oxygenated mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. In the absence of MmaA2, CmaA2 has a non-specific cis-cyclopropanating activity and is able to catalyze the conversion of a double bond to a cis cyclopropane ring at the distal position of an alpha mycolic acid. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium tuberculosis (taxid: 1773) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|P0A5P1|CMAS2_MYCBO Cyclopropane mycolic acid synthase 2 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=cmaA2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 81/215 (37%), Gaps = 72/215 (33%)
Query: 370 ISRHYDLSNELFCLFLDESLTYSCALFKVREVIFLGTIEVVKR----------------- 412
+ HYD SNE F L+LD S+TYSCA F+ R + L + KR
Sbjct: 20 VRSHYDKSNEFFKLWLDPSMTYSCAYFE-RPDMTLEEAQYAKRKLALDKLNLEPGMTLLD 78
Query: 413 TGCKY---------------TGITLAEKQLKYAGIKVKEADLERN--------------- 442
GC + G+TL+E Q + E D R
Sbjct: 79 IGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 138
Query: 443 DR-----SFGH----------EYMEEFFGCCESLIAKDGLFVLQFISIPD-ERYNEFRLS 486
DR +F H E + FF +L DG +L I+IPD E E L+
Sbjct: 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLT 198
Query: 487 S--------DFMKEYIFPGGCLPSLSRITSAMSAA 513
S F+ IFPGG LP +S++ S A
Sbjct: 199 SPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNA 233
|
Catalyzes the formation of trans cyclopropanated ketomycolate or methoxymycolate through the conversion of a double bond to a cyclopropane ring at the proximal position of an oxygenated mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. In the absence of MmaA2, CmaA2 has a non-specific cis-cyclopropanating activity and is able to catalyze the conversion of a double bond to a cis cyclopropane ring at the distal position of an alpha mycolic acid. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium bovis (taxid: 1765) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|Q79FX6|MMAA2_MYCTU Cyclopropane mycolic acid synthase MmaA2 OS=Mycobacterium tuberculosis GN=mmaA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 79/211 (37%), Gaps = 65/211 (30%)
Query: 360 TNTLTQACRHISRHYDLSNELFCLFLDESLTYSCALFKVREVIFLGTIEVVK-------- 411
N LT + HYDLS++ F LFLD + TYSCA F+ RE + L ++ K
Sbjct: 2 VNDLTPHFEDVQAHYDLSDDFFRLFLDPTQTYSCAHFE-REDMTLEEAQIAKIDLALGKL 60
Query: 412 ---------RTGCKY---------------TGITLAEKQLKYAGIKVKEADLERNDR--- 444
GC + G+TL++ Q + E D R+ R
Sbjct: 61 GLQPGMTLLDIGCGWGATMRRAIAQYDVNVVGLTLSKNQAAHVQKSFDEMDTPRDRRVLL 120
Query: 445 --------------------SFGHEYMEEFFGCCESLIAKDGLFVLQFIS-IPDERYNEF 483
FGH+ +FF ++ DG+ +L I+ + ++ +
Sbjct: 121 AGWEQFNEPVDRIVSIGAFEHFGHDRHADFFARAHKILPPDGVLLLHTITGLTRQQMVDH 180
Query: 484 RLS--------SDFMKEYIFPGGCLPSLSRI 506
L F+ IFPGG P++ +
Sbjct: 181 GLPLTLWLARFLKFIATEIFPGGQPPTIEMV 211
|
Catalyzes the conversion of a double bond to a cis cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. MmaA2 also catalyzes the biosynthesis of the cis-cyclopropanated methoxymycolates. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium tuberculosis (taxid: 1773) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|A5U029|MMAA2_MYCTA Cyclopropane mycolic acid synthase MmaA2 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=mmaA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 79/211 (37%), Gaps = 65/211 (30%)
Query: 360 TNTLTQACRHISRHYDLSNELFCLFLDESLTYSCALFKVREVIFLGTIEVVK-------- 411
N LT + HYDLS++ F LFLD + TYSCA F+ RE + L ++ K
Sbjct: 2 VNDLTPHFEDVQAHYDLSDDFFRLFLDPTQTYSCAHFE-REDMTLEEAQIAKIDLALGKL 60
Query: 412 ---------RTGCKY---------------TGITLAEKQLKYAGIKVKEADLERNDR--- 444
GC + G+TL++ Q + E D R+ R
Sbjct: 61 GLQPGMTLLDIGCGWGATMRRAIAQYDVNVVGLTLSKNQAAHVQKSFDEMDTPRDRRVLL 120
Query: 445 --------------------SFGHEYMEEFFGCCESLIAKDGLFVLQFIS-IPDERYNEF 483
FGH+ +FF ++ DG+ +L I+ + ++ +
Sbjct: 121 AGWEQFNEPVDRIVSIGAFEHFGHDRHADFFARAHKILPPDGVLLLHTITGLTRQQMVDH 180
Query: 484 RLS--------SDFMKEYIFPGGCLPSLSRI 506
L F+ IFPGG P++ +
Sbjct: 181 GLPLTLWLARFLKFIATEIFPGGQPPTIEMV 211
|
Catalyzes the conversion of a double bond to a cis cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. MmaA2 also catalyzes the biosynthesis of the cis-cyclopropanated methoxymycolates. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) (taxid: 419947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|Q7D9R5|CMAS3_MYCTU Cyclopropane mycolic acid synthase 3 OS=Mycobacterium tuberculosis GN=pcaA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 77/208 (37%), Gaps = 65/208 (31%)
Query: 363 LTQACRHISRHYDLSNELFCLFLDESLTYSCALFKVREVIFLGTIEVVK----------- 411
LT ++ HYDLS++ F LFLD + TYSCA F+ R+ + L ++ K
Sbjct: 5 LTPHFGNVQAHYDLSDDFFRLFLDPTQTYSCAYFE-RDDMTLQEAQIAKIDLALGKLNLE 63
Query: 412 ------RTGC-----------KY----TGITLAEKQLKYAGIKVKEADLERNDR------ 444
GC KY G+TL+E Q + + D R+ R
Sbjct: 64 PGMTLLDIGCGWGATMRRAIEKYDVNVVGLTLSENQAGHVQKMFDQMDTPRSRRVLLEGW 123
Query: 445 -----------------SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDER-------- 479
FGH+ FF + DG +L I P +
Sbjct: 124 EKFDEPVDRIVSIGAFEHFGHQRYHHFFEVTHRTLPADGKMLLHTIVRPTFKEGREKGLT 183
Query: 480 -YNEFRLSSDFMKEYIFPGGCLPSLSRI 506
+E + F+ IFPGG LPS+ +
Sbjct: 184 LTHELVHFTKFILAEIFPGGWLPSIPTV 211
|
Catalyzes the conversion of a double bond to a cyclopropane ring at the proximal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium tuberculosis (taxid: 1773) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|Q7U1J9|MMAA2_MYCBO Cyclopropane mycolic acid synthase MmaA2 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=cmaC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 81/211 (38%), Gaps = 65/211 (30%)
Query: 360 TNTLTQACRHISRHYDLSNELFCLFLDESLTYSCALFKVREVIFLGTIEVVK-------- 411
N LT + HYDLS++ F LFLD + TYSCA F+ RE + L ++ K
Sbjct: 2 VNDLTPHFEDVQAHYDLSDDFFRLFLDPTQTYSCAHFE-REDMTLEEAQIAKIDLALGKL 60
Query: 412 ---------RTGCKY---------------TGITLAEKQLKYAGIKVKEAD--LERN--- 442
GC + G+TL++ Q + E D L+R
Sbjct: 61 GLQPGMTLLDIGCGWGATMRRAIAQYDVNVVGLTLSKNQAAHVQKSFDEMDTPLDRRVLL 120
Query: 443 ----------DR--------SFGHEYMEEFFGCCESLIAKDGLFVLQFIS-IPDERYNEF 483
DR FGH+ +FF ++ DG+ +L I+ + ++ +
Sbjct: 121 AGWEQFNEPVDRIVSIGAFEHFGHDRHADFFARAHKILPPDGVLLLHTITGLTRQQMVDH 180
Query: 484 RLS--------SDFMKEYIFPGGCLPSLSRI 506
L F+ IFPGG P++ +
Sbjct: 181 GLPLTLWLARFLKFIATEIFPGGQPPTIEMV 211
|
Catalyzes the conversion of a double bond to a cis cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. MmaA2 also catalyzes the biosynthesis of the cis-cyclopropanated methoxymycolates. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium bovis (taxid: 1765) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|P0A9H7|CFA_ECOLI Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli (strain K12) GN=cfa PE=1 SV=2 | Back alignment and function description |
|---|
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 73/186 (39%), Gaps = 53/186 (28%)
Query: 373 HYDLSNELFCLFLDESLTYSCALFK---------------VREVIFLGTIEVVKRTGCKY 417
HYDL N+LF LD + YSCA +K + E + L V GC +
Sbjct: 119 HYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGW 178
Query: 418 ---------------TGITLAEKQLKYAGIKVKEADL--------ERNDR---------- 444
G+T++ +Q K A + + D+ + ND+
Sbjct: 179 GGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMF 238
Query: 445 -SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSL 503
G + + +F + + +G+F+L I N ++ +YIFP GCLPS+
Sbjct: 239 EHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLN----VDPWINKYIFPNGCLPSV 294
Query: 504 SRITSA 509
+I +
Sbjct: 295 RQIAQS 300
|
Transfers a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge. Escherichia coli (strain K12) (taxid: 83333) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 525 | ||||||
| 225433227 | 865 | PREDICTED: uncharacterized protein LOC10 | 0.792 | 0.480 | 0.546 | 1e-153 | |
| 296083708 | 898 | unnamed protein product [Vitis vinifera] | 0.792 | 0.463 | 0.536 | 1e-152 | |
| 359477758 | 865 | PREDICTED: uncharacterized protein LOC10 | 0.769 | 0.467 | 0.543 | 1e-150 | |
| 296083705 | 881 | unnamed protein product [Vitis vinifera] | 0.769 | 0.458 | 0.531 | 1e-148 | |
| 147791135 | 874 | hypothetical protein VITISV_025151 [Viti | 0.792 | 0.475 | 0.545 | 1e-147 | |
| 224107479 | 866 | predicted protein [Populus trichocarpa] | 0.792 | 0.480 | 0.531 | 1e-147 | |
| 50313464 | 865 | cyclopropane fatty acid synthase [Gossyp | 0.792 | 0.480 | 0.532 | 1e-147 | |
| 224099967 | 862 | predicted protein [Populus trichocarpa] | 0.788 | 0.480 | 0.536 | 1e-146 | |
| 255575825 | 865 | methyltransferase, putative [Ricinus com | 0.769 | 0.467 | 0.518 | 1e-142 | |
| 449458900 | 1611 | PREDICTED: uncharacterized protein LOC10 | 0.841 | 0.274 | 0.485 | 1e-135 |
| >gi|225433227|ref|XP_002281958.1| PREDICTED: uncharacterized protein LOC100249441 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 298/545 (54%), Positives = 351/545 (64%), Gaps = 129/545 (23%)
Query: 101 GCEWGSRNGLSS-CTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH-- 157
GCE S + CTV CGDGS+E ++ C+MA+HAPDAL ILGN+ATFDE R GAF
Sbjct: 235 GCEVVSVSTTDDGCTVFCGDGSQEMHDGCIMAVHAPDALNILGNKATFDEMRVLGAFQYV 294
Query: 158 --DIFLHCDKNSMPQNPAAWSAWSFLGSLDSK-----------NLGETSLPYLVTLNPDH 204
DIFLHCDKN MPQNPAAWSAW+FLG++D+K N+ +TS P+LVTLNP H
Sbjct: 295 SSDIFLHCDKNFMPQNPAAWSAWNFLGTIDNKVCLTYWLNVLQNIDQTSRPFLVTLNPPH 354
Query: 205 APEHTLLKWSTGPPVPFVAASKASLELGHIQGRRGIWFRGAYQGYGFHEDGLKDLSINSC 264
P+HTLLKWST P P VAASKASLEL HIQG+RGIWF GAYQGYGFHEDGLK + +
Sbjct: 355 TPDHTLLKWSTSHPFPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMVAAH 414
Query: 265 MTYGEECF-----------------------FPGRHDRGACL--LEEGGTMFTFEGTRKN 299
G+ C F G + CL LEEGGT++TFEG+RK
Sbjct: 415 GMLGKGCAVLNNPKHMVPSLLETGARLFVTRFLGHYISTGCLILLEEGGTIYTFEGSRKK 474
Query: 300 NHLKTVLRIHSPQFYWKI--------------------------------LIANRDLDSS 327
LK L+IH+PQFYWKI IANRDLDSS
Sbjct: 475 CLLKVSLKIHNPQFYWKIATQADLGLADAYINGDFSLVDKDEGLQNLFMIFIANRDLDSS 534
Query: 328 VSRLNQKRGWWSPILFTAGFASAKYFFRHISRTNTLTQACRHISRHYDLSNELFCLFLDE 387
+SRLN KRGWW+P+ FTAG ASA+YFF+H+SR NTLTQA R+ISRHYDLSNELF LFLDE
Sbjct: 535 LSRLNNKRGWWTPLFFTAGIASARYFFQHVSRQNTLTQARRNISRHYDLSNELFSLFLDE 594
Query: 388 SLTYSCALFKVR-------------------------EVIFLG------TIEVVKRTGCK 416
++TYSCA+FK EV+ +G IEVVKRTGCK
Sbjct: 595 TMTYSCAVFKTEGEDLKVAQLRKISLLIEKVRIDKKHEVLEIGCGWGSLAIEVVKRTGCK 654
Query: 417 YTGITLAEKQLKYAGIKVKEADLERNDR-------------------------SFGHEYM 451
YTGITL+E+QLK+A +KVKEA L+ N R + GHEYM
Sbjct: 655 YTGITLSEEQLKFAEMKVKEAGLQDNIRFLLCDYRQLSDSYKYDRIISCEMLEAVGHEYM 714
Query: 452 EEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMS 511
EEFFGCCES++A+DGL VLQFISIPDERY+E+R SSDF+KEYIFPGGCLPSLSR+T+AM+
Sbjct: 715 EEFFGCCESVLAEDGLLVLQFISIPDERYDEYRRSSDFIKEYIFPGGCLPSLSRVTTAMA 774
Query: 512 AASRL 516
A+SRL
Sbjct: 775 ASSRL 779
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296083708|emb|CBI23697.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 298/555 (53%), Positives = 351/555 (63%), Gaps = 139/555 (25%)
Query: 101 GCEWGSRNGLSS-CTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH-- 157
GCE S + CTV CGDGS+E ++ C+MA+HAPDAL ILGN+ATFDE R GAF
Sbjct: 258 GCEVVSVSTTDDGCTVFCGDGSQEMHDGCIMAVHAPDALNILGNKATFDEMRVLGAFQYV 317
Query: 158 --DIFLHCDKNSMPQNPAAWSAWSFLGSLDSK-----------NLGETSLPYLVTLNPDH 204
DIFLHCDKN MPQNPAAWSAW+FLG++D+K N+ +TS P+LVTLNP H
Sbjct: 318 SSDIFLHCDKNFMPQNPAAWSAWNFLGTIDNKVCLTYWLNVLQNIDQTSRPFLVTLNPPH 377
Query: 205 APEHTLLKWSTGPPVPFVAASKASLELGHIQGRRGIWFRGAYQGYGFHEDGLKDLSINSC 264
P+HTLLKWST P P VAASKASLEL HIQG+RGIWF GAYQGYGFHEDGLK + +
Sbjct: 378 TPDHTLLKWSTSHPFPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMVAAH 437
Query: 265 MTYGEECF-----------------------FPGRHDRGACL--LEEGGTMFTFEGTRKN 299
G+ C F G + CL LEEGGT++TFEG+RK
Sbjct: 438 GMLGKGCAVLNNPKHMVPSLLETGARLFVTRFLGHYISTGCLILLEEGGTIYTFEGSRKK 497
Query: 300 NHLKTVLRIHSPQFYWK------------------------------------------I 317
LK L+IH+PQFYWK I
Sbjct: 498 CLLKVSLKIHNPQFYWKAWPFHLHSLQIATQADLGLADAYINGDFSLVDKDEGLQNLFMI 557
Query: 318 LIANRDLDSSVSRLNQKRGWWSPILFTAGFASAKYFFRHISRTNTLTQACRHISRHYDLS 377
IANRDLDSS+SRLN KRGWW+P+ FTAG ASA+YFF+H+SR NTLTQA R+ISRHYDLS
Sbjct: 558 FIANRDLDSSLSRLNNKRGWWTPLFFTAGIASARYFFQHVSRQNTLTQARRNISRHYDLS 617
Query: 378 NELFCLFLDESLTYSCALFKVR-------------------------EVIFLG------T 406
NELF LFLDE++TYSCA+FK EV+ +G
Sbjct: 618 NELFSLFLDETMTYSCAVFKTEGEDLKVAQLRKISLLIEKVRIDKKHEVLEIGCGWGSLA 677
Query: 407 IEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERNDR---------------------- 444
IEVVKRTGCKYTGITL+E+QLK+A +KVKEA L+ N R
Sbjct: 678 IEVVKRTGCKYTGITLSEEQLKFAEMKVKEAGLQDNIRFLLCDYRQLSDSYKYDRIISCE 737
Query: 445 ---SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLP 501
+ GHEYMEEFFGCCES++A+DGL VLQFISIPDERY+E+R SSDF+KEYIFPGGCLP
Sbjct: 738 MLEAVGHEYMEEFFGCCESVLAEDGLLVLQFISIPDERYDEYRRSSDFIKEYIFPGGCLP 797
Query: 502 SLSRITSAMSAASRL 516
SLSR+T+AM+A+SRL
Sbjct: 798 SLSRVTTAMAASSRL 812
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359477758|ref|XP_002281923.2| PREDICTED: uncharacterized protein LOC100242555 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 289/532 (54%), Positives = 345/532 (64%), Gaps = 128/532 (24%)
Query: 113 CTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH----DIFLHCDKNSM 168
CT+ CGDGS+E ++ C+MA+HAPDAL ILGN+ATFDE R GAF DIFLH DKN M
Sbjct: 248 CTIFCGDGSQEMHDGCIMAVHAPDALNILGNKATFDEMRVLGAFQYVSSDIFLHRDKNFM 307
Query: 169 PQNPAAWSAWSFLGSLDSK-----------NLGETSLPYLVTLNPDHAPEHTLLKWSTGP 217
PQNPAAWSAW+FLG++++K N+ +TSLP+LVTLNP H P+HTLLKWST
Sbjct: 308 PQNPAAWSAWNFLGTIENKVCLSYWLNVLQNIDQTSLPFLVTLNPSHTPDHTLLKWSTSH 367
Query: 218 PVPFVAASKASLELGHIQGRRGIWFRGAYQGYGFHEDGLKDLSINSCMTYGEECF----- 272
PVP VAASKASLEL HIQG+RGIWF GAYQGYGFHEDGLK + + G+ C
Sbjct: 368 PVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMVAAHSILGKGCAVLNNP 427
Query: 273 ------------------FPGRHDRGAC--LLEEGGTMFTFEGTRKNNHLKTVLRIHSPQ 312
F G + C LLEEGGT++TFEG+ K LK L+IH+PQ
Sbjct: 428 KHMVPSLLETGARLFVTRFLGHYISTGCLILLEEGGTIYTFEGSGKKCLLKVALKIHNPQ 487
Query: 313 FYWK--------------------------------ILIANRDLDSSVSRLNQKRGWWSP 340
FYWK I IANRDLDSS+SRLN+KRGWW+P
Sbjct: 488 FYWKVATQADLGLADAYINGDFSLVDKDEGLQSLFMIFIANRDLDSSLSRLNKKRGWWTP 547
Query: 341 ILFTAGFASAKYFFRHISRTNTLTQACRHISRHYDLSNELFCLFLDESLTYSCALFKVR- 399
+ FTAG ASAKY+F+H+SR NTLTQA R++SRHYDLSNELF LFLDE++TYSCA+FK
Sbjct: 548 LFFTAGIASAKYYFQHVSRQNTLTQARRNVSRHYDLSNELFSLFLDETMTYSCAVFKTEG 607
Query: 400 ------------------------EVIFLG------TIEVVKRTGCKYTGITLAEKQLKY 429
EV+ +G IEVVK+TGCKYTGIT +++QLK+
Sbjct: 608 EDLKVAQLRKISLLIEKARIDKKHEVLEIGCGWGSLAIEVVKQTGCKYTGITPSKEQLKF 667
Query: 430 AGIKVKEADLERNDR-------------------------SFGHEYMEEFFGCCESLIAK 464
A +KVKEA L+ N R S GHEYMEEFFGCCES++A+
Sbjct: 668 AEMKVKEAGLQDNIRFLLCDYRQLPNSYKYDRIISCGMLESVGHEYMEEFFGCCESVLAE 727
Query: 465 DGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRL 516
DGL VLQFISIPDERY+E+R SSDF+KEYIFPGGCLPSLSR+T+AM+ ASRL
Sbjct: 728 DGLLVLQFISIPDERYDEYRRSSDFIKEYIFPGGCLPSLSRVTTAMATASRL 779
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296083705|emb|CBI23694.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 291/547 (53%), Positives = 345/547 (63%), Gaps = 143/547 (26%)
Query: 113 CTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH----DIFLHCDKNSM 168
CT+ CGDGS+E ++ C+MA+HAPDAL ILGN+ATFDE R GAF DIFLH DKN M
Sbjct: 249 CTIFCGDGSQEMHDGCIMAVHAPDALNILGNKATFDEMRVLGAFQYVSSDIFLHRDKNFM 308
Query: 169 PQNPAAWSAWSFLGSLDSK-----------NLGETSLPYLVTLNPDHAPEHTLLKWSTGP 217
PQNPAAWSAW+FLG++++K N+ +TSLP+LVTLNP H P+HTLLKWST
Sbjct: 309 PQNPAAWSAWNFLGTIENKVCLSYWLNVLQNIDQTSLPFLVTLNPSHTPDHTLLKWSTSH 368
Query: 218 PVPFVAASKASLELGHIQGRRGIWFRGAYQGYGFHEDGLKDLSIN--------------- 262
PVP VAASKASLEL HIQG+RGIWF GAYQGYGFHEDGLK I
Sbjct: 369 PVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKVAIIKHPCSQAGMVAAHSIL 428
Query: 263 ---------------SCMTYGEECF---FPGRHDRGACL--LEEGGTMFTFEGTRKNNHL 302
S + G F F G + CL LEEGGT++TFEG+ K L
Sbjct: 429 GKGCAVLNNPKHMVPSLLETGARLFVTRFLGHYISTGCLILLEEGGTIYTFEGSGKKCLL 488
Query: 303 KTVLRIHSPQFYWK-------------------------------------ILIANRDLD 325
K L+IH+PQFYWK I IANRDLD
Sbjct: 489 KVALKIHNPQFYWKESKKRIATQADLGLADAYINGDFSLVDKDEGLQSLFMIFIANRDLD 548
Query: 326 SSVSRLNQKRGWWSPILFTAGFASAKYFFRHISRTNTLTQACRHISRHYDLSNELFCLFL 385
SS+SRLN+KRGWW+P+ FTAG ASAKY+F+H+SR NTLTQA R++SRHYDLSNELF LFL
Sbjct: 549 SSLSRLNKKRGWWTPLFFTAGIASAKYYFQHVSRQNTLTQARRNVSRHYDLSNELFSLFL 608
Query: 386 DESLTYSCALFKVR-------------------------EVIFLG------TIEVVKRTG 414
DE++TYSCA+FK EV+ +G IEVVK+TG
Sbjct: 609 DETMTYSCAVFKTEGEDLKVAQLRKISLLIEKARIDKKHEVLEIGCGWGSLAIEVVKQTG 668
Query: 415 CKYTGITLAEKQLKYAGIKVKEADLERNDR-------------------------SFGHE 449
CKYTGIT +++QLK+A +KVKEA L+ N R S GHE
Sbjct: 669 CKYTGITPSKEQLKFAEMKVKEAGLQDNIRFLLCDYRQLPNSYKYDRIISCGMLESVGHE 728
Query: 450 YMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSA 509
YMEEFFGCCES++A+DGL VLQFISIPDERY+E+R SSDF+KEYIFPGGCLPSLSR+T+A
Sbjct: 729 YMEEFFGCCESVLAEDGLLVLQFISIPDERYDEYRRSSDFIKEYIFPGGCLPSLSRVTTA 788
Query: 510 MSAASRL 516
M+ ASRL
Sbjct: 789 MATASRL 795
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147791135|emb|CAN68017.1| hypothetical protein VITISV_025151 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 290/532 (54%), Positives = 342/532 (64%), Gaps = 116/532 (21%)
Query: 101 GCEWGSRNGLSS-CTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH-- 157
GCE S + CTV CGDGS+E ++ C+MA+HAPDAL ILGN+ATFDE R GAF
Sbjct: 235 GCEVVSVSTTDDGCTVFCGDGSQEMHDGCIMAVHAPDALNILGNKATFDEMRVLGAFQYV 294
Query: 158 --DIFLHCDKNSMPQNPAAWSAWSFLGSLDSK-----------NLGETSLPYLVTLNPDH 204
DIFLHCDKN MPQNPAAWSAW+FLG++D+K N+ +TS P+LVTLNP H
Sbjct: 295 SSDIFLHCDKNFMPQNPAAWSAWNFLGTIDNKVCLTYWLNVLQNIDQTSRPFLVTLNPPH 354
Query: 205 APEHTLLKWSTGPPVPFVAASKASLELGHIQGRRGIWFRGAYQGYGFHEDGLKDLSINSC 264
P+HTLLKWST P P VAASKASLEL HIQG+RGIWF GAYQGYGFHEDGLK + +
Sbjct: 355 TPDHTLLKWSTSHPFPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMVAAH 414
Query: 265 MTYGEECF-----------------------FPGRHDRGACL--LEEGGTMFTFEGTRK- 298
G+ C F G + CL LEEGGT++T EG+RK
Sbjct: 415 GMLGKGCAVLNNPKHMVPSLLETGARLFVTRFLGHYISTGCLILLEEGGTIYTVEGSRKK 474
Query: 299 ------------------NNHLKTVLRIHSPQFYWKILIANRDLDSSVSRLNQKRGWWSP 340
N V + Q + I IANRDLDSS+SRLN KRGWW+P
Sbjct: 475 CLLKIATQADLGLADAYINGDFSLVDKDEGLQNLFMIFIANRDLDSSLSRLNNKRGWWTP 534
Query: 341 ILFTAGFASAKYFFRHISRTNTLTQACRHISRHYDLSNELFCLFLDESLTYSCALFKVR- 399
+ FTAG ASAKYFF+H+SR NTLTQA R+ISRHYDLSNELF LFLDE++TYSCA+FK
Sbjct: 535 LFFTAGIASAKYFFQHVSRQNTLTQARRNISRHYDLSNELFSLFLDETMTYSCAVFKTER 594
Query: 400 ------------------------EVIFLG------TIEVVKRTGCKYTGITLAEKQLKY 429
EV+ +G IEVVK+TGCKYTGITL+E+QLK+
Sbjct: 595 EDLKVAQLRKISLLIEKVRIDKKHEVLEIGCGWGSLAIEVVKQTGCKYTGITLSEEQLKF 654
Query: 430 AGIKVKEADLERNDR-------------------------SFGHEYMEEFFGCCESLIAK 464
A +KVKEA L+ N R + GHEYMEEFFGCCES++A+
Sbjct: 655 AEMKVKEAGLQDNIRFLLCDYRQLSDSYKYDRIISCEMLEAVGHEYMEEFFGCCESVLAE 714
Query: 465 DGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRL 516
DGL VLQFISIPDERY+E+R SSDF+KEYIFPGGCLPSLSR+T+AM+AASRL
Sbjct: 715 DGLLVLQFISIPDERYDEYRRSSDFIKEYIFPGGCLPSLSRVTTAMAAASRL 766
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224107479|ref|XP_002314493.1| predicted protein [Populus trichocarpa] gi|222863533|gb|EEF00664.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 290/546 (53%), Positives = 350/546 (64%), Gaps = 130/546 (23%)
Query: 101 GCEWG--SRNGLSSCTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH- 157
GCE S + C V+C DG E Y+ C+MA+HAPDAL +LG QATFDETR GAF
Sbjct: 235 GCEVQAVSTTDEAGCAVLCIDGLLEMYSGCIMAVHAPDALGLLGEQATFDETRILGAFQY 294
Query: 158 ---DIFLHCDKNSMPQNPAAWSAWSFLGSLDSK-----------NLGETSLPYLVTLNPD 203
+IFLH DK MPQN AAWSAW+FLGS ++K N+ ET LP+LVTLNPD
Sbjct: 295 MYSEIFLHRDKTYMPQNSAAWSAWNFLGSTENKVCLTYWLNVLQNIDETGLPFLVTLNPD 354
Query: 204 HAPEHTLLKWSTGPPVPFVAASKASLELGHIQGRRGIWFRGAYQGYGFHEDGLKDLSINS 263
+AP+HTLLKWSTG PVP VAA+KASLEL HIQG+R IWF GAYQGYGF+EDGLK + +
Sbjct: 355 NAPDHTLLKWSTGRPVPSVAATKASLELDHIQGKRRIWFGGAYQGYGFYEDGLKSGMVAA 414
Query: 264 CMTYGEEC-----------------------FFPGRHDRGACL--LEEGGTMFTFEGTRK 298
G+ C F G H CL LE+GGT+F+FEGT K
Sbjct: 415 HGLLGKSCDILRNPKHMVPSMLETGARLFVTRFLGHHISTGCLTLLEDGGTVFSFEGTSK 474
Query: 299 NNHLKTVLRIHSPQFYWKI--------------------------------LIANRDLDS 326
LKTVL++H+PQFYWKI LI NRD D+
Sbjct: 475 KCSLKTVLKVHNPQFYWKIMTQADLGLADAYINGDFSFVDKDEGLINLFMILIVNRDADN 534
Query: 327 SVSRLNQKRGWWSPILFTAGFASAKYFFRHISRTNTLTQACRHISRHYDLSNELFCLFLD 386
S S+LN+KRGWW+P+LFTAG ASAK+F +H+SR NTLTQA R+ISRHYDLSNELF LFLD
Sbjct: 535 STSKLNKKRGWWTPLLFTAGIASAKFFIQHVSRQNTLTQARRNISRHYDLSNELFALFLD 594
Query: 387 ESLTYSCALFK----------VREVIFL-------------------GT--IEVVKRTGC 415
E++TYSCALFK +R++ L GT IEVV+RTGC
Sbjct: 595 ETMTYSCALFKKEDEDLKAAQIRKISLLIEKARVNKDHEVLEIGCGWGTLAIEVVQRTGC 654
Query: 416 KYTGITLAEKQLKYAGIKVKEADLERNDR-------------------------SFGHEY 450
KYTGITL+E+QLKYA +KVKEA L+ + + + GHEY
Sbjct: 655 KYTGITLSEEQLKYAELKVKEAGLQDSIKFHLCDYRQLPKTHKYDTIISCEMIEAVGHEY 714
Query: 451 MEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAM 510
MEEFFGCCES++A++GLFVLQFISIP+ERY+E+R SSDF+KEYIFPGGCLPSL+RITSAM
Sbjct: 715 MEEFFGCCESVLAENGLFVLQFISIPEERYDEYRKSSDFIKEYIFPGGCLPSLTRITSAM 774
Query: 511 SAASRL 516
+++SRL
Sbjct: 775 ASSSRL 780
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|50313464|gb|AAT74602.1| cyclopropane fatty acid synthase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 290/545 (53%), Positives = 343/545 (62%), Gaps = 129/545 (23%)
Query: 101 GCEWGS-RNGLSSCTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH-- 157
GCE S + CTV+CGD S E Y C+MA+HAP AL++LGNQAT+DE+ GAF
Sbjct: 235 GCEVHSVLSDAEGCTVLCGDDSHELYQGCIMAVHAPYALRLLGNQATYDESTVLGAFQYV 294
Query: 158 --DIFLHCDKNSMPQNPAAWSAWSFLGSLDS-----------KNLGETSLPYLVTLNPDH 204
DI+LH DKN MP+NPAAWSAW+FLGS D +NLGETSLP+LVTLNPD+
Sbjct: 295 YSDIYLHRDKNLMPKNPAAWSAWNFLGSTDKNVSLTYWLNVLQNLGETSLPFLVTLNPDY 354
Query: 205 APEHTLLKWSTGPPVPFVAASKASLELGHIQGRRGIWFRGAYQGYGFHEDGLKDLSINSC 264
P+HTLLKW TG PVP VAA+KASLEL IQG+RGIWF GAY GYGFHEDGLK I +
Sbjct: 355 TPKHTLLKWRTGHPVPSVAATKASLELDRIQGKRGIWFCGAYLGYGFHEDGLKAGMIAAN 414
Query: 265 MTYGEEC--------FFPGRHDRGA-----------------CLLEEGGTMFTFEGTRKN 299
G+ C P + GA LLEEGGTMFTFEGT
Sbjct: 415 GLLGKSCNILSNPKHMVPSLMETGARLFVTRFLSHFISTGCVILLEEGGTMFTFEGTSNK 474
Query: 300 NHLKTVLRIHSPQFYWK--------------------------------ILIANRDLDSS 327
LKTV+++HSP FYWK ILIANRDL SS
Sbjct: 475 CSLKTVIKVHSPHFYWKVMTEADLGLADSYINGDFSFVDKKDGLLNLVMILIANRDLISS 534
Query: 328 VSRLNQKRGWWSPILFTAGFASAKYFFRHISRTNTLTQACRHISRHYDLSNELFCLFLDE 387
S+L++KRGWW+P+LFTAG SAKYFF+H+ R NTLTQA R+ISRHYDLSN+LF LFLDE
Sbjct: 535 NSKLSKKRGWWTPLLFTAGLTSAKYFFKHVLRQNTLTQARRNISRHYDLSNDLFALFLDE 594
Query: 388 SLTYSCALFKVR-------------------------EVIFLG------TIEVVKRTGCK 416
++TYSCA+FK E++ +G IEVVKRTGCK
Sbjct: 595 TMTYSCAVFKTEDEDLKDAQHRKISLLIEKARIDSKHEILEIGCGWXSLAIEVVKRTGCK 654
Query: 417 YTGITLAEKQLKYAGIKVKEADLERNDR-------------------------SFGHEYM 451
YTGITL+E+QLK A +VKEA L+ N R + GHEYM
Sbjct: 655 YTGITLSEEQLKLAEKRVKEAGLQENIRFQLCDYRQLPSTYKYDRIISCEMIEAVGHEYM 714
Query: 452 EEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMS 511
E+FFGCCES++A DGL VLQFISIP+ERYNE+R SSDF+KEYIFPGGCLPSL+RIT+AM+
Sbjct: 715 EDFFGCCESVLADDGLLVLQFISIPEERYNEYRRSSDFIKEYIFPGGCLPSLARITTAMN 774
Query: 512 AASRL 516
AAS+L
Sbjct: 775 AASKL 779
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224099967|ref|XP_002311690.1| predicted protein [Populus trichocarpa] gi|222851510|gb|EEE89057.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 292/544 (53%), Positives = 348/544 (63%), Gaps = 130/544 (23%)
Query: 101 GCEWGSRNGLSSCTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH--- 157
GCE + + ++ V+C DG E Y+ C+MA+HAPDAL +LG QATFDETR GAF
Sbjct: 235 GCEIQAVS--TTDEVLCRDGLLEMYSGCIMAVHAPDALALLGKQATFDETRILGAFQYMY 292
Query: 158 -DIFLHCDKNSMPQNPAAWSAWSFLGSLDSK-----------NLGETSLPYLVTLNPDHA 205
DIFLH DK MPQN AAWSAW+FLGS D+K N+ ET LP+LVTLNPDHA
Sbjct: 293 SDIFLHRDKKFMPQNSAAWSAWNFLGSTDNKVCLTYWLNVLQNIDETGLPFLVTLNPDHA 352
Query: 206 PEHTLLKWSTGPPVPFVAASKASLELGHIQGRRGIWFRGAYQGYGFHEDGLKD------- 258
P+HTL+KWSTG PVP VAA+KASLEL HIQG+R IWF GAYQGYGFHEDGLK
Sbjct: 353 PDHTLVKWSTGHPVPSVAATKASLELDHIQGKRRIWFCGAYQGYGFHEDGLKSGMVAAHG 412
Query: 259 LSINSC-------------MTYGEECF---FPGRHDRGAC--LLEEGGTMFTFEGTRKNN 300
L NSC + G F F G + C LLEEGGT+F+FEGT K
Sbjct: 413 LLGNSCAILSNPKHMAPSMLETGARLFVTRFLGHYISTGCLILLEEGGTVFSFEGTSKKC 472
Query: 301 HLKTVLRIHSPQFYWK--------------------------------ILIANRDLDSSV 328
LKTVL++H+PQFYWK ILI NRD + S
Sbjct: 473 SLKTVLKVHNPQFYWKIMTQADLGLADAYINGDFSFVNKDEGLLNLFMILIVNRDANKSA 532
Query: 329 SRLNQKRGWWSPILFTAGFASAKYFFRHISRTNTLTQACRHISRHYDLSNELFCLFLDES 388
S+LN+KRGWW+P+LFTAG ASAK+F +HISR NTLTQA R+ISRHYDLSNELF LFLDE+
Sbjct: 533 SKLNKKRGWWTPLLFTAGIASAKFFIQHISRQNTLTQARRNISRHYDLSNELFALFLDET 592
Query: 389 LTYSCALFKVR-------------------------EVIFLG------TIEVVKRTGCKY 417
+TYSC +FK E++ +G IE V+RTGCKY
Sbjct: 593 MTYSCGVFKTEDEDLKDAQMRKISLLIEKARISKDHEILEIGCGWGTLAIEAVQRTGCKY 652
Query: 418 TGITLAEKQLKYAGIKVKEADLE-----------------RNDR--------SFGHEYME 452
TGITL+E+QLKYA +KVKEA L+ + DR + GHEYME
Sbjct: 653 TGITLSEEQLKYAEMKVKEAGLQDRIAFHLCDYRQLPKTHKYDRIISCEMIEAVGHEYME 712
Query: 453 EFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSA 512
EFFGCCES++A++GL VLQFISIP+ERY+E+R SSDF+KEYIFPGGCLPSL+RITSAM+A
Sbjct: 713 EFFGCCESVLAENGLLVLQFISIPEERYDEYRQSSDFIKEYIFPGGCLPSLTRITSAMAA 772
Query: 513 ASRL 516
+SRL
Sbjct: 773 SSRL 776
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255575825|ref|XP_002528810.1| methyltransferase, putative [Ricinus communis] gi|223531722|gb|EEF33544.1| methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 276/532 (51%), Positives = 337/532 (63%), Gaps = 128/532 (24%)
Query: 113 CTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH----DIFLHCDKNSM 168
CTV+CGDGS E Y+ C++ +HAPDALK+LGNQATFDE R GAF +IFLH DK M
Sbjct: 248 CTVLCGDGSEEQYSRCIIGVHAPDALKLLGNQATFDEKRVLGAFQYLYSEIFLHRDKKFM 307
Query: 169 PQNPAAWSAWSFLGSLDSK-----------NLGETSLPYLVTLNPDHAPEHTLLKWSTGP 217
PQ P AWSAW+FLG+ D+K NLGET+LP+LVTLNPDH P++TLLKW+TG
Sbjct: 308 PQKPTAWSAWNFLGNTDNKVCLTYWLNVLQNLGETNLPFLVTLNPDHTPDNTLLKWTTGH 367
Query: 218 PVPFVAASKASLELGHIQGRRGIWFRGAYQGYGFHEDGLKDLSINSCMTYGEEC------ 271
PVP VAASKASLEL HIQGRRG+WF GAYQGYGFHEDGLK + + + C
Sbjct: 368 PVPSVAASKASLELEHIQGRRGLWFCGAYQGYGFHEDGLKSGMVAAHSLLEKSCAILSNP 427
Query: 272 --FFPGRHDRGA-----------------CLLEEGGTMFTFEGTRKNNHLKTVLRIHSPQ 312
P + GA LLEEGGT+FTFEGT K +TV+++H+PQ
Sbjct: 428 KHMVPSLLETGARLFVSRFLGQYISTGRVILLEEGGTIFTFEGTAKKCFSQTVMKVHNPQ 487
Query: 313 FYWKI--------------------------------LIANRDLDSSVSRLNQKRGWWSP 340
FYWKI LI NRD + S LN+++GWW+P
Sbjct: 488 FYWKIMTQADLGLADAYINGDFSFVDKDEGLLNLFMVLIVNRDANKPESELNKRKGWWTP 547
Query: 341 ILFTAGFASAKYFFRHISRTNTLTQACRHISRHYDLSNELFCLFLDESLTYSCALFKVR- 399
+LFTA ASAK+FFRH+SR N+LTQA R+ISRHYDLSN+LF LFLDE++TYS A+FK
Sbjct: 548 MLFTASIASAKFFFRHVSRQNSLTQARRNISRHYDLSNDLFSLFLDETMTYSSAVFKTED 607
Query: 400 ------------------------EVIFLG------TIEVVKRTGCKYTGITLAEKQLKY 429
E++ +G IEVVKRTGCKYTGITL+E+QLKY
Sbjct: 608 EDLKAAQMRKISLLIGKARINKEHEILEIGCGWGTLAIEVVKRTGCKYTGITLSEEQLKY 667
Query: 430 AGIKVKEADLERNDR-------------------------SFGHEYMEEFFGCCESLIAK 464
A +VKEA L+ + R + GHEYME+FF CCES++AK
Sbjct: 668 AEERVKEAGLQDSIRFQLRDYRQLPDTCKYDRIISCEMIEAVGHEYMEKFFSCCESVLAK 727
Query: 465 DGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRL 516
DG+ VLQFISIP+ERY E+R SSDF+KEYIFPGGCLPSL+RIT+AM+A++RL
Sbjct: 728 DGVIVLQFISIPEERYEEYRRSSDFIKEYIFPGGCLPSLTRITTAMAASTRL 779
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458900|ref|XP_004147184.1| PREDICTED: uncharacterized protein LOC101213850 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 284/585 (48%), Positives = 350/585 (59%), Gaps = 143/585 (24%)
Query: 62 LTIRGYVVTY-PNMMELFESLGVDMEISDMSFSLS-LDKGQGCEWGSRNGLSSCTVVCGD 119
LT++G +Y + E+ ES G + S S+S +DKG C V GD
Sbjct: 981 LTVKGRSHSYVKKVQEVLESHGCQIRTSSEVNSISTMDKG-------------CKVSYGD 1027
Query: 120 GSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH----DIFLHCDKNSMPQNPAAW 175
G +E +++C++A HAPD L+ILGN+AT DE R GAF DIFLH DKN MPQNPAAW
Sbjct: 1028 GLQEMFDACIIATHAPDTLRILGNEATSDELRVLGAFQYAYSDIFLHRDKNLMPQNPAAW 1087
Query: 176 SAWSFLGSLDSK-----------NLGETSLPYLVTLNPDHAPEHTLLKWSTGPPVPFVAA 224
SAW+FLG+ D K NLGET P+LVTLNPD P++ LLKWSTG P+P VAA
Sbjct: 1088 SAWNFLGNTDKKVCLTYWLNVLQNLGETGPPFLVTLNPDKEPKNILLKWSTGHPIPSVAA 1147
Query: 225 SKASLELGHIQGRRGIWFRGAYQGYGFHEDGLKDLSINSCMTYGEECFF--------PGR 276
SKAS E IQG R IWF GAYQGYGFHEDGLK + + G P
Sbjct: 1148 SKASNEFHSIQGNRRIWFCGAYQGYGFHEDGLKAGIVAAQNLLGNSLTLLSNPKHMAPSL 1207
Query: 277 HDRGA-----------------CLLEEGGTMFTFEGTRKNNHLKTVLRIHSPQFYWKIL- 318
D GA L+EEGGT+FTFEGT K K V+++HSPQFYWKI+
Sbjct: 1208 VDTGARLFVTRFLGQYITSGSLTLIEEGGTIFTFEGTDKKCLPKVVVKVHSPQFYWKIMT 1267
Query: 319 -------------------------------IANRDLDSSVSRLNQKRGWWSPILFTAGF 347
IA+RD +SS+++ +KRGWW+P LFTA
Sbjct: 1268 RADLGLADAYINGDFSFVDKDEGLLNFFLIIIASRDTNSSIAKQKKKRGWWTPPLFTACI 1327
Query: 348 ASAKYFFRHISRTNTLTQACRHISRHYDLSNELFCLFLDESLTYSCALFK---------- 397
ASAKYFF+H SR NTLTQA R+ISRHYDLSNELF LFLD+++TYSCA+FK
Sbjct: 1328 ASAKYFFQHASRQNTLTQARRNISRHYDLSNELFSLFLDDTMTYSCAIFKGENEDLKVAQ 1387
Query: 398 VREVIFLG---------------------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE 436
+R++ L IE+VK+TGC YTGITL+E+QLKYA +VK+
Sbjct: 1388 MRKISLLIEKARINKNHHVLEIGCGWGSLAIEIVKKTGCHYTGITLSEEQLKYAEKRVKD 1447
Query: 437 ADL-----------------ERNDR--------SFGHEYMEEFFGCCESLIAKDGLFVLQ 471
A+L E+ DR + GHE+ME+FFG CES++A++GLFVLQ
Sbjct: 1448 ANLQDRIRFLLCDYRKLPSTEKYDRIISCEMIEAVGHEFMEDFFGSCESVLAENGLFVLQ 1507
Query: 472 FISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRL 516
FISIPDERYNE+RLSSDF+KEYIFPGGCLP LSR+T+AM+ ASRL
Sbjct: 1508 FISIPDERYNEYRLSSDFIKEYIFPGGCLPCLSRLTTAMANASRL 1552
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 525 | ||||||
| TAIR|locus:2088070 | 867 | AT3G23530 [Arabidopsis thalian | 0.285 | 0.173 | 0.586 | 2.7e-131 | |
| TAIR|locus:2088712 | 867 | AT3G23510 [Arabidopsis thalian | 0.285 | 0.173 | 0.586 | 2.5e-118 | |
| TAIR|locus:2088717 | 461 | AT3G23470 [Arabidopsis thalian | 0.222 | 0.253 | 0.453 | 5e-52 | |
| TAIR|locus:2090915 | 305 | AT3G23460 [Arabidopsis thalian | 0.148 | 0.255 | 0.555 | 1.6e-19 | |
| UNIPROTKB|Q5LTD2 | 447 | SPO1482 "Uncharacterized prote | 0.259 | 0.304 | 0.356 | 2.5e-16 | |
| TIGR_CMR|SPO_1482 | 447 | SPO_1482 "conserved hypothetic | 0.259 | 0.304 | 0.356 | 2.5e-16 | |
| TIGR_CMR|GSU_2329 | 421 | GSU_2329 "cyclopropane-fatty-a | 0.131 | 0.163 | 0.422 | 5.2e-16 | |
| UNIPROTKB|Q0C192 | 438 | HNE_1797 "Putative uncharacter | 0.28 | 0.335 | 0.327 | 9.3e-16 | |
| TIGR_CMR|SO_3379 | 418 | SO_3379 "cyclopropane-fatty-ac | 0.203 | 0.255 | 0.354 | 4.3e-15 | |
| DICTYBASE|DDB_G0283847 | 430 | DDB_G0283847 "cyclopropane fat | 0.133 | 0.162 | 0.357 | 5.2e-14 |
| TAIR|locus:2088070 AT3G23530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 481 (174.4 bits), Expect = 2.7e-131, Sum P(5) = 2.7e-131
Identities = 98/167 (58%), Positives = 117/167 (70%)
Query: 106 SRNGLSSCTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH----DIFL 161
S NG TV GDGS+E ++ C++A+HAPDAL++LG + TFDE+R GAF DI+L
Sbjct: 245 SENGC--VTVTSGDGSKEVFDRCILAMHAPDALRLLGEEVTFDESRVLGAFQYVYSDIYL 302
Query: 162 HCDKNSMPQNPAAWSAWSFLGSLDSK-----------NLGETSLPYLVTLNPDHAPEHTL 210
H D + MP+N AAWSAW+FLGS + K NLGE S P+ VTLNPD P+ TL
Sbjct: 303 HHDIDLMPRNQAAWSAWNFLGSTEKKVCVTYWLNILQNLGENSEPFFVTLNPDETPKKTL 362
Query: 211 LKWSTGPPVPFVAASKASLELGHIQGRRGIWFRGAYQGYGFHEDGLK 257
LKW+TG PVP VAA AS EL IQG+R IWF GAYQGYGFHEDGLK
Sbjct: 363 LKWTTGHPVPSVAAWTASQELHKIQGKRNIWFCGAYQGYGFHEDGLK 409
|
|
| TAIR|locus:2088712 AT3G23510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 480 (174.0 bits), Expect = 2.5e-118, Sum P(4) = 2.5e-118
Identities = 98/167 (58%), Positives = 116/167 (69%)
Query: 106 SRNGLSSCTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH----DIFL 161
S NG TV GDGS E ++ C++A+HAPDAL++LG + TFDE+R GAF DI+L
Sbjct: 245 SENGC--VTVTSGDGSEEVFDRCILAMHAPDALRLLGEEVTFDESRVLGAFQYVYSDIYL 302
Query: 162 HCDKNSMPQNPAAWSAWSFLGSLDSK-----------NLGETSLPYLVTLNPDHAPEHTL 210
H D + MP+N AAWSAW+FLGS + K NLGE S P+ VTLNPD P+ L
Sbjct: 303 HHDIDLMPRNKAAWSAWNFLGSTEKKVCVTYWLNILQNLGENSEPFFVTLNPDETPKKAL 362
Query: 211 LKWSTGPPVPFVAASKASLELGHIQGRRGIWFRGAYQGYGFHEDGLK 257
LKW+TG PVP VAAS AS EL IQG+R IWF GAYQGYGFHEDGLK
Sbjct: 363 LKWTTGHPVPSVAASIASQELHQIQGKRNIWFCGAYQGYGFHEDGLK 409
|
|
| TAIR|locus:2088717 AT3G23470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 264 (98.0 bits), Expect = 5.0e-52, Sum P(3) = 5.0e-52
Identities = 59/130 (45%), Positives = 84/130 (64%)
Query: 387 ESLTYSCALFKVREVIFLGTIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERNDRSF 446
E L Y+ A KV+E G I + C Y ++ A K + ++ EA
Sbjct: 254 EQLKYAKA--KVKEAGLQGRITFML---CDYRQLSDARKYDRIIACEMIEA--------V 300
Query: 447 GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRI 506
GHE+M++FF CCE +A++G+FVLQF +IP+ Y+E RL+S F+ EYIFPGGCLPSL+R+
Sbjct: 301 GHEFMDKFFSCCEDALAENGIFVLQFTAIPEALYDESRLTSGFITEYIFPGGCLPSLARV 360
Query: 507 TSAMSAASRL 516
TSAM+++SRL
Sbjct: 361 TSAMASSSRL 370
|
|
| TAIR|locus:2090915 AT3G23460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 240 (89.5 bits), Expect = 1.6e-19, P = 1.6e-19
Identities = 45/81 (55%), Positives = 65/81 (80%)
Query: 317 ILIANRDLDSSVSRLNQKRGWWSPILFTAGFASAKYFFRHISRTNTLTQACRHISRHYDL 376
ILIA+++L+S+++ +KRG W+PI T G +SAK+F +H+ R N LTQA R+ISRHYDL
Sbjct: 104 ILIASKELNSNLA---EKRGRWTPIFLTTGLSSAKHFLKHLYRQNNLTQARRNISRHYDL 160
Query: 377 SNELFCLFLDESLTYSCALFK 397
SNELF +FLD++++YS +FK
Sbjct: 161 SNELFTIFLDDTMSYSSGVFK 181
|
|
| UNIPROTKB|Q5LTD2 SPO1482 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 201 (75.8 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 56/157 (35%), Positives = 77/157 (49%)
Query: 118 GDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAF----HDIFLHCDKNSMPQNPA 173
GD R ++ ++A H+ LKILG AT E G+ + LHCD MP+ A
Sbjct: 254 GDAQRATFDELILACHSDQTLKILGANATKAEASALGSIRYQANKAVLHCDTGQMPRRRA 313
Query: 174 AWSAWSFLGSLDSKNLGET-----------SLPYLVTLNPDHAPEHTLLKWSTGP---PV 219
WS+WS+ S D ++G T S P VTLNP P H+ + PV
Sbjct: 314 CWSSWSYR-SQDG-DIGVTYWMNKLQGIPESDPLFVTLNPSK-PIHSEAVYDEVQFHHPV 370
Query: 220 PFVAASKASLELGHIQGRRGIWFRGAYQGYGFHEDGL 256
AA KA ++ +QG+ WF GA+ +GFHEDG+
Sbjct: 371 FDKAALKAQQDIRQMQGQNHTWFAGAWNRHGFHEDGI 407
|
|
| TIGR_CMR|SPO_1482 SPO_1482 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 201 (75.8 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 56/157 (35%), Positives = 77/157 (49%)
Query: 118 GDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAF----HDIFLHCDKNSMPQNPA 173
GD R ++ ++A H+ LKILG AT E G+ + LHCD MP+ A
Sbjct: 254 GDAQRATFDELILACHSDQTLKILGANATKAEASALGSIRYQANKAVLHCDTGQMPRRRA 313
Query: 174 AWSAWSFLGSLDSKNLGET-----------SLPYLVTLNPDHAPEHTLLKWSTGP---PV 219
WS+WS+ S D ++G T S P VTLNP P H+ + PV
Sbjct: 314 CWSSWSYR-SQDG-DIGVTYWMNKLQGIPESDPLFVTLNPSK-PIHSEAVYDEVQFHHPV 370
Query: 220 PFVAASKASLELGHIQGRRGIWFRGAYQGYGFHEDGL 256
AA KA ++ +QG+ WF GA+ +GFHEDG+
Sbjct: 371 FDKAALKAQQDIRQMQGQNHTWFAGAWNRHGFHEDGI 407
|
|
| TIGR_CMR|GSU_2329 GSU_2329 "cyclopropane-fatty-acyl-phospholipid synthase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 155 (59.6 bits), Expect = 5.2e-16, Sum P(3) = 5.2e-16
Identities = 30/71 (42%), Positives = 45/71 (63%)
Query: 447 GHEYMEEFFG-CCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSR 505
GH ++ FF CC L A DG+ ++Q I++PD Y+ + + DF+ YIFPGGC PS
Sbjct: 275 GHRHLPAFFAVCCRRLKA-DGMGLIQAITVPDRIYDRYLKTPDFINRYIFPGGCCPSPGA 333
Query: 506 ITSAMSAASRL 516
+ A++AA+ L
Sbjct: 334 MARAVAAATDL 344
|
|
| UNIPROTKB|Q0C192 HNE_1797 "Putative uncharacterized protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] | Back alignment and assigned GO terms |
|---|
Score = 182 (69.1 bits), Expect = 9.3e-16, Sum P(2) = 9.3e-16
Identities = 53/162 (32%), Positives = 82/162 (50%)
Query: 111 SSCTVVCGDGSREFYNSCVMALHAPDALKILGNQ---ATFDETRTGGAFHDIFLHCDKNS 167
S +V +G E ++ ++A H+ AL ++ ++ F + I+LH D
Sbjct: 237 SRTSVHLDNGHTEIFDEVILAAHSNQALALVQDRYEDQAFLLRSVRYRPNSIWLHRDPAL 296
Query: 168 MPQNPAAWSAWSFL---GS---LD---SKNLG-ETSLPYLVTLNPDHAP--EHTLLKWST 215
MP+ +AW++W+ L G L ++ G ++S P +TLNP P E+T L ++
Sbjct: 297 MPKRKSAWASWNVLKQEGDDICLTYWMNRLQGIDSSRPLFITLNPATPPKEEYTFLHYTL 356
Query: 216 GPPVPFVAASKASLELGHIQGRRGIWFRGAYQGYGFHEDGLK 257
P AA A L IQG+ +WF GA+ G GFHEDGLK
Sbjct: 357 DHPQFDTAAEAAVRGLNRIQGKDNLWFAGAWMGRGFHEDGLK 398
|
|
| TIGR_CMR|SO_3379 SO_3379 "cyclopropane-fatty-acyl-phospholipid synthase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 179 (68.1 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 39/110 (35%), Positives = 64/110 (58%)
Query: 410 VKRTGCKYTGITLAEKQLKYAGIKVKEADLERNDRSFGHEYMEEFFGCCESLIAKDGLFV 469
V+R G + L E +G + +E + + GHEY+ FF ESL+ +G +
Sbjct: 233 VEREGLSDSVTLLTEDYRNLSGQYDRLVSIEMIE-AVGHEYLPGFFKKLESLLKPEGRML 291
Query: 470 LQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAAS--RLW 517
LQ I+I D+RY+ +R S DF++ YIFPGGCLPS+ ++ ++ + ++W
Sbjct: 292 LQAITISDQRYDSYRKSVDFIQRYIFPGGCLPSVQQMVGHLAKRTDMQVW 341
|
|
| DICTYBASE|DDB_G0283847 DDB_G0283847 "cyclopropane fatty acid synthase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 135 (52.6 bits), Expect = 5.2e-14, Sum P(2) = 5.2e-14
Identities = 25/70 (35%), Positives = 44/70 (62%)
Query: 447 GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRI 506
G+E + +F E L+ +G+ VLQFI+ D+ + + DF+++YIFPGG LPS++ +
Sbjct: 280 GYENYKTYFQSVERLLKPNGVLVLQFITFKDQDFEGLKKRCDFIQKYIFPGGLLPSITAV 339
Query: 507 TSAMSAASRL 516
++ + S L
Sbjct: 340 INSATENSNL 349
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 525 | |||
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 4e-30 | |
| pfam02353 | 273 | pfam02353, CMAS, Mycolic acid cyclopropane synthet | 4e-26 | |
| COG2907 | 447 | COG2907, COG2907, Predicted NAD/FAD-binding protei | 1e-15 | |
| PRK11705 | 383 | PRK11705, PRK11705, cyclopropane fatty acyl phosph | 4e-12 | |
| COG2907 | 447 | COG2907, COG2907, Predicted NAD/FAD-binding protei | 9e-05 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 4e-30
Identities = 65/218 (29%), Positives = 93/218 (42%), Gaps = 57/218 (26%)
Query: 351 KYFFRHISRTNTLTQACRHISRHYDLSNELFCLFLDESLTYSCALF-------------K 397
+ R + ++ +A +I HYDLSN+ + LFLD S+TYSCA F K
Sbjct: 1 RIMLRRLLNRHSKRRAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAK 60
Query: 398 VRE------------VIFLGT------IEVVKRTGCKYTGITLAEKQLKYAGIKVKEADL 439
+ ++ +G I + G G+TL+E+QL YA ++ L
Sbjct: 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL 120
Query: 440 ERN---------------DR--------SFGHEYMEEFFGCCESLIAKDGLFVLQFISIP 476
E N DR G E ++FF +L+ G +L I+ P
Sbjct: 121 EDNVEVRLQDYRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGP 180
Query: 477 DERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAAS 514
D EFR DF+ +YIFPGG LPS+S I S A
Sbjct: 181 D---QEFRRFPDFIDKYIFPGGELPSISEILELASEAG 215
|
Length = 283 |
| >gnl|CDD|216988 pfam02353, CMAS, Mycolic acid cyclopropane synthetase | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 4e-26
Identities = 58/206 (28%), Positives = 83/206 (40%), Gaps = 55/206 (26%)
Query: 363 LTQACRHISRHYDLSNELFCLFLDESLTYSCALF-------------KVR---------- 399
+ +I HYDLSN+ F LFLD ++TYSCA F K+
Sbjct: 3 KRRDFENIQAHYDLSNDFFALFLDPTMTYSCAYFERPDMTLEEAQQAKLDLILDKLGLKP 62
Query: 400 --EVIFLGT------IEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN--------- 442
++ +G +R G+TL++ Q K+A +V L+R
Sbjct: 63 GMTLLDIGCGWGGLMRRAAERYDVNVVGLTLSKNQYKHARQRVAAEGLQRKVEVLLQDYR 122
Query: 443 ------DR--------SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFR-LSS 487
DR GHE + FF +L+ GL +L I+ R L
Sbjct: 123 DFDEPFDRIVSVGMFEHVGHENYDTFFKKLYNLLPPGGLMLLHTITGLHPDETSERGLPL 182
Query: 488 DFMKEYIFPGGCLPSLSRITSAMSAA 513
F+ +YIFPGG LPS+S I + S A
Sbjct: 183 KFIDKYIFPGGELPSISMIVESSSEA 208
|
This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyze the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <=> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. Length = 273 |
| >gnl|CDD|225459 COG2907, COG2907, Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 1e-15
Identities = 54/162 (33%), Positives = 82/162 (50%), Gaps = 22/162 (13%)
Query: 115 VVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAF----HDIFLHCDKNSMPQ 170
+V DG +++ V+A H AL +L ++ + +E + GA + LH D + MP+
Sbjct: 252 LVNADGESRRFDAVVIATHPDQALALL-DEPSPEERQLLGALRYSANTAVLHTDASLMPR 310
Query: 171 NPAAWSAWSFLGSLDSKNLGETSL--------------PYLVTLN--PDHAPEHTLLKWS 214
AW++W++LG++ + L + SL Y VTLN P P H + + +
Sbjct: 311 RLRAWASWNYLGTVQWE-LCQGSLTYWMNRLQALISVRDYFVTLNNRPWVDPAHVIAERT 369
Query: 215 TGPPVPFVAASKASLELGHIQGRRGIWFRGAYQGYGFHEDGL 256
P+ A +A EL +QG R WF GAY G GFHEDGL
Sbjct: 370 YPHPLFDPEAVRAQQELWALQGARRTWFCGAYFGRGFHEDGL 411
|
Length = 447 |
| >gnl|CDD|183282 PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 4e-12
Identities = 45/189 (23%), Positives = 70/189 (37%), Gaps = 55/189 (29%)
Query: 372 RHYDLSNELFCLFLDESLTYSCALFK---------------VREVIFL------------ 404
HYDL N+LF LD + YSC +K + + L
Sbjct: 118 EHYDLGNDLFEAMLDPRMQYSCGYWKDADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCG 177
Query: 405 --GTIE-VVKRTGCKYTGITLAEKQLKYAGIKVKEADLE------RN-DRSF-------- 446
G + G G+T++ +Q K A + +E R+ + F
Sbjct: 178 WGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSVGM 237
Query: 447 ----GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSD-FMKEYIFPGGCLP 501
G + +F + DGLF+L I N+ + D ++ +YIFP GCLP
Sbjct: 238 FEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS-----NKTDTNVDPWINKYIFPNGCLP 292
Query: 502 SLSRITSAM 510
S+ +I A
Sbjct: 293 SVRQIAQAS 301
|
Length = 383 |
| >gnl|CDD|225459 COG2907, COG2907, Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 9e-05
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 20/121 (16%)
Query: 69 VTYPNMMELFESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGD-GSREFYNS 127
TYPN+ LF+++GVD + S MSFS+SLD G G E+ GL+ + F
Sbjct: 70 RTYPNLTRLFKTIGVDTKASFMSFSVSLDMG-GLEYSGLTGLAGLLAQKRNLLRPRFPCM 128
Query: 128 CV------MALHAPDALKILGNQ---ATFDETRTGGAFHDIFLHCDKNSMPQNPAAWSAW 178
+ AP G+ + G AF + FL P + W
Sbjct: 129 LAEILRFYRSDLAPSDNAGQGDTTLAQYLKQRNFGRAFVEDFLQ---------PLVAAIW 179
Query: 179 S 179
S
Sbjct: 180 S 180
|
Length = 447 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 525 | |||
| COG2907 | 447 | Predicted NAD/FAD-binding protein [General functio | 100.0 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 100.0 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 100.0 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.97 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.44 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.4 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.38 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.21 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.06 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.03 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.03 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 98.97 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 98.93 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 98.89 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 98.85 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.79 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 98.73 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 98.69 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 98.66 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 98.65 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 98.65 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.64 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.6 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 98.6 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 98.59 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.58 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 98.53 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 98.53 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 98.5 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 98.46 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 98.45 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 98.45 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.42 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 98.41 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 98.41 | |
| TIGR00562 | 462 | proto_IX_ox protoporphyrinogen oxidase. This prote | 98.4 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 98.38 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 98.35 | |
| PLN02576 | 496 | protoporphyrinogen oxidase | 98.35 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.26 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 98.22 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.21 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.21 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.2 | |
| PF01593 | 450 | Amino_oxidase: Flavin containing amine oxidoreduct | 98.2 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.2 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.18 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.13 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 98.12 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.12 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.11 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.09 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 98.08 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.07 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.05 | |
| PRK11883 | 451 | protoporphyrinogen oxidase; Reviewed | 98.04 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.02 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.01 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 97.99 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 97.98 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 97.97 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 97.97 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 97.96 | |
| PLN02476 | 278 | O-methyltransferase | 97.96 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 97.95 | |
| PRK12416 | 463 | protoporphyrinogen oxidase; Provisional | 97.93 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 97.88 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 97.84 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 97.84 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 97.81 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 97.81 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.76 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 97.75 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 97.73 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 97.71 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 97.71 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 97.7 | |
| TIGR03467 | 419 | HpnE squalene-associated FAD-dependent desaturase. | 97.67 | |
| PRK04266 | 226 | fibrillarin; Provisional | 97.67 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 97.65 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 97.64 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 97.64 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 97.64 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 97.61 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 97.61 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 97.55 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 97.53 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 97.52 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 97.52 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 97.51 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 97.5 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 97.49 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 97.48 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 97.44 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 97.43 | |
| PLN02268 | 435 | probable polyamine oxidase | 97.41 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 97.38 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 97.35 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 97.34 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 97.34 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 97.34 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 97.28 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 97.28 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 97.27 | |
| TIGR02732 | 474 | zeta_caro_desat carotene 7,8-desaturase. Carotene | 97.26 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 97.21 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 97.21 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 97.19 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 97.18 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 97.17 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 97.14 | |
| PLN02612 | 567 | phytoene desaturase | 97.14 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 97.11 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 97.09 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.08 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.06 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 97.02 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 97.0 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 97.0 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 96.99 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 96.97 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 96.95 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 96.93 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 96.91 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 96.9 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 96.89 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.89 | |
| PLN02366 | 308 | spermidine synthase | 96.89 | |
| PLN02529 | 738 | lysine-specific histone demethylase 1 | 96.87 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 96.87 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.85 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 96.84 | |
| PLN02487 | 569 | zeta-carotene desaturase | 96.84 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 96.83 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 96.79 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 96.77 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 96.75 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 96.75 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 96.73 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 96.68 | |
| PLN02328 | 808 | lysine-specific histone demethylase 1 homolog | 96.67 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 96.61 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 96.61 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.55 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 96.51 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 96.5 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 96.35 | |
| PLN02976 | 1713 | amine oxidase | 96.33 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 96.31 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 96.28 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 96.26 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 96.22 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 96.2 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 96.14 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 96.12 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 96.05 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 96.04 | |
| PLN02568 | 539 | polyamine oxidase | 96.02 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 95.9 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 95.81 | |
| PLN02676 | 487 | polyamine oxidase | 95.79 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 95.77 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 95.69 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 95.67 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 95.65 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 95.64 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 95.58 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 95.47 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 95.4 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 95.39 | |
| PLN03000 | 881 | amine oxidase | 95.24 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 95.23 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 95.01 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 94.89 | |
| PLN02823 | 336 | spermine synthase | 94.48 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 94.32 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 94.32 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 94.28 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 94.2 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 93.97 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 93.83 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 93.62 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 93.57 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 93.57 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 93.42 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 93.27 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 93.26 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 93.02 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 92.82 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 92.65 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 92.42 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 92.42 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 92.22 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 92.04 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 92.02 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 92.02 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 92.0 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 91.9 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 91.56 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 91.47 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 91.39 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 91.24 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 91.16 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 91.13 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 90.09 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 90.0 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 89.99 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 89.74 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 89.57 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 89.32 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 89.3 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 88.74 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 87.76 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 87.69 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 87.15 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 87.09 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 86.39 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 86.36 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 86.35 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 86.3 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 86.04 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 85.82 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 85.53 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 85.3 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 84.88 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 84.62 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 82.7 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 82.38 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 82.2 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 81.47 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 80.95 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 80.89 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 80.79 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 80.59 |
| >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=381.02 Aligned_cols=158 Identities=34% Similarity=0.537 Sum_probs=146.1
Q ss_pred cEEEEeCCCceEeCCEEEEecChHHHHHhhcCCCCHHHHhhccCCc----eeEeccCCCCCCCCCCCccccccccCCCCC
Q 043102 112 SCTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH----DIFLHCDKNSMPQNPAAWSAWSFLGSLDSK 187 (525)
Q Consensus 112 gv~v~~~~g~~e~fD~VV~A~hadqAL~lL~~~~t~~E~~iLg~f~----~~vlHtD~s~mP~~~~aWaswNy~~~~~~~ 187 (525)
||.|...+|+++.||+||+|||+||||.||.+ ||++|+++|++|. ++|||+|+++||+++.||++|||..+....
T Consensus 249 Gv~l~~~~G~s~rFD~vViAth~dqAl~mL~e-~sp~e~qll~a~~Ys~n~aVlhtd~~lmPrR~~Awaswny~~~~~~e 327 (447)
T COG2907 249 GVVLVNADGESRRFDAVVIATHPDQALALLDE-PSPEERQLLGALRYSANTAVLHTDASLMPRRLRAWASWNYLGTVQWE 327 (447)
T ss_pred ceEEecCCCCccccceeeeecChHHHHHhcCC-CCHHHHHHHHhhhhhhceeEEeecccccccccccccccceecccccc
Confidence 78888888999999999999999999999995 9999999999999 999999999999999999999999873211
Q ss_pred ----------C----CCCCCCCeEEEcC--CCCCCcceeeEEEecCCCCCHHHHHHHHHhhhhcCCCCeEEeccCCCCCC
Q 043102 188 ----------N----LGETSLPYLVTLN--PDHAPEHTLLKWSTGPPVPFVAASKASLELGHIQGRRGIWFRGAYQGYGF 251 (525)
Q Consensus 188 ----------n----l~~~~~~~fvTLN--p~~~p~~il~~~~y~HPv~~~~a~~aq~~l~~iqG~~~~~fcGay~g~Gf 251 (525)
| +.. ..++||||| |..+|++|+++..|+||+|+.+++.||++++.+||.|++||||||++.||
T Consensus 328 ~~~~~lty~mN~lq~l~~-~~~~~vtln~~~~~dpa~v~~~~ty~HPlf~~~avraqq~l~alqg~~~twfcgAy~g~GF 406 (447)
T COG2907 328 LCQGSLTYWMNRLQALIS-VRDYFVTLNNRPWVDPAHVIAERTYPHPLFDPEAVRAQQELWALQGARRTWFCGAYFGRGF 406 (447)
T ss_pred ccCcceeccHHHhhcccC-CcceEEEecCCcccChHHhhHHhhcCCcCCCHHHHHHHHHHHhhhcCCCCCcchhhhcccc
Confidence 3 333 578999999 88899999999999999999999999999999999999999999999999
Q ss_pred chhhhchHHHHHhhhcCCccc
Q 043102 252 HEDGLKDLSINSCMTYGEECF 272 (525)
Q Consensus 252 HEdg~~Sgl~aA~~llG~~~p 272 (525)
||||+.||++||++| |+.++
T Consensus 407 HeDg~~aGl~va~~l-g~~w~ 426 (447)
T COG2907 407 HEDGLQAGLAVAEDL-GAPWE 426 (447)
T ss_pred chhhhhhHHHHHHhc-CCccc
Confidence 999999999999999 87654
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=299.54 Aligned_cols=162 Identities=38% Similarity=0.634 Sum_probs=150.0
Q ss_pred hhhcccCchhHHHHhhhcccccchHHHHhccccccchhccccCCC-------------------------eehhhc----
Q 043102 355 RHISRTNTLTQACRHISRHYDLSNELFCLFLDESLTYSCALFKVR-------------------------EVIFLG---- 405 (525)
Q Consensus 355 ~~~~~~N~~~~s~~nIa~hYDl~nd~y~l~Ld~~m~ys~a~f~~~-------------------------rVLDIG---- 405 (525)
.+..++|++..+++||++|||++|+||++||||+|+|||+||+++ +|||||
T Consensus 5 ~~~~~~~~~~~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG 84 (283)
T COG2230 5 RRLLNRHSKRRAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWG 84 (283)
T ss_pred ccccccccccchhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChh
Confidence 355667899999999999999999999999999999999999875 999999
Q ss_pred --HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc--------ccCcccHHHHHHHHHh
Q 043102 406 --TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR--------SFGHEYMEEFFGCCES 460 (525)
Q Consensus 406 --a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~--------~vg~~~~~~~f~~i~r 460 (525)
++++|++||++|+|||+|++|.+.|++++++.|++++ |+ |||.+++++||+.+++
T Consensus 85 ~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~ 164 (283)
T COG2230 85 GLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYA 164 (283)
T ss_pred HHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccceeeehhhHHHhCcccHHHHHHHHHh
Confidence 8999999999999999999999999999999999865 55 8899999999999999
Q ss_pred ccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 461 LIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 461 ~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
+|+|||++++|+|+.+++.+. ...+||.+||||||+|||++++.+.++++ ||+|.-
T Consensus 165 ~L~~~G~~llh~I~~~~~~~~---~~~~~i~~yiFPgG~lPs~~~i~~~~~~~-~~~v~~ 220 (283)
T COG2230 165 LLKPGGRMLLHSITGPDQEFR---RFPDFIDKYIFPGGELPSISEILELASEA-GFVVLD 220 (283)
T ss_pred hcCCCceEEEEEecCCCcccc---cchHHHHHhCCCCCcCCCHHHHHHHHHhc-CcEEeh
Confidence 999999999999999987654 67999999999999999999999998885 898863
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=298.47 Aligned_cols=160 Identities=43% Similarity=0.677 Sum_probs=126.3
Q ss_pred chhHHHHhhhcccccchHHHHhccccccchhccccCCC-------------------------eehhhc------HHHHH
Q 043102 362 TLTQACRHISRHYDLSNELFCLFLDESLTYSCALFKVR-------------------------EVIFLG------TIEVV 410 (525)
Q Consensus 362 ~~~~s~~nIa~hYDl~nd~y~l~Ld~~m~ys~a~f~~~-------------------------rVLDIG------a~~lA 410 (525)
+++++++||++|||++|+||++|||++|+|||+||+++ |||||| ++++|
T Consensus 2 ~~~~~~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a 81 (273)
T PF02353_consen 2 SKKQSRENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAA 81 (273)
T ss_dssp -S---HHHHHHHHTS-HHHHTTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHH
T ss_pred ccchHHHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHH
Confidence 56899999999999999999999999999999999876 999999 89999
Q ss_pred HhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc--------ccCcccHHHHHHHHHhccCCCcE
Q 043102 411 KRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR--------SFGHEYMEEFFGCCESLIAKDGL 467 (525)
Q Consensus 411 ~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~--------~vg~~~~~~~f~~i~r~LkpGG~ 467 (525)
+++||+|||||+|++|.++|+++++++|++++ |+ |+|.++++.||++|.++|||||+
T Consensus 82 ~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~ 161 (273)
T PF02353_consen 82 ERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGR 161 (273)
T ss_dssp HHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEE
T ss_pred HHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcE
Confidence 99999999999999999999999999999876 55 88999999999999999999999
Q ss_pred EEEEEecCCCcchhcccCc-hhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 468 FVLQFISIPDERYNEFRLS-SDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 468 ~viq~i~~~~~~~~~~~~~-~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
+++|.|+.++..+..+... .+||++||||||+|||+++++..+++ +||+|.-..
T Consensus 162 ~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~-~~l~v~~~~ 216 (273)
T PF02353_consen 162 LVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAED-AGLEVEDVE 216 (273)
T ss_dssp EEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHH-TT-EEEEEE
T ss_pred EEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhc-CCEEEEEEE
Confidence 9999999998877665443 49999999999999999999998888 599987543
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=283.37 Aligned_cols=207 Identities=26% Similarity=0.467 Sum_probs=169.7
Q ss_pred cceEEEEcChHHHHHHHHHcCCCccccccccc--ccCCCchhhhhhhHH-------------HH---HHHH-hhhcccCc
Q 043102 302 LKTVLRIHSPQFYWKILIANRDLDSSVSRLNQ--KRGWWSPILFTAGFA-------------SA---KYFF-RHISRTNT 362 (525)
Q Consensus 302 ~~~~l~v~~~~~~~rl~~~n~~~~~~~~g~~e--~~g~w~~~~l~~~l~-------------~~---~~~~-~~~~~~N~ 362 (525)
++++|+|+|+++++|++ ..|+ +|++| |+|+|+.+.+...+. .+ ...+ .++.+.|+
T Consensus 35 ~~~~~~~~~~~~~~~~~-~~~~-----lg~~eaY~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 108 (383)
T PRK11705 35 RPWDIQVHNPRFFKRVL-QEGS-----LGLGESYMDGWWDCDRLDEFFSRVLRAGLDEKLPHHLKDTLRILRARLFNLQS 108 (383)
T ss_pred CCeEEEECCHHHHHHHh-ccCC-----ccHHHHHHcCCeecCCHHHHHHHHHHccchhhhhhhHHHHHHHHHHHHhccCC
Confidence 67899999999999999 8888 89999 999999765433221 01 1111 22456799
Q ss_pred hhHHHHhhhcccccchHHHHhccccccchhccccCCC------------------------eehhhc------HHHHHHh
Q 043102 363 LTQACRHISRHYDLSNELFCLFLDESLTYSCALFKVR------------------------EVIFLG------TIEVVKR 412 (525)
Q Consensus 363 ~~~s~~nIa~hYDl~nd~y~l~Ld~~m~ys~a~f~~~------------------------rVLDIG------a~~lA~~ 412 (525)
++++++||++|||++|+||++|||++|+|||+||++. +||||| ++++|++
T Consensus 109 ~~~~~~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~ 188 (383)
T PRK11705 109 KKRAWIVGKEHYDLGNDLFEAMLDPRMQYSCGYWKDADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEH 188 (383)
T ss_pred hhhHHHhhhhhcCCcHHHHHHhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHH
Confidence 9999999999999999999999999999999999642 999999 7888887
Q ss_pred cCCEEEEEcCChHHHHHHHHHHHHcCCC----------CC-Cc--------ccCcccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 413 TGCKYTGITLAEKQLKYAGIKVKEADLE----------RN-DR--------SFGHEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 413 ~G~~VtGIdlS~eql~~Ar~r~~~~gl~----------d~-D~--------~vg~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
+|++|+|||+|++|++.|+++++...+. .. |. |+|.++++.+|+++.++|||||+++++++
T Consensus 189 ~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 189 YGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred CCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 8999999999999999999998532221 11 44 67788899999999999999999999999
Q ss_pred cCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 474 SIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 474 ~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
+.+... .....|+++|||||+++|+++++...++. +|+|.-
T Consensus 269 ~~~~~~----~~~~~~i~~yifp~g~lps~~~i~~~~~~--~~~v~d 309 (383)
T PRK11705 269 GSNKTD----TNVDPWINKYIFPNGCLPSVRQIAQASEG--LFVMED 309 (383)
T ss_pred cCCCCC----CCCCCCceeeecCCCcCCCHHHHHHHHHC--CcEEEE
Confidence 776532 34578999999999999999999887664 787754
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.9e-13 Score=137.48 Aligned_cols=155 Identities=17% Similarity=0.180 Sum_probs=112.8
Q ss_pred chhHHHHhhhcccccchHHHHhccccccchhccccCC--------------------------------Ceehhhc----
Q 043102 362 TLTQACRHISRHYDLSNELFCLFLDESLTYSCALFKV--------------------------------REVIFLG---- 405 (525)
Q Consensus 362 ~~~~s~~nIa~hYDl~nd~y~l~Ld~~m~ys~a~f~~--------------------------------~rVLDIG---- 405 (525)
+....+++|+.|||..+++|+.++++.|+ .+||+. .+|||||
T Consensus 53 ~~~~~~~~i~~~Yd~~~~~~e~~~g~~~h--~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G 130 (340)
T PLN02244 53 ATADLKEGIAEFYDESSGVWEDVWGEHMH--HGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIG 130 (340)
T ss_pred chhhHHHHHHHHHccchHHHHHHhCCcce--eeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCC
Confidence 33556889999999999999999988764 344432 2899999
Q ss_pred --HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc--cc----CcccHHHHHHHHH
Q 043102 406 --TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR--SF----GHEYMEEFFGCCE 459 (525)
Q Consensus 406 --a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~--~v----g~~~~~~~f~~i~ 459 (525)
+..+++++|++|+|||+|++|++.|++++++.|+.++ |. .. ...+...+|+++.
T Consensus 131 ~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~ 210 (340)
T PLN02244 131 GSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELA 210 (340)
T ss_pred HHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHH
Confidence 7888887799999999999999999999988776543 22 00 1346789999999
Q ss_pred hccCCCcEEEEEEecCCCcchhc--ccCc-----hhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 460 SLIAKDGLFVLQFISIPDERYNE--FRLS-----SDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 460 r~LkpGG~~viq~i~~~~~~~~~--~~~~-----~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
|+|||||++++.++...+..... .... ..+...|.+|. ..+..++.+.++++ ||+++..
T Consensus 211 rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~--~~s~~~~~~~l~~a-Gf~~v~~ 276 (340)
T PLN02244 211 RVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPA--WCSTSDYVKLAESL-GLQDIKT 276 (340)
T ss_pred HHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCC--CCCHHHHHHHHHHC-CCCeeEe
Confidence 99999999999887654321110 0000 11233444553 24789999999985 9987654
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-12 Score=130.47 Aligned_cols=158 Identities=16% Similarity=0.243 Sum_probs=114.8
Q ss_pred CchhHHHHhhhcccccchHHHHhccccccchh----ccccCCCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHH
Q 043102 361 NTLTQACRHISRHYDLSNELFCLFLDESLTYS----CALFKVREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKY 429 (525)
Q Consensus 361 N~~~~s~~nIa~hYDl~nd~y~l~Ld~~m~ys----~a~f~~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~ 429 (525)
..+...+++|+..||+.|++.++.++..+.-. ...-+..+|||+| |+.+++.. .++|+|+|+|++|++.
T Consensus 11 ~~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~ 90 (238)
T COG2226 11 EKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEV 90 (238)
T ss_pred HHHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHH
Confidence 46678899999999999999988888765321 1222456999999 88888874 3799999999999999
Q ss_pred HHHHHHHcCCCCC-----------------Cc---ccC---cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCc
Q 043102 430 AGIKVKEADLERN-----------------DR---SFG---HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLS 486 (525)
Q Consensus 430 Ar~r~~~~gl~d~-----------------D~---~vg---~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~ 486 (525)
|++|+.+.|...- |. ..| ..+.+..+++++|+|||||++++-++..++...-. ...
T Consensus 91 a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~-~~~ 169 (238)
T COG2226 91 AREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLR-KAY 169 (238)
T ss_pred HHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhH-HHH
Confidence 9999998664321 33 223 35789999999999999999999999887652110 001
Q ss_pred hhHHhhcccC-------------------CCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 487 SDFMKEYIFP-------------------GGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 487 ~~fi~kYIFP-------------------Gg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
..|..+++.| .-..|+.+++...++++ ||+.+.
T Consensus 170 ~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~-gf~~i~ 221 (238)
T COG2226 170 ILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKA-GFEEVR 221 (238)
T ss_pred HHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhc-CceEEe
Confidence 1222233333 12459999999999995 888543
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-13 Score=134.22 Aligned_cols=157 Identities=20% Similarity=0.240 Sum_probs=62.9
Q ss_pred cCchhHHHHhhhcccccchHHHHhccccccchh----ccccCCCeehhhc------HHHHHHhc--CCEEEEEcCChHHH
Q 043102 360 TNTLTQACRHISRHYDLSNELFCLFLDESLTYS----CALFKVREVIFLG------TIEVVKRT--GCKYTGITLAEKQL 427 (525)
Q Consensus 360 ~N~~~~s~~nIa~hYDl~nd~y~l~Ld~~m~ys----~a~f~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql 427 (525)
.+.++..++.|+..||..|++.++..+..+... ...-+..+|||+| ++.++++. +++|+|+|+|++|+
T Consensus 6 ~~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML 85 (233)
T PF01209_consen 6 EQYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGML 85 (233)
T ss_dssp -------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHH
T ss_pred HHHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHH
Confidence 456788899999999999999998888765432 1223345999999 67778764 47999999999999
Q ss_pred HHHHHHHHHcCCCCC-----------------Cc---ccC---cccHHHHHHHHHhccCCCcEEEEEEecCCCcch----
Q 043102 428 KYAGIKVKEADLERN-----------------DR---SFG---HEYMEEFFGCCESLIAKDGLFVLQFISIPDERY---- 480 (525)
Q Consensus 428 ~~Ar~r~~~~gl~d~-----------------D~---~vg---~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~---- 480 (525)
+.|++++++.+...- |. ..| ..+.+..+++++|+|||||+++|.+++.++...
T Consensus 86 ~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~ 165 (233)
T PF01209_consen 86 EVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRAL 165 (233)
T ss_dssp HHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHH
T ss_pred HHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhce
Confidence 999999988765321 22 233 356889999999999999999999999887531
Q ss_pred -hcccC-chhHHhhcccCC------------CCCCCHHHHHHHHHhcCCcEE
Q 043102 481 -NEFRL-SSDFMKEYIFPG------------GCLPSLSRITSAMSAASRLWY 518 (525)
Q Consensus 481 -~~~~~-~~~fi~kYIFPG------------g~LPsl~~i~~~~~~a~gl~V 518 (525)
..|.. ..+++-+ ++.+ ..+|+.+++.+.++++ ||+.
T Consensus 166 ~~~y~~~ilP~~g~-l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~-Gf~~ 215 (233)
T PF01209_consen 166 YKFYFKYILPLIGR-LLSGDREAYRYLPESIRRFPSPEELKELLEEA-GFKN 215 (233)
T ss_dssp HHH-------------------------------------------------
T ss_pred eeeeeccccccccc-cccccccccccccccccccccccccccccccc-cccc
Confidence 11111 1222211 1111 1458888999999985 8874
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.3e-11 Score=119.58 Aligned_cols=155 Identities=12% Similarity=0.076 Sum_probs=103.6
Q ss_pred chhHHHHhhhcccccchHHHHhccccccchh----ccccCCCeehhhc------HHHHHHhcC--CEEEEEcCChHHHHH
Q 043102 362 TLTQACRHISRHYDLSNELFCLFLDESLTYS----CALFKVREVIFLG------TIEVVKRTG--CKYTGITLAEKQLKY 429 (525)
Q Consensus 362 ~~~~s~~nIa~hYDl~nd~y~l~Ld~~m~ys----~a~f~~~rVLDIG------a~~lA~~~G--~~VtGIdlS~eql~~ 429 (525)
.+...++.++..||..+++..+..+..+... ..+-+..+||||| +..++++.+ ++|+|||+|++|++.
T Consensus 34 ~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~ 113 (261)
T PLN02233 34 ERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAV 113 (261)
T ss_pred HHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 4567789999999998887655545433221 1233445999999 677777644 699999999999999
Q ss_pred HHHHHHH--cCCCCC------------------Cc---c--c-CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcc
Q 043102 430 AGIKVKE--ADLERN------------------DR---S--F-GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEF 483 (525)
Q Consensus 430 Ar~r~~~--~gl~d~------------------D~---~--v-g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~ 483 (525)
|+++... .+...+ |. . + ...+...+++++.|+|||||++++.++..++..+..
T Consensus 114 A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~- 192 (261)
T PLN02233 114 AASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTT- 192 (261)
T ss_pred HHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHH-
Confidence 9988641 111000 33 0 1 135788999999999999999999988876543211
Q ss_pred cCchhHHhhccc-CC-----------------CCCCCHHHHHHHHHhcCCcEEE
Q 043102 484 RLSSDFMKEYIF-PG-----------------GCLPSLSRITSAMSAASRLWYN 519 (525)
Q Consensus 484 ~~~~~fi~kYIF-PG-----------------g~LPsl~~i~~~~~~a~gl~V~ 519 (525)
....|..+.+. |- ...++..++.+.++++ ||++.
T Consensus 193 -~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~a-GF~~~ 244 (261)
T PLN02233 193 -SMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEA-GFSSA 244 (261)
T ss_pred -HHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCEE
Confidence 11122221111 10 2468999999999985 99865
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-09 Score=106.04 Aligned_cols=112 Identities=15% Similarity=0.190 Sum_probs=85.4
Q ss_pred eehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cccc------Ccc
Q 043102 400 EVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DRSF------GHE 449 (525)
Q Consensus 400 rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~~v------g~~ 449 (525)
+||||| +..+++++ +++|+|+|+|++|++.|++++++.|+.++ |..+ ...
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~~ 81 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHIK 81 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhCC
Confidence 699999 77888876 68999999999999999999988887553 2201 124
Q ss_pred cHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 450 YMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 450 ~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
+++.+|+++.++|||||+++++++.... +. ....+++.. ++|+..++.+.++++ ||++.-..
T Consensus 82 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~--~~--~~~~~~~~~------~~~s~~~~~~~l~~~-Gf~~~~~~ 143 (224)
T smart00828 82 DKMDLFSNISRHLKDGGHLVLADFIANL--LS--AIEHEETTS------YLVTREEWAELLARN-NLRVVEGV 143 (224)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEEccccc--Cc--ccccccccc------ccCCHHHHHHHHHHC-CCeEEEeE
Confidence 6889999999999999999999875332 10 112333333 378999999999995 99987654
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-09 Score=107.00 Aligned_cols=157 Identities=16% Similarity=0.174 Sum_probs=104.6
Q ss_pred CchhHHHHhhhcccccchHHHHhccccccc--h--hccccCCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHH
Q 043102 361 NTLTQACRHISRHYDLSNELFCLFLDESLT--Y--SCALFKVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLK 428 (525)
Q Consensus 361 N~~~~s~~nIa~hYDl~nd~y~l~Ld~~m~--y--s~a~f~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~ 428 (525)
..+++.++.++.+||..|.+..+..+..+. . ....-++.+||||| +..+++.. +++|+|+|+|++|++
T Consensus 5 ~~~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~ 84 (231)
T TIGR02752 5 ERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLS 84 (231)
T ss_pred HHHHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 345778899999999988877655554321 0 11222345999999 67777753 579999999999999
Q ss_pred HHHHHHHHcCCCCC-----------------Cc-cc-----CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccC
Q 043102 429 YAGIKVKEADLERN-----------------DR-SF-----GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRL 485 (525)
Q Consensus 429 ~Ar~r~~~~gl~d~-----------------D~-~v-----g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~ 485 (525)
.|+++++..++..- |. .. ..+++..+++++.++|||||++++.+.+.+.... .+.
T Consensus 85 ~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~--~~~ 162 (231)
T TIGR02752 85 VGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPG--FKQ 162 (231)
T ss_pred HHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChH--HHH
Confidence 99999877665321 22 11 1356789999999999999999988766543211 000
Q ss_pred chhHHhhcccC-------------------CCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 486 SSDFMKEYIFP-------------------GGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 486 ~~~fi~kYIFP-------------------Gg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
...+..+++.| ...+|+..++.+.++++ ||++..
T Consensus 163 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a-Gf~~~~ 215 (231)
T TIGR02752 163 LYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEA-GFKDVE 215 (231)
T ss_pred HHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCeeE
Confidence 01111111111 12468999999999995 898653
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-09 Score=109.01 Aligned_cols=114 Identities=16% Similarity=0.246 Sum_probs=85.3
Q ss_pred hHHHHhhhcccccchHHHHhccccccc--hhccc--cCCCeehhhc------HHHHHHhc-------CCEEEEEcCChHH
Q 043102 364 TQACRHISRHYDLSNELFCLFLDESLT--YSCAL--FKVREVIFLG------TIEVVKRT-------GCKYTGITLAEKQ 426 (525)
Q Consensus 364 ~~s~~nIa~hYDl~nd~y~l~Ld~~m~--ys~a~--f~~~rVLDIG------a~~lA~~~-------G~~VtGIdlS~eq 426 (525)
..-+.+++..||+.||..++....-|. +-.++ ....+|||++ |..+.++- +.+||.+|+|++|
T Consensus 63 ~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~m 142 (296)
T KOG1540|consen 63 HHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHM 142 (296)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHH
Confidence 556788999999999998776663221 11111 1224999998 66666542 2699999999999
Q ss_pred HHHHHHHHHHcCCCCC--------Cc---------------ccCcc---cHHHHHHHHHhccCCCcEEEEEEecCCC
Q 043102 427 LKYAGIKVKEADLERN--------DR---------------SFGHE---YMEEFFGCCESLIAKDGLFVLQFISIPD 477 (525)
Q Consensus 427 l~~Ar~r~~~~gl~d~--------D~---------------~vg~~---~~~~~f~~i~r~LkpGG~~viq~i~~~~ 477 (525)
++.+++|+++.++.+. |+ +.|.+ +.++.+++++|+|||||+|.+-+...-+
T Consensus 143 L~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~ 219 (296)
T KOG1540|consen 143 LAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVE 219 (296)
T ss_pred HHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccc
Confidence 9999999988777554 22 45644 5788999999999999999998877655
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=98.97 E-value=4e-09 Score=109.86 Aligned_cols=122 Identities=16% Similarity=0.247 Sum_probs=87.6
Q ss_pred cCCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc-------
Q 043102 396 FKVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR------- 444 (525)
Q Consensus 396 f~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~------- 444 (525)
++..+||||| +..+|+ .|++|+|||+|++|++.|+++++..++..+ |.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~-~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLAR-MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 3445999999 677776 599999999999999999988765433111 44
Q ss_pred -ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCC----CCCHHHHHHHHHhcCCcEEE
Q 043102 445 -SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGC----LPSLSRITSAMSAASRLWYN 519 (525)
Q Consensus 445 -~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~----LPsl~~i~~~~~~a~gl~V~ 519 (525)
|+ .+...+++++.++|||||++++.++......|........++.+.+.+|++ +.+++++.+.++++ ||++.
T Consensus 209 eHv--~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~a-Gf~i~ 285 (322)
T PLN02396 209 EHV--ANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRA-SVDVK 285 (322)
T ss_pred Hhc--CCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHc-CCeEE
Confidence 33 467899999999999999999998865432232111223444444444443 57899999999995 99987
Q ss_pred EE
Q 043102 520 LA 521 (525)
Q Consensus 520 ~~ 521 (525)
-.
T Consensus 286 ~~ 287 (322)
T PLN02396 286 EM 287 (322)
T ss_pred EE
Confidence 54
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.5e-09 Score=105.98 Aligned_cols=118 Identities=19% Similarity=0.290 Sum_probs=85.6
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc--------cc
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR--------SF 446 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~--------~v 446 (525)
...+||||| +..+|+. |++|||+|+|++.++.|+.++.+.|+... |. ||
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 345999999 8889985 99999999999999999999999888632 33 44
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCC-----CCHHHHHHHHHhcCCcEEE
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCL-----PSLSRITSAMSAASRLWYN 519 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~L-----Psl~~i~~~~~~a~gl~V~ 519 (525)
++-+.|++.|.++|||||.+++-+|......|-...-...++-+ ++|.|.- --.+|+...+.. +++.+.
T Consensus 138 --~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~-~vP~gTH~~~k~irp~El~~~~~~-~~~~~~ 211 (243)
T COG2227 138 --PDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLR-IVPKGTHDYRKFIKPAELIRWLLG-ANLKII 211 (243)
T ss_pred --CCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHH-hcCCcchhHHHhcCHHHHHHhccc-CCceEE
Confidence 46678999999999999999999997655443322222333433 6776632 345566655555 355543
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.9e-09 Score=103.76 Aligned_cols=119 Identities=14% Similarity=0.229 Sum_probs=84.6
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcC-------------CCCC--Cc--------ccCc
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEAD-------------LERN--DR--------SFGH 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~g-------------l~d~--D~--------~vg~ 448 (525)
..+||||| +..+++.++++|+|+|+|++|++.|+++..... +.+. |. |++.
T Consensus 53 ~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~ 132 (263)
T PTZ00098 53 NSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILHLSY 132 (263)
T ss_pred CCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCH
Confidence 34999999 778887779999999999999999999865311 1111 33 3444
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhccc-CCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIF-PGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIF-PGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
++...++++++++|||||++++..++..+.. ...+-+..|+- .+-.+++..++.+.++++ ||+++-..
T Consensus 133 ~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-GF~~v~~~ 201 (263)
T PTZ00098 133 ADKKKLFEKCYKWLKPNGILLITDYCADKIE-----NWDEEFKAYIKKRKYTLIPIQEYGDLIKSC-NFQNVVAK 201 (263)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEecccccc-----CcHHHHHHHHHhcCCCCCCHHHHHHHHHHC-CCCeeeEE
Confidence 5789999999999999999999887655321 11111222221 123568999999999995 99876554
|
|
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-09 Score=107.92 Aligned_cols=180 Identities=17% Similarity=0.170 Sum_probs=115.7
Q ss_pred CccHHHHHHHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCc-eEeCCEEEEecChHHHHHhhcCC---CC
Q 043102 71 YPNMMELFESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGS-REFYNSCVMALHAPDALKILGNQ---AT 146 (525)
Q Consensus 71 fPn~~~~~~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~-~e~fD~VV~A~hadqAL~lL~~~---~t 146 (525)
=|-|+..=+-|.-|+ .+..++.. ..+-|. ..++++++++|. ...||.||+|.||+|+..||..+ ..
T Consensus 104 ~pgmsalak~LAtdL-----~V~~~~rV-t~v~~~----~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p 173 (331)
T COG3380 104 EPGMSALAKFLATDL-----TVVLETRV-TEVART----DNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLP 173 (331)
T ss_pred CcchHHHHHHHhccc-----hhhhhhhh-hhheec----CCeeEEEecCCCcccccceEEEecCCCcchhhcCcccccch
Confidence 377888777776554 22221100 123333 248999996654 45699999999999999999632 33
Q ss_pred HHHHhhccCCc-----eeEeccC-CCCCCC-------CCCCcccccccc-CCCCC---------------CCCCCC----
Q 043102 147 FDETRTGGAFH-----DIFLHCD-KNSMPQ-------NPAAWSAWSFLG-SLDSK---------------NLGETS---- 193 (525)
Q Consensus 147 ~~E~~iLg~f~-----~~vlHtD-~s~mP~-------~~~aWaswNy~~-~~~~~---------------nl~~~~---- 193 (525)
.+=+..|..+. .++||-- ++..|- ...+|.+.|-.+ ..... ++....
T Consensus 174 ~~l~~~~a~V~y~Pc~s~~lg~~q~l~~P~~G~~vdg~~laWla~d~sK~g~~p~~~~~vvqasp~wSr~h~~~~~e~~i 253 (331)
T COG3380 174 AALRAALADVVYAPCWSAVLGYPQPLDRPWPGNFVDGHPLAWLARDASKKGHVPDGEIWVVQASPDWSREHLDHPAEQVI 253 (331)
T ss_pred HHHHHhhccceehhHHHHHhcCCccCCCCCCCcccCCCeeeeeeccccCCCCCCcCceEEEEeCchHHHHhhcCCHHHHH
Confidence 34455666666 4555543 444332 455677776332 21110 233211
Q ss_pred ---CCeEEEcCCCCCCcc---eeeEEEecCCCC--CHHHHHHHHHhhhhcCCCCeEEeccCCCCCCchhhhchHHHHHhh
Q 043102 194 ---LPYLVTLNPDHAPEH---TLLKWSTGPPVP--FVAASKASLELGHIQGRRGIWFRGAYQGYGFHEDGLKDLSINSCM 265 (525)
Q Consensus 194 ---~~~fvTLNp~~~p~~---il~~~~y~HPv~--~~~a~~aq~~l~~iqG~~~~~fcGay~g~GfHEdg~~Sgl~aA~~ 265 (525)
+.-|+++.++.-|++ +.++|+|.||.- ..+.+-|+. +-++++||+||.-|--|.++.||+++|++
T Consensus 254 ~~l~aA~~~~~~~~~~~p~~s~~H~WrYA~P~~~~~~~~L~ad~-------~~~l~~cGDwc~GgrVEgA~LSGlAaA~~ 326 (331)
T COG3380 254 VALRAAAQELDGDRLPEPDWSDAHRWRYAIPNDAVAGPPLDADR-------ELPLYACGDWCAGGRVEGAVLSGLAAADH 326 (331)
T ss_pred HHHHHhhhhccCCCCCcchHHHhhccccccccccccCCccccCC-------CCceeeecccccCcchhHHHhccHHHHHH
Confidence 223677777666664 778999999973 333333333 78999999999999999999999999999
Q ss_pred hc
Q 043102 266 TY 267 (525)
Q Consensus 266 ll 267 (525)
|+
T Consensus 327 i~ 328 (331)
T COG3380 327 IL 328 (331)
T ss_pred HH
Confidence 84
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.4e-08 Score=107.46 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=84.9
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc--c---c-Ccc
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR--S---F-GHE 449 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~--~---v-g~~ 449 (525)
..+||||| ++.++++.|++|+|+|+|++|++.|++++...+.... |. . + ...
T Consensus 267 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~ 346 (475)
T PLN02336 267 GQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQ 346 (475)
T ss_pred CCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccccC
Confidence 34999999 7788887799999999999999999988753221000 22 0 1 134
Q ss_pred cHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhccc-CCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 450 YMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIF-PGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 450 ~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIF-PGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
+.+.++++++++|||||++++.+....... ..+.+.+++. .|..+++..++.+.++++ ||+++..
T Consensus 347 d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~l~~a-GF~~i~~ 412 (475)
T PLN02336 347 DKPALFRSFFKWLKPGGKVLISDYCRSPGT------PSPEFAEYIKQRGYDLHDVQAYGQMLKDA-GFDDVIA 412 (475)
T ss_pred CHHHHHHHHHHHcCCCeEEEEEEeccCCCC------CcHHHHHHHHhcCCCCCCHHHHHHHHHHC-CCeeeee
Confidence 678999999999999999999987654321 1122222322 355789999999999995 9998754
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.8e-08 Score=85.89 Aligned_cols=75 Identities=20% Similarity=0.316 Sum_probs=60.3
Q ss_pred CCeehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc--ccC---
Q 043102 398 VREVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR--SFG--- 447 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~--~vg--- 447 (525)
+.+||||| +++++++ .+++|+|||+|+++++.|++++++.+..++ |. ..+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 35899999 7788873 699999999999999999999977666555 22 112
Q ss_pred -----cccHHHHHHHHHhccCCCcEEEEEE
Q 043102 448 -----HEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 448 -----~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.+...++++.+.+.|+|||++++.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 1356788999999999999999974
|
... |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.2e-08 Score=98.29 Aligned_cols=122 Identities=18% Similarity=0.258 Sum_probs=89.3
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC-----------CC---------Cccc------
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE-----------RN---------DRSF------ 446 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~-----------d~---------D~~v------ 446 (525)
.+|||+| ++.||+ +|+.|+|||+|+++++.|+++.+...+. +. |+-|
T Consensus 91 ~~ilDvGCGgGLLSepLAr-lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsevle 169 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLAR-LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEVLE 169 (282)
T ss_pred ceEEEeccCccccchhhHh-hCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHHHH
Confidence 4799999 889997 6999999999999999999995432111 11 4411
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccC-CC----CCCCHHHHHHHHHhcCCcEEEEE
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFP-GG----CLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFP-Gg----~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
..++.++|.+.+.++|||||+++|.+|...-.-|..-.-..+.+.+ |-| |+ -++++.++...+.++ ++.|+.+
T Consensus 170 HV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~-ivp~Gth~~ekfi~p~e~~~~l~~~-~~~v~~v 247 (282)
T KOG1270|consen 170 HVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLR-IVPKGTHTWEKFINPEELTSILNAN-GAQVNDV 247 (282)
T ss_pred HHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHH-hcCCCCcCHHHcCCHHHHHHHHHhc-Ccchhhh
Confidence 2357899999999999999999999987654333322233455555 555 43 348899999999885 8888766
Q ss_pred Ee
Q 043102 522 VS 523 (525)
Q Consensus 522 ~~ 523 (525)
+.
T Consensus 248 ~G 249 (282)
T KOG1270|consen 248 VG 249 (282)
T ss_pred hc
Confidence 54
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.1e-07 Score=90.05 Aligned_cols=109 Identities=9% Similarity=0.001 Sum_probs=76.9
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc--------cc
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR--------SF 446 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~--------~v 446 (525)
+..+|||+| ++.+|++ |++|+|+|+|+++++.|+++++..++..- |. ++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~~ 108 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFILSTVVLMFL 108 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEEEEecchhhC
Confidence 345999999 8888986 99999999999999999999988776421 22 22
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
.....+.+++++.++|||||++++-+...++.. . +. .-+| +..+.+|+.+.++ ||++.--
T Consensus 109 ~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~-~-~~--------~~~~--~~~~~~el~~~~~---~~~~~~~ 168 (197)
T PRK11207 109 EAKTIPGLIANMQRCTKPGGYNLIVAAMDTADY-P-CT--------VGFP--FAFKEGELRRYYE---GWEMVKY 168 (197)
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCC-C-CC--------CCCC--CccCHHHHHHHhC---CCeEEEe
Confidence 445688999999999999999766544333221 0 00 0122 3357788877664 6776543
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.8e-07 Score=93.80 Aligned_cols=119 Identities=13% Similarity=0.086 Sum_probs=81.0
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-------------------Cccc------C
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-------------------DRSF------G 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-------------------D~~v------g 447 (525)
.+||||| +..++++ |++|+|+|+|++|++.|++++++.|+.++ |..+ .
T Consensus 46 ~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~ 124 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEW 124 (255)
T ss_pred CEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHh
Confidence 4999999 7788875 99999999999999999999988876533 2200 0
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcc-cCchhHHhh--------cccCCCCCCCHHHHHHHHHhcCCcEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEF-RLSSDFMKE--------YIFPGGCLPSLSRITSAMSAASRLWY 518 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~-~~~~~fi~k--------YIFPGg~LPsl~~i~~~~~~a~gl~V 518 (525)
..+...+++++.++|||||++++.........+... ....+.+.. ...|. ...+++++.+.++++ ||++
T Consensus 125 ~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~l~~~l~~a-Gf~~ 202 (255)
T PRK11036 125 VADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPD-YPLDPEQVYQWLEEA-GWQI 202 (255)
T ss_pred hCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCC-CCCCHHHHHHHHHHC-CCeE
Confidence 245678999999999999999987654321111100 001111111 11232 234689999999985 9998
Q ss_pred EE
Q 043102 519 NL 520 (525)
Q Consensus 519 ~~ 520 (525)
+-
T Consensus 203 ~~ 204 (255)
T PRK11036 203 MG 204 (255)
T ss_pred ee
Confidence 63
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.1e-07 Score=89.92 Aligned_cols=108 Identities=8% Similarity=-0.023 Sum_probs=76.5
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc--------ccCc
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR--------SFGH 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~--------~vg~ 448 (525)
..+||||| ++.+|++ |++|+|+|+|+++++.|+++++..++... |. ++..
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~~~~ 109 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDFIFSTVVFMFLQA 109 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCEEEEecccccCCH
Confidence 35999999 8888885 99999999999999999999887766422 22 2334
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
++.+.++++++++|||||++++......+. +. .. .|..+..+.+++.+.++ ++++...
T Consensus 110 ~~~~~~l~~~~~~LkpgG~lli~~~~~~~~-~~---~~--------~~~~~~~~~~el~~~f~---~~~~~~~ 167 (195)
T TIGR00477 110 GRVPEIIANMQAHTRPGGYNLIVAAMDTAD-YP---CH--------MPFSFTFKEDELRQYYA---DWELLKY 167 (195)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEecccCC-CC---CC--------CCcCccCCHHHHHHHhC---CCeEEEe
Confidence 577899999999999999976654432221 10 00 13345678888887764 3555443
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.7e-07 Score=96.36 Aligned_cols=116 Identities=13% Similarity=0.154 Sum_probs=85.4
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC------C----------c----c----cC
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN------D----------R----S----FG 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D----------~----~----vg 447 (525)
.+||||| ++.+++++ +++|+++|+ +++++.|++++++.|+.++ | . + .+
T Consensus 151 ~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh~~~ 229 (306)
T TIGR02716 151 KKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSAN 229 (306)
T ss_pred CEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhhhcCC
Confidence 4999999 77888874 689999998 7899999999999988765 2 2 1 12
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCC------CCHHHHHHHHHhcCCcEEEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCL------PSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~L------Psl~~i~~~~~~a~gl~V~~ 520 (525)
.+.....++++++.|||||+++|.++...+... ....++..++++.++. +...++.+.++++ ||+.+.
T Consensus 230 ~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~a-Gf~~v~ 303 (306)
T TIGR02716 230 EQLSTIMCKKAFDAMRSGGRLLILDMVIDDPEN----PNFDYLSHYILGAGMPFSVLGFKEQARYKEILESL-GYKDVT 303 (306)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC----chhhHHHHHHHHcccccccccCCCHHHHHHHHHHc-CCCeeE
Confidence 333467899999999999999999987765431 1223455555544332 3467899999995 997554
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.8e-07 Score=89.79 Aligned_cols=157 Identities=17% Similarity=0.220 Sum_probs=99.0
Q ss_pred chhHHHHhhhcccccchHHHHhccccccc----hhccccCCCeehhhc------HHHHHHhcC--CEEEEEcCChHHHHH
Q 043102 362 TLTQACRHISRHYDLSNELFCLFLDESLT----YSCALFKVREVIFLG------TIEVVKRTG--CKYTGITLAEKQLKY 429 (525)
Q Consensus 362 ~~~~s~~nIa~hYDl~nd~y~l~Ld~~m~----ys~a~f~~~rVLDIG------a~~lA~~~G--~~VtGIdlS~eql~~ 429 (525)
.++..+.+++.+||..++........... ......+..+||||| +..+++..+ ++|+|+|+|+++++.
T Consensus 12 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~ 91 (239)
T PRK00216 12 KVAEMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAV 91 (239)
T ss_pred HHHHHHHHhhhhHHHHHHHHhcCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHH
Confidence 33556788888998765544333222110 011222345999999 677777653 899999999999999
Q ss_pred HHHHHHHcCCCCC------------------Ccc-----c-CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccC
Q 043102 430 AGIKVKEADLERN------------------DRS-----F-GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRL 485 (525)
Q Consensus 430 Ar~r~~~~gl~d~------------------D~~-----v-g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~ 485 (525)
|++++...++... |.. + ...+...+++.+.++|+|||++++-++..++... ...
T Consensus 92 a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~--~~~ 169 (239)
T PRK00216 92 GREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPP--LKK 169 (239)
T ss_pred HHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchH--HHH
Confidence 9999866444322 220 1 1346789999999999999999987776554321 000
Q ss_pred chhHHhhcc-------cCC------------CCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 486 SSDFMKEYI-------FPG------------GCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 486 ~~~fi~kYI-------FPG------------g~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
..++....+ +.+ ..+++..++...++++ ||++.-.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-Gf~~~~~ 223 (239)
T PRK00216 170 AYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEA-GFERVRY 223 (239)
T ss_pred HHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhC-CCceeee
Confidence 111111111 111 2457889999999996 9987543
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.6e-07 Score=91.57 Aligned_cols=79 Identities=15% Similarity=0.061 Sum_probs=62.0
Q ss_pred CCeehhhc------HHHHHHh---cCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc--------
Q 043102 398 VREVIFLG------TIEVVKR---TGCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR-------- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~---~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~-------- 444 (525)
..+||||| +..++++ .+++|+|+|+|++|++.|++++++.+...+ |.
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l~ 133 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQ 133 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecchh
Confidence 35999999 6667764 479999999999999999999887654322 22
Q ss_pred ccCcccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 445 SFGHEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 445 ~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
++..++...++++++++|||||++++.+....
T Consensus 134 ~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 134 FLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 23344678999999999999999999876554
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.3e-08 Score=95.02 Aligned_cols=150 Identities=18% Similarity=0.202 Sum_probs=95.1
Q ss_pred chhHHHHhhhcccccchHHHHhccccccch-----hccc-cCCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHH
Q 043102 362 TLTQACRHISRHYDLSNELFCLFLDESLTY-----SCAL-FKVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKY 429 (525)
Q Consensus 362 ~~~~s~~nIa~hYDl~nd~y~l~Ld~~m~y-----s~a~-f~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~ 429 (525)
.++..++.++.+||..|.+.++..+..+.. ...+ -...+||||| +..++++.+.+|+|||+|++|++.
T Consensus 10 ~v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~ 89 (226)
T PRK05785 10 ELQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKM 89 (226)
T ss_pred HHHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence 456789999999999998877666643311 1111 1245999999 777777657899999999999999
Q ss_pred HHHHHHH-------cCCCCC--Cc---c--c-CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcc
Q 043102 430 AGIKVKE-------ADLERN--DR---S--F-GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYI 494 (525)
Q Consensus 430 Ar~r~~~-------~gl~d~--D~---~--v-g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYI 494 (525)
|+++... ..+.+. |. . + ...+.+..++++.|+|||. +++-++..++.... +....|..+++
T Consensus 90 a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~--~~ile~~~p~~~~~--~~~~~~y~~~~ 165 (226)
T PRK05785 90 NLVADDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ--VGFIAMGKPDNVIK--RKYLSFYLRYI 165 (226)
T ss_pred HHhccceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc--eEEEEeCCCCcHHH--HHHHHHHHHHH
Confidence 9987321 112222 44 1 1 1357889999999999993 33445555543211 11112222222
Q ss_pred cC-------C------------CCCCCHHHHHHHHHhcCC
Q 043102 495 FP-------G------------GCLPSLSRITSAMSAASR 515 (525)
Q Consensus 495 FP-------G------------g~LPsl~~i~~~~~~a~g 515 (525)
.| + ..+|+.+++.+.++++.+
T Consensus 166 ~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~~ 205 (226)
T PRK05785 166 MPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYAD 205 (226)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 22 1 135888999999988533
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.6e-07 Score=88.12 Aligned_cols=154 Identities=19% Similarity=0.287 Sum_probs=97.6
Q ss_pred hHHHHhhhcccccchHHHHhccccccc-hhc---cccCCCeehhhc------HHHHHHhcC--CEEEEEcCChHHHHHHH
Q 043102 364 TQACRHISRHYDLSNELFCLFLDESLT-YSC---ALFKVREVIFLG------TIEVVKRTG--CKYTGITLAEKQLKYAG 431 (525)
Q Consensus 364 ~~s~~nIa~hYDl~nd~y~l~Ld~~m~-ys~---a~f~~~rVLDIG------a~~lA~~~G--~~VtGIdlS~eql~~Ar 431 (525)
...++.++++||+.|..+..+.+..+. ... ...+..+|||+| +..+++..+ ++++|+|+|+++++.++
T Consensus 2 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~ 81 (223)
T TIGR01934 2 QEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAK 81 (223)
T ss_pred HhHHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHH
Confidence 457889999999998887655442211 011 111345999999 667777655 69999999999999999
Q ss_pred HHHHHc-CCC-------C---C----Cc-c----c-CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHH
Q 043102 432 IKVKEA-DLE-------R---N----DR-S----F-GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFM 490 (525)
Q Consensus 432 ~r~~~~-gl~-------d---~----D~-~----v-g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi 490 (525)
++.... .+. + . |. . + ...+...+++.+.++|||||++++.....+.... ......+.
T Consensus 82 ~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~--~~~~~~~~ 159 (223)
T TIGR01934 82 KKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANAL--LKKFYKFY 159 (223)
T ss_pred HHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchh--hHHHHHHH
Confidence 987510 010 0 0 22 0 0 2456789999999999999999987775543211 00111111
Q ss_pred hhcccCC-------------------CCCCCHHHHHHHHHhcCCcEEEE
Q 043102 491 KEYIFPG-------------------GCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 491 ~kYIFPG-------------------g~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
.+.++|- ..+++..++.+.++++ ||++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-Gf~~~~ 207 (223)
T TIGR01934 160 LKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEA-GFEEVR 207 (223)
T ss_pred HHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHc-CCccce
Confidence 1112110 2356888999999995 898653
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.7e-08 Score=80.46 Aligned_cols=67 Identities=24% Similarity=0.341 Sum_probs=53.3
Q ss_pred hhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC--------------Cc--------ccCcccHHH
Q 043102 402 IFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN--------------DR--------SFGHEYMEE 453 (525)
Q Consensus 402 LDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~--------------D~--------~vg~~~~~~ 453 (525)
|||| +..++++.+.+|+|+|+|+++++.|+++.+..++.-. |. ++ ++...
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~~ 78 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPEA 78 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHHH
Confidence 7888 6667765589999999999999999999876653211 33 23 78999
Q ss_pred HHHHHHhccCCCcEEEE
Q 043102 454 FFGCCESLIAKDGLFVL 470 (525)
Q Consensus 454 ~f~~i~r~LkpGG~~vi 470 (525)
+++++.|+|||||+++|
T Consensus 79 ~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 79 ALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHcCcCeEEeC
Confidence 99999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3e-07 Score=91.88 Aligned_cols=122 Identities=24% Similarity=0.226 Sum_probs=83.6
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCC--C--------C-Cc-----cc-CcccHHH
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLE--R--------N-DR-----SF-GHEYMEE 453 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~--d--------~-D~-----~v-g~~~~~~ 453 (525)
..+||||| +..++++. +++|+|||+|++|++.|+++.....+. + . |. .+ -..+...
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~d~~~ 111 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIFANASLQWLPDHLE 111 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEEEccChhhCCCHHH
Confidence 35999999 77788764 689999999999999999986432211 0 0 33 11 1346789
Q ss_pred HHHHHHhccCCCcEEEEEEecCCCcc----hhcccCchhHHhhcccCC---CCCCCHHHHHHHHHhcCCcEEEE
Q 043102 454 FFGCCESLIAKDGLFVLQFISIPDER----YNEFRLSSDFMKEYIFPG---GCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 454 ~f~~i~r~LkpGG~~viq~i~~~~~~----~~~~~~~~~fi~kYIFPG---g~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
+++++.++|||||.++++........ ........+|...+..++ ..+|+..++.+.+.++ |+.|..
T Consensus 112 ~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~v~~ 184 (258)
T PRK01683 112 LFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALAPA-ACRVDI 184 (258)
T ss_pred HHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHHhC-CCceee
Confidence 99999999999999999743211111 111122345666665444 5778999999999886 666654
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.8e-07 Score=91.21 Aligned_cols=78 Identities=14% Similarity=0.105 Sum_probs=61.6
Q ss_pred CCeehhhc------HHHHHH---hcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc--------
Q 043102 398 VREVIFLG------TIEVVK---RTGCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR-------- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~---~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~-------- 444 (525)
..+||||| +..+++ ..+++|+|||+|++|++.|+++++..++..+ |.
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l~ 136 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQ 136 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHHH
Confidence 34999999 556665 2479999999999999999999987666433 22
Q ss_pred ccCcccHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 445 SFGHEYMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 445 ~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
++.......++++++++|||||.+++.+...
T Consensus 137 ~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 137 FLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred hCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 3334456789999999999999999987554
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.6e-06 Score=88.60 Aligned_cols=123 Identities=18% Similarity=0.218 Sum_probs=78.6
Q ss_pred cCCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcC-----------CCC-----C-Cc--ccC--
Q 043102 396 FKVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEAD-----------LER-----N-DR--SFG-- 447 (525)
Q Consensus 396 f~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~g-----------l~d-----~-D~--~vg-- 447 (525)
.++.+||||| +..++.. |+ .|+|||.|+.|+..++...+..+ +++ . |. ..+
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~-g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL 198 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGH-GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVL 198 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchh
Confidence 4456999999 5666765 65 79999999999876543222111 111 0 44 111
Q ss_pred --cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHh-hcccCCCCCCCHHHHHHHHHhcCCcEEEEEEe
Q 043102 448 --HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMK-EYIFPGGCLPSLSRITSAMSAASRLWYNLAVS 523 (525)
Q Consensus 448 --~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~-kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~~ 523 (525)
..+...++++++++|||||.+++.++.+.............+.+ +.++ .+||.+++...++++ ||+.+-.+.
T Consensus 199 ~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~---flpS~~~L~~~L~~a-GF~~V~i~~ 273 (314)
T TIGR00452 199 YHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVY---FIPSVSALKNWLEKV-GFENFRILD 273 (314)
T ss_pred hccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccc---cCCCHHHHHHHHHHC-CCeEEEEEe
Confidence 35678999999999999999999987654322111111111111 0112 579999999999995 999876543
|
Known examples to date are restricted to the proteobacteria. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.9e-06 Score=89.80 Aligned_cols=123 Identities=15% Similarity=0.115 Sum_probs=80.1
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc--cc----C
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR--SF----G 447 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~--~v----g 447 (525)
++.+||||| +.++++.....|+|||+|+.|+..++...+..+...+ |. .. .
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~H 201 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLYH 201 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhhc
Confidence 345999999 7788876334799999999998765544332221111 33 11 1
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCC-CCCCHHHHHHHHHhcCCcEEEEEEe
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGG-CLPSLSRITSAMSAASRLWYNLAVS 523 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg-~LPsl~~i~~~~~~a~gl~V~~~~~ 523 (525)
..+...++++++++|||||.+++.++......-........+ .+ +++. .+|+..++...++++ ||+++-..+
T Consensus 202 ~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y-~~--~~~~~~lps~~~l~~~L~~a-GF~~i~~~~ 274 (322)
T PRK15068 202 RRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRY-AK--MRNVYFIPSVPALKNWLERA-GFKDVRIVD 274 (322)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHH-hc--CccceeCCCHHHHHHHHHHc-CCceEEEEe
Confidence 356789999999999999999998876543211000011111 11 2322 479999999999995 999876654
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-06 Score=87.67 Aligned_cols=120 Identities=17% Similarity=0.108 Sum_probs=79.5
Q ss_pred CCeehhhc------HHHHHHhcC--CEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc----cc--
Q 043102 398 VREVIFLG------TIEVVKRTG--CKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR----SF-- 446 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G--~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~----~v-- 446 (525)
..+||||| ++.+++..| .+|+|+|+|++|++.|+++.+..++..- |. .+
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~ 157 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVIN 157 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCccc
Confidence 45999999 455666544 4899999999999999999887765321 22 11
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
...+.+.+|+++.++|||||++++..+...+........ .+.-+..-.+...+..++.+.++++ ||.....
T Consensus 158 ~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~e~~~~l~~a-Gf~~v~i 228 (272)
T PRK11873 158 LSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRN---DAELYAGCVAGALQEEEYLAMLAEA-GFVDITI 228 (272)
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHH---hHHHHhccccCCCCHHHHHHHHHHC-CCCceEE
Confidence 124678899999999999999999887765432111100 0111100012345788899999885 8876543
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.4e-07 Score=88.95 Aligned_cols=96 Identities=18% Similarity=0.208 Sum_probs=72.5
Q ss_pred hHHHHhccccccchhccccC---------------CCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHH
Q 043102 378 NELFCLFLDESLTYSCALFK---------------VREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVK 435 (525)
Q Consensus 378 nd~y~l~Ld~~m~ys~a~f~---------------~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~ 435 (525)
++.+.+.+||.|.+.++... ..+||||| ++.+++ .|+ +|+|+|+|+++++.|+++++
T Consensus 85 ~~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~-~g~~~v~giDis~~~l~~A~~n~~ 163 (250)
T PRK00517 85 PDEINIELDPGMAFGTGTHPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAK-LGAKKVLAVDIDPQAVEAARENAE 163 (250)
T ss_pred CCeEEEEECCCCccCCCCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHH
Confidence 44556778888777666543 23999999 555555 466 59999999999999999999
Q ss_pred HcCCCCC----------Cc---ccCcccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 436 EADLERN----------DR---SFGHEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 436 ~~gl~d~----------D~---~vg~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
..++.+. |. .+....+..+++++.++|||||++++..+.
T Consensus 164 ~~~~~~~~~~~~~~~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 164 LNGVELNVYLPQGDLKADVIVANILANPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred HcCCCceEEEccCCCCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 8887543 22 223345678899999999999999997653
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-06 Score=87.96 Aligned_cols=122 Identities=14% Similarity=0.131 Sum_probs=77.2
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHH---cCCC----CC--Cc-----cc-CcccHHHHH
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKE---ADLE----RN--DR-----SF-GHEYMEEFF 455 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~---~gl~----d~--D~-----~v-g~~~~~~~f 455 (525)
..+||||| +..++++. +++|+|+|+|++|++.|+++-.. ..+. +. |. .+ -..+...++
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~d~~~~l 109 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWKPKPDTDVVVSNAALQWVPEHADLL 109 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCCCCCCceEEEEehhhhhCCCHHHHH
Confidence 35999999 67777763 78999999999999999875110 0000 00 44 00 124678999
Q ss_pred HHHHhccCCCcEEEEEEecCCCcchh-c---ccCchhHHh---hccc-CCCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 456 GCCESLIAKDGLFVLQFISIPDERYN-E---FRLSSDFMK---EYIF-PGGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 456 ~~i~r~LkpGG~~viq~i~~~~~~~~-~---~~~~~~fi~---kYIF-PGg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
++++++|||||+++++.....+.... . ......|-. ..-+ .+..+++..++.+.++++ ||.+..
T Consensus 110 ~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~a-Gf~v~~ 181 (255)
T PRK14103 110 VRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDA-GCKVDA 181 (255)
T ss_pred HHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhC-CCeEEE
Confidence 99999999999999975432111110 0 001112321 1111 134568999999999996 998654
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-06 Score=76.64 Aligned_cols=77 Identities=17% Similarity=0.170 Sum_probs=61.3
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc---ccCcc
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR---SFGHE 449 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~---~vg~~ 449 (525)
..+||||| +..++++. +++|+|+|+|+.+++.|+++++..++... |. ..+..
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~ 99 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG 99 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch
Confidence 34899999 77888764 58999999999999999999887665422 22 11244
Q ss_pred cHHHHHHHHHhccCCCcEEEEEEec
Q 043102 450 YMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 450 ~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
.++++++.+.++|||||++++..++
T Consensus 100 ~~~~~l~~~~~~Lk~gG~li~~~~~ 124 (124)
T TIGR02469 100 LLQEILEAIWRRLRPGGRIVLNAIT 124 (124)
T ss_pred hHHHHHHHHHHHcCCCCEEEEEecC
Confidence 6789999999999999999998763
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR00562 proto_IX_ox protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.4e-06 Score=88.69 Aligned_cols=152 Identities=16% Similarity=0.172 Sum_probs=96.6
Q ss_pred cEEEEeCCCceEeCCEEEEecChHHHHHhhcCCCCHHHHhhccCCc-----eeEeccCCCCCCCCCCCccccccccCCCC
Q 043102 112 SCTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH-----DIFLHCDKNSMPQNPAAWSAWSFLGSLDS 186 (525)
Q Consensus 112 gv~v~~~~g~~e~fD~VV~A~hadqAL~lL~~~~t~~E~~iLg~f~-----~~vlHtD~s~mP~~~~aWaswNy~~~~~~ 186 (525)
++.|++.+|+...||+||+|+|++++.+||.+ ...+..+.|..++ .+.+.-|...++.. +..|-|+...+.
T Consensus 255 ~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~-~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~---~~~~g~l~~~~~ 330 (462)
T TIGR00562 255 NYTLELDNGVTVETDSVVVTAPHKAAAGLLSE-LSNSASSHLDKIHSPPVANVNLGFPEGSVDGE---LEGFGFLISRSS 330 (462)
T ss_pred cEEEEECCCcEEEcCEEEECCCHHHHHHHhcc-cCHHHHHHHhcCCCCceEEEEEEEchHHcCCC---CCceEEEccCCC
Confidence 67888888877889999999999999999974 5566677888877 44555443323221 111222211100
Q ss_pred C--------------CCCCCCCCeE-EEcCCC----------------------------CCCcc-eeeEEEecCCCCCH
Q 043102 187 K--------------NLGETSLPYL-VTLNPD----------------------------HAPEH-TLLKWSTGPPVPFV 222 (525)
Q Consensus 187 ~--------------nl~~~~~~~f-vTLNp~----------------------------~~p~~-il~~~~y~HPv~~~ 222 (525)
. +....+..++ +..... .+|.. .+.+|++.-|++++
T Consensus 331 ~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~gi~~~p~~~~v~rw~~a~P~~~~ 410 (462)
T TIGR00562 331 KFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKKVLNINNEPEMLCVTRWHRAIPQYHV 410 (462)
T ss_pred CCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEeEccccCCCCCC
Confidence 0 0000111222 122110 01333 55699999999998
Q ss_pred HHHHHHHHhhh-hcC-CCCeEEeccCCCCCCchhhhchHHHHHhhhc
Q 043102 223 AASKASLELGH-IQG-RRGIWFRGAYQGYGFHEDGLKDLSINSCMTY 267 (525)
Q Consensus 223 ~a~~aq~~l~~-iqG-~~~~~fcGay~g~GfHEdg~~Sgl~aA~~ll 267 (525)
.......++.. ++. ..+++.||+|+...--|+++.||.++|++++
T Consensus 411 g~~~~~~~i~~~l~~~~~~l~l~G~~~~g~~i~~~i~sg~~~a~~~~ 457 (462)
T TIGR00562 411 GHDQRLKEARELLESAYPGVFLTGNSFEGVGIPDCIDQGKAAASDVL 457 (462)
T ss_pred ChHHHHHHHHHHHHhhCCCEEEeccccCCCcHHHHHHHHHHHHHHHH
Confidence 87666665553 333 3699999999987688999999999999984
|
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-06 Score=87.21 Aligned_cols=153 Identities=15% Similarity=0.095 Sum_probs=94.0
Q ss_pred CchhHHHHhhhcccccchHHHHhccccccchhccccCCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHH
Q 043102 361 NTLTQACRHISRHYDLSNELFCLFLDESLTYSCALFKVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKV 434 (525)
Q Consensus 361 N~~~~s~~nIa~hYDl~nd~y~l~Ld~~m~ys~a~f~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~ 434 (525)
..+++++...+.+||..+.+.+...+.-...... -...+||||| +..+++ .|++|+|+|+|++|++.|+++.
T Consensus 7 ~~i~~~F~~aa~~Y~~~~~~q~~~a~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~v~~~D~s~~~l~~a~~~~ 84 (251)
T PRK10258 7 QAIAAAFGRAAAHYEQHAELQRQSADALLAMLPQ-RKFTHVLDAGCGPGWMSRYWRE-RGSQVTALDLSPPMLAQARQKD 84 (251)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhcCc-cCCCeEEEeeCCCCHHHHHHHH-cCCeEEEEECCHHHHHHHHhhC
Confidence 3456777788888987655554443322211111 1234899999 556666 4899999999999999999885
Q ss_pred HHcCC-----C-----CC--Cc---c--c-CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcc-c
Q 043102 435 KEADL-----E-----RN--DR---S--F-GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYI-F 495 (525)
Q Consensus 435 ~~~gl-----~-----d~--D~---~--v-g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYI-F 495 (525)
....+ + +. |. . + -..+...+++++.++|||||.+++.++.... +.... ..|..-.. .
T Consensus 85 ~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~--~~el~--~~~~~~~~~~ 160 (251)
T PRK10258 85 AADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGS--LPELH--QAWQAVDERP 160 (251)
T ss_pred CCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCc--hHHHH--HHHHHhccCC
Confidence 32111 1 11 33 1 1 1356789999999999999999997665321 11110 11111111 1
Q ss_pred CCCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 496 PGGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 496 PGg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
.+..+++..++...+... ++.+..
T Consensus 161 ~~~~~~~~~~l~~~l~~~-~~~~~~ 184 (251)
T PRK10258 161 HANRFLPPDAIEQALNGW-RYQHHI 184 (251)
T ss_pred ccccCCCHHHHHHHHHhC-Cceeee
Confidence 234567888999888774 666544
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=3e-06 Score=86.64 Aligned_cols=106 Identities=10% Similarity=0.099 Sum_probs=74.5
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc--------ccCcc
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR--------SFGHE 449 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~--------~vg~~ 449 (525)
.+||||| ++++|++ |++|+|+|+|+++++.|++++++.++..+ |. ++..+
T Consensus 122 ~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l~~~ 200 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFLNRE 200 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhCCHH
Confidence 4899999 8888885 99999999999999999999988776322 33 23446
Q ss_pred cHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 450 YMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 450 ~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
+++.+++++.++|||||++++-.....+. +. .. .|..+..+.+|+.+.++. ++|..
T Consensus 201 ~~~~~l~~~~~~LkpgG~~l~v~~~~~~~-~~---~~--------~p~~~~~~~~el~~~~~~---~~i~~ 256 (287)
T PRK12335 201 RIPAIIKNMQEHTNPGGYNLIVCAMDTED-YP---CP--------MPFSFTFKEGELKDYYQD---WEIVK 256 (287)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEeccccc-CC---CC--------CCCCcccCHHHHHHHhCC---CEEEE
Confidence 78999999999999999977643322211 10 00 233445667777766533 56554
|
|
| >PLN02576 protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.6e-05 Score=86.72 Aligned_cols=152 Identities=11% Similarity=0.066 Sum_probs=91.5
Q ss_pred EEEeCCCc-eEeCCEEEEecChHHHHHhhcCCCCHHHHhhccCCc-----eeEeccCCCCCCCCCC---Ccc--------
Q 043102 114 TVVCGDGS-REFYNSCVMALHAPDALKILGNQATFDETRTGGAFH-----DIFLHCDKNSMPQNPA---AWS-------- 176 (525)
Q Consensus 114 ~v~~~~g~-~e~fD~VV~A~hadqAL~lL~~~~t~~E~~iLg~f~-----~~vlHtD~s~mP~~~~---aWa-------- 176 (525)
.+.+.+|. ...||+||+|+|+.++.+||.+ ..++.++.|..++ .+.++-+...++.+.. .+.
T Consensus 274 ~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~-~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~ 352 (496)
T PLN02576 274 TYDTPEGKVNVTAKAVVMTAPLYVVSEMLRP-KSPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPR 352 (496)
T ss_pred EEecCCCceeEEeCEEEECCCHHHHHHHhcc-cCHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccC
Confidence 33333553 5789999999999999999985 6777889999887 5556655443332100 011
Q ss_pred -------ccccccCCCCCCCCCCCCCeEE-Ec---------------------------CC-CC--CCcc-eeeEEEecC
Q 043102 177 -------AWSFLGSLDSKNLGETSLPYLV-TL---------------------------NP-DH--APEH-TLLKWSTGP 217 (525)
Q Consensus 177 -------swNy~~~~~~~nl~~~~~~~fv-TL---------------------------Np-~~--~p~~-il~~~~y~H 217 (525)
.|.|.....+ +..+.+..++. .. -+ .. +|+. ...+|++.-
T Consensus 353 ~~~~~~lg~~~~s~~~p-~~~~~~~~~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~ 431 (496)
T PLN02576 353 KQGVKTLGTIYSSSLFP-DRAPEGRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAI 431 (496)
T ss_pred CCCCceEEEEeecCcCC-CCCCCCCEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCccc
Confidence 1121110000 00000111111 11 01 11 1222 345788888
Q ss_pred CCCCHHHHHHHHHhhh-hcCC--CCeEEeccCCCCCCchhhhchHHHHHhhhc
Q 043102 218 PVPFVAASKASLELGH-IQGR--RGIWFRGAYQGYGFHEDGLKDLSINSCMTY 267 (525)
Q Consensus 218 Pv~~~~a~~aq~~l~~-iqG~--~~~~fcGay~g~GfHEdg~~Sgl~aA~~ll 267 (525)
|+|++........+.. ++.. .++++||+|+...-.|+++.||.++|+.++
T Consensus 432 P~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g~~i~~ai~sg~~aA~~i~ 484 (496)
T PLN02576 432 PQYLLGHLDVLEAAEKMEKDLGLPGLFLGGNYRGGVALGKCVESGYEAADLVI 484 (496)
T ss_pred CCCCcCHHHHHHHHHHHHHhcCCCCEEEeccccCCccHHHHHHHHHHHHHHHH
Confidence 9999877655444444 3333 689999999987789999999999999984
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.26 E-value=5e-06 Score=81.85 Aligned_cols=107 Identities=12% Similarity=0.083 Sum_probs=73.3
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH---------------cC-------C---C----CC
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE---------------AD-------L---E----RN 442 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~---------------~g-------l---~----d~ 442 (525)
..+|||+| ++.+|++ |++|||||+|+..++.|.++... .. + . ..
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~ 113 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP 113 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence 35999999 9999986 99999999999999986442100 00 0 0 00
Q ss_pred -----Cc----ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhc
Q 043102 443 -----DR----SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAA 513 (525)
Q Consensus 443 -----D~----~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a 513 (525)
|. |+..+.++.|++.+.++|||||++++.+....+..+ . -| -+.-+.+++.+.++.
T Consensus 114 fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~----------~---gp-p~~~~~~eL~~~f~~- 178 (213)
T TIGR03840 114 VDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM----------A---GP-PFSVSPAEVEALYGG- 178 (213)
T ss_pred cCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC----------C---Cc-CCCCCHHHHHHHhcC-
Confidence 32 566777899999999999999998887765432210 0 02 145677888877764
Q ss_pred CCcEEEEE
Q 043102 514 SRLWYNLA 521 (525)
Q Consensus 514 ~gl~V~~~ 521 (525)
+++|...
T Consensus 179 -~~~i~~~ 185 (213)
T TIGR03840 179 -HYEIELL 185 (213)
T ss_pred -CceEEEE
Confidence 4565544
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.7e-06 Score=81.21 Aligned_cols=75 Identities=19% Similarity=0.194 Sum_probs=60.6
Q ss_pred CCeehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc--ccCcccHH
Q 043102 398 VREVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR--SFGHEYME 452 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~--~vg~~~~~ 452 (525)
..+||||| ++.+|+. .+++|+|||+|++|++.|++++++.++++- |. .-...+++
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~~~~~ 125 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAVASLS 125 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccccCHH
Confidence 35999999 6666654 579999999999999999999999887532 22 11245689
Q ss_pred HHHHHHHhccCCCcEEEEEE
Q 043102 453 EFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq~ 472 (525)
++++.++++|||||++++..
T Consensus 126 ~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 126 DLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred HHHHHHHHhcCCCeEEEEEe
Confidence 99999999999999999863
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.4e-06 Score=81.26 Aligned_cols=82 Identities=16% Similarity=0.236 Sum_probs=69.1
Q ss_pred CCeehhhc------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc-------------------
Q 043102 398 VREVIFLG------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEADLERN------DR------------------- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------------------- 444 (525)
..+||||| ++.+|+. .+++|++||++++..+.|++.++++|++++ |+
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 34999999 8888875 378999999999999999999999999876 33
Q ss_pred --ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcc
Q 043102 445 --SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDER 479 (525)
Q Consensus 445 --~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~ 479 (525)
...+.+|..||+.+.++|+|||.++++.+......
T Consensus 126 FiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V 162 (205)
T PF01596_consen 126 FIDADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSV 162 (205)
T ss_dssp EEESTGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGG
T ss_pred EEcccccchhhHHHHHhhhccCCeEEEEcccccccee
Confidence 11367899999999999999999999988776543
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.1e-06 Score=82.17 Aligned_cols=82 Identities=15% Similarity=0.176 Sum_probs=65.0
Q ss_pred cccCCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc--------
Q 043102 394 ALFKVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR-------- 444 (525)
Q Consensus 394 a~f~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~-------- 444 (525)
.+.+..++|||| |++||++ |..||++|+|+.-++.+++.+++.+++.+ |.
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~I~st~v~~ 105 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDFIVSTVVFM 105 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEEEEEESSGG
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCEEEEEEEec
Confidence 344556999999 9999996 99999999999999999999988888643 22
Q ss_pred ccCcccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 445 SFGHEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 445 ~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
++..+..+..++.+...++|||.+++.+....
T Consensus 106 fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~ 137 (192)
T PF03848_consen 106 FLQRELRPQIIENMKAATKPGGYNLIVTFMET 137 (192)
T ss_dssp GS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--
T ss_pred cCCHHHHHHHHHHHHhhcCCcEEEEEEEeccc
Confidence 33467889999999999999999999776543
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.5e-06 Score=83.32 Aligned_cols=79 Identities=16% Similarity=0.234 Sum_probs=68.6
Q ss_pred Ceehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC-------Cc-----------------cc
Q 043102 399 REVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN-------DR-----------------SF 446 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-------D~-----------------~v 446 (525)
.+||||| ++.+|... ..++|+||+++++.+.|++.++++|++++ |+ ..
T Consensus 61 k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFIDa 140 (219)
T COG4122 61 KRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFIDA 140 (219)
T ss_pred ceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEeC
Confidence 4999999 78888652 57999999999999999999999999886 33 22
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEecCCC
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFISIPD 477 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~ 477 (525)
.+.+|+.||+.+.++|+|||.++++.+..+.
T Consensus 141 dK~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 141 DKADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred ChhhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 4789999999999999999999999987764
|
|
| >PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO) | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.7e-06 Score=86.81 Aligned_cols=81 Identities=19% Similarity=0.237 Sum_probs=60.4
Q ss_pred HHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCceEeCCEEEEecChHHHHH-hhcCCCCHHHHhhccCCc
Q 043102 79 ESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGSREFYNSCVMALHAPDALK-ILGNQATFDETRTGGAFH 157 (525)
Q Consensus 79 ~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~~e~fD~VV~A~hadqAL~-lL~~~~t~~E~~iLg~f~ 157 (525)
+..|.++.++..+.+|..+. .+|.|...+|+...||+||+|++...+.+ .+........++.+..++
T Consensus 220 ~~~g~~i~l~~~V~~I~~~~------------~~v~v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~l~~~~~~a~~~~~ 287 (450)
T PF01593_consen 220 EELGGEIRLNTPVTRIERED------------GGVTVTTEDGETIEADAVISAVPPSVLKNILLLPPLPEDKRRAIENLP 287 (450)
T ss_dssp HHHGGGEESSEEEEEEEEES------------SEEEEEETTSSEEEESEEEE-S-HHHHHTSEEESTSHHHHHHHHHTEE
T ss_pred hhcCceeecCCcceeccccc------------cccccccccceEEecceeeecCchhhhhhhhhcccccccccccccccc
Confidence 33578898888888887633 37889999998899999999999999996 444323333556666666
Q ss_pred -----eeEeccCCCCCCCC
Q 043102 158 -----DIFLHCDKNSMPQN 171 (525)
Q Consensus 158 -----~~vlHtD~s~mP~~ 171 (525)
.++++-|...++..
T Consensus 288 ~~~~~~v~l~~~~~~~~~~ 306 (450)
T PF01593_consen 288 YSSVSKVFLGFDRPFWPPD 306 (450)
T ss_dssp EEEEEEEEEEESSGGGGST
T ss_pred cCcceeEEEeeeccccccc
Confidence 89999999988875
|
The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A .... |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.4e-06 Score=81.67 Aligned_cols=116 Identities=22% Similarity=0.356 Sum_probs=79.2
Q ss_pred cCCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc--------cc
Q 043102 396 FKVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR--------SF 446 (525)
Q Consensus 396 f~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~--------~v 446 (525)
.+..+||||| +..+++. +.+|+|+|+|+++++.|++++...+..++ |. |.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~ 132 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHY 132 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhC
Confidence 3456999999 6777764 88999999999999999999977654322 32 33
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCC------CCCCCHHHHHHHHHhcCCcEEEE
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPG------GCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPG------g~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
..++....++++.+++++++.+.+. +...+. ....++.+ .||+ -+.++.+++.+.++++ ||++..
T Consensus 133 ~~~~~~~~l~~i~~~~~~~~~i~~~----~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~-Gf~v~~ 203 (219)
T TIGR02021 133 PASDMAKALGHLASLTKERVIFTFA----PKTAWL---AFLKMIGE-LFPGSSRATSAYLHPMTDLERALGEL-GWKIVR 203 (219)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEEC----CCchHH---HHHHHHHh-hCcCcccccceEEecHHHHHHHHHHc-Cceeee
Confidence 4456788899999999977655432 111110 11223322 2433 3456889999999885 999875
Q ss_pred E
Q 043102 521 A 521 (525)
Q Consensus 521 ~ 521 (525)
.
T Consensus 204 ~ 204 (219)
T TIGR02021 204 E 204 (219)
T ss_pred e
Confidence 4
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.7e-06 Score=76.65 Aligned_cols=112 Identities=18% Similarity=0.183 Sum_probs=74.6
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCC-------C-CC-Cc--------ccCcccHHHH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADL-------E-RN-DR--------SFGHEYMEEF 454 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl-------~-d~-D~--------~vg~~~~~~~ 454 (525)
..+||||| +..+++ .|++|+|+|+|+.+++. .+...... . .. |. |+ ++...+
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~-~~~~~~g~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~--~d~~~~ 97 (161)
T PF13489_consen 23 GKRVLDIGCGTGSFLRALAK-RGFEVTGVDISPQMIEK--RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHL--PDPEEF 97 (161)
T ss_dssp TSEEEEESSTTSHHHHHHHH-TTSEEEEEESSHHHHHH--TTSEEEEEECHTHHCHSSSEEEEEEESSGGGS--SHHHHH
T ss_pred CCEEEEEcCCCCHHHHHHHH-hCCEEEEEECCHHHHhh--hhhhhhhhhhhhhhccccchhhHhhHHHHhhc--ccHHHH
Confidence 45999999 566655 59999999999999988 11000000 0 00 33 33 478999
Q ss_pred HHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccC---CCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 455 FGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFP---GGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 455 f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFP---Gg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
++++.++|||||++++.+....... . .....| .|..+ ....-+.+++...++++ ||+|+-
T Consensus 98 l~~l~~~LkpgG~l~~~~~~~~~~~-~--~~~~~~--~~~~~~~~~~~~~~~~~~~~ll~~~-G~~iv~ 160 (161)
T PF13489_consen 98 LKELSRLLKPGGYLVISDPNRDDPS-P--RSFLKW--RYDRPYGGHVHFFSPDELRQLLEQA-GFEIVE 160 (161)
T ss_dssp HHHHHHCEEEEEEEEEEEEBTTSHH-H--HHHHHC--CGTCHHTTTTEEBBHHHHHHHHHHT-TEEEEE
T ss_pred HHHHHHhcCCCCEEEEEEcCCcchh-h--hHHHhc--CCcCccCceeccCCHHHHHHHHHHC-CCEEEE
Confidence 9999999999999999988754211 0 001111 22222 23456899999999996 999874
|
... |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.5e-05 Score=82.97 Aligned_cols=114 Identities=19% Similarity=0.248 Sum_probs=72.6
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC------------------CC-Cc--------
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE------------------RN-DR-------- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~------------------d~-D~-------- 444 (525)
..+||||| ++.++++ |++|+|+|+|++|++.|++++++.+.. .. |.
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~vL~ 223 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDVLI 223 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCEEE
Confidence 34999999 7888875 999999999999999999998765211 00 33
Q ss_pred ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCC------CCCCHHHHHHHHHhcCCcEE
Q 043102 445 SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGG------CLPSLSRITSAMSAASRLWY 518 (525)
Q Consensus 445 ~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg------~LPsl~~i~~~~~~a~gl~V 518 (525)
|+..+.....++.+.+ +++||.+ |.. .+...+ + .....+.+ +|||. ++.+.+++.+.++++ ||+|
T Consensus 224 H~p~~~~~~ll~~l~~-l~~g~li-Is~--~p~~~~--~-~~l~~~g~-~~~g~~~~~r~y~~s~eel~~lL~~A-Gf~v 294 (315)
T PLN02585 224 HYPQDKADGMIAHLAS-LAEKRLI-ISF--APKTLY--Y-DILKRIGE-LFPGPSKATRAYLHAEADVERALKKA-GWKV 294 (315)
T ss_pred ecCHHHHHHHHHHHHh-hcCCEEE-EEe--CCcchH--H-HHHHHHHh-hcCCCCcCceeeeCCHHHHHHHHHHC-CCEE
Confidence 3334445566777765 4555554 422 121110 0 01111222 46653 456899999999995 9998
Q ss_pred EEE
Q 043102 519 NLA 521 (525)
Q Consensus 519 ~~~ 521 (525)
...
T Consensus 295 ~~~ 297 (315)
T PLN02585 295 ARR 297 (315)
T ss_pred EEE
Confidence 643
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.8e-05 Score=83.21 Aligned_cols=112 Identities=15% Similarity=0.043 Sum_probs=75.4
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCC------------CC--Ccc-----c-CcccH
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLE------------RN--DRS-----F-GHEYM 451 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~------------d~--D~~-----v-g~~~~ 451 (525)
.+||||| ++.+++.. +.+|+|+|+|++|++.|+++.+..++. +. |.. + ...+.
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~ 194 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDP 194 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCCCH
Confidence 4999999 56667654 579999999999999999986432221 11 331 1 12456
Q ss_pred HHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccC-CCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 452 EEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFP-GGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFP-Gg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
+..++++.++|||||++++-....++ .|+.++.-. ....|+.+++.+.++++ ||+.+-.
T Consensus 195 ~~~L~e~~rvLkPGG~LvIi~~~~p~----------~~~~r~~~~~~~~~~t~eEl~~lL~~a-GF~~V~i 254 (340)
T PLN02490 195 QRGIKEAYRVLKIGGKACLIGPVHPT----------FWLSRFFADVWMLFPKEEEYIEWFTKA-GFKDVKL 254 (340)
T ss_pred HHHHHHHHHhcCCCcEEEEEEecCcc----------hhHHHHhhhhhccCCCHHHHHHHHHHC-CCeEEEE
Confidence 78999999999999999875433222 122221100 11347899999999995 9986543
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.2e-05 Score=77.61 Aligned_cols=77 Identities=23% Similarity=0.284 Sum_probs=61.4
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC-------------------Cc---cc
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN-------------------DR---SF 446 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-------------------D~---~v 446 (525)
+..+|||+| ++.+|+.. +++|+++|+|+++++.|+++++..|+.++ |. ..
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 445999999 66776643 47999999999999999999988875433 22 12
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
+...+..+++.+.++|||||+++++.+
T Consensus 120 ~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 120 GSEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CcccHHHHHHHHHHHcCCCcEEEEEee
Confidence 356788999999999999999998665
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.3e-06 Score=76.82 Aligned_cols=97 Identities=10% Similarity=0.071 Sum_probs=63.5
Q ss_pred EEEcCChHHHHHHHHHHHHcC--CCCC------------------Cc---ccC---cccHHHHHHHHHhccCCCcEEEEE
Q 043102 418 TGITLAEKQLKYAGIKVKEAD--LERN------------------DR---SFG---HEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 418 tGIdlS~eql~~Ar~r~~~~g--l~d~------------------D~---~vg---~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
+|||+|++|++.|+++.+..+ ...+ |. ..+ ..+...++++++|+|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 599999999999988865322 1111 33 111 357889999999999999999999
Q ss_pred EecCCCcchhccc-------------------CchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEE
Q 043102 472 FISIPDERYNEFR-------------------LSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWY 518 (525)
Q Consensus 472 ~i~~~~~~~~~~~-------------------~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V 518 (525)
++..++..+.... ....++...| ...|+.+++.+.++++ ||.-
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si---~~f~~~~el~~ll~~a-GF~~ 142 (160)
T PLN02232 81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSI---NGYLTGEELETLALEA-GFSS 142 (160)
T ss_pred ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHH---HHCcCHHHHHHHHHHc-CCCc
Confidence 9887654322100 0001111111 1458899999999985 8874
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.8e-05 Score=76.86 Aligned_cols=105 Identities=16% Similarity=0.157 Sum_probs=71.4
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC--------------C----------------
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE--------------R---------------- 441 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~--------------d---------------- 441 (525)
..+|||+| ++.||++ |++|+|||+|+.-++.|.++ .++. .
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~~---~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFAE---NGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHHH---cCCCccccccccccccccCceEEEECcccCCCccc
Confidence 35999999 8999985 99999999999999976432 1111 0
Q ss_pred --C-----Cc----ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHH
Q 043102 442 --N-----DR----SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAM 510 (525)
Q Consensus 442 --~-----D~----~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~ 510 (525)
. |. |+..+.+++|++.+.++|||||+.++-+....+... .. .| +.-+.+++.+.+
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~----------~g--Pp--~~~~~~el~~~~ 179 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEEL----------AG--PP--FSVSDEEVEALY 179 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccC----------CC--CC--CCCCHHHHHHHh
Confidence 0 22 566777899999999999999976654444332210 00 11 356788888877
Q ss_pred HhcCCcEEEEEE
Q 043102 511 SAASRLWYNLAV 522 (525)
Q Consensus 511 ~~a~gl~V~~~~ 522 (525)
+. +++|....
T Consensus 180 ~~--~~~i~~~~ 189 (218)
T PRK13255 180 AG--CFEIELLE 189 (218)
T ss_pred cC--CceEEEee
Confidence 54 36666543
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=98.08 E-value=1e-05 Score=77.64 Aligned_cols=74 Identities=19% Similarity=0.177 Sum_probs=59.3
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc--ccCcccHH
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR--SFGHEYME 452 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~--~vg~~~~~ 452 (525)
..+||||| ++.+|+.. +++|+|||+|++|++.|++++++.++++- |. .-+..+++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~~~~~~ 122 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRALASLN 122 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehhhhCHH
Confidence 45999999 66767543 57999999999999999999988877432 22 11245788
Q ss_pred HHHHHHHhccCCCcEEEEE
Q 043102 453 EFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq 471 (525)
.+++.+.++|||||++++.
T Consensus 123 ~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 123 VLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred HHHHHHHHhcCCCCEEEEE
Confidence 9999999999999999975
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.4e-05 Score=76.33 Aligned_cols=77 Identities=18% Similarity=0.212 Sum_probs=60.7
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc-ccC--cccHH
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR-SFG--HEYME 452 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~-~vg--~~~~~ 452 (525)
..+||||| ++.++++. +++|+++|+|+++++.|+++++..++.+- |. .++ ..++.
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~~~~~ 111 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGGNLT 111 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCccCHH
Confidence 34999999 67777764 58999999999999999999887665321 33 111 34688
Q ss_pred HHHHHHHhccCCCcEEEEEEec
Q 043102 453 EFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq~i~ 474 (525)
.+++.+.++|||||+++++.+.
T Consensus 112 ~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 112 AIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred HHHHHHHHhcCCCeEEEEEEec
Confidence 9999999999999999997654
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.6e-05 Score=76.61 Aligned_cols=77 Identities=12% Similarity=0.056 Sum_probs=60.8
Q ss_pred CCeehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----Cc---------------ccCccc
Q 043102 398 VREVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN-----DR---------------SFGHEY 450 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D~---------------~vg~~~ 450 (525)
+.+|||+| ++.+++. .+++|++||+|+++++.|++++++.++.+- |+ ..+...
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~~~~ 120 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEGGRP 120 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEECCcC
Confidence 35999999 6677754 368999999999999999999988776421 22 112346
Q ss_pred HHHHHHHHHhccCCCcEEEEEEec
Q 043102 451 MEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
+..+++++.++|||||++++....
T Consensus 121 ~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 121 IKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred HHHHHHHHHHhcCCCeEEEEEeec
Confidence 789999999999999999998764
|
|
| >PRK11883 protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00011 Score=78.45 Aligned_cols=150 Identities=13% Similarity=0.140 Sum_probs=88.0
Q ss_pred cEEEEeCCCceEeCCEEEEecChHHHHHhhcCCCCHHHHhhccCCc-----eeEeccCCCC--CCCCCCC----------
Q 043102 112 SCTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH-----DIFLHCDKNS--MPQNPAA---------- 174 (525)
Q Consensus 112 gv~v~~~~g~~e~fD~VV~A~hadqAL~lL~~~~t~~E~~iLg~f~-----~~vlHtD~s~--mP~~~~a---------- 174 (525)
+|.|.+.+|+.+.||+||+|+++.++++++.+ +. -.+.+..++ .+.+--|... .|.....
T Consensus 251 ~~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~-~~--~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (451)
T PRK11883 251 GYEIVLSNGGEIEADAVIVAVPHPVLPSLFVA-PP--AFALFKTIPSTSVATVALAFPESATNLPDGTGFLVARNSDYTI 327 (451)
T ss_pred eEEEEECCCCEEEcCEEEECCCHHHHHHhccC-hh--HHHHHhCCCCCceEEEEEEeccccCCCCCceEEEecCCCCCcE
Confidence 67888888888999999999999999999873 32 244555555 4444444432 1110000
Q ss_pred -ccccccccCCCCCCCCCCCCCeEE-EcC-C---------------------------CCCCcc-eeeEEEecCCCCCHH
Q 043102 175 -WSAWSFLGSLDSKNLGETSLPYLV-TLN-P---------------------------DHAPEH-TLLKWSTGPPVPFVA 223 (525)
Q Consensus 175 -WaswNy~~~~~~~nl~~~~~~~fv-TLN-p---------------------------~~~p~~-il~~~~y~HPv~~~~ 223 (525)
+..|+-... + +..+.+..++. ..+ + ...|.. ...+|.+.-|.+.+.
T Consensus 328 ~~~~~~s~~~--~-~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~rw~~a~p~~~~~ 404 (451)
T PRK11883 328 TACTWTSKKW--P-HTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKVMGITGDPEFTIVQRWKEAMPQYGVG 404 (451)
T ss_pred EEEEeEcCcC--C-CCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHHHhCCCCCceEEEEeecCccCCCCCcc
Confidence 001110000 0 01000111111 110 1 001112 445889999998887
Q ss_pred HHHHHHHhhh-hcCCCCeEEeccCCCCCCchhhhchHHHHHhhhc
Q 043102 224 ASKASLELGH-IQGRRGIWFRGAYQGYGFHEDGLKDLSINSCMTY 267 (525)
Q Consensus 224 a~~aq~~l~~-iqG~~~~~fcGay~g~GfHEdg~~Sgl~aA~~ll 267 (525)
.......+.. +..-.+++|||+|+..+--|+++.||..+|+.++
T Consensus 405 ~~~~~~~l~~~l~~~~~l~~aG~~~~g~~i~~av~sg~~~a~~i~ 449 (451)
T PRK11883 405 HIERVAELRAGLPHYPGLYVAGASFEGVGLPDCIAQAKRAAARLL 449 (451)
T ss_pred HHHHHHHHHHhhhhCCCEEEECcccCCccHHHHHHHHHHHHHHHH
Confidence 6555544443 3223589999999986679999999999999873
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.3e-05 Score=82.23 Aligned_cols=75 Identities=23% Similarity=0.333 Sum_probs=59.3
Q ss_pred Ceehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc---ccCcccHH
Q 043102 399 REVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIKVKEADLERN----------------DR---SFGHEYME 452 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~---~vg~~~~~ 452 (525)
.+|||+| ++.+++. | .+|+|+|+|+.+++.|+++++..++.++ |. .+....+.
T Consensus 161 ~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~~l~ 239 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAEVIK 239 (288)
T ss_pred CEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHHHHH
Confidence 4999999 6666664 5 4999999999999999999988777554 11 11234567
Q ss_pred HHHHHHHhccCCCcEEEEEEec
Q 043102 453 EFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq~i~ 474 (525)
.+++++.++|||||++++..+.
T Consensus 240 ~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 240 ELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred HHHHHHHHHcCCCcEEEEEeCc
Confidence 8999999999999999987664
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.8e-06 Score=81.44 Aligned_cols=105 Identities=10% Similarity=0.091 Sum_probs=73.3
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc-ccCccc
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR-SFGHEY 450 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~-~vg~~~ 450 (525)
+..+||||| +..+|+.. .++|+|||+|+++++.|++++++.|+..- |. .+. ..
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~-~~ 155 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVT-AA 155 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEc-CC
Confidence 345999999 66777753 34799999999999999999998887422 22 111 11
Q ss_pred HHHHHHHHHhccCCCcEEEEEEecCCCcchhcc-cCchhHHhhcccCCCCCCCH
Q 043102 451 MEEFFGCCESLIAKDGLFVLQFISIPDERYNEF-RLSSDFMKEYIFPGGCLPSL 503 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~-~~~~~fi~kYIFPGg~LPsl 503 (525)
...+.+.+.+.|||||++++.... .......+ +....|..+.++|..++|-.
T Consensus 156 ~~~~~~~~~~~L~~gG~lv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 208 (215)
T TIGR00080 156 GPKIPEALIDQLKEGGILVMPVGE-YLQVLKRAEKRGGEIIIKDVEPVAFVPLV 208 (215)
T ss_pred cccccHHHHHhcCcCcEEEEEEcC-CceEEEEEEEeCCEEEEEEeeeEEEEeCC
Confidence 344567788999999999986544 33332222 23456888888888887754
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=4e-05 Score=74.20 Aligned_cols=121 Identities=15% Similarity=0.044 Sum_probs=73.7
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc-c----c-
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR-S----F- 446 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~-~----v- 446 (525)
+..+||||| +..+++.. +++|+|+|+|+++++.|+++....+-... |. + +
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 98 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQ 98 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechhh
Confidence 345999999 67777765 47999999999999999998322111000 22 0 1
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcc-c-CchhHHhhcccCCC-CCCCHHHHHHHHHhcCCcEEE
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEF-R-LSSDFMKEYIFPGG-CLPSLSRITSAMSAASRLWYN 519 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~-~-~~~~fi~kYIFPGg-~LPsl~~i~~~~~~a~gl~V~ 519 (525)
...+...+++++.++|||||.+++.........+... . ....++..+ .+.. ...+..++.+.++++ ||+++
T Consensus 99 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~a-Gf~~~ 172 (241)
T PRK08317 99 HLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFW-SDHFADPWLGRRLPGLFREA-GLTDI 172 (241)
T ss_pred ccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHc-CCCce
Confidence 1357889999999999999999987653221111100 0 011122222 1111 122345777788885 88654
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.8e-05 Score=71.07 Aligned_cols=76 Identities=14% Similarity=0.185 Sum_probs=56.8
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC--------------Cc--------ccC-
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN--------------DR--------SFG- 447 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~--------------D~--------~vg- 447 (525)
+..+|||+| ++.+++. +.+|+|+|+|+++++.|+++++..++... |. +..
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~~ 97 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLED 97 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCcc
Confidence 345899999 6677765 56999999999999999999876654321 22 110
Q ss_pred ------------------cccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 448 ------------------HEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 448 ------------------~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
..-+.++++++.++|||||++++...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 98 DLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred hhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 11257889999999999999988653
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.1e-05 Score=72.34 Aligned_cols=76 Identities=22% Similarity=0.383 Sum_probs=61.1
Q ss_pred Ceehhhc------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------C--------c--c---c-
Q 043102 399 REVIFLG------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEADLERN----------D--------R--S---F- 446 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------D--------~--~---v- 446 (525)
.+|||+| +..++++ .+++|+|||+|++|++.|++++++.+++.- + . . .
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~l~ 84 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGVLH 84 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEESTGG
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCchh
Confidence 4899999 7777743 378999999999999999999998887621 2 1 0 0
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
...+...+++++.++||+||.+++....
T Consensus 85 ~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 85 HFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp GTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 1345678999999999999999998876
|
... |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=97.97 E-value=8.9e-06 Score=69.71 Aligned_cols=66 Identities=21% Similarity=0.359 Sum_probs=50.6
Q ss_pred ehhhc------HHHHHHhc--C--CEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc---------c
Q 043102 401 VIFLG------TIEVVKRT--G--CKYTGITLAEKQLKYAGIKVKEADLERN----------------DR---------S 445 (525)
Q Consensus 401 VLDIG------a~~lA~~~--G--~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~---------~ 445 (525)
|||+| +..+++.. + .+++|||+|+++++.|+++.++.+..-+ |. |
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 78999 55666543 4 8999999999999999999988665322 22 4
Q ss_pred cCcccHHHHHHHHHhccCCCc
Q 043102 446 FGHEYMEEFFGCCESLIAKDG 466 (525)
Q Consensus 446 vg~~~~~~~f~~i~r~LkpGG 466 (525)
+..+....+|+++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 456778999999999999998
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.9e-05 Score=73.64 Aligned_cols=121 Identities=17% Similarity=0.253 Sum_probs=79.1
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Ccc-----c-Cc
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DRS-----F-GH 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~~-----v-g~ 448 (525)
..+||||| +..+++ .+++|+|+|+|+++++.|++++...++... |.. + ..
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~ 127 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMAR-LGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV 127 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHH-cCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc
Confidence 45899999 666676 489999999999999999998876554211 221 1 13
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccC-----CCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFP-----GGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFP-----Gg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
.+...+++.+.++|+|||++++..+......+........++.. +.| ...+++..++.+.++++ ||++...
T Consensus 128 ~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~-Gf~~v~~ 203 (233)
T PRK05134 128 PDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLR-MLPKGTHDYKKFIKPSELAAWLRQA-GLEVQDI 203 (233)
T ss_pred CCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhh-hcCcccCchhhcCCHHHHHHHHHHC-CCeEeee
Confidence 46788999999999999999987653221111000000111111 111 23467888999999995 9997643
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.4e-05 Score=76.55 Aligned_cols=81 Identities=12% Similarity=0.134 Sum_probs=67.4
Q ss_pred CCeehhhc------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc-------------------
Q 043102 398 VREVIFLG------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEADLERN------DR------------------- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------------------- 444 (525)
..+||||| ++.+|+. .+.+|+++|.+++.++.|++.++++|++++ |+
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 34999999 7888864 256899999999999999999999999865 33
Q ss_pred --ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCc
Q 043102 445 --SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDE 478 (525)
Q Consensus 445 --~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~ 478 (525)
...+++|..||+.+.++|+|||.++++.+.....
T Consensus 199 FIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~ 234 (278)
T PLN02476 199 FVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGR 234 (278)
T ss_pred EECCCHHHHHHHHHHHHHhcCCCcEEEEecCccCCc
Confidence 0124679999999999999999999998876543
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.95 E-value=6.4e-05 Score=75.00 Aligned_cols=80 Identities=11% Similarity=0.145 Sum_probs=65.1
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc------------------
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN------DR------------------ 444 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------------------ 444 (525)
...+||||| ++.+|+.. +++|+++|++++.++.|++++++.|++++ |+
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 345999999 56666542 57999999999999999999999999765 22
Q ss_pred ---ccCcccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 445 ---SFGHEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 445 ---~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
...++.|..|+..+.++|||||.++++.+...
T Consensus 148 VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn~l~~ 182 (234)
T PLN02781 148 AFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTLWF 182 (234)
T ss_pred EEECCCHHHHHHHHHHHHHhcCCCeEEEEEcCCcC
Confidence 11246789999999999999999999887654
|
|
| >PRK12416 protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00027 Score=76.47 Aligned_cols=147 Identities=16% Similarity=0.142 Sum_probs=91.2
Q ss_pred cEEEEeCCCceEeCCEEEEecChHHHHHhhcCCCCHHHHhhccCCc-----eeEeccCCC--CCCCCCCCccccccccCC
Q 043102 112 SCTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH-----DIFLHCDKN--SMPQNPAAWSAWSFLGSL 184 (525)
Q Consensus 112 gv~v~~~~g~~e~fD~VV~A~hadqAL~lL~~~~t~~E~~iLg~f~-----~~vlHtD~s--~mP~~~~aWaswNy~~~~ 184 (525)
++.|.+.+|....+|+||+|++++++.+||.+ +.. .+.+..++ .++++-|.. ..|..- +-|+.+.
T Consensus 256 ~~~v~~~~g~~~~ad~VI~a~p~~~~~~ll~~-~~l--~~~~~~~~~~~~~~v~l~~~~~~~~~~~~g-----~G~l~~~ 327 (463)
T PRK12416 256 RYEISFANHESIQADYVVLAAPHDIAETLLQS-NEL--NEQFHTFKNSSLISIYLGFDILDEQLPADG-----TGFIVTE 327 (463)
T ss_pred EEEEEECCCCEEEeCEEEECCCHHHHHhhcCC-cch--hHHHhcCCCCceEEEEEEechhhcCCCCCc-----eEEEeeC
Confidence 57888888877889999999999999999974 432 22345554 666676633 223211 1111111
Q ss_pred CC----------C----CCCCCCCCeEEEc-----CCCC---------------------------CCcc-eeeEEEecC
Q 043102 185 DS----------K----NLGETSLPYLVTL-----NPDH---------------------------APEH-TLLKWSTGP 217 (525)
Q Consensus 185 ~~----------~----nl~~~~~~~fvTL-----Np~~---------------------------~p~~-il~~~~y~H 217 (525)
+. + +... +.++.+++ ++.. +|.. .+.+|.+..
T Consensus 328 ~~~~~~~~~~~~s~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~~~~L~~~lG~~~~p~~~~v~~W~~a~ 406 (463)
T PRK12416 328 NSDLHCDACTWTSRKWKHTSG-KQKLLVRMFYKSTNPVYETIKNYSEEELVRVALYDIEKSLGIKGEPEVVEVTNWKDLM 406 (463)
T ss_pred CCCCeEEEEEeecCCCCCcCC-CCeEEEEEEeCCCCCCchhhhcCCHHHHHHHHHHHHHHHhCCCCCceEEEEEEccccC
Confidence 00 0 1111 23333332 1110 1112 455888889
Q ss_pred CCCCHHHHHHHHHhhh-hcC-CCCeEEeccCCCCCCchhhhchHHHHHhhhc
Q 043102 218 PVPFVAASKASLELGH-IQG-RRGIWFRGAYQGYGFHEDGLKDLSINSCMTY 267 (525)
Q Consensus 218 Pv~~~~a~~aq~~l~~-iqG-~~~~~fcGay~g~GfHEdg~~Sgl~aA~~ll 267 (525)
|+|.+...+..+.+.. ++. ..++++||+|+...--|+++.||.++|+.++
T Consensus 407 P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g~~i~~ai~sg~~aA~~i~ 458 (463)
T PRK12416 407 PKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYGVGIGACIGNGKNTANEII 458 (463)
T ss_pred CCcCcCHHHHHHHHHHHHHhhCCCeEEeccccccccHHHHHHHHHHHHHHHH
Confidence 9998887666555553 333 3799999999876567999999999999984
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.88 E-value=9.9e-05 Score=71.82 Aligned_cols=120 Identities=19% Similarity=0.279 Sum_probs=77.8
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC-CC-----------------Ccc-----c-C
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE-RN-----------------DRS-----F-G 447 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~-d~-----------------D~~-----v-g 447 (525)
..+||||| +..+++ .+++|+|+|+|+++++.|++++...++. .. |.. + .
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLAR-LGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CCeEEEECCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 45999999 566666 4889999999999999999998776552 11 220 0 1
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCC----CCCCCHHHHHHHHHhcCCcEEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPG----GCLPSLSRITSAMSAASRLWYN 519 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPG----g~LPsl~~i~~~~~~a~gl~V~ 519 (525)
..+...+++.+.++|+|||.+++.........+.......+++.....++ ..+.+..++.+.++++ ||+|.
T Consensus 125 ~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-G~~i~ 199 (224)
T TIGR01983 125 VPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESA-GLRVK 199 (224)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc-CCeee
Confidence 34678899999999999999988654322111100000011221111111 2345788899999985 99985
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=97.84 E-value=7.3e-05 Score=72.96 Aligned_cols=114 Identities=19% Similarity=0.217 Sum_probs=74.5
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc--------ccCc
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR--------SFGH 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~--------~vg~ 448 (525)
..+||||| +..+++. +++|+|+|+|+++++.|+++....++.++ |. |+..
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~~~ 142 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHYPQ 142 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcCCH
Confidence 34999999 6777775 88999999999999999999887766322 32 3344
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCC------CCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPG------GCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPG------g~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
+.....++.+.+++++++.+.+ . .....+ ....++.+ .||+ ....+..++.+.++++ ||++...
T Consensus 143 ~~~~~~l~~l~~~~~~~~~i~~--~-~~~~~~----~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~-Gf~~~~~ 212 (230)
T PRK07580 143 EDAARMLAHLASLTRGSLIFTF--A-PYTPLL----ALLHWIGG-LFPGPSRTTRIYPHREKGIRRALAAA-GFKVVRT 212 (230)
T ss_pred HHHHHHHHHHHhhcCCeEEEEE--C-CccHHH----HHHHHhcc-ccCCccCCCCccccCHHHHHHHHHHC-CCceEee
Confidence 5677888999888765444332 1 111111 11222222 2332 3445778899988885 9997654
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.3e-06 Score=72.78 Aligned_cols=65 Identities=18% Similarity=0.332 Sum_probs=45.8
Q ss_pred hhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC-------------------Cc--------ccC
Q 043102 402 IFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN-------------------DR--------SFG 447 (525)
Q Consensus 402 LDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-------------------D~--------~vg 447 (525)
|||| +..++++ .+.++||+|+|+.|++.|++++.+.+.... |. |+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 6888 4455554 478999999999999999999988663221 22 33
Q ss_pred cccHHHHHHHHHhccCCCcEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLF 468 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~ 468 (525)
++.+.+++.++++|||||++
T Consensus 80 -~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred -hhHHHHHHHHHHHcCCCCCC
Confidence 78899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.81 E-value=3.8e-05 Score=74.06 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=57.6
Q ss_pred Ceehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----Cc------------------ccCc
Q 043102 399 REVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN-----DR------------------SFGH 448 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D~------------------~vg~ 448 (525)
++||||| +..+|++ .+++|+|||+|+++++.|++++++.++..- |. +.+.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pd 97 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFPD 97 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECCC
Confidence 4999999 6677776 378999999999999999999988776421 11 1110
Q ss_pred c-----c------HHHHHHHHHhccCCCcEEEEEEe
Q 043102 449 E-----Y------MEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 449 ~-----~------~~~~f~~i~r~LkpGG~~viq~i 473 (525)
. + .+.+++++.++|||||.+++.+-
T Consensus 98 pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 98 PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 0 0 26799999999999999988753
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00052 Score=72.74 Aligned_cols=149 Identities=14% Similarity=0.115 Sum_probs=82.4
Q ss_pred cEEEEeCCCceEeCCEEEEecChHHHHHhhcCCCCHHHHhhccCCc-----eeEeccCCCCCCCCCCCccccccccCC--
Q 043102 112 SCTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH-----DIFLHCDKNSMPQNPAAWSAWSFLGSL-- 184 (525)
Q Consensus 112 gv~v~~~~g~~e~fD~VV~A~hadqAL~lL~~~~t~~E~~iLg~f~-----~~vlHtD~s~mP~~~~aWaswNy~~~~-- 184 (525)
++.+...+|....+|+||+|+++.++.+||.. ..+..++.+..+. .+.++-|..+.+ ..|..+......
T Consensus 230 ~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~ 305 (434)
T PRK07233 230 GVTGVEVDGEEEDFDAVISTAPPPILARLVPD-LPADVLARLRRIDYQGVVCMVLKLRRPLTD---YYWLNINDPGAPFG 305 (434)
T ss_pred ceEEEEeCCceEECCEEEECCCHHHHHhhcCC-CcHHHHhhhcccCccceEEEEEEecCCCCC---CceeeecCCCCCcc
Confidence 34444456667889999999999999999963 4444445565555 556776665433 122211000000
Q ss_pred ---CCCCCCC----CCCCe-EE--EcCCCCC---------------------C----cc----eeeEEEecCCCCCHHHH
Q 043102 185 ---DSKNLGE----TSLPY-LV--TLNPDHA---------------------P----EH----TLLKWSTGPPVPFVAAS 225 (525)
Q Consensus 185 ---~~~nl~~----~~~~~-fv--TLNp~~~---------------------p----~~----il~~~~y~HPv~~~~a~ 225 (525)
...|..+ ..++. .+ ..++..+ | +. -+.+|.|..|.+++...
T Consensus 306 ~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~~~g~~ 385 (434)
T PRK07233 306 GVIEHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIYEPGYL 385 (434)
T ss_pred eEEEecccCCccccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCCChhheeeEEEEEeccccccccCchh
Confidence 0001110 01222 11 1221110 1 11 22356778888765522
Q ss_pred HHHHHhhhh-cCCCCeEEeccCCCC---CCchhhhchHHHHHhhhc
Q 043102 226 KASLELGHI-QGRRGIWFRGAYQGY---GFHEDGLKDLSINSCMTY 267 (525)
Q Consensus 226 ~aq~~l~~i-qG~~~~~fcGay~g~---GfHEdg~~Sgl~aA~~ll 267 (525)
..+..+ +...+++|||+++.+ +.-|+|+.||..||+.++
T Consensus 386 ---~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~ 428 (434)
T PRK07233 386 ---DKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREIL 428 (434)
T ss_pred ---hcCCCcccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHh
Confidence 223333 345899999997532 279999999999999984
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.76 E-value=7.8e-05 Score=75.18 Aligned_cols=80 Identities=6% Similarity=0.089 Sum_probs=66.9
Q ss_pred CCeehhhc------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc-------------------
Q 043102 398 VREVIFLG------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEADLERN------DR------------------- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------------------- 444 (525)
..+||||| ++.+|+. .+++|++++.+++..+.|++.++++|+.++ |+
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 34999999 7777764 368999999999999999999999999876 22
Q ss_pred ---ccCcccHHHHHHHHHhccCCCcEEEEEEecCCC
Q 043102 445 ---SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPD 477 (525)
Q Consensus 445 ---~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~ 477 (525)
...+++|..||+.+.++|+|||.++++.+....
T Consensus 160 iFiDadK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G 195 (247)
T PLN02589 160 IFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNG 195 (247)
T ss_pred EEecCCHHHhHHHHHHHHHhcCCCeEEEEcCCCCCC
Confidence 112567999999999999999999999886654
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=6e-05 Score=73.40 Aligned_cols=75 Identities=9% Similarity=0.092 Sum_probs=54.9
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc-ccCcc
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR-SFGHE 449 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~-~vg~~ 449 (525)
++.+||||| +..+++.. +++|+|+|+|+++++.|+++++..++.++ |. .+. .
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~-~ 150 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT-A 150 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEc-c
Confidence 345999999 55666653 47999999999999999999988776532 22 111 1
Q ss_pred cHHHHHHHHHhccCCCcEEEEEE
Q 043102 450 YMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 450 ~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
-...+-+++.+.|||||++++..
T Consensus 151 ~~~~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 151 AASTIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred CcchhhHHHHHhcCcCcEEEEEE
Confidence 12344578899999999998854
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00027 Score=66.41 Aligned_cols=74 Identities=22% Similarity=0.337 Sum_probs=57.1
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-------C-----------ccc-------
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-------D-----------RSF------- 446 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-------D-----------~~v------- 446 (525)
..+|||+| +..++++ +++|+|+|+|+++++.|+++++..++.++ | ..+
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~~~ 102 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPYLP 102 (188)
T ss_pred CCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCcCC
Confidence 45899999 6777876 99999999999999999999887766531 1 100
Q ss_pred --------------------CcccHHHHHHHHHhccCCCcEEEEEE
Q 043102 447 --------------------GHEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 447 --------------------g~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
+...++.+++++.++|||||.+++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 103 TEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred CCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 01225678999999999999988753
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0001 Score=76.08 Aligned_cols=76 Identities=20% Similarity=0.254 Sum_probs=60.7
Q ss_pred CCCeehhhc-------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHH-cCCCCC------------------Cc----
Q 043102 397 KVREVIFLG-------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKE-ADLERN------------------DR---- 444 (525)
Q Consensus 397 ~~~rVLDIG-------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~-~gl~d~------------------D~---- 444 (525)
...+||||| ++-++++ .+++++|+|+|+++++.|++.++. .|+.++ |.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 335999999 5555543 478999999999999999999964 777654 22
Q ss_pred -ccC--cccHHHHHHHHHhccCCCcEEEEEE
Q 043102 445 -SFG--HEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 445 -~vg--~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.++ .++..++++.+.+.|+|||.+++..
T Consensus 203 ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 223 4789999999999999999999986
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=9e-05 Score=73.14 Aligned_cols=118 Identities=9% Similarity=0.131 Sum_probs=73.9
Q ss_pred Ceehhhc------HHHHHHh-----cCCEEEEEcCChHHHHHHHHHHHHcCCCCC--------------Cc--------c
Q 043102 399 REVIFLG------TIEVVKR-----TGCKYTGITLAEKQLKYAGIKVKEADLERN--------------DR--------S 445 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~-----~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~--------------D~--------~ 445 (525)
.+||||| +..+++. .+++|+|+|+|++|++.|+++.+..++... |. |
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lhh 141 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFLHH 141 (232)
T ss_pred cEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCeeec
Confidence 4999999 5555542 246999999999999999998754333211 33 4
Q ss_pred cCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccC-chhHHh-hcccCCC-----CCCCHHHHHHHHHhcCCcEE
Q 043102 446 FGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRL-SSDFMK-EYIFPGG-----CLPSLSRITSAMSAASRLWY 518 (525)
Q Consensus 446 vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~-~~~fi~-kYIFPGg-----~LPsl~~i~~~~~~a~gl~V 518 (525)
+..+....+++++.++++ |.+++..+..+...|..+.. ...+.+ .++-..+ ..++.+|+.+.+++ ||++
T Consensus 142 ~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~--Gf~~ 217 (232)
T PRK06202 142 LDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ--GWRV 217 (232)
T ss_pred CChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC--CCeE
Confidence 444456789999999998 56666666554322211111 111111 1111111 34788899998887 8987
Q ss_pred EE
Q 043102 519 NL 520 (525)
Q Consensus 519 ~~ 520 (525)
..
T Consensus 218 ~~ 219 (232)
T PRK06202 218 ER 219 (232)
T ss_pred Ee
Confidence 64
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.70 E-value=8.4e-05 Score=72.27 Aligned_cols=74 Identities=22% Similarity=0.278 Sum_probs=56.3
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC--------------------Cc---ccCc
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN--------------------DR---SFGH 448 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~--------------------D~---~vg~ 448 (525)
.+||||| +..+++.. +++|+|||+|+++++.|+++++..++..- |. ....
T Consensus 42 ~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~ 121 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPD 121 (202)
T ss_pred CeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCC
Confidence 4899999 66777653 67999999999999999999887665311 11 1010
Q ss_pred -----------ccHHHHHHHHHhccCCCcEEEEEE
Q 043102 449 -----------EYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 449 -----------~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
...+.+++++.++|||||++++.+
T Consensus 122 p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 122 PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 015789999999999999999864
|
|
| >TIGR03467 HpnE squalene-associated FAD-dependent desaturase | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00018 Score=75.73 Aligned_cols=47 Identities=19% Similarity=0.160 Sum_probs=36.3
Q ss_pred CCCceEeCCEEEEecChHHHHHhhcCCCCHHHHhhccCCc-----eeEeccCCCC
Q 043102 118 GDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH-----DIFLHCDKNS 167 (525)
Q Consensus 118 ~~g~~e~fD~VV~A~hadqAL~lL~~~~t~~E~~iLg~f~-----~~vlHtD~s~ 167 (525)
.+|+...+|+||+|++++++.+||.. ++.++.|..++ .++++-|..+
T Consensus 236 ~~g~~~~~d~vi~a~p~~~~~~ll~~---~~~~~~l~~~~~~~~~~v~l~~~~~~ 287 (419)
T TIGR03467 236 SGGETLPADAVVLAVPPRHAASLLPG---EDLGALLTALGYSPITTVHLRLDRAV 287 (419)
T ss_pred cCCccccCCEEEEcCCHHHHHHhCCC---chHHHHHhhcCCcceEEEEEEeCCCc
Confidence 35666789999999999999999963 24555677766 6778888766
|
The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0003 Score=70.04 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=53.0
Q ss_pred CCCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHc-CC-------C---------CC-Cc--c-cCc
Q 043102 397 KVREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEA-DL-------E---------RN-DR--S-FGH 448 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~-gl-------~---------d~-D~--~-vg~ 448 (525)
+..+|||+| +..+++.. +.+|+|+|+|++|++.+.+++++. ++ . +. |. | +..
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~~ 151 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDVAQ 151 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEECCCC
Confidence 345999999 77778764 369999999999999887776542 11 0 01 33 1 221
Q ss_pred c-cHHHHHHHHHhccCCCcEEEEE
Q 043102 449 E-YMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 449 ~-~~~~~f~~i~r~LkpGG~~viq 471 (525)
. ....+++++.++|||||+++|.
T Consensus 152 p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 152 PNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 1 2245689999999999999985
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=9e-05 Score=64.47 Aligned_cols=71 Identities=18% Similarity=0.358 Sum_probs=56.8
Q ss_pred eehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHHHHHcCCCCC--------------------Cc------cc
Q 043102 400 EVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIKVKEADLERN--------------------DR------SF 446 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r~~~~gl~d~--------------------D~------~v 446 (525)
+|||+| ++.+++. + .+|+|+|++++.++.|+.+++..+++++ |. .+
T Consensus 3 ~vlD~~~G~G~~~~~~~~~-~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRR-GAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYG 81 (117)
T ss_dssp EEEEETSTTCHHHHHHHHH-CTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STT
T ss_pred EEEEcCcchHHHHHHHHHH-CCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCc
Confidence 799999 5555654 6 9999999999999999999999888655 11 11
Q ss_pred C--------cccHHHHHHHHHhccCCCcEEEEE
Q 043102 447 G--------HEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 447 g--------~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
. .+.+..+++++.++|||||.+++-
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 82 PRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp SBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 1 124678999999999999999874
|
... |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00015 Score=74.89 Aligned_cols=78 Identities=21% Similarity=0.273 Sum_probs=58.1
Q ss_pred Ceehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcC--CCCC----------------C---c-----
Q 043102 399 REVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEAD--LERN----------------D---R----- 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~g--l~d~----------------D---~----- 444 (525)
.+|||+| +..+++.. +.+|+|||+|++|++.|++++.+.. +.-. + .
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~ 144 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFP 144 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEe
Confidence 4899999 66677653 6899999999999999999976522 2100 1 1
Q ss_pred -----ccCcccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 445 -----SFGHEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 445 -----~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
++..++...+|++++++|+|||+++|..-...
T Consensus 145 gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~ 181 (301)
T TIGR03438 145 GSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVK 181 (301)
T ss_pred cccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 22345677899999999999999998654443
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00012 Score=82.42 Aligned_cols=81 Identities=14% Similarity=0.185 Sum_probs=59.5
Q ss_pred cCCCeehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc------
Q 043102 396 FKVREVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR------ 444 (525)
Q Consensus 396 f~~~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~------ 444 (525)
.++.+||||| +..+++. .+++|+|+|+|++|++.|+++....+.... |.
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 3456999999 5566765 478999999999999999998755432110 22
Q ss_pred -c-c-----------CcccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 445 -S-F-----------GHEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 445 -~-v-----------g~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
| + ..++...++++++++|||||++++.+...+
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 1 1 124567899999999999999999865443
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=6e-05 Score=74.27 Aligned_cols=75 Identities=23% Similarity=0.333 Sum_probs=57.8
Q ss_pred eehhhc-----HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHc---------CCCCC----Cc-----------------
Q 043102 400 EVIFLG-----TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEA---------DLERN----DR----------------- 444 (525)
Q Consensus 400 rVLDIG-----a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~---------gl~d~----D~----------------- 444 (525)
-||||| +-...+..|..++|||||+.|++.|.++--+. |+..+ |.
T Consensus 53 ~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~ 132 (270)
T KOG1541|consen 53 LILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSL 132 (270)
T ss_pred EEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccc
Confidence 699999 22333345999999999999999999754332 23322 33
Q ss_pred ccCcccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 445 SFGHEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 445 ~vg~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
|+.++.+..||..++.+||+|+++++|.--
T Consensus 133 ~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 133 HVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred cChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 667778899999999999999999999753
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00025 Score=68.85 Aligned_cols=108 Identities=16% Similarity=0.186 Sum_probs=69.5
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHc-----------CCCCC--Cc----cc-C-cccH
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEA-----------DLERN--DR----SF-G-HEYM 451 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~-----------gl~d~--D~----~v-g-~~~~ 451 (525)
..+||||| +..+++.. .++|+|+|+|+++++.|+++.... .+.+. |. ++ . ..+.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~ 114 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDL 114 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccCH
Confidence 35899999 66777653 478999999999999999886420 00111 33 11 1 2467
Q ss_pred HHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhc
Q 043102 452 EEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAA 513 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a 513 (525)
..+++++.++|||||.+++.......-. .......+ .+..+++..++...+.++
T Consensus 115 ~~~l~~~~~~L~~~G~l~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~l~~~ 168 (240)
T TIGR02072 115 SQALSELARVLKPGGLLAFSTFGPGTLH-----ELRQSFGQ---HGLRYLSLDELKALLKNS 168 (240)
T ss_pred HHHHHHHHHHcCCCcEEEEEeCCccCHH-----HHHHHHHH---hccCCCCHHHHHHHHHHh
Confidence 8999999999999999999765433210 01111111 234566777777776663
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=6.1e-05 Score=73.83 Aligned_cols=75 Identities=15% Similarity=0.098 Sum_probs=54.5
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc-ccCccc
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR-SFGHEY 450 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~-~vg~~~ 450 (525)
+..+||||| +..+++.. +++|+|+|+++++++.|++++++.|++.- |. .+.. .
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~-~ 154 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA-A 154 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC-C
Confidence 345999999 55566553 47999999999999999999998776421 33 1211 1
Q ss_pred HHHHHHHHHhccCCCcEEEEEE
Q 043102 451 MEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.++..+.+.+.|||||++++..
T Consensus 155 ~~~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 155 GPDIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cccchHHHHHhhCCCcEEEEEE
Confidence 2344567888999999998853
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00063 Score=70.25 Aligned_cols=121 Identities=17% Similarity=0.241 Sum_probs=79.1
Q ss_pred CCeehhhc------HHHHHHhcCC-EEEEEcCChH---HHHHHHHHHHHc--------CCCCC------Cc--ccC----
Q 043102 398 VREVIFLG------TIEVVKRTGC-KYTGITLAEK---QLKYAGIKVKEA--------DLERN------DR--SFG---- 447 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~-~VtGIdlS~e---ql~~Ar~r~~~~--------gl~d~------D~--~vg---- 447 (525)
+.+||||| +.+++++ |+ .|+|||-|.- |...+++.+... |+++- |. ++|
T Consensus 116 gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVLYH 194 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVLYH 194 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeehhc
Confidence 34999999 8888876 76 6999999875 444444444211 22211 44 344
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHh-hcccCCCCCCCHHHHHHHHHhcCCcEEEEEEe
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMK-EYIFPGGCLPSLSRITSAMSAASRLWYNLAVS 523 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~-kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~~ 523 (525)
.++--..++++.+.|+|||.+++++..+....-........+.+ +-+| .+||...+..-++++ ||+-+-.++
T Consensus 195 rr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~---FiPs~~~L~~wl~r~-gF~~v~~v~ 267 (315)
T PF08003_consen 195 RRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVW---FIPSVAALKNWLERA-GFKDVRCVD 267 (315)
T ss_pred cCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceE---EeCCHHHHHHHHHHc-CCceEEEec
Confidence 56777889999999999999999998876532111111111110 1122 679999999999996 887655543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00028 Score=75.38 Aligned_cols=123 Identities=17% Similarity=0.213 Sum_probs=81.9
Q ss_pred cccchHHHHhccccccchhccccCCCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCC--C--
Q 043102 374 YDLSNELFCLFLDESLTYSCALFKVREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLER--N-- 442 (525)
Q Consensus 374 YDl~nd~y~l~Ld~~m~ys~a~f~~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d--~-- 442 (525)
-|.+..|+.-.+.+.. .++|||+| ++.++++. +++|+++|+|+.+++.|+++++..+.+. +
T Consensus 213 LD~GtrllL~~lp~~~--------~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~ 284 (378)
T PRK15001 213 LDIGARFFMQHLPENL--------EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCE 284 (378)
T ss_pred cChHHHHHHHhCCccc--------CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEE
Confidence 4666667665555321 24899999 77888764 6899999999999999999987655321 1
Q ss_pred ---------------Cc-------ccCc----ccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccC
Q 043102 443 ---------------DR-------SFGH----EYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFP 496 (525)
Q Consensus 443 ---------------D~-------~vg~----~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFP 496 (525)
|. |.+. ....++|+.+.++|||||.+++-.- ++.. -...+++ +|.
T Consensus 285 ~~~~D~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n-----r~l~---y~~~L~~-~fg 355 (378)
T PRK15001 285 FMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN-----RHLD---YFHKLKK-IFG 355 (378)
T ss_pred EEEccccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe-----cCcC---HHHHHHH-HcC
Confidence 22 3332 2346889999999999999988632 1111 2355666 463
Q ss_pred CCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 497 GGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 497 Gg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
.. +.+.+..+|.|.-++
T Consensus 356 ~~---------~~va~~~kf~vl~a~ 372 (378)
T PRK15001 356 NC---------TTIATNNKFVVLKAV 372 (378)
T ss_pred Cc---------eEEccCCCEEEEEEE
Confidence 32 124555688888765
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00019 Score=72.35 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=60.2
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC--------------------Cc-------
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN--------------------DR------- 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~--------------------D~------- 444 (525)
.+||||| ++.+|+++ .++|+||++++++.+.|++.++..+++++ |.
T Consensus 46 ~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPy 125 (248)
T COG4123 46 GRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPY 125 (248)
T ss_pred CeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCCC
Confidence 4999999 67788874 49999999999999999999999888877 11
Q ss_pred -----------------ccCcccHHHHHHHHHhccCCCcEEEE
Q 043102 445 -----------------SFGHEYMEEFFGCCESLIAKDGLFVL 470 (525)
Q Consensus 445 -----------------~vg~~~~~~~f~~i~r~LkpGG~~vi 470 (525)
|...-+++++++.+.++|||||.+.+
T Consensus 126 f~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~ 168 (248)
T COG4123 126 FKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF 168 (248)
T ss_pred CCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence 11233688999999999999999976
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00024 Score=72.85 Aligned_cols=73 Identities=15% Similarity=0.309 Sum_probs=57.5
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cccc--------
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DRSF-------- 446 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~~v-------- 446 (525)
.+|||+| ++.++++. +++|+|+|+|+++++.|+++++..|+.++ |..+
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~~~ 202 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYVDA 202 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCCCc
Confidence 4899999 77778763 68999999999999999999988776543 1100
Q ss_pred -----------------------CcccHHHHHHHHHhccCCCcEEEEE
Q 043102 447 -----------------------GHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 447 -----------------------g~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
|.+.+..+++.+.++|||||++++.
T Consensus 203 ~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 203 EDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred cchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1123577899999999999999874
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00077 Score=66.31 Aligned_cols=76 Identities=17% Similarity=0.306 Sum_probs=56.1
Q ss_pred CCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC---------------Ccc------c---
Q 043102 398 VREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN---------------DRS------F--- 446 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~~------v--- 446 (525)
+.+|||+| ++.+++. ++ +|+|+|+|+++++.|+++++..++... |.. +
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~~~ 115 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYVPAP 115 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCCCCC
Confidence 45999999 6677764 65 999999999999999999877654211 220 0
Q ss_pred ------------------CcccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 447 ------------------GHEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 447 ------------------g~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
+...+..+++++.++|||||++++-...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 116 PDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred cccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 0112567899999999999999975443
|
|
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0052 Score=66.79 Aligned_cols=181 Identities=12% Similarity=0.144 Sum_probs=102.7
Q ss_pred HHHHHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCc--eEeCCEEEEecChHHHHHhhcCCCCHHHHhhc
Q 043102 76 ELFESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGS--REFYNSCVMALHAPDALKILGNQATFDETRTG 153 (525)
Q Consensus 76 ~~~~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~--~e~fD~VV~A~hadqAL~lL~~~~t~~E~~iL 153 (525)
+-.++.|+++..+..+.++..+.++. ..++.....+|. +..+|+||+|+++..++++|......+.++.+
T Consensus 226 ~~l~~~g~~i~~~~~V~~I~~~~~~~--------v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~~~~~~~~~~ 297 (479)
T PRK07208 226 EKLEALGGKVVLNAKVVGLHHDGDGR--------IAVVVVNDTDGTEETVTADQVISSMPLRELVAALDPPPPPEVRAAA 297 (479)
T ss_pred HHHHHcCCEEEeCCEEEEEEEcCCcE--------EEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCCCCCHHHHHHH
Confidence 33344477777777766665532210 001222223453 46699999999999999999743445555666
Q ss_pred cCCc-----eeEeccCCC-CCCCCCCCccccccccCCC--------CCCCC----CCCCCeEEEc----CCCC-------
Q 043102 154 GAFH-----DIFLHCDKN-SMPQNPAAWSAWSFLGSLD--------SKNLG----ETSLPYLVTL----NPDH------- 204 (525)
Q Consensus 154 g~f~-----~~vlHtD~s-~mP~~~~aWaswNy~~~~~--------~~nl~----~~~~~~fvTL----Np~~------- 204 (525)
..++ .+.++-|.. ..|. . |-|....+ ..|+. +.+++.++.+ ....
T Consensus 298 ~~l~~~~~~~v~l~~~~~~~~~~---~---~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~d 371 (479)
T PRK07208 298 AGLRYRDFITVGLLVKELNLFPD---N---WIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSD 371 (479)
T ss_pred hCCCcceeEEEEEEecCCCCCCC---c---eEEecCCCCccceecccccCCcccCCCCCceEEEEEEEccCCCccccCCH
Confidence 6665 555666643 2222 1 22221100 00111 1112233211 1000
Q ss_pred -----------------CCcc----eeeEEEecCCCCCHHHHHHHHHhhh-hcCCCCeEEeccCC--CCCCchhhhchHH
Q 043102 205 -----------------APEH----TLLKWSTGPPVPFVAASKASLELGH-IQGRRGIWFRGAYQ--GYGFHEDGLKDLS 260 (525)
Q Consensus 205 -----------------~p~~----il~~~~y~HPv~~~~a~~aq~~l~~-iqG~~~~~fcGay~--g~GfHEdg~~Sgl 260 (525)
+.++ .+.+|.+.=|+|++...+....+.. ++...|+++||.|. .|---|+++.||+
T Consensus 372 eel~~~~~~~L~~l~~~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~~~~d~a~~sg~ 451 (479)
T PRK07208 372 EDLIALAIQELARLGLIRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRYNNQDHSMLTAM 451 (479)
T ss_pred HHHHHHHHHHHHHcCCCChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeeccccccccCChhHHHHHHH
Confidence 0111 2446778889999888777666553 45568999999654 3445789999999
Q ss_pred HHHhhhcCCc
Q 043102 261 INSCMTYGEE 270 (525)
Q Consensus 261 ~aA~~llG~~ 270 (525)
++|+.++...
T Consensus 452 ~~a~~i~~~~ 461 (479)
T PRK07208 452 LAVENIIAGE 461 (479)
T ss_pred HHHHHHhcCC
Confidence 9999986553
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00024 Score=74.88 Aligned_cols=74 Identities=12% Similarity=0.149 Sum_probs=58.9
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC--------------Cc-------ccC---
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN--------------DR-------SFG--- 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~--------------D~-------~vg--- 447 (525)
++||||| ++.++++. +++|+++|+|+.+++.|++++++.++..+ |. |-|
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIvsNPPFH~g~~~ 277 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMIISNPPFHDGIQT 277 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEEECCCccCCccc
Confidence 4899999 67777763 57999999999999999999988776433 22 322
Q ss_pred -cccHHHHHHHHHhccCCCcEEEEEE
Q 043102 448 -HEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 448 -~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.....++++++.+.|||||.++|-.
T Consensus 278 ~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 278 SLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred cHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 2346799999999999999998854
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00037 Score=76.00 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=57.3
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHc--------CC-------CCC--Cc--------cc
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEA--------DL-------ERN--DR--------SF 446 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~--------gl-------~d~--D~--------~v 446 (525)
..+||||| +..+++. +.+|+|||+|+++++.++++.... .+ .+. |. |+
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l 116 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYL 116 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHhC
Confidence 34899999 7788875 789999999999999887643210 11 001 33 33
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
..+....+++++.++|||||++++.+.+..
T Consensus 117 ~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~ 146 (475)
T PLN02336 117 SDKEVENLAERMVKWLKVGGYIFFRESCFH 146 (475)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEeccCC
Confidence 444578999999999999999999876543
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00053 Score=67.58 Aligned_cols=120 Identities=22% Similarity=0.186 Sum_probs=83.7
Q ss_pred eehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------Cc----ccC--cccHHHHH
Q 043102 400 EVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN-----------DR----SFG--HEYMEEFF 455 (525)
Q Consensus 400 rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------D~----~vg--~~~~~~~f 455 (525)
+|.||| +..++++ .++.|+|||-|++|++.|+++.-.+..+.- |- ++- .++..+.|
T Consensus 33 ~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllfaNAvlqWlpdH~~ll 112 (257)
T COG4106 33 RVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLFANAVLQWLPDHPELL 112 (257)
T ss_pred eeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhhhhhhhhhccccHHHH
Confidence 899999 6777887 489999999999999999999765544222 22 111 35678999
Q ss_pred HHHHhccCCCcEEEEEEecCCCcchh----cccCchhHHhhccc---CCCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 456 GCCESLIAKDGLFVLQFISIPDERYN----EFRLSSDFMKEYIF---PGGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 456 ~~i~r~LkpGG~~viq~i~~~~~~~~----~~~~~~~fi~kYIF---PGg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
..+-..|.|||.+.+|.-..-++... +.....+|-+.+-= -..-+||++.+.+.+... +-+|.+
T Consensus 113 ~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa~~-~~rvDi 183 (257)
T COG4106 113 PRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLAPL-ACRVDI 183 (257)
T ss_pred HHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhCcc-cceeee
Confidence 99999999999999996544433321 11223356655311 145789999999988764 555543
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00037 Score=72.39 Aligned_cols=73 Identities=16% Similarity=0.321 Sum_probs=57.5
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc------cc--
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR------SF-- 446 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~------~v-- 446 (525)
.+|||+| ++.++++. +++|+|+|+|+++++.|+++++..++.++ |. .+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 3899999 67777764 68999999999999999999988776543 11 00
Q ss_pred -----------------------CcccHHHHHHHHHhccCCCcEEEEE
Q 043102 447 -----------------------GHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 447 -----------------------g~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
|.+.+..+++.+.++|||||++++.
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1233578899999999999999984
|
|
| >PLN02268 probable polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0044 Score=66.49 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=42.1
Q ss_pred cEEEEeCCCceEeCCEEEEecChHHHHHh-hcCCC--CHHHHhhccCCc-----eeEeccCCCCCCC
Q 043102 112 SCTVVCGDGSREFYNSCVMALHAPDALKI-LGNQA--TFDETRTGGAFH-----DIFLHCDKNSMPQ 170 (525)
Q Consensus 112 gv~v~~~~g~~e~fD~VV~A~hadqAL~l-L~~~~--t~~E~~iLg~f~-----~~vlHtD~s~mP~ 170 (525)
+|.|++.+|++..+|+||+|+|+..+.++ +.-.| ++.-++.+..+. .++++-|..+.|.
T Consensus 228 ~v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~ 294 (435)
T PLN02268 228 GVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPN 294 (435)
T ss_pred cEEEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCC
Confidence 68898888877899999999999987553 32222 333345555555 8889988877765
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0003 Score=66.44 Aligned_cols=74 Identities=23% Similarity=0.359 Sum_probs=58.9
Q ss_pred CCCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc-------cc
Q 043102 397 KVREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR-------SF 446 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~-------~v 446 (525)
...+||||| ++.++++. ..+|+++|+|++.++.|++.++..++++- |. +-
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 345999999 77888763 34799999999999999999999887621 22 22
Q ss_pred Cc----ccHHHHHHHHHhccCCCcEEEE
Q 043102 447 GH----EYMEEFFGCCESLIAKDGLFVL 470 (525)
Q Consensus 447 g~----~~~~~~f~~i~r~LkpGG~~vi 470 (525)
|. .-..++++.+.+.|||||.+++
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 32 2578999999999999999976
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00025 Score=69.07 Aligned_cols=105 Identities=13% Similarity=0.087 Sum_probs=66.2
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------CcccCcccHHHH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DRSFGHEYMEEF 454 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~~vg~~~~~~~ 454 (525)
..+||||| +..+++. ..+|+++|+|+++++.|++++++.++..- |..+-......+
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~ 157 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPEI 157 (212)
T ss_pred CCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCchhh
Confidence 35999999 5556665 56999999999999999999988776421 221101123345
Q ss_pred HHHHHhccCCCcEEEEEEecCCCcchhccc-CchhHHhhcccCCCCCCCH
Q 043102 455 FGCCESLIAKDGLFVLQFISIPDERYNEFR-LSSDFMKEYIFPGGCLPSL 503 (525)
Q Consensus 455 f~~i~r~LkpGG~~viq~i~~~~~~~~~~~-~~~~fi~kYIFPGg~LPsl 503 (525)
.+.+.+.|||||++++............+. ....|..+.+|+-.+.|.+
T Consensus 158 ~~~l~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 207 (212)
T PRK00312 158 PRALLEQLKEGGILVAPVGGEEQQLLTRVRKRGGRFEREVLEEVRFVPLV 207 (212)
T ss_pred hHHHHHhcCCCcEEEEEEcCCCceEEEEEEEcCCeEEEEEEccEEEEecC
Confidence 677889999999999865411111111121 2334555556665555543
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00029 Score=71.58 Aligned_cols=72 Identities=15% Similarity=0.186 Sum_probs=52.4
Q ss_pred eehhhc----------HHHHHHhc------CCEEEEEcCChHHHHHHHHHHHH----cCC--------------------
Q 043102 400 EVIFLG----------TIEVVKRT------GCKYTGITLAEKQLKYAGIKVKE----ADL-------------------- 439 (525)
Q Consensus 400 rVLDIG----------a~~lA~~~------G~~VtGIdlS~eql~~Ar~r~~~----~gl-------------------- 439 (525)
+|||+| |+.+++.. +.+|+|+|+|+++++.|++.+-. .++
T Consensus 102 ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~ 181 (264)
T smart00138 102 RIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKP 181 (264)
T ss_pred EEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEECh
Confidence 999999 45555532 47999999999999999986410 010
Q ss_pred -------------CCC-------Cc--------ccCcccHHHHHHHHHhccCCCcEEEEE
Q 043102 440 -------------ERN-------DR--------SFGHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 440 -------------~d~-------D~--------~vg~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
.+. |. ++..+.....+++++++|||||++++.
T Consensus 182 ~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 182 ELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred HHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 000 33 334466778999999999999999984
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00044 Score=73.98 Aligned_cols=75 Identities=16% Similarity=0.225 Sum_probs=59.4
Q ss_pred Ceehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----Cc-----------------ccCc-
Q 043102 399 REVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN-----DR-----------------SFGH- 448 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D~-----------------~vg~- 448 (525)
+.+|||| ++.+|++ .+..++|||+++.+++.|.+++++.|+..- |+ +...
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPdP 203 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPVP 203 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCCC
Confidence 5899999 7777876 478999999999999999999998887542 22 1111
Q ss_pred ----c----cHHHHHHHHHhccCCCcEEEEEEe
Q 043102 449 ----E----YMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 449 ----~----~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
+ -.+.+++++.|+|||||.+.+.+-
T Consensus 204 W~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 204 WDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred ccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 1 126899999999999999999764
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00044 Score=70.15 Aligned_cols=77 Identities=18% Similarity=0.356 Sum_probs=56.3
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc-----------------cc--
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN------DR-----------------SF-- 446 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~-----------------~v-- 446 (525)
.+||||| +..+++.. +++|++||+++++++.|++.....+..++ |+ ..
T Consensus 68 ~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~ 147 (262)
T PRK04457 68 QHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGFDG 147 (262)
T ss_pred CEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCCCC
Confidence 3899999 55666653 78999999999999999998754332222 22 00
Q ss_pred -Cc---ccHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 447 -GH---EYMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 447 -g~---~~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
+. -...+|++++.++|+|||++++..+..
T Consensus 148 ~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 148 EGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred CCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 11 123799999999999999999976543
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00079 Score=67.80 Aligned_cols=83 Identities=14% Similarity=0.075 Sum_probs=67.3
Q ss_pred ccccCCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc-cc
Q 043102 393 CALFKVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR-SF 446 (525)
Q Consensus 393 ~a~f~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~-~v 446 (525)
+++.+..+|||.| +.++|..- -.+|++.++-++.++.|++++++.|+.++ |+ -+
T Consensus 90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~L 169 (256)
T COG2519 90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFL 169 (256)
T ss_pred cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEE
Confidence 3556667999999 56667432 37999999999999999999999999885 22 33
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
..++--++++.++++|||||.+++-.-+.
T Consensus 170 Dmp~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 170 DLPDPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred cCCChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 56777899999999999999999876544
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00034 Score=67.28 Aligned_cols=77 Identities=21% Similarity=0.380 Sum_probs=60.7
Q ss_pred eehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------------Cc----cc
Q 043102 400 EVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN----------------------DR----SF 446 (525)
Q Consensus 400 rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------------D~----~v 446 (525)
+|||+| ...|+++ ...+.+|||-|++-++.|+..++..|+++. |+ ++
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAi 149 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAI 149 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeee
Confidence 999999 6678875 234699999999999999999999888763 22 22
Q ss_pred C------cccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 447 G------HEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 447 g------~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
+ ...+..|+..+.++|+|||+|+|.+-..+
T Consensus 150 sLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 150 SLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT 185 (227)
T ss_pred ecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc
Confidence 1 22347899999999999999999776544
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0005 Score=67.23 Aligned_cols=77 Identities=10% Similarity=0.131 Sum_probs=56.1
Q ss_pred CCeehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCC---------CCC--Cc--------ccCcccH
Q 043102 398 VREVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADL---------ERN--DR--------SFGHEYM 451 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl---------~d~--D~--------~vg~~~~ 451 (525)
..+||||| +..+++. .+++|+|||+|+++++.|+++.....+ .+. |. |+..+++
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p~~~ 123 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINPDNL 123 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCHHHH
Confidence 34899999 5566665 378999999999999999987543211 111 33 5666678
Q ss_pred HHHHHHHHhccCCCcEEEEEEecCC
Q 043102 452 EEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
..+++++.+++ ++.+++-++..+
T Consensus 124 ~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 124 PTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred HHHHHHHHhhc--CcEEEEEEeeCC
Confidence 99999999998 567777666443
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR02732 zeta_caro_desat carotene 7,8-desaturase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.001 Score=72.88 Aligned_cols=53 Identities=6% Similarity=-0.101 Sum_probs=36.6
Q ss_pred EEEecCCCCC--HHHHHHHHHhhhh-cCCCCeEEeccCCCCC---CchhhhchHHHHHhhhc
Q 043102 212 KWSTGPPVPF--VAASKASLELGHI-QGRRGIWFRGAYQGYG---FHEDGLKDLSINSCMTY 267 (525)
Q Consensus 212 ~~~y~HPv~~--~~a~~aq~~l~~i-qG~~~~~fcGay~g~G---fHEdg~~Sgl~aA~~ll 267 (525)
..++.+++|. +.. +..+... ....|+|.||+|+..| --|.+++||..||+.+|
T Consensus 416 v~~~~~a~~~~~pg~---~~~~P~~~t~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 416 VVKLAQSLYREAPGM---DPFRPDQKTPISNFFLAGSYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred EEEecCceeccCCCC---cccCCCCCCCCCCeEEeccccccCchHHHhHHHHHHHHHHHHhC
Confidence 4566777765 321 1122322 2347999999999775 48999999999999763
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00048 Score=68.20 Aligned_cols=107 Identities=15% Similarity=0.156 Sum_probs=69.3
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH-c------CCC------------CC-----------
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE-A------DLE------------RN----------- 442 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~-~------gl~------------d~----------- 442 (525)
.+||..| +..||++ |.+|+|||+|+.-++.|.+.... . +.. |-
T Consensus 39 ~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~f 117 (218)
T PF05724_consen 39 GRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKF 117 (218)
T ss_dssp EEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSE
T ss_pred CeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCc
Confidence 3899999 8899986 99999999999999888543221 0 000 00
Q ss_pred ----Cc----ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcC
Q 043102 443 ----DR----SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAAS 514 (525)
Q Consensus 443 ----D~----~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~ 514 (525)
|+ ++..+.+++|.+.+.++|||||++++-++..+..... -|- +--+.+++.+.+..
T Consensus 118 D~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~-------------GPP-f~v~~~ev~~l~~~-- 181 (218)
T PF05724_consen 118 DLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEME-------------GPP-FSVTEEEVRELFGP-- 181 (218)
T ss_dssp EEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSS-------------SSS-----HHHHHHHHTT--
T ss_pred eEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCC-------------CcC-CCCCHHHHHHHhcC--
Confidence 22 5667889999999999999999977666644322110 111 11356777777763
Q ss_pred CcEEEEEE
Q 043102 515 RLWYNLAV 522 (525)
Q Consensus 515 gl~V~~~~ 522 (525)
+|+|....
T Consensus 182 ~f~i~~l~ 189 (218)
T PF05724_consen 182 GFEIEELE 189 (218)
T ss_dssp TEEEEEEE
T ss_pred CcEEEEEe
Confidence 68877653
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0014 Score=70.85 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=60.9
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC-------------------------Cc-
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN-------------------------DR- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-------------------------D~- 444 (525)
+.+|||+| +..+++.. +++|+++|+|+++++.++++++..|+... |+
T Consensus 239 g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaP 318 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAP 318 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcCC
Confidence 34999999 67777754 48999999999999999999998776321 22
Q ss_pred --ccCc----c----------------cHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 445 --SFGH----E----------------YMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 445 --~vg~----~----------------~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
..|. + ...+.++.+.++|||||+++..+.+..
T Consensus 319 cSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 319 CSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred CCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 1121 1 135789999999999999999887774
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0002 Score=72.55 Aligned_cols=73 Identities=14% Similarity=0.210 Sum_probs=49.1
Q ss_pred Ceehhhc------HHHHHHhc----CCEEEEEcCChHHHHHHHHHHHHcC--------C--CCC--CcccCcccHHHHHH
Q 043102 399 REVIFLG------TIEVVKRT----GCKYTGITLAEKQLKYAGIKVKEAD--------L--ERN--DRSFGHEYMEEFFG 456 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~----G~~VtGIdlS~eql~~Ar~r~~~~g--------l--~d~--D~~vg~~~~~~~f~ 456 (525)
.+||||| +..+++.. ++.|+|+|+|+++++.|+++..... + .+. |..+. -..+..++
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~-~~~~~~~~ 165 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIR-IYAPCKAE 165 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEE-ecCCCCHH
Confidence 4899999 55666542 3589999999999999988753211 1 111 33111 11134578
Q ss_pred HHHhccCCCcEEEEEE
Q 043102 457 CCESLIAKDGLFVLQF 472 (525)
Q Consensus 457 ~i~r~LkpGG~~viq~ 472 (525)
++.|+|||||++++-.
T Consensus 166 e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 166 ELARVVKPGGIVITVT 181 (272)
T ss_pred HHHhhccCCCEEEEEe
Confidence 9999999999998753
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0018 Score=62.64 Aligned_cols=81 Identities=17% Similarity=0.176 Sum_probs=66.3
Q ss_pred CCCeehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc-cc-Cccc
Q 043102 397 KVREVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR-SF-GHEY 450 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~-~v-g~~~ 450 (525)
++++++||| ++++|.. ..++|++||-+++.++..++++++.|++.- |+ -+ |-.+
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg~~ 113 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGGGN 113 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCCCC
Confidence 345999999 7777732 479999999999999999999999886532 22 22 3478
Q ss_pred HHHHHHHHHhccCCCcEEEEEEecCCC
Q 043102 451 MEEFFGCCESLIAKDGLFVLQFISIPD 477 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~i~~~~ 477 (525)
.+..++.+...|||||+++++.++...
T Consensus 114 i~~ile~~~~~l~~ggrlV~naitlE~ 140 (187)
T COG2242 114 IEEILEAAWERLKPGGRLVANAITLET 140 (187)
T ss_pred HHHHHHHHHHHcCcCCeEEEEeecHHH
Confidence 999999999999999999999987653
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0012 Score=67.60 Aligned_cols=73 Identities=14% Similarity=0.284 Sum_probs=57.3
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Ccc---------
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DRS--------- 445 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~~--------- 445 (525)
.+|||+| ++.+++.. +++|+|+|+|+++++.|+++++..++.++ |..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 3899999 67777753 58999999999999999999988776532 110
Q ss_pred ------------------c----CcccHHHHHHHHHhccCCCcEEEEE
Q 043102 446 ------------------F----GHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 446 ------------------v----g~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
. |...+..+++.+.++|+|||.+++.
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 0 1235778899999999999999874
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0015 Score=68.27 Aligned_cols=75 Identities=20% Similarity=0.189 Sum_probs=58.0
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Ccc-----cC--
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DRS-----FG-- 447 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~~-----vg-- 447 (525)
+.+|||+| +++++. .|++|+|+|+|++|++.|+++++..|+++- |.. .|
T Consensus 183 g~~vLDp~cGtG~~lieaa~-~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~ 261 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGL-MGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRS 261 (329)
T ss_pred cCEEEECCCCCCHHHHHHHH-hCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCc
Confidence 34899988 556665 599999999999999999999988887541 220 01
Q ss_pred -----c---ccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 448 -----H---EYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 448 -----~---~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
. ..+..+++++.++|||||++++-..
T Consensus 262 ~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 262 TTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred ccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 1 2268899999999999999987543
|
This family is found exclusively in the Archaea. |
| >PLN02612 phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0092 Score=67.00 Aligned_cols=79 Identities=15% Similarity=0.115 Sum_probs=47.6
Q ss_pred HHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCceEeCCEEEEecChHHHHHhhcCCC-CHHHHhh---cc
Q 043102 79 ESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGSREFYNSCVMALHAPDALKILGNQA-TFDETRT---GG 154 (525)
Q Consensus 79 ~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~~e~fD~VV~A~hadqAL~lL~~~~-t~~E~~i---Lg 154 (525)
+.+|++++++..+.+|..+. +|. .+.|++.+|+...+|+||+|++++.+.+||.+.. .....+- |.
T Consensus 319 ~~~G~~I~l~~~V~~I~~~~---------~g~-v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~l~ 388 (567)
T PLN02612 319 QSLGGEVRLNSRIKKIELND---------DGT-VKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWKEIPYFKKLDKLV 388 (567)
T ss_pred HhcCCEEEeCCeeeEEEECC---------CCc-EEEEEECCCcEEECCEEEECCCHHHHHHhCcchhcCcHHHHHHHhcC
Confidence 34567777776666665422 111 1335556787788999999999988888886421 1122222 33
Q ss_pred CCc--eeEeccCCCC
Q 043102 155 AFH--DIFLHCDKNS 167 (525)
Q Consensus 155 ~f~--~~vlHtD~s~ 167 (525)
... .+.+.-|..+
T Consensus 389 ~~~v~~v~l~~dr~~ 403 (567)
T PLN02612 389 GVPVINVHIWFDRKL 403 (567)
T ss_pred CCCeEEEEEEECccc
Confidence 322 6777777665
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00039 Score=71.91 Aligned_cols=76 Identities=21% Similarity=0.236 Sum_probs=60.0
Q ss_pred Ceehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC-------Cc----------ccCcccHHHH
Q 043102 399 REVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN-------DR----------SFGHEYMEEF 454 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~-------D~----------~vg~~~~~~~ 454 (525)
.+|||+| ++.+++ .|+ +|+|+|+++.-++.|+++++..|++++ |. .+-..-+...
T Consensus 163 ~~vLDvG~GSGILaiaA~k-lGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~~~~dlvvANI~~~vL~~l 241 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAK-LGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVEGKFDLVVANILADVLLEL 241 (295)
T ss_dssp SEEEEES-TTSHHHHHHHH-TTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCCS-EEEEEEES-HHHHHHH
T ss_pred CEEEEeCCcHHHHHHHHHH-cCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecccccccCCEEEECCCHHHHHHH
Confidence 3999999 666665 587 899999999999999999999888776 21 1223346678
Q ss_pred HHHHHhccCCCcEEEEEEecC
Q 043102 455 FGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 455 f~~i~r~LkpGG~~viq~i~~ 475 (525)
+..+.++|||||++++.-|..
T Consensus 242 ~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 242 APDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp HHHCHHHEEEEEEEEEEEEEG
T ss_pred HHHHHHhhCCCCEEEEccccH
Confidence 888999999999999977753
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0015 Score=67.06 Aligned_cols=75 Identities=25% Similarity=0.449 Sum_probs=54.8
Q ss_pred Ceehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHHHHHc--CC-CCC-------Cc-----------------
Q 043102 399 REVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIKVKEA--DL-ERN-------DR----------------- 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r~~~~--gl-~d~-------D~----------------- 444 (525)
.+||+|| +.+++++.+ .+|++||+++++++.|++.+... +. ++. |+
T Consensus 78 ~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D 157 (283)
T PRK00811 78 KRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVD 157 (283)
T ss_pred CEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEEC
Confidence 4999999 566776544 59999999999999999987643 22 121 22
Q ss_pred ---ccCcc---cHHHHHHHHHhccCCCcEEEEEEe
Q 043102 445 ---SFGHE---YMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 445 ---~vg~~---~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
..+.. .-.+|++.|.+.|||||++++|.-
T Consensus 158 ~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 158 STDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred CCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 11111 237899999999999999998743
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0017 Score=64.53 Aligned_cols=80 Identities=15% Similarity=0.235 Sum_probs=65.6
Q ss_pred CCeehhhc------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------C-------c-
Q 043102 398 VREVIFLG------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------D-------R- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D-------~- 444 (525)
..++|||| ++..|.. .+.+|+++|+.++-++.+.+..+.+|+.++ | -
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 34999999 5555543 489999999999999999999999999876 1 1
Q ss_pred cc--CcccHHHHHHHHHhccCCCcEEEEEEecCCC
Q 043102 445 SF--GHEYMEEFFGCCESLIAKDGLFVLQFISIPD 477 (525)
Q Consensus 445 ~v--g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~ 477 (525)
-+ .+.+|-.|+.++.++||+||+++++.+..+.
T Consensus 154 FvDadK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 154 FVDADKDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred EEccchHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 11 2567889999999999999999999876665
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0013 Score=72.73 Aligned_cols=73 Identities=11% Similarity=0.201 Sum_probs=56.8
Q ss_pred Ceehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc----------
Q 043102 399 REVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR---------- 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~---------- 444 (525)
.+||||| ++.++++ .+++|+|+|+|+++++.|+++++..++.++ |.
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~~ 219 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYISH 219 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCCc
Confidence 4899999 6667765 478999999999999999999987776543 11
Q ss_pred -----------------cc-----CcccHHHHHHHHHhccCCCcEEEEE
Q 043102 445 -----------------SF-----GHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 445 -----------------~v-----g~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
++ |.+.+..+++.+.++|||||.+++.
T Consensus 220 ~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 220 SEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred hhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 00 2245677889999999999999883
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0015 Score=65.22 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=57.9
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHH-------------HcC------------CC----C--
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVK-------------EAD------------LE----R-- 441 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~-------------~~g------------l~----d-- 441 (525)
.+||+.| ++.||++ |.+|+|||+|+.-++.+.+... ..+ +. .
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~ 123 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLP 123 (226)
T ss_pred CeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccC
Confidence 4999999 8899986 9999999999999998866310 001 10 0
Q ss_pred C-----Cc----ccCcccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 442 N-----DR----SFGHEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 442 ~-----D~----~vg~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
. |+ ++..+.+.+|++.+.++|+|||.+++-+..
T Consensus 124 ~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 124 VFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred CcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 1 33 667788999999999999999999887664
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.001 Score=65.28 Aligned_cols=78 Identities=14% Similarity=0.021 Sum_probs=57.9
Q ss_pred eehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCC-----------------CCC--Cccc------Cc
Q 043102 400 EVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADL-----------------ERN--DRSF------GH 448 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl-----------------~d~--D~~v------g~ 448 (525)
.|||+| --+.--..+|+||+||-++.|-++|.+++++..- +|. |..| ..
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSv 158 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSV 158 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEecc
Confidence 689999 2222223589999999999999999999877421 000 3312 36
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCC
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPD 477 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~ 477 (525)
++..+.++++.|+|+|||++++-+-+..+
T Consensus 159 e~~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 159 EDPVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 78889999999999999999987766543
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0015 Score=65.42 Aligned_cols=42 Identities=17% Similarity=0.385 Sum_probs=35.9
Q ss_pred cccCCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHH
Q 043102 394 ALFKVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVK 435 (525)
Q Consensus 394 a~f~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~ 435 (525)
..|....+|||| ++.+|+..|+ .|.|+||++.-++.|++.++
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r 103 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR 103 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc
Confidence 344455899999 7889998887 89999999999999999874
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00042 Score=68.81 Aligned_cols=146 Identities=27% Similarity=0.300 Sum_probs=83.4
Q ss_pred HHhhhcccccchHHHHhccccccchhccccCC-----------Ceehhhc-----HHHHHHhcCCEEEEEcCChHHHHHH
Q 043102 367 CRHISRHYDLSNELFCLFLDESLTYSCALFKV-----------REVIFLG-----TIEVVKRTGCKYTGITLAEKQLKYA 430 (525)
Q Consensus 367 ~~nIa~hYDl~nd~y~l~Ld~~m~ys~a~f~~-----------~rVLDIG-----a~~lA~~~G~~VtGIdlS~eql~~A 430 (525)
..-++.-+|.-.+-|...|-+...|+...+-. .++||+| +-...+..-.+.||||||+.|++.|
T Consensus 84 ~aYVe~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA 163 (287)
T COG4976 84 SAYVETLFDQYAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKA 163 (287)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHH
Confidence 35556666655555655555555565322100 1999999 1111111235899999999999999
Q ss_pred HHHH-------HHcC--CCCC-----Cc----cc--CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHH
Q 043102 431 GIKV-------KEAD--LERN-----DR----SF--GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFM 490 (525)
Q Consensus 431 r~r~-------~~~g--l~d~-----D~----~v--g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi 490 (525)
.+|- .++- +++. |- .| =...++.+|..+..+|+|||.|.+..-+.++.. .+ ...=-
T Consensus 164 ~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~--~f--~l~ps 239 (287)
T COG4976 164 HEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDG--GF--VLGPS 239 (287)
T ss_pred HhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCC--Ce--ecchh
Confidence 9882 1110 1111 22 11 123688999999999999999998765544320 00 00001
Q ss_pred hhcccCCCCCCCHHHHHHHHHhcCCcEEEEEEe
Q 043102 491 KEYIFPGGCLPSLSRITSAMSAASRLWYNLAVS 523 (525)
Q Consensus 491 ~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~~ 523 (525)
++| -.+-+-+.+.++. +||+|+-...
T Consensus 240 ~Ry------AH~~~YVr~~l~~-~Gl~~i~~~~ 265 (287)
T COG4976 240 QRY------AHSESYVRALLAA-SGLEVIAIED 265 (287)
T ss_pred hhh------ccchHHHHHHHHh-cCceEEEeec
Confidence 222 2344445555555 7999886543
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0016 Score=69.91 Aligned_cols=92 Identities=22% Similarity=0.278 Sum_probs=68.5
Q ss_pred Hhcccccc--chhccccCCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC----------
Q 043102 382 CLFLDESL--TYSCALFKVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN---------- 442 (525)
Q Consensus 382 ~l~Ld~~m--~ys~a~f~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~---------- 442 (525)
.+|||.+. .....+.+..+|||+= ++++|.. || +||+||+|..-+++|+++++-.|++..
T Consensus 200 GfFlDqR~~R~~l~~~~~GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf 278 (393)
T COG1092 200 GFFLDQRDNRRALGELAAGKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVF 278 (393)
T ss_pred eeeHHhHHHHHHHhhhccCCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHH
Confidence 34555432 2233444445888875 8888875 99 999999999999999999999998643
Q ss_pred ------------------Cc-cc---------CcccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 443 ------------------DR-SF---------GHEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 443 ------------------D~-~v---------g~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
|+ .+ ..++|......+.++|+|||.+++-+-.
T Consensus 279 ~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 279 KWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred HHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 22 11 1467888899999999999999986543
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0021 Score=70.03 Aligned_cols=79 Identities=18% Similarity=0.154 Sum_probs=60.0
Q ss_pred CCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------------Cc-cc-
Q 043102 398 VREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN---------------------DR-SF- 446 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------------D~-~v- 446 (525)
+.+|||+| +..+++.. +.+|+++|+|+++++.+++++++.|+..- |+ ..
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~Pcsg 330 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAPCTG 330 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCCCCC
Confidence 34999999 66777643 46999999999999999999998887421 22 11
Q ss_pred -Cc-------------c-------cHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 447 -GH-------------E-------YMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 447 -g~-------------~-------~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
|. + .....++.+.++|||||+++..+.+..
T Consensus 331 ~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 331 TGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred cchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 10 1 123689999999999999999887764
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0022 Score=63.29 Aligned_cols=73 Identities=16% Similarity=0.308 Sum_probs=55.6
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------CcccC--------
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN----------------DRSFG-------- 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~~vg-------- 447 (525)
.+|||+| ++.+++.. +++|+|+|+|+++++.|+++++..++..- |..+.
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~~~ 168 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIPEA 168 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCchh
Confidence 3899999 66777653 67999999999999999999988776411 11000
Q ss_pred ------------------------cccHHHHHHHHHhccCCCcEEEEE
Q 043102 448 ------------------------HEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 448 ------------------------~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
...+..+++.+.++|||||.+++.
T Consensus 169 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 169 DIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred hhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 112457889999999999999884
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.011 Score=63.89 Aligned_cols=32 Identities=9% Similarity=0.100 Sum_probs=27.4
Q ss_pred cCCCCeEEeccCCC---CCCchhhhchHHHHHhhh
Q 043102 235 QGRRGIWFRGAYQG---YGFHEDGLKDLSINSCMT 266 (525)
Q Consensus 235 qG~~~~~fcGay~g---~GfHEdg~~Sgl~aA~~l 266 (525)
..-.+++|||+|+. .|+-|.++.||..||+.+
T Consensus 418 ~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v 452 (453)
T TIGR02731 418 TPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAI 452 (453)
T ss_pred CccCCEEEeehhccCcccccHHHHHHHHHHHHHHh
Confidence 34678999999984 468999999999999976
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0028 Score=68.91 Aligned_cols=79 Identities=15% Similarity=0.197 Sum_probs=60.5
Q ss_pred CCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------------Cc--
Q 043102 398 VREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------------DR-- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------------D~-- 444 (525)
+.+|||+| +..+|+.. +.+|+++|+|+++++.+++++++.|+..- |+
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPC 317 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPC 317 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCC
Confidence 34999999 77777754 57999999999999999999998887421 22
Q ss_pred -ccCc--------------------ccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 445 -SFGH--------------------EYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 445 -~vg~--------------------~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
..|. +...+.+..+.++|||||+++..+.+..
T Consensus 318 sg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 318 TSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 1221 0235668899999999999988777654
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0027 Score=68.78 Aligned_cols=78 Identities=14% Similarity=0.198 Sum_probs=58.6
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------------Cc---
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------------DR--- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------------D~--- 444 (525)
+.+|||+| ++.+++.. +.+|+++|+|+++++.++++++..|+... |+
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs 324 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCS 324 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCC
Confidence 45999999 77888764 37999999999999999999988665311 22
Q ss_pred ccCc--------------------ccHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 445 SFGH--------------------EYMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 445 ~vg~--------------------~~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
..|. .....+++.+.++|||||+++.-+.+.
T Consensus 325 ~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 325 ATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred cccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 1110 013478999999999999999877554
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0046 Score=68.80 Aligned_cols=73 Identities=29% Similarity=0.382 Sum_probs=52.5
Q ss_pred eehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHH--HHH---cCCCCC-------Cc----------------
Q 043102 400 EVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIK--VKE---ADLERN-------DR---------------- 444 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r--~~~---~gl~d~-------D~---------------- 444 (525)
+||||| +.+++++.+ .+|+.||+++++++.|+++ ..+ ..+++. |+
T Consensus 300 rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~ 379 (521)
T PRK03612 300 RVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIV 379 (521)
T ss_pred eEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEE
Confidence 999999 567776544 6999999999999999983 322 123221 22
Q ss_pred ----cc----CcccHHHHHHHHHhccCCCcEEEEEE
Q 043102 445 ----SF----GHEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 445 ----~v----g~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.. .+-+-++|++.+.+.|||||++++|.
T Consensus 380 D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 380 DLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred eCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 00 11123579999999999999999986
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0027 Score=66.05 Aligned_cols=75 Identities=12% Similarity=0.238 Sum_probs=56.4
Q ss_pred Ceehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHHHHHc--CCCCC-------Cc------------------
Q 043102 399 REVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIKVKEA--DLERN-------DR------------------ 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r~~~~--gl~d~-------D~------------------ 444 (525)
.+||+|| +.+++++.+ .+|+.|||++++++.|++..... ++++. |+
T Consensus 93 krVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D 172 (308)
T PLN02366 93 KKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVD 172 (308)
T ss_pred CeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEc
Confidence 4999999 667777644 58999999999999999987643 33332 22
Q ss_pred ---ccCcc---cHHHHHHHHHhccCCCcEEEEEEe
Q 043102 445 ---SFGHE---YMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 445 ---~vg~~---~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
..+.. ..++|++.+.++|+|||++++|.-
T Consensus 173 ~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 173 SSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred CCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 11111 246899999999999999999864
|
|
| >PLN02529 lysine-specific histone demethylase 1 | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.023 Score=65.76 Aligned_cols=59 Identities=5% Similarity=-0.072 Sum_probs=39.8
Q ss_pred ccEEEEeCCCceEeCCEEEEecChHHHHHh-hcCCC--CHHHHhhccCCc-----eeEeccCCCCCCC
Q 043102 111 SSCTVVCGDGSREFYNSCVMALHAPDALKI-LGNQA--TFDETRTGGAFH-----DIFLHCDKNSMPQ 170 (525)
Q Consensus 111 ~gv~v~~~~g~~e~fD~VV~A~hadqAL~l-L~~~~--t~~E~~iLg~f~-----~~vlHtD~s~mP~ 170 (525)
.||.|.+. +....+|+||+|+|.....+. +.-.| .+.-++.+..+. .++++-|..+.+.
T Consensus 383 dGVtV~t~-~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW~~ 449 (738)
T PLN02529 383 DGVEVIAG-SQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFWGE 449 (738)
T ss_pred CeEEEEEC-CEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccccC
Confidence 36888764 446789999999999987743 22123 233345566665 8888888776654
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.003 Score=65.33 Aligned_cols=74 Identities=22% Similarity=0.274 Sum_probs=58.3
Q ss_pred eehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCC--C---------------Cc---ccCcccHH
Q 043102 400 EVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLER--N---------------DR---SFGHEYME 452 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d--~---------------D~---~vg~~~~~ 452 (525)
+|||+| |+.+++ .|+ +|.|+|+++--++.|+++++..++.. + |. .+-.+=..
T Consensus 165 ~vlDvGcGSGILaIAa~k-LGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA~vl~ 243 (300)
T COG2264 165 TVLDVGCGSGILAIAAAK-LGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILAEVLV 243 (300)
T ss_pred EEEEecCChhHHHHHHHH-cCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhHHHHH
Confidence 999999 666565 698 59999999999999999999888873 2 11 11123355
Q ss_pred HHHHHHHhccCCCcEEEEEEec
Q 043102 453 EFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq~i~ 474 (525)
.....+.++|||||++++.-|.
T Consensus 244 ~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 244 ELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred HHHHHHHHHcCCCceEEEEeeh
Confidence 7888999999999999997664
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0022 Score=73.74 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=58.5
Q ss_pred CCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCC-CC------C------------------c-
Q 043102 398 VREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLE-RN------D------------------R- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~-d~------D------------------~- 444 (525)
+.+|||+| ++.+|+. |+ +|++||+|++.++.|+++++..|++ ++ | +
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 34999999 7888875 76 6999999999999999999988886 22 2 1
Q ss_pred ccC-----------cccHHHHHHHHHhccCCCcEEEEEE
Q 043102 445 SFG-----------HEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 445 ~vg-----------~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.+. .+++..+++.+.++|+|||.+++.+
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 111 2356788999999999999998754
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0012 Score=70.26 Aligned_cols=128 Identities=14% Similarity=0.122 Sum_probs=90.0
Q ss_pred HHHHhhhcccccchHHHHhccccccchhccccCC-----------------------Ceehhhc------HHHHHHhcCC
Q 043102 365 QACRHISRHYDLSNELFCLFLDESLTYSCALFKV-----------------------REVIFLG------TIEVVKRTGC 415 (525)
Q Consensus 365 ~s~~nIa~hYDl~nd~y~l~Ld~~m~ys~a~f~~-----------------------~rVLDIG------a~~lA~~~G~ 415 (525)
.....++..|+...++|..-++..+..+ .+++. .++||+| +.+++...+|
T Consensus 56 ~~~e~~~~~y~~~~dl~~~~w~~~~h~~-~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~ 134 (364)
T KOG1269|consen 56 DLPEQIAKYYNNSTDLYERNWGQSFHFG-RIPEGNSNEMFWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVFKKA 134 (364)
T ss_pred ccchHHHHHhcccchhhhhhhccchhcc-CccchhHHHHHHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHhccC
Confidence 5567778888888888876666544321 11211 1788998 7777776689
Q ss_pred EEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc------ccCcccHHHHHHHHHhccCCCcEEEEE
Q 043102 416 KYTGITLAEKQLKYAGIKVKEADLERN------------------DR------SFGHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 416 ~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~------~vg~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
.++|+|+++.|+..+......+++.++ |. -.+..+....+++++|+|||||+++.-
T Consensus 135 ~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 135 GVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred CccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 999999999999999999888777655 22 224567889999999999999999998
Q ss_pred EecCCCcchhcccCchhHHhhcc
Q 043102 472 FISIPDERYNEFRLSSDFMKEYI 494 (525)
Q Consensus 472 ~i~~~~~~~~~~~~~~~fi~kYI 494 (525)
.+..... +........++.--|
T Consensus 215 e~i~~~~-~~~~~~~~~~i~~~i 236 (364)
T KOG1269|consen 215 EWIKTAK-LKKPNSEHVDILLEI 236 (364)
T ss_pred HHHHhhh-ccCCCcccccccCce
Confidence 7766532 222223344544334
|
|
| >PLN02487 zeta-carotene desaturase | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0045 Score=69.56 Aligned_cols=34 Identities=9% Similarity=0.058 Sum_probs=28.3
Q ss_pred CCCeEEeccCCCCC---CchhhhchHHHHHhhhcCCc
Q 043102 237 RRGIWFRGAYQGYG---FHEDGLKDLSINSCMTYGEE 270 (525)
Q Consensus 237 ~~~~~fcGay~g~G---fHEdg~~Sgl~aA~~llG~~ 270 (525)
-.|+|.||+|+..| --|.+++||..||+.++...
T Consensus 517 ~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~ 553 (569)
T PLN02487 517 ISNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAG 553 (569)
T ss_pred CCCEEEeCcccccCCcchHHHHHHHHHHHHHHHHHHh
Confidence 37999999998655 48999999999999885443
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0025 Score=68.50 Aligned_cols=76 Identities=14% Similarity=0.226 Sum_probs=57.5
Q ss_pred CCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCC-CC------Cc------------------
Q 043102 397 KVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLE-RN------DR------------------ 444 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~-d~------D~------------------ 444 (525)
+..+|||+| ++.++.. |+ +|++||+|+..++.|+++++..|++ ++ |.
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 445999999 5655553 55 9999999999999999999988875 22 22
Q ss_pred ----cc--C-------cccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 445 ----SF--G-------HEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 445 ----~v--g-------~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
.. . .+.|..+++.+.++|||||.+++-+-
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 00 0 13577788889999999999987553
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0031 Score=66.04 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=53.8
Q ss_pred CCCeehhhc------HHHHHHhcC--CEEEEEcCChHHHHHHHHHHHHcCCCCC-----Cc---------------ccCc
Q 043102 397 KVREVIFLG------TIEVVKRTG--CKYTGITLAEKQLKYAGIKVKEADLERN-----DR---------------SFGH 448 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G--~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D~---------------~vg~ 448 (525)
++.+||||| +..+|+..+ .+|+|||+|+++++.|++++++.|++.- |. ..+.
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~ 159 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGV 159 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCch
Confidence 345999999 667777654 4799999999999999999988776421 22 1122
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
. .....+.+.|||||++++..
T Consensus 160 ~---~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 160 D---EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred H---HhHHHHHHhcCCCCEEEEEe
Confidence 2 33456778999999998854
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0031 Score=66.99 Aligned_cols=74 Identities=24% Similarity=0.299 Sum_probs=51.6
Q ss_pred eehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHH--H---HHcCCCCC-------Cc----------------
Q 043102 400 EVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIK--V---KEADLERN-------DR---------------- 444 (525)
Q Consensus 400 rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r--~---~~~gl~d~-------D~---------------- 444 (525)
+||+|| +.++.+.. ..+|+.||+++++++.|++. + .+..+.+. |+
T Consensus 153 rVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIv 232 (374)
T PRK01581 153 RVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIII 232 (374)
T ss_pred EEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEE
Confidence 999999 45566543 36999999999999999962 1 11223222 22
Q ss_pred c----cC----cccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 445 S----FG----HEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 445 ~----vg----~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
. .+ .-+-.+||+.|.+.|+|||++++|.-
T Consensus 233 Dl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 233 DFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred cCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 1 11 11236799999999999999999853
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0041 Score=67.65 Aligned_cols=78 Identities=21% Similarity=0.236 Sum_probs=59.0
Q ss_pred CCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------------Cc--
Q 043102 398 VREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------------DR-- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------------D~-- 444 (525)
..+|||+| ++.+++.. +++|+++|+|+++++.++++++..|+.+- |+
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 330 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAPC 330 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCCC
Confidence 34899999 77778764 57999999999999999999988876421 21
Q ss_pred -ccCc-------------c-------cHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 445 -SFGH-------------E-------YMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 445 -~vg~-------------~-------~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
..|. . ...++++.+.++|||||+++..+.+.
T Consensus 331 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 331 SGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 1110 0 12467999999999999999876655
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0055 Score=62.15 Aligned_cols=79 Identities=11% Similarity=0.135 Sum_probs=58.9
Q ss_pred CCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------------Cc-cc
Q 043102 398 VREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN----------------------DR-SF 446 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------------D~-~v 446 (525)
..+|||+| +..+|+.. ...|+++|+|+++++.++++++..|+..- |+ ..
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcs 151 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCS 151 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCC
Confidence 45999999 66677653 36999999999999999999998886431 22 11
Q ss_pred Cc----------------------ccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 447 GH----------------------EYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 447 g~----------------------~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
|. ....+.++.+.++|||||+++..+-+..
T Consensus 152 g~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 152 GEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred CCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 10 1234589999999999999988766553
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0035 Score=62.97 Aligned_cols=72 Identities=18% Similarity=0.326 Sum_probs=53.8
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Ccc------c--
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DRS------F-- 446 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~~------v-- 446 (525)
.+|||+| ++.+++.. .++|+|+|+|+++++.|+++++. +...+ |.. +
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~-~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~~~ 188 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH-GLGARVEFLQGDWFEPLPGGRFDLIVSNPPYIPE 188 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh-CCCCcEEEEEccccCcCCCCceeEEEECCCcCCc
Confidence 4899999 67777664 58999999999999999999871 11111 110 0
Q ss_pred ------------------------CcccHHHHHHHHHhccCCCcEEEEE
Q 043102 447 ------------------------GHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 447 ------------------------g~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
|.+.+..+++.+.++|||||++++.
T Consensus 189 ~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 189 ADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred chhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 1234678899999999999999984
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0056 Score=49.67 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=51.0
Q ss_pred eehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc----cc--C-c
Q 043102 400 EVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR----SF--G-H 448 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~----~v--g-~ 448 (525)
+||||| +..+++..+.+++++|+|+++++.+++..+..+.... |. .+ . .
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 578998 5566654578999999999999999854332221100 22 11 1 3
Q ss_pred ccHHHHHHHHHhccCCCcEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq 471 (525)
.....+++.+.+.|||||.+++.
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 45689999999999999999886
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PLN02328 lysine-specific histone demethylase 1 homolog | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.03 Score=65.27 Aligned_cols=59 Identities=10% Similarity=-0.044 Sum_probs=40.3
Q ss_pred ccEEEEeCCCceEeCCEEEEecChHHHHH--h-hcCCCCHHHHhhccCCc-----eeEeccCCCCCCC
Q 043102 111 SSCTVVCGDGSREFYNSCVMALHAPDALK--I-LGNQATFDETRTGGAFH-----DIFLHCDKNSMPQ 170 (525)
Q Consensus 111 ~gv~v~~~~g~~e~fD~VV~A~hadqAL~--l-L~~~~t~~E~~iLg~f~-----~~vlHtD~s~mP~ 170 (525)
.||.|. .+|+...+|+||++++.....+ + +....+..-++.+..+. .++++-+..+.+.
T Consensus 463 dgV~V~-~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~ 529 (808)
T PLN02328 463 DGVIVY-AGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWGG 529 (808)
T ss_pred CeEEEE-eCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccC
Confidence 367774 5677789999999999998663 1 22222344456677766 8888887776653
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.016 Score=59.85 Aligned_cols=73 Identities=12% Similarity=0.178 Sum_probs=47.2
Q ss_pred CCeehhhc------HHHHHHhcC--CEEEEEcCChHHHHHHHHHHHH-cCCC----C------------C-Cc---ccC-
Q 043102 398 VREVIFLG------TIEVVKRTG--CKYTGITLAEKQLKYAGIKVKE-ADLE----R------------N-DR---SFG- 447 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G--~~VtGIdlS~eql~~Ar~r~~~-~gl~----d------------~-D~---~vg- 447 (525)
..+|||+| +..+|+..| .+|++||+|+++.+...+.+++ .++. | . |. .+.
T Consensus 133 G~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva~ 212 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVAQ 212 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCCC
Confidence 34999999 778887653 5899999998754333333221 1210 0 0 33 122
Q ss_pred cccHHHHHHHHHhccCCCcEEEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVL 470 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~vi 470 (525)
..+...+..++.+.|||||.++|
T Consensus 213 pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 213 PDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred cchHHHHHHHHHHhccCCCEEEE
Confidence 23344667789999999999999
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0046 Score=66.84 Aligned_cols=40 Identities=15% Similarity=0.124 Sum_probs=34.0
Q ss_pred Ceehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcC
Q 043102 399 REVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEAD 438 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~g 438 (525)
.+||||| ++.++++ .+++|+|+|+|+++++.|+++++..+
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g 299 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG 299 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 3899999 6666764 47899999999999999999987655
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0039 Score=64.25 Aligned_cols=78 Identities=18% Similarity=0.296 Sum_probs=57.0
Q ss_pred ccCCCeehhh----c--HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC-------------------------
Q 043102 395 LFKVREVIFL----G--TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN------------------------- 442 (525)
Q Consensus 395 ~f~~~rVLDI----G--a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------------- 442 (525)
+.++.+|||+ | ++.++. -|+ +|++||+|+..++.|+++++..|++..
T Consensus 121 ~~~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~I 199 (286)
T PF10672_consen 121 YAKGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLI 199 (286)
T ss_dssp HCTTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEE
T ss_pred HcCCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEE
Confidence 3344599994 4 777776 477 899999999999999999998888633
Q ss_pred --Cc-cc--C----cccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 443 --DR-SF--G----HEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 443 --D~-~v--g----~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
|+ .. + .++|.+.++.+.++|+|||.+++-+-
T Consensus 200 IlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 200 ILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp EE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 22 11 1 35788899999999999999876443
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0097 Score=57.14 Aligned_cols=117 Identities=13% Similarity=0.108 Sum_probs=68.6
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHH-H------HcCC---CCC--Cc----c-c-CcccHHHH
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKV-K------EADL---ERN--DR----S-F-GHEYMEEF 454 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~-~------~~gl---~d~--D~----~-v-g~~~~~~~ 454 (525)
.+||||| +..+++..++.++|||+|+++++.|+++- + ...+ .+. |. + + ...+...+
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~~~ 94 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNPEEI 94 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCHHHH
Confidence 4899999 55666666889999999999999987641 0 0111 111 44 1 1 13467788
Q ss_pred HHHHHhccCCCcEEEEEEecCCCcchhc-----cc-CchhHHhhc--cc---CCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 455 FGCCESLIAKDGLFVLQFISIPDERYNE-----FR-LSSDFMKEY--IF---PGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 455 f~~i~r~LkpGG~~viq~i~~~~~~~~~-----~~-~~~~fi~kY--IF---PGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
++++.|.+++ .++.. +...+.. +. ...++.+.+ .+ |...+++.+++.+.++++ ||++....
T Consensus 95 l~e~~r~~~~---~ii~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~-Gf~v~~~~ 166 (194)
T TIGR02081 95 LDEMLRVGRH---AIVSF---PNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGEL-NLRILDRA 166 (194)
T ss_pred HHHHHHhCCe---EEEEc---CChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHC-CCEEEEEE
Confidence 8888887664 33322 1111110 00 001111111 11 234578999999999995 99997644
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0071 Score=62.10 Aligned_cols=73 Identities=19% Similarity=0.359 Sum_probs=57.5
Q ss_pred eehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc-------------
Q 043102 400 EVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR------------- 444 (525)
Q Consensus 400 rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~------------- 444 (525)
+||||| |+.+|++. .++|+|+|+|++-++.|+++++..|+... |-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 699999 77777763 36999999999999999999999886221 11
Q ss_pred --------------cc----CcccHHHHHHHHHhccCCCcEEEEEE
Q 043102 445 --------------SF----GHEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 445 --------------~v----g~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.+ |.+-+..++..+.+.|+|||.+++..
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 11 34567888999999999999998853
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0081 Score=60.59 Aligned_cols=72 Identities=11% Similarity=0.164 Sum_probs=53.1
Q ss_pred eehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCC---------------CC------Cc-cc----
Q 043102 400 EVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLE---------------RN------DR-SF---- 446 (525)
Q Consensus 400 rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~---------------d~------D~-~v---- 446 (525)
+|||+| ++.++++. +.+|+|+|+|+++++.|+++++..+.. .+ |+ .+
T Consensus 89 ~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~ 168 (251)
T TIGR03704 89 VVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPTDA 168 (251)
T ss_pred EEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCchh
Confidence 899999 66777653 679999999999999999998765421 01 11 01
Q ss_pred ----------------------CcccHHHHHHHHHhccCCCcEEEEE
Q 043102 447 ----------------------GHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 447 ----------------------g~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
|.+-+..+++.+.++|||||++++-
T Consensus 169 ~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 169 IALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred hhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1122567888899999999999874
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PLN02976 amine oxidase | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.054 Score=66.27 Aligned_cols=60 Identities=7% Similarity=-0.035 Sum_probs=38.0
Q ss_pred ccEEEEeCCCceEeCCEEEEecChHHHHH-hhcCCC--CHHHHhhccCCc-----eeEeccCCCCCCC
Q 043102 111 SSCTVVCGDGSREFYNSCVMALHAPDALK-ILGNQA--TFDETRTGGAFH-----DIFLHCDKNSMPQ 170 (525)
Q Consensus 111 ~gv~v~~~~g~~e~fD~VV~A~hadqAL~-lL~~~~--t~~E~~iLg~f~-----~~vlHtD~s~mP~ 170 (525)
.||.|.+.+|.+..+|+||+++|.....+ -+.-+| ...-++.+..+. .++|+-+..+.|.
T Consensus 972 dGVtVtTsDGetftADaVIVTVPLGVLKag~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~ 1039 (1713)
T PLN02976 972 KKVKVSTSNGSEFLGDAVLITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDD 1039 (1713)
T ss_pred CcEEEEECCCCEEEeceEEEeCCHHHhhhcccccCCcccHHHHHHHHhhccccceEEEEEeCCccccC
Confidence 37999999998889999999999774431 112122 112223233332 8888877776665
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0057 Score=61.13 Aligned_cols=101 Identities=19% Similarity=0.307 Sum_probs=69.6
Q ss_pred Ceehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCC-------------------CCC--Cc------
Q 043102 399 REVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADL-------------------ERN--DR------ 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl-------------------~d~--D~------ 444 (525)
.+|||.. |++++++ |+ +|..|.-++.-++.|.-+==..+| .|. |+
T Consensus 136 ~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPP 214 (287)
T COG2521 136 ERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPP 214 (287)
T ss_pred CEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeCCC
Confidence 4999976 8988886 98 999999999888877654211111 111 33
Q ss_pred ---ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEE
Q 043102 445 ---SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYN 519 (525)
Q Consensus 445 ---~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~ 519 (525)
+.|.=+-.+|.++++|+|||||++ +|-+..|.++|. |-. -+..+.+.++++ ||+++
T Consensus 215 RfS~AgeLYseefY~El~RiLkrgGrl-FHYvG~Pg~ryr---------------G~d--~~~gVa~RLr~v-GF~~v 273 (287)
T COG2521 215 RFSLAGELYSEEFYRELYRILKRGGRL-FHYVGNPGKRYR---------------GLD--LPKGVAERLRRV-GFEVV 273 (287)
T ss_pred ccchhhhHhHHHHHHHHHHHcCcCCcE-EEEeCCCCcccc---------------cCC--hhHHHHHHHHhc-Cceee
Confidence 334446679999999999999999 567777766543 112 234667778885 88854
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0069 Score=58.91 Aligned_cols=73 Identities=21% Similarity=0.305 Sum_probs=56.7
Q ss_pred eehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----Cc----------------cc--C--
Q 043102 400 EVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN-----DR----------------SF--G-- 447 (525)
Q Consensus 400 rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D~----------------~v--g-- 447 (525)
-+|||| .+.+|++ .+..+.|||++..-+..|.+++.+.++..- |+ ++ .
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 689999 6667765 689999999999999999999999888543 22 11 0
Q ss_pred ---cc------cHHHHHHHHHhccCCCcEEEEEE
Q 043102 448 ---HE------YMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 448 ---~~------~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.+ --+.|++.+.++|||||.+.+.+
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 11 24689999999999999998875
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.012 Score=59.93 Aligned_cols=74 Identities=26% Similarity=0.368 Sum_probs=53.4
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcC--CCCC--------------------Cc-----
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEAD--LERN--------------------DR----- 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~g--l~d~--------------------D~----- 444 (525)
.+||||| +.+++++. ..+|+++|+++++++.|++.+...+ +++. |.
T Consensus 74 ~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~ 153 (270)
T TIGR00417 74 KHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDS 153 (270)
T ss_pred CEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeC
Confidence 3999999 55666654 3689999999999999999875432 1111 22
Q ss_pred --ccCc-cc--HHHHHHHHHhccCCCcEEEEEE
Q 043102 445 --SFGH-EY--MEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 445 --~vg~-~~--~~~~f~~i~r~LkpGG~~viq~ 472 (525)
..+. .+ ..+|++.+.++|+|||+++++.
T Consensus 154 ~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 154 TDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred CCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 1121 11 5789999999999999999973
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.015 Score=63.21 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=58.7
Q ss_pred CCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------------Cc----
Q 043102 398 VREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN---------------------DR---- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------------D~---- 444 (525)
+.+|||+| +..+|+.. .++|+++|+|+++++.++++++..|+..- |.
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~D 332 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLD 332 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEe
Confidence 34999999 77777753 36999999999999999999988876421 22
Q ss_pred ----ccCc----c---------c-------HHHHHHHHHhccCCCcEEEEEEecC
Q 043102 445 ----SFGH----E---------Y-------MEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 445 ----~vg~----~---------~-------~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
..|. + + ..+.++.+.++|||||+++..+.+.
T Consensus 333 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 333 APCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred CCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 0110 0 1 3577999999999999998876555
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0081 Score=59.15 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=62.6
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc-cc--CcccHH
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR-SF--GHEYME 452 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~-~v--g~~~~~ 452 (525)
.+||||| |.-+|+- ..+|++|+..++..+.|+++++..|+.+- |+ .| +....+
T Consensus 74 ~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP 152 (209)
T COG2518 74 DRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVP 152 (209)
T ss_pred CeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeeccCCCC
Confidence 4999999 4456664 55999999999999999999999998543 44 22 122222
Q ss_pred HHHHHHHhccCCCcEEEEEEecCCCcchhcccC--chhHHhhcccCCCCCC
Q 043102 453 EFFGCCESLIAKDGLFVLQFISIPDERYNEFRL--SSDFMKEYIFPGGCLP 501 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~--~~~fi~kYIFPGg~LP 501 (525)
+.+.+.|||||++++=.-..+.+..-.+.+ ...|.++-.|+--..|
T Consensus 153 ---~~Ll~QL~~gGrlv~PvG~~~~q~l~~~~k~~~~~~~~~~l~~v~~vP 200 (209)
T COG2518 153 ---EALLDQLKPGGRLVIPVGSGPAQRLLRITKDGDGNFERRDLFNVRFVP 200 (209)
T ss_pred ---HHHHHhcccCCEEEEEEccCCcEEEEEEEEcCCCcEEEeeeccceeee
Confidence 345688999999998433222222211212 2235555555544444
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.016 Score=56.76 Aligned_cols=73 Identities=19% Similarity=0.238 Sum_probs=45.3
Q ss_pred CCeehhhc------HHHHHHhc--CCEEEEEcCChH-----------------HHHHHHHHHHHcCCCCCCc-------c
Q 043102 398 VREVIFLG------TIEVVKRT--GCKYTGITLAEK-----------------QLKYAGIKVKEADLERNDR-------S 445 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~--G~~VtGIdlS~e-----------------ql~~Ar~r~~~~gl~d~D~-------~ 445 (525)
+.+||||| +..++++. +++|+|||+|+. .++..++....... |. +
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~---D~V~S~~~~~ 128 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKV---QVVMSDMAPN 128 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCC---CEEecCCCCc
Confidence 34899999 66777764 379999999961 12222222211111 33 1
Q ss_pred -cCcc--c-------HHHHHHHHHhccCCCcEEEEEEe
Q 043102 446 -FGHE--Y-------MEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 446 -vg~~--~-------~~~~f~~i~r~LkpGG~~viq~i 473 (525)
.|.. + ....++.+.++|||||.+++..+
T Consensus 129 ~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 129 MSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 1211 1 24689999999999999999644
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0053 Score=59.92 Aligned_cols=104 Identities=11% Similarity=0.089 Sum_probs=67.7
Q ss_pred eehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcC--------CCCC------Cc--------ccC-ccc
Q 043102 400 EVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEAD--------LERN------DR--------SFG-HEY 450 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~g--------l~d~------D~--------~vg-~~~ 450 (525)
++||+| +..||.+ .-+++++|+|+..++.|++|++... +... |- .+. .+.
T Consensus 46 ~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYYL~~~~~ 124 (201)
T PF05401_consen 46 RALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYYLDDAED 124 (201)
T ss_dssp EEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGGSSSHHH
T ss_pred eeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHcCCCHHH
Confidence 789999 7788876 4599999999999999999986521 1111 22 223 357
Q ss_pred HHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 451 MEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
+..+.+.+...|+|||.+++-..- ....+. .|+.-..+.+...+.+. --+|.-.
T Consensus 125 L~~~l~~l~~~L~pgG~LV~g~~r------------d~~c~~----wgh~~ga~tv~~~~~~~-~~~~~~~ 178 (201)
T PF05401_consen 125 LRAALDRLVAALAPGGHLVFGHAR------------DANCRR----WGHAAGAETVLEMLQEH-LTEVERV 178 (201)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEE-------------HHHHHH----TT-S--HHHHHHHHHHH-SEEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEEEec------------CCcccc----cCcccchHHHHHHHHHH-hhheeEE
Confidence 889999999999999999996541 122222 24555677777777664 3445443
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.02 Score=58.57 Aligned_cols=79 Identities=15% Similarity=0.346 Sum_probs=62.2
Q ss_pred eehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------------------
Q 043102 400 EVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN------------------------------ 442 (525)
Q Consensus 400 rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------------------ 442 (525)
++||+| ++.++.. ..|+||+||.|+.-+..|.++++..++.++
T Consensus 151 ~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNP 230 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNP 230 (328)
T ss_pred eEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCC
Confidence 799999 4445544 369999999999999999999998887665
Q ss_pred ------Cc--------------c-----cCcccHHHHHHHHHhccCCCcEEEEEEecCCCc
Q 043102 443 ------DR--------------S-----FGHEYMEEFFGCCESLIAKDGLFVLQFISIPDE 478 (525)
Q Consensus 443 ------D~--------------~-----vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~ 478 (525)
|. + -|.+.+-.|+.-+.|+|+|||.+.+..+..++.
T Consensus 231 PYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~ 291 (328)
T KOG2904|consen 231 PYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEH 291 (328)
T ss_pred CcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccC
Confidence 11 1 134567788999999999999999987765544
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.023 Score=58.84 Aligned_cols=72 Identities=17% Similarity=0.275 Sum_probs=60.9
Q ss_pred eehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCC-C--------------Cc-------ccCccc
Q 043102 400 EVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLER-N--------------DR-------SFGHEY 450 (525)
Q Consensus 400 rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d-~--------------D~-------~vg~~~ 450 (525)
+|||+| .+.+|++. ..+||=+|+|..-++.||+.++..+++. . |. |-|+.-
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd~IisNPPfh~G~~v 240 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFDLIISNPPFHAGKAV 240 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccccEEEeCCCccCCcch
Confidence 899999 78888875 6899999999999999999999887775 2 22 666655
Q ss_pred HH----HHHHHHHhccCCCcEEEEE
Q 043102 451 ME----EFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 451 ~~----~~f~~i~r~LkpGG~~viq 471 (525)
.. ++|+...+.|++||.+.|-
T Consensus 241 ~~~~~~~~i~~A~~~L~~gGeL~iV 265 (300)
T COG2813 241 VHSLAQEIIAAAARHLKPGGELWIV 265 (300)
T ss_pred hHHHHHHHHHHHHHhhccCCEEEEE
Confidence 55 8999999999999998774
|
|
| >PLN02568 polyamine oxidase | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.11 Score=58.08 Aligned_cols=59 Identities=8% Similarity=0.045 Sum_probs=40.6
Q ss_pred cEEEEeCCCceEeCCEEEEecChHHHHH-------hhcCCCCHHHHhhccCCc-----eeEeccCCCCCCC
Q 043102 112 SCTVVCGDGSREFYNSCVMALHAPDALK-------ILGNQATFDETRTGGAFH-----DIFLHCDKNSMPQ 170 (525)
Q Consensus 112 gv~v~~~~g~~e~fD~VV~A~hadqAL~-------lL~~~~t~~E~~iLg~f~-----~~vlHtD~s~mP~ 170 (525)
+|.|.+.+|....+|+||++++.....+ .+....+..-++.+..+. .++++-+..+.++
T Consensus 272 ~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~ 342 (539)
T PLN02568 272 PVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKTDAISRLGFGVVNKLFVELSPRPDGS 342 (539)
T ss_pred eEEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCCHHHHHHHHhcCCceeeEEEEEecCCCCCc
Confidence 7889998998889999999999887664 233212222244445544 7888888776553
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.039 Score=56.71 Aligned_cols=73 Identities=15% Similarity=0.147 Sum_probs=49.9
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCC----------CCC-Cc--------ccC-----
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADL----------ERN-DR--------SFG----- 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl----------~d~-D~--------~vg----- 447 (525)
.+|||+| ++.++++. +.+|+|+|+|+++++.|+++..+..+ ..+ |. +..
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~~ 145 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDTK 145 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhhh
Confidence 4999999 55566654 68999999999999999987532111 001 22 111
Q ss_pred -----------ccc--HHHHHHHHHhccCCCcEEEEE
Q 043102 448 -----------HEY--MEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 448 -----------~~~--~~~~f~~i~r~LkpGG~~viq 471 (525)
.+. ...+++.+..+|+|+|.+.+-
T Consensus 146 ~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 146 DVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 111 367889999999999977653
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.017 Score=60.84 Aligned_cols=76 Identities=21% Similarity=0.223 Sum_probs=52.6
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC-----------------CC------------
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE-----------------RN------------ 442 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~-----------------d~------------ 442 (525)
..+||||| .....+..=..++|+|+|.+-++.|++|.++..-. |.
T Consensus 63 ~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~ 142 (331)
T PF03291_consen 63 GLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPR 142 (331)
T ss_dssp T-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSST
T ss_pred CCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcccc
Confidence 34999999 55555432369999999999999999999432100 00
Q ss_pred ----Cc-------cc---CcccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 443 ----DR-------SF---GHEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 443 ----D~-------~v---g~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
|. |- ..+....+++.|.+.|||||+|+..++
T Consensus 143 ~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 143 SRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 11 21 134567899999999999999998553
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PLN02676 polyamine oxidase | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.043 Score=60.57 Aligned_cols=60 Identities=17% Similarity=0.095 Sum_probs=40.9
Q ss_pred ccEEEEeCCCceEeCCEEEEecChHHHHH-hhcCCC--CHHHHhhccCCc-----eeEeccCCCCCCC
Q 043102 111 SSCTVVCGDGSREFYNSCVMALHAPDALK-ILGNQA--TFDETRTGGAFH-----DIFLHCDKNSMPQ 170 (525)
Q Consensus 111 ~gv~v~~~~g~~e~fD~VV~A~hadqAL~-lL~~~~--t~~E~~iLg~f~-----~~vlHtD~s~mP~ 170 (525)
.||.|.+.+|.+..+|+||+|+|.....+ .+.-+| +...++.+..+. .+++.-|..+.+.
T Consensus 261 ~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~ 328 (487)
T PLN02676 261 NGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWPS 328 (487)
T ss_pred CcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCCC
Confidence 47999999998899999999998654332 122223 233344555544 8888888877775
|
|
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.47 Score=52.03 Aligned_cols=53 Identities=19% Similarity=0.299 Sum_probs=36.0
Q ss_pred HHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCceEeCCEEEEecChHHHHH-hhc
Q 043102 79 ESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGSREFYNSCVMALHAPDALK-ILG 142 (525)
Q Consensus 79 ~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~~e~fD~VV~A~hadqAL~-lL~ 142 (525)
++.|+++..+..+.++..+++ +.+.|++.+|++..+|+||+|++..++.. ||.
T Consensus 230 ~~~G~~i~~~~~V~~i~~~~~-----------~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~ 283 (502)
T TIGR02734 230 EDLGGELRLNAEVIRIETEGG-----------RATAVHLADGERLDADAVVSNADLHHTYRRLLP 283 (502)
T ss_pred HHCCCEEEECCeEEEEEeeCC-----------EEEEEEECCCCEEECCEEEECCcHHHHHHHhcC
Confidence 344677777766666644221 12456667787788999999999988885 454
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.058 Score=53.08 Aligned_cols=119 Identities=13% Similarity=0.094 Sum_probs=87.9
Q ss_pred eehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC--------------------------Cc--
Q 043102 400 EVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN--------------------------DR-- 444 (525)
Q Consensus 400 rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~--------------------------D~-- 444 (525)
+||||| +.++|++ ...+..--|++++-..-.++.+++.+++.- |+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 599999 8888887 478999999999998888888888776533 22
Q ss_pred -----cc-CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcc--cCchhHHhhcccCCCCCCCHHHHHHHHHhcCCc
Q 043102 445 -----SF-GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEF--RLSSDFMKEYIFPGGCLPSLSRITSAMSAASRL 516 (525)
Q Consensus 445 -----~v-g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~--~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl 516 (525)
|+ ..+..+.+|+.+.++|++||.+++.--...+..+... ...+.+++.. =|..-+..++++.+..+++ ||
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~r-dp~~GiRD~e~v~~lA~~~-GL 185 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSR-DPEWGIRDIEDVEALAAAH-GL 185 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcC-CCCcCccCHHHHHHHHHHC-CC
Confidence 32 2345678899999999999999997655444433211 2345667654 5888899999998888775 88
Q ss_pred EEEE
Q 043102 517 WYNL 520 (525)
Q Consensus 517 ~V~~ 520 (525)
+..-
T Consensus 186 ~l~~ 189 (204)
T PF06080_consen 186 ELEE 189 (204)
T ss_pred ccCc
Confidence 8643
|
The function of this family is unknown. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.0091 Score=58.82 Aligned_cols=73 Identities=10% Similarity=0.059 Sum_probs=50.4
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc-ccC--c
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR-SFG--H 448 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~-~vg--~ 448 (525)
+..+||||| +.-+|+-- ..+|++|+..++..+.|+++++..++..- |+ +++ .
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~a~ 151 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTAAV 151 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESSBB
T ss_pred CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEeecc
Confidence 445999999 33344332 34899999999999999999998776432 44 332 3
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
+..+ ..+.+.||+||++++-.
T Consensus 152 ~~ip---~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 152 PEIP---EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp SS-----HHHHHTEEEEEEEEEEE
T ss_pred chHH---HHHHHhcCCCcEEEEEE
Confidence 3333 44667899999999843
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.018 Score=56.99 Aligned_cols=78 Identities=17% Similarity=0.257 Sum_probs=56.2
Q ss_pred eehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHc-----CCCCC----Cc----cc----CcccHHHHH
Q 043102 400 EVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEA-----DLERN----DR----SF----GHEYMEEFF 455 (525)
Q Consensus 400 rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~-----gl~d~----D~----~v----g~~~~~~~f 455 (525)
+||||| ++.++++ .++++|-.|+ ++.++.|++ .... .+-+. |. +| +.+.-...+
T Consensus 103 ~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f~~~P~~D~~~l~~vLh~~~d~~~~~iL 180 (241)
T PF00891_consen 103 TVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-ADRVEFVPGDFFDPLPVADVYLLRHVLHDWSDEDCVKIL 180 (241)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-TTTEEEEES-TTTCCSSESEEEEESSGGGS-HHHHHHHH
T ss_pred EEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-ccccccccccHHhhhccccceeeehhhhhcchHHHHHHH
Confidence 899999 6777776 4899999999 888888888 1110 00000 44 22 345677889
Q ss_pred HHHHhccCCC--cEEEEEEecCCCcc
Q 043102 456 GCCESLIAKD--GLFVLQFISIPDER 479 (525)
Q Consensus 456 ~~i~r~LkpG--G~~viq~i~~~~~~ 479 (525)
+++++.|+|| |+++|.+...++..
T Consensus 181 ~~~~~al~pg~~g~llI~e~~~~~~~ 206 (241)
T PF00891_consen 181 RNAAAALKPGKDGRLLIIEMVLPDDR 206 (241)
T ss_dssp HHHHHHSEECTTEEEEEEEEEECSSS
T ss_pred HHHHHHhCCCCCCeEEEEeeccCCCC
Confidence 9999999999 99999998887654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.015 Score=58.39 Aligned_cols=73 Identities=16% Similarity=0.119 Sum_probs=51.2
Q ss_pred eehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCC------CCC------------Cc-----ccCccc
Q 043102 400 EVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADL------ERN------------DR-----SFGHEY 450 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl------~d~------------D~-----~vg~~~ 450 (525)
-++|+| ++-+|+. =-+|+|+|+|++|++.|++.-...-. .+. |- ++.-=+
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd 114 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFD 114 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhhc
Confidence 679999 5666664 45999999999999999887543211 000 22 222236
Q ss_pred HHHHHHHHHhccCCCc-EEEEEEe
Q 043102 451 MEEFFGCCESLIAKDG-LFVLQFI 473 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG-~~viq~i 473 (525)
++.|++.++|+||++| .+++-..
T Consensus 115 le~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 115 LERFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred hHHHHHHHHHHcCCCCCEEEEEEc
Confidence 8899999999999866 7776544
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.028 Score=56.14 Aligned_cols=73 Identities=22% Similarity=0.310 Sum_probs=58.2
Q ss_pred eehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCC-CCC----Cc------------------ccC--
Q 043102 400 EVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADL-ERN----DR------------------SFG-- 447 (525)
Q Consensus 400 rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl-~d~----D~------------------~vg-- 447 (525)
-+|||| .+.+|++ ....+.||++...-+..|.+++.+.++ .-+ |+ ...
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDP 130 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPDP 130 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCCC
Confidence 789999 6667765 689999999999999999999999999 333 33 111
Q ss_pred ---cc------cHHHHHHHHHhccCCCcEEEEEE
Q 043102 448 ---HE------YMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 448 ---~~------~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.+ -.+.|++.+.+.|||||.+.+.+
T Consensus 131 WpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 131 WPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 11 25799999999999999998764
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.08 Score=51.17 Aligned_cols=76 Identities=12% Similarity=0.037 Sum_probs=55.3
Q ss_pred CCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC------Cc-------------------
Q 043102 397 KVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN------DR------------------- 444 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------------------- 444 (525)
++.+|||++ +++++.+ |+ +|++||+|++.++.++++++..+++++ |.
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr-ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR-GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 345899998 7888876 76 899999999999999999988887643 22
Q ss_pred --ccCcccHHHHHHHHH--hccCCCcEEEEEEe
Q 043102 445 --SFGHEYMEEFFGCCE--SLIAKDGLFVLQFI 473 (525)
Q Consensus 445 --~vg~~~~~~~f~~i~--r~LkpGG~~viq~i 473 (525)
-.+...++..++.+. .+|+++|.+++..-
T Consensus 128 DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 128 DPPFFNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 112234555565554 36889998888643
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.027 Score=56.55 Aligned_cols=117 Identities=12% Similarity=0.157 Sum_probs=75.1
Q ss_pred eehhhc------HHHHHHh---cCCEEEEEcCChHHHHHHHHHHHHcC---------CCCC-----------Cc------
Q 043102 400 EVIFLG------TIEVVKR---TGCKYTGITLAEKQLKYAGIKVKEAD---------LERN-----------DR------ 444 (525)
Q Consensus 400 rVLDIG------a~~lA~~---~G~~VtGIdlS~eql~~Ar~r~~~~g---------l~d~-----------D~------ 444 (525)
+||||| ...+.+. .+.+|.+.|.|+.-++..+++..... +... |.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 799999 3344432 24899999999999998888754211 1100 33
Q ss_pred --ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHH--hhcccCCC---CCCCHHHHHHHHHhcCCcE
Q 043102 445 --SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFM--KEYIFPGG---CLPSLSRITSAMSAASRLW 517 (525)
Q Consensus 445 --~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi--~kYIFPGg---~LPsl~~i~~~~~~a~gl~ 517 (525)
+|+.+.++..++.+.++|||||.+++-+.+..+-...... ...-| +-|+=-.| +.-+.+++...+.++ ||.
T Consensus 154 LSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~a-gf~ 231 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFK-KGQCISENFYVRGDGTRAYFFTEEELDELFTKA-GFE 231 (264)
T ss_pred EeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhcc-CCceeecceEEccCCceeeeccHHHHHHHHHhc-ccc
Confidence 6788899999999999999999999987665432100000 00011 11222222 335778888889996 665
Q ss_pred E
Q 043102 518 Y 518 (525)
Q Consensus 518 V 518 (525)
.
T Consensus 232 ~ 232 (264)
T KOG2361|consen 232 E 232 (264)
T ss_pred h
Confidence 4
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.02 Score=57.93 Aligned_cols=78 Identities=13% Similarity=0.032 Sum_probs=56.3
Q ss_pred ccCCCeehhhc------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc----------------
Q 043102 395 LFKVREVIFLG------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEADLERN------DR---------------- 444 (525)
Q Consensus 395 ~f~~~rVLDIG------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~---------------- 444 (525)
+-+..+|||.| +..+|+. ...+|.+.++.++.++.|++.++..|+.+. |.
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav 117 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAV 117 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEE
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEE
Confidence 34455999999 5566654 247999999999999999999999999765 32
Q ss_pred ccCcccHHHHHHHHHhcc-CCCcEEEEEE
Q 043102 445 SFGHEYMEEFFGCCESLI-AKDGLFVLQF 472 (525)
Q Consensus 445 ~vg~~~~~~~f~~i~r~L-kpGG~~viq~ 472 (525)
.+..++--.++..+.+.| ||||++++-.
T Consensus 118 fLDlp~Pw~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 118 FLDLPDPWEAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp EEESSSGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred EEeCCCHHHHHHHHHHHHhcCCceEEEEC
Confidence 122344456788888889 8899888754
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PLN03000 amine oxidase | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.12 Score=60.78 Aligned_cols=65 Identities=6% Similarity=-0.046 Sum_probs=42.4
Q ss_pred ceeeCccCCcccEEEEeCCCceEeCCEEEEecChHHHHH---hhcCCCCHHHHhhccCCc-----eeEeccCCCCCCC
Q 043102 101 GCEWGSRNGLSSCTVVCGDGSREFYNSCVMALHAPDALK---ILGNQATFDETRTGGAFH-----DIFLHCDKNSMPQ 170 (525)
Q Consensus 101 ~~e~~s~~~~~gv~v~~~~g~~e~fD~VV~A~hadqAL~---lL~~~~t~~E~~iLg~f~-----~~vlHtD~s~mP~ 170 (525)
.++|.. .||.|++.+ +...+|+||+|++.....+ .+.....+.-++.+..+. .++++-|..+.+.
T Consensus 401 ~I~~~~----dgV~V~~~~-~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~~ 473 (881)
T PLN03000 401 TIRYGS----NGVKVIAGN-QVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWST 473 (881)
T ss_pred EEEECC----CeEEEEECC-cEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccC
Confidence 345543 378888754 4688999999999886652 222212334456667666 8888877766654
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.032 Score=56.89 Aligned_cols=74 Identities=15% Similarity=0.062 Sum_probs=55.9
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHc--CCCCC----------------Cc-ccCcccHHH
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEA--DLERN----------------DR-SFGHEYMEE 453 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~--gl~d~----------------D~-~vg~~~~~~ 453 (525)
.+||=|| +.++.++ ..+|+=|||+++.++.+++.+... +++|. |. -+....-+.
T Consensus 74 k~VLIiGGGDGg~~REvLkh-~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIvDs~~~~~ 152 (262)
T PRK00536 74 KEVLIVDGFDLELAHQLFKY-DTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICLQEPDIH 152 (262)
T ss_pred CeEEEEcCCchHHHHHHHCc-CCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEEcCCCChH
Confidence 3999999 7788875 459999999999999999965431 23322 33 222223478
Q ss_pred HHHHHHhccCCCcEEEEEEe
Q 043102 454 FFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 454 ~f~~i~r~LkpGG~~viq~i 473 (525)
|++.|++.|+|||.++.|+-
T Consensus 153 fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 153 KIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred HHHHHHHhcCCCcEEEECCC
Confidence 99999999999999999963
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.037 Score=58.57 Aligned_cols=95 Identities=26% Similarity=0.386 Sum_probs=67.0
Q ss_pred HHHHhccccccchhcc----ccCC------------Ceehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHHH-
Q 043102 379 ELFCLFLDESLTYSCA----LFKV------------REVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIKV- 434 (525)
Q Consensus 379 d~y~l~Ld~~m~ys~a----~f~~------------~rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r~- 434 (525)
+-++++||-..+||.. |-+. .+||-+| +.++.+..+ -+||-||++++|++.|+...
T Consensus 255 ~d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~v 334 (508)
T COG4262 255 DDLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATV 334 (508)
T ss_pred CceEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhH
Confidence 4567888888877642 1111 1899999 667777555 49999999999999999442
Q ss_pred -HH--c-CCCCC-------Cc------------------------ccCcccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 435 -KE--A-DLERN-------DR------------------------SFGHEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 435 -~~--~-gl~d~-------D~------------------------~vg~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
++ . .++|. |+ .+|+=+-.+|..-..+.|+++|++++|.-
T Consensus 335 lr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 335 LRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred hhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 22 1 22332 22 33445567899999999999999999964
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.14 Score=52.12 Aligned_cols=116 Identities=13% Similarity=0.168 Sum_probs=68.6
Q ss_pred cCCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------Cc----c-cC-cccH
Q 043102 396 FKVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------------DR----S-FG-HEYM 451 (525)
Q Consensus 396 f~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------D~----~-vg-~~~~ 451 (525)
+...++|||| +..++.. =-+|+..++|..|.. |+++.|..-- |. . +. ...-
T Consensus 93 ~~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~----rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P 167 (265)
T PF05219_consen 93 WKDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRW----RLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP 167 (265)
T ss_pred ccCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHH----HHHhCCCeEEehhhhhccCCceEEEeehhhhhccCCH
Confidence 3345899999 6777764 457999999999954 4444443211 22 1 11 2345
Q ss_pred HHHHHHHHhccCCCcEEEEEEecCCCcchhccc-----CchhHHhhcccCCCCC-CCHHHHHHHHHhcCCcEEEEE
Q 043102 452 EEFFGCCESLIAKDGLFVLQFISIPDERYNEFR-----LSSDFMKEYIFPGGCL-PSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~-----~~~~fi~kYIFPGg~L-Psl~~i~~~~~~a~gl~V~~~ 521 (525)
.+.++.+++.|+|+|++++ .++.|-.+|-+.. +..+.+. | +|... -.++.++..++.+ ||+|..-
T Consensus 168 ~~LL~~i~~~l~p~G~lil-AvVlP~~pyVE~~~g~~~~P~e~l~--~-~g~~~E~~v~~l~~v~~p~-GF~v~~~ 238 (265)
T PF05219_consen 168 LTLLRDIRRALKPNGRLIL-AVVLPFRPYVEFGGGKSNRPSELLP--V-KGATFEEQVSSLVNVFEPA-GFEVERW 238 (265)
T ss_pred HHHHHHHHHHhCCCCEEEE-EEEecccccEEcCCCCCCCchhhcC--C-CCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 6899999999999999988 5555544443221 1122221 1 12100 1233455667774 9998753
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.089 Score=55.55 Aligned_cols=76 Identities=17% Similarity=0.315 Sum_probs=53.8
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHc--CCCCC-------Cc----------------cc
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEA--DLERN-------DR----------------SF 446 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~--gl~d~-------D~----------------~v 446 (525)
.+||.|| +.++++.. ..+|+.|||+++.++.|++..... ++.+. |+ .+
T Consensus 105 k~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~ 184 (336)
T PLN02823 105 KTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGDL 184 (336)
T ss_pred CEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEecC
Confidence 3899999 56666643 358999999999999999987432 22222 22 00
Q ss_pred ------Ccc---cHHHHHH-HHHhccCCCcEEEEEEec
Q 043102 447 ------GHE---YMEEFFG-CCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 447 ------g~~---~~~~~f~-~i~r~LkpGG~~viq~i~ 474 (525)
+.. +-.+|++ .+.+.|+|||++++|...
T Consensus 185 ~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 185 ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence 111 2357888 899999999999998643
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.048 Score=54.05 Aligned_cols=112 Identities=16% Similarity=0.122 Sum_probs=71.9
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH----------cCCCCC-------Cc--------ccC
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE----------ADLERN-------DR--------SFG 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~----------~gl~d~-------D~--------~vg 447 (525)
.+.||.| +..+.-..=-+|.-|+.++..++.|++.+.. .||++- |. |+.
T Consensus 57 ~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLT 136 (218)
T PF05891_consen 57 NRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLT 136 (218)
T ss_dssp SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGGS-
T ss_pred ceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhccCC
Confidence 3899999 3333322334999999999999999987644 223221 33 666
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
.+++-+||++|...|+|+|.+++-+-...... +.+-..+. ...-|...+.+.+++| ||+|+..
T Consensus 137 D~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~-~~~D~~Ds---------SvTRs~~~~~~lF~~A-Gl~~v~~ 199 (218)
T PF05891_consen 137 DEDLVAFLKRCKQALKPNGVIVVKENVSSSGF-DEFDEEDS---------SVTRSDEHFRELFKQA-GLRLVKE 199 (218)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE-EEEETTTT---------EEEEEHHHHHHHHHHC-T-EEEEE
T ss_pred HHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC-cccCCccC---------eeecCHHHHHHHHHHc-CCEEEEe
Confidence 78899999999999999999999765544321 11111111 1223556777788885 9998864
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.064 Score=50.36 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=33.1
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE 436 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~ 436 (525)
+.+||||| +.+++++ +++|+++|+|+.+++.+++++..
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~ 57 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA 57 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc
Confidence 34899999 7788876 89999999999999999998753
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.15 Score=55.51 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=36.5
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE 440 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~ 440 (525)
+.+|||+| ++.+|+. +.+|+|+|+|+++++.|+++++..++.
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~ 345 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGLD 345 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 35999999 7788875 689999999999999999999877764
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.13 Score=61.80 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=34.9
Q ss_pred CCCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcC
Q 043102 397 KVREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEAD 438 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~g 438 (525)
+..+||||| ++.++++. .++|+|+|+|++.++.|+++++..+
T Consensus 118 ~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~ 166 (1082)
T PLN02672 118 RDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNA 166 (1082)
T ss_pred CCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 344899999 67777764 4799999999999999999997643
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.094 Score=52.84 Aligned_cols=70 Identities=16% Similarity=0.106 Sum_probs=47.3
Q ss_pred CCeehhhc------HHHHHHh----cCCEEEEEcCChHHHHHHHHHHHHcCC-----C-----CC-Cc------------
Q 043102 398 VREVIFLG------TIEVVKR----TGCKYTGITLAEKQLKYAGIKVKEADL-----E-----RN-DR------------ 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~----~G~~VtGIdlS~eql~~Ar~r~~~~gl-----~-----d~-D~------------ 444 (525)
+.+|||+| ++.++++ ..++|++||+++.+++.|++++....+ . .+ |.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 45999999 5555553 256999999999999999988643211 1 01 22
Q ss_pred ------ccCcccHHHHHHHHHhccCCCcE
Q 043102 445 ------SFGHEYMEEFFGCCESLIAKDGL 467 (525)
Q Consensus 445 ------~vg~~~~~~~f~~i~r~LkpGG~ 467 (525)
|-|..-...+++++.++|++|+.
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 11223356788999997777775
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.18 Score=48.17 Aligned_cols=22 Identities=18% Similarity=0.372 Sum_probs=19.6
Q ss_pred HHHHHHHHHhccCCCcEEEEEE
Q 043102 451 MEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.+..++.+.++|||||++++..
T Consensus 125 ~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 125 VELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred HHHHHHHHHHHccCCCEEEEEE
Confidence 3688999999999999999864
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.45 Score=46.48 Aligned_cols=117 Identities=11% Similarity=0.086 Sum_probs=71.4
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHH-------HcCCCCC-----Cccc------CcccHHHH
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVK-------EADLERN-----DRSF------GHEYMEEF 454 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~-------~~gl~d~-----D~~v------g~~~~~~~ 454 (525)
.||||+| ..+|.++.++++.||+++++.+..+.+|-- +.||.+- |..+ ...+-...
T Consensus 15 srVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P~~v 94 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRRPDEV 94 (193)
T ss_pred CEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhHHHHH
Confidence 4999999 445555579999999999999988887721 1233221 2211 12334455
Q ss_pred HHHHHhccCCCcEEEEEEecCC----------Ccchh-cccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 455 FGCCESLIAKDGLFVLQFISIP----------DERYN-EFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 455 f~~i~r~LkpGG~~viq~i~~~----------~~~~~-~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
++++.|+ |..+++...... ..+.. ...-+..|... |.-++.|+.++....++. |++|.-.+
T Consensus 95 L~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdT---PNih~~Ti~DFe~lc~~~-~i~I~~~~ 166 (193)
T PF07021_consen 95 LEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDT---PNIHLCTIKDFEDLCREL-GIRIEERV 166 (193)
T ss_pred HHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCC---CCcccccHHHHHHHHHHC-CCEEEEEE
Confidence 6666544 666665432221 00000 00113456544 888999999999888885 99987654
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.15 Score=53.91 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=52.4
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc-----ccC----------cccHH
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR-----SFG----------HEYME 452 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~-----~vg----------~~~~~ 452 (525)
++++.- .|++|+|.|++..|+.-|+.+++..++++- |+ -.| .+-+.
T Consensus 212 LiEagl-~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~ 290 (347)
T COG1041 212 LIEAGL-MGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYE 290 (347)
T ss_pred HHhhhh-cCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCCcccccccccHHHHHH
Confidence 566554 599999999999999999999998875543 22 112 12388
Q ss_pred HHHHHHHhccCCCcEEEEEEe
Q 043102 453 EFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq~i 473 (525)
++|+.+.++||+||++++-.-
T Consensus 291 ~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 291 EALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred HHHHHHHHHhhcCcEEEEecC
Confidence 999999999999999988543
|
|
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.9 Score=49.85 Aligned_cols=147 Identities=14% Similarity=0.131 Sum_probs=88.6
Q ss_pred cEEEEeCCCceEeCCEEEEecChHHHHHhhcCCCCHHHHhhccCCc-----eeEeccCC---CCCCCCC-----------
Q 043102 112 SCTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH-----DIFLHCDK---NSMPQNP----------- 172 (525)
Q Consensus 112 gv~v~~~~g~~e~fD~VV~A~hadqAL~lL~~~~t~~E~~iLg~f~-----~~vlHtD~---s~mP~~~----------- 172 (525)
++.+.+.+|....||.||++.++.+..++|++ ......++.++ .+++==|. ...|.+.
T Consensus 244 ~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~---~~~~~~~~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~~ 320 (444)
T COG1232 244 GKTIVDVGGEKITADGVISTAPLPELARLLGD---EAVSKAAKELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPYI 320 (444)
T ss_pred ccEEEEcCCceEEcceEEEcCCHHHHHHHcCC---cchhhhhhhccccceEEEEEEeccccccCCCCceEEEEecCCCcc
Confidence 56777788888899999999999999999985 22233344443 33332222 2223321
Q ss_pred --CCccccccccCCCCCCCCCCCCC-e--EEEcCCCC--------------------------CCcc-eeeEEEecCCCC
Q 043102 173 --AAWSAWSFLGSLDSKNLGETSLP-Y--LVTLNPDH--------------------------APEH-TLLKWSTGPPVP 220 (525)
Q Consensus 173 --~aWaswNy~~~~~~~nl~~~~~~-~--fvTLNp~~--------------------------~p~~-il~~~~y~HPv~ 220 (525)
..|.+ |+...... + ++. + +++..... +|.. -+.||.+.-|+|
T Consensus 321 ~a~~~~S-~~~p~~~p----~-g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~~~~~~~~v~r~~~~~PqY 394 (444)
T COG1232 321 LAITFHS-NKWPHEAP----E-GKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGINGDPVFVEVTRWKYAMPQY 394 (444)
T ss_pred eeEEEec-ccCCCCCC----C-CcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHHcCcCcchhheeeeeccccCCcc
Confidence 11222 11111100 0 011 1 11122211 1111 345899999999
Q ss_pred CHHHHHHHHHhhh-hcC-CCCeEEeccCCCCCCchhhhchHHHHHhhhc
Q 043102 221 FVAASKASLELGH-IQG-RRGIWFRGAYQGYGFHEDGLKDLSINSCMTY 267 (525)
Q Consensus 221 ~~~a~~aq~~l~~-iqG-~~~~~fcGay~g~GfHEdg~~Sgl~aA~~ll 267 (525)
.+.-.+-.+.+.. |++ -.++...|+|...=--=|++.+|..||++|+
T Consensus 395 ~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g~g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 395 EVGHLDRLEPIRAALKGAYPGIKSVGRYGEGVGLPDCIAAGKEAAEQLL 443 (444)
T ss_pred chhHHHHHHHHHHhhccccCCeEEeccCCCCCCchHHHHHHHHHHHHhh
Confidence 9998877776664 542 3889999999865456799999999999884
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.43 Score=50.39 Aligned_cols=123 Identities=12% Similarity=0.192 Sum_probs=89.7
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------Cc--------ccCcccHHH
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------DR--------SFGHEYMEE 453 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------D~--------~vg~~~~~~ 453 (525)
...+|+| +..+..++. +|.||+.....+..+..... .|+++. |+ |.+.++.-+
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp-~ik~infdlp~v~~~a~~~~-~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedcvk 256 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP-HIKGINFDLPFVLAAAPYLA-PGVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDCVK 256 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC-CCceeecCHHHHHhhhhhhc-CCcceecccccccCCCcCeEEEEeecccCChHHHHH
Confidence 3789999 455555443 59999999999988888875 555433 44 556788999
Q ss_pred HHHHHHhccCCCcEEEEEEecCCC-cchhc----ccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEEec
Q 043102 454 FFGCCESLIAKDGLFVLQFISIPD-ERYNE----FRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAVST 524 (525)
Q Consensus 454 ~f~~i~r~LkpGG~~viq~i~~~~-~~~~~----~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~~~ 524 (525)
+|++|+..|+|||.+++-+...++ ...+. .....+.+..-+-++|-=-+..|....+.++ ||.+....+.
T Consensus 257 iLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~-gF~~~~~~~~ 331 (342)
T KOG3178|consen 257 ILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEE-GFPVCMVALT 331 (342)
T ss_pred HHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhh-cCceeEEEec
Confidence 999999999999999998876664 33221 1223455555566788888999999888885 8988776553
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.11 Score=53.89 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=36.9
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE 440 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~ 440 (525)
.+|||+| ++.+|++ +++|+|||+|+++++.|+++++..|+.
T Consensus 175 ~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l~ 221 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGLT 221 (315)
T ss_pred CEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 4899999 7888874 899999999999999999999988873
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.18 Score=51.95 Aligned_cols=72 Identities=26% Similarity=0.479 Sum_probs=54.5
Q ss_pred eehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHHHHHcC--CCC-C------Cc-------------------
Q 043102 400 EVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIKVKEAD--LER-N------DR------------------- 444 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r~~~~g--l~d-~------D~------------------- 444 (525)
+||-|| +.++.++.. .++|-|+|.++-++.|++.+.... ..| + |.
T Consensus 79 ~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~t 158 (282)
T COG0421 79 RVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDST 158 (282)
T ss_pred eEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcCC
Confidence 999999 666676532 599999999999999999986532 222 2 22
Q ss_pred -ccCcc---cHHHHHHHHHhccCCCcEEEEE
Q 043102 445 -SFGHE---YMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 445 -~vg~~---~~~~~f~~i~r~LkpGG~~viq 471 (525)
.+|.. .-..|++.|++.|+|+|+++.|
T Consensus 159 dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 159 DPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 22321 2379999999999999999999
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.094 Score=51.44 Aligned_cols=100 Identities=19% Similarity=0.235 Sum_probs=65.0
Q ss_pred hhhcccccchHHHHhccccccchhcccc-CCCeehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCC
Q 043102 369 HISRHYDLSNELFCLFLDESLTYSCALF-KVREVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLE 440 (525)
Q Consensus 369 nIa~hYDl~nd~y~l~Ld~~m~ys~a~f-~~~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~ 440 (525)
.+..+.|+..-+|+.-+....+.....+ +++.|||+- ++.+|+. .+++|.++|++++-+++.++.++..+++
T Consensus 72 G~~f~~D~~kvyfs~rl~~Er~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~ 151 (200)
T PF02475_consen 72 GIRFKVDLSKVYFSPRLSTERRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE 151 (200)
T ss_dssp TEEEEEETTTS---GGGHHHHHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T
T ss_pred CEEEEEccceEEEccccHHHHHHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC
Confidence 4555677776676665553333333333 345899975 8888873 3789999999999999999999998888
Q ss_pred CC------Cc------------ccC-cccHHHHHHHHHhccCCCcEE
Q 043102 441 RN------DR------------SFG-HEYMEEFFGCCESLIAKDGLF 468 (525)
Q Consensus 441 d~------D~------------~vg-~~~~~~~f~~i~r~LkpGG~~ 468 (525)
++ |+ .++ +..-..|+..+.+++|+||.+
T Consensus 152 ~~i~~~~~D~~~~~~~~~~drvim~lp~~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 152 NRIEVINGDAREFLPEGKFDRVIMNLPESSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp TTEEEEES-GGG---TT-EEEEEE--TSSGGGGHHHHHHHEEEEEEE
T ss_pred CeEEEEcCCHHHhcCccccCEEEECChHHHHHHHHHHHHHhcCCcEE
Confidence 76 44 122 223347888899999999875
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.56 Score=45.90 Aligned_cols=76 Identities=11% Similarity=0.029 Sum_probs=51.4
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----Cc--------------ccCcc---
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----DR--------------SFGHE--- 449 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D~--------------~vg~~--- 449 (525)
..+|||+| ++.++.+...+|++||++++.++.|+++++..+++.- |. -+.++
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~ 133 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFRK 133 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCCC
Confidence 34899998 5544444346999999999999999999988876421 22 11222
Q ss_pred -cHHHHHHHHHh--ccCCCcEEEEEEe
Q 043102 450 -YMEEFFGCCES--LIAKDGLFVLQFI 473 (525)
Q Consensus 450 -~~~~~f~~i~r--~LkpGG~~viq~i 473 (525)
..+..++.+.. +|+|+|.+++..-
T Consensus 134 g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 134 GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 23444555554 3788998888643
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.22 Score=51.30 Aligned_cols=72 Identities=24% Similarity=0.343 Sum_probs=51.6
Q ss_pred eehhhc-------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHH-HcCCCCC------------------Cc-----cc
Q 043102 400 EVIFLG-------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVK-EADLERN------------------DR-----SF 446 (525)
Q Consensus 400 rVLDIG-------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~-~~gl~d~------------------D~-----~v 446 (525)
+|+=|| ++.+++++ ++.|++||++++-.+.|++-++ ..||..+ |. .|
T Consensus 123 rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAalV 202 (276)
T PF03059_consen 123 RVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAALV 202 (276)
T ss_dssp EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT-
T ss_pred eEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhhc
Confidence 999999 88888775 5789999999999999999887 4566554 22 34
Q ss_pred C--cccHHHHHHHHHhccCCCcEEEEE
Q 043102 447 G--HEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 447 g--~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
| .+...+.|+.+.+.++||.++++-
T Consensus 203 g~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 203 GMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred ccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 4 457789999999999999999885
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.18 Score=52.95 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=35.5
Q ss_pred Ceehhhc------HHHHH-HhcCCEEEEEcCChHHHHHHHHHHHHc-CCCCC
Q 043102 399 REVIFLG------TIEVV-KRTGCKYTGITLAEKQLKYAGIKVKEA-DLERN 442 (525)
Q Consensus 399 ~rVLDIG------a~~lA-~~~G~~VtGIdlS~eql~~Ar~r~~~~-gl~d~ 442 (525)
.+||||| +..++ +.++++++|+|+|++.++.|++.++.. +++++
T Consensus 116 ~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~ 167 (321)
T PRK11727 116 VRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGA 167 (321)
T ss_pred ceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCc
Confidence 3999999 22333 446899999999999999999999987 67643
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.29 Score=54.45 Aligned_cols=75 Identities=12% Similarity=0.144 Sum_probs=57.5
Q ss_pred CCeehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------------------C
Q 043102 398 VREVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN---------------------------D 443 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------------------D 443 (525)
.+-+|||| +..+|+. ....+.||+++..-+..|.+++++.++..- |
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPD 427 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFPD 427 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECCC
Confidence 35899999 6677765 589999999999999999999888877532 1
Q ss_pred c-----ccCcc-cHHHHHHHHHhccCCCcEEEEEE
Q 043102 444 R-----SFGHE-YMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 444 ~-----~vg~~-~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
+ |--.+ -.+.|++.+.++|||||.+.+.+
T Consensus 428 PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 428 PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 1 11111 14689999999999999998764
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.88 Score=48.93 Aligned_cols=103 Identities=15% Similarity=0.121 Sum_probs=67.2
Q ss_pred Ceehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC-----Cc-------------ccCc-ccHH
Q 043102 399 REVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN-----DR-------------SFGH-EYME 452 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D~-------------~vg~-~~~~ 452 (525)
.+|||++ ++++|.+.++ +|+++|++++-++.++++++..++++. |+ .+.. .--.
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~Gs~~ 138 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPFGSPA 138 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCCCCcH
Confidence 3789988 7888776554 999999999999999999988777543 32 1111 1124
Q ss_pred HHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhc-ccCCCCCCCHHH
Q 043102 453 EFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEY-IFPGGCLPSLSR 505 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kY-IFPGg~LPsl~~ 505 (525)
.|++...+.+++||.+++. .+|...-.-.....-+++| .||. ..|...|
T Consensus 139 ~~l~~al~~~~~~gilyvS---AtD~~~L~g~y~~~~~~~yd~fP~-~~~~~~E 188 (382)
T PRK04338 139 PFLDSAIRSVKRGGLLCVT---ATDTAPLCGAYPKSCLRKYGAVPL-KTEFYHE 188 (382)
T ss_pred HHHHHHHHHhcCCCEEEEE---ecCchhhcCCChHHHHHHhcCccc-CCcchhH
Confidence 7788878889999999986 3332211001234456665 6664 3444333
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.23 Score=50.00 Aligned_cols=75 Identities=24% Similarity=0.372 Sum_probs=53.0
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHc--CCCCC-------Cc------------------
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEA--DLERN-------DR------------------ 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~--gl~d~-------D~------------------ 444 (525)
.+||=|| +.++.+.. -.+||.|+|+++.++.|++..... ++.+. |+
T Consensus 78 ~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D 157 (246)
T PF01564_consen 78 KRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVD 157 (246)
T ss_dssp -EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEE
T ss_pred CceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEe
Confidence 4999999 56666543 369999999999999999986542 22222 22
Q ss_pred ---ccCc---ccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 445 ---SFGH---EYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 445 ---~vg~---~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
..+. -.-.+|++.+.+.|+|||.+++|.-
T Consensus 158 ~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 158 LTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp SSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 1111 1347999999999999999999973
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.26 Score=51.98 Aligned_cols=73 Identities=23% Similarity=0.372 Sum_probs=52.3
Q ss_pred ccCCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC---------Ccc-------------
Q 043102 395 LFKVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN---------DRS------------- 445 (525)
Q Consensus 395 ~f~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~---------D~~------------- 445 (525)
+|++..|||+| ++..|+. |+ +|.+|+.|+ +.+.|++.++..++++. |-.
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akA-GA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW 135 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKA-GARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEW 135 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHh-CcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehh
Confidence 56666999999 6677764 75 999999996 45999999999998875 221
Q ss_pred cC-----cccHHHHHHHHHhccCCCcEEE
Q 043102 446 FG-----HEYMEEFFGCCESLIAKDGLFV 469 (525)
Q Consensus 446 vg-----~~~~~~~f~~i~r~LkpGG~~v 469 (525)
.| ..-+..++-.=.+.|+|||.++
T Consensus 136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 136 MGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 11 1123334444468999999875
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.42 Score=51.78 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=35.9
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE 440 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~ 440 (525)
.+|||+| ++.+|+. ..+|+|||+|+++++.|+++++..|+.
T Consensus 294 ~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~ 340 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIA 340 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCC
Confidence 4899999 7788875 679999999999999999999887764
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.49 Score=50.31 Aligned_cols=78 Identities=19% Similarity=0.278 Sum_probs=58.7
Q ss_pred Ceehhhc------HHHHHHh---cCCEEEEEcCChHHHHHHHHHHHHcCCCCC-------------------------Cc
Q 043102 399 REVIFLG------TIEVVKR---TGCKYTGITLAEKQLKYAGIKVKEADLERN-------------------------DR 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~---~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-------------------------D~ 444 (525)
.+|||+. +.++|+. .|..|+++|+|+.-++..+++++..|+..- |+
T Consensus 158 e~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDa 237 (355)
T COG0144 158 ERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLDA 237 (355)
T ss_pred CEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEECC
Confidence 3999998 5556554 367899999999999999999999998641 33
Q ss_pred ---ccC--------------------cccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 445 ---SFG--------------------HEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 445 ---~vg--------------------~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
..| .+-..+.++...++|||||+++-.+-+..
T Consensus 238 PCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 238 PCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred CCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 111 11245778899999999999988766553
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.2 Score=51.04 Aligned_cols=70 Identities=14% Similarity=0.232 Sum_probs=46.7
Q ss_pred eehhhc--HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH-----cCCCCC--Cccc-----CcccHHHHHHHHHhccCCC
Q 043102 400 EVIFLG--TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE-----ADLERN--DRSF-----GHEYMEEFFGCCESLIAKD 465 (525)
Q Consensus 400 rVLDIG--a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~-----~gl~d~--D~~v-----g~~~~~~~f~~i~r~LkpG 465 (525)
-|-|+| -..+|+..--+|...||-. +.+++.. ..|+|. |.+| --.++..|+.+++|+||+|
T Consensus 183 vIaD~GCGEakiA~~~~~kV~SfDL~a-----~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~g 257 (325)
T KOG3045|consen 183 VIADFGCGEAKIASSERHKVHSFDLVA-----VNERVIACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPG 257 (325)
T ss_pred EEEecccchhhhhhccccceeeeeeec-----CCCceeeccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccC
Confidence 677888 3345644456888888754 2333322 333443 4422 1368999999999999999
Q ss_pred cEEEEEEec
Q 043102 466 GLFVLQFIS 474 (525)
Q Consensus 466 G~~viq~i~ 474 (525)
|.+.|-+|.
T Consensus 258 G~l~IAEv~ 266 (325)
T KOG3045|consen 258 GLLYIAEVK 266 (325)
T ss_pred ceEEEEehh
Confidence 999998885
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.29 Score=45.49 Aligned_cols=75 Identities=16% Similarity=0.246 Sum_probs=48.8
Q ss_pred EEEEEcCChHHHHHHHHHHHHcCCCCC----------------C----c---ccC------------cccHHHHHHHHHh
Q 043102 416 KYTGITLAEKQLKYAGIKVKEADLERN----------------D----R---SFG------------HEYMEEFFGCCES 460 (525)
Q Consensus 416 ~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D----~---~vg------------~~~~~~~f~~i~r 460 (525)
+|.|.||-++-++.+++|+++.++.++ + + .+| .+---..++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 699999999999999999999998765 1 1 111 1223456888999
Q ss_pred ccCCCcEEEEEEecCCCcchhcccCchhHH
Q 043102 461 LIAKDGLFVLQFISIPDERYNEFRLSSDFM 490 (525)
Q Consensus 461 ~LkpGG~~viq~i~~~~~~~~~~~~~~~fi 490 (525)
+|+|||++.+-.-.-.++..++...-..|+
T Consensus 81 lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~ 110 (140)
T PF06962_consen 81 LLKPGGIITIVVYPGHPGGKEESEAVEEFL 110 (140)
T ss_dssp HEEEEEEEEEEE--STCHHHHHHHHHHHHH
T ss_pred hhccCCEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 999999999866543333333333334444
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.45 Score=52.57 Aligned_cols=78 Identities=10% Similarity=0.138 Sum_probs=58.1
Q ss_pred CCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------------Cc--
Q 043102 398 VREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------------DR-- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------------D~-- 444 (525)
+.+|||++ +.++|+.. ...|+++|+|+..++..+++++..|+..- |+
T Consensus 114 g~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPC 193 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPC 193 (470)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCC
Confidence 35999999 77777754 35999999999999999999999887531 33
Q ss_pred -ccC--cc------------------cHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 445 -SFG--HE------------------YMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 445 -~vg--~~------------------~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
..| .+ -..+.+..+.++|||||+++--+-++
T Consensus 194 SG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 194 SGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred CCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 111 01 12567888999999999996655444
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.39 E-value=0.18 Score=49.90 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=52.1
Q ss_pred eehhhc----------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcC--------CCCC-------------------
Q 043102 400 EVIFLG----------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEAD--------LERN------------------- 442 (525)
Q Consensus 400 rVLDIG----------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~g--------l~d~------------------- 442 (525)
+.|||| ++.+. ..|..++||+.=++-+++++++++.-- ++..
T Consensus 85 s~LdvGsGSGYLt~~~~~mvg-~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~Y 163 (237)
T KOG1661|consen 85 SFLDVGSGSGYLTACFARMVG-ATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPY 163 (237)
T ss_pred ceeecCCCccHHHHHHHHHhc-CCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCc
Confidence 899999 22223 347777999999999999999986522 1100
Q ss_pred Cc-ccCcccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 443 DR-SFGHEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 443 D~-~vg~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
|+ |||. .-++.-+++-..|||||+++|-.+
T Consensus 164 DaIhvGA-aa~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 164 DAIHVGA-AASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred ceEEEcc-CccccHHHHHHhhccCCeEEEeec
Confidence 55 8884 345667788899999999998544
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=91.24 E-value=1.2 Score=42.36 Aligned_cols=77 Identities=21% Similarity=0.328 Sum_probs=51.9
Q ss_pred ccCCCeehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcC--CCCC----------------------C
Q 043102 395 LFKVREVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEAD--LERN----------------------D 443 (525)
Q Consensus 395 ~f~~~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~g--l~d~----------------------D 443 (525)
.+...+|||+| ++.+|+. .+++|+-.|.++ -++..+.+++..+ ...+ |
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 44556999999 6667765 478999999999 8898998887644 2221 1
Q ss_pred c------ccCcccHHHHHHHHHhccCCCcEEEEEE
Q 043102 444 R------SFGHEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 444 ~------~vg~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
- ....+.++.+++.+.++|+|+|.+++..
T Consensus 122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 122 VILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred EEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 1 1135678999999999999999966644
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.5 Score=45.58 Aligned_cols=78 Identities=21% Similarity=0.318 Sum_probs=57.1
Q ss_pred CCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC------Cc-------------------
Q 043102 397 KVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN------DR------------------- 444 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------------------- 444 (525)
++.+|||+= .++++.+ || +|+-||.|.+-++..+++++..++.++ |.
T Consensus 42 ~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 344888874 7788886 75 999999999999999999999888764 32
Q ss_pred --ccCccc-HHHHHHHHH--hccCCCcEEEEEEecC
Q 043102 445 --SFGHEY-MEEFFGCCE--SLIAKDGLFVLQFISI 475 (525)
Q Consensus 445 --~vg~~~-~~~~f~~i~--r~LkpGG~~viq~i~~ 475 (525)
-..... ++..++.+. .+|+++|.+++..-..
T Consensus 121 DPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp --STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 111233 477888887 8999999999976443
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.25 Score=45.55 Aligned_cols=73 Identities=16% Similarity=0.177 Sum_probs=46.6
Q ss_pred Ceehhhc-------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------Cc----cc-CcccHHHHHHH
Q 043102 399 REVIFLG-------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------DR----SF-GHEYMEEFFGC 457 (525)
Q Consensus 399 ~rVLDIG-------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------D~----~v-g~~~~~~~f~~ 457 (525)
.+||||| |..|++ .|++|++||+|++-++.|+++.-..-..|- ++ ++ ..+++...+-+
T Consensus 18 ~kileIG~GfG~~vA~~L~~-~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~~~ 96 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKE-SGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFILE 96 (134)
T ss_pred CEEEEEEecCCHHHHHHHHH-CCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHHH
Confidence 4899999 666776 599999999999988877766422211221 22 22 34566666666
Q ss_pred HHhccCCCcEEEEEEec
Q 043102 458 CESLIAKDGLFVLQFIS 474 (525)
Q Consensus 458 i~r~LkpGG~~viq~i~ 474 (525)
+.+.+ |.-++|...+
T Consensus 97 la~~~--~~~~~i~~l~ 111 (134)
T PRK04148 97 LAKKI--NVPLIIKPLS 111 (134)
T ss_pred HHHHc--CCCEEEEcCC
Confidence 66655 4455555444
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=90.09 E-value=0.53 Score=49.62 Aligned_cols=70 Identities=16% Similarity=0.279 Sum_probs=52.2
Q ss_pred CCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc--------
Q 043102 397 KVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN-----------------DR-------- 444 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~-------- 444 (525)
.+.-|||+| +..+|+. |+ +|.+|+-| +|.++|++.++...+.++ |.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~ 254 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGY 254 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-CcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchh
Confidence 334899999 5566654 65 99999988 699999999988777776 22
Q ss_pred -ccCcccHHHHHHHHHhccCCCcEEE
Q 043102 445 -SFGHEYMEEFFGCCESLIAKDGLFV 469 (525)
Q Consensus 445 -~vg~~~~~~~f~~i~r~LkpGG~~v 469 (525)
.+..+-++.|+-. .+.|||.|.++
T Consensus 255 mL~NERMLEsYl~A-rk~l~P~GkMf 279 (517)
T KOG1500|consen 255 MLVNERMLESYLHA-RKWLKPNGKMF 279 (517)
T ss_pred hhhhHHHHHHHHHH-HhhcCCCCccc
Confidence 2234556677644 49999999986
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=90.00 E-value=0.37 Score=52.90 Aligned_cols=71 Identities=20% Similarity=0.364 Sum_probs=53.3
Q ss_pred Ceehhhc---------HHHHHHhcC--CEEEEEcCChHHHHHHHHHHHHcCCCCC------C-----------c------
Q 043102 399 REVIFLG---------TIEVVKRTG--CKYTGITLAEKQLKYAGIKVKEADLERN------D-----------R------ 444 (525)
Q Consensus 399 ~rVLDIG---------a~~lA~~~G--~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D-----------~------ 444 (525)
..||||| ++.++++.+ .+|++|+-|+......++++++.+++++ | -
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElL 267 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELL 267 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEecc
Confidence 3799999 333333323 5999999999888888888888888777 2 2
Q ss_pred -ccC-cccHHHHHHHHHhccCCCcEEE
Q 043102 445 -SFG-HEYMEEFFGCCESLIAKDGLFV 469 (525)
Q Consensus 445 -~vg-~~~~~~~f~~i~r~LkpGG~~v 469 (525)
.+| .+-.++.+....|.|||||.++
T Consensus 268 Gsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 268 GSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred CCccccccCHHHHHHHHhhcCCCCEEe
Confidence 222 4567889999999999999886
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.99 E-value=0.52 Score=48.89 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=35.7
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE 440 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~ 440 (525)
++++||||| +..+++. +.+|+++|+|+.+++.++++++..++.
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~ 84 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLA 84 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCC
Confidence 445999999 5667765 789999999999999999998776643
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=89.74 E-value=0.65 Score=48.09 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=21.7
Q ss_pred cCcccHHHHHHHHHhccCCCcEEEEE
Q 043102 446 FGHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 446 vg~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
+..+.....++.+.+.|+|||++++-
T Consensus 236 F~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 236 FDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 34566889999999999999998773
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=89.57 E-value=0.23 Score=49.19 Aligned_cols=93 Identities=14% Similarity=0.240 Sum_probs=54.0
Q ss_pred eehhhc--HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcC-----CCCC--Ccc-----cCcccHHHHHHHHHhccC
Q 043102 400 EVIFLG--TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEAD-----LERN--DRS-----FGHEYMEEFFGCCESLIA 463 (525)
Q Consensus 400 rVLDIG--a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~g-----l~d~--D~~-----vg~~~~~~~f~~i~r~Lk 463 (525)
.|-|+| -..+|+. .+.+|...||-.. .+++-++. |++. |.. +=-.+|..|++++.|+||
T Consensus 75 viaD~GCGdA~la~~~~~~~~V~SfDLva~-----n~~Vtacdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK 149 (219)
T PF05148_consen 75 VIADFGCGDAKLAKAVPNKHKVHSFDLVAP-----NPRVTACDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLK 149 (219)
T ss_dssp -EEEES-TT-HHHHH--S---EEEEESS-S-----STTEEES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEE
T ss_pred EEEECCCchHHHHHhcccCceEEEeeccCC-----CCCEEEecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheec
Confidence 789999 2223332 3568999998653 12332222 2222 441 113589999999999999
Q ss_pred CCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 464 KDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 464 pGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
|||.+.|-++. +++ ....++++.+++- ||.+..-
T Consensus 150 ~~G~L~IAEV~---SRf--------------------~~~~~F~~~~~~~-GF~~~~~ 183 (219)
T PF05148_consen 150 PGGILKIAEVK---SRF--------------------ENVKQFIKALKKL-GFKLKSK 183 (219)
T ss_dssp EEEEEEEEEEG---GG---------------------S-HHHHHHHHHCT-TEEEEEE
T ss_pred cCcEEEEEEec---ccC--------------------cCHHHHHHHHHHC-CCeEEec
Confidence 99999999885 232 1556677777774 8877653
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=89.32 E-value=0.35 Score=49.26 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=32.0
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVK 435 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~ 435 (525)
+.+||||| +..++++ +.+|+|+|+|++|++.+++++.
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~~~~~~~~~ 85 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLAPILAETFA 85 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHHHHHHHhhc
Confidence 35899999 7778876 6799999999999999998774
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=89.30 E-value=0.21 Score=43.93 Aligned_cols=102 Identities=20% Similarity=0.184 Sum_probs=63.1
Q ss_pred hc--HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc---ccCcccHHHHHHHHHhc
Q 043102 404 LG--TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR---SFGHEYMEEFFGCCESL 461 (525)
Q Consensus 404 IG--a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~---~vg~~~~~~~f~~i~r~ 461 (525)
|| ++.+|+..|++|+++|.|++.++.+++.-...-+... |. .+| -+..++....+
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g---~~~~~~~~~~~ 78 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG---SGDTLQEAIKL 78 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS---SHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC---cHHHHHHHHHH
Confidence 56 7889988899999999999998888764311111111 11 334 25789999999
Q ss_pred cCCCcEEEEEEecCCCcchhcccCchhHH-hhcccCCCCCCCHHHHHHHHH
Q 043102 462 IAKDGLFVLQFISIPDERYNEFRLSSDFM-KEYIFPGGCLPSLSRITSAMS 511 (525)
Q Consensus 462 LkpGG~~viq~i~~~~~~~~~~~~~~~fi-~kYIFPGg~LPsl~~i~~~~~ 511 (525)
|+|||++++-........ . .....++ +.--+=|....+..++.++++
T Consensus 79 l~~~G~~v~vg~~~~~~~-~--~~~~~~~~~~~~i~g~~~~~~~~~~~~~~ 126 (130)
T PF00107_consen 79 LRPGGRIVVVGVYGGDPI-S--FNLMNLMFKEITIRGSWGGSPEDFQEALQ 126 (130)
T ss_dssp EEEEEEEEEESSTSTSEE-E--EEHHHHHHTTEEEEEESSGGHHHHHHHHH
T ss_pred hccCCEEEEEEccCCCCC-C--CCHHHHHhCCcEEEEEccCCHHHHHHHHH
Confidence 999999998655541111 0 1122232 222223556666777766654
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=88.74 E-value=0.27 Score=42.25 Aligned_cols=58 Identities=19% Similarity=0.098 Sum_probs=29.1
Q ss_pred CEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc---------------cc-C---cccHHHHHHHHHhccCCCcEEE
Q 043102 415 CKYTGITLAEKQLKYAGIKVKEADLERN------DR---------------SF-G---HEYMEEFFGCCESLIAKDGLFV 469 (525)
Q Consensus 415 ~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~---------------~v-g---~~~~~~~f~~i~r~LkpGG~~v 469 (525)
.++++||..+. .+.+++.+++.++.++ |. .+ | .+.....++.+.+.|+|||.++
T Consensus 24 ~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~~~~~~~dl~~~~~~l~~ggviv 102 (106)
T PF13578_consen 24 GKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHSYEAVLRDLENALPRLAPGGVIV 102 (106)
T ss_dssp ---EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---HHHHHHHHHHHGGGEEEEEEEE
T ss_pred CCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 48999999986 4445555555565544 11 12 1 1345677889999999999999
Q ss_pred EEEe
Q 043102 470 LQFI 473 (525)
Q Consensus 470 iq~i 473 (525)
+|.+
T Consensus 103 ~dD~ 106 (106)
T PF13578_consen 103 FDDY 106 (106)
T ss_dssp EE--
T ss_pred EeCc
Confidence 9864
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=87.76 E-value=1.2 Score=46.72 Aligned_cols=73 Identities=14% Similarity=0.291 Sum_probs=51.5
Q ss_pred eehhhc---------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------C------c-
Q 043102 400 EVIFLG---------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------D------R- 444 (525)
Q Consensus 400 rVLDIG---------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D------~- 444 (525)
.|+|+| .+.+.++ ..++.++||+|+++++.+.++++...+..- + +
T Consensus 79 ~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r 158 (319)
T TIGR03439 79 MLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPT 158 (319)
T ss_pred EEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCcc
Confidence 799999 1122222 257999999999999999999983222211 1 1
Q ss_pred -------ccC---cccHHHHHHHHHh-ccCCCcEEEEEE
Q 043102 445 -------SFG---HEYMEEFFGCCES-LIAKDGLFVLQF 472 (525)
Q Consensus 445 -------~vg---~~~~~~~f~~i~r-~LkpGG~~viq~ 472 (525)
.+| ...-..|++.+.+ .|+|||.++|-.
T Consensus 159 ~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 159 TILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred EEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 222 4456689999999 999999999843
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=87.69 E-value=2.6 Score=43.79 Aligned_cols=109 Identities=8% Similarity=0.096 Sum_probs=71.8
Q ss_pred eehhhc------HHHHHHhc-C--CEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc-------------c----cC
Q 043102 400 EVIFLG------TIEVVKRT-G--CKYTGITLAEKQLKYAGIKVKEADLERN------DR-------------S----FG 447 (525)
Q Consensus 400 rVLDIG------a~~lA~~~-G--~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~-------------~----vg 447 (525)
|||||. .+.+.+.+ . ..|.=.|.|+.-++..++.+++.||++. |+ + .|
T Consensus 138 rIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsG 217 (311)
T PF12147_consen 138 RILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSG 217 (311)
T ss_pred EEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEec
Confidence 999998 33333332 2 5899999999999999999999999875 33 1 12
Q ss_pred ------c-ccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcc------cCCC-CCCCHHHHHHHHHhc
Q 043102 448 ------H-EYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYI------FPGG-CLPSLSRITSAMSAA 513 (525)
Q Consensus 448 ------~-~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYI------FPGg-~LPsl~~i~~~~~~a 513 (525)
. +-....++-+.++|.|||.++... ++|. +...+|.+-. -|.. ..-|-.|+-+.++++
T Consensus 218 L~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg-----QPwH---PQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~a 289 (311)
T PF12147_consen 218 LYELFPDNDLVRRSLAGLARALEPGGYLIYTG-----QPWH---PQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAA 289 (311)
T ss_pred chhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC-----CCCC---cchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHc
Confidence 1 225567899999999999997643 2221 1122222111 1111 236788999888886
Q ss_pred CCcE
Q 043102 514 SRLW 517 (525)
Q Consensus 514 ~gl~ 517 (525)
||+
T Consensus 290 -GF~ 292 (311)
T PF12147_consen 290 -GFE 292 (311)
T ss_pred -CCc
Confidence 775
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.15 E-value=0.85 Score=48.28 Aligned_cols=76 Identities=17% Similarity=0.170 Sum_probs=54.6
Q ss_pred CCeehhhc-------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------CcccCcccHHHHHHHH
Q 043102 398 VREVIFLG-------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------------DRSFGHEYMEEFFGCC 458 (525)
Q Consensus 398 ~~rVLDIG-------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------D~~vg~~~~~~~f~~i 458 (525)
.++|+=+| |+++|+..|++|+++|.|++-.+.|++.-+...+..+ |..+..-. +.-|...
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~~ 245 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEPS 245 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHHH
Confidence 34777777 8899987899999999999999999988544333211 22111122 5667778
Q ss_pred HhccCCCcEEEEEEec
Q 043102 459 ESLIAKDGLFVLQFIS 474 (525)
Q Consensus 459 ~r~LkpGG~~viq~i~ 474 (525)
.+.||+||++++--+.
T Consensus 246 l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 246 LKALRRGGTLVLVGLP 261 (339)
T ss_pred HHHHhcCCEEEEECCC
Confidence 8999999999875443
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=87.09 E-value=0.62 Score=47.04 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=33.8
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE 436 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~ 436 (525)
++.+||||| +..++++ +.+|+|||+++.+++.++++++.
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~ 73 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA 73 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc
Confidence 445999999 7788876 78999999999999999998754
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=86.39 E-value=1.9 Score=41.72 Aligned_cols=72 Identities=15% Similarity=0.214 Sum_probs=55.3
Q ss_pred eehhhc------HHHHHH-hcCCEEEEEcCChHHHHHHHHHHHHcCCCCC--------C--------ccc--CcccHHHH
Q 043102 400 EVIFLG------TIEVVK-RTGCKYTGITLAEKQLKYAGIKVKEADLERN--------D--------RSF--GHEYMEEF 454 (525)
Q Consensus 400 rVLDIG------a~~lA~-~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~--------D--------~~v--g~~~~~~~ 454 (525)
++|||| .+-+|= ....+|+-+|-+..-.++.++-+++.||++- + ..+ .......+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~l~~l 130 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAPLDKL 130 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSSHHHH
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcCHHHH
Confidence 799999 333332 2578999999999999999999999999743 2 111 23468899
Q ss_pred HHHHHhccCCCcEEEEE
Q 043102 455 FGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 455 f~~i~r~LkpGG~~viq 471 (525)
++-+..+||+||++++.
T Consensus 131 ~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 131 LELARPLLKPGGRLLAY 147 (184)
T ss_dssp HHHHGGGEEEEEEEEEE
T ss_pred HHHHHHhcCCCCEEEEE
Confidence 99999999999999875
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=86.36 E-value=0.63 Score=45.48 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=20.6
Q ss_pred CcccHHHHHHHHHhccCCCcEEEE
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVL 470 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~vi 470 (525)
..+.....++.+++.|+|||.+++
T Consensus 150 ~~~~~~~vl~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 150 DPETQQRVLRRLHRSLKPGGYLFL 173 (196)
T ss_dssp -HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEE
Confidence 456678999999999999999988
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=86.35 E-value=1.4 Score=44.15 Aligned_cols=114 Identities=13% Similarity=0.133 Sum_probs=64.6
Q ss_pred CCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHH-HHHHHH--HcCCCCC----------Cc---ccCcccHHH
Q 043102 397 KVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKY-AGIKVK--EADLERN----------DR---SFGHEYMEE 453 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~-Ar~r~~--~~gl~d~----------D~---~vg~~~~~~ 453 (525)
++..||||| +..++++ |+ +|+|||+|++|+.. .++..+ ..+..+- |- .+..--+..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~~ 153 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLIS 153 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehHh
Confidence 344899999 7778875 65 89999999999887 333221 0111111 11 111112344
Q ss_pred HHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCC-------HHHHHHHHHhcCCcEEEEEEec
Q 043102 454 FFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPS-------LSRITSAMSAASRLWYNLAVST 524 (525)
Q Consensus 454 ~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPs-------l~~i~~~~~~a~gl~V~~~~~~ 524 (525)
.+..+.++|+| |.+++-. .+.|+..+ .-+ =.+|-+-. +.++...+++ -||++.-.+.|
T Consensus 154 ~l~~i~~~l~~-~~~~~L~----KPqFE~~~---~~~----~~~giv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s 218 (228)
T TIGR00478 154 ILPELDLLLNP-NDLTLLF----KPQFEAGR---EKK----NKKGVVRDKEAIALALHKVIDKGES-PDFQEKKIIFS 218 (228)
T ss_pred HHHHHHHHhCc-CeEEEEc----ChHhhhcH---hhc----CcCCeecCHHHHHHHHHHHHHHHHc-CCCeEeeEEEC
Confidence 68999999999 8776543 23344221 111 12444433 3455555555 48887665544
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.30 E-value=1.8 Score=45.95 Aligned_cols=78 Identities=19% Similarity=0.327 Sum_probs=61.4
Q ss_pred eehhh----c--HHHHHHhcCCE-EEEEcCChHHHHHHHHHHHHcCCCCC------Cc-------------ccCc-ccHH
Q 043102 400 EVIFL----G--TIEVVKRTGCK-YTGITLAEKQLKYAGIKVKEADLERN------DR-------------SFGH-EYME 452 (525)
Q Consensus 400 rVLDI----G--a~~lA~~~G~~-VtGIdlS~eql~~Ar~r~~~~gl~d~------D~-------------~vg~-~~~~ 452 (525)
+|||. | ++.+|+. |+. |+++||++.-+++.+++++..++++. |+ -+|. ..-.
T Consensus 191 ~V~DmFAGVGpfsi~~Ak~-g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~~a~ 269 (341)
T COG2520 191 TVLDMFAGVGPFSIPIAKK-GRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPKSAH 269 (341)
T ss_pred EEEEccCCcccchhhhhhc-CCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCCcch
Confidence 55653 4 8888985 765 99999999999999999999888775 44 2232 2346
Q ss_pred HHHHHHHhccCCCcEEEEEEecCCCc
Q 043102 453 EFFGCCESLIAKDGLFVLQFISIPDE 478 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq~i~~~~~ 478 (525)
.|+....+.||+||.+-.+.++..+.
T Consensus 270 ~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 270 EFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred hhHHHHHHHhhcCcEEEEEeccchhh
Confidence 78999999999999999998876554
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=86.04 E-value=0.97 Score=47.07 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=33.4
Q ss_pred eehhhc-------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHc-CCCCC
Q 043102 400 EVIFLG-------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEA-DLERN 442 (525)
Q Consensus 400 rVLDIG-------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~-gl~d~ 442 (525)
++|||| .+-.++.+|.+++|.|++++-++.|++.++.- +|+++
T Consensus 105 ~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~ 155 (299)
T PF05971_consen 105 RGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESR 155 (299)
T ss_dssp EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTT
T ss_pred EeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccc
Confidence 899999 33345668999999999999999999999987 88766
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=85.82 E-value=1.1 Score=40.95 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=35.3
Q ss_pred Ceehhhc------HHHHHH-----hcCCEEEEEcCChHHHHHHHHHHHHcC
Q 043102 399 REVIFLG------TIEVVK-----RTGCKYTGITLAEKQLKYAGIKVKEAD 438 (525)
Q Consensus 399 ~rVLDIG------a~~lA~-----~~G~~VtGIdlS~eql~~Ar~r~~~~g 438 (525)
.+|+|+| +..++. .++.+|+|||.+++.++.|+++.++.+
T Consensus 27 ~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 27 ITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 3899999 666776 679999999999999999999998876
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=85.53 E-value=1.1 Score=47.88 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=35.8
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE 440 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~ 440 (525)
.+|||+| ++.+|.+ +.+|+|||+|++.++.|+++++..+++
T Consensus 235 ~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~~ 281 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGLD 281 (374)
T ss_pred CEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCCC
Confidence 3899998 6777864 789999999999999999999888774
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.30 E-value=1.3 Score=46.72 Aligned_cols=70 Identities=21% Similarity=0.319 Sum_probs=50.1
Q ss_pred eehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHHHHHcC-CCC------------C------------Cc---
Q 043102 400 EVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIKVKEAD-LER------------N------------DR--- 444 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r~~~~g-l~d------------~------------D~--- 444 (525)
.|||+| ++..-+. | ..++||||++.-++.|++|.++.- ..+ . |+
T Consensus 120 ~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fD 198 (389)
T KOG1975|consen 120 DVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFD 198 (389)
T ss_pred ccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcc
Confidence 788877 5554443 4 499999999999999999986521 111 0 22
Q ss_pred --------cc---CcccHHHHHHHHHhccCCCcEEEE
Q 043102 445 --------SF---GHEYMEEFFGCCESLIAKDGLFVL 470 (525)
Q Consensus 445 --------~v---g~~~~~~~f~~i~r~LkpGG~~vi 470 (525)
|. ..+...-+++.+.++|||||.|+-
T Consensus 199 ivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 199 IVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred eeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence 22 234566789999999999999975
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=84.88 E-value=3.3 Score=40.74 Aligned_cols=72 Identities=22% Similarity=0.271 Sum_probs=50.1
Q ss_pred ehhhc------HHHHHHhcCC--EEEEEcCChHHHHHHHHHHHHcCCCCC------Cc----------------ccCccc
Q 043102 401 VIFLG------TIEVVKRTGC--KYTGITLAEKQLKYAGIKVKEADLERN------DR----------------SFGHEY 450 (525)
Q Consensus 401 VLDIG------a~~lA~~~G~--~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~----------------~vg~~~ 450 (525)
|.||| .++|+++ |. +|+++|+++.-++.|++.++..|+.++ |. -+|-.-
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHHH
Confidence 57899 7888886 54 899999999999999999999999887 22 123333
Q ss_pred HHHHHHHHHhccCCCcEEEEEEe
Q 043102 451 MEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~i 473 (525)
..+.++.....++.--.+++|..
T Consensus 80 I~~ILe~~~~~~~~~~~lILqP~ 102 (205)
T PF04816_consen 80 IIEILEAGPEKLSSAKRLILQPN 102 (205)
T ss_dssp HHHHHHHTGGGGTT--EEEEEES
T ss_pred HHHHHHhhHHHhccCCeEEEeCC
Confidence 45556655566655556666654
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=84.62 E-value=0.75 Score=50.79 Aligned_cols=72 Identities=15% Similarity=0.169 Sum_probs=43.7
Q ss_pred eehhhc------HHHHHHhcCCEEEEEc---CChHHHHHHHHHH-HH-cCC--CCC--------Cc-ccC------cccH
Q 043102 400 EVIFLG------TIEVVKRTGCKYTGIT---LAEKQLKYAGIKV-KE-ADL--ERN--------DR-SFG------HEYM 451 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G~~VtGId---lS~eql~~Ar~r~-~~-~gl--~d~--------D~-~vg------~~~~ 451 (525)
.+|||| +.++.++ +..+..+. -.+.|+++|.+|- .. .++ ..+ |- |.+ ..+-
T Consensus 120 ~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~ 198 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPND 198 (506)
T ss_pred EEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcc
Confidence 689999 5555654 65555543 3345888888772 11 111 111 44 322 1222
Q ss_pred HHHHHHHHhccCCCcEEEEEE
Q 043102 452 EEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~ 472 (525)
.-++-++.|+|+|||.+++..
T Consensus 199 g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 199 GFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred cceeehhhhhhccCceEEecC
Confidence 458899999999999998854
|
; GO: 0008168 methyltransferase activity |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=82.70 E-value=2.3 Score=38.04 Aligned_cols=41 Identities=15% Similarity=0.142 Sum_probs=33.3
Q ss_pred eehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCC
Q 043102 400 EVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLE 440 (525)
Q Consensus 400 rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~ 440 (525)
.||||| +..+++.. +++|++++.++++++.++++++..++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~ 48 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP 48 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC
Confidence 379999 66666652 458999999999999999999877664
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=82.38 E-value=1.7 Score=41.32 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=32.9
Q ss_pred ehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC
Q 043102 401 VIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN 442 (525)
Q Consensus 401 VLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~ 442 (525)
|||+. ++.+|+. ..+|++||++++.++.|+.+++-.|++++
T Consensus 3 vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~ 49 (163)
T PF09445_consen 3 VLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADN 49 (163)
T ss_dssp EEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGG
T ss_pred EEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCc
Confidence 56654 9999985 78999999999999999999999998644
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=82.20 E-value=1.9 Score=45.84 Aligned_cols=40 Identities=8% Similarity=0.186 Sum_probs=34.6
Q ss_pred eehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC
Q 043102 400 EVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE 440 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~ 440 (525)
+|||++ ++.+++. ..+|+|||+|+++++.|+++++..|++
T Consensus 200 ~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~ 245 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID 245 (353)
T ss_pred cEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 699998 7777775 459999999999999999999888774
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=81.47 E-value=7.9 Score=37.77 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=55.5
Q ss_pred ccCCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc----------------cc
Q 043102 395 LFKVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------DR----------------SF 446 (525)
Q Consensus 395 ~f~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~----------------~v 446 (525)
++.+.++||+= .++++.+.-..|+-||.|.+-....+++++..+++.+ |+ -+
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 35566899974 7788887445999999999999999999999886655 33 01
Q ss_pred C----cccHHHHHHH----HHhccCCCcEEEEEEe
Q 043102 447 G----HEYMEEFFGC----CESLIAKDGLFVLQFI 473 (525)
Q Consensus 447 g----~~~~~~~f~~----i~r~LkpGG~~viq~i 473 (525)
. ..-++..... -..+|+|+|.+++..-
T Consensus 121 DPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 121 DPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 1 1122222222 3478999999999653
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=80.95 E-value=15 Score=37.76 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=39.5
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCC--CCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGG--CLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg--~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
.++.-+|++.|.++|||||.- | ....-.|... + .. .|+. -=+|.+|+...+++ -||++....
T Consensus 178 A~Ni~~Yi~tI~~lLkpgG~W-I---N~GPLlyh~~----~---~~-~~~~~sveLs~eEi~~l~~~-~GF~~~~~~ 241 (270)
T PF07942_consen 178 AENIIEYIETIEHLLKPGGYW-I---NFGPLLYHFE----P---MS-IPNEMSVELSLEEIKELIEK-LGFEIEKEE 241 (270)
T ss_pred hHHHHHHHHHHHHHhccCCEE-E---ecCCccccCC----C---CC-CCCCcccCCCHHHHHHHHHH-CCCEEEEEE
Confidence 357899999999999999943 2 2222222211 0 00 0111 22689999999999 599997654
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=80.89 E-value=1.9 Score=43.29 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=31.6
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVK 435 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~ 435 (525)
..+||||| +..++++ +.+|+++|+++++++.++++..
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~~~~l~~~~~ 72 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRLAEILRKLLS 72 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHHHHHHHHHhC
Confidence 45999999 6777775 6789999999999999998864
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=80.79 E-value=3.1 Score=38.58 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=19.0
Q ss_pred cEEEEeCCCceEeCCEEEEec
Q 043102 112 SCTVVCGDGSREFYNSCVMAL 132 (525)
Q Consensus 112 gv~v~~~~g~~e~fD~VV~A~ 132 (525)
|+.|.+.+|....||+|||||
T Consensus 133 ~~~v~~~~g~~~~~d~VvLa~ 153 (156)
T PF13454_consen 133 GYRVVTADGQSIRADAVVLAT 153 (156)
T ss_pred cEEEEECCCCEEEeCEEEECC
Confidence 578888999889999999997
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=80.59 E-value=1.3 Score=45.07 Aligned_cols=62 Identities=15% Similarity=0.049 Sum_probs=39.5
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
+.|...++.+.++|||||.+++..+... ..|. +...-||.-. .+.+.+.++++++ |+.|.-.
T Consensus 176 ~~y~~al~ni~~lLkpGG~Lil~~~l~~-t~Y~--------vG~~~F~~l~-l~ee~v~~al~~a-G~~i~~~ 237 (256)
T PF01234_consen 176 DEYRRALRNISSLLKPGGHLILAGVLGS-TYYM--------VGGHKFPCLP-LNEEFVREALEEA-GFDIEDL 237 (256)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEEEESS--SEEE--------ETTEEEE----B-HHHHHHHHHHT-TEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEcCc-eeEE--------ECCEeccccc-CCHHHHHHHHHHc-CCEEEec
Confidence 4577779999999999999999776432 2221 1112244322 3567788889985 9988754
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 525 | ||||
| 1kp9_A | 287 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 8e-08 | ||
| 1kpi_A | 302 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 2e-07 | ||
| 1kpg_A | 287 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 2e-07 | ||
| 1tpy_A | 287 | Structure Of The Cyclopropane Synthase Mmaa2 From M | 1e-06 | ||
| 1l1e_A | 287 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 1e-06 | ||
| 2fk7_A | 318 | Crystal Structure Of Hma (Mmaa4) From Mycobacterium | 8e-05 |
| >pdb|1KP9|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa1, Apo-Form Length = 287 | Back alignment and structure |
|
| >pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa2 Complexed With Sah And Dddmab Length = 302 | Back alignment and structure |
|
| >pdb|1KPG|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa1 Complexed With Sah And Ctab Length = 287 | Back alignment and structure |
|
| >pdb|1TPY|A Chain A, Structure Of The Cyclopropane Synthase Mmaa2 From Mycobacterium Tuberculosis Length = 287 | Back alignment and structure |
|
| >pdb|1L1E|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Pcaa Complexed With S-Adenosyl-L-Homocysteine Length = 287 | Back alignment and structure |
|
| >pdb|2FK7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium Tuberculosis, Apo- Form Length = 318 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Length = 318 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 7e-43
Identities = 54/253 (21%), Positives = 76/253 (30%), Gaps = 72/253 (28%)
Query: 324 LDSSVSRLNQKRGWWSPILFTAGFASAKYFFRHISRTNTLTQACRHISRHYDLSNELFCL 383
+ SS + G + I HYD+S++ F L
Sbjct: 1 MGSSHYHHHHSSGLVPRGS---------HMAEKPISPTKTRTRFEDIQAHYDVSDDFFAL 51
Query: 384 FLDESLTYSCALF-------------KVREVI----------FL--GT------IEVVKR 412
F D + TYSCA F KV + L G V+R
Sbjct: 52 FQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVER 111
Query: 413 TGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR--S------FGHE 449
G+TL++ Q + D R+ DR S FGHE
Sbjct: 112 FDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHFGHE 171
Query: 450 YMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRL---------SSDFMKEYIFPGGCL 500
++FF C +++ DG +Q R F+ IFPGG L
Sbjct: 172 NYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRL 231
Query: 501 PSLSRITSAMSAA 513
PS + A
Sbjct: 232 PSTEMMVEHGEKA 244
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Length = 287 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 2e-40
Identities = 53/216 (24%), Positives = 80/216 (37%), Gaps = 63/216 (29%)
Query: 361 NTLTQACRHISRHYDLSNELFCLFLDESLTYSCALF-------------KVREVI----- 402
+ L ++ HYDLS++ F LFLD + TYSCA F K+ +
Sbjct: 3 DELKPHFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGL 62
Query: 403 -----FL------GT--IEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------- 442
L G + V++ G+TL++ Q + V ++ R+
Sbjct: 63 QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAG 122
Query: 443 --------DR--S------FGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERY------ 480
DR S FGHE + FF L+ DG+ +L I+ +
Sbjct: 123 WEQFDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGL 182
Query: 481 ---NEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAA 513
F F+ IFPGG LPS+ + SA
Sbjct: 183 PMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASAN 218
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A* Length = 302 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 5e-37
Identities = 55/229 (24%), Positives = 74/229 (32%), Gaps = 70/229 (30%)
Query: 355 RHISRTNTLTQACRHISRHYDLSNELFCLFLDESLTYSCALF-------------KVREV 401
+ L + HYD SNE F L+LD S+TYSCA F K +
Sbjct: 5 GDTTSGTQLKPPVEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLA 64
Query: 402 I----------FL------GT--IEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN- 442
+ L G+ V G+TL+E Q + E D R
Sbjct: 65 LDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRK 124
Query: 443 --------------DR---------------SFGHEYMEEFFGCCESLIAKDGLFVLQFI 473
DR G E + FF +L DG +L I
Sbjct: 125 EVRIQGWEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184
Query: 474 SIPDERYN---------EFRLSSDFMKEYIFPGGCLPSLSRITSAMSAA 513
+IPD+ F+ IFPGG LP +S++ S A
Sbjct: 185 TIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNA 233
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 3e-19
Identities = 23/217 (10%), Positives = 50/217 (23%), Gaps = 56/217 (25%)
Query: 350 AKYFFRHISRTNTLTQACRHISR-HYDLSNELFCLFLDESLTYSCALFK----------- 397
A+Y+ N + HY + D +
Sbjct: 46 ARYWNNEARPVNLRLGDVDGLYHHHYGIGPVDRAALGDPEHSEYEKKVIAELHRLESAQA 105
Query: 398 ---VREVIFLG---------------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEA-- 437
+ + G + +R G + G+TL+ Q + + +E
Sbjct: 106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRI 165
Query: 438 ------------DLERNDRSF---------GHEYMEEFFGCCESLIAKDGLFVLQFISIP 476
D + + + + + F + G +V
Sbjct: 166 DDHVRSRVCNMLDTPFDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWN 225
Query: 477 DERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAA 513
RY + + + + S AM+
Sbjct: 226 P-RYGQPSKWVSQINAHFECN--IHSRREYLRAMADN 259
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 3e-11
Identities = 24/201 (11%), Positives = 58/201 (28%), Gaps = 48/201 (23%)
Query: 355 RHISRTNTLTQACRHISRHYDLSNELFCLFLDESLTYSCALFKVREVIFL---------- 404
I N+ + +++ D +++ E+ S L ++++
Sbjct: 2 TLIENLNS-DKTFLENNQYTDEGVKVYEFIFGENYISSGGLEATKKILSDIELNENSKVL 60
Query: 405 --------GTIEVVKRTGCKYTGITLAEKQLKYAGIKVKEAD-----------LERNDRS 445
G + + ++ G GI + + A +V + E + +
Sbjct: 61 DIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENN 120
Query: 446 F------------GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEY 493
F E + F C + G ++ ++ D KEY
Sbjct: 121 FDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEK-----ENWDDEFKEY 175
Query: 494 IFPGG-CLPSLSRITSAMSAA 513
+ L ++ ++A
Sbjct: 176 VKQRKYTLITVEEYADILTAC 196
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 4e-09
Identities = 27/182 (14%), Positives = 47/182 (25%), Gaps = 43/182 (23%)
Query: 114 TVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAF---------------HD 158
+ D RE + V+ + L A DE
Sbjct: 237 HIHTTDWDRES-DVLVLTVPLEKFLDYSD--ADDDEREYFSKIIHQQYMVDACLVKEYPT 293
Query: 159 IFLHCDKNSMPQNPAAWSAWSFLGSLDSKNLGETSLPY-----------------LVTLN 201
I + N P+ + + D + T L L +
Sbjct: 294 ISGYVPDNMRPERLGHVMVYYHRWADDPHQIITTYLLRNHPDYADKTQEECRQMVLDDME 353
Query: 202 PDHAPEHTLLKWSTGPPVPFVAASKASLELGH------IQGRRGIWFRGAYQGYGFHEDG 255
P +++ T P V S + G +QGRR ++ G +G ++
Sbjct: 354 TFGHPVEKIIEEQTWYYFPHV--SSEDYKAGWYEKVEGMQGRRNTFYAGEIMSFGNFDEV 411
Query: 256 LK 257
Sbjct: 412 CH 413
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 1e-07
Identities = 11/131 (8%), Positives = 25/131 (19%), Gaps = 27/131 (20%)
Query: 406 TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR---- 444
+ G TGI ++ A + +E + D
Sbjct: 51 LCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACV 110
Query: 445 -SFGH-EYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPS 502
+ + G+ ++ E + +
Sbjct: 111 GATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEI----AQACGVSSTSDFLT 166
Query: 503 LSRITSAMSAA 513
L + A
Sbjct: 167 LPGLVGAFDDL 177
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 26/201 (12%), Positives = 51/201 (25%), Gaps = 60/201 (29%)
Query: 370 ISRHYDLSNELFCLFLDESLTYSCALF-------------KVREVI-FLG---------- 405
+ + YD + F E+L + E+I L
Sbjct: 9 VRQMYDDFTDPFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDV 68
Query: 406 -------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEA--------------DLERNDR 444
+ + + TGI+++ Q+ A + A DL D
Sbjct: 69 GCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDA 128
Query: 445 SFGHEYMEE----------FFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYI 494
SF + E ++ G + + + + + +
Sbjct: 129 SFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKK---EAVDAFR 185
Query: 495 FPGGC--LPSLSRITSAMSAA 513
GG L + S + A
Sbjct: 186 AGGGVLSLGGIDEYESDVRQA 206
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 5e-05
Identities = 62/380 (16%), Positives = 95/380 (25%), Gaps = 131/380 (34%)
Query: 143 NQATFDETRTGGAFHDIFLHCDKNSMPQ-----NPAAWS-----------AWSFLGSLDS 186
+ T +L C +P+ NP S W ++
Sbjct: 294 HSMTLTPDEVKSLLLK-YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 187 KNLGETSLPYLVTLNPDHA----------PEHTLLKWSTGPPVPFVAASKASLELGHIQG 236
L L L P P +P L L
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA--------HIP-----TILLSL----- 394
Query: 237 RRGIWFRGAYQGYGFHEDGLKDLSINSCMTYGEECFFPGRHDRGACLLEEGGTMFTFEGT 296
IWF D+ + M + H L+E+ T
Sbjct: 395 ---IWF---------------DVIKSDVMVVVNKL-----HKY--SLVEKQPKESTI--- 426
Query: 297 RKNNHLKTVLRIHSPQFYWKILIANR-DL-DSSVSRLNQKRGW--WSPILFTAGFASAKY 352
I S K+ + N L S V N + + I +Y
Sbjct: 427 ----------SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD----QY 472
Query: 353 FFRHISRTNTLTQACRHIS--RHYDLSNELFCLFLDESLTYSCALFKVREVIFLG-TIEV 409
F+ HI H+ H + +FLD F+ FL I
Sbjct: 473 FYSHIG---------HHLKNIEHPERMTLFRMVFLD---------FR-----FLEQKIRH 509
Query: 410 VKRTGCKYTGITLAEKQLK-YAG-IKVKEADLER--NDRSFGHEYMEEF-FGCCESLIAK 464
I +QLK Y I + ER N + +F E+LI
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA-------ILDFLPKIEENLICS 562
Query: 465 DGLFVLQFISIPDER--YNE 482
+L+ + ++ + E
Sbjct: 563 KYTDLLRIALMAEDEAIFEE 582
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 5e-04
Identities = 17/131 (12%), Positives = 33/131 (25%), Gaps = 28/131 (21%)
Query: 407 IEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN--------------DRSFGHEYME 452
+V++ G + +A Q K +A L N D S+ + +
Sbjct: 98 RFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQ 157
Query: 453 E----------FFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPS 502
+ F C ++ G+ + D + + S
Sbjct: 158 DAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSI--QPILDRIKLHD--MGS 213
Query: 503 LSRITSAMSAA 513
L S
Sbjct: 214 LGLYRSLAKEC 224
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 39.5 bits (91), Expect = 6e-04
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 21/45 (46%)
Query: 187 KNLGETSL-PYLVTLNPDHAPEHTLLKWSTGPPVPFVAASKASLE 230
K L + SL Y D AP L A KA++E
Sbjct: 23 KKL-QASLKLY----ADDSAP--AL-------------AIKATME 47
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 525 | |||
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.9 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.87 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.86 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.62 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.55 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 99.54 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.46 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 99.33 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.25 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 99.25 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 98.99 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 98.99 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 98.98 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 98.98 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.95 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 98.94 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 98.93 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 98.91 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 98.87 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 98.85 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 98.84 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 98.82 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 98.81 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 98.77 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 98.73 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 98.72 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 98.72 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 98.69 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 98.68 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 98.68 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 98.67 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 98.66 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 98.66 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 98.64 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 98.64 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 98.62 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 98.62 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.61 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 98.61 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 98.59 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.58 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 98.58 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 98.58 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.57 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 98.57 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 98.57 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 98.57 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 98.55 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.55 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 98.55 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.54 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 98.54 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.53 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 98.52 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 98.51 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 98.5 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.5 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 98.49 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 98.49 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 98.49 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.49 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.49 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 98.48 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 98.46 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.46 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.45 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 98.43 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 98.43 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.43 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.43 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 98.42 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 98.42 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 98.42 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 98.41 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 98.41 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.41 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 98.4 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 98.4 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 98.4 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.4 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 98.39 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 98.38 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 98.37 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.37 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.36 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 98.36 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 98.35 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.35 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.33 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 98.33 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 98.32 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 98.31 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 98.28 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.27 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 98.27 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 98.24 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.24 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.23 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 98.23 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.23 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 98.23 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.22 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.22 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 98.21 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 98.21 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.21 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 98.2 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 98.17 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 98.17 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 98.16 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.16 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.16 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 98.15 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 98.14 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 98.14 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 98.14 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 98.13 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 98.13 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.13 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 98.13 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.11 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.09 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.09 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 98.09 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.08 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 98.08 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 98.08 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 98.05 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.05 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.04 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.04 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.03 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 97.98 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 97.98 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 97.98 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 97.98 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 97.96 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 97.95 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 97.95 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 97.94 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 97.93 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 97.93 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 97.93 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 97.93 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 97.93 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 97.93 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 97.92 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 97.91 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 97.9 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 97.9 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 97.88 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 97.87 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 97.86 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 97.86 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 97.86 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 97.86 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 97.84 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 97.82 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 97.81 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 97.8 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 97.79 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 97.79 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 97.78 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 97.77 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 97.77 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 97.76 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 97.75 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 97.75 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 97.72 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 97.72 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.72 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 97.72 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 97.68 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 97.68 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 97.67 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 97.66 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 97.65 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 97.65 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 97.64 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 97.64 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 97.64 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 97.64 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 97.63 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 97.62 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 97.62 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 97.62 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 97.59 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 97.58 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 97.55 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 97.55 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 97.54 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 97.54 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 97.54 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 97.54 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 97.54 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 97.53 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 97.53 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 97.53 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 97.51 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 97.51 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 97.5 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 97.5 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 97.5 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 97.49 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 97.49 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 97.48 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 97.47 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 97.46 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 97.46 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 97.44 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 97.44 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 97.43 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 97.43 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 97.42 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 97.39 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 97.39 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 97.39 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 97.38 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 97.38 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.38 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 97.38 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 97.36 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 97.35 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 97.35 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 97.34 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 97.34 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 97.34 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 97.31 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 97.29 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 97.27 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 97.26 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 97.21 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 97.14 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 97.12 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 97.11 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.07 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 97.07 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 97.06 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 97.06 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 97.04 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 97.0 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 96.96 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 96.94 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 96.89 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 96.76 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 96.72 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 96.71 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 96.67 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 96.65 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 96.56 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 96.22 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 96.2 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 96.2 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 96.15 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 96.13 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 96.06 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 96.02 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 95.9 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 95.88 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 95.84 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 95.82 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 95.82 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 95.81 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 95.77 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 95.54 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 95.54 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 95.31 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 95.31 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 95.27 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 95.18 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 95.12 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 95.07 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 94.75 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 94.61 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 94.49 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 94.46 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 94.27 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 94.22 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 94.2 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 94.11 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 94.11 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 94.11 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 94.05 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 94.01 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 93.8 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 93.67 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 93.49 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 93.47 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 93.47 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 93.24 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 93.17 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 93.13 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 92.91 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 92.73 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 92.19 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 91.98 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 91.39 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 91.38 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 91.05 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 90.75 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 90.57 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 90.28 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 88.71 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 88.35 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 88.29 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 87.98 | |
| 2e1m_C | 181 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 87.34 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 86.6 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 86.45 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 85.21 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 84.83 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 83.72 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 83.41 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 83.01 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 81.66 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 81.62 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 81.09 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 80.65 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 80.08 |
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-23 Score=208.93 Aligned_cols=161 Identities=34% Similarity=0.483 Sum_probs=138.2
Q ss_pred CchhHHHHhhhcccccchHHHHhccccccchhccccCCC-------------------------eehhhc------HHHH
Q 043102 361 NTLTQACRHISRHYDLSNELFCLFLDESLTYSCALFKVR-------------------------EVIFLG------TIEV 409 (525)
Q Consensus 361 N~~~~s~~nIa~hYDl~nd~y~l~Ld~~m~ys~a~f~~~-------------------------rVLDIG------a~~l 409 (525)
..++..+++|++|||++|+||++|+|++|.|+|++|..+ +||||| ++.+
T Consensus 11 ~~~~~~~~~i~~~Yd~~~~~y~~~l~~~~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l 90 (302)
T 3hem_A 11 TQLKPPVEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHA 90 (302)
T ss_dssp -CCCCCHHHHHHHHTSCHHHHHHHSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHH
T ss_pred ccccchHHHHHHhcCCCHHHHHHhcCCCCceeeEEecCCCCCHHHHHHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHH
Confidence 345677899999999999999999999999999999742 899999 7888
Q ss_pred HHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc--------cc-------CcccHHHHHHHHH
Q 043102 410 VKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR--------SF-------GHEYMEEFFGCCE 459 (525)
Q Consensus 410 A~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~--------~v-------g~~~~~~~f~~i~ 459 (525)
++++|++|+|||+|++|++.|+++++..|+.++ |. |+ |.+++..+++++.
T Consensus 91 a~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~ 170 (302)
T 3hem_A 91 VAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFY 170 (302)
T ss_dssp HHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHH
T ss_pred HHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCccEEEEcchHHhcCccccccchhHHHHHHHHHH
Confidence 887789999999999999999999999887654 33 55 6678899999999
Q ss_pred hccCCCcEEEEEEecCCCcchhcccCc---------hhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 460 SLIAKDGLFVLQFISIPDERYNEFRLS---------SDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 460 r~LkpGG~~viq~i~~~~~~~~~~~~~---------~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
++|||||++++++++.++......... .+|+.+|+|||+.+|+++++.+.++++ ||++.-..
T Consensus 171 ~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~~~~~l~~a-Gf~~~~~~ 241 (302)
T 3hem_A 171 NLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNA-GWKVERYH 241 (302)
T ss_dssp HSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHHH-TCEEEEEE
T ss_pred HhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCCCCCHHHHHHHHHhC-CcEEEEEE
Confidence 999999999999999876543322222 389999999999999999999999996 99987654
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-22 Score=198.23 Aligned_cols=160 Identities=31% Similarity=0.522 Sum_probs=135.8
Q ss_pred chhHHHHhhhcccccchHHHHhccccccchhccccCCC-------------------------eehhhc------HHHHH
Q 043102 362 TLTQACRHISRHYDLSNELFCLFLDESLTYSCALFKVR-------------------------EVIFLG------TIEVV 410 (525)
Q Consensus 362 ~~~~s~~nIa~hYDl~nd~y~l~Ld~~m~ys~a~f~~~-------------------------rVLDIG------a~~lA 410 (525)
+.++++++|++|||++|+||+.|+|+.|.|+|++|+.+ +||||| ++.++
T Consensus 4 ~~~~~~~~i~~~Yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~ 83 (287)
T 1kpg_A 4 ELKPHFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAV 83 (287)
T ss_dssp CSCCCHHHHHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHH
T ss_pred cccccHHHHHHhcCCCHHHHHHhcCCCCCcceEEecCCCCCHHHHHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHH
Confidence 45678899999999999999999999999999999632 999999 77888
Q ss_pred HhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc--------ccCcccHHHHHHHHHhccCCCcE
Q 043102 411 KRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR--------SFGHEYMEEFFGCCESLIAKDGL 467 (525)
Q Consensus 411 ~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~--------~vg~~~~~~~f~~i~r~LkpGG~ 467 (525)
+++|++|+|||+|++|++.|++++++.|+.++ |. |++.+++..+++++.++|||||+
T Consensus 84 ~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 163 (287)
T 1kpg_A 84 EKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGV 163 (287)
T ss_dssp HHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCE
T ss_pred HHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCE
Confidence 76799999999999999999999988776543 33 55667899999999999999999
Q ss_pred EEEEEecCCCcchh---------cccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 468 FVLQFISIPDERYN---------EFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 468 ~viq~i~~~~~~~~---------~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
+++++++..+.... ......+|+.+|+||++.+|+++++.+.++++ ||+++-..
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~a-Gf~~~~~~ 226 (287)
T 1kpg_A 164 MLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASAN-GFTVTRVQ 226 (287)
T ss_dssp EEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTT-TCEEEEEE
T ss_pred EEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHHHHHhC-CcEEEEEE
Confidence 99999887654321 11234678999999999999999999999995 99987654
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=196.81 Aligned_cols=161 Identities=29% Similarity=0.435 Sum_probs=128.0
Q ss_pred ccCchhHHHHhhhcccccchHHHHhccccccchhccccCCC-------------------------eehhhc------HH
Q 043102 359 RTNTLTQACRHISRHYDLSNELFCLFLDESLTYSCALFKVR-------------------------EVIFLG------TI 407 (525)
Q Consensus 359 ~~N~~~~s~~nIa~hYDl~nd~y~l~Ld~~m~ys~a~f~~~-------------------------rVLDIG------a~ 407 (525)
+.|+...++++|++|||++++||+.|+|+.+.|++++|+.+ +||||| +.
T Consensus 27 ~~~~~~~~~~~i~~~Yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~ 106 (318)
T 2fk8_A 27 SPTKTRTRFEDIQAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMR 106 (318)
T ss_dssp -----------CGGGGCCCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHH
T ss_pred ccCChhhhHHHHHHhcCCCHHHHHHHcCCCCCcceeeeCCCCCCHHHHHHHHHHHHHHhcCCCCcCEEEEEcccchHHHH
Confidence 88999999999999999999999999999999999998632 999999 77
Q ss_pred HHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc--------ccCcccHHHHHHHHHhccCC
Q 043102 408 EVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR--------SFGHEYMEEFFGCCESLIAK 464 (525)
Q Consensus 408 ~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~--------~vg~~~~~~~f~~i~r~Lkp 464 (525)
.+++++|++|+|||+|++|++.|++++++.|+.++ |. |++.++...+++++.++|||
T Consensus 107 ~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp 186 (318)
T 2fk8_A 107 RAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPA 186 (318)
T ss_dssp HHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCT
T ss_pred HHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCC
Confidence 88876799999999999999999999998887643 33 45667899999999999999
Q ss_pred CcEEEEEEecCCCcchhcc---------cCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 465 DGLFVLQFISIPDERYNEF---------RLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 465 GG~~viq~i~~~~~~~~~~---------~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
||+++++++...+...... ....+|+.+|+||++.+|+.+++.+.++++ ||+++-
T Consensus 187 gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~a-Gf~~~~ 250 (318)
T 2fk8_A 187 DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKA-GFTVPE 250 (318)
T ss_dssp TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHT-TCBCCC
T ss_pred CcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHHHHHHhC-CCEEEE
Confidence 9999999998776432111 123488999999999999999999999995 998754
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-15 Score=149.18 Aligned_cols=154 Identities=14% Similarity=0.145 Sum_probs=101.5
Q ss_pred HHHHhhhcccccchHHHHhccccccchhccccCCC---------------------------eehhhc------HHHHHH
Q 043102 365 QACRHISRHYDLSNELFCLFLDESLTYSCALFKVR---------------------------EVIFLG------TIEVVK 411 (525)
Q Consensus 365 ~s~~nIa~hYDl~nd~y~l~Ld~~m~ys~a~f~~~---------------------------rVLDIG------a~~lA~ 411 (525)
.+.+++++|||..+++|..++++.++ ++||++. +||||| +..+++
T Consensus 4 p~~~~~~~~Yd~~~~~y~~~~~~~~~--~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~ 81 (273)
T 3bus_A 4 PTPEEVRQMYDDFTDPFARIWGENLH--FGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLAT 81 (273)
T ss_dssp -------------------CCGGGCC--CCCCCCSSCCCCHHHHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHH
T ss_pred CcHHHHHHHHcchHHHHHHHcCCCce--EEecCCCccccCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHH
Confidence 45778999999999999999999764 5777431 999999 778888
Q ss_pred hcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc----c-c-CcccHHHHHHHHHhccCCCcE
Q 043102 412 RTGCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR----S-F-GHEYMEEFFGCCESLIAKDGL 467 (525)
Q Consensus 412 ~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~----~-v-g~~~~~~~f~~i~r~LkpGG~ 467 (525)
+.+++|+|+|+|++|++.|+++++..|+.++ |. . + ...+...+++++.++|||||+
T Consensus 82 ~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~ 161 (273)
T 3bus_A 82 ARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGT 161 (273)
T ss_dssp HSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEE
T ss_pred hcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeE
Confidence 7799999999999999999999998887644 22 0 1 134678999999999999999
Q ss_pred EEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 468 FVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 468 ~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
+++.++..............+.+. ..+|+..+++.+++.+.++++ ||+++-..
T Consensus 162 l~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~a-Gf~~~~~~ 214 (273)
T 3bus_A 162 VAIADFVLLAPVEGAKKEAVDAFR-AGGGVLSLGGIDEYESDVRQA-ELVVTSTV 214 (273)
T ss_dssp EEEEEEEESSCCCHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHHHT-TCEEEEEE
T ss_pred EEEEEeeccCCCChhHHHHHHHHH-hhcCccCCCCHHHHHHHHHHc-CCeEEEEE
Confidence 999988765432211111111111 347888999999999999995 99987543
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.7e-15 Score=149.73 Aligned_cols=160 Identities=15% Similarity=0.150 Sum_probs=124.5
Q ss_pred ccCchhHHHHhh-hcccccchHHHHhccccc-cchhccccC----------------------CCeehhhc------HHH
Q 043102 359 RTNTLTQACRHI-SRHYDLSNELFCLFLDES-LTYSCALFK----------------------VREVIFLG------TIE 408 (525)
Q Consensus 359 ~~N~~~~s~~nI-a~hYDl~nd~y~l~Ld~~-m~ys~a~f~----------------------~~rVLDIG------a~~ 408 (525)
+.|.+.++++++ ++|||++++++..+.++. +.|+.++|. ..+||||| +..
T Consensus 55 ~~~~~~g~~~~i~~~~y~~~~~~~~~~~~~~~~~y~~~~f~~~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~ 134 (312)
T 3vc1_A 55 PVNLRLGDVDGLYHHHYGIGPVDRAALGDPEHSEYEKKVIAELHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVM 134 (312)
T ss_dssp HHHHHHHTTTTCCCCSCCCSCCCHHHHCCTTSTTHHHHHHHHHHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHH
T ss_pred cchhhcccccchhhhhcCCchhHHHhhcCCCccccchHHHhhhhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHH
Confidence 346677788898 899999999999999988 888766552 23999999 778
Q ss_pred HHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc-----ccCcccHHHHHHHHHhccCCC
Q 043102 409 VVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR-----SFGHEYMEEFFGCCESLIAKD 465 (525)
Q Consensus 409 lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~-----~vg~~~~~~~f~~i~r~LkpG 465 (525)
++++.|++|+|||+|+++++.|+++++..|+.++ |. .+..-+...+++++.++||||
T Consensus 135 la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~Lkpg 214 (312)
T 3vc1_A 135 AHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVG 214 (312)
T ss_dssp HHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHEEEE
T ss_pred HHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCchhhCCHHHHHHHHHHHcCCC
Confidence 8876799999999999999999999999887644 22 011124899999999999999
Q ss_pred cEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 466 GLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 466 G~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
|++++.+....+. +........++.++.+|+ +++.+++.+.++++ ||+++-..
T Consensus 215 G~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~s~~~~~~~l~~a-Gf~~~~~~ 267 (312)
T 3vc1_A 215 GRYVTITGCWNPR-YGQPSKWVSQINAHFECN--IHSRREYLRAMADN-RLVPHTIV 267 (312)
T ss_dssp EEEEEEEEEECTT-TCSCCHHHHHHHHHHTCC--CCBHHHHHHHHHTT-TEEEEEEE
T ss_pred cEEEEEEcccccc-ccchhHHHHHHHhhhcCC--CCCHHHHHHHHHHC-CCEEEEEE
Confidence 9999988765542 222233456676666653 89999999999995 99987654
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.6e-15 Score=154.61 Aligned_cols=150 Identities=15% Similarity=0.110 Sum_probs=102.7
Q ss_pred cEEEEeCCCceEeCCEEEEecChHHHHHhhcCCCCHHHHhhccCCceeEeccCCCC----------CCCC----CCCccc
Q 043102 112 SCTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFHDIFLHCDKNS----------MPQN----PAAWSA 177 (525)
Q Consensus 112 gv~v~~~~g~~e~fD~VV~A~hadqAL~lL~~~~t~~E~~iLg~f~~~vlHtD~s~----------mP~~----~~aWas 177 (525)
+|.|.+.+|. ..+|+||+|+++.+++++|. +++.|+++|+.++..-+|++..+ +|++ ...|..
T Consensus 235 ~v~v~~~~g~-~~ad~Vv~a~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 311 (424)
T 2b9w_A 235 KVHIHTTDWD-RESDVLVLTVPLEKFLDYSD--ADDDEREYFSKIIHQQYMVDACLVKEYPTISGYVPDNMRPERLGHVM 311 (424)
T ss_dssp CEEEEESSCE-EEESEEEECSCHHHHTTSBC--CCHHHHHHHTTCEEEEEEEEEEEESSCCSSEEECGGGGSGGGTTSCC
T ss_pred EEEEEECCCe-EEcCEEEECCCHHHHhhccC--CCHHHHHHHhcCCcceeEEEEEEeccCCcccccccCCCCCcCCCcce
Confidence 5778888774 78999999999999999985 67888889998881112222222 2432 234556
Q ss_pred cccccCCC-CC---------C---CCCCCCCe--------EEEcCCCCCCcceee--EEEecCCCCCHHHHHH--HHHhh
Q 043102 178 WSFLGSLD-SK---------N---LGETSLPY--------LVTLNPDHAPEHTLL--KWSTGPPVPFVAASKA--SLELG 232 (525)
Q Consensus 178 wNy~~~~~-~~---------n---l~~~~~~~--------fvTLNp~~~p~~il~--~~~y~HPv~~~~a~~a--q~~l~ 232 (525)
||+....+ .. + +...+.+. ++++|+. +.+++. .|. .||.+..+..++ ++++.
T Consensus 312 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~~~--~~~~~~~~~w~-~~p~~~~~~~~~G~~~~~~ 388 (424)
T 2b9w_A 312 VYYHRWADDPHQIITTYLLRNHPDYADKTQEECRQMVLDDMETFGHP--VEKIIEEQTWY-YFPHVSSEDYKAGWYEKVE 388 (424)
T ss_dssp EEEECCTTCTTSCEEEEEECCBTTBCCCCHHHHHHHHHHHHHHTTCC--EEEEEEEEEEE-EEEECCHHHHHTTHHHHHH
T ss_pred EEeeecCCCCceEEEEEeccCCCcccccChHHHHHHHHHHHHHcCCc--cccccccccee-eeeccCHHHHhccHHHHHH
Confidence 65543221 11 0 11000011 2344432 223333 454 499999888877 88999
Q ss_pred hhcCCCCeEEeccCCCCCCchhhhchHHHHHhhhc
Q 043102 233 HIQGRRGIWFRGAYQGYGFHEDGLKDLSINSCMTY 267 (525)
Q Consensus 233 ~iqG~~~~~fcGay~g~GfHEdg~~Sgl~aA~~ll 267 (525)
.+||.+++||||+|+++||||+|+.||++||+.+|
T Consensus 389 ~~~~~~~l~~aG~~~~~g~~e~a~~Sg~~aA~~~l 423 (424)
T 2b9w_A 389 GMQGRRNTFYAGEIMSFGNFDEVCHYSKDLVTRFF 423 (424)
T ss_dssp HTTTGGGEEECSGGGSCSSHHHHHHHHHHHHHHHT
T ss_pred HHhCCCCceEeccccccccHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999884
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.1e-13 Score=134.47 Aligned_cols=155 Identities=16% Similarity=0.129 Sum_probs=115.4
Q ss_pred CchhHHHHhhhcccccc--hHHHH-hccccccchhccccC-------------------------------CCeehhhc-
Q 043102 361 NTLTQACRHISRHYDLS--NELFC-LFLDESLTYSCALFK-------------------------------VREVIFLG- 405 (525)
Q Consensus 361 N~~~~s~~nIa~hYDl~--nd~y~-l~Ld~~m~ys~a~f~-------------------------------~~rVLDIG- 405 (525)
++...++++++.|||.. ++||+ +|.|+.+++ ++|+ ..+|||||
T Consensus 14 ~~~~~~~~~~~~~Yd~~~~~~~y~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vLDiGc 91 (297)
T 2o57_A 14 ATSKTVKDNAEIYYDDDDSDRFYFHVWGGEDIHV--GLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGA 91 (297)
T ss_dssp --CHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCS--CCCCSSGGGSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETC
T ss_pred hhHHHHHHHHHHHcCCccchhHHHHHhCCCceEE--EecCCCCCCcchHHHHHHHHHHHHHHhhhccCCCCCCEEEEeCC
Confidence 56677889999999997 49996 555666643 4442 23999999
Q ss_pred -----HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc----cc--CcccHHHHHH
Q 043102 406 -----TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR----SF--GHEYMEEFFG 456 (525)
Q Consensus 406 -----a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~----~v--g~~~~~~~f~ 456 (525)
+..+++++|++|+|||+|++|++.|+++++..|+.++ |. .+ ...+...+++
T Consensus 92 G~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~ 171 (297)
T 2o57_A 92 GYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQ 171 (297)
T ss_dssp TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHHHHH
T ss_pred CCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchhhhcCCHHHHHH
Confidence 7788877799999999999999999999988777543 22 00 1245789999
Q ss_pred HHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 457 CCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 457 ~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
++.++|||||++++.++...+.... .....+...+.+| .+++..++.+.++++ ||+++-..
T Consensus 172 ~~~~~LkpgG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~l~~a-Gf~~~~~~ 232 (297)
T 2o57_A 172 ECARVLKPRGVMAITDPMKEDGIDK--SSIQPILDRIKLH--DMGSLGLYRSLAKEC-GLVTLRTF 232 (297)
T ss_dssp HHHHHEEEEEEEEEEEEEECTTCCG--GGGHHHHHHHTCS--SCCCHHHHHHHHHHT-TEEEEEEE
T ss_pred HHHHHcCCCeEEEEEEeccCCCCch--HHHHHHHHHhcCC--CCCCHHHHHHHHHHC-CCeEEEEE
Confidence 9999999999999998876543211 1234566666665 468999999999995 99987654
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=99.33 E-value=6.5e-13 Score=137.77 Aligned_cols=127 Identities=9% Similarity=-0.087 Sum_probs=91.2
Q ss_pred EeCCEEEEecChHHHHHhhcCCCCHHHHhhccCCc----eeEecc-CCCCCCCCCCCccccccccCCC-C-------CCC
Q 043102 123 EFYNSCVMALHAPDALKILGNQATFDETRTGGAFH----DIFLHC-DKNSMPQNPAAWSAWSFLGSLD-S-------KNL 189 (525)
Q Consensus 123 e~fD~VV~A~hadqAL~lL~~~~t~~E~~iLg~f~----~~vlHt-D~s~mP~~~~aWaswNy~~~~~-~-------~nl 189 (525)
+.||+||+|+|+|+++++ .|+.++ .+++|. |.+.||. . +|+|..+.+ . +|+
T Consensus 222 ~~~D~VV~a~p~~~~~~~-----------~l~~l~y~s~~~v~~~~d~~~~~~--~---~~~~~~~~~~~~~ri~~~~~~ 285 (367)
T 1i8t_A 222 SKAHRIIYTGPIDQYFDY-----------RFGALEYRSLKFETERHEFPNFQG--N---AVINFTDANVPYTRIIEHKHF 285 (367)
T ss_dssp TTEEEEEECSCHHHHTTT-----------TTCCCCEEEEEEEEEEESSSCSSS--S---SEEEECCTTSSCSEEEEGGGG
T ss_pred ccCCEEEEeccHHHHHHH-----------hhCCCCCceEEEEEEEeccccCCC--C---eEEEeCCCCCceeeEEeeccc
Confidence 359999999999998765 477888 667675 9888884 2 444443221 1 022
Q ss_pred C-CCCCCeEEEcCCCCCCcceeeEEEecCCCCCHHHHHHHHHhhh-hcCCCCeEEeccC--CCCCCchhhhchHHHHHhh
Q 043102 190 G-ETSLPYLVTLNPDHAPEHTLLKWSTGPPVPFVAASKASLELGH-IQGRRGIWFRGAY--QGYGFHEDGLKDLSINSCM 265 (525)
Q Consensus 190 ~-~~~~~~fvTLNp~~~p~~il~~~~y~HPv~~~~a~~aq~~l~~-iqG~~~~~fcGay--~g~GfHEdg~~Sgl~aA~~ 265 (525)
. ......+||+|......+ +..+.||+++.+..++|+++.+ +|+.++|||||+| ++|++||||+.||+++|+.
T Consensus 286 ~~~~~~~~~v~~e~~~~~~~---~~~p~ypv~~~~~~~~~~~~~~~~~~~~~~~~~Gr~~~~~y~~~~d~i~sa~~~a~~ 362 (367)
T 1i8t_A 286 DYVETKHTVVTKEYPLEWKV---GDEPYYPVNDNKNMELFKKYRELASREDKVIFGGRLAEYKYYDMHQVISAALYQVKN 362 (367)
T ss_dssp SCCCCSCEEEEEEEEEECCT---TSCCCEECCSHHHHHHHHHHHHHHHHCTTEEECSTTTTTSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEEecccCC---CCeeecccCChhHHHHHHHHHHHHhcCCCEEEcccceeeEecCHHHHHHHHHHHHHH
Confidence 1 111235555554321111 2346799999999999999987 7999999999998 8899999999999999999
Q ss_pred hcC
Q 043102 266 TYG 268 (525)
Q Consensus 266 llG 268 (525)
++.
T Consensus 363 ~~~ 365 (367)
T 1i8t_A 363 IMS 365 (367)
T ss_dssp HHS
T ss_pred Hhc
Confidence 854
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.2e-12 Score=127.71 Aligned_cols=109 Identities=15% Similarity=0.152 Sum_probs=82.2
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCC-------CC--------C-Cc--------cc
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADL-------ER--------N-DR--------SF 446 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl-------~d--------~-D~--------~v 446 (525)
+..+||||| ++.+|++ |++|+|||+|++|++.|+++++...+ .. . |. |+
T Consensus 45 ~g~~VLDlGcGtG~~a~~La~~-g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~ 123 (261)
T 3iv6_A 45 PGSTVAVIGASTRFLIEKALER-GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLNDRLINRF 123 (261)
T ss_dssp TTCEEEEECTTCHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCGGGS
T ss_pred CcCEEEEEeCcchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEEhhhhHhC
Confidence 345999999 7888875 99999999999999999999754311 11 1 44 34
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEecCC-----------------------CcchhcccCchhHHhhcccCCCCCCCH
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFISIP-----------------------DERYNEFRLSSDFMKEYIFPGGCLPSL 503 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~~~-----------------------~~~~~~~~~~~~fi~kYIFPGg~LPsl 503 (525)
..++...+++++.++| |||+++++..... .+....+....+||+|||||||.||++
T Consensus 124 ~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~~~~d~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~p~g~~~~~ 202 (261)
T 3iv6_A 124 TTEEARRACLGMLSLV-GSGTVRASVKLGFYDIDLKLIEYGEQSGTLAKFFDPSDKTFHFREAGDVLDRALVPHGLIDKP 202 (261)
T ss_dssp CHHHHHHHHHHHHHHH-TTSEEEEEEEBSCCHHHHHHHHHHHTTTCHHHHEETTTTEEEGGGTTHHHHHHCCCCTTCCHH
T ss_pred CHHHHHHHHHHHHHhC-cCcEEEEEeccCcccccHHHHHHHHhcCCeeeeecCcccceehhhhhhHHHhccCCCCcccHH
Confidence 5567888999999999 9999999754311 011112345689999999999999998
Q ss_pred HHHH
Q 043102 504 SRIT 507 (525)
Q Consensus 504 ~~i~ 507 (525)
+.+-
T Consensus 203 ~~~~ 206 (261)
T 3iv6_A 203 TLLE 206 (261)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.9e-12 Score=133.83 Aligned_cols=137 Identities=9% Similarity=-0.077 Sum_probs=91.4
Q ss_pred cEEEEeCCCce----EeCCEEEEecChHHHHHhhcCCCCHHHHhhccCCc----eeEecc-CCCCCCCCCCCcccc-ccc
Q 043102 112 SCTVVCGDGSR----EFYNSCVMALHAPDALKILGNQATFDETRTGGAFH----DIFLHC-DKNSMPQNPAAWSAW-SFL 181 (525)
Q Consensus 112 gv~v~~~~g~~----e~fD~VV~A~hadqAL~lL~~~~t~~E~~iLg~f~----~~vlHt-D~s~mP~~~~aWasw-Ny~ 181 (525)
|+.|.+...-. ..||+||+|+|+|+++++ +|++++ .++.|. |+++++ ++| ||.
T Consensus 210 g~~I~l~~~V~~~i~~~~d~VI~a~p~~~~~~~-----------~lg~l~y~s~~~v~~~~d~~~~~------~~~~n~~ 272 (384)
T 2bi7_A 210 NIKVDLQREFIVEERTHYDHVFYSGPLDAFYGY-----------QYGRLGYRTLDFKKFTYQGDYQG------CAVMNYC 272 (384)
T ss_dssp TEEEEESCCCCGGGGGGSSEEEECSCHHHHTTT-----------TTCCCCEEEEEEEEEEEESCSSS------SSEEEEC
T ss_pred CCEEEECCeeehhhhccCCEEEEcCCHHHHHHh-----------hcCCCCcceEEEEEEEeCCCCCC------CEEEEec
Confidence 45666543211 239999999999999987 477888 444444 754432 556 886
Q ss_pred cCCCC-C------CCC-CC-CCCeEEEcCCCCCCcceeeEEEecCCCCCHHHHHHHHHhhhhcCC-CCeEEeccC--CCC
Q 043102 182 GSLDS-K------NLG-ET-SLPYLVTLNPDHAPEHTLLKWSTGPPVPFVAASKASLELGHIQGR-RGIWFRGAY--QGY 249 (525)
Q Consensus 182 ~~~~~-~------nl~-~~-~~~~fvTLNp~~~p~~il~~~~y~HPv~~~~a~~aq~~l~~iqG~-~~~~fcGay--~g~ 249 (525)
..... . |+. .. ....+|++++....++ ...+.||+++....++++++.+++++ ++|||||+| ++|
T Consensus 273 ~~~~~~~ri~~~~~~~~~~~~~~~~v~~e~~~~~~~---~~~p~ypv~~~~~~~~~~~~~~~~~~~~~~~~~Gr~~~~~~ 349 (384)
T 2bi7_A 273 SVDVPYTRITEHKYFSPWEQHDGSVCYKEYSRACEE---NDIPYYPIRQMGEMALLEKYLSLAENETNITFVGRLGTYRY 349 (384)
T ss_dssp STTSSSSEEEEGGGGCTTSCCSEEEEEEEEEEECCT---TCCCCEECCCHHHHHHHHHHHHHHTTCSSEEECHHHHTTCC
T ss_pred CCCCCeeeEEEeeccCCCCCCCCEEEEEEEeccccC---CCccccccCChhHHHHHHHHHHHHhcCCCEEEccccEEEEe
Confidence 32211 0 110 00 1122344443221110 12256999999999999999999998 899999998 568
Q ss_pred CCchhhhchHHHHHhhhcC
Q 043102 250 GFHEDGLKDLSINSCMTYG 268 (525)
Q Consensus 250 GfHEdg~~Sgl~aA~~llG 268 (525)
++||||+.||+++|+.+++
T Consensus 350 ~~~~d~i~sa~~~a~~~~~ 368 (384)
T 2bi7_A 350 LDMDVTIAEALKTAEVYLN 368 (384)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999853
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.5e-09 Score=103.09 Aligned_cols=114 Identities=16% Similarity=0.156 Sum_probs=88.0
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHc---------CCCCC--Cc--------ccCcccHHH
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEA---------DLERN--DR--------SFGHEYMEE 453 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~---------gl~d~--D~--------~vg~~~~~~ 453 (525)
.+||||| +..+++. |++|+|||+|++|++.|++++.-. .+.+. |. |+..+++..
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~ 121 (240)
T 3dli_A 43 RRVLDIGCGRGEFLELCKEE-GIESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFE 121 (240)
T ss_dssp SCEEEETCTTTHHHHHHHHH-TCCEEEECSCHHHHHHHHTTSEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGGGHHH
T ss_pred CeEEEEeCCCCHHHHHHHhC-CCcEEEEECCHHHHHHHHhhcceeeccHHHHhhhcCCCCeeEEEECCchhhCCcHHHHH
Confidence 5999999 6777775 999999999999999999873110 22222 55 666678899
Q ss_pred HHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCC-CCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 454 FFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGG-CLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 454 ~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg-~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
+++++.++|||||++++++.... ....+.+.|++|+. ..++..++.+.++++ ||+++-..
T Consensus 122 ~l~~~~~~LkpgG~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a-Gf~~~~~~ 182 (240)
T 3dli_A 122 LLSLCYSKMKYSSYIVIESPNPT--------SLYSLINFYIDPTHKKPVHPETLKFILEYL-GFRDVKIE 182 (240)
T ss_dssp HHHHHHHHBCTTCCEEEEEECTT--------SHHHHHHHTTSTTCCSCCCHHHHHHHHHHH-TCEEEEEE
T ss_pred HHHHHHHHcCCCcEEEEEeCCcc--------hhHHHHHHhcCccccccCCHHHHHHHHHHC-CCeEEEEE
Confidence 99999999999999999877532 12345666777765 668889999999996 99977543
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-09 Score=106.94 Aligned_cols=118 Identities=12% Similarity=0.131 Sum_probs=88.2
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc-----ccCc
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR-----SFGH 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~-----~vg~ 448 (525)
..+||||| ++.+++..+++|+|||+|++|++.|+++++..|+.++ |. .+..
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 126 (267)
T 3kkz_A 47 KSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYN 126 (267)
T ss_dssp TCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSCGGG
T ss_pred CCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCcee
Confidence 45999999 7788887667999999999999999999998887654 22 1112
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchh-HHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSD-FMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~-fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
-+...+++++.++|||||++++.+++...... ...... |... +| .+++..++.+.++++ ||+++-..
T Consensus 127 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~--~~~~~~~~~~~--~~--~~~~~~~~~~~l~~a-Gf~~v~~~ 194 (267)
T 3kkz_A 127 IGFERGLNEWRKYLKKGGYLAVSECSWFTDER--PAEINDFWMDA--YP--EIDTIPNQVAKIHKA-GYLPVATF 194 (267)
T ss_dssp TCHHHHHHHHGGGEEEEEEEEEEEEEESSSCC--CHHHHHHHHHH--CT--TCEEHHHHHHHHHHT-TEEEEEEE
T ss_pred cCHHHHHHHHHHHcCCCCEEEEEEeeecCCCC--hHHHHHHHHHh--CC--CCCCHHHHHHHHHHC-CCEEEEEE
Confidence 26789999999999999999999886432210 011122 3333 44 678999999999995 99987543
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=6e-10 Score=107.84 Aligned_cols=119 Identities=17% Similarity=0.264 Sum_probs=89.8
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHc--------CCC-----CC--Cc--------ccCc
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEA--------DLE-----RN--DR--------SFGH 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~--------gl~-----d~--D~--------~vg~ 448 (525)
..+||||| +..++++.+++|+|||+|+++++.|+++++.. .+. +. |. |++.
T Consensus 56 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 135 (266)
T 3ujc_A 56 NSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALSL 135 (266)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEESCGGGSCH
T ss_pred CCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHHHHHhcCh
Confidence 34999999 77888766999999999999999999987442 110 11 33 4555
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCC-CCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPG-GCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPG-g~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
++...+++++.++|||||++++.++..+... .....+.+++.+. ..+++..++.+.++++ ||+++-..
T Consensus 136 ~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gf~~~~~~ 204 (266)
T 3ujc_A 136 ENKNKLFQKCYKWLKPTGTLLITDYCATEKE-----NWDDEFKEYVKQRKYTLITVEEYADILTAC-NFKNVVSK 204 (266)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEEEESCGG-----GCCHHHHHHHHHHTCCCCCHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEEeccCCcc-----cchHHHHHHHhcCCCCCCCHHHHHHHHHHc-CCeEEEEE
Confidence 7899999999999999999999988765421 1233445555553 3578999999999995 99887543
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=9.9e-10 Score=109.13 Aligned_cols=80 Identities=15% Similarity=0.111 Sum_probs=65.6
Q ss_pred CCeehhhc------HHHHHHh---cCCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc------------------
Q 043102 398 VREVIFLG------TIEVVKR---TGCKYTGITLAEKQLKYAGIKVKEADLERN------DR------------------ 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~---~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------------------ 444 (525)
+.+||||| ++.++++ .|++|+|||+|++|++.|++++++.+...+ |.
T Consensus 71 ~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~l~ 150 (261)
T 4gek_A 71 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQ 150 (261)
T ss_dssp TCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESCGG
T ss_pred CCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeeeee
Confidence 34999999 6778875 478999999999999999999998876544 21
Q ss_pred ccCcccHHHHHHHHHhccCCCcEEEEEEecCCC
Q 043102 445 SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPD 477 (525)
Q Consensus 445 ~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~ 477 (525)
++...++..++++++++|||||++++.+....+
T Consensus 151 ~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~ 183 (261)
T 4gek_A 151 FLEPSERQALLDKIYQGLNPGGALVLSEKFSFE 183 (261)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCS
T ss_pred ecCchhHhHHHHHHHHHcCCCcEEEEEeccCCC
Confidence 344566788999999999999999998776654
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.4e-10 Score=117.66 Aligned_cols=111 Identities=10% Similarity=0.078 Sum_probs=79.9
Q ss_pred Ceehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc--cc-Cccc
Q 043102 399 REVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR--SF-GHEY 450 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~--~v-g~~~ 450 (525)
.+||||| ++.+|+.. +++|+|+|+|++|++.|++++++.|+.+- |. .. ...+
T Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~ 156 (317)
T 1dl5_A 77 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDE 156 (317)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSC
T ss_pred CEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEcCCHHH
Confidence 3999999 77777753 35799999999999999999988876532 22 00 1111
Q ss_pred HHHHHHHHHhccCCCcEEEEEEecCC--Ccchhcc-cCchhHHhhcccCCCCCCCHHHHHHHHHh
Q 043102 451 MEEFFGCCESLIAKDGLFVLQFISIP--DERYNEF-RLSSDFMKEYIFPGGCLPSLSRITSAMSA 512 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~i~~~--~~~~~~~-~~~~~fi~kYIFPGg~LPsl~~i~~~~~~ 512 (525)
+.+.+.++|||||+++++..... +.....+ +...+|+.+||||++++|++..+...+++
T Consensus 157 ---~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~ 218 (317)
T 1dl5_A 157 ---VPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKDPYLVGNYKLETRFITAGGNLGNLLER 218 (317)
T ss_dssp ---CCHHHHHHEEEEEEEEEEBCBGGGTBCEEEEEEEETTEEEEEEEEECCCCBCCGGGSCHHHH
T ss_pred ---HHHHHHHhcCCCcEEEEEECCCCcccceEEEEEEeCCcEEEEEeccEEEEEccCcccccccc
Confidence 12678999999999999976553 2222222 22457999999999999998877655554
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.9e-09 Score=102.07 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=88.1
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc-----ccCc
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR-----SFGH 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~-----~vg~ 448 (525)
..+||||| +..+++..+++|+|+|+|+++++.|+++++..|+.++ |. .+.+
T Consensus 47 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 126 (257)
T 3f4k_A 47 DAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYN 126 (257)
T ss_dssp TCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCSCC
T ss_pred CCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecChHhh
Confidence 35999999 7888887667999999999999999999999887654 22 1122
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCCcc-hhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPDER-YNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~-~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
-+...+++++.++|||||++++.+....... .. .....|... +|+ +++..++.+.++++ ||+++-..
T Consensus 127 ~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~--~~~~~~~~~--~~~--~~~~~~~~~~l~~a-Gf~~v~~~ 194 (257)
T 3f4k_A 127 IGFERGMNEWSKYLKKGGFIAVSEASWFTSERPA--EIEDFWMDA--YPE--ISVIPTCIDKMERA-GYTPTAHF 194 (257)
T ss_dssp CCHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCH--HHHHHHHHH--CTT--CCBHHHHHHHHHHT-TEEEEEEE
T ss_pred cCHHHHHHHHHHHcCCCcEEEEEEeeccCCCChH--HHHHHHHHh--CCC--CCCHHHHHHHHHHC-CCeEEEEE
Confidence 2688999999999999999999987533221 11 011223333 344 78999999999995 99987643
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.2e-09 Score=109.16 Aligned_cols=117 Identities=11% Similarity=0.121 Sum_probs=89.3
Q ss_pred hhhcccCchhHHHHhhhcccccchHHHHhccccccchh--------------------------ccccCCCeehhhc---
Q 043102 355 RHISRTNTLTQACRHISRHYDLSNELFCLFLDESLTYS--------------------------CALFKVREVIFLG--- 405 (525)
Q Consensus 355 ~~~~~~N~~~~s~~nIa~hYDl~nd~y~l~Ld~~m~ys--------------------------~a~f~~~rVLDIG--- 405 (525)
.++++..++......+...||+..++|+..+.+.+..+ .++-+..+|||||
T Consensus 54 ~~vl~~~~~~~l~~~~~~~y~~~~~~~E~~wa~~l~~~~~p~~~l~~fpy~~~~~~l~~~E~~la~l~~g~rVLDIGcG~ 133 (298)
T 3fpf_A 54 KHILDDAEMNHALSLIRKFYVNLGMKLEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGP 133 (298)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHTSTTHHHHHHHHHHHHHHTTCCTTCEEEEECCCS
T ss_pred HHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhhccCCCcccHHHHHHHHHHHcCCCCcCEEEEECCCc
Confidence 34455566777788888889988888877666544111 1112234999999
Q ss_pred ----HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc---ccCcccHHHHHHHHHhcc
Q 043102 406 ----TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR---SFGHEYMEEFFGCCESLI 462 (525)
Q Consensus 406 ----a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~---~vg~~~~~~~f~~i~r~L 462 (525)
++.+|+..|++|+|||+|++|++.|++++++.|+ ++ |. ....++...+++++.++|
T Consensus 134 G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~d~~FDvV~~~a~~~d~~~~l~el~r~L 212 (298)
T 3fpf_A 134 LPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVIDGLEFDVLMVAALAEPKRRVFRNIHRYV 212 (298)
T ss_dssp SCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGGGCCCSEEEECTTCSCHHHHHHHHHHHC
T ss_pred cHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCCCCCcCEEEECCCccCHHHHHHHHHHHc
Confidence 4667776799999999999999999999999888 44 22 223568899999999999
Q ss_pred CCCcEEEEEE
Q 043102 463 AKDGLFVLQF 472 (525)
Q Consensus 463 kpGG~~viq~ 472 (525)
||||++++..
T Consensus 213 kPGG~Lvv~~ 222 (298)
T 3fpf_A 213 DTETRIIYRT 222 (298)
T ss_dssp CTTCEEEEEE
T ss_pred CCCcEEEEEc
Confidence 9999999976
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.3e-10 Score=117.68 Aligned_cols=125 Identities=7% Similarity=-0.091 Sum_probs=85.7
Q ss_pred eCCEEEEecChHHHHHhhcCCCCHHHHhhccCCc------eeEeccCCCCCCCCCCCccccccccCCCC-C------CC-
Q 043102 124 FYNSCVMALHAPDALKILGNQATFDETRTGGAFH------DIFLHCDKNSMPQNPAAWSAWSFLGSLDS-K------NL- 189 (525)
Q Consensus 124 ~fD~VV~A~hadqAL~lL~~~~t~~E~~iLg~f~------~~vlHtD~s~mP~~~~aWaswNy~~~~~~-~------nl- 189 (525)
.||+||+|+|+++++++ .|+.++ ..+.| |. |..+..| .|||...... . |+
T Consensus 237 ~aD~VI~t~p~~~l~~~-----------~l~~l~y~s~~~~~~~~-~~---~~~~~~~-~~~~~~~~~~~~ri~~~~~~~ 300 (399)
T 1v0j_A 237 PAAPVVYTGPLDRYFDY-----------AEGRLGWRTLDFEVEVL-PI---GDFQGTA-VMNYNDLDVPYTRIHEFRHFH 300 (399)
T ss_dssp TTCCEEECSCHHHHTTT-----------TTCCCCEEEEEEEEEEE-SS---SCSSSSS-EEEECCTTSSCSEEEEGGGGC
T ss_pred cCCEEEECCcHHHHHhh-----------hhCCCCcceEEEEEEEE-cc---ccCCCCe-EEEeCCCCCCcceeEeecCCC
Confidence 69999999999998876 466776 55667 65 3323333 3566432111 0 22
Q ss_pred CC---CCCCeEEEcCCCCCCcceeeEEEecCCCCCHHHHHHHHHhhhhcC-C---CCeEEeccC--CCCCCchhhhchHH
Q 043102 190 GE---TSLPYLVTLNPDHAPEHTLLKWSTGPPVPFVAASKASLELGHIQG-R---RGIWFRGAY--QGYGFHEDGLKDLS 260 (525)
Q Consensus 190 ~~---~~~~~fvTLNp~~~p~~il~~~~y~HPv~~~~a~~aq~~l~~iqG-~---~~~~fcGay--~g~GfHEdg~~Sgl 260 (525)
+. .+...+|++|+....++ ...+.||+++....++++++..+++ . ++|||||+| ++|++||||+.||+
T Consensus 301 ~~~~~~~~~~~v~~e~~~~~~~---~~~~~ypv~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~e~~i~sa~ 377 (399)
T 1v0j_A 301 PERDYPTDKTVIMREYSRFAED---DDEPYYPINTEADRALLATYRARAKSETASSKVLFGGRLGTYQYLDMHMAIASAL 377 (399)
T ss_dssp TTSCCCSSCEEEEEEEEEECCT---TSCCCEECCCHHHHHHHHHHHHHHHHHHHHHCEEECHHHHHTCCCCHHHHHHHHH
T ss_pred CCCcCCCCCeEEEEeecccccC---CCccccccCcHHHHHHHHHHHHHHHhccccCCEEEccceEEEEecCHHHHHHHHH
Confidence 11 01235666664432221 1235699999999999999999885 4 799999998 67788999999999
Q ss_pred HHHhhhc
Q 043102 261 INSCMTY 267 (525)
Q Consensus 261 ~aA~~ll 267 (525)
+||+.++
T Consensus 378 ~~a~~l~ 384 (399)
T 1v0j_A 378 NMYDNVL 384 (399)
T ss_dssp HHHHHTH
T ss_pred HHHHHHh
Confidence 9999984
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=6.3e-09 Score=105.33 Aligned_cols=169 Identities=14% Similarity=0.102 Sum_probs=108.5
Q ss_pred HhccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCceEeCCEEEEecChHHHHHhhcCC---CCHHHHhhccCC
Q 043102 80 SLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGSREFYNSCVMALHAPDALKILGNQ---ATFDETRTGGAF 156 (525)
Q Consensus 80 ~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~~e~fD~VV~A~hadqAL~lL~~~---~t~~E~~iLg~f 156 (525)
.+|+++..+..+.+|..+. .+|.|.+.+|....||.||+|||++++++||.+. ..+++++.|+.+
T Consensus 121 ~~g~~i~~~~~V~~i~~~~------------~~~~v~~~~g~~~~ad~vV~A~p~~~~~~ll~~~~~~l~~~~~~~l~~~ 188 (342)
T 3qj4_A 121 ESGAEVYFRHRVTQINLRD------------DKWEVSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLISECQRQQLEAV 188 (342)
T ss_dssp HHTCEEESSCCEEEEEECS------------SSEEEEESSSCCEEESEEEECSCHHHHTTCBSTHHHHSCHHHHHHHHTC
T ss_pred hcCCEEEeCCEEEEEEEcC------------CEEEEEECCCCEEEcCEEEECCCHHHHHHHhcccccccCHHHHHHHhcC
Confidence 3478887777766664321 2688888888778899999999999999999741 133568899999
Q ss_pred c-----eeEeccCCC-CCCC---------CC-CCccccccccCCCCCCCCCCCCCeEE-EcCC-----------------
Q 043102 157 H-----DIFLHCDKN-SMPQ---------NP-AAWSAWSFLGSLDSKNLGETSLPYLV-TLNP----------------- 202 (525)
Q Consensus 157 ~-----~~vlHtD~s-~mP~---------~~-~aWaswNy~~~~~~~nl~~~~~~~fv-TLNp----------------- 202 (525)
+ .++||.|.. ..+. .. ..|..++-.... . +-+. ..+.+| ...+
T Consensus 189 ~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~-r-~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 265 (342)
T 3qj4_A 189 SYSSRYALGLFYEAGTKIDVPWAGQYITSNPCIRFVSIDNKKRN-I-ESSE-IGPSLVIHTTVPFGVTYLEHSIEDVQEL 265 (342)
T ss_dssp CBCCEEEEEEECSSCC--CCSCSEEECSSCSSEEEEEEHHHHTT-C-CCC--CCCEEEEEECHHHHHHTTTSCHHHHHHH
T ss_pred CccccEEEEEEECCCCccCCceeeEEccCCcceEEEEccccCCC-C-CCCC-CCceEEEECCHHHHHHhhcCCHHHHHHH
Confidence 8 778998864 2221 11 234333222110 0 0110 112332 1110
Q ss_pred -----------CCCCcc-eeeEEEecCCCCCHHHHHHHHHhhhh--cCCCCeEEeccCCCCCCchhhhchHHHHHhhhcC
Q 043102 203 -----------DHAPEH-TLLKWSTGPPVPFVAASKASLELGHI--QGRRGIWFRGAYQGYGFHEDGLKDLSINSCMTYG 268 (525)
Q Consensus 203 -----------~~~p~~-il~~~~y~HPv~~~~a~~aq~~l~~i--qG~~~~~fcGay~g~GfHEdg~~Sgl~aA~~llG 268 (525)
..+|.. ..++|+|..|.+.... ....+ ....++++||+|+.-+-.|||+.||.++|+.++.
T Consensus 266 ~~~~l~~~~g~~~~p~~~~v~rW~~a~p~~~~~~-----~~~~~~~~~~~~l~laGd~~~g~~v~~ai~sg~~aa~~i~~ 340 (342)
T 3qj4_A 266 VFQQLENILPGLPQPIATKCQKWRHSQVTNAAAN-----CPGQMTLHHKPFLACGGDGFTQSNFDGCITSALCVLEALKN 340 (342)
T ss_dssp HHHHHHHHSCSCCCCSEEEEEEETTCSBSSCCSS-----SCSCEEEETTTEEEECSGGGSCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccCCCCCceeeeccccccccccccCC-----CcceeEecCCccEEEEccccCCCCccHHHHHHHHHHHHHHh
Confidence 112332 5679999999986521 12223 3567899999999989999999999999999853
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.5e-09 Score=102.17 Aligned_cols=123 Identities=13% Similarity=0.142 Sum_probs=83.1
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcC-C-------CC-----C-Cc--------ccCc
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEAD-L-------ER-----N-DR--------SFGH 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~g-l-------~d-----~-D~--------~vg~ 448 (525)
..+||||| +..+++.. +++|+|+|+|+++++.|+++++..+ + .+ . |. |+..
T Consensus 45 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 124 (234)
T 3dtn_A 45 NPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHLED 124 (234)
T ss_dssp SCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGGGSCH
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCccccCCH
Confidence 35999999 67777765 8899999999999999999976433 0 00 0 33 3444
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcc-------------cCchhHHhhc--ccCCCCCCCHHHHHHHHHhc
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEF-------------RLSSDFMKEY--IFPGGCLPSLSRITSAMSAA 513 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~-------------~~~~~fi~kY--IFPGg~LPsl~~i~~~~~~a 513 (525)
.....+++++.++|||||++++.+...++...... .....-+... -......++.+++.+.++++
T Consensus 125 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 204 (234)
T 3dtn_A 125 EDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEA 204 (234)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHHHHHc
Confidence 45557999999999999999998877655421100 0001111110 01334667899999999996
Q ss_pred CCcEEEEE
Q 043102 514 SRLWYNLA 521 (525)
Q Consensus 514 ~gl~V~~~ 521 (525)
||+++-.
T Consensus 205 -GF~~v~~ 211 (234)
T 3dtn_A 205 -GFRDVSC 211 (234)
T ss_dssp -TCEEEEE
T ss_pred -CCCceee
Confidence 9997644
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=98.84 E-value=8.4e-09 Score=99.69 Aligned_cols=118 Identities=10% Similarity=0.006 Sum_probs=85.7
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc--c--c--C
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR--S--F--G 447 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~--~--v--g 447 (525)
+..+||||| +..+++..|++|+|+|+|+++++.|+++++..|+.++ |. . + .
T Consensus 36 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~V~~~~~~~~ 115 (256)
T 1nkv_A 36 PGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWI 115 (256)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEEEEEEESCGGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCCCCEEEECCChHh
Confidence 345999999 7788887799999999999999999999998887644 22 0 0 1
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccC-CCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFP-GGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFP-Gg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
..+...+++++.++|||||++++.+....... ....+.+.+..+ ...+++..++.+.++++ ||+++-
T Consensus 116 ~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-Gf~~~~ 183 (256)
T 1nkv_A 116 AGGFAGAEELLAQSLKPGGIMLIGEPYWRQLP-----ATEEIAQACGVSSTSDFLTLPGLVGAFDDL-GYDVVE 183 (256)
T ss_dssp TSSSHHHHHHHTTSEEEEEEEEEEEEEETTCC-----SSHHHHHTTTCSCGGGSCCHHHHHHHHHTT-TBCCCE
T ss_pred cCCHHHHHHHHHHHcCCCeEEEEecCcccCCC-----ChHHHHHHHhcccccccCCHHHHHHHHHHC-CCeeEE
Confidence 23678999999999999999999776543221 112222221111 12668999999999995 898654
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.82 E-value=7.1e-09 Score=102.44 Aligned_cols=122 Identities=12% Similarity=0.075 Sum_probs=85.0
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-------------------Cc----cc--C
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-------------------DR----SF--G 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-------------------D~----~v--g 447 (525)
.+||||| +..+++. |++|+|||+|+++++.|+++++..|+..+ |. .+ .
T Consensus 70 ~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 148 (285)
T 4htf_A 70 LRVLDAGGGEGQTAIKMAER-GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLEW 148 (285)
T ss_dssp CEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGGG
T ss_pred CEEEEeCCcchHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhhc
Confidence 4999999 7778876 99999999999999999999988776432 22 00 1
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcc-cCchhHHhhccc-------CCCCCCCHHHHHHHHHhcCCcEEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEF-RLSSDFMKEYIF-------PGGCLPSLSRITSAMSAASRLWYN 519 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~-~~~~~fi~kYIF-------PGg~LPsl~~i~~~~~~a~gl~V~ 519 (525)
..+...+++++.++|||||++++.........+... ......+...+. ......+.+++.+.++++ ||+++
T Consensus 149 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a-Gf~v~ 227 (285)
T 4htf_A 149 VADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEA-GWQIM 227 (285)
T ss_dssp CSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHT-TCEEE
T ss_pred ccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHC-CCcee
Confidence 346789999999999999999998775432211110 111122222221 123567899999999996 99987
Q ss_pred EEE
Q 043102 520 LAV 522 (525)
Q Consensus 520 ~~~ 522 (525)
-..
T Consensus 228 ~~~ 230 (285)
T 4htf_A 228 GKT 230 (285)
T ss_dssp EEE
T ss_pred eee
Confidence 543
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-08 Score=95.91 Aligned_cols=122 Identities=13% Similarity=0.122 Sum_probs=81.4
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHH-HcC-----CC-----CC-Cc--------ccCccc
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVK-EAD-----LE-----RN-DR--------SFGHEY 450 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~-~~g-----l~-----d~-D~--------~vg~~~ 450 (525)
+..+||||| +..++++ +++|+|+|+|+++++.|++++. ... +. .. |. |+....
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~~ 123 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVSTYAFHHLTDDE 123 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHT-TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEEESCGGGSCHHH
T ss_pred CCCeEEEeCCCCCHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEECcchhcCChHH
Confidence 345999999 6777775 9999999999999999999865 110 00 01 43 333333
Q ss_pred HHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhc-------ccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 451 MEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEY-------IFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kY-------IFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
...+++++.++|||||++++.+......... .....+.... -.+..++|+.+++.+.++++ ||+|....
T Consensus 124 ~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-Gf~v~~~~ 199 (220)
T 3hnr_A 124 KNVAIAKYSQLLNKGGKIVFADTIFADQDAY--DKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENN-GFHVTFTR 199 (220)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEECBSSHHHH--HHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHT-TEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEeccccChHHH--HHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHC-CCEEEEee
Confidence 4459999999999999999987655432211 0001111110 11223678999999999995 99987653
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.77 E-value=6.5e-09 Score=104.26 Aligned_cols=124 Identities=13% Similarity=0.078 Sum_probs=88.5
Q ss_pred CCeehhhc------HHHHH--HhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc--------
Q 043102 398 VREVIFLG------TIEVV--KRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR-------- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA--~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~-------- 444 (525)
..+||||| ++.+| ...+++|+|+|+|+++++.|+++++..|+.++ |.
T Consensus 119 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~ 198 (305)
T 3ocj_A 119 GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNGLNI 198 (305)
T ss_dssp TCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCSSGG
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECChhh
Confidence 45999999 55553 33578999999999999999999988777543 22
Q ss_pred cc-CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchh-------cccCchhHHhhcccCCC------CCCCHHHHHHHH
Q 043102 445 SF-GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYN-------EFRLSSDFMKEYIFPGG------CLPSLSRITSAM 510 (525)
Q Consensus 445 ~v-g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~-------~~~~~~~fi~kYIFPGg------~LPsl~~i~~~~ 510 (525)
|+ .......+++++.++|||||++++.++..+..... .+.....++.+++|+.. .+.+.+++.+.+
T Consensus 199 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 278 (305)
T 3ocj_A 199 YEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQL 278 (305)
T ss_dssp GCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHHHH
Confidence 22 23344568999999999999999988765432110 12222335555555533 557999999999
Q ss_pred HhcCCcEEEEEE
Q 043102 511 SAASRLWYNLAV 522 (525)
Q Consensus 511 ~~a~gl~V~~~~ 522 (525)
+++ ||+++-..
T Consensus 279 ~~a-GF~~v~~~ 289 (305)
T 3ocj_A 279 EEA-GFTDLRFE 289 (305)
T ss_dssp HHT-TCEEEEEE
T ss_pred HHC-CCEEEEEE
Confidence 996 99987654
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=98.73 E-value=3e-08 Score=93.93 Aligned_cols=109 Identities=13% Similarity=0.032 Sum_probs=74.8
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHc---------------CCC----C---C------
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEA---------------DLE----R---N------ 442 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~---------------gl~----d---~------ 442 (525)
+..+|||+| +..+|++ |++|+|||+|++|++.|+++.+.. .+. | -
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~-g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 100 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIG 100 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHH
T ss_pred CCCEEEEeCCCCcHhHHHHHHC-CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCC
Confidence 345999999 8888886 999999999999999999986421 110 0 0
Q ss_pred --Cc--------ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHh
Q 043102 443 --DR--------SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSA 512 (525)
Q Consensus 443 --D~--------~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~ 512 (525)
|. |+..+....+++++.++|||||++++.++....... . -| .+..+.+++.+.+++
T Consensus 101 ~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~----~---------~~-~~~~~~~el~~~~~~ 166 (203)
T 1pjz_A 101 HCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALL----E---------GP-PFSVPQTWLHRVMSG 166 (203)
T ss_dssp SEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSS----S---------SC-CCCCCHHHHHHTSCS
T ss_pred CEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcccc----C---------CC-CCCCCHHHHHHHhcC
Confidence 22 334456778999999999999997666654332100 0 01 112467888877765
Q ss_pred cCCcEEEEEE
Q 043102 513 ASRLWYNLAV 522 (525)
Q Consensus 513 a~gl~V~~~~ 522 (525)
||++....
T Consensus 167 --gf~i~~~~ 174 (203)
T 1pjz_A 167 --NWEVTKVG 174 (203)
T ss_dssp --SEEEEEEE
T ss_pred --CcEEEEec
Confidence 78876543
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=5e-08 Score=95.98 Aligned_cols=125 Identities=15% Similarity=0.143 Sum_probs=81.4
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-------------------Cc-------
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-------------------DR------- 444 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-------------------D~------- 444 (525)
+..+||||| +..+++...++|+|+|+|+++++.|++++...++..+ |.
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 143 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF 143 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchh
Confidence 345999999 6677775334999999999999999999887654221 22
Q ss_pred -c--cCcccHHHHHHHHHhccCCCcEEEEEEecCCCc------------chhcccC---chh--HHhhccc---CC----
Q 043102 445 -S--FGHEYMEEFFGCCESLIAKDGLFVLQFISIPDE------------RYNEFRL---SSD--FMKEYIF---PG---- 497 (525)
Q Consensus 445 -~--vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~------------~~~~~~~---~~~--fi~kYIF---PG---- 497 (525)
+ ...++...+++++.++|||||++++.......- .|..... ..+ +-.+|.| +.
T Consensus 144 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 223 (298)
T 1ri5_A 144 HYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNC 223 (298)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSSE
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhcCC
Confidence 1 124567899999999999999999976542110 0000000 000 0011111 11
Q ss_pred -CCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 498 -GCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 498 -g~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
..+.+.+++.+.++++ ||+++-..
T Consensus 224 ~~~~~~~~~l~~ll~~a-Gf~~v~~~ 248 (298)
T 1ri5_A 224 IEYFVDFTRMVDGFKRL-GLSLVERK 248 (298)
T ss_dssp EEECCCHHHHHHHHHTT-TEEEEEEE
T ss_pred cccccCHHHHHHHHHHc-CCEEEEec
Confidence 2467889999999995 99987543
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.4e-08 Score=93.61 Aligned_cols=121 Identities=16% Similarity=0.180 Sum_probs=79.2
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHH-HH-----cCCCC----C--Cc--------ccCcccH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKV-KE-----ADLER----N--DR--------SFGHEYM 451 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~-~~-----~gl~d----~--D~--------~vg~~~~ 451 (525)
..+||||| +..+++. |++|+|+|+|+++++.|+++- .. ..+.+ . |. |+..+.+
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~~~ 125 (218)
T 3ou2_A 47 RGDVLELASGTGYWTRHLSGL-ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLAHVPDDRF 125 (218)
T ss_dssp CSEEEEESCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEEEESCGGGSCHHHH
T ss_pred CCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEEEechhhcCCHHHH
Confidence 35999999 7777776 999999999999999999721 00 00000 0 33 3444446
Q ss_pred HHHHHHHHhccCCCcEEEEEEecCCCcchhcc--cCchhHHhhcccCCC-------CCCCHHHHHHHHHhcCCcEEEEE
Q 043102 452 EEFFGCCESLIAKDGLFVLQFISIPDERYNEF--RLSSDFMKEYIFPGG-------CLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~--~~~~~fi~kYIFPGg-------~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
..+++++.++|||||++++.+...+....... ....+++.+. +|.+ .+++..++.+.++++ ||+|...
T Consensus 126 ~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~a-Gf~v~~~ 202 (218)
T 3ou2_A 126 EAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRT-LQDGRSFRIVKVFRSPAELTERLTAL-GWSCSVD 202 (218)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEE-CTTSCEEEEECCCCCHHHHHHHHHHT-TEEEEEE
T ss_pred HHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeee-cCCcchhhHhhcCCCHHHHHHHHHHC-CCEEEee
Confidence 89999999999999999999887643321110 0012222222 2222 367999999999995 9997654
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.69 E-value=5.4e-08 Score=94.64 Aligned_cols=121 Identities=13% Similarity=-0.007 Sum_probs=84.6
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc----cc--Cc
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR----SF--GH 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~----~v--g~ 448 (525)
..+||||| +..++++ +.+|+|+|+|++|++.|++++++.|+..- |. .+ ..
T Consensus 38 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~l~~~ 116 (260)
T 1vl5_A 38 NEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHF 116 (260)
T ss_dssp CCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGGGC
T ss_pred CCEEEEEeCCCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhhhHhc
Confidence 35999999 6677765 67999999999999999999987765421 22 00 12
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccC-CCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFP-GGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFP-Gg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
.+...+++++.++|||||++++.....++.... ......+....-| .....+..++.+.++++ ||++....
T Consensus 117 ~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-Gf~~~~~~ 188 (260)
T 1vl5_A 117 PNPASFVSEAYRVLKKGGQLLLVDNSAPENDAF--DVFYNYVEKERDYSHHRAWKKSDWLKMLEEA-GFELEELH 188 (260)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHH--HHHHHHHHHHHCTTCCCCCBHHHHHHHHHHH-TCEEEEEE
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHH--HHHHHHHHHhcCccccCCCCHHHHHHHHHHC-CCeEEEEE
Confidence 467899999999999999999987765543211 0111112222122 33567889999999996 99876543
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.2e-08 Score=92.87 Aligned_cols=122 Identities=13% Similarity=0.130 Sum_probs=82.5
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------------Cc-----
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN----------------------DR----- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------------D~----- 444 (525)
..+||||| +..+++. |++|+|+|+|+++++.|+++++..++... |.
T Consensus 31 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 109 (235)
T 3sm3_A 31 DDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQA 109 (235)
T ss_dssp TCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEES
T ss_pred CCeEEEECCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEcc
Confidence 34999999 7777876 99999999999999999999887766311 22
Q ss_pred ---ccC-cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccC--chhH---------HhhcccC-----CCCCCCHH
Q 043102 445 ---SFG-HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRL--SSDF---------MKEYIFP-----GGCLPSLS 504 (525)
Q Consensus 445 ---~vg-~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~--~~~f---------i~kYIFP-----Gg~LPsl~ 504 (525)
++. ...+..+++++.++|||||++++.+........ .+.. ...+ ....-.. .....+.+
T Consensus 110 ~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (235)
T 3sm3_A 110 FLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLK-LYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEK 188 (235)
T ss_dssp CGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSH-HHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHH-HHHHHhhhhccchhhhcceEecccccCCcceeeEeCCHH
Confidence 221 233458999999999999999998876532210 0000 0000 0000000 01467999
Q ss_pred HHHHHHHhcCCcEEEEEE
Q 043102 505 RITSAMSAASRLWYNLAV 522 (525)
Q Consensus 505 ~i~~~~~~a~gl~V~~~~ 522 (525)
++.+.++++ ||++.-..
T Consensus 189 ~l~~ll~~a-Gf~~~~~~ 205 (235)
T 3sm3_A 189 ELVFLLTDC-RFEIDYFR 205 (235)
T ss_dssp HHHHHHHTT-TEEEEEEE
T ss_pred HHHHHHHHc-CCEEEEEE
Confidence 999999996 99987654
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=9e-09 Score=102.69 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=61.6
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC--CC-----------------Cc---------
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE--RN-----------------DR--------- 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~--d~-----------------D~--------- 444 (525)
.+||||| +..++++ |++|+|||+|+++++.|++++...++. .+ |.
T Consensus 84 ~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~ 162 (299)
T 3g2m_A 84 GPVLELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSGSIN 162 (299)
T ss_dssp SCEEEETCTTTTTHHHHHTT-TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCSCCEEEEEECHHHHT
T ss_pred CcEEEEeccCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcCCCcCEEEECCcccc
Confidence 4999999 7788876 899999999999999999998876521 11 32
Q ss_pred ccCcccHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 445 SFGHEYMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 445 ~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
++..++...+++++.++|||||++++.....
T Consensus 163 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 193 (299)
T 3g2m_A 163 ELDEADRRGLYASVREHLEPGGKFLLSLAMS 193 (299)
T ss_dssp TSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred cCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence 2234467899999999999999999987654
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.67 E-value=5.9e-08 Score=91.25 Aligned_cols=112 Identities=14% Similarity=0.122 Sum_probs=79.8
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcC-------CC-CC--Cc--------ccCcccHHH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEAD-------LE-RN--DR--------SFGHEYMEE 453 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~g-------l~-d~--D~--------~vg~~~~~~ 453 (525)
..+||||| +..+++. |++|+|+|+|+++++.|++++...- +. +. |. |+..++...
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~~~~~ 122 (211)
T 3e23_A 44 GAKILELGCGAGYQAEAMLAA-GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRDELAD 122 (211)
T ss_dssp TCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHHHHHH
T ss_pred CCcEEEECCCCCHHHHHHHHc-CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHHHHHH
Confidence 45999999 7777775 8999999999999999999862100 01 00 33 444557889
Q ss_pred HHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCC-cEEEEEE
Q 043102 454 FFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASR-LWYNLAV 522 (525)
Q Consensus 454 ~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~g-l~V~~~~ 522 (525)
+++++.++|||||++++.......... +....+ ....+.+++.+.++++ | |+++-..
T Consensus 123 ~l~~~~~~LkpgG~l~~~~~~~~~~~~-------~~~~~~----~~~~~~~~~~~~l~~a-G~f~~~~~~ 180 (211)
T 3e23_A 123 VLKLIWRALKPGGLFYASYKSGEGEGR-------DKLARY----YNYPSEEWLRARYAEA-GTWASVAVE 180 (211)
T ss_dssp HHHHHHHHEEEEEEEEEEEECCSSCEE-------CTTSCE----ECCCCHHHHHHHHHHH-CCCSEEEEE
T ss_pred HHHHHHHhcCCCcEEEEEEcCCCcccc-------cccchh----ccCCCHHHHHHHHHhC-CCcEEEEEE
Confidence 999999999999999997654332211 111111 2457999999999996 8 8876543
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=98.66 E-value=5.9e-08 Score=94.86 Aligned_cols=124 Identities=12% Similarity=0.110 Sum_probs=83.7
Q ss_pred CCCeehhhc------HHHHHHhcC--CEEEEEcCChH------HHHHHHHHHHHcCCCCC--------------------
Q 043102 397 KVREVIFLG------TIEVVKRTG--CKYTGITLAEK------QLKYAGIKVKEADLERN-------------------- 442 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G--~~VtGIdlS~e------ql~~Ar~r~~~~gl~d~-------------------- 442 (525)
+..+||||| +..++++.| ++|+|+|+|++ |++.|+++++..++.++
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 122 (275)
T 3bkx_A 43 PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQH 122 (275)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTCC
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCCC
Confidence 345999999 778887654 89999999997 99999999887654221
Q ss_pred -Cc----cc--CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchh-HHhhccc------CCC--CCCCHHHH
Q 043102 443 -DR----SF--GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSD-FMKEYIF------PGG--CLPSLSRI 506 (525)
Q Consensus 443 -D~----~v--g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~-fi~kYIF------PGg--~LPsl~~i 506 (525)
|. .+ ...+...+++.+.++++|||++++.++..+............ +++..++ ++. .+++.+++
T Consensus 123 fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 202 (275)
T 3bkx_A 123 FDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANIRTLITPDTL 202 (275)
T ss_dssp CSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCSCCCCCCHHHH
T ss_pred EEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccccccccccCCHHHH
Confidence 22 00 123456678888888888999999998876542211111111 1211111 222 57999999
Q ss_pred HHHHHhcCCcEEEEE
Q 043102 507 TSAMSAASRLWYNLA 521 (525)
Q Consensus 507 ~~~~~~a~gl~V~~~ 521 (525)
.+.++++ ||+++-.
T Consensus 203 ~~~l~~a-Gf~~~~~ 216 (275)
T 3bkx_A 203 AQIAHDN-TWTYTAG 216 (275)
T ss_dssp HHHHHHH-TCEEEEC
T ss_pred HHHHHHC-CCeeEEE
Confidence 9999996 9998754
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.2e-07 Score=98.06 Aligned_cols=173 Identities=15% Similarity=0.176 Sum_probs=108.8
Q ss_pred HHHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEe---CCCceEeCCEEEEecChHHHHHhhcCCCCHHHHhhcc
Q 043102 78 FESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVC---GDGSREFYNSCVMALHAPDALKILGNQATFDETRTGG 154 (525)
Q Consensus 78 ~~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~---~~g~~e~fD~VV~A~hadqAL~lL~~~~t~~E~~iLg 154 (525)
-+.+|+++.++..+.+|..+. .++.|.+ .+|++..+|+||+|+++.++.+||.. .+++.++.|.
T Consensus 245 ~~~lg~~i~~~~~V~~i~~~~------------~~~~v~~~~~~~g~~~~ad~vV~a~~~~~~~~ll~~-l~~~~~~~l~ 311 (478)
T 2ivd_A 245 AASLGDAAHVGARVEGLARED------------GGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRP-LDDALAALVA 311 (478)
T ss_dssp HHHHGGGEESSEEEEEEECC--------------CCEEEEEETTEEEEEECSEEEECSCHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHhhhhEEcCCEEEEEEecC------------CeEEEEEeecCCCceEEcCEEEECCCHHHHHHHhhc-cCHHHHHHHh
Confidence 344577787777777775421 1356666 56767889999999999999999973 6677778888
Q ss_pred CCc-----eeEeccCCCCCCCCCCCccccccccCC--CCC---------CCC---CCCCCeE---EEcCC----------
Q 043102 155 AFH-----DIFLHCDKNSMPQNPAAWSAWSFLGSL--DSK---------NLG---ETSLPYL---VTLNP---------- 202 (525)
Q Consensus 155 ~f~-----~~vlHtD~s~mP~~~~aWaswNy~~~~--~~~---------nl~---~~~~~~f---vTLNp---------- 202 (525)
.++ .++++.|...+|.. .. |.+.... +.. +.+ +.+..++ +.-..
T Consensus 312 ~~~~~~~~~v~l~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~~ 387 (478)
T 2ivd_A 312 GIAYAPIAVVHLGFDAGTLPAP-DG---FGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLVEQDED 387 (478)
T ss_dssp TCCBCCEEEEEEEECTTSSCCC-CS---SEEECCGGGCCSCCEEEEHHHHCGGGBSTTCEEEEEEEECTTCGGGGGSCHH
T ss_pred cCCCCcEEEEEEEEccccCCCC-Cc---eEEEecCCCCCceEEEEEEcccCCCcCCCCCEEEEEEeCCcCCccccCCCHH
Confidence 877 78888887766642 11 2222110 000 000 1112221 11111
Q ss_pred ----------------CCCCcc-eeeEEEecCCCCCHHHHHHHHHhhhhcC-CCCeEEeccCC-CCCCchhhhchHHHHH
Q 043102 203 ----------------DHAPEH-TLLKWSTGPPVPFVAASKASLELGHIQG-RRGIWFRGAYQ-GYGFHEDGLKDLSINS 263 (525)
Q Consensus 203 ----------------~~~p~~-il~~~~y~HPv~~~~a~~aq~~l~~iqG-~~~~~fcGay~-g~GfHEdg~~Sgl~aA 263 (525)
...|.. ...+|.+..|.+++........+..... .+++||||+|+ +.| -|+++.||++||
T Consensus 388 ~~~~~~~~~l~~~~~~~~~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~g-v~gA~~SG~~aA 466 (478)
T 2ivd_A 388 ALAALAREELKALAGVTARPSFTRVFRWPLGIPQYNLGHLERVAAIDAALQRLPGLHLIGNAYKGVG-LNDCIRNAAQLA 466 (478)
T ss_dssp HHHHHHHHHHHHHHCCCSCCSEEEEEEESSCCBCCBTTHHHHHHHHHHHHHTSTTEEECSTTTSCCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCcEEEEEECCCcccCCCcCHHHHHHHHHHHHhhCCCEEEEccCCCCCC-HHHHHHHHHHHH
Confidence 111222 3457877888888876555544543332 47899999998 455 699999999999
Q ss_pred hhhcC
Q 043102 264 CMTYG 268 (525)
Q Consensus 264 ~~llG 268 (525)
+.+++
T Consensus 467 ~~i~~ 471 (478)
T 2ivd_A 467 DALVA 471 (478)
T ss_dssp HHHCC
T ss_pred HHHHH
Confidence 99854
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-08 Score=95.61 Aligned_cols=120 Identities=12% Similarity=0.054 Sum_probs=82.3
Q ss_pred eehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc----cc--Ccc
Q 043102 400 EVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR----SF--GHE 449 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~----~v--g~~ 449 (525)
+||||| +..++++.+++|+|+|+|+++++.|+++++..++.++ |. .+ ..+
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~ 125 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWE 125 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGCS
T ss_pred EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhhcc
Confidence 999999 6777776688999999999999999999998887544 22 00 125
Q ss_pred cHHHHHHHHHhccCCCcEEEEEEecCCCcchhccc-----CchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 450 YMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFR-----LSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 450 ~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~-----~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
+...+++++.++|||||++++.............. ....|... +-+.....+.+++.+.++++ ||+++-.
T Consensus 126 ~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~a-Gf~~v~~ 200 (219)
T 3dlc_A 126 DVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEF-NRKNISQENVERFQNVLDEI-GISSYEI 200 (219)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHH-HHHHSSHHHHHHHHHHHHHH-TCSSEEE
T ss_pred CHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhh-hhhccccCCHHHHHHHHHHc-CCCeEEE
Confidence 77899999999999999999976544332111000 01112211 00122334778999999996 8976543
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.64 E-value=4e-08 Score=94.16 Aligned_cols=107 Identities=13% Similarity=0.125 Sum_probs=79.4
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc--------ccC
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR--------SFG 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~--------~vg 447 (525)
.+||||| +..+++ .|++|+|+|+|+++++.|+++++..+...+ |. ++.
T Consensus 68 ~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~ 146 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMAS-PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAIE 146 (235)
T ss_dssp EEEEEETCTTCHHHHHHCB-TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTTSC
T ss_pred CCEEEeCCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhcCC
Confidence 4999999 666666 589999999999999999999876442111 22 345
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
.++...+++++.++|||||++++......+.. ... | +..+.+++.+.++++ ||+++...
T Consensus 147 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-----~~~--------~--~~~~~~~~~~~l~~~-Gf~~~~~~ 205 (235)
T 3lcc_A 147 PEMRPAWAKSMYELLKPDGELITLMYPITDHV-----GGP--------P--YKVDVSTFEEVLVPI-GFKAVSVE 205 (235)
T ss_dssp GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCC-----SCS--------S--CCCCHHHHHHHHGGG-TEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCcEEEEEEecccccC-----CCC--------C--ccCCHHHHHHHHHHc-CCeEEEEE
Confidence 56889999999999999999998766443211 000 1 225789999999885 99987543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.2e-07 Score=88.44 Aligned_cols=110 Identities=15% Similarity=0.212 Sum_probs=79.9
Q ss_pred eehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc------ccCcccH
Q 043102 400 EVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR------SFGHEYM 451 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~------~vg~~~~ 451 (525)
+||||| +..+++. |++|+|+|+|+++++.|+++++..++... |. |....+.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~ 110 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLR 110 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT-TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEECCCCCHHHH
T ss_pred CEEEECCCCCHhHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEhhcCCHHHH
Confidence 999999 6777775 89999999999999999999876554111 33 3334578
Q ss_pred HHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 452 EEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
..+++++.++|||||++++.........+.. ..+ .......+..++.+.++ ||++....
T Consensus 111 ~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~---~~~------~~~~~~~~~~~l~~~l~---Gf~v~~~~ 169 (202)
T 2kw5_A 111 QQLYPKVYQGLKPGGVFILEGFAPEQLQYNT---GGP------KDLDLLPKLETLQSELP---SLNWLIAN 169 (202)
T ss_dssp HHHHHHHHTTCCSSEEEEEEEECTTTGGGTS---CCS------SSGGGCCCHHHHHHHCS---SSCEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEEEeccccccCCC---CCC------CcceeecCHHHHHHHhc---CceEEEEE
Confidence 8999999999999999999887644332210 000 01124688999998887 78887643
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.1e-08 Score=99.51 Aligned_cols=75 Identities=9% Similarity=-0.012 Sum_probs=59.3
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------------Cc-----
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------------DR----- 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------------D~----- 444 (525)
.|||||| +.++++..+.+|||||+|++|++.|+++.+..+...+ |.
T Consensus 62 ~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~~~ 141 (236)
T 3orh_A 62 GRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSE 141 (236)
T ss_dssp EEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBG
T ss_pred CeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeeeccc
Confidence 4999999 7778876678999999999999999999877664221 22
Q ss_pred -ccCcccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 445 -SFGHEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 445 -~vg~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
.....+.+.+++++.|+|||||+|++...
T Consensus 142 ~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~ 171 (236)
T 3orh_A 142 ETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp GGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred chhhhcchhhhhhhhhheeCCCCEEEEEec
Confidence 11234678999999999999999987543
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.61 E-value=7.9e-08 Score=96.94 Aligned_cols=123 Identities=15% Similarity=0.124 Sum_probs=89.6
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc--------c
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR--------S 445 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~--------~ 445 (525)
..+||||| +..+++++ +++|+++|+| ++++.|++++++.++.++ |. +
T Consensus 166 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l~~ 244 (335)
T 2r3s_A 166 PLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHH 244 (335)
T ss_dssp CSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCGGG
T ss_pred CCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchhcc
Confidence 35999999 67777764 7899999999 999999999887766543 22 2
Q ss_pred cCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhc-ccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 446 FGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNE-FRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 446 vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~-~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
+..++...+++++.++|||||++++.+...++..... .....++......|++...+.+++.+.++++ ||+++-..
T Consensus 245 ~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~a-Gf~~~~~~ 321 (335)
T 2r3s_A 245 FDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNA-GFSHSQLH 321 (335)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHT-TCSEEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHC-CCCeeeEE
Confidence 3345668999999999999999999888766532110 0111222222234688889999999999996 99876543
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.3e-08 Score=91.53 Aligned_cols=113 Identities=12% Similarity=0.138 Sum_probs=81.0
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCC----------CCC--Cc--------ccCcccH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADL----------ERN--DR--------SFGHEYM 451 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl----------~d~--D~--------~vg~~~~ 451 (525)
..+||||| +..++++ |++|+|+|+|+++++.|+++.....+ .+. |. |+..++.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~ 120 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL-GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGEL 120 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT-TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTH
T ss_pred CCeEEEecCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHH
Confidence 35999999 7777875 89999999999999999998432111 111 33 4455688
Q ss_pred HHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 452 EEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
..+++++.++|||||++++......... .. ..... .....+..++.+.++++ ||++.-..
T Consensus 121 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~--~~-------~~~~~-~~~~~~~~~~~~~l~~~-Gf~~~~~~ 180 (203)
T 3h2b_A 121 PDALVALRMAVEDGGGLLMSFFSGPSLE--PM-------YHPVA-TAYRWPLPELAQALETA-GFQVTSSH 180 (203)
T ss_dssp HHHHHHHHHTEEEEEEEEEEEECCSSCE--EE-------CCSSS-CEEECCHHHHHHHHHHT-TEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEccCCchh--hh-------hchhh-hhccCCHHHHHHHHHHC-CCcEEEEE
Confidence 9999999999999999999876544311 00 00111 22446899999999995 99987654
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.59 E-value=9e-08 Score=93.73 Aligned_cols=124 Identities=11% Similarity=0.075 Sum_probs=85.1
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc----c-c-C
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR----S-F-G 447 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~----~-v-g 447 (525)
..+||||| +..+++.. +++|+|+|+|+++++.|+++++..++... |. . + .
T Consensus 38 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 117 (276)
T 3mgg_A 38 GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEH 117 (276)
T ss_dssp TCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCGGG
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechhhh
Confidence 45999999 67777764 78999999999999999999988776422 22 0 0 1
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcc-cCc----hhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEF-RLS----SDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~-~~~----~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
..+...+++++.++|||||++++.+.......+... ... ..+.......++...+..++.+.++++ ||+++-+.
T Consensus 118 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a-Gf~~v~~~ 196 (276)
T 3mgg_A 118 LQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQES-GFEKIRVE 196 (276)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHT-TCEEEEEE
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHC-CCCeEEEe
Confidence 346789999999999999999998754321111000 001 111222224456666778899999996 99987554
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.5e-07 Score=95.63 Aligned_cols=121 Identities=13% Similarity=0.112 Sum_probs=91.2
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc--------ccC
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR--------SFG 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~--------~vg 447 (525)
.+||||| +..+++++ +++++++|+ +++++.|++++.+.++.++ |. +..
T Consensus 204 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~ 282 (369)
T 3gwz_A 204 ATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWD 282 (369)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEEEEESCGGGSC
T ss_pred cEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEEEhhhhhccCC
Confidence 4999999 77777764 789999999 9999999999998887654 22 223
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEEe
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAVS 523 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~~ 523 (525)
.+....+++++.++|||||+++|.+...++..... ....++ .....+++...+.+++.+.++++ ||+++-...
T Consensus 283 d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~-~~~~d~-~~~~~~~g~~~t~~e~~~ll~~a-Gf~~~~~~~ 355 (369)
T 3gwz_A 283 DDDVVRILRRIATAMKPDSRLLVIDNLIDERPAAS-TLFVDL-LLLVLVGGAERSESEFAALLEKS-GLRVERSLP 355 (369)
T ss_dssp HHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHH-HHHHHH-HHHHHHSCCCBCHHHHHHHHHTT-TEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc-hhHhhH-HHHhhcCCccCCHHHHHHHHHHC-CCeEEEEEE
Confidence 34445899999999999999999998877643211 111111 11234688899999999999996 999887654
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.6e-07 Score=92.76 Aligned_cols=108 Identities=12% Similarity=0.105 Sum_probs=76.2
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH--------------------cCCC-----------
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE--------------------ADLE----------- 440 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~--------------------~gl~----------- 440 (525)
..+|||+| +..+|++ |++|+|||+|+++++.|+++... ..+.
T Consensus 69 ~~~vLD~GCG~G~~~~~La~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~ 147 (252)
T 2gb4_A 69 GLRVFFPLCGKAIEMKWFADR-GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPR 147 (252)
T ss_dssp SCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGG
T ss_pred CCeEEEeCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCc
Confidence 45999999 8889986 99999999999999999887631 0100
Q ss_pred ---CC-Cc--------ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHH
Q 043102 441 ---RN-DR--------SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITS 508 (525)
Q Consensus 441 ---d~-D~--------~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~ 508 (525)
.. |. ++..+....+++++.++|||||++++.++....... . -|. +..+.+++.+
T Consensus 148 ~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~----~---------g~~-~~~~~~el~~ 213 (252)
T 2gb4_A 148 ANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKH----A---------GPP-FYVPSAELKR 213 (252)
T ss_dssp GCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSC----C---------CSS-CCCCHHHHHH
T ss_pred ccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccC----C---------CCC-CCCCHHHHHH
Confidence 00 22 344567889999999999999999876665332110 0 111 2257889998
Q ss_pred HHHhcCCcEEEEEE
Q 043102 509 AMSAASRLWYNLAV 522 (525)
Q Consensus 509 ~~~~a~gl~V~~~~ 522 (525)
.++. +|+|....
T Consensus 214 ~l~~--~f~v~~~~ 225 (252)
T 2gb4_A 214 LFGT--KCSMQCLE 225 (252)
T ss_dssp HHTT--TEEEEEEE
T ss_pred HhhC--CeEEEEEe
Confidence 8876 48886543
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-07 Score=90.41 Aligned_cols=76 Identities=14% Similarity=0.250 Sum_probs=59.8
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc---------cc
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR---------SF 446 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~---------~v 446 (525)
+..+||||| +..+++. |.+|+|+|+|+++++.|++++...++... |. |+
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~ 115 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYI 115 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGGC
T ss_pred CCCeEEEeCCCCCHHHHHHHHC-CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCcccccc
Confidence 345999999 7777775 89999999999999999999887653211 22 12
Q ss_pred -CcccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 447 -GHEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 447 -g~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
..++...+++++.++|||||++++...
T Consensus 116 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 116 IDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp CSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 125678999999999999999998654
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.8e-07 Score=93.47 Aligned_cols=118 Identities=15% Similarity=0.132 Sum_probs=88.6
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc--------ccC
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR--------SFG 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~--------~vg 447 (525)
.+||||| +..+++++ +++++++|+ +++++.|++++++.++.++ |. +..
T Consensus 171 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~ 249 (332)
T 3i53_A 171 GHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWD 249 (332)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEEESCGGGSC
T ss_pred CEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEEehhhccCC
Confidence 3999999 77777764 789999999 9999999999998887654 22 233
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
.+....+++++.++|||||+++|.+...++. . .....++.. ...+++...+.+++.+.++++ ||+++-..
T Consensus 250 ~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~--~-~~~~~d~~~-~~~~~~~~~t~~e~~~ll~~a-Gf~~~~~~ 319 (332)
T 3i53_A 250 DLSAVAILRRCAEAAGSGGVVLVIEAVAGDE--H-AGTGMDLRM-LTYFGGKERSLAELGELAAQA-GLAVRAAH 319 (332)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEECCCC------CCHHHHHHH-HHHHSCCCCCHHHHHHHHHHT-TEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEeecCCCC--C-ccHHHHHHH-HhhCCCCCCCHHHHHHHHHHC-CCEEEEEE
Confidence 4456889999999999999999998877654 1 111122211 124678889999999999996 99987654
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-07 Score=90.90 Aligned_cols=118 Identities=12% Similarity=0.093 Sum_probs=81.0
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC------------CC--Cc----cc--CcccH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE------------RN--DR----SF--GHEYM 451 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~------------d~--D~----~v--g~~~~ 451 (525)
..+||||| +..++++ |++|+|||+|+++++.|+++....++. +. |. ++ ...+.
T Consensus 54 ~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~ 132 (242)
T 3l8d_A 54 EAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEP 132 (242)
T ss_dssp TCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSSCH
T ss_pred CCeEEEEcCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhccCH
Confidence 34999999 7777875 999999999999999999885222110 11 33 11 13577
Q ss_pred HHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcc-cCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 452 EEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYI-FPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYI-FPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
..+++++.++|||||++++.......... ...+...+- .+.....+..++.+.++++ ||+++-..
T Consensus 133 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gf~~~~~~ 198 (242)
T 3l8d_A 133 LRALNEIKRVLKSDGYACIAILGPTAKPR-----ENSYPRLYGKDVVCNTMMPWEFEQLVKEQ-GFKVVDGI 198 (242)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECTTCGGG-----GGGGGGGGTCCCSSCCCCHHHHHHHHHHT-TEEEEEEE
T ss_pred HHHHHHHHHHhCCCeEEEEEEcCCcchhh-----hhhhhhhccccccccCCCHHHHHHHHHHc-CCEEEEee
Confidence 89999999999999999998765433211 122222221 1233457888999999995 99987543
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=98.57 E-value=2.2e-07 Score=87.78 Aligned_cols=119 Identities=16% Similarity=0.035 Sum_probs=75.5
Q ss_pred CCeehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHHHHHcCCCC----C------------------Cc----
Q 043102 398 VREVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIKVKEADLER----N------------------DR---- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r~~~~gl~d----~------------------D~---- 444 (525)
..+||||| +..++++.+ ++|+|||+|+++++.|+++++..++.+ + |.
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 109 (217)
T 3jwh_A 30 ARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVI 109 (217)
T ss_dssp CCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEeeH
Confidence 34999999 777787533 799999999999999999987666542 1 22
Q ss_pred ----ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHH----HHHHhcCCc
Q 043102 445 ----SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRIT----SAMSAASRL 516 (525)
Q Consensus 445 ----~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~----~~~~~a~gl 516 (525)
|+..+.+..+++++.++|||||++++.... .+...-.......-.........+..++. +.++++ ||
T Consensus 110 ~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-Gf 184 (217)
T 3jwh_A 110 EVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNI----EYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERF-AY 184 (217)
T ss_dssp SCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBH----HHHHHTC-----------CCSCBCHHHHHHHHHHHHHHS-SE
T ss_pred HHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCc----ccchhhcccccccccccccccccCHHHHHHHHHHHHHHc-Cc
Confidence 444556789999999999999977664321 11100000000000000011224777777 677774 99
Q ss_pred EEEEE
Q 043102 517 WYNLA 521 (525)
Q Consensus 517 ~V~~~ 521 (525)
+|.+.
T Consensus 185 ~v~~~ 189 (217)
T 3jwh_A 185 NVQFQ 189 (217)
T ss_dssp EEEEC
T ss_pred eEEEE
Confidence 98764
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.3e-07 Score=87.35 Aligned_cols=110 Identities=14% Similarity=-0.001 Sum_probs=81.6
Q ss_pred CCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc----cc--
Q 043102 398 VREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR----SF-- 446 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~----~v-- 446 (525)
..+||||| +..+++.. +++|+|+|+|+++++.|+++++..++..- |. .+
T Consensus 38 ~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 117 (219)
T 3dh0_A 38 GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFH 117 (219)
T ss_dssp TCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEESCGG
T ss_pred CCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeehhhh
Confidence 34999999 77777763 48999999999999999999988775421 22 00
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
...+...+++++.++|||||++++.++...+.... .. .....+.+++.+.++++ ||+++-.
T Consensus 118 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-----~~--------~~~~~~~~~~~~~l~~~-Gf~~~~~ 178 (219)
T 3dh0_A 118 ELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKG-----PP--------PEEVYSEWEVGLILEDA-GIRVGRV 178 (219)
T ss_dssp GCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSS-----CC--------GGGSCCHHHHHHHHHHT-TCEEEEE
T ss_pred hcCCHHHHHHHHHHHhCCCeEEEEEEecccccccC-----Cc--------hhcccCHHHHHHHHHHC-CCEEEEE
Confidence 13467899999999999999999988765543110 11 11234889999999995 9997654
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.55 E-value=9.7e-08 Score=89.66 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=80.2
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH---------c---CCCCC---Cc-----ccCcccH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE---------A---DLERN---DR-----SFGHEYM 451 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~---------~---gl~d~---D~-----~vg~~~~ 451 (525)
..+||||| +..+++. |++|+|+|+|+++++.|+++... . ..... |. .+...+.
T Consensus 53 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~~~~~ 131 (227)
T 3e8s_A 53 PERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALLHQDI 131 (227)
T ss_dssp CSEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCCSSCC
T ss_pred CCEEEEeCCCCCHHHHHHHHC-CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhhhhhH
Confidence 35999999 6777775 99999999999999999988110 0 00000 33 1125678
Q ss_pred HHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhc--ccCC------CCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 452 EEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEY--IFPG------GCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kY--IFPG------g~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
..+++++.++|||||++++.+..........+ ...|.... -+++ .+..+++++.+.++++ ||+++-..
T Consensus 132 ~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-Gf~~~~~~ 207 (227)
T 3e8s_A 132 IELLSAMRTLLVPGGALVIQTLHPWSVADGDY--QDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMA-GLRLVSLQ 207 (227)
T ss_dssp HHHHHHHHHTEEEEEEEEEEECCTTTTCTTCC--SCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHT-TEEEEEEE
T ss_pred HHHHHHHHHHhCCCeEEEEEecCccccCcccc--ccccchhhhhccccCcccceEEEecHHHHHHHHHHc-CCeEEEEe
Confidence 89999999999999999998765432211000 11111110 0111 2456999999999995 99998654
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.6e-07 Score=96.86 Aligned_cols=121 Identities=13% Similarity=0.097 Sum_probs=86.2
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC-------------------Cc--------
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN-------------------DR-------- 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-------------------D~-------- 444 (525)
.+||||| ++.+++++ +++|+++|+ +++++.|++++++.++.++ |.
T Consensus 181 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh 259 (363)
T 3dp7_A 181 KRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLD 259 (363)
T ss_dssp SEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESCST
T ss_pred CEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEechhh
Confidence 4999999 77888764 789999999 9999999999877665332 22
Q ss_pred ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhh----cccCCCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 445 SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKE----YIFPGGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 445 ~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~k----YIFPGg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
+...++...+++++.++|||||+++|.+...++...........+... ....++...+.+++.+.++++ ||+++-
T Consensus 260 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~A-Gf~~v~ 338 (363)
T 3dp7_A 260 CFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENA-GLEVEE 338 (363)
T ss_dssp TSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTT-TEEESC
T ss_pred hCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHc-CCeEEE
Confidence 123445678899999999999999999887766432210000111111 123356678999999999996 998764
Q ss_pred E
Q 043102 521 A 521 (525)
Q Consensus 521 ~ 521 (525)
.
T Consensus 339 ~ 339 (363)
T 3dp7_A 339 I 339 (363)
T ss_dssp C
T ss_pred E
Confidence 3
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=2e-07 Score=89.90 Aligned_cols=122 Identities=16% Similarity=0.129 Sum_probs=84.0
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc----cc--C
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR----SF--G 447 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~----~v--g 447 (525)
+..+||||| +..+++. +.+|+|+|+|+++++.|++++++.++..- |. .+ .
T Consensus 21 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 99 (239)
T 1xxl_A 21 AEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHH 99 (239)
T ss_dssp TTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred CCCEEEEEccCcCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCchhh
Confidence 345999999 6677765 78999999999999999999887665321 22 01 1
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccC-CCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFP-GGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFP-Gg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
..+...+++++.++|||||++++.....++.... ......+....-| .....+..++.+.++++ ||++....
T Consensus 100 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a-Gf~~~~~~ 172 (239)
T 1xxl_A 100 FSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVL--DEFVNHLNRLRDPSHVRESSLSEWQAMFSAN-QLAYQDIQ 172 (239)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHH--HHHHHHHHHHHCTTCCCCCBHHHHHHHHHHT-TEEEEEEE
T ss_pred ccCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhH--HHHHHHHHHhccccccCCCCHHHHHHHHHHC-CCcEEEEE
Confidence 2467899999999999999999987765543210 0011111111112 23456899999999995 99876543
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.54 E-value=4.9e-08 Score=100.48 Aligned_cols=112 Identities=19% Similarity=0.182 Sum_probs=79.9
Q ss_pred cCCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc--------
Q 043102 396 FKVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR-------- 444 (525)
Q Consensus 396 f~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~-------- 444 (525)
++..+||||| ++.+++...++|+|||+|+ |++.|++++++.|+.++ |.
T Consensus 49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 127 (348)
T 2y1w_A 49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGY 127 (348)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEECCCBT
T ss_pred CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCceeEEEEeCchh
Confidence 3456999999 7777775335999999995 99999999998887544 22
Q ss_pred ccCcccHHHHHHHHHhccCCCcEEEEEEecCC------CcchhcccCchhHHhhcccCCCCCCCHHHHHH
Q 043102 445 SFGHEYMEEFFGCCESLIAKDGLFVLQFISIP------DERYNEFRLSSDFMKEYIFPGGCLPSLSRITS 508 (525)
Q Consensus 445 ~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~------~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~ 508 (525)
|+..+.+...+..+.++|||||+++++..+.. +..+.......+|..+.+|||+.++++.++..
T Consensus 128 ~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~i~~~~~~~~~~~~~~~w~~~~~~g~d~~~l~~~~~ 197 (348)
T 2y1w_A 128 MLFNERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAV 197 (348)
T ss_dssp TBTTTSHHHHHHHGGGGEEEEEEEESCEEEEEEEEECCHHHHHHHHHHHGGGCCSCBTTBCCGGGHHHHH
T ss_pred cCChHHHHHHHHHHHhhcCCCeEEEEecCcEEEEEecchHHhhhhccccCcccccccCcccHHHhhhHHH
Confidence 33446678889999999999999997654322 11121111123444456899999999988753
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.9e-07 Score=94.48 Aligned_cols=76 Identities=8% Similarity=0.055 Sum_probs=58.2
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC-----------------------------CC-
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE-----------------------------RN- 442 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~-----------------------------d~- 442 (525)
.+||||| +..+++..+++|+|||+|++|++.|++++.+.++. +.
T Consensus 50 ~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~~ 129 (302)
T 2vdw_A 50 RKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGK 129 (302)
T ss_dssp CEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSSC
T ss_pred CeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccCCC
Confidence 4999999 44555554689999999999999999998765421 01
Q ss_pred -Cc-------c--cCcccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 443 -DR-------S--FGHEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 443 -D~-------~--vg~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
|. | ...++...+++++.++|||||++++.++.
T Consensus 130 FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 130 FNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp EEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 33 1 12246789999999999999999998764
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.8e-07 Score=95.97 Aligned_cols=121 Identities=17% Similarity=0.161 Sum_probs=85.3
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC------C----------c--------ccC
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN------D----------R--------SFG 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D----------~--------~vg 447 (525)
.+||||| ++.+++++ +++++++|+ +++++.|+++++..++.++ | . ++.
T Consensus 184 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~ 262 (374)
T 1qzz_A 184 RHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWS 262 (374)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSC
T ss_pred CEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEeccccCCC
Confidence 4999999 77778764 789999999 9999999999988877644 2 2 223
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEe--cCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFI--SIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i--~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
.+....+++++.++|||||++++.++ ..++..........++. ...++++...+.+++.+.++++ ||+++-..
T Consensus 263 ~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ll~~a-Gf~~~~~~ 337 (374)
T 1qzz_A 263 DEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLR-MLTFMGGRVRTRDEVVDLAGSA-GLALASER 337 (374)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHH-HHHHHSCCCCCHHHHHHHHHTT-TEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchH-HHHhCCCcCCCHHHHHHHHHHC-CCceEEEE
Confidence 33446899999999999999999887 65543211111111111 1235678899999999999995 99987544
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=98.52 E-value=5.1e-08 Score=94.17 Aligned_cols=119 Identities=13% Similarity=0.137 Sum_probs=76.7
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCC---------------C--Cc-----cc-Cc
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLER---------------N--DR-----SF-GH 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d---------------~--D~-----~v-g~ 448 (525)
..+||||| +..++++ +++|+|+|+|++|++.|++++ ..+... . |. .+ ..
T Consensus 40 ~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 117 (263)
T 2yqz_A 40 EPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLV 117 (263)
T ss_dssp CCEEEEETCTTSTTHHHHHTT-TCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred CCEEEEeCCcCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCCCCCCeeEEEECCchhhc
Confidence 45999999 7788875 899999999999999999987 211110 0 22 01 12
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCC-cc-hhcccCchhHHhhcccC---CCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPD-ER-YNEFRLSSDFMKEYIFP---GGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~-~~-~~~~~~~~~fi~kYIFP---Gg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
.+...+++++.++|||||++++. +...+ .. +.-......++...-+| ....++..++.+.++++ ||++..
T Consensus 118 ~~~~~~l~~~~~~L~pgG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gf~~~~ 192 (263)
T 2yqz_A 118 PDWPKVLAEAIRVLKPGGALLEG-WDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRL-GLKPRT 192 (263)
T ss_dssp TTHHHHHHHHHHHEEEEEEEEEE-EEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHT-TCCCEE
T ss_pred CCHHHHHHHHHHHCCCCcEEEEE-ecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHc-CCCcce
Confidence 36789999999999999999987 32221 11 00000112223332233 22345677888888885 898654
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=98.51 E-value=3.5e-07 Score=86.46 Aligned_cols=119 Identities=13% Similarity=0.100 Sum_probs=74.5
Q ss_pred CCeehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHHHHHcCCCC----C------------------Cc----
Q 043102 398 VREVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIKVKEADLER----N------------------DR---- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r~~~~gl~d----~------------------D~---- 444 (525)
..+||||| +..++++.+ ++|+|||+|+++++.|+++++..++.+ + |.
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 109 (219)
T 3jwg_A 30 AKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVI 109 (219)
T ss_dssp CCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEEH
Confidence 35999999 677777533 799999999999999999987655432 1 33
Q ss_pred ----ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHH----HHHHhcCCc
Q 043102 445 ----SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRIT----SAMSAASRL 516 (525)
Q Consensus 445 ----~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~----~~~~~a~gl 516 (525)
|+..+.+..+++++.++|||||++++.........+... .... .+. .......+..++. +.++++ ||
T Consensus 110 ~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~-~~~~-~~~--~~~~~~~~~~~l~~~~~~l~~~~-Gf 184 (219)
T 3jwg_A 110 EVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNL-FEGN-LRH--RDHRFEWTRKEFQTWAVKVAEKY-GY 184 (219)
T ss_dssp SCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-------GG--GCCTTSBCHHHHHHHHHHHHHHH-TE
T ss_pred HHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhccc-Cccc-ccc--cCceeeecHHHHHHHHHHHHHHC-Cc
Confidence 444456689999999999999966553321111111000 0000 000 0011224677777 667775 89
Q ss_pred EEEEE
Q 043102 517 WYNLA 521 (525)
Q Consensus 517 ~V~~~ 521 (525)
+|...
T Consensus 185 ~v~~~ 189 (219)
T 3jwg_A 185 SVRFL 189 (219)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98765
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.5e-07 Score=96.20 Aligned_cols=120 Identities=14% Similarity=0.047 Sum_probs=82.0
Q ss_pred CCCeehhhc------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHc-----C-CC----------------------
Q 043102 397 KVREVIFLG------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEA-----D-LE---------------------- 440 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~-----g-l~---------------------- 440 (525)
+..+||||| ++.+++. .+++|+|+|+|++|++.|+++++.. | +.
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 445999999 6777776 3679999999999999999997643 2 11
Q ss_pred -CC--Cc----c-c-CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHH
Q 043102 441 -RN--DR----S-F-GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMS 511 (525)
Q Consensus 441 -d~--D~----~-v-g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~ 511 (525)
+. |. . + ...+...+++++.++|||||++++.++........... ....+ +....+...+..++.+.++
T Consensus 163 ~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~ll~ 239 (383)
T 4fsd_A 163 PDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQ-QDPIL--YGECLGGALYLEDFRRLVA 239 (383)
T ss_dssp CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHH-HCHHH--HHTTCTTCCBHHHHHHHHH
T ss_pred CCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHh-hhHHH--hhcccccCCCHHHHHHHHH
Confidence 11 22 0 0 12578999999999999999999988765432211111 11111 2223345578899999999
Q ss_pred hcCCcEEEE
Q 043102 512 AASRLWYNL 520 (525)
Q Consensus 512 ~a~gl~V~~ 520 (525)
++ ||+++-
T Consensus 240 ~a-GF~~v~ 247 (383)
T 4fsd_A 240 EA-GFRDVR 247 (383)
T ss_dssp HT-TCCCEE
T ss_pred HC-CCceEE
Confidence 96 897553
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=5.1e-07 Score=92.59 Aligned_cols=118 Identities=13% Similarity=0.073 Sum_probs=86.2
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc--------ccC
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR--------SFG 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~--------~vg 447 (525)
.+||||| +..+++++ +++|+++|+ +++++.|++++++.++.++ |. ++.
T Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~ 270 (359)
T 1x19_A 192 KKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSAN 270 (359)
T ss_dssp CEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSC
T ss_pred CEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEechhccCC
Confidence 4999999 77778764 789999999 9999999999998887654 22 223
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcc--cCCCCC----CCHHHHHHHHHhcCCcEEEEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYI--FPGGCL----PSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYI--FPGg~L----Psl~~i~~~~~~a~gl~V~~~ 521 (525)
.+....+++++.++|||||++++.+...++.... ....+. .++ ..++.. .+.+++.+.++++ ||+++-.
T Consensus 271 d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~---~~~~~~-~~~~~~~~g~~~~~~~t~~e~~~ll~~a-Gf~~v~~ 345 (359)
T 1x19_A 271 EQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENP---NFDYLS-HYILGAGMPFSVLGFKEQARYKEILESL-GYKDVTM 345 (359)
T ss_dssp HHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSC---CHHHHH-HHGGGGGSSCCCCCCCCGGGHHHHHHHH-TCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCc---hHHHHH-HHHHhcCCCCcccCCCCHHHHHHHHHHC-CCceEEE
Confidence 3447889999999999999999988776653110 011111 111 233444 8999999999996 9997655
Q ss_pred E
Q 043102 522 V 522 (525)
Q Consensus 522 ~ 522 (525)
.
T Consensus 346 ~ 346 (359)
T 1x19_A 346 V 346 (359)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.49 E-value=6e-08 Score=93.39 Aligned_cols=113 Identities=14% Similarity=0.147 Sum_probs=80.1
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCC---------------CC-C-Cc--------cc
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADL---------------ER-N-DR--------SF 446 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl---------------~d-~-D~--------~v 446 (525)
..+||||| +..++++.+++|+|+|+|+++++.|++++...+. .+ . |. |+
T Consensus 80 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 159 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHL 159 (241)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGS
T ss_pred CCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhhC
Confidence 45999999 6666766566999999999999999999866421 00 0 22 33
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
..+.+..+++++.++|||||++++.+........ ... ..+....+..++.+.++++ ||+++-..
T Consensus 160 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------~~~--~~~~~~~~~~~~~~~l~~a-Gf~~~~~~ 223 (241)
T 2ex4_A 160 TDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI---------LDD--VDSSVCRDLDVVRRIICSA-GLSLLAEE 223 (241)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEE---------EET--TTTEEEEBHHHHHHHHHHT-TCCEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcce---------ecc--cCCcccCCHHHHHHHHHHc-CCeEEEee
Confidence 3445779999999999999999998765543110 000 1222345899999999995 99887653
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=98.49 E-value=2.3e-07 Score=88.24 Aligned_cols=122 Identities=14% Similarity=0.111 Sum_probs=79.9
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCC-----------CCC--Cc----cc--CcccH
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADL-----------ERN--DR----SF--GHEYM 451 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl-----------~d~--D~----~v--g~~~~ 451 (525)
+..+||||| +..+++. +.+|+|||+|+++++.|+++... ++ .+. |. ++ ...+.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~-~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 119 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRLKD-GITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDP 119 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHSCS-CEEEEESCGGGCCCSSCEEEEEEESCGGGCSSH
T ss_pred CCCcEEEECCCCCHHHHHHHHh-CCcEEEEeCCHHHHHHHHHhhhC-CeEEEEccHHHcCcCCcccEEEEhhHHHhhcCH
Confidence 455999999 6677764 78999999999999999998642 11 111 43 11 12467
Q ss_pred HHHHHHHH-hccCCCcEEEEEEecCCCcchh-----cc-cCchhHHhhc-ccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 452 EEFFGCCE-SLIAKDGLFVLQFISIPDERYN-----EF-RLSSDFMKEY-IFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 452 ~~~f~~i~-r~LkpGG~~viq~i~~~~~~~~-----~~-~~~~~fi~kY-IFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
..+++++. ++|||||++++........... .. .....+.... ........+..++.+.++++ ||+++-.
T Consensus 120 ~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gf~~~~~ 196 (250)
T 2p7i_A 120 VALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRA-GLQVTYR 196 (250)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHT-TCEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHC-CCeEEEE
Confidence 89999999 9999999999987643321100 00 0000000000 11223567899999999995 9998754
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1e-07 Score=87.83 Aligned_cols=76 Identities=12% Similarity=0.064 Sum_probs=59.4
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc---ccC---
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR---SFG--- 447 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~---~vg--- 447 (525)
+.+||||| ++.+|++ +++|+|||+|+++++.|++++++.|+..- |. ..+
T Consensus 23 ~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~~ 101 (185)
T 3mti_A 23 ESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYLP 101 (185)
T ss_dssp TCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC---
T ss_pred CCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCCC
Confidence 35999999 7888886 99999999999999999999988776211 22 111
Q ss_pred ---------cccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 448 ---------HEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 448 ---------~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
......+++++.++|||||++++....
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 102 SADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp --------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 134457889999999999999986553
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.6e-07 Score=94.15 Aligned_cols=121 Identities=19% Similarity=0.177 Sum_probs=89.4
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC-------------------Cc-------
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN-------------------DR------- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-------------------D~------- 444 (525)
..+||||| +..+++++ +++++++|+ +++++.|++++++.++.++ |.
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vl 258 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCL 258 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCG
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccc
Confidence 45999999 67777764 689999999 8899999999988776543 22
Q ss_pred -ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhc-ccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 445 -SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNE-FRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 445 -~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~-~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
+...++...+++++.++|||||++++.+...++..... .....++.....++++...+.+++.+.++++ ||+++-
T Consensus 259 h~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a-Gf~~~~ 335 (352)
T 3mcz_A 259 HYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDA-GLAVGE 335 (352)
T ss_dssp GGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHT-TCEEEE
T ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHC-CCceee
Confidence 22334568999999999999999999988876643110 0011122222235788899999999999995 999875
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=6.1e-08 Score=93.87 Aligned_cols=112 Identities=19% Similarity=0.223 Sum_probs=68.5
Q ss_pred Ceehhhc------HHHHHHh-cCCEEEEEcCC-hHHHHHH---HHHHHHcCCCCC-----Cc--------------cc--
Q 043102 399 REVIFLG------TIEVVKR-TGCKYTGITLA-EKQLKYA---GIKVKEADLERN-----DR--------------SF-- 446 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~-~G~~VtGIdlS-~eql~~A---r~r~~~~gl~d~-----D~--------------~v-- 446 (525)
.+||||| ++.+|++ .+++|+|||+| +.|++.| ++++++.|+.+. |. .+
T Consensus 26 ~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~~~ 105 (225)
T 3p2e_A 26 RVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISILF 105 (225)
T ss_dssp EEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEEES
T ss_pred CEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEEeC
Confidence 3899999 7778854 58899999999 5555555 888887777532 22 00
Q ss_pred C--------cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHH-----HHHHHHHhc
Q 043102 447 G--------HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLS-----RITSAMSAA 513 (525)
Q Consensus 447 g--------~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~-----~i~~~~~~a 513 (525)
. ....+.+++++.|+|||||++++. ++..+. ++ ..++..+ .+| .++.. ++.+.++++
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~-~~~~~~-~~----~~~~~~~-~~~---~~~~~~~~~~el~~~l~~a 175 (225)
T 3p2e_A 106 PWGTLLEYVIKPNRDILSNVADLAKKEAHFEFV-TTYSDS-YE----EAEIKKR-GLP---LLSKAYFLSEQYKAELSNS 175 (225)
T ss_dssp CCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEE-ECCCC-----------------------CCHHHHHSHHHHHHHHHH
T ss_pred CCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEE-Eecccc-ch----hchhhhc-CCC---CCChhhcchHHHHHHHHHc
Confidence 0 012357899999999999999993 333332 21 1111111 122 12322 488888885
Q ss_pred CCcEEEEE
Q 043102 514 SRLWYNLA 521 (525)
Q Consensus 514 ~gl~V~~~ 521 (525)
||+|.-.
T Consensus 176 -Gf~v~~~ 182 (225)
T 3p2e_A 176 -GFRIDDV 182 (225)
T ss_dssp -TCEEEEE
T ss_pred -CCCeeee
Confidence 9998754
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.4e-07 Score=88.48 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=73.3
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----C----------c---ccCcccHHH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----D----------R---SFGHEYMEE 453 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D----------~---~vg~~~~~~ 453 (525)
..+||||| ++.+++...++|+|+|+|+++++.|+++++..++.+- | . ......+..
T Consensus 61 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~~~~ 140 (205)
T 3grz_A 61 PLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEILLD 140 (205)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHHHHH
Confidence 34999999 6777775234999999999999999999998876532 2 2 122455788
Q ss_pred HHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 454 FFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 454 ~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
+++++.++|||||++++..+... +..++.+.++++ ||++.-.
T Consensus 141 ~l~~~~~~L~~gG~l~~~~~~~~-------------------------~~~~~~~~~~~~-Gf~~~~~ 182 (205)
T 3grz_A 141 LIPQLDSHLNEDGQVIFSGIDYL-------------------------QLPKIEQALAEN-SFQIDLK 182 (205)
T ss_dssp HGGGSGGGEEEEEEEEEEEEEGG-------------------------GHHHHHHHHHHT-TEEEEEE
T ss_pred HHHHHHHhcCCCCEEEEEecCcc-------------------------cHHHHHHHHHHc-CCceEEe
Confidence 99999999999999999655321 355667777774 7877654
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=5.9e-07 Score=82.84 Aligned_cols=109 Identities=7% Similarity=-0.027 Sum_probs=77.8
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc--------cc
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR--------SF 446 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~--------~v 446 (525)
+..+||||| +..+++. |++|+|+|+|+++++.|+++++..++..- |. |+
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~ 110 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMFL 110 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEEEEEEESCGGGS
T ss_pred CCCeEEEEcCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCceEEEEcchhhhC
Confidence 345999999 7778876 99999999999999999999887665221 22 34
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
..++...+++++.++|||||++++.+...++. +. .. .+..+..+.+++.+.+++ |++.-.
T Consensus 111 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~-~~---~~--------~~~~~~~~~~~l~~~~~~---f~~~~~ 170 (199)
T 2xvm_A 111 EAKTIPGLIANMQRCTKPGGYNLIVAAMDTAD-YP---CT--------VGFPFAFKEGELRRYYEG---WERVKY 170 (199)
T ss_dssp CGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSS-SC---CC--------SCCSCCBCTTHHHHHTTT---SEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEEeeccCC-cC---CC--------CCCCCccCHHHHHHHhcC---CeEEEe
Confidence 45588999999999999999988765543332 11 00 122345577788877754 676543
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.46 E-value=4e-07 Score=88.93 Aligned_cols=80 Identities=8% Similarity=0.096 Sum_probs=66.7
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc------------------
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN------DR------------------ 444 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------------------ 444 (525)
+..+||||| ++.+|+.. +++|+|||+|+++++.|++++++.|+.++ |+
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~ 142 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFI 142 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence 345999999 77888764 68999999999999999999999998765 22
Q ss_pred ccCcccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 445 SFGHEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 445 ~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
......+..+++++.++|||||+++++.+...
T Consensus 143 d~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~ 174 (248)
T 3tfw_A 143 DADKPNNPHYLRWALRYSRPGTLIIGDNVVRD 174 (248)
T ss_dssp CSCGGGHHHHHHHHHHTCCTTCEEEEECCSGG
T ss_pred CCchHHHHHHHHHHHHhcCCCeEEEEeCCCcC
Confidence 11356789999999999999999999887654
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.2e-07 Score=91.50 Aligned_cols=78 Identities=13% Similarity=0.138 Sum_probs=65.5
Q ss_pred Ceehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCC-CC------Cc-----------------cc
Q 043102 399 REVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLE-RN------DR-----------------SF 446 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~-d~------D~-----------------~v 446 (525)
++||||| ++.+|+.. +++|++||+|+++++.|++++++.|+. ++ |+ ..
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~ 137 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV 137 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence 3899999 77888753 789999999999999999999999987 44 22 12
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
...++..|++++.++|||||+++++.+...
T Consensus 138 ~~~~~~~~l~~~~~~LkpGG~lv~dn~~~~ 167 (221)
T 3dr5_A 138 SPMDLKALVDAAWPLLRRGGALVLADALLD 167 (221)
T ss_dssp CTTTHHHHHHHHHHHEEEEEEEEETTTTGG
T ss_pred cHHHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence 356789999999999999999999877653
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=98.43 E-value=5e-07 Score=85.74 Aligned_cols=75 Identities=11% Similarity=0.084 Sum_probs=61.3
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc-------------cc-CcccH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------DR-------------SF-GHEYM 451 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~-------------~v-g~~~~ 451 (525)
..+||||| ++.+|+. +++|+|||+|+++++.|+++++..|+.++ |. .+ +.-+.
T Consensus 56 ~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 134 (204)
T 3njr_A 56 GELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGGSQ 134 (204)
T ss_dssp TCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCCCH
T ss_pred CCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcccH
Confidence 45999999 7888887 99999999999999999999998888743 22 11 11245
Q ss_pred HHHHHHHHhccCCCcEEEEEEec
Q 043102 452 EEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
+ +++++.++|||||++++..++
T Consensus 135 ~-~l~~~~~~LkpgG~lv~~~~~ 156 (204)
T 3njr_A 135 A-LYDRLWEWLAPGTRIVANAVT 156 (204)
T ss_dssp H-HHHHHHHHSCTTCEEEEEECS
T ss_pred H-HHHHHHHhcCCCcEEEEEecC
Confidence 6 999999999999999997664
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.43 E-value=8.2e-07 Score=83.21 Aligned_cols=76 Identities=16% Similarity=0.189 Sum_probs=60.9
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc---ccCccc
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR---SFGHEY 450 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~---~vg~~~ 450 (525)
..+||||| ++.+++.. +++|+|+|+|+++++.|+++++..|+..- |. .....+
T Consensus 41 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~ 120 (204)
T 3e05_A 41 DLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGSGGM 120 (204)
T ss_dssp TCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCCTTC
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCCCcC
Confidence 45999999 77888763 48999999999999999999988776311 22 112347
Q ss_pred HHHHHHHHHhccCCCcEEEEEEe
Q 043102 451 MEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~i 473 (525)
...+++++.++|||||++++...
T Consensus 121 ~~~~l~~~~~~LkpgG~l~~~~~ 143 (204)
T 3e05_A 121 LEEIIDAVDRRLKSEGVIVLNAV 143 (204)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEEC
T ss_pred HHHHHHHHHHhcCCCeEEEEEec
Confidence 89999999999999999999654
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=4.8e-07 Score=85.84 Aligned_cols=80 Identities=15% Similarity=0.202 Sum_probs=66.6
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc------------------
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN------DR------------------ 444 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------------------ 444 (525)
+..+||||| ++.+|+.. +++|+|+|+|+++++.|++++++.|+.++ |.
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v 137 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI 137 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence 345999999 78888764 78999999999999999999999998764 22
Q ss_pred --ccCcccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 445 --SFGHEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 445 --~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
......++.+|+.+.++|||||+++++.+...
T Consensus 138 ~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 171 (223)
T 3duw_A 138 FIDADKQNNPAYFEWALKLSRPGTVIIGDNVVRE 171 (223)
T ss_dssp EECSCGGGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred EEcCCcHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 11245789999999999999999999877654
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=4.5e-07 Score=92.66 Aligned_cols=121 Identities=17% Similarity=0.255 Sum_probs=87.2
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC------C----------c--------ccC
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN------D----------R--------SFG 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D----------~--------~vg 447 (525)
.+||||| +..++++. +++++++|+ +++++.|+++++..++.++ | . ++.
T Consensus 185 ~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~ 263 (360)
T 1tw3_A 185 RHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWP 263 (360)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSC
T ss_pred cEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEEcccccCCC
Confidence 4999999 67777764 689999999 9999999999988877644 2 2 223
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEec-CCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFIS-IPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~-~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
.++...+++++.++|||||++++.+.. .++..........++. ...++|+...+.+++.+.++++ ||+++-..
T Consensus 264 ~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~e~~~ll~~a-Gf~~~~~~ 337 (360)
T 1tw3_A 264 DHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLR-MLVFLGGALRTREKWDGLAASA-GLVVEEVR 337 (360)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHH-HHHHHSCCCCBHHHHHHHHHHT-TEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHH-HhhhcCCcCCCHHHHHHHHHHC-CCeEEEEE
Confidence 334468999999999999999998877 5543110000111111 1124578889999999999996 99987543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.1e-07 Score=88.78 Aligned_cols=122 Identities=14% Similarity=0.152 Sum_probs=78.2
Q ss_pred CCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCC------------CC--Cc----c-c-Ccc
Q 043102 397 KVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLE------------RN--DR----S-F-GHE 449 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~------------d~--D~----~-v-g~~ 449 (525)
+..+||||| +..++++ |+ +|+|+|+|+++++.|+++....++. +. |. . + ...
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 121 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVE 121 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGCS
T ss_pred CCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEeccccccc
Confidence 345999999 6777775 77 9999999999999999986432211 11 33 1 1 124
Q ss_pred cHHHHHHHHHhccCCCcEEEEEEecCC-----Ccchh------------cc----cCchhHHhhcccCCCCCCCHHHHHH
Q 043102 450 YMEEFFGCCESLIAKDGLFVLQFISIP-----DERYN------------EF----RLSSDFMKEYIFPGGCLPSLSRITS 508 (525)
Q Consensus 450 ~~~~~f~~i~r~LkpGG~~viq~i~~~-----~~~~~------------~~----~~~~~fi~kYIFPGg~LPsl~~i~~ 508 (525)
+...+++++.++|||||++++...... ...+. .+ .....|+...+ ..+..+.+++.+
T Consensus 122 ~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~t~~~~~~ 199 (243)
T 3bkw_A 122 DVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGV--VKHHRTVGTTLN 199 (243)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSC--CEEECCHHHHHH
T ss_pred hHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCce--EEEeccHHHHHH
Confidence 688999999999999999999764210 00000 00 00011111100 112258999999
Q ss_pred HHHhcCCcEEEEEE
Q 043102 509 AMSAASRLWYNLAV 522 (525)
Q Consensus 509 ~~~~a~gl~V~~~~ 522 (525)
.++++ ||+++-..
T Consensus 200 ~l~~a-GF~~~~~~ 212 (243)
T 3bkw_A 200 ALIRS-GFAIEHVE 212 (243)
T ss_dssp HHHHT-TCEEEEEE
T ss_pred HHHHc-CCEeeeec
Confidence 99995 99987654
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.42 E-value=2.3e-07 Score=89.26 Aligned_cols=114 Identities=11% Similarity=0.114 Sum_probs=78.9
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcC-------------CCCC--Cc--------ccCc
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEAD-------------LERN--DR--------SFGH 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~g-------------l~d~--D~--------~vg~ 448 (525)
..+||||| +..++++...+|+|+|+|+++++.|+++++... +.+. |. |+..
T Consensus 94 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 173 (254)
T 1xtp_A 94 TSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTD 173 (254)
T ss_dssp CSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCH
T ss_pred CCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhhhCCH
Confidence 35999999 666776645689999999999999999875321 0111 33 3333
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
++...+++++.++|||||++++.+.......+. . .. .......+..++.+.++++ ||+++-..
T Consensus 174 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--------~-~~-~~~~~~~~~~~~~~~l~~a-Gf~~~~~~ 236 (254)
T 1xtp_A 174 ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFL--------V-DK-EDSSLTRSDIHYKRLFNES-GVRVVKEA 236 (254)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEE--------E-ET-TTTEEEBCHHHHHHHHHHH-TCCEEEEE
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCCCcccce--------e-cc-cCCcccCCHHHHHHHHHHC-CCEEEEee
Confidence 568899999999999999999987644332211 0 00 1122345889999999996 99887543
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.5e-07 Score=94.22 Aligned_cols=43 Identities=19% Similarity=0.367 Sum_probs=34.4
Q ss_pred cCCCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcC
Q 043102 396 FKVREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEAD 438 (525)
Q Consensus 396 f~~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~g 438 (525)
++..+||||| ++.+|+++ +++|+|||+|+++++.|+++++..+
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~ 94 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYL 94 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhh
Confidence 4556999999 77888875 6899999999999999999976544
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.9e-07 Score=91.66 Aligned_cols=116 Identities=19% Similarity=0.218 Sum_probs=77.5
Q ss_pred CCeehhhc------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHc-CCCCC--------------C------c----
Q 043102 398 VREVIFLG------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEA-DLERN--------------D------R---- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~-gl~d~--------------D------~---- 444 (525)
..+||||| +..++++ .+++|+|||+|++|++.|+++++.. +...+ + .
T Consensus 37 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 116 (299)
T 3g5t_A 37 RKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDM 116 (299)
T ss_dssp CSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEEE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCeeE
Confidence 35999999 7788863 4899999999999999999998775 22221 2 1
Q ss_pred -----ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcc----cCCCCC--CCHHHHHHHHHhc
Q 043102 445 -----SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYI----FPGGCL--PSLSRITSAMSAA 513 (525)
Q Consensus 445 -----~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYI----FPGg~L--Psl~~i~~~~~~a 513 (525)
.+..-+...+++++.++|||||++++.....+. +..+......+.++. ..+.+. |....+...+++.
T Consensus 117 V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~~~~l~~~ 194 (299)
T 3g5t_A 117 ITAVECAHWFDFEKFQRSAYANLRKDGTIAIWGYADPI--FPDYPEFDDLMIEVPYGKQGLGPYWEQPGRSRLRNMLKDS 194 (299)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEEEEEE--CTTCGGGTTHHHHHHHCTTTTGGGSCTTHHHHHHTTTTTC
T ss_pred EeHhhHHHHhCHHHHHHHHHHhcCCCcEEEEEecCCcc--ccCcHHHHHHHHHhccCcccccchhhchhhHHHHHhhhcc
Confidence 011117899999999999999999995554321 111112233444443 223334 6677777777774
Q ss_pred CCc
Q 043102 514 SRL 516 (525)
Q Consensus 514 ~gl 516 (525)
||
T Consensus 195 -gf 196 (299)
T 3g5t_A 195 -HL 196 (299)
T ss_dssp -CC
T ss_pred -CC
Confidence 77
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.6e-07 Score=88.82 Aligned_cols=118 Identities=14% Similarity=0.031 Sum_probs=79.2
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCC-------CCC------------Cc--------
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADL-------ERN------------DR-------- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl-------~d~------------D~-------- 444 (525)
..+||||| +..+++. +.+|+|||+|+++++.|++++...++ .+. |.
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~ 135 (245)
T 3ggd_A 57 ELPLIDFACGNGTQTKFLSQF-FPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFH 135 (245)
T ss_dssp TSCEEEETCTTSHHHHHHHHH-SSCEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSST
T ss_pred CCeEEEEcCCCCHHHHHHHHh-CCCEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcchhh
Confidence 34899999 7788875 67999999999999999998732221 110 12
Q ss_pred ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchh-----cccCch----hHHhhcccCCCCCCCHHHHHHHHHhcCC
Q 043102 445 SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYN-----EFRLSS----DFMKEYIFPGGCLPSLSRITSAMSAASR 515 (525)
Q Consensus 445 ~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~-----~~~~~~----~fi~kYIFPGg~LPsl~~i~~~~~~a~g 515 (525)
++..++...+++++.++|||||++++.++...+..+. .+.... ..++.-..|+. .+.+++.+.+ .|
T Consensus 136 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---aG 210 (245)
T 3ggd_A 136 HIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGI--FTAEDIELYF---PD 210 (245)
T ss_dssp TSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCC--CCHHHHHHHC---TT
T ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCc--cCHHHHHHHh---CC
Confidence 3445578999999999999999998888766543221 001111 12222223332 4788888887 49
Q ss_pred cEEEEE
Q 043102 516 LWYNLA 521 (525)
Q Consensus 516 l~V~~~ 521 (525)
|++...
T Consensus 211 f~~~~~ 216 (245)
T 3ggd_A 211 FEILSQ 216 (245)
T ss_dssp EEEEEE
T ss_pred CEEEec
Confidence 998653
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.6e-07 Score=96.55 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=79.3
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-------------------Cc--------
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-------------------DR-------- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-------------------D~-------- 444 (525)
..+||||| +..++++ |++|+|||+|++|++.|+++ ++... |.
T Consensus 108 ~~~VLDiGcG~G~~~~~l~~~-g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~ 182 (416)
T 4e2x_A 108 DPFIVEIGCNDGIMLRTIQEA-GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRTEGPANVIYAANTLC 182 (416)
T ss_dssp SCEEEEETCTTTTTHHHHHHT-TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHHHCCEEEEEEESCGG
T ss_pred CCEEEEecCCCCHHHHHHHHc-CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccCCCCEEEEEECChHH
Confidence 34999999 7777775 89999999999999999987 22111 33
Q ss_pred ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 445 SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 445 ~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
|+ .+...+++++.++|||||+++++......- . ....|-.. ..+.....+..++.+.++++ ||++.-..
T Consensus 183 h~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~-~----~~~~~~~~-~~~~~~~~s~~~l~~ll~~a-Gf~~~~~~ 251 (416)
T 4e2x_A 183 HI--PYVQSVLEGVDALLAPDGVFVFEDPYLGDI-V----AKTSFDQI-FDEHFFLFSATSVQGMAQRC-GFELVDVQ 251 (416)
T ss_dssp GC--TTHHHHHHHHHHHEEEEEEEEEEEECHHHH-H----HHTCGGGC-STTCCEECCHHHHHHHHHHT-TEEEEEEE
T ss_pred hc--CCHHHHHHHHHHHcCCCeEEEEEeCChHHh-h----hhcchhhh-hhhhhhcCCHHHHHHHHHHc-CCEEEEEE
Confidence 33 478999999999999999999976532210 0 01111111 12455668999999999995 99987543
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=98.40 E-value=5.6e-07 Score=89.18 Aligned_cols=114 Identities=14% Similarity=0.043 Sum_probs=75.8
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH-----------------c----------------
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE-----------------A---------------- 437 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~-----------------~---------------- 437 (525)
+..+||||| ++.+++..+.+|+|||+|++|++.|++++++ .
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence 345999999 3334444578999999999999999986532 1
Q ss_pred -------CCCC-----------C--Cc--------ccC--cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCch
Q 043102 438 -------DLER-----------N--DR--------SFG--HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSS 487 (525)
Q Consensus 438 -------gl~d-----------~--D~--------~vg--~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~ 487 (525)
.+.. . |. ++. .+++..+++++.++|||||++++...... ..+.. .
T Consensus 151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~-~~~~~---~- 225 (289)
T 2g72_A 151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEE-SWYLA---G- 225 (289)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESC-CEEEE---T-
T ss_pred hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCc-ceEEc---C-
Confidence 1111 0 33 222 33688999999999999999999754322 11110 0
Q ss_pred hHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 488 DFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 488 ~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
...++ ....+.+++.+.++++ ||++...
T Consensus 226 ----~~~~~-~~~~~~~~l~~~l~~a-Gf~~~~~ 253 (289)
T 2g72_A 226 ----EARLT-VVPVSEEEVREALVRS-GYKVRDL 253 (289)
T ss_dssp ----TEEEE-CCCCCHHHHHHHHHHT-TEEEEEE
T ss_pred ----Ceeee-eccCCHHHHHHHHHHc-CCeEEEe
Confidence 00111 2456899999999995 9988654
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.5e-07 Score=90.94 Aligned_cols=124 Identities=15% Similarity=0.167 Sum_probs=77.9
Q ss_pred CCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCC------------CCC--Cc----cc--Ccc
Q 043102 397 KVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADL------------ERN--DR----SF--GHE 449 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl------------~d~--D~----~v--g~~ 449 (525)
+..+||||| +..+++. |. +|+|+|+|+++++.|++++....+ .+. |. .+ ..+
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 122 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEH-GAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIA 122 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCS
T ss_pred CCCEEEEECCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhh
Confidence 345999999 7777876 66 999999999999999998641111 011 33 10 135
Q ss_pred cHHHHHHHHHhccCCCcEEEEEEecCCC-----cch--hcccCchhH-HhhcccC------------CCCCCCHHHHHHH
Q 043102 450 YMEEFFGCCESLIAKDGLFVLQFISIPD-----ERY--NEFRLSSDF-MKEYIFP------------GGCLPSLSRITSA 509 (525)
Q Consensus 450 ~~~~~f~~i~r~LkpGG~~viq~i~~~~-----~~~--~~~~~~~~f-i~kYIFP------------Gg~LPsl~~i~~~ 509 (525)
+...+++++.++|||||++++....... ..+ ........| ...|.-. ..+..+++++.+.
T Consensus 123 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 202 (253)
T 3g5l_A 123 SFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQT 202 (253)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecCHHHHHHH
Confidence 7899999999999999999997542100 000 000000000 0011000 0122499999999
Q ss_pred HHhcCCcEEEEEE
Q 043102 510 MSAASRLWYNLAV 522 (525)
Q Consensus 510 ~~~a~gl~V~~~~ 522 (525)
++++ ||+++-..
T Consensus 203 l~~a-GF~~~~~~ 214 (253)
T 3g5l_A 203 LLKN-GFQINSVI 214 (253)
T ss_dssp HHHT-TEEEEEEE
T ss_pred HHHc-CCeeeeee
Confidence 9996 99998665
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.7e-07 Score=85.16 Aligned_cols=120 Identities=19% Similarity=0.206 Sum_probs=78.4
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc--------ccC
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR--------SFG 447 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~--------~vg 447 (525)
..+||||| +..++.+.|++|+|+|+|+++++.|++++++.+.... |. |+.
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 103 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMR 103 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGGSC
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHHhCC
Confidence 45999999 3444444699999999999999999999876442211 22 333
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhc---ccC-CCCCCCHHHHHHHHHhcCCcEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEY---IFP-GGCLPSLSRITSAMSAASRLWY 518 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kY---IFP-Gg~LPsl~~i~~~~~~a~gl~V 518 (525)
.++...+++++.++|||||++++...+.++..+..........-.+ ..| ...+.+.+++.+.++.. ||.+
T Consensus 104 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-g~~~ 177 (209)
T 2p8j_A 104 KNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDM-KVLF 177 (209)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTS-EEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhc-Ccee
Confidence 4678899999999999999999998877654432100000000000 011 11345777888877774 6544
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.6e-07 Score=92.47 Aligned_cols=121 Identities=14% Similarity=0.149 Sum_probs=86.3
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc--------ccC
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR--------SFG 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~--------~vg 447 (525)
.+||||| +..+++++ +++|+++|+ +++++.|++++++.|+.++ |. +..
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~ 247 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLD 247 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEEEEESCGGGCC
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEEEEchhccCCC
Confidence 5999999 67777764 789999999 9999999999876554333 33 223
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
.+....+++++.++|||||++++.+...++..........++.. ....++...+.+++.+.++++ ||+++-..
T Consensus 248 ~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~t~~e~~~ll~~a-Gf~~~~~~ 320 (334)
T 2ip2_A 248 EAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHL-FMACAGRHRTTEEVVDLLGRG-GFAVERIV 320 (334)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHH-HHHHSCCCCBHHHHHHHHHHT-TEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHh-HhhCCCcCCCHHHHHHHHHHC-CCceeEEE
Confidence 34556999999999999999999988766532110011111111 123467778999999999996 99987654
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=98.39 E-value=4.5e-07 Score=89.87 Aligned_cols=124 Identities=19% Similarity=0.071 Sum_probs=82.4
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc----cc--C
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR----SF--G 447 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~----~v--g 447 (525)
+..+||||| ++.+++.+ +++|+|+|+|++|++.|+++++..+..-. |. .+ .
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 101 (284)
T 3gu3_A 22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLH 101 (284)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCGGG
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChhhc
Confidence 345999999 77777764 58999999999999999999876553111 32 11 1
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCC---------CcchhcccCchhHHhh----cccCCCCCCCHHHHHHHHHhcC
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIP---------DERYNEFRLSSDFMKE----YIFPGGCLPSLSRITSAMSAAS 514 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~---------~~~~~~~~~~~~fi~k----YIFPGg~LPsl~~i~~~~~~a~ 514 (525)
..+.+.+++++.++|||||++++.+.... +...........|.+. ..-.|..+++..++.+.++++
T Consensus 102 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a- 180 (284)
T 3gu3_A 102 MTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSEL- 180 (284)
T ss_dssp CSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHHHHHHHT-
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHHHHHHHc-
Confidence 35788999999999999999999876511 0000000011112111 112355667778889899996
Q ss_pred CcEEEEE
Q 043102 515 RLWYNLA 521 (525)
Q Consensus 515 gl~V~~~ 521 (525)
||+.+-.
T Consensus 181 GF~~v~~ 187 (284)
T 3gu3_A 181 GVKNIEC 187 (284)
T ss_dssp TCEEEEE
T ss_pred CCCeEEE
Confidence 8987654
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=98.38 E-value=4.7e-07 Score=88.97 Aligned_cols=113 Identities=12% Similarity=0.019 Sum_probs=75.5
Q ss_pred CCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcC-------------------------------
Q 043102 397 KVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEAD------------------------------- 438 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~g------------------------------- 438 (525)
++.+||||| ++.+++. |+ +|+|+|+|+.|++.|+++++...
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~-~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 133 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHh-hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence 334999999 4444443 66 69999999999999998764321
Q ss_pred ---------CC---------C-C-Cc--------ccC--cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchh
Q 043102 439 ---------LE---------R-N-DR--------SFG--HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSD 488 (525)
Q Consensus 439 ---------l~---------d-~-D~--------~vg--~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~ 488 (525)
+. . . |. |+. .+++...+++++++|||||++++..+.... .|.
T Consensus 134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~-~~~------- 205 (263)
T 2a14_A 134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLP-SYM------- 205 (263)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC-EEE-------
T ss_pred hhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCc-cce-------
Confidence 00 1 1 44 222 256678999999999999999998754322 111
Q ss_pred HHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 489 FMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 489 fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
.....|+. ...+.+++.++++++ ||++.-.
T Consensus 206 -~g~~~~~~-~~~~~~~l~~~l~~a-GF~i~~~ 235 (263)
T 2a14_A 206 -VGKREFSC-VALEKGEVEQAVLDA-GFDIEQL 235 (263)
T ss_dssp -ETTEEEEC-CCCCHHHHHHHHHHT-TEEEEEE
T ss_pred -eCCeEeec-cccCHHHHHHHHHHC-CCEEEEE
Confidence 01122332 234889999999995 9988654
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.37 E-value=1e-07 Score=93.25 Aligned_cols=112 Identities=17% Similarity=0.151 Sum_probs=76.2
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH----cC-----CCCC--Cc----c-c-CcccHHH
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE----AD-----LERN--DR----S-F-GHEYMEE 453 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~----~g-----l~d~--D~----~-v-g~~~~~~ 453 (525)
+..+||||| +..+++ .+++|+|+|+|++|++.|+++..- .. +.+. |. + + ..+++..
T Consensus 34 ~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~ 112 (261)
T 3ege_A 34 KGSVIADIGAGTGGYSVALAN-QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEK 112 (261)
T ss_dssp TTCEEEEETCTTSHHHHHHHT-TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEESCGGGCSSHHH
T ss_pred CCCEEEEEcCcccHHHHHHHh-CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEcchHhhccCHHH
Confidence 345999999 777887 599999999999999998877410 01 1111 44 1 1 1368899
Q ss_pred HHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccC------CCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 454 FFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFP------GGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 454 ~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFP------Gg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
+++++.++|| ||++++.+...... ...|... .+| +..+++..++. .++++ ||+++-
T Consensus 113 ~l~~~~~~Lk-gG~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~l~~a-GF~~v~ 174 (261)
T 3ege_A 113 SFQEMQRIIR-DGTIVLLTFDIRLA-------QRIWLYD-YFPFLWEDALRFLPLDEQIN-LLQEN-TKRRVE 174 (261)
T ss_dssp HHHHHHHHBC-SSCEEEEEECGGGC-------CCCGGGG-TCHHHHHHHHTSCCHHHHHH-HHHHH-HCSEEE
T ss_pred HHHHHHHHhC-CcEEEEEEcCCchh-------HHHHHHH-HHHHHhhhhhhhCCCHHHHH-HHHHc-CCCcee
Confidence 9999999999 99999888753221 1112211 111 24678888888 88886 896554
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.3e-07 Score=101.83 Aligned_cols=109 Identities=19% Similarity=0.221 Sum_probs=77.4
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc--------c
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR--------S 445 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~--------~ 445 (525)
+..+||||| ++.+|+...++|+|||+|+ |++.|++++++.|+.++ |. +
T Consensus 158 ~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~Ivs~~~~~~ 236 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYM 236 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCHHH
T ss_pred CCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccCCCeEEEEEeCchHh
Confidence 445999999 7777875346999999998 99999999999888654 22 1
Q ss_pred cCcccHHHHHHHHHhccCCCcEEEEEEecC-----CC-cch-hcccCchhHHhhcccCCCCCCCHHHHH
Q 043102 446 FGHEYMEEFFGCCESLIAKDGLFVLQFISI-----PD-ERY-NEFRLSSDFMKEYIFPGGCLPSLSRIT 507 (525)
Q Consensus 446 vg~~~~~~~f~~i~r~LkpGG~~viq~i~~-----~~-~~~-~~~~~~~~fi~kYIFPGg~LPsl~~i~ 507 (525)
+..+.....+..+.++|||||++++..... .+ ..+ +.+ ...+|..+.+|||+.+|++.++.
T Consensus 237 ~~~e~~~~~l~~~~~~LkpgG~li~~~~~~~~~pi~~~~l~~e~~-~~~~~w~~~~~~g~dl~~l~~~~ 304 (480)
T 3b3j_A 237 LFNERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQF-TKANFWYQPSFHGVDLSALRGAA 304 (480)
T ss_dssp HTCHHHHHHHHHGGGGEEEEEEEESCEEEEEEEEECCHHHHHHHH-HHHHHHHSSCBTTBCCGGGHHHH
T ss_pred cCcHHHHHHHHHHHHhcCCCCEEEEEeceeeeeccCchHHHHHHh-hccCccccccCCCcChhhhhhHH
Confidence 223556677888999999999998644221 11 111 111 12345555699999999998875
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.5e-06 Score=82.47 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=67.1
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc------------------
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN------DR------------------ 444 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------------------ 444 (525)
+..+||||| ++.+|+.. +++|+|+|+|+++++.|++++++.|+.++ |.
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 345999999 78888763 68999999999999999999999998764 22
Q ss_pred ---ccCcccHHHHHHHHHhccCCCcEEEEEEecCCC
Q 043102 445 ---SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPD 477 (525)
Q Consensus 445 ---~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~ 477 (525)
.....++..+++.+.++|||||+++++.+..+.
T Consensus 144 v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g 179 (225)
T 3tr6_A 144 IYIDADKANTDLYYEESLKLLREGGLIAVDNVLRRG 179 (225)
T ss_dssp EEECSCGGGHHHHHHHHHHHEEEEEEEEEECSSGGG
T ss_pred EEECCCHHHHHHHHHHHHHhcCCCcEEEEeCCCcCC
Confidence 112457899999999999999999999876554
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.9e-07 Score=89.96 Aligned_cols=75 Identities=31% Similarity=0.515 Sum_probs=60.2
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc---------ccCc
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR---------SFGH 448 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~---------~vg~ 448 (525)
.+||||| ++.++++ |++|+|+|+|+++++.|+++++..++... |. +...
T Consensus 43 ~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~ 121 (252)
T 1wzn_A 43 RRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDE 121 (252)
T ss_dssp CEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGGGGSCH
T ss_pred CEEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEEEcCCchhcCCH
Confidence 4999999 7778875 99999999999999999999987664322 22 1123
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
++...+++++.++|||||++++....
T Consensus 122 ~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 122 EDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 46789999999999999999987543
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.4e-06 Score=85.82 Aligned_cols=121 Identities=13% Similarity=0.108 Sum_probs=79.5
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcC-----CC-----CC-Cc-----ccC-cccHHHH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEAD-----LE-----RN-DR-----SFG-HEYMEEF 454 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~g-----l~-----d~-D~-----~vg-~~~~~~~ 454 (525)
..+||||| +..+++ .+++|+|+|+|++|++.|+++..... .. .. |. .+. ..+...+
T Consensus 58 ~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~d~~~~ 136 (279)
T 3ccf_A 58 GEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFSNAMLHWVKEPEAA 136 (279)
T ss_dssp TCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEEESCGGGCSCHHHH
T ss_pred CCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEEcchhhhCcCHHHH
Confidence 35999999 677777 69999999999999999998852211 00 01 33 111 2578899
Q ss_pred HHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcc-----cC-CCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 455 FGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYI-----FP-GGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 455 f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYI-----FP-Gg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
++++.++|||||++++......... .........+.++- ++ ...+++..++.+.++++ ||++...
T Consensus 137 l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-Gf~~~~~ 207 (279)
T 3ccf_A 137 IASIHQALKSGGRFVAEFGGKGNIK-YILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQ-GFDVTYA 207 (279)
T ss_dssp HHHHHHHEEEEEEEEEEEECTTTTH-HHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHH-TEEEEEE
T ss_pred HHHHHHhcCCCcEEEEEecCCcchH-HHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHc-CCEEEEE
Confidence 9999999999999999776533210 00000111122211 11 12567999999999996 9998653
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=2e-06 Score=85.45 Aligned_cols=114 Identities=16% Similarity=0.214 Sum_probs=76.1
Q ss_pred Ceehhhc------HH----HHHHh-cCCEE--EEEcCChHHHHHHHHHHHHc-CCC-----------------------C
Q 043102 399 REVIFLG------TI----EVVKR-TGCKY--TGITLAEKQLKYAGIKVKEA-DLE-----------------------R 441 (525)
Q Consensus 399 ~rVLDIG------a~----~lA~~-~G~~V--tGIdlS~eql~~Ar~r~~~~-gl~-----------------------d 441 (525)
.+||||| +. .++.+ .++.| +|||+|++|++.|++++++. ++. +
T Consensus 54 ~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (292)
T 2aot_A 54 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKEL 133 (292)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTCC
T ss_pred CeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccCC
Confidence 3999999 22 22333 35655 99999999999999998653 221 1
Q ss_pred C--Cc----cc--CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcc--cCC---CCCCCHHHHHH
Q 043102 442 N--DR----SF--GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYI--FPG---GCLPSLSRITS 508 (525)
Q Consensus 442 ~--D~----~v--g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYI--FPG---g~LPsl~~i~~ 508 (525)
. |. ++ ..++....+++++++|||||++++...... ..+ ..+...|. +|. ...++..++.+
T Consensus 134 ~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (292)
T 2aot_A 134 QKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGS-SGW------DKLWKKYGSRFPQDDLCQYITSDDLTQ 206 (292)
T ss_dssp CCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTT-SHH------HHHHHHHGGGSCCCTTCCCCCHHHHHH
T ss_pred CceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCC-ccH------HHHHHHHHHhccCCCcccCCCHHHHHH
Confidence 1 33 11 135789999999999999999999865422 211 11222221 232 35678999999
Q ss_pred HHHhcCCcEEEE
Q 043102 509 AMSAASRLWYNL 520 (525)
Q Consensus 509 ~~~~a~gl~V~~ 520 (525)
.++++ ||++..
T Consensus 207 ~l~~a-Gf~~~~ 217 (292)
T 2aot_A 207 MLDNL-GLKYEC 217 (292)
T ss_dssp HHHHH-TCCEEE
T ss_pred HHHHC-CCceEE
Confidence 99996 998765
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.33 E-value=5e-07 Score=88.28 Aligned_cols=81 Identities=16% Similarity=0.175 Sum_probs=67.6
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc------------------
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN------DR------------------ 444 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------------------ 444 (525)
+..+||||| ++.+|+.. +++|+|||+|+++++.|+++++..|+.++ |+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 345999999 78888753 78999999999999999999999998765 32
Q ss_pred ---ccCcccHHHHHHHHHhccCCCcEEEEEEecCCC
Q 043102 445 ---SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPD 477 (525)
Q Consensus 445 ---~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~ 477 (525)
.....++..+++++.++|||||+++++.+....
T Consensus 140 V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g 175 (242)
T 3r3h_A 140 IFIDADKTNYLNYYELALKLVTPKGLIAIDNIFWDG 175 (242)
T ss_dssp EEEESCGGGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred EEEcCChHHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence 112467899999999999999999999887654
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.5e-07 Score=90.05 Aligned_cols=78 Identities=12% Similarity=0.168 Sum_probs=58.3
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcC-----CCC-----C-Cc---------ccC-cccH
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEAD-----LER-----N-DR---------SFG-HEYM 451 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~g-----l~d-----~-D~---------~vg-~~~~ 451 (525)
.+||||| +..++++ +++|+|||+|+++++.|++++.... +.+ . |. |+. .++.
T Consensus 52 ~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~~~~~ 130 (263)
T 3pfg_A 52 ASLLDVACGTGMHLRHLADS-FGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAEL 130 (263)
T ss_dssp CEEEEETCTTSHHHHHHTTT-SSEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCHHHHH
T ss_pred CcEEEeCCcCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCCHHHH
Confidence 5999999 6677765 8899999999999999999864211 111 1 33 121 2467
Q ss_pred HHHHHHHHhccCCCcEEEEEEecCCC
Q 043102 452 EEFFGCCESLIAKDGLFVLQFISIPD 477 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~i~~~~ 477 (525)
..+++++.++|||||++++.....++
T Consensus 131 ~~~l~~~~~~L~pgG~l~i~~~~~~~ 156 (263)
T 3pfg_A 131 DAALERFAAHVLPDGVVVVEPWWFPE 156 (263)
T ss_dssp HHHHHHHHHTEEEEEEEEECCCCCTT
T ss_pred HHHHHHHHHhcCCCcEEEEEeccChh
Confidence 78999999999999999997654443
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-06 Score=83.61 Aligned_cols=73 Identities=19% Similarity=0.339 Sum_probs=57.0
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc---------cc-C
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR---------SF-G 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~---------~v-g 447 (525)
.+||||| +..+++. ++|+|+|+|+++++.|+++++..+.... |. |+ .
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~ 112 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNYLQT 112 (243)
T ss_dssp CEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGGGCCS
T ss_pred CeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchhhcCC
Confidence 5999999 6667765 8999999999999999999876552211 22 11 2
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
.++...+++++.++|||||++++...
T Consensus 113 ~~~~~~~l~~~~~~L~pgG~l~~~~~ 138 (243)
T 3d2l_A 113 EADVKQTFDSAARLLTDGGKLLFDVH 138 (243)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 25678899999999999999998653
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.6e-07 Score=90.35 Aligned_cols=117 Identities=10% Similarity=-0.007 Sum_probs=73.2
Q ss_pred cccCchhHHHHhhhcccccchHHHHhcccccc--------chhccc--cCCCeehhhc------HHHHHHhcCCEEEEEc
Q 043102 358 SRTNTLTQACRHISRHYDLSNELFCLFLDESL--------TYSCAL--FKVREVIFLG------TIEVVKRTGCKYTGIT 421 (525)
Q Consensus 358 ~~~N~~~~s~~nIa~hYDl~nd~y~l~Ld~~m--------~ys~a~--f~~~rVLDIG------a~~lA~~~G~~VtGId 421 (525)
...|.....+...+..||..+..+...-...| ...... -+..+||||| +..+++....+|+|||
T Consensus 11 ~~~~~~~~~~~~~~~~Yd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD 90 (236)
T 1zx0_A 11 APGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIE 90 (236)
T ss_dssp CTTCBCHHHHTTSCEEECTTSCEEEETTEEEEEGGGHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEE
T ss_pred CCcCCCchhhhcchhhcCCccchhhccchHHHHHHHHHHHHHHHhhcCCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEc
Confidence 34466677777777788854442211111111 111111 1234999999 6677664344999999
Q ss_pred CChHHHHHHHHHHHHcCC----------------CCC--Cc--c------c---CcccHHHHHHHHHhccCCCcEEEEEE
Q 043102 422 LAEKQLKYAGIKVKEADL----------------ERN--DR--S------F---GHEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 422 lS~eql~~Ar~r~~~~gl----------------~d~--D~--~------v---g~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
+|++|++.|+++++..+. .+. |. . + ....++.+++++.++|||||++++.+
T Consensus 91 ~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 91 CNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred CCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 999999999999866442 111 33 1 1 12234578999999999999998765
Q ss_pred ec
Q 043102 473 IS 474 (525)
Q Consensus 473 i~ 474 (525)
..
T Consensus 171 ~~ 172 (236)
T 1zx0_A 171 LT 172 (236)
T ss_dssp HH
T ss_pred cC
Confidence 43
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.2e-06 Score=79.37 Aligned_cols=79 Identities=9% Similarity=0.074 Sum_probs=61.4
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-------------------Cc-------
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-------------------DR------- 444 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-------------------D~------- 444 (525)
+..+|||+| ++.++++...+|+|||+|+++++.|+++++..++..- |.
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~ 123 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPY 123 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCT
T ss_pred CCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCC
Confidence 345999999 6667765345899999999999999999988876211 22
Q ss_pred ccCcccHHHHHHHHHh--ccCCCcEEEEEEecC
Q 043102 445 SFGHEYMEEFFGCCES--LIAKDGLFVLQFISI 475 (525)
Q Consensus 445 ~vg~~~~~~~f~~i~r--~LkpGG~~viq~i~~ 475 (525)
+...+++...++.+.+ +|||||+++++....
T Consensus 124 ~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 124 NVDSADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp TSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 1112568899999999 999999999987654
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.27 E-value=9.3e-07 Score=85.23 Aligned_cols=81 Identities=16% Similarity=0.309 Sum_probs=66.7
Q ss_pred CCCeehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc-----------------cc
Q 043102 397 KVREVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN------DR-----------------SF 446 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~-----------------~v 446 (525)
+..+||||| ++.+|+. .+++|+|||+|+++++.|++++++.|+.++ |. ..
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~ 150 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA 150 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence 345999999 7788874 378999999999999999999999988654 22 11
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEecCCC
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFISIPD 477 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~ 477 (525)
....+..+++.+.++|||||+++++.+....
T Consensus 151 ~~~~~~~~l~~~~~~LkpgG~lv~d~~~~~g 181 (232)
T 3ntv_A 151 AKAQSKKFFEIYTPLLKHQGLVITDNVLYHG 181 (232)
T ss_dssp TSSSHHHHHHHHGGGEEEEEEEEEECTTGGG
T ss_pred cHHHHHHHHHHHHHhcCCCeEEEEeeCCcCc
Confidence 2567899999999999999999998876543
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.27 E-value=8.6e-07 Score=85.46 Aligned_cols=122 Identities=18% Similarity=0.124 Sum_probs=78.6
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHc-----C---CC-CC--Cc----c-c-CcccHHH
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEA-----D---LE-RN--DR----S-F-GHEYMEE 453 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~-----g---l~-d~--D~----~-v-g~~~~~~ 453 (525)
..+||||| +..++++. +++|+|+|+|++|++.|+++.... . +. +. |. . + ...+...
T Consensus 34 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~~~ 113 (259)
T 2p35_A 34 VLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYANAVFQWVPDHLA 113 (259)
T ss_dssp CSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEEESCGGGSTTHHH
T ss_pred CCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEEeCchhhCCCHHH
Confidence 35999999 66777654 789999999999999999883211 0 11 00 33 1 1 1257899
Q ss_pred HHHHHHhccCCCcEEEEEEecCCCcchh----cccCchhHHhhc--c-cCCCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 454 FFGCCESLIAKDGLFVLQFISIPDERYN----EFRLSSDFMKEY--I-FPGGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 454 ~f~~i~r~LkpGG~~viq~i~~~~~~~~----~~~~~~~fi~kY--I-FPGg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
+++++.++|||||++++........... .......|.... + -++..+++..++.+.++++ ||+|..
T Consensus 114 ~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-Gf~v~~ 186 (259)
T 2p35_A 114 VLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPK-SSRVDV 186 (259)
T ss_dssp HHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHHHGGG-EEEEEE
T ss_pred HHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHHHHhc-CCceEE
Confidence 9999999999999999987643322111 000001122211 0 1134678999999999996 998654
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=98.24 E-value=3.7e-07 Score=90.50 Aligned_cols=76 Identities=11% Similarity=0.143 Sum_probs=56.4
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHH---------HcCCCCC--Cc-----ccCcccHHHHHH
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVK---------EADLERN--DR-----SFGHEYMEEFFG 456 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~---------~~gl~d~--D~-----~vg~~~~~~~f~ 456 (525)
.+||||| +..++++ +.+|+|||+|++|++.|+++.. +..+.+. |. .+..-+.+.+++
T Consensus 41 ~~vLDvGcGtG~~~~~l~~~-~~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~~~~~ 119 (257)
T 4hg2_A 41 GDALDCGCGSGQASLGLAEF-FERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLDRFWA 119 (257)
T ss_dssp SEEEEESCTTTTTHHHHHTT-CSEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHHHHHH
T ss_pred CCEEEEcCCCCHHHHHHHHh-CCEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHHHHHH
Confidence 4999999 7788874 8999999999999999876421 0111111 33 223346789999
Q ss_pred HHHhccCCCcEEEEEEecC
Q 043102 457 CCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 457 ~i~r~LkpGG~~viq~i~~ 475 (525)
++.|+|||||++++.....
T Consensus 120 e~~rvLkpgG~l~~~~~~~ 138 (257)
T 4hg2_A 120 ELRRVARPGAVFAAVTYGL 138 (257)
T ss_dssp HHHHHEEEEEEEEEEEECC
T ss_pred HHHHHcCCCCEEEEEECCC
Confidence 9999999999999876544
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.24 E-value=2e-06 Score=83.46 Aligned_cols=80 Identities=13% Similarity=0.133 Sum_probs=66.0
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc------------------
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN------DR------------------ 444 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------------------ 444 (525)
...+||||| ++.+|+.. +++|+++|+|+++++.|++++++.|+.++ |+
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 149 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYD 149 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcC
Confidence 345999999 77888763 78999999999999999999999888654 22
Q ss_pred ----ccCcccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 445 ----SFGHEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 445 ----~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
.....++..+++.+.++|||||+++++.+...
T Consensus 150 ~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~~~~~ 185 (237)
T 3c3y_A 150 FGFVDADKPNYIKYHERLMKLVKVGGIVAYDNTLWG 185 (237)
T ss_dssp EEEECSCGGGHHHHHHHHHHHEEEEEEEEEECTTGG
T ss_pred EEEECCchHHHHHHHHHHHHhcCCCeEEEEecCCcC
Confidence 11245789999999999999999999887654
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.23 E-value=9.1e-07 Score=83.40 Aligned_cols=80 Identities=11% Similarity=0.059 Sum_probs=65.0
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc---------------ccC
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN------DR---------------SFG 447 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~---------------~vg 447 (525)
...+||||| ++.+++.. +++|+++|+|+++++.|+++++..++.++ |. ...
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 135 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDCD 135 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEETT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcCC
Confidence 345999999 77888763 78999999999999999999988877543 22 112
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
..++..+++++.++|||||+++++.+...
T Consensus 136 ~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 164 (210)
T 3c3p_A 136 VFNGADVLERMNRCLAKNALLIAVNALRR 164 (210)
T ss_dssp TSCHHHHHHHHGGGEEEEEEEEEESSSSC
T ss_pred hhhhHHHHHHHHHhcCCCeEEEEECcccc
Confidence 56789999999999999999999876554
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.8e-06 Score=78.28 Aligned_cols=76 Identities=13% Similarity=0.105 Sum_probs=59.7
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc--ccCcccH
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR--SFGHEYM 451 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~--~vg~~~~ 451 (525)
.+||||| ++.+++.. +++|+|+|+|+++++.|++++++.|+.++ |. ..+.-..
T Consensus 27 ~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~~~~ 106 (178)
T 3hm2_A 27 ETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGGLTA 106 (178)
T ss_dssp EEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC-TTC
T ss_pred CeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECCcccH
Confidence 4999999 77778764 78999999999999999999988877622 22 0011112
Q ss_pred HHHHHHHHhccCCCcEEEEEEec
Q 043102 452 EEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
..+++++.++|||||++++..+.
T Consensus 107 ~~~l~~~~~~L~~gG~l~~~~~~ 129 (178)
T 3hm2_A 107 PGVFAAAWKRLPVGGRLVANAVT 129 (178)
T ss_dssp TTHHHHHHHTCCTTCEEEEEECS
T ss_pred HHHHHHHHHhcCCCCEEEEEeec
Confidence 78999999999999999998764
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.3e-06 Score=85.47 Aligned_cols=81 Identities=7% Similarity=0.110 Sum_probs=66.2
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc------------------
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN------DR------------------ 444 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------------------ 444 (525)
...+||||| ++.+|+.. +++|++||+|+++++.|++++++.|+.++ |+
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 158 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence 345999999 77888763 78999999999999999999998887543 22
Q ss_pred ----ccCcccHHHHHHHHHhccCCCcEEEEEEecCCC
Q 043102 445 ----SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPD 477 (525)
Q Consensus 445 ----~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~ 477 (525)
.....++..+++.+.++|||||+++++.+....
T Consensus 159 ~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g 195 (247)
T 1sui_A 159 FIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNG 195 (247)
T ss_dssp EEEECSCSTTHHHHHHHHHHHBCTTCCEEEECTTGGG
T ss_pred EEEEcCchHHHHHHHHHHHHhCCCCeEEEEecCCcCC
Confidence 112467899999999999999999998876543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.6e-06 Score=85.44 Aligned_cols=78 Identities=13% Similarity=0.119 Sum_probs=63.4
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc--------ccC
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR--------SFG 447 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~--------~vg 447 (525)
+..+||||| +..++++ |++|+|+|+|+++++.|+++++..++... |. |+.
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~-g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~i~~~~~~~~~~ 198 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLL-GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDFIVSTVVFMFLN 198 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEEEEECSSGGGSC
T ss_pred CCCcEEEECCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccEEEEccchhhCC
Confidence 445999999 7788876 99999999999999999999988775211 22 445
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
.+....+++++.++|||||++++.....
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 226 (286)
T 3m70_A 199 RERVPSIIKNMKEHTNVGGYNLIVAAMS 226 (286)
T ss_dssp GGGHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 6778899999999999999988865543
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=4.1e-06 Score=86.28 Aligned_cols=121 Identities=12% Similarity=0.049 Sum_probs=84.8
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc----c----cC
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR----S----FG 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~----~----vg 447 (525)
.+||||| ++.+++++ +.+++..|+ +++++.|+++++..+ .++ |. + ..
T Consensus 181 ~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~~~~D~~~~~~vlh~~~ 258 (353)
T 4a6d_A 181 PLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPLPEADLYILARVLHDWA 258 (353)
T ss_dssp SEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSCCCCCSEEEEESSGGGSC
T ss_pred CeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCCCCCceEEEeeeecccCC
Confidence 3899999 77888774 789999998 789999999876443 333 22 1 23
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
.++-...++++++.|||||+++|.+...++..........--+.-....+|.-.+.+|+.+.++++ ||+++-..
T Consensus 259 d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~A-Gf~~v~v~ 332 (353)
T 4a6d_A 259 DGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSA-GFRDFQFK 332 (353)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHH-TCEEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHC-CCceEEEE
Confidence 344568899999999999999999887765431110001111222234578888999999999996 99987654
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.22 E-value=4.8e-07 Score=88.28 Aligned_cols=115 Identities=9% Similarity=0.115 Sum_probs=72.7
Q ss_pred Ceehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcC--------------CCC--CCc---ccCcccHH
Q 043102 399 REVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEAD--------------LER--NDR---SFGHEYME 452 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~g--------------l~d--~D~---~vg~~~~~ 452 (525)
.+||||| +..++++ |+ +|+|||+|++|++.|+++..... +.. .|. .+-...+.
T Consensus 39 ~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~l~ 117 (232)
T 3opn_A 39 KTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFISLD 117 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSCGG
T ss_pred CEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhhHH
Confidence 4899999 7778876 75 99999999999999888643211 110 011 11123357
Q ss_pred HHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhh-ccc--CCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 453 EFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKE-YIF--PGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~k-YIF--PGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
.+++++.++|||||++++-. .+.|+. ....+.+ -++ |..+..++.++.+.++++ ||++.-..
T Consensus 118 ~~l~~i~rvLkpgG~lv~~~----~p~~e~---~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~a-Gf~v~~~~ 182 (232)
T 3opn_A 118 LILPPLYEILEKNGEVAALI----KPQFEA---GREQVGKNGIIRDPKVHQMTIEKVLKTATQL-GFSVKGLT 182 (232)
T ss_dssp GTHHHHHHHSCTTCEEEEEE----CHHHHS---CHHHHC-CCCCCCHHHHHHHHHHHHHHHHHH-TEEEEEEE
T ss_pred HHHHHHHHhccCCCEEEEEE----Cccccc---CHHHhCcCCeecCcchhHHHHHHHHHHHHHC-CCEEEEEE
Confidence 89999999999999999832 222321 1111111 010 001112677899899886 99987654
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=2.2e-06 Score=84.17 Aligned_cols=97 Identities=20% Similarity=0.136 Sum_probs=74.1
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc---ccCcccHHH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR---SFGHEYMEE 453 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~---~vg~~~~~~ 453 (525)
..+|||+| ++.+++ .|++|+|+|+|+++++.|+++++..++... |. .........
T Consensus 121 ~~~VLDiGcG~G~l~~~la~-~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~~~~~ 199 (254)
T 2nxc_A 121 GDKVLDLGTGSGVLAIAAEK-LGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAELHAA 199 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHH-TTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHHHHHH
T ss_pred CCEEEEecCCCcHHHHHHHH-hCCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHHHHHH
Confidence 35999999 677776 488999999999999999999988776421 22 112345778
Q ss_pred HHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 454 FFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 454 ~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
+++.+.++|||||++++..+... ...++.+.++++ ||++.-.
T Consensus 200 ~l~~~~~~LkpgG~lils~~~~~-------------------------~~~~v~~~l~~~-Gf~~~~~ 241 (254)
T 2nxc_A 200 LAPRYREALVPGGRALLTGILKD-------------------------RAPLVREAMAGA-GFRPLEE 241 (254)
T ss_dssp HHHHHHHHEEEEEEEEEEEEEGG-------------------------GHHHHHHHHHHT-TCEEEEE
T ss_pred HHHHHHHHcCCCCEEEEEeeccC-------------------------CHHHHHHHHHHC-CCEEEEE
Confidence 99999999999999999765321 256777788885 8988654
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.21 E-value=2.3e-06 Score=80.69 Aligned_cols=77 Identities=16% Similarity=0.273 Sum_probs=59.2
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc----c---c-C
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR----S---F-G 447 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~----~---v-g 447 (525)
..+||||| +..+++. +.+|+|+|+|+++++.|+++++..+.... |. . . .
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~ 117 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFE 117 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCC
T ss_pred CCeEEEEeccCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhCC
Confidence 34999999 6677765 77999999999999999999876541111 22 1 1 2
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
..+...+++++.++|||||++++.....
T Consensus 118 ~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 145 (227)
T 1ve3_A 118 PLELNQVFKEVRRVLKPSGKFIMYFTDL 145 (227)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEecCh
Confidence 3467889999999999999999987653
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.21 E-value=1.3e-06 Score=85.15 Aligned_cols=114 Identities=18% Similarity=0.223 Sum_probs=75.2
Q ss_pred cCchhHHHHhhhcccccchHH--HHhccccccchhcccc-CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHH
Q 043102 360 TNTLTQACRHISRHYDLSNEL--FCLFLDESLTYSCALF-KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYA 430 (525)
Q Consensus 360 ~N~~~~s~~nIa~hYDl~nd~--y~l~Ld~~m~ys~a~f-~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~A 430 (525)
.+++...++.++..||...+. +.............+. +..+||||| +..+++. |++|+|+|+|+++++.|
T Consensus 14 ~~~~~~~~~~~a~~Yd~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a 92 (260)
T 2avn_A 14 KLRSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVA 92 (260)
T ss_dssp ECCHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHH
T ss_pred hhhhcchhhHHHHHHHHhccccchhHHHHHHHHHHHHhcCCCCeEEEeCCCcCHHHHHHHHc-CCeEEEEeCCHHHHHHH
Confidence 467788888999999875421 1100010001111111 345999999 6777775 89999999999999999
Q ss_pred HHHHHH----cC-----CCCC--Cc--ccC-----cccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 431 GIKVKE----AD-----LERN--DR--SFG-----HEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 431 r~r~~~----~g-----l~d~--D~--~vg-----~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
+++... .. +.+. |. ..+ ..+...+++++.++|||||++++....
T Consensus 93 ~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 93 REKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp HHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred HhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 998641 00 1111 33 111 145789999999999999999998764
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.6e-05 Score=82.93 Aligned_cols=145 Identities=15% Similarity=0.206 Sum_probs=90.0
Q ss_pred cEEEEeCCCceEeCCEEEEecChHHHHHhhcCCCCHHHHhhccCCc-----eeEeccCCCCCCCCCC-------------
Q 043102 112 SCTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH-----DIFLHCDKNSMPQNPA------------- 173 (525)
Q Consensus 112 gv~v~~~~g~~e~fD~VV~A~hadqAL~lL~~~~t~~E~~iLg~f~-----~~vlHtD~s~mP~~~~------------- 173 (525)
+|.|.+.+|++..+|+||+|+++.++.+||.+ +. ..+.|..+. .+.+.-|....+....
T Consensus 265 ~~~v~~~~g~~~~ad~vi~a~p~~~~~~l~~~-~~--~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~ 341 (470)
T 3i6d_A 265 CYSLELDNGVTLDADSVIVTAPHKAAAGMLSE-LP--AISHLKNMHSTSVANVALGFPEGSVQMEHEGTGFVISRNSDFA 341 (470)
T ss_dssp SEEEEESSSCEEEESEEEECSCHHHHHHHTTT-ST--THHHHHTCEEEEEEEEEEEESSTTCCCSSCSSEEEECSTTCCS
T ss_pred eEEEEECCCCEEECCEEEECCCHHHHHHHcCC-ch--hhHHHhcCCCCceEEEEEEECchhcCCCCCCeEEEccCCCCCC
Confidence 68899999988899999999999999999974 42 345566665 6666667655533210
Q ss_pred ----Cccc--cccccCCCCCCCCCCCCCeE-EEc----------------------------CCCCCCcc-eeeEEEecC
Q 043102 174 ----AWSA--WSFLGSLDSKNLGETSLPYL-VTL----------------------------NPDHAPEH-TLLKWSTGP 217 (525)
Q Consensus 174 ----aWas--wNy~~~~~~~nl~~~~~~~f-vTL----------------------------Np~~~p~~-il~~~~y~H 217 (525)
.|.+ |+... + .+..++ ++. ....+|.. ...+|.+.-
T Consensus 342 ~~~~~~~s~~~~~~~-------p-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~p~~~~~~~w~~a~ 413 (470)
T 3i6d_A 342 ITACTWTNKKWPHAA-------P-EGKTLLRAYVGKAGDESIVDLSDNDIINIVLEDLKKVMNINGEPEMTCVTRWHESM 413 (470)
T ss_dssp EEEEEEHHHHCGGGS-------C-TTCEEEEEEECCSSCCGGGTSCHHHHHHHHHHHHGGGSCCCSCCSEEEEEEEEEEE
T ss_pred ceEEEEEcCcCCCcC-------C-CCCEEEEEEECCCCCccccCCCHHHHHHHHHHHHHHHhCCCCCceEEEEEEcCCcc
Confidence 1221 11111 0 011111 111 11111222 566898888
Q ss_pred CCCCHHHHHHHHHhhh-h-cCCCCeEEeccCCCCCCchhhhchHHHHHhhhc
Q 043102 218 PVPFVAASKASLELGH-I-QGRRGIWFRGAYQGYGFHEDGLKDLSINSCMTY 267 (525)
Q Consensus 218 Pv~~~~a~~aq~~l~~-i-qG~~~~~fcGay~g~GfHEdg~~Sgl~aA~~ll 267 (525)
|.+++........+.. + +...+++|||+|+...-.|+|+.||.++|+.++
T Consensus 414 p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g~gv~~a~~sG~~aA~~i~ 465 (470)
T 3i6d_A 414 PQYHVGHKQRIKELREALASAYPGVYMTGASFEGVGIPDCIDQGKAAVSDAL 465 (470)
T ss_dssp EECBTTHHHHHHHHHHHHHHHSTTEEECSTTTSCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 8887776543222222 2 223579999998765569999999999999985
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.7e-05 Score=83.26 Aligned_cols=150 Identities=14% Similarity=0.055 Sum_probs=92.4
Q ss_pred EEEEeCCCceEeCCEEEEecChHHHHHhhcCCCCHHHHhhccCCc-----eeEeccCCCCCCCCCCCccccccccCCCCC
Q 043102 113 CTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH-----DIFLHCDKNSMPQNPAAWSAWSFLGSLDSK 187 (525)
Q Consensus 113 v~v~~~~g~~e~fD~VV~A~hadqAL~lL~~~~t~~E~~iLg~f~-----~~vlHtD~s~mP~~~~aWaswNy~~~~~~~ 187 (525)
+.|.+. |++..+|+||+|+++.++.+||.+ ..+...+.|..+. .+.+.-|...+|.. .|.|+......
T Consensus 268 ~~v~~~-~~~~~ad~vv~a~p~~~~~~ll~~-~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~-----~~g~l~~~~~~ 340 (477)
T 3nks_A 268 WKVSLR-DSSLEADHVISAIPASVLSELLPA-EAAPLARALSAITAVSVAVVNLQYQGAHLPVQ-----GFGHLVPSSED 340 (477)
T ss_dssp EEEECS-SCEEEESEEEECSCHHHHHHHSCG-GGHHHHHHHHTCCEEEEEEEEEEETTCCCSSC-----SSEEECCTTTC
T ss_pred EEEEEC-CeEEEcCEEEECCCHHHHHHhccc-cCHHHHHHHhcCCCCcEEEEEEEECCCCCCCC-----CceEEccCCCC
Confidence 677664 447889999999999999999974 5566777888887 55666666655421 11222211100
Q ss_pred -----------CCCC----CCCCeE-EEc--------------------------------CCCCCCcc-eeeEEEecCC
Q 043102 188 -----------NLGE----TSLPYL-VTL--------------------------------NPDHAPEH-TLLKWSTGPP 218 (525)
Q Consensus 188 -----------nl~~----~~~~~f-vTL--------------------------------Np~~~p~~-il~~~~y~HP 218 (525)
..+. .+..++ +++ ....+|.. .+.+|.+.-|
T Consensus 341 ~~~~~~~~~s~~~~~~~~~~~~~~l~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~v~rw~~a~p 420 (477)
T 3nks_A 341 PGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEASGCVLSQELFQQRAQEAAATQLGLKEMPSHCLVHLHKNCIP 420 (477)
T ss_dssp SSEEEEECHHHHCGGGSTTTTCEEEEEEECHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHCCCSCCSEEEEEEEEEEEE
T ss_pred CCceEEEEeccccCCCCCCCCceEEEEEECCccccccccccCCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEEEcCCccC
Confidence 0000 011111 111 11111222 4568999999
Q ss_pred CCCHHHHHHHHHhhh-hc-CCCCeEEeccCCCCCCchhhhchHHHHHhhhcCC
Q 043102 219 VPFVAASKASLELGH-IQ-GRRGIWFRGAYQGYGFHEDGLKDLSINSCMTYGE 269 (525)
Q Consensus 219 v~~~~a~~aq~~l~~-iq-G~~~~~fcGay~g~GfHEdg~~Sgl~aA~~llG~ 269 (525)
.|++.......++.. +. -..++++||+|+...--|+++.||.++|+.+++.
T Consensus 421 ~~~~g~~~~~~~~~~~l~~~~~~l~l~G~~~~G~gv~~a~~sg~~aA~~il~~ 473 (477)
T 3nks_A 421 QYTLGHWQKLESARQFLTAHRLPLTLAGASYEGVAVNDCIESGRQAAVSVLGT 473 (477)
T ss_dssp CCBTTHHHHHHHHHHHHHHTTCSEEECSTTTSCCSHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEccCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 998876554333332 22 1457999999874444699999999999999764
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.1e-06 Score=77.19 Aligned_cols=100 Identities=17% Similarity=0.110 Sum_probs=73.1
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcC----------CCCC--Cc---------ccCccc
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEAD----------LERN--DR---------SFGHEY 450 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~g----------l~d~--D~---------~vg~~~ 450 (525)
..+||||| +..+++. +++|+|+|+|+++++.|+++..... +.+. |. ++..++
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~ 125 (195)
T 3cgg_A 47 GAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDG 125 (195)
T ss_dssp TCEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSCHHH
T ss_pred CCeEEEECCCCCHHHHHHHHC-CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcChHH
Confidence 34999999 6677775 8999999999999999999864311 1111 33 222356
Q ss_pred HHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 451 MEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
...+++++.++|||||++++...... -.+..++.+.++++ ||++.-..
T Consensus 126 ~~~~l~~~~~~l~~~G~l~~~~~~~~-----------------------~~~~~~~~~~l~~~-Gf~~~~~~ 173 (195)
T 3cgg_A 126 REPALANIHRALGADGRAVIGFGAGR-----------------------GWVFGDFLEVAERV-GLELENAF 173 (195)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEETTS-----------------------SCCHHHHHHHHHHH-TEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCC-----------------------CcCHHHHHHHHHHc-CCEEeeee
Confidence 68999999999999999998643211 14678888888885 88876543
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=98.16 E-value=2.5e-06 Score=77.74 Aligned_cols=77 Identities=17% Similarity=0.256 Sum_probs=62.8
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCC-C------C-----------c-------cc
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLER-N------D-----------R-------SF 446 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d-~------D-----------~-------~v 446 (525)
..+||||| +..+++. +++|+|+|+|+++++.|+++++..++.+ + | . +.
T Consensus 53 ~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~ 131 (194)
T 1dus_A 53 DDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPIRA 131 (194)
T ss_dssp TCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEEECCCSTT
T ss_pred CCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCCceEEEECCCccc
Confidence 45999999 6777776 9999999999999999999998887764 1 2 1 11
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
+......+++++.++|||||++++.....
T Consensus 132 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 132 GKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred chhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 24567899999999999999999987653
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.16 E-value=2.6e-06 Score=87.15 Aligned_cols=120 Identities=17% Similarity=0.235 Sum_probs=80.7
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc--------ccCc
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR--------SFGH 448 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~--------~vg~ 448 (525)
.+||||| +..+++++ +.+++++|++ +++. ++++++.++.++ |. +...
T Consensus 186 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~d 262 (348)
T 3lst_A 186 GTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGD 262 (348)
T ss_dssp EEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTTTCCCCCSEEEEESCGGGSCH
T ss_pred ceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccCCCCCeEEEecCCCCCCCCCcEEEEehhccCCCH
Confidence 3999999 77788764 6799999995 4444 444433344332 33 2334
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEEe
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAVS 523 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~~ 523 (525)
++...++++++++|||||+++|.+...++..........++. ....+++...+.+++.+.++++ ||+++-...
T Consensus 263 ~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~-~~~~~~~~~~t~~e~~~ll~~a-Gf~~~~~~~ 335 (348)
T 3lst_A 263 EDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFM-MLAARTGQERTAAELEPLFTAA-GLRLDRVVG 335 (348)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHH-HHHTTSCCCCBHHHHHHHHHHT-TEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChh-hhhcCCCcCCCHHHHHHHHHHC-CCceEEEEE
Confidence 445799999999999999999998877654211111111111 1224678889999999999995 999876553
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.16 E-value=3e-06 Score=80.71 Aligned_cols=80 Identities=13% Similarity=0.221 Sum_probs=61.4
Q ss_pred CCCeehhhc------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc------------------
Q 043102 397 KVREVIFLG------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEADLERN------DR------------------ 444 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------------------ 444 (525)
+..+||||| ++.+|+. .+++|+|||+|+++++.|+++++..|+.++ |.
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 345999999 7888875 378999999999999999999998887643 21
Q ss_pred ---ccCcccHH---HHHHHHHhccCCCcEEEEEEecCCC
Q 043102 445 ---SFGHEYME---EFFGCCESLIAKDGLFVLQFISIPD 477 (525)
Q Consensus 445 ---~vg~~~~~---~~f~~i~r~LkpGG~~viq~i~~~~ 477 (525)
......+. .+++.+ ++|||||+++++.+..+.
T Consensus 138 V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~~ 175 (221)
T 3u81_A 138 VFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVPG 175 (221)
T ss_dssp EEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCCC
T ss_pred EEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCcc
Confidence 11133444 456666 999999999998887543
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=98.15 E-value=2e-06 Score=79.75 Aligned_cols=77 Identities=13% Similarity=0.158 Sum_probs=59.8
Q ss_pred CCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC------C-------------c---ccC
Q 043102 398 VREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN------D-------------R---SFG 447 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D-------------~---~vg 447 (525)
+.+|||+| ++.++++. +++|+|+|+|+++++.|++++++.|+..+ | . ..+
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 102 (197)
T 3eey_A 23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLG 102 (197)
T ss_dssp TCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEES
T ss_pred CCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCC
Confidence 34999999 77788764 47999999999999999999998777333 2 1 000
Q ss_pred ------------cccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 448 ------------HEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 448 ------------~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
.+....+++++.++|||||++++....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 103 YLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp BCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 123467999999999999999987654
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.14 E-value=3.6e-06 Score=80.26 Aligned_cols=75 Identities=23% Similarity=0.298 Sum_probs=59.1
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----Cc-----------------ccCc
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN-----DR-----------------SFGH 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D~-----------------~vg~ 448 (525)
.++||||| ++.+|+.. +++|+|||+|+++++.|++++++.|+..- |. +...
T Consensus 39 ~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~~ 118 (213)
T 2fca_A 39 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 118 (213)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred CceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECCC
Confidence 35999999 77788764 78999999999999999999988876421 22 1110
Q ss_pred c-----------cHHHHHHHHHhccCCCcEEEEEE
Q 043102 449 E-----------YMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 449 ~-----------~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
. ..+.+++++.++|||||++++.+
T Consensus 119 p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 119 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 0 14789999999999999999875
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.4e-06 Score=82.74 Aligned_cols=79 Identities=14% Similarity=0.185 Sum_probs=58.7
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcC-----CCC-----C-Cc---------ccC-ccc
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEAD-----LER-----N-DR---------SFG-HEY 450 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~g-----l~d-----~-D~---------~vg-~~~ 450 (525)
..+||||| +..++++ +.+|+|+|+|+++++.|+++..... +.+ . |. |+. .++
T Consensus 41 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~~~~ 119 (239)
T 3bxo_A 41 ASSLLDVACGTGTHLEHFTKE-FGDTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKTTEE 119 (239)
T ss_dssp CCEEEEETCTTSHHHHHHHHH-HSEEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCSHHH
T ss_pred CCeEEEecccCCHHHHHHHHh-CCcEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCCHHH
Confidence 35999999 6777775 6699999999999999998853211 110 1 33 121 256
Q ss_pred HHHHHHHHHhccCCCcEEEEEEecCCC
Q 043102 451 MEEFFGCCESLIAKDGLFVLQFISIPD 477 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~i~~~~ 477 (525)
...+++++.++|||||++++.....++
T Consensus 120 ~~~~l~~~~~~L~pgG~l~~~~~~~~~ 146 (239)
T 3bxo_A 120 LGAAVASFAEHLEPGGVVVVEPWWFPE 146 (239)
T ss_dssp HHHHHHHHHHTEEEEEEEEECCCCCTT
T ss_pred HHHHHHHHHHhcCCCeEEEEEeccCcc
Confidence 789999999999999999998765543
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.8e-06 Score=86.58 Aligned_cols=123 Identities=12% Similarity=0.031 Sum_probs=80.5
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcC--------------------------CCC---C
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEAD--------------------------LER---N 442 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~g--------------------------l~d---~ 442 (525)
..+||||| +..+++..+++|+|+|+|+++++.|+++....+ +.+ .
T Consensus 35 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 114 (313)
T 3bgv_A 35 DITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMC 114 (313)
T ss_dssp CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTCC
T ss_pred CCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCCC
Confidence 34999999 677776557899999999999999999976421 110 1
Q ss_pred -Cc--------cc--CcccHHHHHHHHHhccCCCcEEEEEEecCCCc----------c---------hhcccCchhHHhh
Q 043102 443 -DR--------SF--GHEYMEEFFGCCESLIAKDGLFVLQFISIPDE----------R---------YNEFRLSSDFMKE 492 (525)
Q Consensus 443 -D~--------~v--g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~----------~---------~~~~~~~~~fi~k 492 (525)
|. ++ ..++...+++++.++|||||++++.+....+- . |........+..+
T Consensus 115 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 194 (313)
T 3bgv_A 115 FDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCK 194 (313)
T ss_dssp EEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCSSCCE
T ss_pred EEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCCCccce
Confidence 33 11 22456799999999999999999977642100 0 1100111223344
Q ss_pred cccCC-------CCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 493 YIFPG-------GCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 493 YIFPG-------g~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
|.|.- .++.+..++.+.+++. ||+++..
T Consensus 195 ~~f~l~~~~~~~~~~~~~~~~~~l~~~~-G~~~v~~ 229 (313)
T 3bgv_A 195 YDFNLEGVVDVPEFLVYFPLLNEMAKKY-NMKLVYK 229 (313)
T ss_dssp EEEEEC---CCEEECCCHHHHHHHGGGG-TEEEEEE
T ss_pred EEEEECCcccCcceEEcHHHHHHHHHHc-CcEEEEe
Confidence 44421 2345778888888885 9998764
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=3e-06 Score=81.54 Aligned_cols=76 Identities=16% Similarity=0.168 Sum_probs=58.7
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----Cc------------------ccC
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN-----DR------------------SFG 447 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D~------------------~vg 447 (525)
.++||||| ++.+|++. +++|+|||+|+++++.|++++++.|+.+- |+ ...
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~ 114 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFP 114 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEESC
T ss_pred CCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeCC
Confidence 35999999 77788763 68999999999999999999998887532 22 100
Q ss_pred -----ccc------HHHHHHHHHhccCCCcEEEEEEe
Q 043102 448 -----HEY------MEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 448 -----~~~------~~~~f~~i~r~LkpGG~~viq~i 473 (525)
.++ .+.+++++.++|||||++++.+.
T Consensus 115 ~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 115 DPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp CCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 111 13699999999999999998763
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=3.7e-06 Score=82.90 Aligned_cols=75 Identities=20% Similarity=0.246 Sum_probs=57.6
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCC----------------------CCC--Cc---
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADL----------------------ERN--DR--- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl----------------------~d~--D~--- 444 (525)
..+||||| ++.++++ |++|+|+|+|++|++.|++++.+.+. .+. |.
T Consensus 58 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~ 136 (293)
T 3thr_A 58 CHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVIC 136 (293)
T ss_dssp CCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEEE
Confidence 35999999 7788875 89999999999999999988643221 111 33
Q ss_pred ------ccCc-----ccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 445 ------SFGH-----EYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 445 ------~vg~-----~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
|+.. +.+..+++++.++|||||++++...
T Consensus 137 ~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 137 LGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp CTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 1211 3388999999999999999999764
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.13 E-value=3e-06 Score=81.13 Aligned_cols=80 Identities=18% Similarity=0.272 Sum_probs=64.3
Q ss_pred CCCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc------------------c
Q 043102 397 KVREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN------DR------------------S 445 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------------------~ 445 (525)
+..+||||| ++.+|+.. +++|+|+|+|+++++.|+++++..|+.++ |. .
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID 133 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence 345999999 77788765 78999999999999999999998887543 22 1
Q ss_pred cCcccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 446 FGHEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 446 vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
....++..+++.+.++|||||++++.++...
T Consensus 134 ~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 164 (233)
T 2gpy_A 134 AAKGQYRRFFDMYSPMVRPGGLILSDNVLFR 164 (233)
T ss_dssp GGGSCHHHHHHHHGGGEEEEEEEEEETTTC-
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEEcCCcC
Confidence 1245688999999999999999999866543
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.1e-06 Score=81.16 Aligned_cols=74 Identities=9% Similarity=0.120 Sum_probs=52.5
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHH----HHHHcCCCCC-----Cc--------------ccC-
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGI----KVKEADLERN-----DR--------------SFG- 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~----r~~~~gl~d~-----D~--------------~vg- 447 (525)
.+||||| +..++++. +++|+|||+|++|++.+.+ +.+..++..- |. .+.
T Consensus 29 ~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~~~~~ 108 (218)
T 3mq2_A 29 DVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHVLMPW 108 (218)
T ss_dssp EEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEEESCC
T ss_pred CEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEEEccc
Confidence 4999999 77888765 7999999999998886433 3333444321 22 111
Q ss_pred -------cccHHHHHHHHHhccCCCcEEEEEE
Q 043102 448 -------HEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 448 -------~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.++...+++++.++|||||++++..
T Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 109 GSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp HHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred hhhhhhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence 0122789999999999999999943
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.2e-05 Score=80.04 Aligned_cols=115 Identities=7% Similarity=0.062 Sum_probs=74.8
Q ss_pred Ceehhhc---------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcC--------CCC-----------------C-
Q 043102 399 REVIFLG---------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEAD--------LER-----------------N- 442 (525)
Q Consensus 399 ~rVLDIG---------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~g--------l~d-----------------~- 442 (525)
.+||||| +..+++. .+++|+|||+|++|++.|++++...+ +.+ .
T Consensus 79 ~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~~ 158 (274)
T 2qe6_A 79 SQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFSRP 158 (274)
T ss_dssp CEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTTSC
T ss_pred CEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCCCC
Confidence 4899999 2233333 47999999999999999999974311 110 1
Q ss_pred Cc--------ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcC
Q 043102 443 DR--------SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAAS 514 (525)
Q Consensus 443 D~--------~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~ 514 (525)
|. ++..+.....++++.++|||||++++....... . .......+.+.+...| ....+.+++.+.+ .
T Consensus 159 d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~-~-~~~~~~~~~~~~~~~~-~~~~s~~ei~~~l---~ 232 (274)
T 2qe6_A 159 AAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG-L-PAQQKLARITRENLGE-GWARTPEEIERQF---G 232 (274)
T ss_dssp CEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS-C-HHHHHHHHHHHHHHSC-CCCBCHHHHHHTT---T
T ss_pred EEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc-h-HHHHHHHHHHHhcCCC-CccCCHHHHHHHh---C
Confidence 33 233345889999999999999999998876532 1 0001111222222223 4668999999887 2
Q ss_pred CcEEE
Q 043102 515 RLWYN 519 (525)
Q Consensus 515 gl~V~ 519 (525)
||++.
T Consensus 233 G~~l~ 237 (274)
T 2qe6_A 233 DFELV 237 (274)
T ss_dssp TCEEC
T ss_pred CCeEc
Confidence 78764
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.09 E-value=3.4e-06 Score=76.89 Aligned_cols=80 Identities=14% Similarity=0.040 Sum_probs=61.4
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc--------------ccC---
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------DR--------------SFG--- 447 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~--------------~vg--- 447 (525)
+..+||||| ++.++++..++|+|+|+|+++++.|+++++..++.++ |. ...
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~ 110 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 110 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCCC
Confidence 345999999 6778876336999999999999999999988877533 21 111
Q ss_pred -cccHHHHHHHHH--hccCCCcEEEEEEecCC
Q 043102 448 -HEYMEEFFGCCE--SLIAKDGLFVLQFISIP 476 (525)
Q Consensus 448 -~~~~~~~f~~i~--r~LkpGG~~viq~i~~~ 476 (525)
...++..++.+. ++|||||++++......
T Consensus 111 ~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 111 AKETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred CcchHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 245677788887 99999999999876543
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.2e-06 Score=79.38 Aligned_cols=123 Identities=12% Similarity=0.096 Sum_probs=78.6
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH---cCCC-------CC--Cc----cc--CcccHHH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE---ADLE-------RN--DR----SF--GHEYMEE 453 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~---~gl~-------d~--D~----~v--g~~~~~~ 453 (525)
..+||||| +..+++. |++|+|+|+|+++++.|+++..+ ..+. +. |. .+ ...+...
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~ 111 (230)
T 3cc8_A 33 WKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDPWA 111 (230)
T ss_dssp CSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSCHHH
T ss_pred CCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhcCCHHH
Confidence 34999999 6777876 89999999999999999987532 1111 11 33 11 1246689
Q ss_pred HHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHh---hcccC-CCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 454 FFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMK---EYIFP-GGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 454 ~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~---kYIFP-Gg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
+++++.++|||||++++..................|.. .+.-+ .....+..++.+.++++ ||++.-..
T Consensus 112 ~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gf~~~~~~ 183 (230)
T 3cc8_A 112 VIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKA-GYSISKVD 183 (230)
T ss_dssp HHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHT-TEEEEEEE
T ss_pred HHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHc-CCeEEEEE
Confidence 99999999999999999765432210000000000000 00001 12457899999999995 99987554
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.09 E-value=4.1e-06 Score=75.73 Aligned_cols=107 Identities=10% Similarity=0.032 Sum_probs=74.8
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHc-------CCCCC--Cc----cc--CcccHHHHHHH
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEA-------DLERN--DR----SF--GHEYMEEFFGC 457 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~-------gl~d~--D~----~v--g~~~~~~~f~~ 457 (525)
.+||||| +..+++. +.+|+|+|+|+++++.|+++.... .+.+. |. .+ ...+...++++
T Consensus 19 ~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~v~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~l~~ 97 (170)
T 3i9f_A 19 GVIVDYGCGNGFYCKYLLEF-ATKLYCIDINVIALKEVKEKFDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISE 97 (170)
T ss_dssp EEEEEETCTTCTTHHHHHTT-EEEEEEECSCHHHHHHHHHHCTTSEEESSGGGSCTTCEEEEEEESCSTTCSCHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHhh-cCeEEEEeCCHHHHHHHHHhCCCcEEEeCCCCCCCCceEEEEEccchhcccCHHHHHHH
Confidence 4999999 7778876 459999999999999999982211 11111 33 11 13578899999
Q ss_pred HHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 458 CESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 458 i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
+.++|||||++++.+....+..+. .+ .....+.+++.+.++ ||++.-..
T Consensus 98 ~~~~L~pgG~l~~~~~~~~~~~~~-----~~--------~~~~~~~~~~~~~l~---Gf~~~~~~ 146 (170)
T 3i9f_A 98 VKRILKDDGRVIIIDWRKENTGIG-----PP--------LSIRMDEKDYMGWFS---NFVVEKRF 146 (170)
T ss_dssp HHHHEEEEEEEEEEEECSSCCSSS-----SC--------GGGCCCHHHHHHHTT---TEEEEEEE
T ss_pred HHHhcCCCCEEEEEEcCccccccC-----ch--------HhhhcCHHHHHHHHh---CcEEEEcc
Confidence 999999999999988765543211 11 112258888888877 89887554
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.08 E-value=3.5e-06 Score=81.26 Aligned_cols=81 Identities=10% Similarity=0.160 Sum_probs=65.7
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC------C--------------c----
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN------D--------------R---- 444 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D--------------~---- 444 (525)
...+||||| ++.+|+.. +++|+++|+|+++++.|++++++.|+.++ | .
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 345999999 78888764 68999999999999999999988887543 2 2
Q ss_pred ---ccCcccHHHHHHHHHhccCCCcEEEEEEecCCC
Q 043102 445 ---SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPD 477 (525)
Q Consensus 445 ---~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~ 477 (525)
.....++..+++++.++|||||+++++.+....
T Consensus 152 V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g 187 (232)
T 3cbg_A 152 IFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVLWHG 187 (232)
T ss_dssp EEECSCGGGHHHHHHHHHHTEEEEEEEEEECTTGGG
T ss_pred EEECCCHHHHHHHHHHHHHHcCCCeEEEEeCCCcCC
Confidence 112467899999999999999999998876543
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=1.1e-05 Score=80.35 Aligned_cols=102 Identities=11% Similarity=0.028 Sum_probs=76.1
Q ss_pred CCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC------Cc------------ccC-cccH
Q 043102 398 VREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN------DR------------SFG-HEYM 451 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------------~vg-~~~~ 451 (525)
+.+|||+| ++.+|+. |+ +|+|+|+|+++++.|+++++..|+.++ |. .+. ....
T Consensus 126 ~~~VLDlgcG~G~~~~~la~~-~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~~~ 204 (278)
T 2frn_A 126 DELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVVRT 204 (278)
T ss_dssp TCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCSSG
T ss_pred CCEEEEecccCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCchhH
Confidence 45999999 8888886 55 799999999999999999998888754 33 111 2344
Q ss_pred HHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 452 EEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
..+++++.++|||||++++.+.+.... . .-....++.++++++ |+++..
T Consensus 205 ~~~l~~~~~~LkpgG~l~~~~~~~~~~----------------~---~~~~~~~i~~~~~~~-G~~~~~ 253 (278)
T 2frn_A 205 HEFIPKALSIAKDGAIIHYHNTVPEKL----------------M---PREPFETFKRITKEY-GYDVEK 253 (278)
T ss_dssp GGGHHHHHHHEEEEEEEEEEEEEEGGG----------------T---TTTTHHHHHHHHHHT-TCEEEE
T ss_pred HHHHHHHHHHCCCCeEEEEEEeecccc----------------c---cccHHHHHHHHHHHc-CCeeEE
Confidence 689999999999999999987652111 0 113456777777774 888765
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=5.2e-06 Score=80.05 Aligned_cols=113 Identities=12% Similarity=0.020 Sum_probs=76.6
Q ss_pred CCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcC--------------------------------
Q 043102 398 VREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEAD-------------------------------- 438 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~g-------------------------------- 438 (525)
..+||||| ++.+++. +. +|+|+|+|+++++.|+++++..+
T Consensus 57 ~~~vLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 135 (265)
T 2i62_A 57 GELLIDIGSGPTIYQLLSACE-SFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRA 135 (265)
T ss_dssp EEEEEEESCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred CCEEEEECCCccHHHHHHhhc-ccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhh
Confidence 34999999 6666664 66 99999999999999998875432
Q ss_pred C--------------CC---C--Cc--------cc--CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhH
Q 043102 439 L--------------ER---N--DR--------SF--GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDF 489 (525)
Q Consensus 439 l--------------~d---~--D~--------~v--g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~f 489 (525)
+ .+ . |. ++ ..+++..+++++.++|||||++++....... .|.. .
T Consensus 136 v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-~~~~---~--- 208 (265)
T 2i62_A 136 IKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSS-YYMI---G--- 208 (265)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC-EEEE---T---
T ss_pred heeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCc-eEEc---C---
Confidence 1 01 0 22 11 1236789999999999999999998754322 1110 0
Q ss_pred HhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 490 MKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 490 i~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
...++ ....+.+++.+.++++ ||++.-..
T Consensus 209 --~~~~~-~~~~~~~~~~~~l~~a-Gf~~~~~~ 237 (265)
T 2i62_A 209 --EQKFS-SLPLGWETVRDAVEEA-GYTIEQFE 237 (265)
T ss_dssp --TEEEE-CCCCCHHHHHHHHHHT-TCEEEEEE
T ss_pred --Ccccc-ccccCHHHHHHHHHHC-CCEEEEEE
Confidence 11111 2345788999999995 99886543
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.05 E-value=4.2e-06 Score=80.82 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=60.3
Q ss_pred CCeehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC--------------------Cc--ccCc
Q 043102 398 VREVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN--------------------DR--SFGH 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~--------------------D~--~vg~ 448 (525)
..+||||| ++.+|+. .+++|+|||+|+++++.|+++++..|+.+- |. ..+.
T Consensus 71 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~ 150 (240)
T 1xdz_A 71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAV 150 (240)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEECC
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEecc
Confidence 45999999 7777753 478999999999999999999988776421 22 1234
Q ss_pred ccHHHHHHHHHhccCCCcEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq 471 (525)
.++..+++.+.++|||||++++.
T Consensus 151 ~~~~~~l~~~~~~LkpgG~l~~~ 173 (240)
T 1xdz_A 151 ARLSVLSELCLPLVKKNGLFVAL 173 (240)
T ss_dssp SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCHHHHHHHHHHhcCCCCEEEEE
Confidence 67899999999999999999885
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=5.7e-06 Score=85.60 Aligned_cols=123 Identities=13% Similarity=0.152 Sum_probs=84.1
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHH----HcC----CCCCCc--------ccCcccHHHHH
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVK----EAD----LERNDR--------SFGHEYMEEFF 455 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~----~~g----l~d~D~--------~vg~~~~~~~f 455 (525)
.+||||| +..+++++ +++++++|+ +++++.|+++-. ... +...|. +...++...++
T Consensus 205 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l 283 (368)
T 3reo_A 205 TTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLL 283 (368)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGBCHHHHHHHH
T ss_pred CEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhcCCCEEEecCCCCCCCCCCEEEEechhhcCCHHHHHHHH
Confidence 4999999 77888764 789999999 889888875310 001 111144 23445567899
Q ss_pred HHHHhccCCCcEEEEEEecCCCcchhc----ccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEEe
Q 043102 456 GCCESLIAKDGLFVLQFISIPDERYNE----FRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAVS 523 (525)
Q Consensus 456 ~~i~r~LkpGG~~viq~i~~~~~~~~~----~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~~ 523 (525)
++++++|||||+++|.++..++..... .....++...-.++++...+.+++.+.++++ ||+++-...
T Consensus 284 ~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~A-GF~~v~~~~ 354 (368)
T 3reo_A 284 KNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMAS-GFRGFKVAS 354 (368)
T ss_dssp HHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHT-TCCEEEEEE
T ss_pred HHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHC-CCeeeEEEE
Confidence 999999999999999998877643111 0011222211124788899999999999996 999876543
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=5.4e-06 Score=78.72 Aligned_cols=81 Identities=10% Similarity=0.200 Sum_probs=65.8
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc------------------
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN------DR------------------ 444 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------------------ 444 (525)
...+||||| ++.+|+.. +++|+++|+|+++++.|+++++..|+.++ |.
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~ 148 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 148 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccE
Confidence 345999999 77888753 68999999999999999999999888654 22
Q ss_pred ---ccCcccHHHHHHHHHhccCCCcEEEEEEecCCC
Q 043102 445 ---SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPD 477 (525)
Q Consensus 445 ---~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~ 477 (525)
......+..+++.+.++|||||+++++.+....
T Consensus 149 v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g 184 (229)
T 2avd_A 149 AVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRG 184 (229)
T ss_dssp EEECSCSTTHHHHHHHHHHHEEEEEEEEEECCSGGG
T ss_pred EEECCCHHHHHHHHHHHHHHcCCCeEEEEECCCcCC
Confidence 112456889999999999999999998776543
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.04 E-value=5.2e-06 Score=79.96 Aligned_cols=80 Identities=16% Similarity=0.192 Sum_probs=64.8
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC------C-------------------
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN------D------------------- 443 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D------------------- 443 (525)
+..+||||| ++.+++.. +++|+++|+|+++++.|++++++.|+.++ |
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 139 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS 139 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence 345999999 77888764 68999999999999999999988776542 2
Q ss_pred ------c-------ccCcccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 444 ------R-------SFGHEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 444 ------~-------~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
. ..+.+++..+++.+.++|||||++++..+...
T Consensus 140 ~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 185 (239)
T 2hnk_A 140 DFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNVLWD 185 (239)
T ss_dssp TTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred cccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEccccC
Confidence 1 11356788999999999999999999876554
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.03 E-value=4.5e-06 Score=79.12 Aligned_cols=118 Identities=13% Similarity=0.094 Sum_probs=74.5
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHH-H--HcC-----CCCC--Cc----cc--CcccHHHHH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKV-K--EAD-----LERN--DR----SF--GHEYMEEFF 455 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~-~--~~g-----l~d~--D~----~v--g~~~~~~~f 455 (525)
..+||||| +..+++. +|+|+|+++++.|+++- . ... +.+. |. .+ ...+...++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l 122 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERAL 122 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhcCCEEEEcccccCCCCCCCeeEEEEcchHhhccCHHHHH
Confidence 45999999 5555543 99999999999999860 0 000 1111 33 11 135678999
Q ss_pred HHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEEe
Q 043102 456 GCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAVS 523 (525)
Q Consensus 456 ~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~~ 523 (525)
+++.++|||||++++............+... ......+......+..++.+.++++ ||++.-...
T Consensus 123 ~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~-Gf~~~~~~~ 187 (219)
T 1vlm_A 123 KEAYRILKKGGYLIVGIVDRESFLGREYEKN--KEKSVFYKNARFFSTEELMDLMRKA-GFEEFKVVQ 187 (219)
T ss_dssp HHHHHHEEEEEEEEEEEECSSSHHHHHHHHT--TTC-CCSTTCCCCCHHHHHHHHHHT-TCEEEEEEE
T ss_pred HHHHHHcCCCcEEEEEEeCCccHHHHHHHHH--hcCcchhcccccCCHHHHHHHHHHC-CCeEEEEec
Confidence 9999999999999998765332110000000 0001112234667999999999995 999876543
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=97.98 E-value=7.9e-06 Score=76.20 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=61.9
Q ss_pred CCCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc--ccCcccH
Q 043102 397 KVREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR--SFGHEYM 451 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~--~vg~~~~ 451 (525)
+..+||||| ++.+++.. +++|+|+|+|+++++.|+++++..++.+- |. .-+..++
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~~~~ 144 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFASL 144 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSSSH
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEeccCCH
Confidence 356999999 77788763 78999999999999999999988776422 22 1234678
Q ss_pred HHHHHHHHhccCCCcEEEEEE
Q 043102 452 EEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~ 472 (525)
..+++.+.++|||||++++..
T Consensus 145 ~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 145 NDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp HHHHHHHTTSEEEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEEe
Confidence 999999999999999999863
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=97.98 E-value=8.7e-06 Score=74.29 Aligned_cols=79 Identities=15% Similarity=0.061 Sum_probs=60.2
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------C----------------c----
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------D----------------R---- 444 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D----------------~---- 444 (525)
+..+|||+| ++.++++...+|+|+|+|+++++.|+++++..++.++ | .
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~ 123 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD 123 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEEC
Confidence 345999999 6667775347999999999999999999988776432 1 1
Q ss_pred -ccCcccHHHHHHHH--HhccCCCcEEEEEEecC
Q 043102 445 -SFGHEYMEEFFGCC--ESLIAKDGLFVLQFISI 475 (525)
Q Consensus 445 -~vg~~~~~~~f~~i--~r~LkpGG~~viq~i~~ 475 (525)
.......+..++.+ .++|||||++++.....
T Consensus 124 ~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 124 PPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp CCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCCchhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 01134567888888 89999999999976543
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=6.3e-06 Score=80.93 Aligned_cols=75 Identities=11% Similarity=0.043 Sum_probs=60.8
Q ss_pred CCeehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC--------------------Cc--ccCc
Q 043102 398 VREVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN--------------------DR--SFGH 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~--------------------D~--~vg~ 448 (525)
..+||||| ++.+|.. .+++|+|||+|+++++.|++++++.|+.+- |. .-..
T Consensus 81 ~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a~ 160 (249)
T 3g89_A 81 PLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAV 160 (249)
T ss_dssp SCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEESS
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECCc
Confidence 35999999 7888876 478999999999999999999998887532 11 1123
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.+++.+++.+.++|||||++++..
T Consensus 161 ~~~~~ll~~~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 161 APLCVLSELLLPFLEVGGAAVAMK 184 (249)
T ss_dssp CCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHcCCCeEEEEEe
Confidence 578999999999999999998743
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=97.98 E-value=5.5e-05 Score=79.63 Aligned_cols=147 Identities=12% Similarity=0.132 Sum_probs=88.3
Q ss_pred cEEEEeCCCceEeCCEEEEecChHHHHHhhcCCCCHHHHhhccCCc-----eeEeccCCCCCCCCCCCccccccccCCCC
Q 043102 112 SCTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH-----DIFLHCDKNSMPQNPAAWSAWSFLGSLDS 186 (525)
Q Consensus 112 gv~v~~~~g~~e~fD~VV~A~hadqAL~lL~~~~t~~E~~iLg~f~-----~~vlHtD~s~mP~~~~aWaswNy~~~~~~ 186 (525)
++.|.+.+| +..+|+||+|+++.++.+||.+ +.. +.|..++ .+.+.-|... +.. +...-|+...+.
T Consensus 266 ~~~v~~~~g-~~~ad~vV~a~p~~~~~~ll~~-~~~---~~~~~~~~~~~~~v~l~~~~~~-~~~---~~g~g~l~~~~~ 336 (475)
T 3lov_A 266 RYRLKTDHG-PEYADYVLLTIPHPQVVQLLPD-AHL---PELEQLTTHSTATVTMIFDQQQ-SLP---IEGTGFVVNRRA 336 (475)
T ss_dssp EEEEECTTC-CEEESEEEECSCHHHHHHHCTT-SCC---HHHHTCCEEEEEEEEEEEECCS-SCS---SSSSEEEECTTS
T ss_pred EEEEEECCC-eEECCEEEECCCHHHHHHHcCc-cCH---HHHhcCCCCeEEEEEEEECCcC-CCC---CCCEEEEecCCC
Confidence 688998888 7899999999999999999975 432 5566666 5566555544 211 111111111100
Q ss_pred C--------------CCCCCCCCeE-EEcC-C---------------------------CCCCcc-eeeEEEecCCCCCH
Q 043102 187 K--------------NLGETSLPYL-VTLN-P---------------------------DHAPEH-TLLKWSTGPPVPFV 222 (525)
Q Consensus 187 ~--------------nl~~~~~~~f-vTLN-p---------------------------~~~p~~-il~~~~y~HPv~~~ 222 (525)
. +..+ +..++ +++. + ..+|.. .+.+|.+.-|.+++
T Consensus 337 ~~~~~~~~~~s~~~~~~~p-~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~g~~~~p~~~~v~~w~~a~p~~~~ 415 (475)
T 3lov_A 337 PYSITACTAIDQKWNHSAP-DHTVLRAFVGRPGNDHLVHESDEVLQQAVLQDLEKICGRTLEPKQVIISRLMDGLPAYTV 415 (475)
T ss_dssp SCSEEEEEEHHHHCTTTCT-TEEEEEEEECBTTBCGGGGSCHHHHHHHHHHHHHHHHSSCCCCSEEEEEEEEEEEECCCT
T ss_pred CCceEEEEEEcccCCCCCC-CcEEEEEEeCCCCCCcccCCCHHHHHHHHHHHHHHHhCCCCCCeEEEEEEcccCCCCCCC
Confidence 0 0000 11111 1110 0 001222 46689888888888
Q ss_pred HHHHHHHHhhh-h-cCCCCeEEeccCCCCCCchhhhchHHHHHhhhcC
Q 043102 223 AASKASLELGH-I-QGRRGIWFRGAYQGYGFHEDGLKDLSINSCMTYG 268 (525)
Q Consensus 223 ~a~~aq~~l~~-i-qG~~~~~fcGay~g~GfHEdg~~Sgl~aA~~llG 268 (525)
........+.. + +...+++|||+|+...-.|+|+.||.++|+.+++
T Consensus 416 g~~~~~~~~~~~l~~~~~~l~~aG~~~~g~g~~~a~~sG~~aA~~i~~ 463 (475)
T 3lov_A 416 GHADRIQRVREEVLAQYPGIYLAGLAYDGVGLPDCVASAKTMIESIEL 463 (475)
T ss_dssp THHHHHHHHHHHHHHHSTTEEECSTTTSCSSHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhhCCCEEEEccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 76544333433 2 2346899999887655579999999999999853
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.96 E-value=9.7e-06 Score=79.23 Aligned_cols=73 Identities=22% Similarity=0.246 Sum_probs=58.6
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc---------------cc----
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------DR---------------SF---- 446 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~---------------~v---- 446 (525)
..+||||| ++.+|++..++|+|||+|+++++.|+++++..++.++ |. ..
T Consensus 50 ~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy 129 (259)
T 3lpm_A 50 KGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPPY 129 (259)
T ss_dssp CCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCCC
T ss_pred CCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCCC
Confidence 45999999 7788877555999999999999999999998888754 21 00
Q ss_pred ------Cc---------------ccHHHHHHHHHhccCCCcEEEE
Q 043102 447 ------GH---------------EYMEEFFGCCESLIAKDGLFVL 470 (525)
Q Consensus 447 ------g~---------------~~~~~~f~~i~r~LkpGG~~vi 470 (525)
+. ..+..+++.+.++|||||++++
T Consensus 130 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 174 (259)
T 3lpm_A 130 FATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF 174 (259)
T ss_dssp -----------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE
Confidence 00 2356799999999999999998
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=4.8e-06 Score=78.22 Aligned_cols=74 Identities=15% Similarity=0.134 Sum_probs=56.6
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcC--------CCC----C--Cc--------ccC-cc
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEAD--------LER----N--DR--------SFG-HE 449 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~g--------l~d----~--D~--------~vg-~~ 449 (525)
.+||||| +..+++. +.+|+|+|+|+++++.|++++...+ +.+ . |. |+. .+
T Consensus 53 ~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~~ 131 (216)
T 3ofk_A 53 SNGLEIGCAAGAFTEKLAPH-CKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYYLEDMT 131 (216)
T ss_dssp EEEEEECCTTSHHHHHHGGG-EEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGGSSSHH
T ss_pred CcEEEEcCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHhCCCHH
Confidence 3999999 6677765 7899999999999999999976532 000 0 33 333 24
Q ss_pred cHHHHHHHHHhccCCCcEEEEEEe
Q 043102 450 YMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 450 ~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
.+..+++++.++|||||++++.+.
T Consensus 132 ~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 132 QMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp HHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCCEEEEEec
Confidence 557889999999999999998654
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.5e-06 Score=81.52 Aligned_cols=104 Identities=14% Similarity=0.085 Sum_probs=67.7
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----Cc------------ccCcccHHH
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----DR------------SFGHEYMEE 453 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D~------------~vg~~~~~~ 453 (525)
+..+||||| +..+++. +++|+|+|+|+++++.|+++++..|+..- |. .+.......
T Consensus 77 ~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~ 155 (210)
T 3lbf_A 77 PQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPE 155 (210)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSBCSS
T ss_pred CCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccchhh
Confidence 345999999 7778876 89999999999999999999998776521 21 000001112
Q ss_pred HHHHHHhccCCCcEEEEEEecCCCcc-hhcccCchhHHhhcccCCCCCCC
Q 043102 454 FFGCCESLIAKDGLFVLQFISIPDER-YNEFRLSSDFMKEYIFPGGCLPS 502 (525)
Q Consensus 454 ~f~~i~r~LkpGG~~viq~i~~~~~~-~~~~~~~~~fi~kYIFPGg~LPs 502 (525)
+.+.+.++|||||++++..-. .... ....+....|..+.++|-.++|-
T Consensus 156 ~~~~~~~~L~pgG~lv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~pl 204 (210)
T 3lbf_A 156 IPTALMTQLDEGGILVLPVGE-EHQYLKRVRRRGGEFIIDTVEAVRFVPL 204 (210)
T ss_dssp CCTHHHHTEEEEEEEEEEECS-SSCEEEEEEEETTEEEEEEEEECCCCBC
T ss_pred hhHHHHHhcccCcEEEEEEcC-CceEEEEEEEcCCeEEEEEeccEEEEEc
Confidence 224789999999999996544 2221 11112234555666666666654
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=7.4e-07 Score=85.56 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=56.7
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc-----cc-C
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR-----SF-G 447 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~-----~v-g 447 (525)
+..+||||| ++.+++. |++|+|+|+|+++++.|+++++..|+.++ |. .. +
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~ 156 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT-GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGG 156 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCSS
T ss_pred CCCEEEECccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcCC
Confidence 456999999 7888875 89999999999999999999998887433 22 01 1
Q ss_pred cccHHHHHHHHHhccCCCcEEEEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
..+....+.++.++|||||++++.
T Consensus 157 ~~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 157 PDYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp GGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred cchhhhHHHHHHhhcCCcceeHHH
Confidence 233334666789999999997664
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=1.2e-05 Score=83.06 Aligned_cols=123 Identities=13% Similarity=0.095 Sum_probs=84.1
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHH----HcC----CCCCCc--------ccCcccHHHHH
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVK----EAD----LERNDR--------SFGHEYMEEFF 455 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~----~~g----l~d~D~--------~vg~~~~~~~f 455 (525)
.+||||| +..+++++ +++++++|+ +++++.|+++-. ... +...|. +...++...++
T Consensus 203 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L 281 (364)
T 3p9c_A 203 GTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLL 281 (364)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhcCCeEEEeCCcCCCCCCCCEEEehHHhccCCHHHHHHHH
Confidence 4999999 77788764 789999999 888888775310 001 111144 23445667899
Q ss_pred HHHHhccCCCcEEEEEEecCCCcchhccc----CchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEEe
Q 043102 456 GCCESLIAKDGLFVLQFISIPDERYNEFR----LSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAVS 523 (525)
Q Consensus 456 ~~i~r~LkpGG~~viq~i~~~~~~~~~~~----~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~~ 523 (525)
++++++|||||+++|.++..++....... ...++...-..+++...+.+++.+.++++ ||+++-...
T Consensus 282 ~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~A-GF~~v~~~~ 352 (364)
T 3p9c_A 282 KNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGA-GFTGVKSTY 352 (364)
T ss_dssp HHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHT-TCCEEEEEE
T ss_pred HHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHC-CCceEEEEE
Confidence 99999999999999999887764311100 01222211124788889999999999995 999876543
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.93 E-value=1.1e-05 Score=78.59 Aligned_cols=75 Identities=12% Similarity=0.127 Sum_probs=55.4
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHH------cCCCCC-----Cc----------------
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKE------ADLERN-----DR---------------- 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~------~gl~d~-----D~---------------- 444 (525)
.+||||| ++.+|+.. ++.|+|||+|++|++.|++++++ .++..- |+
T Consensus 48 ~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~v 127 (235)
T 3ckk_A 48 VEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKM 127 (235)
T ss_dssp EEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEEE
T ss_pred CeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeEE
Confidence 3899999 77888764 68999999999999999998764 233211 22
Q ss_pred --ccCccc-----------HHHHHHHHHhccCCCcEEEEEEe
Q 043102 445 --SFGHEY-----------MEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 445 --~vg~~~-----------~~~~f~~i~r~LkpGG~~viq~i 473 (525)
+..... .+.+++++.++|||||++++.+-
T Consensus 128 ~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 128 FFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 111110 15799999999999999998753
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=7.7e-05 Score=79.87 Aligned_cols=148 Identities=15% Similarity=0.166 Sum_probs=89.6
Q ss_pred eCCCceEeCCEEEEecChHHHHHhhcC---CCCHHHHhhccCCc-----eeEeccCCCCCCCCCCCccccccccCCCC--
Q 043102 117 CGDGSREFYNSCVMALHAPDALKILGN---QATFDETRTGGAFH-----DIFLHCDKNSMPQNPAAWSAWSFLGSLDS-- 186 (525)
Q Consensus 117 ~~~g~~e~fD~VV~A~hadqAL~lL~~---~~t~~E~~iLg~f~-----~~vlHtD~s~mP~~~~aWaswNy~~~~~~-- 186 (525)
..+|++..||+||+|+|++++.+||.+ ..+++.++.|+.++ .+.+.-|....+ +. .-.+|-|..+.+.
T Consensus 251 ~~~G~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~l~~l~y~s~~~v~l~~~~~~~~-~~-~~~~~i~vp~~~~~~ 328 (484)
T 4dsg_A 251 FSNGEVVSYDYLISTVPFDNLLRMTKGTGFKGYDEWPAIADKMVYSSTNVIGIGVKGTPPP-HL-KTACWLYFPEDTSPF 328 (484)
T ss_dssp ETTSCEEECSEEEECSCHHHHHHHEECSSCTTGGGHHHHHHHCCEEEEEEEEEEEESCCCG-GG-TTCCEEECCSTTCSC
T ss_pred ECCCCEEECCEEEECCCHHHHHHHhhccCCCCCHHHHHHHhCCCcCceEEEEEEEcCCCcc-cC-CCCeEEEEEcCCCeE
Confidence 367777899999999999999999974 14566778899888 333334433211 00 0012222221110
Q ss_pred ------CCCC----CCCCCeE---EEcCCC---------------------CCCc-c----eeeEEEecCCCCCHHHHHH
Q 043102 187 ------KNLG----ETSLPYL---VTLNPD---------------------HAPE-H----TLLKWSTGPPVPFVAASKA 227 (525)
Q Consensus 187 ------~nl~----~~~~~~f---vTLNp~---------------------~~p~-~----il~~~~y~HPv~~~~a~~a 227 (525)
+|+. +.++.++ ++-.+. ..++ + .+.+|.+.-|+|++...+.
T Consensus 329 ~ri~~~s~~~p~~ap~g~~~l~~e~~~~~~~~~~d~~l~~~a~~~L~~~~~~~~~~~~~~~~v~r~~~~yP~y~~~~~~~ 408 (484)
T 4dsg_A 329 YRATVFSNYSKYNVPEGHWSLMLEVSESKYKPVNHSTLIEDCIVGCLASNLLLPEDLLVSKWHYRIEKGYPTPFIGRNNL 408 (484)
T ss_dssp SEEECGGGTCGGGSCTTEEEEEEEEEEBTTBCCCTTSHHHHHHHHHHHTTSCCTTCCEEEEEEEEEEEEEECCBTTHHHH
T ss_pred EEEEeecCCCcccCCCCeEEEEEEEecCcCCcCCHHHHHHHHHHHHHHcCCCCccceEEEEEEEEeCccccCCCccHHHH
Confidence 0111 0011111 121110 1122 2 2458999999999987655
Q ss_pred HHHhhh-hcCCCCeEEeccC--CCC--CCchhhhchHHHHHhhhc
Q 043102 228 SLELGH-IQGRRGIWFRGAY--QGY--GFHEDGLKDLSINSCMTY 267 (525)
Q Consensus 228 q~~l~~-iqG~~~~~fcGay--~g~--GfHEdg~~Sgl~aA~~ll 267 (525)
-+++.. ++.. +|++||.| +.| +-.++++.||+.||+.++
T Consensus 409 ~~~~~~~l~~~-~l~~~Gr~g~~~y~v~~~d~~i~sg~~aa~~i~ 452 (484)
T 4dsg_A 409 LEKAQPELMSR-CIYSRGRFGAWRYEVGNQDHSFMQGVEAIDHVL 452 (484)
T ss_dssp HHHHHHHHHHT-TEEECSTTTTCCGGGCSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-CcEeecCCcccccCCCChHHHHHHHHHHHHHHH
Confidence 544443 4445 89999998 456 458999999999999987
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=97.93 E-value=1.5e-05 Score=75.22 Aligned_cols=75 Identities=21% Similarity=0.340 Sum_probs=58.1
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC-------------------Cc---ccCc
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN-------------------DR---SFGH 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-------------------D~---~vg~ 448 (525)
..+||||| ++.+|+.. +++|+|||+|+++++.|+++++..|+..- |. ....
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~ 121 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 121 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred CCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECCC
Confidence 35999999 77788764 68999999999999999999988776321 11 0010
Q ss_pred c-----------cHHHHHHHHHhccCCCcEEEEEE
Q 043102 449 E-----------YMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 449 ~-----------~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
. .++.+++++.++|||||++++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 122 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 0 23689999999999999999865
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.93 E-value=9.9e-06 Score=76.95 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=57.9
Q ss_pred CCeehhhc-------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----C-------------ccc-------
Q 043102 398 VREVIFLG-------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN----D-------------RSF------- 446 (525)
Q Consensus 398 ~~rVLDIG-------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----D-------------~~v------- 446 (525)
..+||||| ++.+++..+++|+|+|+|+++++.|+++++..++... | ..+
T Consensus 56 ~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~~~ 135 (230)
T 3evz_A 56 GEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPYYD 135 (230)
T ss_dssp SCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCCC-
T ss_pred CCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCCcC
Confidence 35999999 5677775589999999999999999999988775211 2 101
Q ss_pred ------------------CcccHHHHHHHHHhccCCCcEEEEE
Q 043102 447 ------------------GHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 447 ------------------g~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
+...+..+++++.++|||||++++.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (230)
T 3evz_A 136 KPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY 178 (230)
T ss_dssp --------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence 1222588999999999999999985
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=97.93 E-value=4.4e-05 Score=80.88 Aligned_cols=146 Identities=12% Similarity=0.096 Sum_probs=83.7
Q ss_pred cEEEEeCCCceEeCCEEEEecChHHHHHhhcC-CCCHHHHhhccCCc-----eeEeccCCCCCCCCCCCccccccccCCC
Q 043102 112 SCTVVCGDGSREFYNSCVMALHAPDALKILGN-QATFDETRTGGAFH-----DIFLHCDKNSMPQNPAAWSAWSFLGSLD 185 (525)
Q Consensus 112 gv~v~~~~g~~e~fD~VV~A~hadqAL~lL~~-~~t~~E~~iLg~f~-----~~vlHtD~s~mP~~~~aWaswNy~~~~~ 185 (525)
+|.|.+.+|.+..+|+||+|++...+.+|+-. ..+...++.+..+. .++|+-|... |..|.+....+
T Consensus 288 ~v~v~~~~g~~~~ad~vI~a~~~~~l~~i~~~p~lp~~~~~ai~~~~~~~~~kv~l~~~~~~-------~~~~~g~~~~~ 360 (495)
T 2vvm_A 288 AARVTARDGREFVAKRVVCTIPLNVLSTIQFSPALSTERISAMQAGHVSMCTKVHAEVDNKD-------MRSWTGIAYPF 360 (495)
T ss_dssp SEEEEETTCCEEEEEEEEECCCGGGGGGSEEESCCCHHHHHHHHHCCCCCCEEEEEEESCGG-------GGGEEEEECSS
T ss_pred EEEEEECCCCEEEcCEEEECCCHHHHhheeeCCCCCHHHHHHHHhcCCCceeEEEEEECCcc-------CCCceeEecCC
Confidence 68888888877899999999999998888632 12444555665554 8888877643 33333222111
Q ss_pred CC--------CCCCCCCCeEEEcCC-----------------------C-CCCcc-eeeEEE---e---cCCCCCHHHH-
Q 043102 186 SK--------NLGETSLPYLVTLNP-----------------------D-HAPEH-TLLKWS---T---GPPVPFVAAS- 225 (525)
Q Consensus 186 ~~--------nl~~~~~~~fvTLNp-----------------------~-~~p~~-il~~~~---y---~HPv~~~~a~- 225 (525)
.. ..+ .+..+++.+.+ . .+|.. +..+|. | ..+.+.+...
T Consensus 361 ~~~~~~~~~~~~~-~~~~vl~~~~~~~~~~~~~e~~~~~~~~L~~~~~~~~~~~~~~~~~W~~dp~~~g~y~~~~~g~~~ 439 (495)
T 2vvm_A 361 NKLCYAIGDGTTP-AGNTHLVCFGNSANHIQPDEDVRETLKAVGQLAPGTFGVKRLVFHNWVKDEFAKGAWFFSRPGMVS 439 (495)
T ss_dssp CSSCEEEEEEECT-TSCEEEEEEECSTTCCCTTTCHHHHHHHHHTTSTTSCCEEEEEECCTTTCTTTSSSSCCCCTTHHH
T ss_pred CCcEEEecCCCCC-CCCeEEEEEeCccccCCCHHHHHHHHHHHHHhcCCCCCceEEEEeEcCCCCCCCCCccCcCCCcch
Confidence 10 011 11233332211 1 01111 122341 1 2223334333
Q ss_pred HHHHHhhhhcCCCCeEEeccCCC---CCCchhhhchHHHHHhhhc
Q 043102 226 KASLELGHIQGRRGIWFRGAYQG---YGFHEDGLKDLSINSCMTY 267 (525)
Q Consensus 226 ~aq~~l~~iqG~~~~~fcGay~g---~GfHEdg~~Sgl~aA~~ll 267 (525)
.....+.. ..++|+|||+|+. +|+-|+|+.||++||++++
T Consensus 440 ~~~~~l~~--p~~~l~fAGe~t~~~~~g~veGAi~SG~raA~~i~ 482 (495)
T 2vvm_A 440 ECLQGLRE--KHGGVVFANSDWALGWRSFIDGAIEEGTRAARVVL 482 (495)
T ss_dssp HHHHHHHC--CBTTEEECCGGGCSSSTTSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhC--cCCCEEEechhhhcCCceEEEhHHHHHHHHHHHHH
Confidence 12233332 3568999999974 6899999999999999874
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=97.92 E-value=6.9e-06 Score=79.41 Aligned_cols=77 Identities=16% Similarity=0.097 Sum_probs=62.3
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc------------ccCccc
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN------DR------------SFGHEY 450 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------------~vg~~~ 450 (525)
+..+|||+| +..+++.. +++|+|+|+|+++++.|+++++..|+.++ |. .....+
T Consensus 93 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~~ 172 (255)
T 3mb5_A 93 PGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVILDLPQ 172 (255)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCSEEEEEECSSC
T ss_pred CCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCCcCEEEECCCC
Confidence 345999999 77777762 78999999999999999999999888764 22 123445
Q ss_pred HHHHHHHHHhccCCCcEEEEEEe
Q 043102 451 MEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~i 473 (525)
...+++++.++|||||++++...
T Consensus 173 ~~~~l~~~~~~L~~gG~l~~~~~ 195 (255)
T 3mb5_A 173 PERVVEHAAKALKPGGFFVAYTP 195 (255)
T ss_dssp GGGGHHHHHHHEEEEEEEEEEES
T ss_pred HHHHHHHHHHHcCCCCEEEEEEC
Confidence 56899999999999999998654
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=1.9e-05 Score=71.74 Aligned_cols=76 Identities=17% Similarity=0.221 Sum_probs=61.0
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------C------------c--ccC-cc
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------D------------R--SFG-HE 449 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D------------~--~vg-~~ 449 (525)
+..+||||| ++.+++. +++|+|+|+|+++++.|+++++..++..+ | . ..+ ..
T Consensus 33 ~~~~vldiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 111 (192)
T 1l3i_A 33 KNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGG 111 (192)
T ss_dssp TTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCTT
T ss_pred CCCEEEEECCCCCHHHHHHHHh-cCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCCCEEEECCchH
Confidence 345999999 6777775 59999999999999999999988877433 2 1 111 25
Q ss_pred cHHHHHHHHHhccCCCcEEEEEEe
Q 043102 450 YMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 450 ~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
++..+++.+.++|||||++++...
T Consensus 112 ~~~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 112 ELQEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp CHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCcEEEEEec
Confidence 689999999999999999998654
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.90 E-value=8.5e-06 Score=84.71 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=62.1
Q ss_pred cCCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC------C-----------c-------
Q 043102 396 FKVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN------D-----------R------- 444 (525)
Q Consensus 396 f~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~------D-----------~------- 444 (525)
+++.+||||| ++.+++. |+ +|+|||+| +|++.|+++++..|+.++ | .
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred CCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 4556999999 7778875 76 99999999 999999999999888764 2 2
Q ss_pred cc--CcccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 445 SF--GHEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 445 ~v--g~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
+. ....+..+++.+.++|||||+++++..+
T Consensus 140 ~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~ 171 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKPTGVMYPSHAR 171 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred hcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence 11 1256888999999999999999886543
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=97.90 E-value=1.5e-05 Score=71.40 Aligned_cols=77 Identities=17% Similarity=0.204 Sum_probs=59.4
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----C-------------c--------cc
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN----D-------------R--------SF 446 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----D-------------~--------~v 446 (525)
..+|||+| ++.++++ +.+|+|+|+|+++++.|+++++..++... | . ..
T Consensus 42 ~~~vLD~GcG~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~ 120 (171)
T 1ws6_A 42 RGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPY 120 (171)
T ss_dssp CCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCT
T ss_pred CCeEEEeCCCcCHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCC
Confidence 45999999 7777775 88899999999999999999987765211 1 1 01
Q ss_pred CcccHHHHHHHHH--hccCCCcEEEEEEecCC
Q 043102 447 GHEYMEEFFGCCE--SLIAKDGLFVLQFISIP 476 (525)
Q Consensus 447 g~~~~~~~f~~i~--r~LkpGG~~viq~i~~~ 476 (525)
. ...+..++.+. ++|||||++++......
T Consensus 121 ~-~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 121 A-MDLAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp T-SCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred c-hhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 1 45677888888 99999999999766543
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=97.88 E-value=1.6e-05 Score=77.02 Aligned_cols=74 Identities=8% Similarity=0.128 Sum_probs=56.3
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHc--------CCCCC-----Cc--------------
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEA--------DLERN-----DR-------------- 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~--------gl~d~-----D~-------------- 444 (525)
.+||||| ++.+|+.. +++|+|||+|+++++.|+++++.. ++..- |.
T Consensus 51 ~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~d 130 (246)
T 2vdv_E 51 VTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQLS 130 (246)
T ss_dssp EEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCEE
T ss_pred CEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccccC
Confidence 4899999 77888764 579999999999999999998764 55321 22
Q ss_pred ----ccCccc-----------HHHHHHHHHhccCCCcEEEEEE
Q 043102 445 ----SFGHEY-----------MEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 445 ----~vg~~~-----------~~~~f~~i~r~LkpGG~~viq~ 472 (525)
++.... .+.+++++.++|||||++++.+
T Consensus 131 ~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 131 KMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp EEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 111111 1589999999999999999954
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=97.87 E-value=2.6e-05 Score=73.48 Aligned_cols=79 Identities=11% Similarity=0.054 Sum_probs=59.8
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC-CC------Cc----------c-c-------
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE-RN------DR----------S-F------- 446 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~-d~------D~----------~-v------- 446 (525)
..+|||+| ++.++++...+|+|||+|+++++.|+++++..|+. ++ |. . +
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 133 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP 133 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred CCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECC
Confidence 45999999 66666653359999999999999999999888873 22 22 1 1
Q ss_pred --CcccHHHHHHHH--HhccCCCcEEEEEEecCC
Q 043102 447 --GHEYMEEFFGCC--ESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 447 --g~~~~~~~f~~i--~r~LkpGG~~viq~i~~~ 476 (525)
.....+.+++.+ .++|||||++++......
T Consensus 134 ~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 134 PFHFNLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp CSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred CCCCccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 124577889999 678999999999776543
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=97.86 E-value=3.6e-05 Score=72.57 Aligned_cols=79 Identities=13% Similarity=0.056 Sum_probs=59.0
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----Cc------------------ccC
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----DR------------------SFG 447 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D~------------------~vg 447 (525)
+..+|||+| ++.++++...+|+|||+|+++++.|+++++..++..- |. ...
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 133 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence 345999999 6666765234999999999999999999988876211 21 112
Q ss_pred cccHHHHHHHHHh--ccCCCcEEEEEEecC
Q 043102 448 HEYMEEFFGCCES--LIAKDGLFVLQFISI 475 (525)
Q Consensus 448 ~~~~~~~f~~i~r--~LkpGG~~viq~i~~ 475 (525)
....+.+++.+.+ +|||||++++.....
T Consensus 134 ~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 134 RGLLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp TTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred CCcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 3467788888866 599999999977653
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.86 E-value=6e-05 Score=67.95 Aligned_cols=97 Identities=13% Similarity=0.148 Sum_probs=71.7
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc--ccCcccHH
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR--SFGHEYME 452 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~--~vg~~~~~ 452 (525)
+..+||||| ++.+++ .+++|+|+|+|+++++.|+++++..|+..- |. ..+..+..
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~~~~~~ 113 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFNKAFIGGTKNIE 113 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCSEEEECSCSCHH
T ss_pred CCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCcEEEECCcccHH
Confidence 345999999 677777 689999999999999999999998877321 22 11126789
Q ss_pred HHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 453 EFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
.+++++.++ |||++++...... ...++.+.+++. |+.+....
T Consensus 114 ~~l~~~~~~--~gG~l~~~~~~~~-------------------------~~~~~~~~l~~~-g~~~~~~~ 155 (183)
T 2yxd_A 114 KIIEILDKK--KINHIVANTIVLE-------------------------NAAKIINEFESR-GYNVDAVN 155 (183)
T ss_dssp HHHHHHHHT--TCCEEEEEESCHH-------------------------HHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHhhC--CCCEEEEEecccc-------------------------cHHHHHHHHHHc-CCeEEEEE
Confidence 999999999 9999998753210 145666777775 67776543
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.86 E-value=4.3e-06 Score=79.86 Aligned_cols=71 Identities=14% Similarity=0.109 Sum_probs=53.7
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHc-----CC----C---CC--CcccCcccHHHHHHH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEA-----DL----E---RN--DRSFGHEYMEEFFGC 457 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~-----gl----~---d~--D~~vg~~~~~~~f~~ 457 (525)
..+||||| +..+++. |++|+|+|+|+++++.|+++.... .+ . +. |..+...+...++++
T Consensus 49 ~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~~~~~l~~ 127 (226)
T 3m33_A 49 QTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRRGPTSVILR 127 (226)
T ss_dssp TCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEESCCSGGGGG
T ss_pred CCeEEEeCCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCCCHHHHHHH
Confidence 34999999 7778876 899999999999999999983211 11 0 11 332223467789999
Q ss_pred HHhccCCCcEEE
Q 043102 458 CESLIAKDGLFV 469 (525)
Q Consensus 458 i~r~LkpGG~~v 469 (525)
+.++|||||+++
T Consensus 128 ~~~~LkpgG~l~ 139 (226)
T 3m33_A 128 LPELAAPDAHFL 139 (226)
T ss_dssp HHHHEEEEEEEE
T ss_pred HHHHcCCCcEEE
Confidence 999999999998
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.8e-06 Score=81.24 Aligned_cols=107 Identities=10% Similarity=0.060 Sum_probs=71.1
Q ss_pred CCCeehhhc------HHHHHHhcC--CEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------CcccCcccH
Q 043102 397 KVREVIFLG------TIEVVKRTG--CKYTGITLAEKQLKYAGIKVKEADLERN-----------------DRSFGHEYM 451 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G--~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~~vg~~~~ 451 (525)
+..+||||| +..+++..| ++|+|+|+|+++++.|+++++..|+..- |..+...-.
T Consensus 77 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~ 156 (215)
T 2yxe_A 77 PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAG 156 (215)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEESSBB
T ss_pred CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEECCch
Confidence 345999999 677777654 8999999999999999999887665321 220000001
Q ss_pred HHHHHHHHhccCCCcEEEEEEecCCCcchhcc-cCchhHHhhcccCCCCCCCHH
Q 043102 452 EEFFGCCESLIAKDGLFVLQFISIPDERYNEF-RLSSDFMKEYIFPGGCLPSLS 504 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~-~~~~~fi~kYIFPGg~LPsl~ 504 (525)
..+.+++.++|||||++++...... .....+ +....|..++++|....|.+.
T Consensus 157 ~~~~~~~~~~L~pgG~lv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 209 (215)
T 2yxe_A 157 PKIPEPLIRQLKDGGKLLMPVGRYL-QRLVLAEKRGDEIIIKDCGPVAFVPLVG 209 (215)
T ss_dssp SSCCHHHHHTEEEEEEEEEEESSSS-EEEEEEEEETTEEEEEEEEEECCCBCBS
T ss_pred HHHHHHHHHHcCCCcEEEEEECCCC-cEEEEEEEeCCEEEEEEeccEEEEeccc
Confidence 1223589999999999999765443 322222 223457778888877777643
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=1.3e-05 Score=82.33 Aligned_cols=76 Identities=25% Similarity=0.292 Sum_probs=60.7
Q ss_pred cCCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc----cc
Q 043102 396 FKVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN------------------DR----SF 446 (525)
Q Consensus 396 f~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~----~v 446 (525)
+++.+||||| ++.+++. |+ +|+|||+| ++++.|+++++..|+.++ |. .+
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 142 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence 4456999999 7778876 65 99999999 599999999999887754 22 11
Q ss_pred -----CcccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 447 -----GHEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 447 -----g~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
.....+.+++++.++|||||+++.+..
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 174 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAPDGLIFPDRA 174 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEESCEE
T ss_pred cccccCchhHHHHHHHHHHhCCCCCEEccccc
Confidence 236788999999999999999985443
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.82 E-value=1.1e-05 Score=79.12 Aligned_cols=74 Identities=11% Similarity=0.166 Sum_probs=56.3
Q ss_pred CCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCC-C----CC-------------Cc---cc-C
Q 043102 398 VREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADL-E----RN-------------DR---SF-G 447 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl-~----d~-------------D~---~v-g 447 (525)
..+||||| +..+|+.- ..+|+|+|+|++|++.|++++++.+- . +. |. .+ -
T Consensus 78 G~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~~ 157 (233)
T 4df3_A 78 GDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADVAQ 157 (233)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEECCCC
T ss_pred CCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEeccC
Confidence 35999999 77888763 47999999999999999999866431 0 00 22 11 1
Q ss_pred cccHHHHHHHHHhccCCCcEEEEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
+.+...+++++.+.|||||++++-
T Consensus 158 ~~~~~~~l~~~~r~LKpGG~lvI~ 181 (233)
T 4df3_A 158 PEQAAIVVRNARFFLRDGGYMLMA 181 (233)
T ss_dssp TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ChhHHHHHHHHHHhccCCCEEEEE
Confidence 345678999999999999999874
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=2.5e-05 Score=82.80 Aligned_cols=81 Identities=20% Similarity=0.090 Sum_probs=60.5
Q ss_pred CCCeehhhc------HHHHHHhcCCE-EEEEcCChHHHHHHHHHH-------HHcCCC-CC------Cc-----------
Q 043102 397 KVREVIFLG------TIEVVKRTGCK-YTGITLAEKQLKYAGIKV-------KEADLE-RN------DR----------- 444 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~-VtGIdlS~eql~~Ar~r~-------~~~gl~-d~------D~----------- 444 (525)
++.+||||| ++.+|+..|+. |+|||+|+++++.|++++ +..|+. ++ |.
T Consensus 173 ~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~~ 252 (438)
T 3uwp_A 173 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIAN 252 (438)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHHHT
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccccCC
Confidence 445999999 77788777884 999999999999998854 344553 22 22
Q ss_pred ---c-----cCcccHHHHHHHHHhccCCCcEEEEEEecCCC
Q 043102 445 ---S-----FGHEYMEEFFGCCESLIAKDGLFVLQFISIPD 477 (525)
Q Consensus 445 ---~-----vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~ 477 (525)
. .-..+....+++++++|||||++++.....++
T Consensus 253 aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p~ 293 (438)
T 3uwp_A 253 TSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPL 293 (438)
T ss_dssp CSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSCSSCT
T ss_pred ccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeecccCC
Confidence 0 01246778889999999999999997666554
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.80 E-value=3.3e-05 Score=73.93 Aligned_cols=76 Identities=13% Similarity=0.070 Sum_probs=60.8
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------C------------c-ccCcccH
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------D------------R-SFGHEYM 451 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D------------~-~vg~~~~ 451 (525)
+..+|||+| ++.+++. +.+|+++|+|+++++.|+++.+..++..+ | . .....+.
T Consensus 91 ~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 169 (248)
T 2yvl_A 91 KEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDVREP 169 (248)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEECSSCG
T ss_pred CCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEECCcCH
Confidence 345999999 7788887 89999999999999999999988776433 2 1 1123345
Q ss_pred HHHHHHHHhccCCCcEEEEEEe
Q 043102 452 EEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~i 473 (525)
..+++.+.++|||||++++...
T Consensus 170 ~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 170 WHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp GGGHHHHHHHBCTTCEEEEEES
T ss_pred HHHHHHHHHHcCCCCEEEEEeC
Confidence 6889999999999999998764
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=2.1e-05 Score=82.27 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=60.7
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc-------cc--
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR-------SF-- 446 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~-------~v-- 446 (525)
..+|||+| ++.++++ |++|+|||+|+++++.|+++++..++... |. |.
T Consensus 234 ~~~VLDlGcG~G~~~~~la~~-g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~ 312 (381)
T 3dmg_A 234 GRQVLDLGAGYGALTLPLARM-GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVGG 312 (381)
T ss_dssp TCEEEEETCTTSTTHHHHHHT-TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTTC
T ss_pred CCEEEEEeeeCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhcc
Confidence 34999999 8888886 89999999999999999999988775422 22 22
Q ss_pred --CcccHHHHHHHHHhccCCCcEEEEEE
Q 043102 447 --GHEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 447 --g~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.......+++++.++|||||++++..
T Consensus 313 ~~~~~~~~~~l~~~~~~LkpGG~l~iv~ 340 (381)
T 3dmg_A 313 AVILDVAQAFVNVAAARLRPGGVFFLVS 340 (381)
T ss_dssp SSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 24567899999999999999999854
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=3.4e-05 Score=75.29 Aligned_cols=76 Identities=17% Similarity=0.139 Sum_probs=63.1
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc----------------ccCcc
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN------DR----------------SFGHE 449 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~----------------~vg~~ 449 (525)
.+||||| ++.+|+.. ..+|+++|+|++.++.|+++++..|++++ |. -+|..
T Consensus 17 ~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~Gg~ 96 (225)
T 3kr9_A 17 AILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGMGGR 96 (225)
T ss_dssp EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEECHH
T ss_pred CEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCCChH
Confidence 3999999 78888863 35899999999999999999999999875 22 12334
Q ss_pred cHHHHHHHHHhccCCCcEEEEEEec
Q 043102 450 YMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 450 ~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
-...++..+.+.|+|+|++++|.+.
T Consensus 97 ~i~~Il~~~~~~L~~~~~lVlq~~~ 121 (225)
T 3kr9_A 97 LIARILEEGLGKLANVERLILQPNN 121 (225)
T ss_dssp HHHHHHHHTGGGCTTCCEEEEEESS
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCC
Confidence 4688999999999999999999773
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.78 E-value=2.4e-05 Score=73.11 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=69.2
Q ss_pred CCCeehhhc--HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHc-----CC-----CCC--Cc----cc--CcccHHHHH
Q 043102 397 KVREVIFLG--TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEA-----DL-----ERN--DR----SF--GHEYMEEFF 455 (525)
Q Consensus 397 ~~~rVLDIG--a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~-----gl-----~d~--D~----~v--g~~~~~~~f 455 (525)
+..+||||| .-.++...++ +|+|+|+|+++++.|+++.... .+ .+. |. ++ ..++...++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l 115 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRLPYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVL 115 (211)
T ss_dssp CCSEEEEETCTTCHHHHHCCCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSCHHHHH
T ss_pred CCCeEEEECCCCCHhHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCCHHHHH
Confidence 345999999 1111222277 9999999999999999985211 01 111 33 11 134788999
Q ss_pred HHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHH
Q 043102 456 GCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMS 511 (525)
Q Consensus 456 ~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~ 511 (525)
+++.++|||||++++....... .+..............+....+.+.+++.+.++
T Consensus 116 ~~~~~~L~pgG~l~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~ 170 (211)
T 2gs9_A 116 LEARRVLRPGGALVVGVLEALS-PWAALYRRLGEKGVLPWAQARFLAREDLKALLG 170 (211)
T ss_dssp HHHHHHEEEEEEEEEEEECTTS-HHHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC
T ss_pred HHHHHHcCCCCEEEEEecCCcC-cHHHHHHHHhhccCccccccccCCHHHHHHHhc
Confidence 9999999999999998765432 211000000000001122356689999998887
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=97.77 E-value=3.4e-05 Score=73.61 Aligned_cols=74 Identities=15% Similarity=0.203 Sum_probs=52.1
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcC--------CCC---------C-Cc---ccC-c
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEAD--------LER---------N-DR---SFG-H 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~g--------l~d---------~-D~---~vg-~ 448 (525)
+.+||||| +..+|+.. +++|+|||+|+++++.+.+++++.. ... . |. .+. .
T Consensus 58 g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~~~ 137 (210)
T 1nt2_A 58 DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQK 137 (210)
T ss_dssp SCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECCCST
T ss_pred CCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEeccCh
Confidence 45999999 67778764 3799999999998877666655321 000 1 33 122 2
Q ss_pred ccHHHHHHHHHhccCCCcEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq 471 (525)
.....+++++.++|||||++++.
T Consensus 138 ~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 138 NQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp THHHHHHHHHHHHEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHhCCCCEEEEE
Confidence 23455699999999999999987
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.77 E-value=1.5e-05 Score=83.01 Aligned_cols=73 Identities=12% Similarity=0.168 Sum_probs=57.9
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC-------------------Cc-------c
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN-------------------DR-------S 445 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-------------------D~-------~ 445 (525)
.+|||+| ++.++++. +++|+|||+|+++++.|+++++..|+.+. |. |
T Consensus 224 ~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~fD~Ii~nppfh 303 (375)
T 4dcm_A 224 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPFH 303 (375)
T ss_dssp SEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTCEEEEEECCCC-
T ss_pred CeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCCeeEEEECCCcc
Confidence 4999999 78888875 79999999999999999999988765421 22 1
Q ss_pred ----cCcccHHHHHHHHHhccCCCcEEEEE
Q 043102 446 ----FGHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 446 ----vg~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
++......+++++.++|||||++++-
T Consensus 304 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv 333 (375)
T 4dcm_A 304 QQHALTDNVAWEMFHHARRCLKINGELYIV 333 (375)
T ss_dssp ------CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCcccCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 22333457899999999999999984
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=2.8e-05 Score=79.77 Aligned_cols=73 Identities=23% Similarity=0.241 Sum_probs=57.7
Q ss_pred cCCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc----cc
Q 043102 396 FKVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN------------------DR----SF 446 (525)
Q Consensus 396 f~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~----~v 446 (525)
.+..+||||| ++.+++. |+ +|+|||+|+ +++.|++++++.|+.++ |. .+
T Consensus 63 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 140 (340)
T 2fyt_A 63 FKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 140 (340)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred cCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCc
Confidence 4456999999 7777775 65 999999996 99999999988887544 22 11
Q ss_pred -----CcccHHHHHHHHHhccCCCcEEEE
Q 043102 447 -----GHEYMEEFFGCCESLIAKDGLFVL 470 (525)
Q Consensus 447 -----g~~~~~~~f~~i~r~LkpGG~~vi 470 (525)
.....+.+++++.++|||||+++.
T Consensus 141 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 169 (340)
T 2fyt_A 141 GYFLLFESMLDSVLYAKNKYLAKGGSVYP 169 (340)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred hhhccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence 134578899999999999999984
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=97.75 E-value=4e-05 Score=81.66 Aligned_cols=78 Identities=12% Similarity=0.057 Sum_probs=60.1
Q ss_pred Ceehhhc------HHHHHHhcCC-EEEEEcCChHHHHHH-------HHHHHHcCCC-CC---------------------
Q 043102 399 REVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYA-------GIKVKEADLE-RN--------------------- 442 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~A-------r~r~~~~gl~-d~--------------------- 442 (525)
.+||||| ++.+|+..|+ +|+|||+|+++++.| +++++..|+. .+
T Consensus 244 ~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~~~~ 323 (433)
T 1u2z_A 244 DTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQ 323 (433)
T ss_dssp CEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGGG
T ss_pred CEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccccCC
Confidence 4999999 7788876665 899999999999999 8888877742 11
Q ss_pred -Cc-----ccCcccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 443 -DR-----SFGHEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 443 -D~-----~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
|. .+..++.+..++++.++|||||++++.....+
T Consensus 324 FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d~f~p 363 (433)
T 1u2z_A 324 CDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRS 363 (433)
T ss_dssp CSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred CCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEeeccCC
Confidence 22 11235778889999999999999999754433
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=97.75 E-value=5.1e-05 Score=77.79 Aligned_cols=75 Identities=19% Similarity=0.283 Sum_probs=60.0
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCC-C------Cc---------------------
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLER-N------DR--------------------- 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d-~------D~--------------------- 444 (525)
.+|||+| ++.+|+. |++|+|||+|+++++.|+++++..++++ + |.
T Consensus 155 ~~VLDlgcGtG~~sl~la~~-ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dP 233 (332)
T 2igt_A 155 LKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDP 233 (332)
T ss_dssp CEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECC
T ss_pred CcEEEcccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECC
Confidence 4899999 7888875 8899999999999999999998888764 1 21
Q ss_pred -ccC----------cccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 445 -SFG----------HEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 445 -~vg----------~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
..+ .+.+..+++.+.++|||||++++....
T Consensus 234 P~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 234 PKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp CSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 011 124778999999999999998876654
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=1.4e-05 Score=80.29 Aligned_cols=78 Identities=13% Similarity=0.080 Sum_probs=62.7
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc------------ccC-cccHH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------DR------------SFG-HEYME 452 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------------~vg-~~~~~ 452 (525)
+.+|||+| ++.+|++..++|+++|+|++.++.++++++..|++++ |+ .++ ...-.
T Consensus 126 g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p~~~~ 205 (278)
T 3k6r_A 126 DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVVRTH 205 (278)
T ss_dssp TCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCSSGG
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCCCcHH
Confidence 35999999 8888886447999999999999999999999999876 43 122 22335
Q ss_pred HHHHHHHhccCCCcEEEEEEecC
Q 043102 453 EFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
.|+..+.++|||||.+.++..+.
T Consensus 206 ~~l~~a~~~lk~gG~ih~~~~~~ 228 (278)
T 3k6r_A 206 EFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp GGHHHHHHHEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHcCCCCEEEEEeeec
Confidence 67888889999999998887653
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=1.1e-05 Score=83.32 Aligned_cols=121 Identities=14% Similarity=0.148 Sum_probs=80.7
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHH----HcCCCCC----Cc--------ccCcccHHHHH
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVK----EADLERN----DR--------SFGHEYMEEFF 455 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~----~~gl~d~----D~--------~vg~~~~~~~f 455 (525)
.+||||| +..+++++ +++++++|+ +++++.|++.-. ...+.+. |. ++..+....++
T Consensus 211 ~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l 289 (372)
T 1fp1_D 211 STLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFL 289 (372)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHH
T ss_pred CEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhcCCCEEEeCCcccCCCCCCEEEEecccccCCHHHHHHHH
Confidence 4999999 77788764 789999999 999988875310 0001001 33 23333445999
Q ss_pred HHHHhccCCCcEEEEEEecCCCcchhc----ccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 456 GCCESLIAKDGLFVLQFISIPDERYNE----FRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 456 ~~i~r~LkpGG~~viq~i~~~~~~~~~----~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
+++.++|||||+++|.++..++..... .....++... .++++...+.+++.+.++++ ||+++-..
T Consensus 290 ~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~t~~e~~~ll~~a-Gf~~~~~~ 358 (372)
T 1fp1_D 290 SNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMF-ITVGGRERTEKQYEKLSKLS-GFSKFQVA 358 (372)
T ss_dssp HHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHH-HHHSCCCEEHHHHHHHHHHT-TCSEEEEE
T ss_pred HHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHH-hccCCccCCHHHHHHHHHHC-CCceEEEE
Confidence 999999999999999988776543110 0011111111 14677888999999999995 99876554
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=97.72 E-value=5e-05 Score=74.38 Aligned_cols=90 Identities=13% Similarity=0.080 Sum_probs=68.9
Q ss_pred cccccchhccccCC-Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc------
Q 043102 385 LDESLTYSCALFKV-REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN------DR------ 444 (525)
Q Consensus 385 Ld~~m~ys~a~f~~-~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------ 444 (525)
|+++++....+.+. .+||||| ++.+|+.. ..+|+++|+|++.++.|+++++..|++++ |.
T Consensus 8 Ls~RL~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~ 87 (230)
T 3lec_A 8 LSKRLQKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE 87 (230)
T ss_dssp CCHHHHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG
T ss_pred HHHHHHHHHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc
Confidence 34444333344433 3999999 88888863 34899999999999999999999999875 22
Q ss_pred ----------ccCcccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 445 ----------SFGHEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 445 ----------~vg~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
-+|-.-...++....+.|+++|++++|.+.
T Consensus 88 ~~~~D~IviaGmGg~lI~~IL~~~~~~l~~~~~lIlqp~~ 127 (230)
T 3lec_A 88 ADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQPNN 127 (230)
T ss_dssp GGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEESS
T ss_pred ccccCEEEEeCCchHHHHHHHHHHHHHhCcCCEEEEECCC
Confidence 224455788899999999999999999864
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.68 E-value=8.9e-06 Score=76.47 Aligned_cols=100 Identities=13% Similarity=0.113 Sum_probs=64.1
Q ss_pred CCeehhhc--HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC--Cc-----ccCcccHHHHHHHHHhccCCCcEE
Q 043102 398 VREVIFLG--TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN--DR-----SFGHEYMEEFFGCCESLIAKDGLF 468 (525)
Q Consensus 398 ~~rVLDIG--a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~--D~-----~vg~~~~~~~f~~i~r~LkpGG~~ 468 (525)
..+||||| .-.++...+++|+|+|+|++.+......+.+..+.+. |. .+...+...+++++.++|||||++
T Consensus 68 ~~~vLDiG~G~G~~~~~l~~~v~~~D~s~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l 147 (215)
T 2zfu_A 68 SLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLL 147 (215)
T ss_dssp TSCEEEETCTTCHHHHHCCSCEEEEESSCSSTTEEESCTTSCSCCTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEE
T ss_pred CCeEEEECCcCCHHHHHhhccEEEEeCCCCCceEEEeccccCCCCCCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEE
Confidence 35999999 2222333468999999999821111100111111111 44 122467899999999999999999
Q ss_pred EEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 469 VLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 469 viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
++.+... ..++..++.+.++++ ||++...
T Consensus 148 ~i~~~~~-----------------------~~~~~~~~~~~l~~~-Gf~~~~~ 176 (215)
T 2zfu_A 148 KVAEVSS-----------------------RFEDVRTFLRAVTKL-GFKIVSK 176 (215)
T ss_dssp EEEECGG-----------------------GCSCHHHHHHHHHHT-TEEEEEE
T ss_pred EEEEcCC-----------------------CCCCHHHHHHHHHHC-CCEEEEE
Confidence 9975421 113889999999995 9988654
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.68 E-value=7.7e-06 Score=82.82 Aligned_cols=113 Identities=11% Similarity=0.116 Sum_probs=71.4
Q ss_pred Ceehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHH------cC--------CCCC--Cc---ccCcccHH
Q 043102 399 REVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKE------AD--------LERN--DR---SFGHEYME 452 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~------~g--------l~d~--D~---~vg~~~~~ 452 (525)
.+||||| +..++++ |+ +|+|||+|++|++++.++-.. .. +... |. .+....+.
T Consensus 87 ~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~sl~ 165 (291)
T 3hp7_A 87 MITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFISLN 165 (291)
T ss_dssp CEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSCGG
T ss_pred cEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHhhHH
Confidence 3899999 6677775 65 999999999999996542111 01 1111 22 12233568
Q ss_pred HHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCC-------CHHHHHHHHHhcCCcEEEEEEec
Q 043102 453 EFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLP-------SLSRITSAMSAASRLWYNLAVST 524 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LP-------sl~~i~~~~~~a~gl~V~~~~~~ 524 (525)
..++++.|+|||||++++- ..| .|+. ....+.+ +|.+. ++.++.+.++++ ||.+.-...|
T Consensus 166 ~vL~e~~rvLkpGG~lv~l--vkP--qfe~---~~~~~~~----~G~vrd~~~~~~~~~~v~~~~~~~-Gf~v~~~~~s 232 (291)
T 3hp7_A 166 LILPALAKILVDGGQVVAL--VKP--QFEA---GREQIGK----NGIVRESSIHEKVLETVTAFAVDY-GFSVKGLDFS 232 (291)
T ss_dssp GTHHHHHHHSCTTCEEEEE--ECG--GGTS---CGGGCC-----CCCCCCHHHHHHHHHHHHHHHHHT-TEEEEEEEEC
T ss_pred HHHHHHHHHcCcCCEEEEE--ECc--cccc---ChhhcCC----CCccCCHHHHHHHHHHHHHHHHHC-CCEEEEEEEC
Confidence 8999999999999999884 222 2332 1222222 23322 556778788875 9998766543
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=1.9e-05 Score=86.59 Aligned_cols=79 Identities=16% Similarity=0.168 Sum_probs=59.4
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCC-CCC------------------Cc--------c
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADL-ERN------------------DR--------S 445 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl-~d~------------------D~--------~ 445 (525)
.|||||| +..+|+. |++|||||+|+++++.|+.++++.|. ... |. |
T Consensus 68 ~~vLDvGCG~G~~~~~la~~-ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~eh 146 (569)
T 4azs_A 68 LNVLDLGCAQGFFSLSLASK-GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFHH 146 (569)
T ss_dssp CEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHHH
T ss_pred CeEEEECCCCcHHHHHHHhC-CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcchhc
Confidence 3999999 8888985 99999999999999999999988763 111 44 4
Q ss_pred cCcccHHHHHHHHHhccCCCcEEEEEEecCCCc
Q 043102 446 FGHEYMEEFFGCCESLIAKDGLFVLQFISIPDE 478 (525)
Q Consensus 446 vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~ 478 (525)
|.....-.....+.+.|+++|..++.+|...+.
T Consensus 147 v~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e~ 179 (569)
T 4azs_A 147 IVHLHGIDEVKRLLSRLADVTQAVILELAVKEE 179 (569)
T ss_dssp HHHHHCHHHHHHHHHHHHHHSSEEEEECCCTTS
T ss_pred CCCHHHHHHHHHHHHHhccccceeeEEeccccc
Confidence 432221233456777899999999988887664
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=8.4e-05 Score=74.71 Aligned_cols=114 Identities=9% Similarity=-0.024 Sum_probs=73.5
Q ss_pred eehhhc--------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcCC----------CC-----------C--C--c
Q 043102 400 EVIFLG--------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEADL----------ER-----------N--D--R 444 (525)
Q Consensus 400 rVLDIG--------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~gl----------~d-----------~--D--~ 444 (525)
+||||| ..+++++ .+++|++||+|++|++.||+++...+. .+ . | .
T Consensus 81 q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~~~ 160 (277)
T 3giw_A 81 QFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDLTR 160 (277)
T ss_dssp EEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCTTS
T ss_pred EEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCcCC
Confidence 899999 3556554 589999999999999999999854321 11 0 2 1
Q ss_pred -----------ccCcc-cHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHh
Q 043102 445 -----------SFGHE-YMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSA 512 (525)
Q Consensus 445 -----------~vg~~-~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~ 512 (525)
++... .....++++.+.|+|||++++...+..... +......+..+.---| ..+-|.+|+.+.++
T Consensus 161 p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p-~~~~~~~~~~~~~g~p-~~~rs~~ei~~~f~- 237 (277)
T 3giw_A 161 PVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAP-QEVGRVAREYAARNMP-MRLRTHAEAEEFFE- 237 (277)
T ss_dssp CCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSH-HHHHHHHHHHHHTTCC-CCCCCHHHHHHTTT-
T ss_pred cchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCH-HHHHHHHHHHHhcCCC-CccCCHHHHHHHhC-
Confidence 23222 257899999999999999999887754321 1001111222221113 35568888887773
Q ss_pred cCCcEE
Q 043102 513 ASRLWY 518 (525)
Q Consensus 513 a~gl~V 518 (525)
||++
T Consensus 238 --Glel 241 (277)
T 3giw_A 238 --GLEL 241 (277)
T ss_dssp --TSEE
T ss_pred --CCcc
Confidence 7875
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.65 E-value=1.4e-05 Score=76.46 Aligned_cols=74 Identities=7% Similarity=0.038 Sum_probs=58.5
Q ss_pred CCeehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc-------ccCc
Q 043102 398 VREVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR-------SFGH 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~-------~vg~ 448 (525)
..+||||| |+.++.. .+++|+++|+|++|++.|+++++..|+.++ |. |.-
T Consensus 50 ~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~~~~~~~DvVLa~k~LHlL- 128 (200)
T 3fzg_A 50 VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDVYKGTYDVVFLLKMLPVL- 128 (200)
T ss_dssp CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHHTTSEEEEEEEETCHHHH-
T ss_pred CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccccCCCCCcChhhHhhHHHhh-
Confidence 34999999 7776654 478999999999999999999999998753 33 111
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
++.+..+.++.+.|||||.|+-..
T Consensus 129 ~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 129 KQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp HHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred hhhHHHHHHHHHHhCCCCEEEEeC
Confidence 444555668999999999998765
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.65 E-value=3e-05 Score=79.27 Aligned_cols=75 Identities=9% Similarity=0.135 Sum_probs=59.8
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC--------------Cc-------ccC---
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN--------------DR-------SFG--- 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~--------------D~-------~vg--- 447 (525)
.+||||| ++.+++.. +++|+|+|+|+++++.|+++++..++..+ |. |.|
T Consensus 198 ~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Iv~~~~~~~g~~~ 277 (343)
T 2pjd_A 198 GKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDMIISNPPFHDGMQT 277 (343)
T ss_dssp SBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEEEEECCCCCSSSHH
T ss_pred CeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeEEEECCCcccCccC
Confidence 4999999 77778763 47999999999999999999988776533 22 222
Q ss_pred -cccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 448 -HEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 448 -~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
......+++++.++|||||++++..-
T Consensus 278 ~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 278 SLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp HHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 23568899999999999999998654
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=6.1e-06 Score=79.27 Aligned_cols=107 Identities=8% Similarity=0.001 Sum_probs=69.6
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----C------------cccCcccHHH
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----D------------RSFGHEYMEE 453 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D------------~~vg~~~~~~ 453 (525)
+..+||||| +..+++..+++|+|+|+|+++++.|+++++..|+.+- | ..+...-...
T Consensus 91 ~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~ 170 (235)
T 1jg1_A 91 PGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPK 170 (235)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSS
T ss_pred CCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCCCccEEEECCcHHH
Confidence 344999999 7777876458999999999999999999988776432 2 1010001122
Q ss_pred HHHHHHhccCCCcEEEEEEecCCC-cchhcc-cCchhHHhhcccCCCCCCCH
Q 043102 454 FFGCCESLIAKDGLFVLQFISIPD-ERYNEF-RLSSDFMKEYIFPGGCLPSL 503 (525)
Q Consensus 454 ~f~~i~r~LkpGG~~viq~i~~~~-~~~~~~-~~~~~fi~kYIFPGg~LPsl 503 (525)
+.+++.++|||||++++....... ...... +....|..+.++|..+.|-.
T Consensus 171 ~~~~~~~~L~pgG~lvi~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~p~~ 222 (235)
T 1jg1_A 171 IPEPLIEQLKIGGKLIIPVGSYHLWQELLEVRKTKDGIKIKNHGGVAFVPLI 222 (235)
T ss_dssp CCHHHHHTEEEEEEEEEEECSSSSCEEEEEEEEETTEEEEEEEEEECCCBCB
T ss_pred HHHHHHHhcCCCcEEEEEEecCCCccEEEEEEEeCCeEEEEEeccEEEEEcc
Confidence 345889999999999996654322 111111 12345666667776666653
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=3e-05 Score=79.22 Aligned_cols=120 Identities=9% Similarity=0.072 Sum_probs=79.2
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHH----HcCC-C---CCCc--------ccCcccHHHHH
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVK----EADL-E---RNDR--------SFGHEYMEEFF 455 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~----~~gl-~---d~D~--------~vg~~~~~~~f 455 (525)
.+||||| +..+++++ +++|+++|+ +++++.|++.-. ...+ + .-|. ++.......++
T Consensus 190 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~~~l 268 (352)
T 1fp2_A 190 ESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRIL 268 (352)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHH
T ss_pred ceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccCCCcEEEeccccCCCCCccEEEeehhhccCCHHHHHHHH
Confidence 4999999 77788764 789999999 999998875310 0011 1 0144 23334445999
Q ss_pred HHHHhccCC---CcEEEEEEecCCCcchh----cccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 456 GCCESLIAK---DGLFVLQFISIPDERYN----EFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 456 ~~i~r~Lkp---GG~~viq~i~~~~~~~~----~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
+++.++||| ||+++|.+...++.... ......++.. ..+. +...+.+++.+.++++ ||+++-..
T Consensus 269 ~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~-~~~~-g~~~t~~e~~~ll~~a-Gf~~~~~~ 339 (352)
T 1fp2_A 269 KKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNM-ACLN-GKERNEEEWKKLFIEA-GFQHYKIS 339 (352)
T ss_dssp HHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHG-GGGT-CCCEEHHHHHHHHHHT-TCCEEEEE
T ss_pred HHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHH-Hhcc-CCCCCHHHHHHHHHHC-CCCeeEEE
Confidence 999999999 99999998876653210 0000111111 1133 6677999999999995 99876543
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.64 E-value=4.7e-05 Score=79.63 Aligned_cols=76 Identities=14% Similarity=0.214 Sum_probs=61.3
Q ss_pred cCCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc-------
Q 043102 396 FKVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN-----------------DR------- 444 (525)
Q Consensus 396 f~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~------- 444 (525)
|++.+||||| ++.+|+ .|+ +|+|||.|+ +++.|++.++..|++++ |.
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~-aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~ 159 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQ-AGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMG 159 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHH-TTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCB
T ss_pred cCCCEEEEeCCCccHHHHHHHH-hCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccc
Confidence 5566999999 677776 475 899999995 89999999999998876 21
Q ss_pred --ccCcccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 445 --SFGHEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 445 --~vg~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
..+...++.++....++|||||+++-+..
T Consensus 160 ~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~a 190 (376)
T 4hc4_A 160 YGLLHESMLSSVLHARTKWLKEGGLLLPASA 190 (376)
T ss_dssp TTBTTTCSHHHHHHHHHHHEEEEEEEESCEE
T ss_pred ccccccchhhhHHHHHHhhCCCCceECCccc
Confidence 12355789999999999999999875543
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.64 E-value=7.4e-05 Score=73.77 Aligned_cols=76 Identities=13% Similarity=0.122 Sum_probs=63.3
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc----------------ccCcc
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN------DR----------------SFGHE 449 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~----------------~vg~~ 449 (525)
.+||||| ++.+|+.. ..+|+++|+|+..++.|+++++..|+.++ |. -+|.+
T Consensus 23 ~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~IviagmGg~ 102 (244)
T 3gnl_A 23 ERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMGGT 102 (244)
T ss_dssp EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEECHH
T ss_pred CEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCCchH
Confidence 4999999 78888863 34899999999999999999999999775 22 22445
Q ss_pred cHHHHHHHHHhccCCCcEEEEEEec
Q 043102 450 YMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 450 ~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
-...++....+.|+++|++++|.+.
T Consensus 103 lI~~IL~~~~~~L~~~~~lIlq~~~ 127 (244)
T 3gnl_A 103 LIRTILEEGAAKLAGVTKLILQPNI 127 (244)
T ss_dssp HHHHHHHHTGGGGTTCCEEEEEESS
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 5788999999999999999999764
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.63 E-value=3.6e-05 Score=75.96 Aligned_cols=77 Identities=13% Similarity=0.029 Sum_probs=60.1
Q ss_pred CCCeehhhc------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHc-CCCCC----------------Cc-ccCccc
Q 043102 397 KVREVIFLG------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEA-DLERN----------------DR-SFGHEY 450 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~-gl~d~----------------D~-~vg~~~ 450 (525)
+..+|||+| ++.+++. .+++|+|+|+|+++++.|+++++.. |+..- |. .....+
T Consensus 110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~fD~Vi~~~~~ 189 (275)
T 1yb2_A 110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADIPD 189 (275)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEECCSC
T ss_pred CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCCccEEEEcCcC
Confidence 345999999 6777775 2789999999999999999999877 64211 22 123345
Q ss_pred HHHHHHHHHhccCCCcEEEEEEe
Q 043102 451 MEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~i 473 (525)
...+++++.++|||||++++.+.
T Consensus 190 ~~~~l~~~~~~LkpgG~l~i~~~ 212 (275)
T 1yb2_A 190 PWNHVQKIASMMKPGSVATFYLP 212 (275)
T ss_dssp GGGSHHHHHHTEEEEEEEEEEES
T ss_pred HHHHHHHHHHHcCCCCEEEEEeC
Confidence 67899999999999999998764
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.62 E-value=7.3e-05 Score=78.51 Aligned_cols=77 Identities=12% Similarity=0.135 Sum_probs=61.7
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----Cc-------------------ccC-
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN----DR-------------------SFG- 447 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----D~-------------------~vg- 447 (525)
..+|||+| ++.+|+. |++|+|+|+|+++++.|+++++..|+.++ |. ...
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~-ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~ 293 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARK-GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVK 293 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCS
T ss_pred CCeEEEcccchhHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCC
Confidence 45999999 8888875 89999999999999999999998887643 22 111
Q ss_pred --------cccHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 448 --------HEYMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 448 --------~~~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
.+.+..+++.+.++|||||++++.+.+.
T Consensus 294 ~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~ 329 (393)
T 4dmg_A 294 RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY 329 (393)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 2356789999999999999998765543
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.62 E-value=4.5e-05 Score=75.09 Aligned_cols=77 Identities=14% Similarity=0.076 Sum_probs=60.7
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC------C-----------c-ccCccc
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN------D-----------R-SFGHEY 450 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D-----------~-~vg~~~ 450 (525)
+..+|||+| ++.+++.. +++|+++|+|+++++.|+++++..++.++ | . .....+
T Consensus 112 ~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~V~~~~~~ 191 (277)
T 1o54_A 112 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVPD 191 (277)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEECCSC
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCccCEEEECCcC
Confidence 345999999 67778763 68999999999999999999988776332 2 2 123345
Q ss_pred HHHHHHHHHhccCCCcEEEEEEe
Q 043102 451 MEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~i 473 (525)
...+++++.++|||||++++...
T Consensus 192 ~~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 192 PWNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp GGGTHHHHHHHEEEEEEEEEEES
T ss_pred HHHHHHHHHHHcCCCCEEEEEeC
Confidence 56899999999999999998653
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.62 E-value=3.7e-05 Score=71.40 Aligned_cols=77 Identities=12% Similarity=0.174 Sum_probs=57.3
Q ss_pred CCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHc-CC------------CCC--Cc--------ccC
Q 043102 398 VREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEA-DL------------ERN--DR--------SFG 447 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~-gl------------~d~--D~--------~vg 447 (525)
..+||||| +..+++. |. +|+|+|+|+++++.|+++++.. .+ .+. |. ++.
T Consensus 43 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~ 121 (215)
T 2pxx_A 43 EDRILVLGCGNSALSYELFLG-GFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALL 121 (215)
T ss_dssp TCCEEEETCTTCSHHHHHHHT-TCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHHHT
T ss_pred CCeEEEECCCCcHHHHHHHHc-CCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhhhc
Confidence 34999999 6777775 55 9999999999999999987531 11 000 22 111
Q ss_pred -------------cccHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 448 -------------HEYMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 448 -------------~~~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
..+...+++++.++|||||++++.+...
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 122 AGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp TTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 2356899999999999999999987654
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=97.59 E-value=5.8e-05 Score=76.86 Aligned_cols=75 Identities=17% Similarity=0.259 Sum_probs=58.8
Q ss_pred cCCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc----cc
Q 043102 396 FKVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN------------------DR----SF 446 (525)
Q Consensus 396 f~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~----~v 446 (525)
.+..+||||| ++.+++. |+ +|+|||+| ++++.|++++++.|+.++ |. .+
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM 114 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred cCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence 3455999999 7777775 65 99999999 699999999998887654 11 11
Q ss_pred -----CcccHHHHHHHHHhccCCCcEEEEEE
Q 043102 447 -----GHEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 447 -----g~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.....+.+++++.++|||||+++.+.
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~LkpgG~li~~~ 145 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLVEGGLIFPDK 145 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred hhhcccHHHHHHHHHHHHhhcCCCeEEEEee
Confidence 23457899999999999999998543
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=97.58 E-value=4e-05 Score=78.79 Aligned_cols=74 Identities=15% Similarity=0.213 Sum_probs=56.3
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHc--CCCC-C--------------------Cc----
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEA--DLER-N--------------------DR---- 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~--gl~d-~--------------------D~---- 444 (525)
.+||||| ++.++++. +++|++||+|+++++.|+++++.. |+.+ + |.
T Consensus 122 ~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~d 201 (334)
T 1xj5_A 122 KKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVD 201 (334)
T ss_dssp CEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEEC
T ss_pred CEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEEC
Confidence 4999999 77788764 579999999999999999987642 3321 1 22
Q ss_pred ---ccCccc---HHHHHHHHHhccCCCcEEEEEE
Q 043102 445 ---SFGHEY---MEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 445 ---~vg~~~---~~~~f~~i~r~LkpGG~~viq~ 472 (525)
..+... ...+++.+.++|||||+++++.
T Consensus 202 ~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 202 SSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp CCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 112111 5799999999999999999984
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=4.2e-05 Score=77.46 Aligned_cols=76 Identities=18% Similarity=0.279 Sum_probs=55.9
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHH--cCCC-CC------Cc------------------
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKE--ADLE-RN------DR------------------ 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~--~gl~-d~------D~------------------ 444 (525)
.+||||| +++++++. ..+|++||+|+++++.|++++.. .++. .+ |+
T Consensus 97 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d~ 176 (304)
T 2o07_A 97 RKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDS 176 (304)
T ss_dssp CEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEEC
T ss_pred CEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEECC
Confidence 4999999 77777763 47999999999999999999765 3442 22 21
Q ss_pred --ccCc---ccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 445 --SFGH---EYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 445 --~vg~---~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
+.+. -...++++.+.++|||||+++++...
T Consensus 177 ~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 177 SDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp C-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 1111 13468999999999999999998754
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00012 Score=73.09 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=57.2
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc------cc---C----------
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------DR------SF---G---------- 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------~v---g---------- 447 (525)
.+||||| ++.+++..+++|+|+|+|+++++.|+++++..|+.++ |. .+ .
T Consensus 125 ~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPPyi~ 204 (284)
T 1nv8_A 125 KTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVK 204 (284)
T ss_dssp CEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCBC
T ss_pred CEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCCCCC
Confidence 4899999 6777765578999999999999999999999888754 32 11 0
Q ss_pred c----------c---------cHHHHHHHHH-hccCCCcEEEEE
Q 043102 448 H----------E---------YMEEFFGCCE-SLIAKDGLFVLQ 471 (525)
Q Consensus 448 ~----------~---------~~~~~f~~i~-r~LkpGG~~viq 471 (525)
. + +-..+++++. +.|||||++++.
T Consensus 205 ~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 205 SSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp GGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred cccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 0 0 0017899999 999999999983
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.54 E-value=5.4e-05 Score=75.04 Aligned_cols=79 Identities=14% Similarity=0.066 Sum_probs=63.1
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----Cc------------cc-CcccHH
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN-----DR------------SF-GHEYME 452 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D~------------~v-g~~~~~ 452 (525)
+.+|||+| ++.+|++. +++|+|||+|+++++.|+++++..|+.+. |. .+ ......
T Consensus 120 ~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~~~~ 199 (272)
T 3a27_A 120 NEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVHKTH 199 (272)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCSSGG
T ss_pred CCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcccHH
Confidence 35999999 88888863 56999999999999999999998877532 22 11 123677
Q ss_pred HHHHHHHhccCCCcEEEEEEecCC
Q 043102 453 EFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
.+++++.++|||||++++.+....
T Consensus 200 ~~l~~~~~~LkpgG~l~~s~~~~~ 223 (272)
T 3a27_A 200 KFLDKTFEFLKDRGVIHYHETVAE 223 (272)
T ss_dssp GGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred HHHHHHHHHcCCCCEEEEEEcCcc
Confidence 899999999999999999877543
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=6.4e-05 Score=74.05 Aligned_cols=74 Identities=8% Similarity=0.196 Sum_probs=58.0
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cccc------C-
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN----------------DRSF------G- 447 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~~v------g- 447 (525)
..+||||| ++.+++.. +++|+|+|+|+++++.|+++++..|+..- |..+ +
T Consensus 110 ~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~~~ 189 (276)
T 2b3t_A 110 PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYIDE 189 (276)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCBCT
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCCCc
Confidence 34999999 77777654 68999999999999999999988776421 1100 0
Q ss_pred ------------------------cccHHHHHHHHHhccCCCcEEEEE
Q 043102 448 ------------------------HEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 448 ------------------------~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
...+..+++.+.++|||||++++.
T Consensus 190 ~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~ 237 (276)
T 2b3t_A 190 QDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 237 (276)
T ss_dssp TCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred cccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 135688999999999999999985
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.54 E-value=7.9e-05 Score=76.26 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=57.0
Q ss_pred eehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC--------------------Cc-------c
Q 043102 400 EVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN--------------------DR-------S 445 (525)
Q Consensus 400 rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~--------------------D~-------~ 445 (525)
+||||| +.+++++ .+++|++||+|+++++.|++++.... ..+ |. +
T Consensus 92 rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 92 RITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp EEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred EEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 899999 7788874 48899999999999999999874311 111 22 1
Q ss_pred cCc-cc--HHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 446 FGH-EY--MEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 446 vg~-~~--~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
.+. .. ..+||+.++++|||||+++++.....
T Consensus 171 ~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~ 204 (317)
T 3gjy_A 171 AITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHS 204 (317)
T ss_dssp SCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECT
T ss_pred cccchhhhHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence 111 11 27899999999999999999987543
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=3.2e-05 Score=73.27 Aligned_cols=105 Identities=12% Similarity=0.103 Sum_probs=66.5
Q ss_pred CCeehhhc------HHHHHHhcC--CEEEEEcCChHHHHHHHHHHHHcCC----CCC------C------------c-cc
Q 043102 398 VREVIFLG------TIEVVKRTG--CKYTGITLAEKQLKYAGIKVKEADL----ERN------D------------R-SF 446 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G--~~VtGIdlS~eql~~Ar~r~~~~gl----~d~------D------------~-~v 446 (525)
..+||||| +..+++..| ++|+|+|+|+++++.|+++++..|+ .++ | . .+
T Consensus 78 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~ 157 (226)
T 1i1n_A 78 GAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHV 157 (226)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEEEE
Confidence 35999999 677777644 7999999999999999999887553 111 2 2 11
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEecCCC-cchhccc--CchhHHhhcccCCCCCCCH
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFISIPD-ERYNEFR--LSSDFMKEYIFPGGCLPSL 503 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~-~~~~~~~--~~~~fi~kYIFPGg~LPsl 503 (525)
. .....+++++.++|||||++++...+... ....... ....|..+.+++..+.|-.
T Consensus 158 ~-~~~~~~~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~ 216 (226)
T 1i1n_A 158 G-AAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLT 216 (226)
T ss_dssp C-SBBSSCCHHHHHTEEEEEEEEEEESCTTSCEEEEEEEECTTSCEEEEEEEEECCCBCC
T ss_pred C-CchHHHHHHHHHhcCCCcEEEEEEecCCCceEEEEEEEcCCCcEEEEEcCceEEEecc
Confidence 1 11234567899999999999996544322 1111111 1223444555655555544
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=97.54 E-value=4.6e-05 Score=77.64 Aligned_cols=74 Identities=20% Similarity=0.275 Sum_probs=53.2
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHc--CC-CCC------Cc------------------
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEA--DL-ERN------DR------------------ 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~--gl-~d~------D~------------------ 444 (525)
.+||||| ++.+++.. +.+|++||+|+++++.|+++++.. ++ ..+ |+
T Consensus 110 ~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d~ 189 (314)
T 2b2c_A 110 KRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDS 189 (314)
T ss_dssp CEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECC
T ss_pred CEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEcC
Confidence 4999999 67777753 579999999999999999998653 33 122 22
Q ss_pred --ccCc-cc-H-HHHHHHHHhccCCCcEEEEEE
Q 043102 445 --SFGH-EY-M-EEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 445 --~vg~-~~-~-~~~f~~i~r~LkpGG~~viq~ 472 (525)
+++. .. + ..+++.+.++|||||+++++.
T Consensus 190 ~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 190 SDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp C-------------HHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 1111 11 2 799999999999999999986
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00024 Score=80.87 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=56.8
Q ss_pred CCeehhhc------HHHHHHhcC--CEEEEEcCChHHHHHHHHHHHHc------CCCC---------------C--Cc--
Q 043102 398 VREVIFLG------TIEVVKRTG--CKYTGITLAEKQLKYAGIKVKEA------DLER---------------N--DR-- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G--~~VtGIdlS~eql~~Ar~r~~~~------gl~d---------------~--D~-- 444 (525)
..+||||| ++.+++..+ ++|+|||+|++|++.|+++++.. ++.. . |.
T Consensus 722 g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlVV 801 (950)
T 3htx_A 722 ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGT 801 (950)
T ss_dssp CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEEE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEEE
Confidence 44999999 777777532 79999999999999999987642 2210 0 33
Q ss_pred ------ccCcccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 445 ------SFGHEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 445 ------~vg~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
|+.......+++++.++|||| .+++.+..
T Consensus 802 ~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 802 CLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 455555668999999999999 77776653
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=97.53 E-value=1.5e-05 Score=75.70 Aligned_cols=78 Identities=17% Similarity=0.161 Sum_probs=53.8
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcC-CC-------C-----C--CcccCcccHHHHH
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEAD-LE-------R-----N--DRSFGHEYMEEFF 455 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~g-l~-------d-----~--D~~vg~~~~~~~f 455 (525)
+..+||||| +..+++. +++|+|+|+|+++++.|+++++..+ +. + . |..+...-...+.
T Consensus 70 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~ 148 (231)
T 1vbf_A 70 KGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPTLL 148 (231)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBSSCC
T ss_pred CCCEEEEEcCCCCHHHHHHHHH-cCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECCcHHHHH
Confidence 345999999 6777775 6999999999999999999986543 10 0 0 2201000011223
Q ss_pred HHHHhccCCCcEEEEEEecC
Q 043102 456 GCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 456 ~~i~r~LkpGG~~viq~i~~ 475 (525)
+++.++|||||++++.....
T Consensus 149 ~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 149 CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp HHHHHTEEEEEEEEEEECSS
T ss_pred HHHHHHcCCCcEEEEEEcCC
Confidence 57999999999999976543
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=6.1e-05 Score=76.44 Aligned_cols=76 Identities=18% Similarity=0.270 Sum_probs=57.0
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHH--cC-CC-CC-------------------Cc----
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKE--AD-LE-RN-------------------DR---- 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~--~g-l~-d~-------------------D~---- 444 (525)
.+||||| +.+++++. +.+|++||+|+++++.|++++.+ .+ ++ .+ |.
T Consensus 79 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d 158 (314)
T 1uir_A 79 KRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIID 158 (314)
T ss_dssp CEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEE
T ss_pred CeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEEC
Confidence 4999999 77777753 57999999999999999998764 23 21 11 22
Q ss_pred ---cc---Cc-c--cHHHHHHHHHhccCCCcEEEEEEec
Q 043102 445 ---SF---GH-E--YMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 445 ---~v---g~-~--~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
+. +. . ...++++.+.++|||||+++++...
T Consensus 159 ~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 197 (314)
T 1uir_A 159 LTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (314)
T ss_dssp CCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred CCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccC
Confidence 22 21 1 1479999999999999999998643
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.51 E-value=6.3e-05 Score=73.91 Aligned_cols=74 Identities=15% Similarity=0.219 Sum_probs=57.5
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHH---cCCCCC------Cc-----------------
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKE---ADLERN------DR----------------- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~---~gl~d~------D~----------------- 444 (525)
..+||||| ++.++++. +++|+|||+|+++++.|+++++. .+++++ |.
T Consensus 37 ~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~f 116 (260)
T 2ozv_A 37 ACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHF 116 (260)
T ss_dssp CEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTCE
T ss_pred CCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCCc
Confidence 34999999 77788774 68999999999999999999877 665432 11
Q ss_pred --cc------------------------CcccHHHHHHHHHhccCCCcEEEEE
Q 043102 445 --SF------------------------GHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 445 --~v------------------------g~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
.+ +...+..+++.+.++|||||++++-
T Consensus 117 D~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 169 (260)
T 2ozv_A 117 HHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI 169 (260)
T ss_dssp EEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred CEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 00 0123778999999999999999873
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.51 E-value=4.2e-05 Score=70.86 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=21.3
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCC
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADL 439 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl 439 (525)
.+|||+| ++.+++.. +++|+|+|+|+++++.|+++++..++
T Consensus 32 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~ 79 (215)
T 4dzr_A 32 TRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA 79 (215)
T ss_dssp EEEEEEESSBCHHHHHHHHHCTTEEEEEEECC----------------
T ss_pred CEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC
Confidence 4999999 77778764 67999999999999999999876654
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.50 E-value=5.9e-05 Score=72.55 Aligned_cols=76 Identities=12% Similarity=0.037 Sum_probs=58.4
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHc-CCCCC-----Cc-------------ccCcc
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEA-DLERN-----DR-------------SFGHE 449 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~-gl~d~-----D~-------------~vg~~ 449 (525)
+..+|||+| +..+++.. +++|+++|+|+++++.|+++++.. |...- |. .+...
T Consensus 96 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~~~ 175 (258)
T 2pwy_A 96 PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALDLM 175 (258)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEESS
T ss_pred CCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEECCc
Confidence 345999999 67777763 689999999999999999998876 62211 22 11233
Q ss_pred cHHHHHHHHHhccCCCcEEEEEE
Q 043102 450 YMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 450 ~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
+...+++++.++|||||++++..
T Consensus 176 ~~~~~l~~~~~~L~~gG~l~~~~ 198 (258)
T 2pwy_A 176 EPWKVLEKAALALKPDRFLVAYL 198 (258)
T ss_dssp CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred CHHHHHHHHHHhCCCCCEEEEEe
Confidence 45689999999999999999865
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=97.50 E-value=7.1e-05 Score=71.62 Aligned_cols=74 Identities=14% Similarity=0.160 Sum_probs=55.4
Q ss_pred CCeehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHHHHHcC--------CCC----C------Cc---ccC-c
Q 043102 398 VREVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIKVKEAD--------LER----N------DR---SFG-H 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r~~~~g--------l~d----~------D~---~vg-~ 448 (525)
..+||||| +..+|+..| .+|+|||+|+++++.|+++++... ..+ . |. ++. .
T Consensus 75 ~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~ 154 (230)
T 1fbn_A 75 DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQP 154 (230)
T ss_dssp TCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEECCCST
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEEecCCh
Confidence 45999999 778888755 799999999999999999875421 111 0 22 222 2
Q ss_pred ccHHHHHHHHHhccCCCcEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq 471 (525)
.....+++++.++|||||++++.
T Consensus 155 ~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 155 NQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp THHHHHHHHHHHHEEEEEEEEEE
T ss_pred hHHHHHHHHHHHhCCCCcEEEEE
Confidence 23478899999999999999996
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0003 Score=72.48 Aligned_cols=173 Identities=12% Similarity=0.072 Sum_probs=87.1
Q ss_pred HHhccceeeeccEEEEEecCCCceeeCccCCcccEE-EEeCCCceEeCCEEEEecChHHHHHhhcCCC----CHHHHhhc
Q 043102 79 ESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCT-VVCGDGSREFYNSCVMALHAPDALKILGNQA----TFDETRTG 153 (525)
Q Consensus 79 ~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~-v~~~~g~~e~fD~VV~A~hadqAL~lL~~~~----t~~E~~iL 153 (525)
++.|+++.++..+.++..+++ ++. |++. |++..+|.||+|+++..+.+||.+.+ ..+.++-|
T Consensus 207 ~~~G~~i~~~~~V~~i~~~~~------------~~~gv~~~-g~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~ 273 (425)
T 3ka7_A 207 SANGGKIHTGQEVSKILIENG------------KAAGIIAD-DRIHDADLVISNLGHAATAVLCSEALSKEADAAYFKMV 273 (425)
T ss_dssp HHTTCEEECSCCEEEEEEETT------------EEEEEEET-TEEEECSEEEECSCHHHHHHHTTTTCCTTTTHHHHHHH
T ss_pred HHcCCEEEECCceeEEEEECC------------EEEEEEEC-CEEEECCEEEECCCHHHHHHhcCCcccccCCHHHHHHh
Confidence 334677777777766655321 233 4443 66788999999999999999997432 34444555
Q ss_pred cCCc-----eeEeccCCCCCCCCCC----Cccccc-cccC--CCCCCCCCCCCCeE---EEcC-----------------
Q 043102 154 GAFH-----DIFLHCDKNSMPQNPA----AWSAWS-FLGS--LDSKNLGETSLPYL---VTLN----------------- 201 (525)
Q Consensus 154 g~f~-----~~vlHtD~s~mP~~~~----aWaswN-y~~~--~~~~nl~~~~~~~f---vTLN----------------- 201 (525)
..++ .+.+--|....+.... .+...+ +... .++ .+.+.+++++ +...
T Consensus 274 ~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~p-~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 352 (425)
T 3ka7_A 274 GTLQPSAGIKICLAADEPLVGHTGVLLTPYTRRINGVNEVTQADP-ELAPPGKHLTMCHQYVAPENVKNLESEIEMGLED 352 (425)
T ss_dssp HHCCCBEEEEEEEEESSCSSCSSSEEECCSSSSEEEEECGGGTCG-GGSCTTCEEEEEEEEECGGGGGGHHHHHHHHHHH
T ss_pred hCcCCCceEEEEeecCCCccCcCEEEECCChhhcceEEeccCCCC-CcCCCCCeEEEEEeccccccccchHHHHHHHHHH
Confidence 5555 3333334432211100 000000 0000 011 1111122322 1111
Q ss_pred -----CCCCCcc-eeeEEEecCCCCCHHHHHHHHHhhhhcCCCCeEEeccCCCC--C-CchhhhchHHHHHhhhcC
Q 043102 202 -----PDHAPEH-TLLKWSTGPPVPFVAASKASLELGHIQGRRGIWFRGAYQGY--G-FHEDGLKDLSINSCMTYG 268 (525)
Q Consensus 202 -----p~~~p~~-il~~~~y~HPv~~~~a~~aq~~l~~iqG~~~~~fcGay~g~--G-fHEdg~~Sgl~aA~~llG 268 (525)
|...++. .+.+|...-|++.+... ......-+-.|+|+||+|+.- | --|+++.||++||++|+|
T Consensus 353 l~~~~p~~~~~~~~v~~~~~~~P~~~~~~~---~~~~~~~p~~gL~laG~~~~~~gg~gv~~~~~s~~~~~~~i~~ 425 (425)
T 3ka7_A 353 LKEIFPGKRYEVLLIQSYHDEWPVNRAASG---TDPGNETPFSGLYVVGDGAKGKGGIEVEGVALGVMSVMEKVLG 425 (425)
T ss_dssp HHHHSTTCCEEEEEEEEEBTTBCSBSSCTT---CCCCSBCSSBTEEECSTTSCCTTCCHHHHHHHHHHHHHHC---
T ss_pred HHHhCCCCceEEEEEEEECCCccccccccC---CCCCCCCCcCCeEEeCCccCCCCCCccHHHHHHHHHHHHHhhC
Confidence 1101111 22355555577665510 011111123589999999854 3 489999999999999976
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=3.3e-05 Score=75.00 Aligned_cols=76 Identities=12% Similarity=0.179 Sum_probs=54.7
Q ss_pred CCeehhhc------HHHHHHh-----cCCEEEEEcCChHHHHHHHHHHHH-----c-CCC--------C-C-Cc---ccC
Q 043102 398 VREVIFLG------TIEVVKR-----TGCKYTGITLAEKQLKYAGIKVKE-----A-DLE--------R-N-DR---SFG 447 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~-----~G~~VtGIdlS~eql~~Ar~r~~~-----~-gl~--------d-~-D~---~vg 447 (525)
..+||||| ++.+|+. .+++|+|||+|+++++.|+..... . ..+ + . |. ..+
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~ 161 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA 161 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECCc
Confidence 35999999 6777775 379999999999999988732100 0 001 1 1 33 113
Q ss_pred cccHHHHHHHHHh-ccCCCcEEEEEEe
Q 043102 448 HEYMEEFFGCCES-LIAKDGLFVLQFI 473 (525)
Q Consensus 448 ~~~~~~~f~~i~r-~LkpGG~~viq~i 473 (525)
+.+++.+++++.+ +|||||+++++.+
T Consensus 162 ~~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 162 HANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp CSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred hHhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 4578999999997 9999999999765
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00092 Score=69.19 Aligned_cols=170 Identities=9% Similarity=0.045 Sum_probs=85.3
Q ss_pred HHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCceEeCCEEEEecChHHHHHhhcC-CCCHHHHhhccCCc
Q 043102 79 ESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGSREFYNSCVMALHAPDALKILGN-QATFDETRTGGAFH 157 (525)
Q Consensus 79 ~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~~e~fD~VV~A~hadqAL~lL~~-~~t~~E~~iLg~f~ 157 (525)
+..|+++.++..+.++..+ + .++ |. .+|++..+|.||+|+++.++.+||+. ....+-.+.|..++
T Consensus 200 ~~~G~~i~~~~~V~~i~~~----------~--~~v-V~-~~g~~~~ad~Vv~a~~~~~~~~ll~~~~~~~~~~~~~~~~~ 265 (421)
T 3nrn_A 200 MENKGKILTRKEVVEINIE----------E--KKV-YT-RDNEEYSFDVAISNVGVRETVKLIGRDYFDRDYLKQVDSIE 265 (421)
T ss_dssp HTTTCEEESSCCEEEEETT----------T--TEE-EE-TTCCEEECSEEEECSCHHHHHHHHCGGGSCHHHHHHHHTCC
T ss_pred HHCCCEEEcCCeEEEEEEE----------C--CEE-EE-eCCcEEEeCEEEECCCHHHHHHhcCcccCCHHHHHHHhCCC
Confidence 3346777766666666432 1 145 54 56677889999999999999999973 23334444555555
Q ss_pred -----eeEeccCCCCCCC-------CCCCccccccccCCCCCCCCCCCCCeE-EE-cCCCCC----------------Cc
Q 043102 158 -----DIFLHCDKNSMPQ-------NPAAWSAWSFLGSLDSKNLGETSLPYL-VT-LNPDHA----------------PE 207 (525)
Q Consensus 158 -----~~vlHtD~s~mP~-------~~~aWaswNy~~~~~~~nl~~~~~~~f-vT-LNp~~~----------------p~ 207 (525)
.+.+--|....+. +.. .....+....++ ++.+.++.++ +. .-|... |.
T Consensus 266 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~-~~~i~~~s~~~p-~~ap~G~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~ 343 (421)
T 3nrn_A 266 PSEGIKFNLAVPGEPRIGNTIVFTPGLM-INGFNEPSALDK-SLAREGYTLIMAHMALKNGNVKKAIEKGWEELLEIFPE 343 (421)
T ss_dssp CCCEEEEEEEEESSCSSCSSEEECTTSS-SCEEECGGGTCG-GGSCTTEEEEEEEEECTTCCHHHHHHHHHHHHHHHCTT
T ss_pred CCceEEEEEEEcCCcccCCeEEEcCCcc-eeeEeccCCCCC-CcCCCCceEEEEEEeeccccHHHHHHHHHHHHHHHcCC
Confidence 3444444432221 111 000000000011 1111112211 11 111111 11
Q ss_pred -ce--eeEEEecCCCCCHHHHHHHHHhhhhcCCCCeEEeccCCCCC-Cc--hhhhchHHHHHhhhcCCc
Q 043102 208 -HT--LLKWSTGPPVPFVAASKASLELGHIQGRRGIWFRGAYQGYG-FH--EDGLKDLSINSCMTYGEE 270 (525)
Q Consensus 208 -~i--l~~~~y~HPv~~~~a~~aq~~l~~iqG~~~~~fcGay~g~G-fH--Edg~~Sgl~aA~~llG~~ 270 (525)
.+ +.+|.-.-|++..... ..+. ... .++|+||+|+.-+ .- |.++.||.+||+.| |..
T Consensus 344 ~~~~~~~~~~~~~p~~~~~~~---~~~~-~~~-~gl~laGd~~~~~~g~~~~ga~~sg~~aA~~l-~~~ 406 (421)
T 3nrn_A 344 GEPLLAQVYRDGNPVNRTRAG---LHIE-WPL-NEVLVVGDGYRPPGGIEVDGIALGVMKALEKL-NLG 406 (421)
T ss_dssp CEEEEEEEC----------------CCC-CCC-SSEEECSTTCCCTTCCHHHHHHHHHHHHHHHT-TSC
T ss_pred CeEEEeeeccCCCCcccccCC---CCCC-CCC-CcEEEECCcccCCCceeeehHHHHHHHHHHHh-CcC
Confidence 11 2344334455422210 1244 444 8999999998766 56 99999999999999 776
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00014 Score=73.68 Aligned_cols=79 Identities=11% Similarity=0.114 Sum_probs=60.5
Q ss_pred CCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc--------
Q 043102 398 VREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR-------- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~-------- 444 (525)
..+|||+| +..+|+.. +++|+|+|+|+++++.|+++++..|+..- |.
T Consensus 119 g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~Pcs 198 (315)
T 1ixk_A 119 GEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCT 198 (315)
T ss_dssp TCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCTT
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeCCCC
Confidence 35999999 77888763 48999999999999999999988877421 22
Q ss_pred ccCc----c----------------cHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 445 SFGH----E----------------YMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 445 ~vg~----~----------------~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
..|. + ....+++++.++|||||++++.+.+..
T Consensus 199 g~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~ 250 (315)
T 1ixk_A 199 GSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE 250 (315)
T ss_dssp STTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred CcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence 1120 0 125889999999999999999776553
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.46 E-value=7.3e-05 Score=73.14 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=59.4
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHc-C-CCCC------C------------c-ccC
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEA-D-LERN------D------------R-SFG 447 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~-g-l~d~------D------------~-~vg 447 (525)
+..+||||| +..+++.. +.+|+++|+|+++++.|+++++.. | +.++ | . .+.
T Consensus 99 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~~ 178 (280)
T 1i9g_A 99 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLD 178 (280)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEEE
T ss_pred CCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEEC
Confidence 345999999 67777753 689999999999999999998876 4 3222 2 2 112
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
..+...+++++.++|||||++++.+.+
T Consensus 179 ~~~~~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 179 MLAPWEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp SSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred CcCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 234558999999999999999997654
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=97.46 E-value=7.5e-05 Score=74.35 Aligned_cols=75 Identities=23% Similarity=0.396 Sum_probs=56.1
Q ss_pred Ceehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHHHHHc--CCCC-C------Cc------------------
Q 043102 399 REVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIKVKEA--DLER-N------DR------------------ 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r~~~~--gl~d-~------D~------------------ 444 (525)
.+||||| +++++++.+ .+|++||+|+++++.|++++... ++.+ + |+
T Consensus 77 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d~ 156 (275)
T 1iy9_A 77 EHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDS 156 (275)
T ss_dssp CEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEESC
T ss_pred CEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEECC
Confidence 4999999 677777644 79999999999999999987542 3422 2 32
Q ss_pred --ccCcc---cHHHHHHHHHhccCCCcEEEEEEe
Q 043102 445 --SFGHE---YMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 445 --~vg~~---~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
+.+.. .-.++++.+.++|||||+++++..
T Consensus 157 ~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 157 TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (275)
T ss_dssp SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred CCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 11110 136899999999999999999854
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00098 Score=71.21 Aligned_cols=79 Identities=9% Similarity=-0.025 Sum_probs=54.1
Q ss_pred HHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCceEeCCEEEEecChHHHHHhhcC-CCCHHHHhhccCCc
Q 043102 79 ESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGSREFYNSCVMALHAPDALKILGN-QATFDETRTGGAFH 157 (525)
Q Consensus 79 ~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~~e~fD~VV~A~hadqAL~lL~~-~~t~~E~~iLg~f~ 157 (525)
+.+|+++.++..+.++..+ . .+|.|.+.+|++..+|+||+|+++.++.+|+.+ ......++.+..+.
T Consensus 223 ~~lg~~i~~~~~V~~i~~~--------~----~~v~v~~~~g~~~~ad~VI~a~p~~~l~~l~~~p~lp~~~~~~i~~~~ 290 (520)
T 1s3e_A 223 DLLGDRVKLERPVIYIDQT--------R----ENVLVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVP 290 (520)
T ss_dssp HHHGGGEESSCCEEEEECS--------S----SSEEEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCC
T ss_pred HHcCCcEEcCCeeEEEEEC--------C----CeEEEEECCCeEEEeCEEEECCCHHHHcceeeCCCCCHHHHHHHHhCC
Confidence 3446777666666666331 1 257888888888899999999999998888742 12344456677766
Q ss_pred -----eeEeccCCCCCC
Q 043102 158 -----DIFLHCDKNSMP 169 (525)
Q Consensus 158 -----~~vlHtD~s~mP 169 (525)
.+++.-|..+.+
T Consensus 291 ~~~~~kv~l~~~~~~w~ 307 (520)
T 1s3e_A 291 LGSVIKCIVYYKEPFWR 307 (520)
T ss_dssp BCCEEEEEEECSSCGGG
T ss_pred CcceEEEEEEeCCCccc
Confidence 577776765543
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00016 Score=69.15 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=53.8
Q ss_pred CCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHc-CC-------CC---------C-Cc---cc-C
Q 043102 398 VREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEA-DL-------ER---------N-DR---SF-G 447 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~-gl-------~d---------~-D~---~v-g 447 (525)
..+||||| +..++++. +++|+|||+|++|++.+.++++.. ++ .+ . |. ++ .
T Consensus 78 ~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~~ 157 (233)
T 2ipx_A 78 GAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQ 157 (233)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECCCC
T ss_pred CCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcCCC
Confidence 45999999 77888774 489999999999888888777652 11 11 0 22 11 2
Q ss_pred cccHHHHHHHHHhccCCCcEEEEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
......+++++.++|||||++++.
T Consensus 158 ~~~~~~~~~~~~~~LkpgG~l~i~ 181 (233)
T 2ipx_A 158 PDQTRIVALNAHTFLRNGGHFVIS 181 (233)
T ss_dssp TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccHHHHHHHHHHHHcCCCeEEEEE
Confidence 333466789999999999999994
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=7.2e-05 Score=76.31 Aligned_cols=76 Identities=21% Similarity=0.271 Sum_probs=56.8
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHH--cCCCC-C------C-------------c-----
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKE--ADLER-N------D-------------R----- 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~--~gl~d-~------D-------------~----- 444 (525)
.+||||| +++++++. +.+|+++|+|+++++.|+++++. .++++ + | .
T Consensus 118 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d~ 197 (321)
T 2pt6_A 118 KNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDS 197 (321)
T ss_dssp CEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEEC
T ss_pred CEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEECC
Confidence 4999999 77777753 58999999999999999998765 23311 1 2 2
Q ss_pred --ccCc-cc-H-HHHHHHHHhccCCCcEEEEEEec
Q 043102 445 --SFGH-EY-M-EEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 445 --~vg~-~~-~-~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
+++. .. + .++++.+.++|||||+++++...
T Consensus 198 ~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 232 (321)
T 2pt6_A 198 SDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 232 (321)
T ss_dssp CCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 1121 11 2 79999999999999999998643
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=6.7e-05 Score=75.50 Aligned_cols=75 Identities=21% Similarity=0.361 Sum_probs=55.4
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHH--cCCCC-C------C-------------c-----
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKE--ADLER-N------D-------------R----- 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~--~gl~d-~------D-------------~----- 444 (525)
.+||||| ++.++++. ..+|++||+|+++++.|+++++. .++.+ + | .
T Consensus 92 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~ 171 (296)
T 1inl_A 92 KKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDS 171 (296)
T ss_dssp CEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC
T ss_pred CEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEcC
Confidence 4999999 77777764 47999999999999999998754 23311 1 2 2
Q ss_pred --c-cCcc---cHHHHHHHHHhccCCCcEEEEEEe
Q 043102 445 --S-FGHE---YMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 445 --~-vg~~---~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
+ ++.. ...++++.+.++|||||+++++..
T Consensus 172 ~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 172 TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp ----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred CCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 1 2110 237899999999999999999854
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00021 Score=70.72 Aligned_cols=78 Identities=13% Similarity=0.113 Sum_probs=60.5
Q ss_pred CCeehhhc------HHHHHHhc-C-CEEEEEcCChHHHHHHHHHHHHcCCCCC---------------------Cc----
Q 043102 398 VREVIFLG------TIEVVKRT-G-CKYTGITLAEKQLKYAGIKVKEADLERN---------------------DR---- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G-~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------------D~---- 444 (525)
..+|||+| +..+|+.. + ++|+|+|+|+++++.++++++..|+..- |.
T Consensus 84 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d 163 (274)
T 3ajd_A 84 DDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLD 163 (274)
T ss_dssp TCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEE
T ss_pred cCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEc
Confidence 45999999 77788753 4 7999999999999999999998887421 22
Q ss_pred ----ccCc----------------ccHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 445 ----SFGH----------------EYMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 445 ----~vg~----------------~~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
..|. +....+++.+.++|||||++++.+.+.
T Consensus 164 ~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 164 APCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp ECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 1121 345789999999999999999977655
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00031 Score=71.88 Aligned_cols=75 Identities=19% Similarity=0.112 Sum_probs=59.1
Q ss_pred CCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----Cc-----------------ccC
Q 043102 398 VREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN-----DR-----------------SFG 447 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D~-----------------~vg 447 (525)
+.+|||+| ++++|... +++|+|+|+|+++++.|+++++.+|++.- |. -.|
T Consensus 204 ~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~npPyg 283 (354)
T 3tma_A 204 GMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANPPHG 283 (354)
T ss_dssp TCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECCCSC
T ss_pred CCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECCCCc
Confidence 34899999 77888753 48999999999999999999999998621 22 011
Q ss_pred ---------cccHHHHHHHHHhccCCCcEEEEEE
Q 043102 448 ---------HEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 448 ---------~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
...+..+++++.++|||||++++-+
T Consensus 284 ~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 284 LRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317 (354)
T ss_dssp C----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred CccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 1225789999999999999999854
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0003 Score=72.77 Aligned_cols=78 Identities=15% Similarity=0.138 Sum_probs=57.0
Q ss_pred CCCeehhhc-----HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----Cc---------------c----c
Q 043102 397 KVREVIFLG-----TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN-----DR---------------S----F 446 (525)
Q Consensus 397 ~~~rVLDIG-----a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D~---------------~----v 446 (525)
+..+||||| ++.+++.. +.+|+|+|+|+++++.|++++++.|+..- |. . .
T Consensus 172 ~~~~VLDlGG~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~ 251 (373)
T 2qm3_A 172 ENKDIFVLGDDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPE 251 (373)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCS
T ss_pred CCCEEEEECCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCC
Confidence 345999998 77777652 36999999999999999999988776311 21 0 1
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
+......+++++.++|||||++++-++.
T Consensus 252 ~~~~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 252 TLEAIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp SHHHHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred chHHHHHHHHHHHHHcccCCeEEEEEEe
Confidence 2223578999999999999965444443
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00011 Score=73.12 Aligned_cols=75 Identities=20% Similarity=0.311 Sum_probs=55.2
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHc--CC-------CC-C------Cc------------
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEA--DL-------ER-N------DR------------ 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~--gl-------~d-~------D~------------ 444 (525)
.+||||| +++++++...+|++||+|+++++.|++++ +. ++ .+ + |+
T Consensus 77 ~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~fD~ 155 (281)
T 1mjf_A 77 KRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFDV 155 (281)
T ss_dssp CEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCEEE
T ss_pred CeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccCCeeE
Confidence 4999999 67777763369999999999999999987 43 33 21 2 22
Q ss_pred -------ccCc-cc--HHHHHHHHHhccCCCcEEEEEEec
Q 043102 445 -------SFGH-EY--MEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 445 -------~vg~-~~--~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
+.+. .. ..++++.+.++|||||+++++...
T Consensus 156 Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 195 (281)
T 1mjf_A 156 IIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS 195 (281)
T ss_dssp EEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 1111 12 378999999999999999998643
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=97.38 E-value=4.1e-05 Score=74.53 Aligned_cols=76 Identities=13% Similarity=0.116 Sum_probs=54.3
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcC-----CCC-----C--CcccCcccHHHHHHHH
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEAD-----LER-----N--DRSFGHEYMEEFFGCC 458 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~g-----l~d-----~--D~~vg~~~~~~~f~~i 458 (525)
..+||||| +..+++.. |++|+|+|+|+++++.|+++..... ..+ . |..+. .....+++++
T Consensus 86 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~-~~~~~~l~~~ 164 (269)
T 1p91_A 86 ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIR-IYAPCKAEEL 164 (269)
T ss_dssp CCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEE-ESCCCCHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEE-eCChhhHHHH
Confidence 34999999 77788764 7899999999999999998753211 110 0 33110 1113568999
Q ss_pred HhccCCCcEEEEEEec
Q 043102 459 ESLIAKDGLFVLQFIS 474 (525)
Q Consensus 459 ~r~LkpGG~~viq~i~ 474 (525)
.++|||||++++.+..
T Consensus 165 ~~~L~pgG~l~~~~~~ 180 (269)
T 1p91_A 165 ARVVKPGGWVITATPG 180 (269)
T ss_dssp HHHEEEEEEEEEEEEC
T ss_pred HHhcCCCcEEEEEEcC
Confidence 9999999999997654
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00018 Score=75.01 Aligned_cols=76 Identities=17% Similarity=0.247 Sum_probs=59.9
Q ss_pred CCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCC-C------Cc-------------------
Q 043102 398 VREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLER-N------DR------------------- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d-~------D~------------------- 444 (525)
+.+|||+| ++.+|+. |+ +|+|||+|+++++.|+++++..|+++ + |.
T Consensus 213 ~~~VLDl~cGtG~~sl~la~~-ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~ 291 (385)
T 2b78_A 213 GKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII 291 (385)
T ss_dssp TCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEeeccCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEE
Confidence 45999999 7888875 65 99999999999999999999988864 3 21
Q ss_pred ---ccC---------cccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 445 ---SFG---------HEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 445 ---~vg---------~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
..+ .+.+.++++.+.++|||||++++.+..
T Consensus 292 DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~ 333 (385)
T 2b78_A 292 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 333 (385)
T ss_dssp CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 111 134666788999999999999987653
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00032 Score=67.31 Aligned_cols=79 Identities=9% Similarity=0.008 Sum_probs=62.4
Q ss_pred Ceehhhc----HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCC--CCC------Cc--c-------------------
Q 043102 399 REVIFLG----TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADL--ERN------DR--S------------------- 445 (525)
Q Consensus 399 ~rVLDIG----a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl--~d~------D~--~------------------- 445 (525)
.+||||| ++.+|+..+++|++|+.+++..+.|++.++++|+ .++ |+ .
T Consensus 32 ~~VLEiGtGySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~ 111 (202)
T 3cvo_A 32 EVILEYGSGGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYP 111 (202)
T ss_dssp SEEEEESCSHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHH
T ss_pred CEEEEECchHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHHHh
Confidence 3899999 7888874479999999999999999999999998 544 31 0
Q ss_pred ----------------cCcccHHHHHHHHHhccCCCcEEEEEEecCCC
Q 043102 446 ----------------FGHEYMEEFFGCCESLIAKDGLFVLQFISIPD 477 (525)
Q Consensus 446 ----------------vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~ 477 (525)
+.-+....++..+.++|+|||+++++.++...
T Consensus 112 ~~i~~~~~~~~fDlIfIDg~k~~~~~~~~l~~l~~GG~Iv~DNv~~r~ 159 (202)
T 3cvo_A 112 LAVWRTEGFRHPDVVLVDGRFRVGCALATAFSITRPVTLLFDDYSQRR 159 (202)
T ss_dssp HGGGGCTTCCCCSEEEECSSSHHHHHHHHHHHCSSCEEEEETTGGGCS
T ss_pred hhhhccccCCCCCEEEEeCCCchhHHHHHHHhcCCCeEEEEeCCcCCc
Confidence 11123458888889999999999998865543
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.38 E-value=3.6e-05 Score=72.95 Aligned_cols=104 Identities=13% Similarity=0.181 Sum_probs=65.5
Q ss_pred CCCeehhhc------HHHHHHhcC------CEEEEEcCChHHHHHHHHHHHHcCC----CCC------Cc----------
Q 043102 397 KVREVIFLG------TIEVVKRTG------CKYTGITLAEKQLKYAGIKVKEADL----ERN------DR---------- 444 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G------~~VtGIdlS~eql~~Ar~r~~~~gl----~d~------D~---------- 444 (525)
+..+||||| +..+++..+ ++|+|+|+|+++++.|++++++.++ ..+ |.
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 159 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE 159 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence 345999999 677777644 6999999999999999999987763 111 22
Q ss_pred -------ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcc-cCchhHHhhcccCCCCCC
Q 043102 445 -------SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEF-RLSSDFMKEYIFPGGCLP 501 (525)
Q Consensus 445 -------~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~-~~~~~fi~kYIFPGg~LP 501 (525)
.+. .....+++.+.++|||||++++.......+..... +....|..+.+++-.+.|
T Consensus 160 ~~~fD~I~~~-~~~~~~~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 223 (227)
T 2pbf_A 160 LGLFDAIHVG-ASASELPEILVDLLAENGKLIIPIEEDYTQVLYEITKKNGKIIKDRLFDVCFVS 223 (227)
T ss_dssp HCCEEEEEEC-SBBSSCCHHHHHHEEEEEEEEEEEEETTEEEEEEEECSCC-CEEEEEEEECCCB
T ss_pred CCCcCEEEEC-CchHHHHHHHHHhcCCCcEEEEEEccCCceEEEEEEEeCCeEEEEEeccEEEEe
Confidence 111 11124568899999999999997654322221111 122345445555444443
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00015 Score=68.77 Aligned_cols=74 Identities=18% Similarity=0.269 Sum_probs=54.2
Q ss_pred CCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHc-CC-------CC---------C-Cc---ccCc
Q 043102 398 VREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEA-DL-------ER---------N-DR---SFGH 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~-gl-------~d---------~-D~---~vg~ 448 (525)
..+|||+| ++.+++.. +++|+|+|+|+++++.+++++++. ++ .+ . |. ....
T Consensus 74 ~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~~ 153 (227)
T 1g8a_A 74 GKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQ 153 (227)
T ss_dssp TCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCS
T ss_pred CCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECCCC
Confidence 45999999 77888764 379999999999999999887543 11 11 0 22 1122
Q ss_pred cc-HHHHHHHHHhccCCCcEEEEE
Q 043102 449 EY-MEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 449 ~~-~~~~f~~i~r~LkpGG~~viq 471 (525)
.+ ...+++++.++|||||++++.
T Consensus 154 ~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 154 PTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HhHHHHHHHHHHHhcCCCCEEEEE
Confidence 22 345699999999999999987
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00011 Score=73.47 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=55.9
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcC--CCC-C-------------------Cc-----
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEAD--LER-N-------------------DR----- 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~g--l~d-~-------------------D~----- 444 (525)
.+||||| +.++++.. +.+|++||+|+++++.|++++...+ +++ + |.
T Consensus 80 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~ 159 (283)
T 2i7c_A 80 KNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDS 159 (283)
T ss_dssp CEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEEC
T ss_pred CeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEEcC
Confidence 4999999 66777653 5799999999999999999875421 211 1 22
Q ss_pred --ccCcc-cH--HHHHHHHHhccCCCcEEEEEEe
Q 043102 445 --SFGHE-YM--EEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 445 --~vg~~-~~--~~~f~~i~r~LkpGG~~viq~i 473 (525)
+.+.. .. .++++.+.++|||||+++++..
T Consensus 160 ~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 160 SDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp CCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred CCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 12221 22 7999999999999999999864
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0002 Score=69.26 Aligned_cols=38 Identities=5% Similarity=-0.184 Sum_probs=31.5
Q ss_pred Ceehhhc------HHHHHHh---cCCEEEEEcCChHHHHHHHHHHHH
Q 043102 399 REVIFLG------TIEVVKR---TGCKYTGITLAEKQLKYAGIKVKE 436 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~---~G~~VtGIdlS~eql~~Ar~r~~~ 436 (525)
.+|||+| ++.+++. .+++|+|+|+|+++++.|++++..
T Consensus 53 ~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~ 99 (250)
T 1o9g_A 53 VTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLAL 99 (250)
T ss_dssp EEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHT
T ss_pred CeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHH
Confidence 3999999 6777765 268999999999999999976543
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=8.4e-05 Score=76.05 Aligned_cols=121 Identities=15% Similarity=0.093 Sum_probs=80.0
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHH----HcCC----CCCCc--------ccCcccHHHHH
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVK----EADL----ERNDR--------SFGHEYMEEFF 455 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~----~~gl----~d~D~--------~vg~~~~~~~f 455 (525)
.+||||| +..+++++ +++++++|+ +++++.|++.-. ...+ ..-|. ++..+....++
T Consensus 195 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l 273 (358)
T 1zg3_A 195 ESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKIL 273 (358)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCCSSEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHH
T ss_pred CEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccCCCcEEEeCccCCCCCCceEEEEcccccCCCHHHHHHHH
Confidence 4999999 77778764 689999999 688887775200 0001 00144 23333455999
Q ss_pred HHHHhccCC---CcEEEEEEecCCCcchh----cccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 456 GCCESLIAK---DGLFVLQFISIPDERYN----EFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 456 ~~i~r~Lkp---GG~~viq~i~~~~~~~~----~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
+++.++||| ||+++|.+...++.... ......++..- ..+++...+.+++.+.++++ ||+++-..
T Consensus 274 ~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~-~~~~g~~~t~~e~~~ll~~a-Gf~~~~~~ 345 (358)
T 1zg3_A 274 KNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVML-TMFLGKERTKQEWEKLIYDA-GFSSYKIT 345 (358)
T ss_dssp HHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHH-HHHSCCCEEHHHHHHHHHHT-TCCEEEEE
T ss_pred HHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHh-ccCCCCCCCHHHHHHHHHHc-CCCeeEEE
Confidence 999999999 99999988776643210 01111122111 14677888999999999995 99876554
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0001 Score=74.78 Aligned_cols=77 Identities=12% Similarity=0.101 Sum_probs=56.9
Q ss_pred CCCeehhhc------HHHHHHhcC--CEEEEEcCChHHHHHHHHHHHHcC----------CCCC----------------
Q 043102 397 KVREVIFLG------TIEVVKRTG--CKYTGITLAEKQLKYAGIKVKEAD----------LERN---------------- 442 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G--~~VtGIdlS~eql~~Ar~r~~~~g----------l~d~---------------- 442 (525)
+..+||||| ++.+++..| ++|+|+|+|+++++.|+++++..| +.++
T Consensus 105 ~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~ 184 (336)
T 2b25_A 105 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK 184 (336)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccC
Confidence 345999999 677787644 899999999999999999987532 1111
Q ss_pred ----Cc-ccCcccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 443 ----DR-SFGHEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 443 ----D~-~vg~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
|. .+.......+++++.++|||||++++...
T Consensus 185 ~~~fD~V~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 185 SLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp ---EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred CCCeeEEEECCCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 22 11223344589999999999999997654
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00043 Score=68.65 Aligned_cols=74 Identities=14% Similarity=0.181 Sum_probs=54.1
Q ss_pred CCCeehhhc------HHHHHHhcCC-EEEEEcC-ChHHHHHHHHHH-----HHcCCC----CC-----------------
Q 043102 397 KVREVIFLG------TIEVVKRTGC-KYTGITL-AEKQLKYAGIKV-----KEADLE----RN----------------- 442 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~-~VtGIdl-S~eql~~Ar~r~-----~~~gl~----d~----------------- 442 (525)
+..+||||| ++.+++. |+ +|+|+|+ |+++++.|++++ +..++. ++
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR 157 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred CCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence 345999999 6777774 76 9999999 899999999998 554432 11
Q ss_pred -------Cccc------CcccHHHHHHHHHhccC---C--CcEEEEE
Q 043102 443 -------DRSF------GHEYMEEFFGCCESLIA---K--DGLFVLQ 471 (525)
Q Consensus 443 -------D~~v------g~~~~~~~f~~i~r~Lk---p--GG~~viq 471 (525)
|..+ ..++...+++.+.++|| | ||++++-
T Consensus 158 ~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 158 CTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred hccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 2211 24568899999999999 9 9998774
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=97.31 E-value=1.7e-05 Score=75.72 Aligned_cols=75 Identities=11% Similarity=0.102 Sum_probs=53.2
Q ss_pred CCeehhhc------HHHHHHhcC-------CEEEEEcCChHHHHHHHHHHHHcC-----CCCC-----------------
Q 043102 398 VREVIFLG------TIEVVKRTG-------CKYTGITLAEKQLKYAGIKVKEAD-----LERN----------------- 442 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G-------~~VtGIdlS~eql~~Ar~r~~~~g-----l~d~----------------- 442 (525)
..+||||| +..+++..+ .+|+|+|+|+++++.|++++++.+ ...-
T Consensus 85 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 164 (227)
T 1r18_A 85 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPY 164 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCSE
T ss_pred CCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcCCCc
Confidence 35999999 667777544 599999999999999999987654 1110
Q ss_pred Cc-ccCcccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 443 DR-SFGHEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 443 D~-~vg~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
|. .+. .-...+.+++.++|||||++++...
T Consensus 165 D~I~~~-~~~~~~~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 165 NAIHVG-AAAPDTPTELINQLASGGRLIVPVG 195 (227)
T ss_dssp EEEEEC-SCBSSCCHHHHHTEEEEEEEEEEES
T ss_pred cEEEEC-CchHHHHHHHHHHhcCCCEEEEEEe
Confidence 22 111 0112345889999999999998654
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00034 Score=72.83 Aligned_cols=78 Identities=15% Similarity=0.090 Sum_probs=61.6
Q ss_pred CCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC------Cc-----------------cc
Q 043102 397 KVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN------DR-----------------SF 446 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~-----------------~v 446 (525)
++.+|||+| ++.+|+. |+ +|+|+|+|+++++.|+++++..|+.++ |. .+
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 345999999 7888875 66 999999999999999999998887532 21 11
Q ss_pred Cc--------------ccHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 447 GH--------------EYMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 447 g~--------------~~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
.. +.+..++..+.++|||||++++.+...
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 11 457789999999999999998876543
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00022 Score=71.95 Aligned_cols=75 Identities=16% Similarity=0.224 Sum_probs=53.5
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHH--cCCCC-C--------------------Cc----
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKE--ADLER-N--------------------DR---- 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~--~gl~d-~--------------------D~---- 444 (525)
.+||||| +..+++.. ..+|++||+|+++++.|++++.. .++.+ + |.
T Consensus 97 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~d 176 (304)
T 3bwc_A 97 ERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVIID 176 (304)
T ss_dssp CEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEEEE
T ss_pred CeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEEEC
Confidence 4999999 77777754 57999999999999999998742 11111 1 22
Q ss_pred ---ccCc-ccH--HHHHHHHHhccCCCcEEEEEEe
Q 043102 445 ---SFGH-EYM--EEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 445 ---~vg~-~~~--~~~f~~i~r~LkpGG~~viq~i 473 (525)
+.+. ..+ .++++.+.++|||||+++++.-
T Consensus 177 ~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 211 (304)
T 3bwc_A 177 TTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGE 211 (304)
T ss_dssp CC---------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCccccchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 1111 111 6899999999999999999853
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=97.26 E-value=5.3e-05 Score=75.14 Aligned_cols=74 Identities=15% Similarity=0.045 Sum_probs=54.0
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH--cCCCC-C------Cc----------ccCcccHHH
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE--ADLER-N------DR----------SFGHEYMEE 453 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~--~gl~d-~------D~----------~vg~~~~~~ 453 (525)
.+||||| +.+++++ +.+|++||+|+++++.|++++.. .++.+ + |+ .+...+...
T Consensus 74 ~~VL~iG~G~G~~~~~ll~~-~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d~~dp~~ 152 (262)
T 2cmg_A 74 KEVLIVDGFDLELAHQLFKY-DTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCLQEPDIH 152 (262)
T ss_dssp CEEEEESSCCHHHHHHHTTS-SCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEESSCCCHH
T ss_pred CEEEEEeCCcCHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEECCCChHH
Confidence 4999999 6667776 69999999999999999987643 12221 1 22 111222235
Q ss_pred HHHHHHhccCCCcEEEEEEe
Q 043102 454 FFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 454 ~f~~i~r~LkpGG~~viq~i 473 (525)
|++.+.++|||||+++++.-
T Consensus 153 ~~~~~~~~L~pgG~lv~~~~ 172 (262)
T 2cmg_A 153 RIDGLKRMLKEDGVFISVAK 172 (262)
T ss_dssp HHHHHHTTEEEEEEEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEEcC
Confidence 99999999999999999853
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00038 Score=72.24 Aligned_cols=77 Identities=9% Similarity=0.015 Sum_probs=61.3
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----Cc-----------------cc---
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----DR-----------------SF--- 446 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D~-----------------~v--- 446 (525)
+.+|||+| ++.+|+. +.+|+|+|+|+++++.|+++++..|+++. |. .+
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP 288 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP 288 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCC
Confidence 34899999 7888886 78999999999999999999988887532 21 11
Q ss_pred --C---------cccHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 447 --G---------HEYMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 447 --g---------~~~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
+ .+.+..+++.+.++|||||++++.+...
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 289 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 1 1457789999999999999999876543
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00061 Score=73.12 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=60.0
Q ss_pred Ceehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc------c--
Q 043102 399 REVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR------S-- 445 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~------~-- 445 (525)
.+|||+| ++.+|+.. +++|+++|+|+++++.|+++++..|+... |. .
T Consensus 103 ~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~PcSg 182 (464)
T 3m6w_A 103 ERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAPCSG 182 (464)
T ss_dssp CEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEECCCCC
T ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEECCCcCC
Confidence 4999999 77888763 37999999999999999999998887511 22 1
Q ss_pred cCc--------------------ccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 446 FGH--------------------EYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 446 vg~--------------------~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
.|. .....+++.+.++|||||+++..+.+..
T Consensus 183 ~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~ 233 (464)
T 3m6w_A 183 EGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFA 233 (464)
T ss_dssp GGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred ccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCc
Confidence 010 0127789999999999999998776553
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0023 Score=67.50 Aligned_cols=57 Identities=18% Similarity=0.297 Sum_probs=41.6
Q ss_pred eeEEEecCCCCCHHHHHHHHHhhh-hcCCCCeEEeccCCC--C--CCchhhhchHHHHHhhhc
Q 043102 210 LLKWSTGPPVPFVAASKASLELGH-IQGRRGIWFRGAYQG--Y--GFHEDGLKDLSINSCMTY 267 (525)
Q Consensus 210 l~~~~y~HPv~~~~a~~aq~~l~~-iqG~~~~~fcGay~g--~--GfHEdg~~Sgl~aA~~ll 267 (525)
+.+|.+.-|+|+....+..+++.. ++. .||++||-+-. | +--+.+++||+.||+.|+
T Consensus 415 v~r~~~ayP~y~~~~~~~~~~~~~~l~~-~~l~~~GR~g~~~Y~~~n~D~a~~~g~~aa~~I~ 476 (513)
T 4gde_A 415 HRRFDHGYPTPTLEREGTLTQILPKLQD-KDIWSRGRFGSWRYEVGNQDHSFMLGVEAVDNIV 476 (513)
T ss_dssp EEEEEEEEECCBTTHHHHHHHHHHHHHH-TTEEECSTTTTCCGGGCSHHHHHHHHHHHHHHHH
T ss_pred EEECCCeecccCHhHHHHHHHHHHHHhh-cCcEEecCCcccCcCCCCHHHHHHHHHHHHHHHH
Confidence 447888899999887665544433 444 58999995432 2 345779999999999985
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00065 Score=70.76 Aligned_cols=77 Identities=13% Similarity=0.138 Sum_probs=61.3
Q ss_pred CCCeehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHHHHHcCC-CCC------Cc-----------------c
Q 043102 397 KVREVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIKVKEADL-ERN------DR-----------------S 445 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r~~~~gl-~d~------D~-----------------~ 445 (525)
+..+|||+| ++.+|+. | .+|+|||+|+++++.|+++++..|+ .++ |. .
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 345999999 7888875 5 4999999999999999999998888 532 22 1
Q ss_pred cC--------------cccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 446 FG--------------HEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 446 vg--------------~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
+. .+.+..++..+.++|||||++++.+..
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 11 156789999999999999999987654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0006 Score=76.70 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=61.0
Q ss_pred CCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCC-CC------Cc------------------
Q 043102 397 KVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLE-RN------DR------------------ 444 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~-d~------D~------------------ 444 (525)
++.+|||+| ++.+|+. |+ +|++||+|+++++.|+++++..|++ ++ |.
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~-ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLG-GARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 334999999 7888874 66 6999999999999999999999987 33 21
Q ss_pred -ccC-----------cccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 445 -SFG-----------HEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 445 -~vg-----------~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
..+ .+.+..+++.+.++|||||++++.+-.
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 111 246778899999999999999976543
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0017 Score=68.62 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=42.2
Q ss_pred eeeEEEecCCCCCHHHHHHHHHhhh-hcCCCCeEEeccCCCCCCchhhhchHHHHHhhhc
Q 043102 209 TLLKWSTGPPVPFVAASKASLELGH-IQGRRGIWFRGAYQGYGFHEDGLKDLSINSCMTY 267 (525)
Q Consensus 209 il~~~~y~HPv~~~~a~~aq~~l~~-iqG~~~~~fcGay~g~GfHEdg~~Sgl~aA~~ll 267 (525)
...+|...-|.|++........+.. .+...+++|||+|+..+.-|+++.||.+||+.++
T Consensus 431 ~~~~w~~~~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~~v~gai~sG~~aA~~il 490 (504)
T 1sez_A 431 NHLYWSKAFPLYGHNYDSVLDAIDKMEKNLPGLFYAGNHRGGLSVGKALSSGCNAADLVI 490 (504)
T ss_dssp EEEEEEEEEECCCTTHHHHHHHHHHHHHHSTTEEECCSSSSCSSHHHHHHHHHHHHHHHH
T ss_pred EEeECCCCCCccCcCHHHHHHHHHHHHHhCCCEEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 3457776667777765433333322 2335789999999986678999999999999985
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00039 Score=69.57 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=52.1
Q ss_pred Ceehhhc----------HHHHHHhc-----CCEEEEEcCChHHHHHHHHHHHH-----------------------cC--
Q 043102 399 REVIFLG----------TIEVVKRT-----GCKYTGITLAEKQLKYAGIKVKE-----------------------AD-- 438 (525)
Q Consensus 399 ~rVLDIG----------a~~lA~~~-----G~~VtGIdlS~eql~~Ar~r~~~-----------------------~g-- 438 (525)
.+|||+| |+.+++.. +++|+|+|+|+++++.|++.+-. .|
T Consensus 107 ~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 186 (274)
T 1af7_A 107 YRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLV 186 (274)
T ss_dssp EEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEE
T ss_pred cEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCce
Confidence 3999999 34456542 36999999999999999987410 01
Q ss_pred ----------------CCC-------C-Cc--------ccCcccHHHHHHHHHhccCCCcEEEE
Q 043102 439 ----------------LER-------N-DR--------SFGHEYMEEFFGCCESLIAKDGLFVL 470 (525)
Q Consensus 439 ----------------l~d-------~-D~--------~vg~~~~~~~f~~i~r~LkpGG~~vi 470 (525)
+.+ . |. ++..+.....++++.+.|||||.+++
T Consensus 187 ~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 187 RVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred eechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 111 1 32 33445668999999999999999987
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00022 Score=64.90 Aligned_cols=96 Identities=10% Similarity=0.016 Sum_probs=62.9
Q ss_pred CCCeehhhcHHHHHHhcCCEEEEEcCChHHHHHHHHHHHHc-----------CC---CCC--Cc-----ccC-c-ccHHH
Q 043102 397 KVREVIFLGTIEVVKRTGCKYTGITLAEKQLKYAGIKVKEA-----------DL---ERN--DR-----SFG-H-EYMEE 453 (525)
Q Consensus 397 ~~~rVLDIGa~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~-----------gl---~d~--D~-----~vg-~-~~~~~ 453 (525)
+..+|||||.- .| +||+|++|++.|+++.... .. .+. |. .+. . .+...
T Consensus 12 ~g~~vL~~~~g--------~v-~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~ 82 (176)
T 2ld4_A 12 AGQFVAVVWDK--------SS-PVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAE 82 (176)
T ss_dssp TTSEEEEEECT--------TS-CHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCCCHH
T ss_pred CCCEEEEecCC--------ce-eeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhhhcccCHHH
Confidence 34589998821 02 3999999999999986421 11 111 44 111 2 56799
Q ss_pred HHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEE
Q 043102 454 FFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYN 519 (525)
Q Consensus 454 ~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~ 519 (525)
++++++|+|||||++++....... .. +..+..+.+++.+.++++ || |.
T Consensus 83 ~l~~~~r~LkpgG~l~~~~~~~~~-----~~-----------~~~~~~~~~~~~~~l~~a-Gf-i~ 130 (176)
T 2ld4_A 83 ILAEIARILRPGGCLFLKEPVETA-----VD-----------NNSKVKTASKLCSALTLS-GL-VE 130 (176)
T ss_dssp HHHHHHHHEEEEEEEEEEEEEESS-----SC-----------SSSSSCCHHHHHHHHHHT-TC-EE
T ss_pred HHHHHHHHCCCCEEEEEEcccccc-----cc-----------cccccCCHHHHHHHHHHC-CC-cE
Confidence 999999999999999995332111 00 012345789999999985 88 55
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00087 Score=72.13 Aligned_cols=78 Identities=12% Similarity=0.151 Sum_probs=59.9
Q ss_pred CCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc------c
Q 043102 398 VREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR------S 445 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~------~ 445 (525)
..+|||+| +..+|+.. +++|+++|+|+++++.++++++..|+..- |. .
T Consensus 118 g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~Pc 197 (479)
T 2frx_A 118 PQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPC 197 (479)
T ss_dssp CSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECCC
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCCc
Confidence 45999999 78888764 47999999999999999999998876421 22 1
Q ss_pred --cCc--------------------ccHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 446 --FGH--------------------EYMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 446 --vg~--------------------~~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
.|. .....+++.+.++|||||++++.+.+.
T Consensus 198 Sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 198 SGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 110 013478999999999999999977655
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00066 Score=69.35 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=61.1
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc----------ccC-cccHHHH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------DR----------SFG-HEYMEEF 454 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~----------~vg-~~~~~~~ 454 (525)
+.+|||+| ++. |+ .+++|+|+|+|+++++.|+++++..|+.++ |. .+. ......+
T Consensus 196 ~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~~~~~~ 273 (336)
T 2yx1_A 196 NDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPKFAHKF 273 (336)
T ss_dssp TCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTTTGGGG
T ss_pred CCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcHhHHHH
Confidence 34899999 677 76 478999999999999999999999888644 33 111 2344588
Q ss_pred HHHHHhccCCCcEEEEEEecCC
Q 043102 455 FGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 455 f~~i~r~LkpGG~~viq~i~~~ 476 (525)
++.+.++|+|||++++.+....
T Consensus 274 l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 274 IDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp HHHHHHHEEEEEEEEEEEEESS
T ss_pred HHHHHHHcCCCCEEEEEEeecC
Confidence 9999999999999999877543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00093 Score=71.54 Aligned_cols=78 Identities=12% Similarity=0.172 Sum_probs=59.9
Q ss_pred Ceehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc------c-
Q 043102 399 REVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR------S- 445 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~------~- 445 (525)
.+|||+| ++.+|+.. +++|+++|+|+++++.++++++..|+.+- |. .
T Consensus 107 ~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~DaPCS 186 (456)
T 3m4x_A 107 EKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPCS 186 (456)
T ss_dssp CEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEECCCC
T ss_pred CEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEECCCCC
Confidence 4999999 77788753 47999999999999999999999887532 22 0
Q ss_pred -cCc--------------------ccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 446 -FGH--------------------EYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 446 -vg~--------------------~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
.|. .....+++.+.++|||||+++..+.+..
T Consensus 187 g~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 238 (456)
T 3m4x_A 187 GEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFA 238 (456)
T ss_dssp CGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred CccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecc
Confidence 110 1123789999999999999998776653
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0013 Score=68.61 Aligned_cols=77 Identities=10% Similarity=0.031 Sum_probs=49.8
Q ss_pred HHhccceeeeccEEEEEecCCCceeeCccCCccc-EEEEeCCCceEeCCEEEEecChHHHHHhhcC-CCCHHHHhhccCC
Q 043102 79 ESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSS-CTVVCGDGSREFYNSCVMALHAPDALKILGN-QATFDETRTGGAF 156 (525)
Q Consensus 79 ~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~g-v~v~~~~g~~e~fD~VV~A~hadqAL~lL~~-~~t~~E~~iLg~f 156 (525)
+.+|+++.++..+.++..+. .+ |.|.+ +|++..+|+||+|+++..+.+|+.+ ..+...++.+..+
T Consensus 223 ~~lg~~i~~~~~V~~i~~~~------------~~~v~v~~-~~~~~~ad~VI~a~p~~~~~~l~~~p~lp~~~~~~i~~~ 289 (453)
T 2yg5_A 223 EALGDDVFLNAPVRTVKWNE------------SGATVLAD-GDIRVEASRVILAVPPNLYSRISYDPPLPRRQHQMHQHQ 289 (453)
T ss_dssp HHHGGGEECSCCEEEEEEET------------TEEEEEET-TTEEEEEEEEEECSCGGGGGGSEEESCCCHHHHHHGGGE
T ss_pred HhcCCcEEcCCceEEEEEeC------------CceEEEEE-CCeEEEcCEEEEcCCHHHHhcCEeCCCCCHHHHHHHhcC
Confidence 34466777776666664321 14 67776 6667889999999999988887742 2344555666666
Q ss_pred c-----eeEeccCCCCC
Q 043102 157 H-----DIFLHCDKNSM 168 (525)
Q Consensus 157 ~-----~~vlHtD~s~m 168 (525)
. .+.+.-|..+.
T Consensus 290 ~~~~~~kv~l~~~~~~w 306 (453)
T 2yg5_A 290 SLGLVIKVHAVYETPFW 306 (453)
T ss_dssp EECCEEEEEEEESSCGG
T ss_pred CCcceEEEEEEECCCCC
Confidence 5 55565565443
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.017 Score=60.70 Aligned_cols=59 Identities=19% Similarity=0.072 Sum_probs=42.9
Q ss_pred cEEEEeCCCceEeCCEEEEecChHHHHHhhc---CCCCHHHHhhccCCc-----eeEeccCCCCCCC
Q 043102 112 SCTVVCGDGSREFYNSCVMALHAPDALKILG---NQATFDETRTGGAFH-----DIFLHCDKNSMPQ 170 (525)
Q Consensus 112 gv~v~~~~g~~e~fD~VV~A~hadqAL~lL~---~~~t~~E~~iLg~f~-----~~vlHtD~s~mP~ 170 (525)
+|.|++.+|.+..+|+||+|+++..+.++|. ...++..++.+..+. .+++.-|..+.+.
T Consensus 246 ~v~v~~~~g~~~~ad~vI~a~~~~~l~~~~~~~~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~ 312 (472)
T 1b37_A 246 GVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPE 312 (472)
T ss_dssp CEEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSEEECEEEEEEECSSCCSCC
T ss_pred cEEEEECCCCEEEcCEEEEecCHHHhccCCeeECCCCCHHHHHHHHhcCCcceeEEEEECCCcCCCC
Confidence 6889999998889999999999998888663 222444455555555 6677777766554
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0022 Score=62.59 Aligned_cols=74 Identities=14% Similarity=0.199 Sum_probs=47.7
Q ss_pred CCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHc-CC----------------CCC-Cc---ccCc
Q 043102 398 VREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEA-DL----------------ERN-DR---SFGH 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~-gl----------------~d~-D~---~vg~ 448 (525)
+.+|||+| +..+|+.. .++|+|+|+|++|++...+.+++. ++ ... |. .+..
T Consensus 77 g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~ 156 (232)
T 3id6_C 77 GTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQ 156 (232)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEECCCC
T ss_pred CCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEecCCC
Confidence 45999999 66777652 579999999999875544444321 11 001 33 2223
Q ss_pred ccHHH-HHHHHHhccCCCcEEEEE
Q 043102 449 EYMEE-FFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 449 ~~~~~-~f~~i~r~LkpGG~~viq 471 (525)
.+... +.+.+.++|||||++++.
T Consensus 157 ~~~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 157 PDQTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHhCCCCeEEEEE
Confidence 34444 455666799999999985
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0023 Score=68.01 Aligned_cols=79 Identities=19% Similarity=0.173 Sum_probs=60.0
Q ss_pred CCeehhhc------HHHHHHhc-C-CEEEEEcCChHHHHHHHHHHHHcCCCCC-------------------Cc------
Q 043102 398 VREVIFLG------TIEVVKRT-G-CKYTGITLAEKQLKYAGIKVKEADLERN-------------------DR------ 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G-~~VtGIdlS~eql~~Ar~r~~~~gl~d~-------------------D~------ 444 (525)
..+|||+| +..+++.. + ++|+++|+|+++++.++++++..|+..- |.
T Consensus 260 g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~P 339 (450)
T 2yxl_A 260 GETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLDAP 339 (450)
T ss_dssp TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEECC
T ss_pred cCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEcCC
Confidence 34999999 77788754 3 7999999999999999999988776321 11
Q ss_pred --ccCc----c---------c-------HHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 445 --SFGH----E---------Y-------MEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 445 --~vg~----~---------~-------~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
..|. + + ...+++.+.++|||||++++.+.+..
T Consensus 340 csg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~ 393 (450)
T 2yxl_A 340 CTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF 393 (450)
T ss_dssp CCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred CCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 1110 1 1 16789999999999999998777654
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0026 Score=67.14 Aligned_cols=55 Identities=9% Similarity=-0.028 Sum_probs=41.6
Q ss_pred cEEEEeCCC---ceEeCCEEEEecChHHHHHhhcCCCCHHHHhhccCCc-----eeEeccCCCC
Q 043102 112 SCTVVCGDG---SREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH-----DIFLHCDKNS 167 (525)
Q Consensus 112 gv~v~~~~g---~~e~fD~VV~A~hadqAL~lL~~~~t~~E~~iLg~f~-----~~vlHtD~s~ 167 (525)
+|.|.+.+| ....||+||+|+++..+.+|+. ..++.+++.|..++ .+++.-|..+
T Consensus 269 ~v~v~~~~g~~~~~~~ad~vI~a~p~~~l~~l~~-~l~~~~~~~l~~~~~~~~~kv~l~~~~~~ 331 (489)
T 2jae_A 269 GVTVEYTAGGSKKSITADYAICTIPPHLVGRLQN-NLPGDVLTALKAAKPSSSGKLGIEYSRRW 331 (489)
T ss_dssp EEEEEEEETTEEEEEEESEEEECSCHHHHTTSEE-CCCHHHHHHHHTEECCCEEEEEEEESSCH
T ss_pred eEEEEEecCCeEEEEECCEEEECCCHHHHHhCcc-CCCHHHHHHHHhCCCccceEEEEEeCCCC
Confidence 677877766 4678999999999997766765 46777888888776 6666666544
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.002 Score=67.97 Aligned_cols=79 Identities=15% Similarity=0.204 Sum_probs=60.2
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc------c-
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR------S- 445 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~------~- 445 (525)
..+|||+| +..+++.. +++|+++|+|+++++.++++++..|+... |. .
T Consensus 247 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs 326 (429)
T 1sqg_A 247 GEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCS 326 (429)
T ss_dssp TCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECCCC
T ss_pred cCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeCCCC
Confidence 45999999 77888764 37999999999999999999988776322 22 0
Q ss_pred -cCc----c----------------cHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 446 -FGH----E----------------YMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 446 -vg~----~----------------~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
.|. + ....+++.+.++|||||++++.+.+..
T Consensus 327 g~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~ 378 (429)
T 1sqg_A 327 ATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 378 (429)
T ss_dssp CGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred cccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 110 1 125889999999999999999876553
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0055 Score=55.78 Aligned_cols=95 Identities=18% Similarity=0.128 Sum_probs=60.0
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHH--HcCCCC----C--Cc-------c--------cCc
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVK--EADLER----N--DR-------S--------FGH 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~--~~gl~d----~--D~-------~--------vg~ 448 (525)
..+||||| ++.++++ + +|+|||+|+++++. ..++. ...+.+ . |. + .+.
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~-~-~v~gvD~s~~~~~~-~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~~~~~~ 100 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKR-N-TVVSTDLNIRALES-HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDPIIGGG 100 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTT-S-EEEEEESCHHHHHT-CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCTTTBCC
T ss_pred CCeEEEeccCccHHHHHHHhc-C-cEEEEECCHHHHhc-ccCCeEEECChhhhcccCCCCEEEECCCCccCCccccccCC
Confidence 45999999 7777775 6 99999999999988 11110 000100 0 33 1 111
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
.....+++++.+.| |||++++..... ....++.+.++++ ||++....
T Consensus 101 ~~~~~~~~~~~~~l-pgG~l~~~~~~~-------------------------~~~~~l~~~l~~~-gf~~~~~~ 147 (170)
T 3q87_B 101 YLGREVIDRFVDAV-TVGMLYLLVIEA-------------------------NRPKEVLARLEER-GYGTRILK 147 (170)
T ss_dssp GGGCHHHHHHHHHC-CSSEEEEEEEGG-------------------------GCHHHHHHHHHHT-TCEEEEEE
T ss_pred cchHHHHHHHHhhC-CCCEEEEEEecC-------------------------CCHHHHHHHHHHC-CCcEEEEE
Confidence 23356788888888 999999865421 2345666677774 78766543
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00048 Score=72.75 Aligned_cols=104 Identities=13% Similarity=0.202 Sum_probs=63.2
Q ss_pred hHHHHhhhcccccc--------hHHHHhccccccchhccccCCCeehhhc------------HHHHHHh--cCCEEEEEc
Q 043102 364 TQACRHISRHYDLS--------NELFCLFLDESLTYSCALFKVREVIFLG------------TIEVVKR--TGCKYTGIT 421 (525)
Q Consensus 364 ~~s~~nIa~hYDl~--------nd~y~l~Ld~~m~ys~a~f~~~rVLDIG------------a~~lA~~--~G~~VtGId 421 (525)
...+..++..|+-. .++|+..|.+-. .+..+||||| ++.++++ .+++|+|||
T Consensus 181 ~~~fd~lA~~Y~tDK~~~~h~y~~~Ye~lL~~l~------~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVD 254 (419)
T 3sso_A 181 KPDLSELSSRYFTPKFGFLHWFTPHYDRHFRDYR------NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLD 254 (419)
T ss_dssp CCCHHHHHHHTTCTTBSSSCBCHHHHHHHHGGGT------TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEE
T ss_pred CccHHHHHHHhCCCcccccchHHHHHHHHHHhhc------CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEE
Confidence 44566667767521 245655554311 1235999998 3466665 379999999
Q ss_pred CChHHHHHHHHHHH--HcCCCC------------C-Cc-----ccCcccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 422 LAEKQLKYAGIKVK--EADLER------------N-DR-----SFGHEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 422 lS~eql~~Ar~r~~--~~gl~d------------~-D~-----~vg~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
+|++|.. ...++. .....+ . |. ..-..++..+|++++++|||||++++.++.
T Consensus 255 iSp~m~~-~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 255 IMDKSHV-DELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp SSCCGGG-CBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred CCHHHhh-cCCCcEEEEecccccchhhhhhcccCCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 9999831 000100 000000 0 22 111356789999999999999999998876
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0072 Score=60.16 Aligned_cols=42 Identities=14% Similarity=0.225 Sum_probs=36.0
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCC
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADL 439 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl 439 (525)
+..+||||| +..++++ +++|+|||+|+++++.|+++++..++
T Consensus 28 ~~~~VLDiG~G~G~lt~~L~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~ 75 (285)
T 1zq9_A 28 PTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPV 75 (285)
T ss_dssp TTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTT
T ss_pred CCCEEEEEcCcccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHhcCC
Confidence 345999999 7888876 88999999999999999999876554
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0055 Score=63.35 Aligned_cols=42 Identities=24% Similarity=0.139 Sum_probs=36.8
Q ss_pred Ceehhhc------HHHHHHhcCC--EEEEEcCChHHHHHHHHHHHHcCCCC
Q 043102 399 REVIFLG------TIEVVKRTGC--KYTGITLAEKQLKYAGIKVKEADLER 441 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~--~VtGIdlS~eql~~Ar~r~~~~gl~d 441 (525)
.+|||+| ++++|+. +. +|+|+|+|+++++.|+++++.+|+++
T Consensus 219 ~~vLD~gCGsG~~~i~~a~~-~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~ 268 (373)
T 3tm4_A 219 GSVLDPMCGSGTILIELALR-RYSGEIIGIEKYRKHLIGAEMNALAAGVLD 268 (373)
T ss_dssp CCEEETTCTTCHHHHHHHHT-TCCSCEEEEESCHHHHHHHHHHHHHTTCGG
T ss_pred CEEEEccCcCcHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHcCCCC
Confidence 3899999 7788875 55 99999999999999999999999844
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.003 Score=63.24 Aligned_cols=74 Identities=5% Similarity=0.039 Sum_probs=56.1
Q ss_pred Ceehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc--------ccCc
Q 043102 399 REVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR--------SFGH 448 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~--------~vg~ 448 (525)
.+||||| ++.++.. ..++|+++|+++.+++.+++++...|+..+ |. ++..
T Consensus 134 ~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~Le~ 213 (281)
T 3lcv_B 134 NTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPCLET 213 (281)
T ss_dssp SEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHHHHH
T ss_pred ceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHHhhh
Confidence 4999999 5555554 478999999999999999999999888644 32 1112
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
+....-| ++.+.|+|+|.++-..+
T Consensus 214 q~kg~g~-~ll~aL~~~~vvVSfp~ 237 (281)
T 3lcv_B 214 QQRGSGW-EVIDIVNSPNIVVTFPT 237 (281)
T ss_dssp HSTTHHH-HHHHHSSCSEEEEEEEC
T ss_pred hhhHHHH-HHHHHhCCCCEEEeccc
Confidence 2233556 89999999999987655
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.033 Score=63.28 Aligned_cols=84 Identities=12% Similarity=0.119 Sum_probs=53.5
Q ss_pred HHHHHHHh--ccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCceEeCCEEEEecChHHHHHh---hcCCCCHH
Q 043102 74 MMELFESL--GVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGSREFYNSCVMALHAPDALKI---LGNQATFD 148 (525)
Q Consensus 74 ~~~~~~~~--gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~~e~fD~VV~A~hadqAL~l---L~~~~t~~ 148 (525)
|..+.+.+ |+++.++..+.+|..+ . .||.|.+.+|.+..+|+||+|+++....+. +.......
T Consensus 533 ~~~l~~aLa~gl~I~l~t~V~~I~~~--------~----~~v~V~~~~G~~i~Ad~VIvA~P~~vL~~~~i~f~P~Lp~~ 600 (776)
T 4gut_A 533 YSVIIEKLAEGLDIQLKSPVQCIDYS--------G----DEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEK 600 (776)
T ss_dssp THHHHHHHHTTSCEESSCCEEEEECS--------S----SSEEEEETTCCEEEESEEEECCCHHHHHTTCSEEESCCCHH
T ss_pred HHHHHHHHHhCCcEEcCCeeEEEEEc--------C----CEEEEEECCCcEEEcCEEEECCCHHHHhhcccccCCCCCHH
Confidence 44555666 5666666666555331 1 268899889988899999999998766542 22223344
Q ss_pred HHhhccCCc-----eeEeccCCCCCC
Q 043102 149 ETRTGGAFH-----DIFLHCDKNSMP 169 (525)
Q Consensus 149 E~~iLg~f~-----~~vlHtD~s~mP 169 (525)
..+.+..+. .++|.-|..+++
T Consensus 601 ~~~ai~~l~~g~~~KV~l~f~~~FW~ 626 (776)
T 4gut_A 601 KMKAINSLGAGIIEKIALQFPYRFWD 626 (776)
T ss_dssp HHHHHHHEEEECCEEEEEECSSCTTH
T ss_pred HHHHHHhCCCeeEEEEEEecCccccc
Confidence 444444444 778887776654
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.011 Score=54.77 Aligned_cols=72 Identities=11% Similarity=0.044 Sum_probs=51.0
Q ss_pred CCCeehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHHHHHcCCCCC-------------Cc-------cc-Cc
Q 043102 397 KVREVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIKVKEADLERN-------------DR-------SF-GH 448 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r~~~~gl~d~-------------D~-------~v-g~ 448 (525)
+..+|||+| ++.+++. | .+|+|+|+|+++++.|+++++..++... |. +. ..
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~~ 127 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQRK 127 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSST
T ss_pred CcCEEEEeeCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCccccC
Confidence 345999999 7777875 5 4899999999999999999887665111 22 11 11
Q ss_pred ccHHHHHHHHHhccCCCcEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq 471 (525)
.....+++.+.++| ||.++++
T Consensus 128 ~~~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 128 HADRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp TTTHHHHHHHHHHC--SEEEEEE
T ss_pred CchHHHHHHHHHhc--CcEEEEE
Confidence 23467889999988 5555443
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.00067 Score=62.67 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=22.9
Q ss_pred Ceehhhc------HHHHHHhc---CCEEEEEcCChH
Q 043102 399 REVIFLG------TIEVVKRT---GCKYTGITLAEK 425 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~---G~~VtGIdlS~e 425 (525)
.+||||| ++.++++. +++|+|+|+|+.
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~ 59 (201)
T 2plw_A 24 KIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM 59 (201)
T ss_dssp EEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC
T ss_pred CEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc
Confidence 4899999 77888775 489999999984
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.006 Score=57.07 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=46.1
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHH-----------------HHHHHHHHHcCCCCC------Cc---cc
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQL-----------------KYAGIKVKEADLERN------DR---SF 446 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql-----------------~~Ar~r~~~~gl~d~------D~---~v 446 (525)
.+|||+| +..+|++ +++|+|||+|+.+. +..++...+.+. .. |. ..
T Consensus 27 ~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~-~~~D~Vlsd~~~~~~ 104 (191)
T 3dou_A 27 DAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGI-EKVDDVVSDAMAKVS 104 (191)
T ss_dssp CEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCCCCTTCEEEECCTTSSSHHHHHHHHHHHHTC-SSEEEEEECCCCCCC
T ss_pred CEEEEEeecCCHHHHHHHHc-CCcEEEEeccccccCCCeEEEEccccCHHHHHHHHHHhhcccC-CcceEEecCCCcCCC
Confidence 4999999 7788876 99999999998521 000000110000 01 22 11
Q ss_pred Cc---------ccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 447 GH---------EYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 447 g~---------~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
|. ......++.+.++|||||.+++....
T Consensus 105 g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~ 141 (191)
T 3dou_A 105 GIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQ 141 (191)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcC
Confidence 21 12356788999999999999987653
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0073 Score=58.07 Aligned_cols=113 Identities=14% Similarity=0.076 Sum_probs=67.9
Q ss_pred CCeehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC------C------------------c--
Q 043102 398 VREVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN------D------------------R-- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D------------------~-- 444 (525)
..+||||| ++.++++ .+++|+|+|+|+++++.|+++++..++.++ | .
T Consensus 66 ~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~ 145 (254)
T 2h00_A 66 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCM 145 (254)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEE
T ss_pred CCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEE
Confidence 34999999 6677765 379999999999999999999987766432 2 1
Q ss_pred ------ccCc-------------ccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhh--cc-cCCCCCCC
Q 043102 445 ------SFGH-------------EYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKE--YI-FPGGCLPS 502 (525)
Q Consensus 445 ------~vg~-------------~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~k--YI-FPGg~LPs 502 (525)
+.+. .....++.+++++|||||.+.+.... ... ...++.. ++ +..+..++
T Consensus 146 ~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~-----~~~---~~~~l~~~g~~~~~~~~~~~ 217 (254)
T 2h00_A 146 CNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRI-----IHD---SLQLKKRLRWYSCMLGKKCS 217 (254)
T ss_dssp ECCCCC-------------------------CTTTTHHHHTHHHHHHHH-----HHH---HHHHGGGBSCEEEEESSTTS
T ss_pred ECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHH-----HHH---HHhcccceEEEEECCCChhH
Confidence 0010 01124678899999999988653211 110 1111111 11 11234566
Q ss_pred HHHHHHHHHhcCCcEEE
Q 043102 503 LSRITSAMSAASRLWYN 519 (525)
Q Consensus 503 l~~i~~~~~~a~gl~V~ 519 (525)
+.++.+.++++ ||+.+
T Consensus 218 ~~~~~~~l~~~-Gf~~v 233 (254)
T 2h00_A 218 LAPLKEELRIQ-GVPKV 233 (254)
T ss_dssp HHHHHHHHHHT-TCSEE
T ss_pred HHHHHHHHHHc-CCCce
Confidence 78888889885 88644
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.031 Score=59.58 Aligned_cols=60 Identities=10% Similarity=0.091 Sum_probs=44.4
Q ss_pred cEEEEeCCCceEeCCEEEEecChHHHHHh----------h--cCCCCHHHHhhccCCc-----eeEeccCCCCCCCC
Q 043102 112 SCTVVCGDGSREFYNSCVMALHAPDALKI----------L--GNQATFDETRTGGAFH-----DIFLHCDKNSMPQN 171 (525)
Q Consensus 112 gv~v~~~~g~~e~fD~VV~A~hadqAL~l----------L--~~~~t~~E~~iLg~f~-----~~vlHtD~s~mP~~ 171 (525)
+|.|.+.+|+...+|+||+|++.....+. + ....+...++.+..+. .+++.-|..+.+..
T Consensus 233 ~v~v~~~~g~~~~ad~VI~t~p~~~l~~~~~~~~~~~~~i~f~P~Lp~~~~~ai~~~~~~~~~Kv~l~f~~~fW~~~ 309 (516)
T 1rsg_A 233 NVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNE 309 (516)
T ss_dssp CEEEEETTSCEEEEEEEEECCCHHHHHGGGSSCSCSTTCCEEESCCCHHHHHHTTSSCCCCCEEEEEEESSCCSCCS
T ss_pred eEEEEECCCcEEECCEEEECCCHHHhhhccccccccccceEecCCCCHHHHHHHHhCCCCcceEEEEEeCCCCCCCC
Confidence 68899999988899999999998866532 1 1123455566777776 88888888888754
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.058 Score=55.45 Aligned_cols=56 Identities=16% Similarity=0.089 Sum_probs=36.7
Q ss_pred cEEEEeCCCceEeCCEEEEecChHHHHHhh-cCCCCHHHHhhccCCc-----eeEeccCCCC
Q 043102 112 SCTVVCGDGSREFYNSCVMALHAPDALKIL-GNQATFDETRTGGAFH-----DIFLHCDKNS 167 (525)
Q Consensus 112 gv~v~~~~g~~e~fD~VV~A~hadqAL~lL-~~~~t~~E~~iLg~f~-----~~vlHtD~s~ 167 (525)
+|.|.+.+|.+..+|+||+|++.....++. .........+.++... .+.++-++++
T Consensus 235 ~v~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~~~~~~~~kv~~~~~~~~ 296 (431)
T 3k7m_X 235 VVNVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEEGHGGQGLKILIHVRGAE 296 (431)
T ss_dssp SEEEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHHCCCCCEEEEEEEEESCC
T ss_pred eEEEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHhCCCcceEEEEEEECCCC
Confidence 688988888778999999999998766653 2212333333333332 6666666654
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0088 Score=63.28 Aligned_cols=73 Identities=12% Similarity=0.120 Sum_probs=52.8
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC--------------Cc-ccC--cccH-HH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN--------------DR-SFG--HEYM-EE 453 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~--------------D~-~vg--~~~~-~~ 453 (525)
..+|||+| ++.+|+. +.+|+|||+|+++++.|+++++..|+... |. .+. .... +.
T Consensus 291 ~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~~~fD~Vv~dPPr~g~~~~ 369 (425)
T 2jjq_A 291 GEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVKGFDTVIVDPPRAGLHPR 369 (425)
T ss_dssp SSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCCTTCSEEEECCCTTCSCHH
T ss_pred CCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCccCCCEEEEcCCccchHHH
Confidence 35899999 7788875 88999999999999999999987665411 22 111 1112 34
Q ss_pred HHHHHHhccCCCcEEEEEE
Q 043102 454 FFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 454 ~f~~i~r~LkpGG~~viq~ 472 (525)
+++.+. .|+|||.+++..
T Consensus 370 ~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 370 LVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp HHHHHH-HHCCSEEEEEES
T ss_pred HHHHHH-hcCCCcEEEEEC
Confidence 666665 599999998853
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0078 Score=62.71 Aligned_cols=75 Identities=12% Similarity=0.004 Sum_probs=58.0
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHc---------------CCCCC-----Cc------
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEA---------------DLERN-----DR------ 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~---------------gl~d~-----D~------ 444 (525)
..+|||+| ++.+|++. +.+|+++|+|++.++.|+++++.. |+++- |+
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 34899999 78888874 469999999999999999999887 76522 33
Q ss_pred --------ccCc-ccHHHHHHHHHhccCCCcEEEEEE
Q 043102 445 --------SFGH-EYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 445 --------~vg~-~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.+.. .....+++.+.+.|||||++++..
T Consensus 128 ~~~~fD~I~lDP~~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 128 RHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp STTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCCEEEeCCCCCHHHHHHHHHHhcCCCCEEEEEe
Confidence 1111 123689999999999999887754
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.011 Score=59.17 Aligned_cols=42 Identities=12% Similarity=0.137 Sum_probs=36.4
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCC
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADL 439 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl 439 (525)
+..+||||| +..++++ +++|+|||+|+++++.|+++++..++
T Consensus 42 ~~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~~~a~~~~~~~~~ 89 (299)
T 2h1r_A 42 SSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISEVKKRCLYEGY 89 (299)
T ss_dssp TTCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred CcCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 345999999 7788875 89999999999999999999877665
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.003 Score=57.86 Aligned_cols=23 Identities=9% Similarity=0.249 Sum_probs=20.0
Q ss_pred HHHHHHHHhccCCCcEEEEEEec
Q 043102 452 EEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
..+++++.++|||||++++....
T Consensus 125 ~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 125 LTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp HHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHHHHHHHHHhcCCCEEEEEecC
Confidence 47899999999999999987553
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.011 Score=60.24 Aligned_cols=74 Identities=11% Similarity=0.149 Sum_probs=53.7
Q ss_pred Ceehhhc------HHHHHHhcC------CEEEEEcCChHHHHHHHHHHHHcCCCCC----C-----------ccc-----
Q 043102 399 REVIFLG------TIEVVKRTG------CKYTGITLAEKQLKYAGIKVKEADLERN----D-----------RSF----- 446 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G------~~VtGIdlS~eql~~Ar~r~~~~gl~d~----D-----------~~v----- 446 (525)
.+|||+| ++.++++.. .+|+|+|+|+++++.|+.++...|+... | ..+
T Consensus 132 ~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~NPPf 211 (344)
T 2f8l_A 132 VSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDLPV 211 (344)
T ss_dssp EEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEECCC
T ss_pred CEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEECCCC
Confidence 3999999 555665421 7999999999999999999887665222 2 111
Q ss_pred C------------------cccH-HHHHHHHHhccCCCcEEEEEE
Q 043102 447 G------------------HEYM-EEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 447 g------------------~~~~-~~~f~~i~r~LkpGG~~viq~ 472 (525)
| ..+. ..+++.+.+.|||||++++-.
T Consensus 212 g~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~ 256 (344)
T 2f8l_A 212 GYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 256 (344)
T ss_dssp SEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence 1 1112 368999999999999998754
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.014 Score=61.11 Aligned_cols=58 Identities=12% Similarity=0.128 Sum_probs=43.6
Q ss_pred CEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc----------------ccC-----cccHHHHHHHHHhccCC--C
Q 043102 415 CKYTGITLAEKQLKYAGIKVKEADLERN------DR----------------SFG-----HEYMEEFFGCCESLIAK--D 465 (525)
Q Consensus 415 ~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~----------------~vg-----~~~~~~~f~~i~r~Lkp--G 465 (525)
.+|+|+|+|+++++.|+++++.+|+.+. |. -.| .+....+++.+.+.||+ |
T Consensus 264 ~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g 343 (393)
T 3k0b_A 264 LNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPT 343 (393)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCC
Confidence 5699999999999999999999998764 32 112 13456677777777776 8
Q ss_pred cEEEEEE
Q 043102 466 GLFVLQF 472 (525)
Q Consensus 466 G~~viq~ 472 (525)
|.+++-+
T Consensus 344 ~~~~iit 350 (393)
T 3k0b_A 344 WSVYVLT 350 (393)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 8887743
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0022 Score=56.72 Aligned_cols=77 Identities=19% Similarity=0.248 Sum_probs=48.6
Q ss_pred CCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcC-------------CCCC--Cc--------cc
Q 043102 398 VREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEAD-------------LERN--DR--------SF 446 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~g-------------l~d~--D~--------~v 446 (525)
..+|||+| +..+++.. +++|+|+|+|+ +++..+-.+.... +.+. |. +.
T Consensus 23 ~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~ 101 (180)
T 1ej0_A 23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMS 101 (180)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCC
T ss_pred CCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccccCcEEEEEcccccchhhhhhhccCCCCceeEEEECCCcccc
Confidence 34999999 67777764 58999999998 6543111100001 1111 33 11
Q ss_pred Ccc---c------HHHHHHHHHhccCCCcEEEEEEecC
Q 043102 447 GHE---Y------MEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 447 g~~---~------~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
+.. . ...+++++.++|||||++++.....
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 102 GTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred CCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 111 1 1689999999999999999876543
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.087 Score=55.44 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=27.3
Q ss_pred CCCeEEeccCCC--CCCchhhhchHHHHHhhhc
Q 043102 237 RRGIWFRGAYQG--YGFHEDGLKDLSINSCMTY 267 (525)
Q Consensus 237 ~~~~~fcGay~g--~GfHEdg~~Sgl~aA~~ll 267 (525)
.++++|||.++. +|+-|+|+.||++||++++
T Consensus 449 ~~~l~fAGe~t~~~~g~~~GAi~SG~raA~~i~ 481 (498)
T 2iid_A 449 QGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVN 481 (498)
T ss_dssp BTTEEECSGGGSSSSSCHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcccccCCcCHHHHHHHHHHHHHHHH
Confidence 468999999983 6888999999999999984
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.11 Score=57.53 Aligned_cols=32 Identities=9% Similarity=-0.101 Sum_probs=28.0
Q ss_pred CCCCeEEeccCCC---CCCchhhhchHHHHHhhhc
Q 043102 236 GRRGIWFRGAYQG---YGFHEDGLKDLSINSCMTY 267 (525)
Q Consensus 236 G~~~~~fcGay~g---~GfHEdg~~Sgl~aA~~ll 267 (525)
+.++|+|||.++. +|+-|+|+.||++||++++
T Consensus 621 ~~grl~FAGe~ts~~~~g~v~GAi~SG~raA~~i~ 655 (662)
T 2z3y_A 621 PIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIA 655 (662)
T ss_dssp CCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeccccCCCCcCHHHHHHHHHHHHHHHH
Confidence 3479999999985 6899999999999999874
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.011 Score=58.52 Aligned_cols=73 Identities=12% Similarity=0.032 Sum_probs=51.1
Q ss_pred Ceehhhc----HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc--------ccCcccH
Q 043102 399 REVIFLG----TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR--------SFGHEYM 451 (525)
Q Consensus 399 ~rVLDIG----a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~--------~vg~~~~ 451 (525)
.+||||| -+.++-..+.+|+|+|||+.+++.|++++...|...+ |. ++.....
T Consensus 107 ~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~LE~q~~ 186 (253)
T 3frh_A 107 RRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPLLEREQA 186 (253)
T ss_dssp SEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHHHHHHST
T ss_pred CeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHHhhhhch
Confidence 4999999 2223222578999999999999999999887775432 22 1112223
Q ss_pred HHHHHHHHhccCCCcEEEEEE
Q 043102 452 EEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~ 472 (525)
...+ ++.+.|+++|.++--.
T Consensus 187 ~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 187 GSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp THHH-HHHHHCBCSEEEEEEE
T ss_pred hhHH-HHHHHhcCCCEEEEcC
Confidence 3445 7788999999887654
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.013 Score=54.04 Aligned_cols=72 Identities=14% Similarity=0.091 Sum_probs=47.1
Q ss_pred CCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcC--------CCCC-Cc--------ccCcccHH
Q 043102 397 KVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEAD--------LERN-DR--------SFGHEYME 452 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~g--------l~d~-D~--------~vg~~~~~ 452 (525)
+..+|||+| ++.+++. |+ +|+|||+|+++++.|+++++... +... |. +.......
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~~~~~~ 129 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPFGSVVKHSDR 129 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC-------CH
T ss_pred CCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCCCCeeEEEECCCchhccCchhH
Confidence 345999999 6777775 65 79999999999999999864110 1111 33 11112235
Q ss_pred HHHHHHHhccCCCcEEEEE
Q 043102 453 EFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq 471 (525)
.+++++.++| |+.++++
T Consensus 130 ~~l~~~~~~~--g~~~~~~ 146 (200)
T 1ne2_A 130 AFIDKAFETS--MWIYSIG 146 (200)
T ss_dssp HHHHHHHHHE--EEEEEEE
T ss_pred HHHHHHHHhc--CcEEEEE
Confidence 7899999998 5544444
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.025 Score=57.11 Aligned_cols=75 Identities=19% Similarity=0.359 Sum_probs=55.6
Q ss_pred eehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHHHHH--cC-CCCC-------Cc------------------
Q 043102 400 EVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIKVKE--AD-LERN-------DR------------------ 444 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r~~~--~g-l~d~-------D~------------------ 444 (525)
+||=|| +.++++..+ .+|+.|+|+++.++.|++.+.+ .+ +++. |+
T Consensus 86 ~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi~D~ 165 (294)
T 3o4f_A 86 HVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDC 165 (294)
T ss_dssp EEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEEESC
T ss_pred eEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEEEeC
Confidence 899999 667777544 6999999999999999998754 22 2222 22
Q ss_pred --ccCcc---cHHHHHHHHHhccCCCcEEEEEEec
Q 043102 445 --SFGHE---YMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 445 --~vg~~---~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
..|.. +-.+|++.|.+.|+|||+++.|.-+
T Consensus 166 ~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~s 200 (294)
T 3o4f_A 166 TDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGV 200 (294)
T ss_dssp CCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEE
T ss_pred CCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCC
Confidence 11211 2368999999999999999999754
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=94.61 E-value=0.038 Score=53.55 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=33.6
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE 436 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~ 436 (525)
++.+||||| +..++++ +++|+|||+|+++++.|+++++.
T Consensus 30 ~~~~VLDiG~G~G~lt~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~ 74 (244)
T 1qam_A 30 EHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVD 74 (244)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTT
T ss_pred CCCEEEEEeCCchHHHHHHHHc-CCeEEEEECCHHHHHHHHHhhcc
Confidence 345999999 7788876 79999999999999999998753
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.018 Score=57.98 Aligned_cols=72 Identities=13% Similarity=0.178 Sum_probs=47.2
Q ss_pred CCeehhhcH----------HHHHHhc--CCEEEEEcCChHHHHHHHHHHHH---c-----CCCCC-Cc-------cc-C-
Q 043102 398 VREVIFLGT----------IEVVKRT--GCKYTGITLAEKQLKYAGIKVKE---A-----DLERN-DR-------SF-G- 447 (525)
Q Consensus 398 ~~rVLDIGa----------~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~---~-----gl~d~-D~-------~v-g- 447 (525)
..+|||||+ ..+++.. +++|+|||+|++ ++ +++- . .+... |. +. |
T Consensus 64 g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-v~----~v~~~i~gD~~~~~~~~~fD~Vvsn~~~~~~g~ 138 (290)
T 2xyq_A 64 NMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-VS----DADSTLIGDCATVHTANKWDLIISDMYDPRTKH 138 (290)
T ss_dssp TCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-BC----SSSEEEESCGGGCCCSSCEEEEEECCCCCC---
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-CC----CCEEEEECccccCCccCcccEEEEcCCcccccc
Confidence 459999996 6677664 489999999998 21 1111 0 11111 33 11 1
Q ss_pred --------cccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 448 --------HEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 448 --------~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
...++..++++.++|||||+|++..+.
T Consensus 139 ~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~ 173 (290)
T 2xyq_A 139 VTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE 173 (290)
T ss_dssp CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred ccccccchHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 123568999999999999999996543
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.025 Score=56.79 Aligned_cols=76 Identities=8% Similarity=-0.075 Sum_probs=55.8
Q ss_pred Ceehhhc------HHHHHHh------cCCEEEEEcCChH--------------------------HHHHHHHHHHHcCCC
Q 043102 399 REVIFLG------TIEVVKR------TGCKYTGITLAEK--------------------------QLKYAGIKVKEADLE 440 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~------~G~~VtGIdlS~e--------------------------ql~~Ar~r~~~~gl~ 440 (525)
++||||| ++.+|+- .+.+|+++|..+. .++.|++++++.|+.
T Consensus 108 g~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl~ 187 (282)
T 2wk1_A 108 GDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDLL 187 (282)
T ss_dssp CEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTCC
T ss_pred CcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCCC
Confidence 4899999 5555432 2689999996421 467899999999984
Q ss_pred -CC------Cc---------------ccC--c-ccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 441 -RN------DR---------------SFG--H-EYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 441 -d~------D~---------------~vg--~-~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
++ |+ ++. . +.+..+|+.+...|+|||.++++.+.
T Consensus 188 ~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv~DD~~ 246 (282)
T 2wk1_A 188 DEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIVDDYM 246 (282)
T ss_dssp STTEEEEESCHHHHSTTCCCCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEEESSCT
T ss_pred cCceEEEEeCHHHHHhhCCCCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEEEcCCC
Confidence 55 21 222 2 34568899999999999999998873
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.059 Score=56.17 Aligned_cols=72 Identities=13% Similarity=0.213 Sum_probs=51.6
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCCcc-hh----------c-------c----cCchhHHhhcccCCCCCCCHHHH
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPDER-YN----------E-------F----RLSSDFMKEYIFPGGCLPSLSRI 506 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~-~~----------~-------~----~~~~~fi~kYIFPGg~LPsl~~i 506 (525)
+++..|++..++.|||||++++......+.. +. . + ....+++..+-.|- +.||++|+
T Consensus 202 ~D~~~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~-y~ps~~E~ 280 (374)
T 3b5i_A 202 ADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPV-YAPSLQDF 280 (374)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCB-CCCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccc-cCCCHHHH
Confidence 3789999999999999999999988775421 10 0 0 00123333334454 78999999
Q ss_pred HHHHHhcCCcEEEEE
Q 043102 507 TSAMSAASRLWYNLA 521 (525)
Q Consensus 507 ~~~~~~a~gl~V~~~ 521 (525)
...+++.+||+|+..
T Consensus 281 ~~~l~~~~~F~I~~l 295 (374)
T 3b5i_A 281 KEVVDANGSFAIDKL 295 (374)
T ss_dssp HHHHHHHCSEEEEEE
T ss_pred HHHHHhcCCcEEEEE
Confidence 999997679999765
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.063 Score=59.66 Aligned_cols=69 Identities=14% Similarity=0.223 Sum_probs=53.9
Q ss_pred eehhhc---------HHHHHHhcCC--EEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc----ccC
Q 043102 400 EVIFLG---------TIEVVKRTGC--KYTGITLAEKQLKYAGIKVKEADLERN-----------------DR----SFG 447 (525)
Q Consensus 400 rVLDIG---------a~~lA~~~G~--~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~----~vg 447 (525)
.|||+| ++.++++.+. +|.+|+-|+ +...|++.+++.|++++ |- -+|
T Consensus 360 vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG 438 (637)
T 4gqb_A 360 VLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLG 438 (637)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCB
T ss_pred EEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCc
Confidence 799999 6777776554 789999996 78899999999888776 22 112
Q ss_pred ----cccHHHHHHHHHhccCCCcEEE
Q 043102 448 ----HEYMEEFFGCCESLIAKDGLFV 469 (525)
Q Consensus 448 ----~~~~~~~f~~i~r~LkpGG~~v 469 (525)
.+...+.+....|.|||||+++
T Consensus 439 ~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 439 SFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp TTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred ccccccCCHHHHHHHHHhcCCCcEEc
Confidence 3456788888999999999875
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=94.20 E-value=0.22 Score=57.09 Aligned_cols=32 Identities=9% Similarity=-0.101 Sum_probs=28.0
Q ss_pred CCCCeEEeccCCC---CCCchhhhchHHHHHhhhc
Q 043102 236 GRRGIWFRGAYQG---YGFHEDGLKDLSINSCMTY 267 (525)
Q Consensus 236 G~~~~~fcGay~g---~GfHEdg~~Sgl~aA~~ll 267 (525)
+.++|+|||.++. +|+-|+|+.||++||++++
T Consensus 792 ~~grL~FAGE~Ts~~~~gtveGAi~SG~RAA~~Il 826 (852)
T 2xag_A 792 PIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIA 826 (852)
T ss_dssp CCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEehhHhCCCCcCHHHHHHHHHHHHHHHH
Confidence 3479999999984 6899999999999999874
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=94.11 E-value=0.11 Score=52.39 Aligned_cols=43 Identities=19% Similarity=0.064 Sum_probs=36.8
Q ss_pred CCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCC
Q 043102 398 VREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLE 440 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~ 440 (525)
..+|||+| ++.+|+.. +.+|+++|+|+++++.++++++..|+.
T Consensus 103 g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~ 153 (309)
T 2b9e_A 103 GSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS 153 (309)
T ss_dssp TCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 45999999 77788753 479999999999999999999988863
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.0049 Score=61.45 Aligned_cols=74 Identities=11% Similarity=0.053 Sum_probs=46.0
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHH-H-------------HcC---CCCC--Cc---cc---
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKV-K-------------EAD---LERN--DR---SF--- 446 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~-~-------------~~g---l~d~--D~---~v--- 446 (525)
..+||||| +..++++ ++|+|||+|+ |+..|+++. . ... +.+. |. .+
T Consensus 83 g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~~~~ 159 (276)
T 2wa2_A 83 KGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDIGES 159 (276)
T ss_dssp CEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECCCCC
T ss_pred CCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECCCcC
Confidence 34999999 7788876 7999999998 543332211 0 000 1111 33 11
Q ss_pred -Cccc---H--HHHHHHHHhccCCCc--EEEEEEec
Q 043102 447 -GHEY---M--EEFFGCCESLIAKDG--LFVLQFIS 474 (525)
Q Consensus 447 -g~~~---~--~~~f~~i~r~LkpGG--~~viq~i~ 474 (525)
+... . ...++.+.++||||| .|++....
T Consensus 160 ~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 160 NPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred CCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 1111 1 137899999999999 99996655
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=94.11 E-value=0.035 Score=58.61 Aligned_cols=74 Identities=9% Similarity=0.097 Sum_probs=53.4
Q ss_pred Ceehhhc------HHHHHHh--------------cCCEEEEEcCChHHHHHHHHHHHHcCCCC---C----Cc-------
Q 043102 399 REVIFLG------TIEVVKR--------------TGCKYTGITLAEKQLKYAGIKVKEADLER---N----DR------- 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~--------------~G~~VtGIdlS~eql~~Ar~r~~~~gl~d---~----D~------- 444 (525)
.+|||.| .+.+++. .+.+++|+|+++.+++.|+.++...|+.. . |.
T Consensus 173 ~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~~~ 252 (445)
T 2okc_A 173 ETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEPST 252 (445)
T ss_dssp CCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCCSS
T ss_pred CEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcccC
Confidence 3899999 4444442 24789999999999999999988878742 1 21
Q ss_pred ----cc-----Cc------c------------cHHHHHHHHHhccCCCcEEEEEE
Q 043102 445 ----SF-----GH------E------------YMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 445 ----~v-----g~------~------------~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.+ +. . ....|++.+.++|||||++++-.
T Consensus 253 ~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~ 307 (445)
T 2okc_A 253 LVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 307 (445)
T ss_dssp CEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEE
Confidence 00 10 0 02478999999999999998754
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=94.05 E-value=0.065 Score=56.14 Aligned_cols=74 Identities=12% Similarity=0.074 Sum_probs=57.7
Q ss_pred Ceehhhc------HHHHHHhc-C-CEEEEEcCChHHHHHHHHHHHHcCCCC--C-----Cc----c-----------cCc
Q 043102 399 REVIFLG------TIEVVKRT-G-CKYTGITLAEKQLKYAGIKVKEADLER--N-----DR----S-----------FGH 448 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G-~~VtGIdlS~eql~~Ar~r~~~~gl~d--~-----D~----~-----------vg~ 448 (525)
.+|||++ ++++|++. | .+|+++|+|++.++.|+++++..|+++ - |+ . +..
T Consensus 54 ~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lDP 133 (392)
T 3axs_A 54 VKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLDP 133 (392)
T ss_dssp EEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEECC
T ss_pred CEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEECC
Confidence 4899998 78888763 5 589999999999999999999988865 1 43 1 011
Q ss_pred -ccHHHHHHHHHhccCCCcEEEEEE
Q 043102 449 -EYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 449 -~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.....+++.+.++|||||++++..
T Consensus 134 ~g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 134 FGTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence 112579999999999999887755
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.088 Score=54.87 Aligned_cols=58 Identities=10% Similarity=0.088 Sum_probs=45.1
Q ss_pred CEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc--------------------ccC-cccHHHHHHHHHhccCC--C
Q 043102 415 CKYTGITLAEKQLKYAGIKVKEADLERN------DR--------------------SFG-HEYMEEFFGCCESLIAK--D 465 (525)
Q Consensus 415 ~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~--------------------~vg-~~~~~~~f~~i~r~Lkp--G 465 (525)
.+|+|+|+|+++++.|+++++.+|+++. |. .+| .+....+++.+.+.||+ |
T Consensus 257 ~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g 336 (384)
T 3ldg_A 257 LDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKT 336 (384)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTT
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCC
Confidence 5699999999999999999999998764 22 112 24567788888888877 8
Q ss_pred cEEEEEE
Q 043102 466 GLFVLQF 472 (525)
Q Consensus 466 G~~viq~ 472 (525)
|.+++-+
T Consensus 337 ~~~~iit 343 (384)
T 3ldg_A 337 WSQFILT 343 (384)
T ss_dssp SEEEEEE
T ss_pred cEEEEEE
Confidence 9887754
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=93.80 E-value=0.038 Score=54.35 Aligned_cols=39 Identities=10% Similarity=0.145 Sum_probs=34.1
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE 436 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~ 436 (525)
++.+||||| +..++++ +++|+|||+|+++++.|+++++.
T Consensus 29 ~~~~VLEIG~G~G~lt~~La~~-~~~V~avEid~~~~~~~~~~~~~ 73 (255)
T 3tqs_A 29 KTDTLVEIGPGRGALTDYLLTE-CDNLALVEIDRDLVAFLQKKYNQ 73 (255)
T ss_dssp TTCEEEEECCTTTTTHHHHTTT-SSEEEEEECCHHHHHHHHHHHTT
T ss_pred CcCEEEEEcccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHhh
Confidence 345999999 7888875 79999999999999999999864
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.0054 Score=60.75 Aligned_cols=73 Identities=15% Similarity=0.043 Sum_probs=45.4
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHH----------HH----HcC---CCCC--Cc---c----c
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIK----------VK----EAD---LERN--DR---S----F 446 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r----------~~----~~g---l~d~--D~---~----v 446 (525)
.+||||| +..++++ ++|+|||+|+ |+..|+++ +. ... +.+. |. . .
T Consensus 76 ~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~~~~~ 152 (265)
T 2oxt_A 76 GRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDVGESS 152 (265)
T ss_dssp EEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCCC
T ss_pred CEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeCcccC
Confidence 4999999 7778875 7999999998 53322211 00 001 1111 33 1 1
Q ss_pred Cccc---H--HHHHHHHHhccCCCc--EEEEEEec
Q 043102 447 GHEY---M--EEFFGCCESLIAKDG--LFVLQFIS 474 (525)
Q Consensus 447 g~~~---~--~~~f~~i~r~LkpGG--~~viq~i~ 474 (525)
+... . ...++.+.++||||| .|++....
T Consensus 153 ~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 153 PKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 1111 1 137899999999999 99997665
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=0.011 Score=59.72 Aligned_cols=75 Identities=9% Similarity=0.057 Sum_probs=45.7
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcC----ChHHHHHHH-HHH--HH----cCCCC-----C--Cc-------ccC
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITL----AEKQLKYAG-IKV--KE----ADLER-----N--DR-------SFG 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdl----S~eql~~Ar-~r~--~~----~gl~d-----~--D~-------~vg 447 (525)
.+||||| +..+|++ .+|+|||+ |+++++.++ ++. .. .+++. . |. ++|
T Consensus 84 ~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~~~~~g 161 (305)
T 2p41_A 84 GKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDIGESSP 161 (305)
T ss_dssp EEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECCCCCCS
T ss_pred CEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECCccccC
Confidence 4999999 7788876 58999999 665543221 111 00 11111 1 33 123
Q ss_pred ccc--HH---HHHHHHHhccCCCcEEEEEEecC
Q 043102 448 HEY--ME---EFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 448 ~~~--~~---~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
... .. ..++.+.++|||||.|+++.+..
T Consensus 162 ~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 162 NPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred cchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 211 11 47889999999999999976543
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=93.47 E-value=0.059 Score=56.11 Aligned_cols=58 Identities=16% Similarity=0.250 Sum_probs=43.8
Q ss_pred CEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc----------------ccC-----cccHHHHHHHHHhccCC--C
Q 043102 415 CKYTGITLAEKQLKYAGIKVKEADLERN------DR----------------SFG-----HEYMEEFFGCCESLIAK--D 465 (525)
Q Consensus 415 ~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~----------------~vg-----~~~~~~~f~~i~r~Lkp--G 465 (525)
.+|+|+|+|+++++.|+++++.+|+++. |. -.| .+....+++++.+.||+ |
T Consensus 258 ~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g 337 (385)
T 3ldu_A 258 FKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKN 337 (385)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBS
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCC
Confidence 5799999999999999999999988643 22 112 23566778888888877 8
Q ss_pred cEEEEEE
Q 043102 466 GLFVLQF 472 (525)
Q Consensus 466 G~~viq~ 472 (525)
|.+++-+
T Consensus 338 ~~~~iit 344 (385)
T 3ldu_A 338 WSYYLIT 344 (385)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 8887643
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=93.47 E-value=0.071 Score=56.25 Aligned_cols=41 Identities=12% Similarity=0.011 Sum_probs=36.5
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHc--CC
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEA--DL 439 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~--gl 439 (525)
..+|||+| ++.+|+. +++|+|||+|+++++.|+++++.. |+
T Consensus 94 g~~VLDLgcG~G~~al~LA~~-g~~V~~VD~s~~~l~~Ar~N~~~~~~gl 142 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSK-ASQGIYIERNDETAVAARHNIPLLLNEG 142 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHSCTT
T ss_pred CCEEEEeCCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHhHHHhccCC
Confidence 45999999 7778875 899999999999999999999887 76
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=93.24 E-value=0.059 Score=54.37 Aligned_cols=41 Identities=22% Similarity=0.396 Sum_probs=35.9
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcC
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEAD 438 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~g 438 (525)
+.+|||+| ++.++++. +++|+|||+|+++++.|+++++..|
T Consensus 27 g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g 74 (301)
T 1m6y_A 27 EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS 74 (301)
T ss_dssp TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT
T ss_pred CCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence 45999999 78888875 6899999999999999999987765
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=93.17 E-value=0.086 Score=55.16 Aligned_cols=72 Identities=15% Similarity=0.224 Sum_probs=51.3
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCCc--c------hhcc--------cCchhHHhhcccCCCCCCCHHHHHHHHHh
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPDE--R------YNEF--------RLSSDFMKEYIFPGGCLPSLSRITSAMSA 512 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~~--~------~~~~--------~~~~~fi~kYIFPGg~LPsl~~i~~~~~~ 512 (525)
+++..|++..++.|||||++++...+.+.. . .... .-..+-+..+-.|- +.||.+|+...+++
T Consensus 202 ~D~~~FL~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~-y~ps~~E~~~~le~ 280 (384)
T 2efj_A 202 KDFTTFLRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPI-YAPSTEEVKRIVEE 280 (384)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSB-CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcc-cCCCHHHHHHHHHH
Confidence 368899999999999999999998877653 1 1000 00111223344455 88999999999999
Q ss_pred cCCcEEEEE
Q 043102 513 ASRLWYNLA 521 (525)
Q Consensus 513 a~gl~V~~~ 521 (525)
.++|+|+..
T Consensus 281 ~g~F~i~~l 289 (384)
T 2efj_A 281 EGSFEILYL 289 (384)
T ss_dssp HCSEEEEEE
T ss_pred cCCceEEEE
Confidence 878888765
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=93.13 E-value=0.033 Score=54.87 Aligned_cols=40 Identities=13% Similarity=0.057 Sum_probs=34.7
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCCh-------HHHHHHHHHHHHcCC
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAE-------KQLKYAGIKVKEADL 439 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~-------eql~~Ar~r~~~~gl 439 (525)
.+|||+| ++.+|+. |++|+|+|+|+ ++++.|+++++..++
T Consensus 85 ~~VLDlgcG~G~~a~~lA~~-g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~ 137 (258)
T 2r6z_A 85 PTVWDATAGLGRDSFVLASL-GLTVTAFEQHPAVACLLSDGIRRALLNPETQDT 137 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHT-TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred CeEEEeeCccCHHHHHHHHh-CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCC
Confidence 4899999 8888885 89999999999 999999988766554
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=92.91 E-value=0.084 Score=53.15 Aligned_cols=39 Identities=26% Similarity=0.164 Sum_probs=34.2
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE 436 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~ 436 (525)
++.+||||| +..++++ +.+|+|||+|+++++.|+++++.
T Consensus 50 ~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~ 94 (295)
T 3gru_A 50 KDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKEL 94 (295)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHH
T ss_pred CcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhcc
Confidence 445999999 7788876 89999999999999999999863
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=92.73 E-value=0.089 Score=55.39 Aligned_cols=42 Identities=12% Similarity=0.118 Sum_probs=37.4
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE 440 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~ 440 (525)
..+|||+| ++.+|++ +++|+|+|+|+++++.|+++++..|+.
T Consensus 287 ~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~ 334 (433)
T 1uwv_A 287 EDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ 334 (433)
T ss_dssp TCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred CCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 35999999 8888886 899999999999999999999887764
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=92.19 E-value=0.14 Score=53.15 Aligned_cols=72 Identities=15% Similarity=0.296 Sum_probs=50.2
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCCcc---------hhccc-CchhH----------HhhcccCCCCCCCHHHHHH
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPDER---------YNEFR-LSSDF----------MKEYIFPGGCLPSLSRITS 508 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~---------~~~~~-~~~~f----------i~kYIFPGg~LPsl~~i~~ 508 (525)
+++..|++..++.|+|||++++...+.++.. ++... ...+. +..+..|- +.||.+|+..
T Consensus 186 ~D~~~FL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~-y~ps~~E~~~ 264 (359)
T 1m6e_X 186 EDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQ-YTPSPTEVEA 264 (359)
T ss_dssp HHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCC-BCCCSHHHHH
T ss_pred HHHHHHHHHHHHHhcCCceEEEEEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCc-cCCCHHHHHH
Confidence 4688899999999999999999988876531 11000 00111 11234454 8899999999
Q ss_pred HHHhcCCcEEEEE
Q 043102 509 AMSAASRLWYNLA 521 (525)
Q Consensus 509 ~~~~a~gl~V~~~ 521 (525)
.+++.++|+|+..
T Consensus 265 ~ie~~G~F~i~~~ 277 (359)
T 1m6e_X 265 EILKEGSFLIDHI 277 (359)
T ss_dssp HHHHTTTBCCEEE
T ss_pred HHHHcCCceEEEE
Confidence 9999877787654
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=91.98 E-value=0.072 Score=52.93 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=33.4
Q ss_pred cCCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHH
Q 043102 396 FKVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVK 435 (525)
Q Consensus 396 f~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~ 435 (525)
-++ +||||| +..++++ +++|++||+|+++++.+++++.
T Consensus 46 ~~~-~VLEIG~G~G~lt~~L~~~-~~~V~avEid~~~~~~l~~~~~ 89 (271)
T 3fut_A 46 FTG-PVFEVGPGLGALTRALLEA-GAEVTAIEKDLRLRPVLEETLS 89 (271)
T ss_dssp CCS-CEEEECCTTSHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTT
T ss_pred CCC-eEEEEeCchHHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcC
Confidence 345 899999 7788875 8999999999999999999875
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=91.39 E-value=0.099 Score=52.10 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=31.4
Q ss_pred CCCeehhhc------HHHHHHhcCCE----EEEEcCChHHHHHHHHHH
Q 043102 397 KVREVIFLG------TIEVVKRTGCK----YTGITLAEKQLKYAGIKV 434 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~----VtGIdlS~eql~~Ar~r~ 434 (525)
++.+||||| +..++++ +.+ |+|||+|+++++.|+++.
T Consensus 42 ~~~~VLEIG~G~G~lt~~La~~-~~~~~~~V~avDid~~~l~~a~~~~ 88 (279)
T 3uzu_A 42 RGERMVEIGPGLGALTGPVIAR-LATPGSPLHAVELDRDLIGRLEQRF 88 (279)
T ss_dssp TTCEEEEECCTTSTTHHHHHHH-HCBTTBCEEEEECCHHHHHHHHHHH
T ss_pred CcCEEEEEccccHHHHHHHHHh-CCCcCCeEEEEECCHHHHHHHHHhc
Confidence 345999999 7788875 555 999999999999999983
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=91.38 E-value=0.22 Score=52.07 Aligned_cols=76 Identities=18% Similarity=0.254 Sum_probs=54.1
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHc--C-CCCC----------Cc---------------
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEA--D-LERN----------DR--------------- 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~--g-l~d~----------D~--------------- 444 (525)
.+||=|| +.++.+....+|+.|+|+++.++.|++.+... + +++. |+
T Consensus 207 krVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yD 286 (381)
T 3c6k_A 207 KDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFD 286 (381)
T ss_dssp CEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEE
T ss_pred CeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCcee
Confidence 4999999 66777655579999999999999999875321 1 1111 21
Q ss_pred ---------c-----cC---cccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 445 ---------S-----FG---HEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 445 ---------~-----vg---~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
. .+ .-+.++|++.+.+.|+|||+++.|.-+
T Consensus 287 vIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s 333 (381)
T 3c6k_A 287 YVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNC 333 (381)
T ss_dssp EEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 0 01 123468899999999999999999654
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.05 E-value=0.19 Score=51.62 Aligned_cols=41 Identities=7% Similarity=0.151 Sum_probs=36.0
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE 440 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~ 440 (525)
.+|||+| ++.+|+. ..+|+|||+|+++++.|+++++..|+.
T Consensus 215 ~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~ 261 (369)
T 3bt7_A 215 GDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHID 261 (369)
T ss_dssp SEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCC
T ss_pred CEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 4899999 7777874 679999999999999999999988874
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=90.75 E-value=0.079 Score=54.61 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=27.5
Q ss_pred CCeehhhc------HHHHHHh--cCCEEEEEcCChHHHHHH
Q 043102 398 VREVIFLG------TIEVVKR--TGCKYTGITLAEKQLKYA 430 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~--~G~~VtGIdlS~eql~~A 430 (525)
..+|||+| ++.++++ .+++|+|+|+|+++++.|
T Consensus 40 ~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a 80 (421)
T 2ih2_A 40 GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP 80 (421)
T ss_dssp TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC
T ss_pred CCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC
Confidence 34999999 6677765 368999999999999887
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=90.57 E-value=0.1 Score=47.09 Aligned_cols=52 Identities=13% Similarity=0.027 Sum_probs=38.4
Q ss_pred eeeEEEecCCCCCHHHHHHHHHhhhhcCCCCeEEeccCCCCCCchhhhchHHHHHhhh
Q 043102 209 TLLKWSTGPPVPFVAASKASLELGHIQGRRGIWFRGAYQGYGFHEDGLKDLSINSCMT 266 (525)
Q Consensus 209 il~~~~y~HPv~~~~a~~aq~~l~~iqG~~~~~fcGay~g~GfHEdg~~Sgl~aA~~l 266 (525)
...+|.|..|...... -.....++++++||+|+.-+--++|+.||..+|+.|
T Consensus 272 ~~~~w~~a~~~~~~~~------~~~~~~~~~v~l~GDa~~g~gv~~A~~sG~~aA~~I 323 (336)
T 3kkj_A 272 LAHRWLYARPAGAHEW------GALSDADLGIYVCGDWCLSGRVEGAWLSGQEAARRL 323 (336)
T ss_dssp EEEEEEEEEESSCCCC------SSEEETTTTEEECCGGGTTSSHHHHHHHHHHHHHHH
T ss_pred eccceeecccccccCc------cceeeCCCCEEEEecccCCcCHHHHHHHHHHHHHHH
Confidence 4558888877644321 011224679999999987777899999999999988
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=90.28 E-value=0.13 Score=50.19 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=31.1
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHH
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIK 433 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r 433 (525)
++.+||||| +..++++..++|+|||+|+++++.++++
T Consensus 31 ~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~ 73 (249)
T 3ftd_A 31 EGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI 73 (249)
T ss_dssp TTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS
T ss_pred CcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc
Confidence 345999999 6777775238999999999999999987
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=88.71 E-value=0.65 Score=48.61 Aligned_cols=73 Identities=14% Similarity=0.212 Sum_probs=37.0
Q ss_pred HHHHHHHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCceEeCCEEEEecChHHHHH-hhcCCC-CHHHHh
Q 043102 74 MMELFESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGSREFYNSCVMALHAPDALK-ILGNQA-TFDETR 151 (525)
Q Consensus 74 ~~~~~~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~~e~fD~VV~A~hadqAL~-lL~~~~-t~~E~~ 151 (525)
|.+..++.|+++.++..+.+|..++++ -+-|++++|++..+|.||.++++.++++ ||+..+ .....+
T Consensus 227 L~~~~~~~Gg~I~~~~~V~~I~~~~~~-----------~~gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll~~~~~~~~~~~ 295 (501)
T 4dgk_A 227 MIKLFQDLGGEVVLNARVSHMETTGNK-----------IEAVHLEDGRRFLTQAVASNADVVHTYRDLLSQHPAAVKQSN 295 (501)
T ss_dssp HHHHHHHTTCEEECSCCEEEEEEETTE-----------EEEEEETTSCEEECSCEEECCC--------------------
T ss_pred HHHHHHHhCCceeeecceeEEEeeCCe-----------EEEEEecCCcEEEcCEEEECCCHHHHHHHhccccccchhhhh
Confidence 455666778999999888888664321 1236678898899999999999998876 554322 223334
Q ss_pred hccCCc
Q 043102 152 TGGAFH 157 (525)
Q Consensus 152 iLg~f~ 157 (525)
-+..++
T Consensus 296 ~~~~~~ 301 (501)
T 4dgk_A 296 KLQTKR 301 (501)
T ss_dssp ------
T ss_pred hhhccc
Confidence 444444
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=88.35 E-value=0.31 Score=48.01 Aligned_cols=38 Identities=8% Similarity=0.076 Sum_probs=32.3
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHc
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEA 437 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~ 437 (525)
.+|||+| ++.+|++ |++|++||+|++..+.+++.++.+
T Consensus 90 ~~VLDl~~G~G~dal~lA~~-g~~V~~vE~~~~~~~l~~~~l~~a 133 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARG 133 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHH
T ss_pred CEEEEcCCcCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHH
Confidence 4899998 8888986 899999999999988888776543
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=88.29 E-value=0.034 Score=53.58 Aligned_cols=37 Identities=24% Similarity=0.282 Sum_probs=32.5
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVK 435 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~ 435 (525)
..+||||| +..++++ +++|+|||+|++|++.|+++++
T Consensus 30 ~~~VLDiG~G~G~~~~~l~~~-~~~v~~id~~~~~~~~a~~~~~ 72 (245)
T 1yub_A 30 TDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLK 72 (245)
T ss_dssp SEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTT
T ss_pred CCEEEEEeCCCCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHhc
Confidence 34999999 7788876 7999999999999999998864
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=87.98 E-value=0.52 Score=46.81 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=33.2
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHc
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEA 437 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~ 437 (525)
+++.|||++ ++.++ +.|.+++|||+++++++.|++|+++.
T Consensus 235 ~~~~vlD~f~GsGt~~~~a~-~~g~~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 235 VGDVVLDPFAGTGTTLIAAA-RWGRRALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp TTCEEEETTCTTTHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHH-HcCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 345999999 44444 46999999999999999999999764
|
| >2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=87.34 E-value=0.26 Score=45.78 Aligned_cols=31 Identities=10% Similarity=0.159 Sum_probs=28.3
Q ss_pred CCCeEEeccCCC--CCCchhhhchHHHHHhhhc
Q 043102 237 RRGIWFRGAYQG--YGFHEDGLKDLSINSCMTY 267 (525)
Q Consensus 237 ~~~~~fcGay~g--~GfHEdg~~Sgl~aA~~ll 267 (525)
.++|+|||.++. .|+-|+|+.||.+||++++
T Consensus 117 ~grl~FAGe~ts~~~g~~eGAl~SG~raA~~i~ 149 (181)
T 2e1m_C 117 EGPVYFAGEHVSLKHAWIEGAVETAVRAAIAVN 149 (181)
T ss_dssp BTTEEECSGGGTTSTTSHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEHHHcCCccCHHHHHHHHHHHHHHHH
Confidence 468999999987 8899999999999999885
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=86.60 E-value=0.36 Score=47.46 Aligned_cols=20 Identities=15% Similarity=0.318 Sum_probs=18.0
Q ss_pred HHHHHHHHHhccCCCcEEEE
Q 043102 451 MEEFFGCCESLIAKDGLFVL 470 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~vi 470 (525)
.+++|+.+.++|||||+++.
T Consensus 192 ~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 192 TQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp CHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHcCCCcEEEE
Confidence 57899999999999999874
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=86.45 E-value=0.8 Score=47.32 Aligned_cols=40 Identities=10% Similarity=0.007 Sum_probs=33.7
Q ss_pred eehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCC
Q 043102 400 EVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADL 439 (525)
Q Consensus 400 rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl 439 (525)
+|||+. +..+|+.. +..|+++|+|+.-++..+++++..|.
T Consensus 151 ~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~ 197 (359)
T 4fzv_A 151 IVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVP 197 (359)
T ss_dssp EEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSC
T ss_pred EEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhh
Confidence 999998 77777752 34899999999999999999987665
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=85.21 E-value=0.39 Score=43.89 Aligned_cols=30 Identities=10% Similarity=0.055 Sum_probs=26.3
Q ss_pred Ceehhhc-------HHHHHHhcCCEEEEEcCChHHHH
Q 043102 399 REVIFLG-------TIEVVKRTGCKYTGITLAEKQLK 428 (525)
Q Consensus 399 ~rVLDIG-------a~~lA~~~G~~VtGIdlS~eql~ 428 (525)
.+||||| |..||++.|+.|+++|+|+.-++
T Consensus 37 ~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~ 73 (153)
T 2k4m_A 37 TRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG 73 (153)
T ss_dssp SEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT
T ss_pred CcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc
Confidence 4999999 88999867999999999987655
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=84.83 E-value=1.1 Score=50.33 Aligned_cols=27 Identities=11% Similarity=0.206 Sum_probs=25.4
Q ss_pred CEEEEEcCChHHHHHHHHHHHHcCCCC
Q 043102 415 CKYTGITLAEKQLKYAGIKVKEADLER 441 (525)
Q Consensus 415 ~~VtGIdlS~eql~~Ar~r~~~~gl~d 441 (525)
.+|+|+|+|+++++.|+++++.+|+++
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~agv~~ 283 (703)
T 3v97_A 257 SHFYGSDSDARVIQRARTNARLAGIGE 283 (703)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCGG
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCC
Confidence 689999999999999999999999875
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=83.72 E-value=1.1 Score=48.73 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=43.4
Q ss_pred CEEEEEcCChHHHHHHHHHHHHcCCCC------C----Cc-------------cc-----C-c--------------ccH
Q 043102 415 CKYTGITLAEKQLKYAGIKVKEADLER------N----DR-------------SF-----G-H--------------EYM 451 (525)
Q Consensus 415 ~~VtGIdlS~eql~~Ar~r~~~~gl~d------~----D~-------------~v-----g-~--------------~~~ 451 (525)
..++|+|+++.+++.|+.++...|+.. . |. .+ + . ...
T Consensus 212 ~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~ 291 (541)
T 2ar0_A 212 RAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQ 291 (541)
T ss_dssp TSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchH
Confidence 589999999999999999988777763 1 21 11 1 0 112
Q ss_pred HHHHHHHHhccCCCcEEEEEE
Q 043102 452 EEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~ 472 (525)
..|++.+.+.|||||++++-.
T Consensus 292 ~~Fl~~~l~~Lk~gGr~a~V~ 312 (541)
T 2ar0_A 292 LCFMQHIIETLHPGGRAAVVV 312 (541)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEEe
Confidence 379999999999999998753
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=83.41 E-value=1.5 Score=45.27 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=30.6
Q ss_pred CCeehhhc-------HHHHHHhcCC-EEEEEcCChHHHHHHHHH
Q 043102 398 VREVIFLG-------TIEVVKRTGC-KYTGITLAEKQLKYAGIK 433 (525)
Q Consensus 398 ~~rVLDIG-------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r 433 (525)
.++||=+| ++.+|+..|+ +|++++.|++.+++|++.
T Consensus 214 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l 257 (404)
T 3ip1_A 214 GDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL 257 (404)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence 45777777 8888988899 999999999999988764
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=83.01 E-value=0.51 Score=46.09 Aligned_cols=36 Identities=19% Similarity=0.024 Sum_probs=29.6
Q ss_pred CCCeehhhc------HHHHHHhcCCE--EEEEcCChHHHHHHHHHHH
Q 043102 397 KVREVIFLG------TIEVVKRTGCK--YTGITLAEKQLKYAGIKVK 435 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~--VtGIdlS~eql~~Ar~r~~ 435 (525)
++.+||||| +. ++ + +.+ |+|||+|+++++.|+++++
T Consensus 21 ~~~~VLEIG~G~G~lt~-l~-~-~~~~~v~avEid~~~~~~a~~~~~ 64 (252)
T 1qyr_A 21 KGQAMVEIGPGLAALTE-PV-G-ERLDQLTVIELDRDLAARLQTHPF 64 (252)
T ss_dssp TTCCEEEECCTTTTTHH-HH-H-TTCSCEEEECCCHHHHHHHHTCTT
T ss_pred CcCEEEEECCCCcHHHH-hh-h-CCCCeEEEEECCHHHHHHHHHHhc
Confidence 345899999 56 54 3 567 9999999999999999874
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=81.66 E-value=0.56 Score=46.99 Aligned_cols=71 Identities=13% Similarity=0.225 Sum_probs=49.7
Q ss_pred CCeehhhc-------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc---ccCcccHH
Q 043102 398 VREVIFLG-------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR---SFGHEYME 452 (525)
Q Consensus 398 ~~rVLDIG-------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~---~vg~~~~~ 452 (525)
.++||-+| ++.+|+..|++|+++|.|++.++.+++.-...-+... |. .+| -.
T Consensus 167 g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g---~~ 243 (340)
T 3s2e_A 167 GQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAV---SP 243 (340)
T ss_dssp TSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSC---CH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCC---CH
Confidence 45788777 7888988899999999999999988653211001000 11 122 24
Q ss_pred HHHHHHHhccCCCcEEEEE
Q 043102 453 EFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq 471 (525)
..++.+.++|+|||++++-
T Consensus 244 ~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 244 KAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp HHHHHHHHHEEEEEEEEEC
T ss_pred HHHHHHHHHhccCCEEEEe
Confidence 6788999999999999864
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=81.62 E-value=0.59 Score=47.53 Aligned_cols=72 Identities=14% Similarity=0.110 Sum_probs=50.5
Q ss_pred CCeehhhc-------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCC--CC--------------Cc---ccCccc
Q 043102 398 VREVIFLG-------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLE--RN--------------DR---SFGHEY 450 (525)
Q Consensus 398 ~~rVLDIG-------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~--d~--------------D~---~vg~~~ 450 (525)
.++||-+| ++.+|+..|+ +|+++|.|++.++.|++.-...-+. +. |. .+|
T Consensus 191 g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g--- 267 (371)
T 1f8f_A 191 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTG--- 267 (371)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSC---
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCC---
Confidence 35888888 7788887899 7999999999999987542110010 00 11 223
Q ss_pred HHHHHHHHHhccCCCcEEEEEE
Q 043102 451 MEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~ 472 (525)
-+..++.+.++|++||++++-.
T Consensus 268 ~~~~~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 268 SPEILKQGVDALGILGKIAVVG 289 (371)
T ss_dssp CHHHHHHHHHTEEEEEEEEECC
T ss_pred CHHHHHHHHHHHhcCCEEEEeC
Confidence 2467889999999999998643
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=81.09 E-value=1.7 Score=48.79 Aligned_cols=70 Identities=11% Similarity=0.134 Sum_probs=47.8
Q ss_pred eehhhc---------HHHHHHhcC-----------CEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc---------
Q 043102 400 EVIFLG---------TIEVVKRTG-----------CKYTGITLAEKQLKYAGIKVKEADLERN------DR--------- 444 (525)
Q Consensus 400 rVLDIG---------a~~lA~~~G-----------~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~--------- 444 (525)
.|||+| ++.+++..| ++|++|+-|+.-+...+.+.+ .|++++ |.
T Consensus 412 VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~~~ 490 (745)
T 3ua3_A 412 VIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIAKD 490 (745)
T ss_dssp EEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccccc
Confidence 699999 345554333 499999999866655555554 577665 11
Q ss_pred ------------ccC----cccHHHHHHHHHhccCCCcEEEE
Q 043102 445 ------------SFG----HEYMEEFFGCCESLIAKDGLFVL 470 (525)
Q Consensus 445 ------------~vg----~~~~~~~f~~i~r~LkpGG~~vi 470 (525)
-+| .+-.++.+..+.+.|||||+++=
T Consensus 491 ~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~iP 532 (745)
T 3ua3_A 491 RGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISIP 532 (745)
T ss_dssp TTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEES
T ss_pred CCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEEC
Confidence 112 24567888888999999998763
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=80.65 E-value=1.5 Score=42.49 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=32.1
Q ss_pred CCeehhhc-----HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCC
Q 043102 398 VREVIFLG-----TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADL 439 (525)
Q Consensus 398 ~~rVLDIG-----a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl 439 (525)
++.|||.. +..+|.+.|.+++|+|++++.++.|++|++..++
T Consensus 213 ~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~~~~ 259 (260)
T 1g60_A 213 NDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQLEI 259 (260)
T ss_dssp TCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC---
T ss_pred CCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhccC
Confidence 34788876 3444555799999999999999999999987765
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=80.08 E-value=1.4 Score=40.13 Aligned_cols=66 Identities=15% Similarity=0.178 Sum_probs=46.2
Q ss_pred CCeehhhc--------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC------CC---------------Cc---c
Q 043102 398 VREVIFLG--------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE------RN---------------DR---S 445 (525)
Q Consensus 398 ~~rVLDIG--------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~------d~---------------D~---~ 445 (525)
..+||.+| +..+++..|++|++++.+++..+.+++ .|.. +. |. .
T Consensus 39 g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~ 114 (198)
T 1pqw_A 39 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGVEYVGDSRSVDFADEILELTDGYGVDVVLNS 114 (198)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCCSEEEETTCSTHHHHHHHHTTTCCEEEEEEC
T ss_pred CCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEEC
Confidence 34788888 455666669999999999998877654 2321 10 11 2
Q ss_pred cCcccHHHHHHHHHhccCCCcEEEEE
Q 043102 446 FGHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 446 vg~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
+| ...++.+.++|+|||++++-
T Consensus 115 ~g----~~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 115 LA----GEAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp CC----THHHHHHHHTEEEEEEEEEC
T ss_pred Cc----hHHHHHHHHHhccCCEEEEE
Confidence 23 25788899999999998864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 525 | ||||
| d1kpga_ | 285 | c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [ | 4e-14 | |
| d1kpia_ | 291 | c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [ | 1e-09 | |
| d2fk8a1 | 280 | c.66.1.18 (A:22-301) Methoxy mycolic acid synthase | 2e-09 |
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 70.7 bits (172), Expect = 4e-14
Identities = 49/222 (22%), Positives = 76/222 (34%), Gaps = 63/222 (28%)
Query: 361 NTLTQACRHISRHYDLSNELFCLFLDESLTYSCALF-------------KVREVI----- 402
+ L ++ HYDLS++ F LFLD + TYSCA F K+ +
Sbjct: 1 DELKPHFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGL 60
Query: 403 -------------FLGTIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERNDR----- 444
+ V++ G+TL++ Q + V ++ R+ R
Sbjct: 61 QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAG 120
Query: 445 ------------------SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERY------ 480
FGHE + FF L+ DG+ +L I+ +
Sbjct: 121 WEQFDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGL 180
Query: 481 ---NEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYN 519
F F+ IFPGG LPS+ + SA
Sbjct: 181 PMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTR 222
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 57.2 bits (137), Expect = 1e-09
Identities = 50/221 (22%), Positives = 68/221 (30%), Gaps = 70/221 (31%)
Query: 370 ISRHYDLSNELFCLFLDESLTYSCALF-------------KVREVI-------------- 402
+ HYD SNE F L+LD S+TYSCA F K + +
Sbjct: 9 VRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDI 68
Query: 403 ----FLGTIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERNDRSF------------ 446
V G+TL+E Q + E D R
Sbjct: 69 GCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVD 128
Query: 447 ------------------GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEF----- 483
G E + FF +L DG +L I+IPD+ +
Sbjct: 129 RIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTS 188
Query: 484 ----RLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNL 520
F+ IFPGG LP +S++ S A
Sbjct: 189 PMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERY 229
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 56.5 bits (135), Expect = 2e-09
Identities = 45/211 (21%), Positives = 64/211 (30%), Gaps = 63/211 (29%)
Query: 373 HYDLSNELFCLFLDESLTYSCALF-------------KVREVIFL--------------- 404
HYD+S++ F LF D + TYSCA F KV +
Sbjct: 3 HYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCG 62
Query: 405 ---GTIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERND------------------ 443
V+R G+TL++ Q + D R+
Sbjct: 63 WGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIV 122
Query: 444 -----RSFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSS---------DF 489
FGHE ++FF C +++ DG +Q R F
Sbjct: 123 SIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKF 182
Query: 490 MKEYIFPGGCLPSLSRITSAMSAASRLWYNL 520
+ IFPGG LPS + A
Sbjct: 183 IVTEIFPGGRLPSTEMMVEHGEKAGFTVPEP 213
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 525 | |||
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 100.0 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 100.0 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.98 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.6 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.22 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.22 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.17 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.06 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.06 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.02 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.01 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.01 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 98.98 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 98.93 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 98.91 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.86 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 98.82 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.82 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 98.78 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 98.78 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.77 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 98.75 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 98.67 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 98.65 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 98.61 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 98.56 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 98.56 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 98.5 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 98.36 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 98.34 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 98.26 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 98.25 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.21 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 98.17 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 98.16 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 98.14 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.14 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.14 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 98.13 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 98.07 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 97.96 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 97.89 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 97.88 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.87 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 97.81 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 97.8 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 97.74 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 97.72 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 97.62 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 97.6 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 97.59 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 97.59 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 97.49 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 97.47 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 97.39 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 97.35 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 97.31 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 97.29 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 97.28 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 97.2 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 97.05 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 96.92 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 96.82 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 96.61 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 96.56 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 96.56 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 96.21 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 96.2 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 96.12 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 96.0 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 95.94 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 95.5 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 95.24 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 94.86 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 94.75 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 94.19 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 94.18 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 94.17 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 94.16 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 94.12 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 93.9 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 93.4 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 93.21 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 92.84 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 92.1 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 91.78 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 91.57 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 91.17 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 90.92 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 90.63 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 90.24 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 88.86 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 88.5 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 88.25 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 88.17 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 87.86 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 87.41 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 86.25 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 85.36 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 85.03 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 84.96 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 84.94 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 84.48 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 84.36 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 84.29 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 84.17 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 84.16 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 83.96 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 83.77 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 83.22 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 83.21 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 82.36 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 80.46 |
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=3.6e-35 Score=295.08 Aligned_cols=161 Identities=31% Similarity=0.523 Sum_probs=144.0
Q ss_pred CchhHHHHhhhcccccchHHHHhccccccchhccccCCC-------------------------eehhhc------HHHH
Q 043102 361 NTLTQACRHISRHYDLSNELFCLFLDESLTYSCALFKVR-------------------------EVIFLG------TIEV 409 (525)
Q Consensus 361 N~~~~s~~nIa~hYDl~nd~y~l~Ld~~m~ys~a~f~~~-------------------------rVLDIG------a~~l 409 (525)
|+.+++.+||++|||++|+||++|||++|+||||||+++ |||||| |+++
T Consensus 1 ~~~~~~~~~i~~HYD~~~~fy~~~Lg~~~~YS~g~~~~~~~tL~eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~ 80 (285)
T d1kpga_ 1 DELKPHFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRA 80 (285)
T ss_dssp CCSCCCHHHHHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHH
T ss_pred CCCCccHHHHHHhcCCcHHHHHHhCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHH
Confidence 677899999999999999999999999999999999764 999999 8999
Q ss_pred HHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc--------ccCcccHHHHHHHHHhccCCCc
Q 043102 410 VKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR--------SFGHEYMEEFFGCCESLIAKDG 466 (525)
Q Consensus 410 A~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~--------~vg~~~~~~~f~~i~r~LkpGG 466 (525)
|+++||+|||||+|++|+++|++++++.|+.++ |+ |+|.++++.||++|.++|||||
T Consensus 81 a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG 160 (285)
T d1kpga_ 81 VEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADG 160 (285)
T ss_dssp HHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTC
T ss_pred HhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccccceeeehhhhhcCchhHHHHHHHHHhhcCCCC
Confidence 999999999999999999999999999998876 33 8888999999999999999999
Q ss_pred EEEEEEecCCCcchh---------cccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 467 LFVLQFISIPDERYN---------EFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 467 ~~viq~i~~~~~~~~---------~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
++++|+|+...+... .+....+||++||||||.+||++++..+++++ ||+|.-..
T Consensus 161 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~~~~~~e~a-gf~v~~~~ 224 (285)
T d1kpga_ 161 VMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASAN-GFTVTRVQ 224 (285)
T ss_dssp EEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTT-TCEEEEEE
T ss_pred cEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhhHHHHHHHh-chhhcccc
Confidence 999999997644321 12335689999999999999999999999995 99997654
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=8.3e-34 Score=285.90 Aligned_cols=158 Identities=33% Similarity=0.486 Sum_probs=139.6
Q ss_pred hHHHHhhhcccccchHHHHhccccccchhccccCCC-------------------------eehhhc------HHHHHHh
Q 043102 364 TQACRHISRHYDLSNELFCLFLDESLTYSCALFKVR-------------------------EVIFLG------TIEVVKR 412 (525)
Q Consensus 364 ~~s~~nIa~hYDl~nd~y~l~Ld~~m~ys~a~f~~~-------------------------rVLDIG------a~~lA~~ 412 (525)
+.+.++|++|||++|+||++|||++|+|||+||+++ +||||| ++++|++
T Consensus 3 ~~~~~~i~~HYD~~~~fy~~~Lg~~~~YS~~~~~~~~~tL~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~ 82 (291)
T d1kpia_ 3 KPPVEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAE 82 (291)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHH
T ss_pred CCcHhHHHHhcCCCHHHHHHhcCCCCCeeeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHh
Confidence 346689999999999999999999999999999865 999999 8899988
Q ss_pred cCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc--------ccC-------cccHHHHHHHHHhcc
Q 043102 413 TGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR--------SFG-------HEYMEEFFGCCESLI 462 (525)
Q Consensus 413 ~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~--------~vg-------~~~~~~~f~~i~r~L 462 (525)
+||+|||||+|++|+++|++++++.|+.++ |+ |++ .++|++||++|.++|
T Consensus 83 ~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~L 162 (291)
T d1kpia_ 83 YDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLT 162 (291)
T ss_dssp HCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTS
T ss_pred cCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999876 43 654 478999999999999
Q ss_pred CCCcEEEEEEecCCCcchhc---------ccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 463 AKDGLFVLQFISIPDERYNE---------FRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 463 kpGG~~viq~i~~~~~~~~~---------~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
||||++++|+|+.++..+.. +....+||++||||||+|||++++..+++++ ||+|.-..
T Consensus 163 kpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg~lps~~~~~~~~e~~-gl~v~~~~ 230 (291)
T d1kpia_ 163 PDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNA-GWKVERYH 230 (291)
T ss_dssp CTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHHH-TCEEEEEE
T ss_pred CCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCCCCCCHHHHHhhhccc-ccccceee
Confidence 99999999999998865432 1234679999999999999999999999985 99987543
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.98 E-value=7.2e-33 Score=277.38 Aligned_cols=148 Identities=30% Similarity=0.474 Sum_probs=131.8
Q ss_pred hcccccchHHHHhccccccchhccccCCC-------------------------eehhhc------HHHHHHhcCCEEEE
Q 043102 371 SRHYDLSNELFCLFLDESLTYSCALFKVR-------------------------EVIFLG------TIEVVKRTGCKYTG 419 (525)
Q Consensus 371 a~hYDl~nd~y~l~Ld~~m~ys~a~f~~~-------------------------rVLDIG------a~~lA~~~G~~VtG 419 (525)
++|||++|+||++|||++|+||||||+++ +||||| ++++|+++||+|||
T Consensus 1 qaHYD~~~~fy~~~ld~~m~YS~~~~~~~~~tL~~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~g 80 (280)
T d2fk8a1 1 QAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIG 80 (280)
T ss_dssp GGGGCCCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEE
T ss_pred CCCccCcHHHHHHhCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEE
Confidence 47999999999999999999999999774 999999 88899888999999
Q ss_pred EcCChHHHHHHHHHHHHcCCCCC---------------Cc--------ccCcccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 420 ITLAEKQLKYAGIKVKEADLERN---------------DR--------SFGHEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 420 IdlS~eql~~Ar~r~~~~gl~d~---------------D~--------~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
||+|++|+++|++++++.|+.+. |+ |++.++++.||++|.++|||||+++||+|+..
T Consensus 81 i~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~ 160 (280)
T d2fk8a1 81 LTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSY 160 (280)
T ss_dssp EESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred ecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeecc
Confidence 99999999999999999998765 33 88889999999999999999999999999876
Q ss_pred Ccchhc---------ccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEE
Q 043102 477 DERYNE---------FRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYN 519 (525)
Q Consensus 477 ~~~~~~---------~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~ 519 (525)
+..... +....+||++||||||+|||++++.++++++ ||+|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~~l~~~~e~a-Gf~v~ 211 (280)
T d2fk8a1 161 HPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKA-GFTVP 211 (280)
T ss_dssp CHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHT-TCBCC
T ss_pred CcchhhhcccccccccccccchhhhhccCCCcccchHhhhhhHHhh-ccccc
Confidence 643221 1234689999999999999999999999995 99875
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.60 E-value=2.5e-15 Score=147.52 Aligned_cols=152 Identities=17% Similarity=0.147 Sum_probs=116.9
Q ss_pred hHHHHhhhccccc--chHHHHh-ccccccchhccccCCC-------------------------------eehhhc----
Q 043102 364 TQACRHISRHYDL--SNELFCL-FLDESLTYSCALFKVR-------------------------------EVIFLG---- 405 (525)
Q Consensus 364 ~~s~~nIa~hYDl--~nd~y~l-~Ld~~m~ys~a~f~~~-------------------------------rVLDIG---- 405 (525)
+..++++..+||. ++.||+. |-++.+++ ++|+.+ +|||||
T Consensus 2 ~~~~~~~~~~y~~~~~~~fy~~~w~g~~~h~--G~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~l~~~~~vLDiGcG~G 79 (282)
T d2o57a1 2 KTVKDNAEIYYDDDDSDRFYFHVWGGEDIHV--GLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYG 79 (282)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHTTSCCCS--CCCCSSGGGSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTS
T ss_pred chHHHHHHHhcCCchhHHHHHHHcCCCCcee--eecCCCCCCcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCc
Confidence 3467889999998 7899965 54555543 455432 999999
Q ss_pred --HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc-----cc-CcccHHHHHHHHH
Q 043102 406 --TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR-----SF-GHEYMEEFFGCCE 459 (525)
Q Consensus 406 --a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~-----~v-g~~~~~~~f~~i~ 459 (525)
++.+|+++|++|+|||+|+.|++.|+++.+..|+.++ |. .+ ..++...+|+++.
T Consensus 80 ~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~ 159 (282)
T d2o57a1 80 GAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECA 159 (282)
T ss_dssp HHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHH
T ss_pred HHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccchhhhccCHHHHHHHHH
Confidence 7889988899999999999999999999999998765 22 00 1357889999999
Q ss_pred hccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 460 SLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 460 r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
++|||||++++.++...+.... ....+++..+.+| .++++.++.+.++++ ||+.+...
T Consensus 160 ~~LkpgG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~s~~~~~~~l~~~-Gf~~i~~~ 217 (282)
T d2o57a1 160 RVLKPRGVMAITDPMKEDGIDK--SSIQPILDRIKLH--DMGSLGLYRSLAKEC-GLVTLRTF 217 (282)
T ss_dssp HHEEEEEEEEEEEEEECTTCCG--GGGHHHHHHHTCS--SCCCHHHHHHHHHHT-TEEEEEEE
T ss_pred HhcCCCcEEEEEEeecCCCCch--hHHHHHHHHhccC--CCCCHHHHHHHHHHc-CCceEEEE
Confidence 9999999999998877654322 2345666666554 468999999999995 99876654
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=1.1e-11 Score=118.61 Aligned_cols=120 Identities=10% Similarity=0.013 Sum_probs=89.1
Q ss_pred cccCCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc-------------cc--
Q 043102 394 ALFKVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------DR-------------SF-- 446 (525)
Q Consensus 394 a~f~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~-------------~v-- 446 (525)
++-+..+||||| +..+++++|++|+|||+|++|++.|++++++.|+.++ |. ++
T Consensus 30 ~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~v~~~~~ 109 (245)
T d1nkva_ 30 RMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGA 109 (245)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEEEEEEESC
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCceeEEEEEeh
Confidence 344456999999 7888887899999999999999999999999998875 22 11
Q ss_pred --CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhc--ccCCCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 447 --GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEY--IFPGGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 447 --g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kY--IFPGg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
...+++.+++++.++|||||+++++......... ..-+... ..+...+.+..++...++++ ||+++-
T Consensus 110 ~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-G~~~v~ 180 (245)
T d1nkva_ 110 TWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPA------TEEIAQACGVSSTSDFLTLPGLVGAFDDL-GYDVVE 180 (245)
T ss_dssp GGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCS------SHHHHHTTTCSCGGGSCCHHHHHHHHHTT-TBCCCE
T ss_pred hhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCC------hHHHHHHhccCCCcccCCHHHHHHHHHHc-CCEEEE
Confidence 1347899999999999999999999876543221 1111111 12333467888999999995 887654
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.22 E-value=1.4e-11 Score=116.28 Aligned_cols=121 Identities=13% Similarity=0.047 Sum_probs=84.6
Q ss_pred CCeehhhc------HHHHHHh---cCCEEEEEcCChHHHHHHHHHHHHcCCCCC------C----------c--------
Q 043102 398 VREVIFLG------TIEVVKR---TGCKYTGITLAEKQLKYAGIKVKEADLERN------D----------R-------- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~---~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D----------~-------- 444 (525)
+.+||||| +..+++. .+++|||||+|++|++.|++++++.+.... | .
T Consensus 40 ~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l~ 119 (225)
T d1im8a_ 40 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQ 119 (225)
T ss_dssp TCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCGG
T ss_pred CCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeecc
Confidence 34999999 6677764 489999999999999999999987765443 1 1
Q ss_pred ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhccc---CchhHHhhcccC-------------CCCCCCHHHHHH
Q 043102 445 SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFR---LSSDFMKEYIFP-------------GGCLPSLSRITS 508 (525)
Q Consensus 445 ~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~---~~~~fi~kYIFP-------------Gg~LPsl~~i~~ 508 (525)
++..++...++++|+++|||||.+++.+++.++....... ....|...--++ .....+.+++..
T Consensus 120 ~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 199 (225)
T d1im8a_ 120 FLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIETHKV 199 (225)
T ss_dssp GSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHHHHHH
T ss_pred ccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHHHHHH
Confidence 4456789999999999999999999988877654321000 000110000000 013468899999
Q ss_pred HHHhcCCcEEE
Q 043102 509 AMSAASRLWYN 519 (525)
Q Consensus 509 ~~~~a~gl~V~ 519 (525)
.++++ ||+-+
T Consensus 200 ~L~~a-GF~~v 209 (225)
T d1im8a_ 200 RLKNV-GFSQV 209 (225)
T ss_dssp HHHHH-TCSEE
T ss_pred HHHHc-CCCce
Confidence 99996 88643
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.17 E-value=3.3e-11 Score=112.99 Aligned_cols=122 Identities=14% Similarity=0.032 Sum_probs=87.8
Q ss_pred ccCCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc----cc-
Q 043102 395 LFKVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR----SF- 446 (525)
Q Consensus 395 ~f~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~----~v- 446 (525)
+=++.+||||| +..++++ |++|+|||+|++|++.|++++++.+...- |. .+
T Consensus 13 l~~~~rVLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~l 91 (231)
T d1vl5a_ 13 LKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAA 91 (231)
T ss_dssp CCSCCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCG
T ss_pred CCCcCEEEEecccCcHHHHHHHHh-CCEEEEEECCHHHHhhhhhcccccccccccccccccccccccccccccccccccc
Confidence 33456999999 7777875 89999999999999999999988776432 22 01
Q ss_pred -CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhc-ccCCCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 447 -GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEY-IFPGGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 447 -g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kY-IFPGg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
..++...++++++++|||||++++.+.+.++.... ....+++.+. -.+.....+.+++.+.++++ ||+++-
T Consensus 92 ~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-Gf~~~~ 164 (231)
T d1vl5a_ 92 HHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAF--DVFYNYVEKERDYSHHRAWKKSDWLKMLEEA-GFELEE 164 (231)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHH--HHHHHHHHHHHCTTCCCCCBHHHHHHHHHHH-TCEEEE
T ss_pred cccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhcccCcccCCCHHHHHHHHHHC-CCEEEE
Confidence 13578899999999999999999988776653211 1122333332 22233556789999999996 998753
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=4.9e-11 Score=113.57 Aligned_cols=112 Identities=12% Similarity=-0.016 Sum_probs=79.1
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------------------
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------------------------------ 442 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------------------ 442 (525)
.+||||| ++.+++..+.+|+|+|+|+.|++.|++++++.+....
T Consensus 53 ~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (257)
T d2a14a1 53 DTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVK 132 (257)
T ss_dssp EEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEE
T ss_pred CEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhh
Confidence 3899999 5666765344799999999999999999876543210
Q ss_pred ---------------------Cc--------ccC--cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHh
Q 043102 443 ---------------------DR--------SFG--HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMK 491 (525)
Q Consensus 443 ---------------------D~--------~vg--~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~ 491 (525)
|. |+. .+++..+++++.++|||||++++.++..... |...
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~-~~~~-------- 203 (257)
T d2a14a1 133 RVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS-YMVG-------- 203 (257)
T ss_dssp EEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-EEET--------
T ss_pred cccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccccc-ceec--------
Confidence 22 232 2467889999999999999999988754332 2110
Q ss_pred hcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 492 EYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 492 kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
...++ .+..+++++.++++++ ||+|.-.
T Consensus 204 ~~~~~-~~~~~~~~~~~~l~~a-Gf~v~~~ 231 (257)
T d2a14a1 204 KREFS-CVALEKGEVEQAVLDA-GFDIEQL 231 (257)
T ss_dssp TEEEE-CCCCCHHHHHHHHHHT-TEEEEEE
T ss_pred ccccc-ccCCCHHHHHHHHHHC-CCEEEEE
Confidence 11122 2446899999999996 9987543
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.06 E-value=8.1e-11 Score=109.18 Aligned_cols=77 Identities=17% Similarity=0.300 Sum_probs=64.0
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc--------ccC
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR--------SFG 447 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~--------~vg 447 (525)
+.+||||| ++.+|+. |++|+|+|+|++|++.|++++...+.... |. |+.
T Consensus 38 ~~~ILDiGcG~G~~~~~la~~-~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~~ 116 (226)
T d1ve3a1 38 RGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFE 116 (226)
T ss_dssp CCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCC
T ss_pred CCEEEEECCCcchhhhhHhhh-hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhhCC
Confidence 45999999 7888874 99999999999999999999987764322 32 455
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
.++..++++++.++|||||+++++..+.
T Consensus 117 ~~d~~~~l~~i~~~LkpgG~lii~~~~~ 144 (226)
T d1ve3a1 117 PLELNQVFKEVRRVLKPSGKFIMYFTDL 144 (226)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred hhHHHHHHHHHHHHcCcCcEEEEEEcCc
Confidence 5678899999999999999999987654
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.02 E-value=7.9e-11 Score=112.23 Aligned_cols=74 Identities=15% Similarity=0.264 Sum_probs=61.5
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc---------cc-C
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR---------SF-G 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~---------~v-g 447 (525)
.+||||| ++.++++ |.+|+|||+|++|++.|+++++..|+.-+ |. ++ .
T Consensus 39 ~~vLDiGCG~G~~~~~l~~~-g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~~ 117 (246)
T d1y8ca_ 39 DDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIID 117 (246)
T ss_dssp TEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGGCCS
T ss_pred CeEEEEeCcCCHHHHHHHHh-CCccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeeeccCC
Confidence 4899999 8888875 89999999999999999999988776433 32 11 2
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
.++...+|++++++|||||.++++..
T Consensus 118 ~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 118 SDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 45778899999999999999998764
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.01 E-value=1.4e-10 Score=104.84 Aligned_cols=79 Identities=13% Similarity=0.054 Sum_probs=63.9
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------------------
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------------------- 442 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------------------- 442 (525)
+..|||||| ++++|++ |++|||||+|++|++.|++++++.+....
T Consensus 20 ~~~rvLd~GCG~G~~a~~la~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 98 (201)
T d1pjza_ 20 PGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIG 98 (201)
T ss_dssp TTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHH
T ss_pred CCCEEEEecCcCCHHHHHHHHc-CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccccc
Confidence 345999999 9999986 99999999999999999999865443100
Q ss_pred --Cc--------ccCcccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 443 --DR--------SFGHEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 443 --D~--------~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
|. ++...++..+++.+.++|||||++++......
T Consensus 99 ~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~ 142 (201)
T d1pjza_ 99 HCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYD 142 (201)
T ss_dssp SEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSC
T ss_pred ceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 22 45567789999999999999999988766544
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.01 E-value=3.5e-10 Score=106.97 Aligned_cols=120 Identities=17% Similarity=0.150 Sum_probs=83.4
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc-----cc-C
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR-----SF-G 447 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~-----~v-g 447 (525)
++.|||||| +..++++ +.+|+|||+|++|+++|++++++.+++.. |. .+ .
T Consensus 16 ~~~rILDiGcGtG~~~~~la~~-~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 94 (234)
T d1xxla_ 16 AEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHH 94 (234)
T ss_dssp TTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred CCCEEEEeCCcCcHHHHHHHHh-CCeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceeeeeceeec
Confidence 345999999 7788875 89999999999999999999988776422 22 11 1
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCC-CCCCCHHHHHHHHHhcCCcEEEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPG-GCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPG-g~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
..+...+++++.++|||||++++.....++...- ....+.+.++..|. ...-+..++...++++ ||.+.-
T Consensus 95 ~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gf~~~~ 165 (234)
T d1xxla_ 95 FSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVL--DEFVNHLNRLRDPSHVRESSLSEWQAMFSAN-QLAYQD 165 (234)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHH--HHHHHHHHHHHCTTCCCCCBHHHHHHHHHHT-TEEEEE
T ss_pred ccCHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHH--HHHHHHHHhhCCCcccccCCHHHHHHHHHHC-CCceeE
Confidence 3578999999999999999999977665543210 01112222322232 2233577888888885 998754
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=98.98 E-value=5.4e-10 Score=107.60 Aligned_cols=120 Identities=16% Similarity=0.212 Sum_probs=89.1
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC------C----------c--------ccC
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN------D----------R--------SFG 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D----------~--------~vg 447 (525)
.+||||| ++.+++++ +++++++|+ +++++.|++++++.|+.++ | . ++.
T Consensus 82 ~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~ 160 (253)
T d1tw3a2 82 RHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWP 160 (253)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSC
T ss_pred CEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccCC
Confidence 3999999 77888775 789999998 5799999999999998766 2 2 234
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhc-ccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNE-FRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~-~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
.++..+++++++++|||||+++|.+....+..... .....+ +....+.+|..+|.+++.+.++++ ||+++-.
T Consensus 161 d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~d-l~~~~~~~g~~rt~~e~~~ll~~A-Gf~~~~v 233 (253)
T d1tw3a2 161 DHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELD-LRMLVFLGGALRTREKWDGLAASA-GLVVEEV 233 (253)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHH-HHHHHHHSCCCCBHHHHHHHHHHT-TEEEEEE
T ss_pred chhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhh-HHHHhhCCCcCCCHHHHHHHHHHC-CCeEEEE
Confidence 45567889999999999999999876554332110 000111 222345688899999999999996 9987654
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.93 E-value=1.8e-10 Score=109.21 Aligned_cols=74 Identities=31% Similarity=0.521 Sum_probs=61.4
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc---------ccCc
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR---------SFGH 448 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~---------~vg~ 448 (525)
.+||||| ++.++++ |++|||||+|++|++.|++++++.++... |. |+..
T Consensus 43 ~~iLDiGcGtG~~~~~l~~~-~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~~~~~~~~~~~ 121 (251)
T d1wzna1 43 RRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDE 121 (251)
T ss_dssp CEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGGGGSCH
T ss_pred CEEEEeCCCCCccchhhccc-ceEEEEEeeccccccccccccccccccchheehhhhhcccccccchHhhhhhhhhcCCh
Confidence 3899999 7888875 99999999999999999999988775432 32 2334
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
++..+++++++++|||||+++++..
T Consensus 122 ~~~~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 122 EDLRKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEec
Confidence 6788999999999999999999654
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=3.6e-10 Score=106.35 Aligned_cols=113 Identities=13% Similarity=0.117 Sum_probs=82.1
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc--------c
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR--------S 445 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~--------~ 445 (525)
+..+||||| +.+++++.+.+|+|||+|++|++.|+++++..+.... |. |
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~h 139 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH 139 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 345999999 6667766677999999999999999999876543211 33 5
Q ss_pred cCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 446 FGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 446 vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
+..++...+++++.++|||||.+++.+....+.... .+ .......+..++.+.++++ ||+++-.
T Consensus 140 ~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~---------~~--~~~~~~~~~~~~~~l~~~a-Gf~ii~~ 203 (222)
T d2ex4a1 140 LTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVIL---------DD--VDSSVCRDLDVVRRIICSA-GLSLLAE 203 (222)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEE---------ET--TTTEEEEBHHHHHHHHHHT-TCCEEEE
T ss_pred chhhhhhhHHHHHHHhcCCcceEEEEEccccccccc---------cc--CCceeeCCHHHHHHHHHHc-CCEEEEE
Confidence 565667889999999999999999987665543210 00 0112335788999999995 9987643
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.86 E-value=1.4e-09 Score=100.54 Aligned_cols=117 Identities=13% Similarity=0.081 Sum_probs=77.7
Q ss_pred ccCCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH---c-----CCCCC--Cc--------ccCccc
Q 043102 395 LFKVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE---A-----DLERN--DR--------SFGHEY 450 (525)
Q Consensus 395 ~f~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~---~-----gl~d~--D~--------~vg~~~ 450 (525)
+.++.+||||| +..+ .+++|||+|++|++.|+++--. . .+.+. |. |+ ++
T Consensus 34 ~~~~~~vLDiGcG~G~~~~~~-----~~~~giD~s~~~~~~a~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~--~d 106 (208)
T d1vlma_ 34 LLPEGRGVEIGVGTGRFAVPL-----KIKIGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFV--DD 106 (208)
T ss_dssp HCCSSCEEEETCTTSTTHHHH-----TCCEEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGS--SC
T ss_pred hCCCCeEEEECCCCccccccc-----ceEEEEeCChhhcccccccccccccccccccccccccccccccccccccc--cc
Confidence 34456999999 3333 3579999999999999987211 0 11111 33 33 57
Q ss_pred HHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 451 MEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
...+++++.++|||||+++++........... ....+.....+.+..++|..++.+.++++ ||+++-.
T Consensus 107 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~l~~~l~~~-Gf~~i~v 174 (208)
T d1vlma_ 107 PERALKEAYRILKKGGYLIVGIVDRESFLGRE--YEKNKEKSVFYKNARFFSTEELMDLMRKA-GFEEFKV 174 (208)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHH--HHHTTTC-CCSTTCCCCCHHHHHHHHHHT-TCEEEEE
T ss_pred cccchhhhhhcCCCCceEEEEecCCcchhHHh--hhhccccccccccccCCCHHHHHHHHHHc-CCeEEEE
Confidence 88999999999999999999987544321110 01112222234456789999999999996 9986643
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=98.82 E-value=2.7e-09 Score=98.43 Aligned_cols=79 Identities=9% Similarity=0.034 Sum_probs=66.5
Q ss_pred cCCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc--------c
Q 043102 396 FKVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR--------S 445 (525)
Q Consensus 396 f~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~--------~ 445 (525)
...++||||| ++.++++ |++|||||+|++|++.|++++++.+++.. |. |
T Consensus 29 ~~~grvLDiGcG~G~~~~~la~~-g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~~~ 107 (198)
T d2i6ga1 29 VAPGRTLDLGCGNGRNSLYLAAN-GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMF 107 (198)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCGGG
T ss_pred CCCCcEEEECCCCCHHHHHHHHH-hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeeeec
Confidence 3445999999 8888985 99999999999999999999998887532 22 5
Q ss_pred cCcccHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 446 FGHEYMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 446 vg~~~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
+....+.++++++.++|||||++++.+...
T Consensus 108 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 108 LEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp SCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 556778999999999999999999976653
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.82 E-value=4.8e-09 Score=101.44 Aligned_cols=121 Identities=15% Similarity=0.142 Sum_probs=87.2
Q ss_pred eehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc--------ccCc
Q 043102 400 EVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR--------SFGH 448 (525)
Q Consensus 400 rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~--------~vg~ 448 (525)
+||||| +..+++++ +++++++|+ +++++.|++++++.|+.++ |. +...
T Consensus 84 ~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh~~~d 162 (256)
T d1qzza2 84 HVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSD 162 (256)
T ss_dssp EEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSCH
T ss_pred EEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhccccccccCc
Confidence 899999 78888875 789999998 7899999999999998876 22 2344
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCCcc-hhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPDER-YNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~-~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
++...++++++++|||||+++|.+...++.. ........--+.-..+.+|...+.+++.+.++++ ||+++-..
T Consensus 163 ~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~A-Gf~~~~~~ 236 (256)
T d1qzza2 163 EDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSA-GLALASER 236 (256)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTT-TEEEEEEE
T ss_pred HHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHC-CCceeEEE
Confidence 5667889999999999999999876543321 1000000001111235577888999999999995 99988764
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=4.6e-09 Score=99.25 Aligned_cols=106 Identities=14% Similarity=0.055 Sum_probs=77.0
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCC-------C---------CC-------------
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADL-------E---------RN------------- 442 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl-------~---------d~------------- 442 (525)
+.||||+| +.++|++ |++|||||+|+++++.|+++....+. . +.
T Consensus 46 ~~rvLd~GCG~G~~a~~LA~~-G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~ 124 (229)
T d2bzga1 46 GLRVFFPLCGKAVEMKWFADR-GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPR 124 (229)
T ss_dssp SCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGG
T ss_pred CCEEEEeCCCCcHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhccc
Confidence 45999999 9999985 99999999999999999998754321 0 00
Q ss_pred ------Cc--------ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHH
Q 043102 443 ------DR--------SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITS 508 (525)
Q Consensus 443 ------D~--------~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~ 508 (525)
|. |+..+..+.|++++.++|||||++++-+......... . | -+..+.+++.+
T Consensus 125 ~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~----g---------p-p~~~~~~el~~ 190 (229)
T d2bzga1 125 TNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHP----G---------P-PFYVPHAEIER 190 (229)
T ss_dssp SCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCC----C---------S-SCCCCHHHHHH
T ss_pred cccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCC----C---------C-CCCCCHHHHHH
Confidence 22 5567889999999999999999998877765432110 0 1 12347788887
Q ss_pred HHHhcCCcEEEE
Q 043102 509 AMSAASRLWYNL 520 (525)
Q Consensus 509 ~~~~a~gl~V~~ 520 (525)
.++. ++.|..
T Consensus 191 lf~~--~~~i~~ 200 (229)
T d2bzga1 191 LFGK--ICNIRC 200 (229)
T ss_dssp HHTT--TEEEEE
T ss_pred HhcC--CCEEEE
Confidence 7754 566654
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=98.78 E-value=1.3e-09 Score=102.06 Aligned_cols=75 Identities=20% Similarity=0.260 Sum_probs=58.1
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcC-------CC--CC--Cc--ccC-----cccHHH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEAD-------LE--RN--DR--SFG-----HEYMEE 453 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~g-------l~--d~--D~--~vg-----~~~~~~ 453 (525)
+.+||||| +..+++. |++|+|||+|++|++.|+++..... +. +. |. .++ ..+...
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~~~ 121 (246)
T d2avna1 43 PCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDK 121 (246)
T ss_dssp CCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHH
T ss_pred CCEEEEECCCCchhccccccc-ceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhhHHH
Confidence 34999999 7888874 9999999999999999999853311 11 11 43 111 357889
Q ss_pred HHHHHHhccCCCcEEEEEEe
Q 043102 454 FFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 454 ~f~~i~r~LkpGG~~viq~i 473 (525)
+|+++.++|||||.+++...
T Consensus 122 ~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 122 AFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp HHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHhhcCcCcEEEEEEC
Confidence 99999999999999999764
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=1.4e-09 Score=109.29 Aligned_cols=114 Identities=16% Similarity=0.116 Sum_probs=78.2
Q ss_pred chhHHHHhhhcccccchHHHHhccccc--cchhccc---------cC--C-----------------------Ceehhhc
Q 043102 362 TLTQACRHISRHYDLSNELFCLFLDES--LTYSCAL---------FK--V-----------------------REVIFLG 405 (525)
Q Consensus 362 ~~~~s~~nIa~hYDl~nd~y~l~Ld~~--m~ys~a~---------f~--~-----------------------~rVLDIG 405 (525)
...+..+++.+|||+.++++..+++.. +.|++++ +. + .+|||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~vlD~G 159 (328)
T d1nw3a_ 80 SIHQLWKGTTQPMKLNTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLG 159 (328)
T ss_dssp HHHHHHHTTSCCCCSSCCCCHHHHHHHHHHHHHHHCSCGGGGGCSCSSSTTCCCCCCHHHHHHHHHHSCCCTTCEEEEET
T ss_pred HHHhhhccchhhHHhcccccHHHHHHHHhhhhhhccCCHHHhccccCCCCCchhhhHHHHHHHHHHHcCCCCCCEEEEcC
Confidence 345667888889987666555555442 2333221 11 1 1999999
Q ss_pred ------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHc-------CCCCC-------C------------c---cc---
Q 043102 406 ------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEA-------DLERN-------D------------R---SF--- 446 (525)
Q Consensus 406 ------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~-------gl~d~-------D------------~---~v--- 446 (525)
++.+|+.++| +|+|||+|+++++.|+++.++. |+... | + .+
T Consensus 160 cG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~~~advi~~~~~ 239 (328)
T d1nw3a_ 160 SGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNF 239 (328)
T ss_dssp CTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHHHHCSEEEECCT
T ss_pred CCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccccCcceEEEEcce
Confidence 7788887787 7999999999999999887652 33221 2 2 11
Q ss_pred -CcccHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 447 -GHEYMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 447 -g~~~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
-.++....++++.+.|||||++++.....
T Consensus 240 ~f~~~~~~~l~e~~r~LKpGg~iv~~~~~~ 269 (328)
T d1nw3a_ 240 AFGPEVDHQLKERFANMKEGGRIVSSKPFA 269 (328)
T ss_dssp TTCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred ecchHHHHHHHHHHHhCCCCcEEEEecccC
Confidence 13567789999999999999998765443
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=98.75 E-value=5.8e-09 Score=101.35 Aligned_cols=75 Identities=20% Similarity=0.174 Sum_probs=62.7
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----C-----------c---ccCcccHHH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN----D-----------R---SFGHEYMEE 453 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----D-----------~---~vg~~~~~~ 453 (525)
+.+|||+| ++.+++ .|++|+|||+|+++++.|+++++..|+..+ | . .+.......
T Consensus 121 g~~VLDiGcGsG~l~i~aa~-~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~~~~l~~ 199 (254)
T d2nxca1 121 GDKVLDLGTGSGVLAIAAEK-LGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAELHAA 199 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHH-TTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHHHHHH
T ss_pred cCEEEEcccchhHHHHHHHh-cCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhccccccHHH
Confidence 34999999 777666 599999999999999999999999998765 1 1 234456788
Q ss_pred HHHHHHhccCCCcEEEEEEe
Q 043102 454 FFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 454 ~f~~i~r~LkpGG~~viq~i 473 (525)
+++++.++|||||++++..|
T Consensus 200 l~~~~~~~LkpGG~lilSgi 219 (254)
T d2nxca1 200 LAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp HHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEEec
Confidence 99999999999999998755
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.67 E-value=1.6e-08 Score=92.69 Aligned_cols=77 Identities=16% Similarity=0.196 Sum_probs=65.2
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc---------------ccCcc
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------DR---------------SFGHE 449 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~---------------~vg~~ 449 (525)
++++||||| ++.+|+. +++|+|+|+|+++++.|++++++.|+.++ |+ ..+..
T Consensus 33 ~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~~ 111 (186)
T d1l3ia_ 33 KNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGG 111 (186)
T ss_dssp TTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCTT
T ss_pred CCCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCccc
Confidence 455999999 7888875 78999999999999999999999999876 22 11245
Q ss_pred cHHHHHHHHHhccCCCcEEEEEEec
Q 043102 450 YMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 450 ~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
+.+++++.+.+.|||||++++..++
T Consensus 112 ~~~~~~~~~~~~LkpgG~lvi~~~~ 136 (186)
T d1l3ia_ 112 ELQEILRIIKDKLKPGGRIIVTAIL 136 (186)
T ss_dssp CHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred cchHHHHHHHHHhCcCCEEEEEeec
Confidence 7889999999999999999987654
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=98.65 E-value=5.8e-09 Score=100.71 Aligned_cols=112 Identities=11% Similarity=0.080 Sum_probs=79.4
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCC-------------CCC--Cc--------ccCcc
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADL-------------ERN--DR--------SFGHE 449 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl-------------~d~--D~--------~vg~~ 449 (525)
.+||||| +.++++++..+|++||+|++|++.|+++.+..+. ++. |. |+..+
T Consensus 95 ~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~hl~d~ 174 (254)
T d1xtpa_ 95 SRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDA 174 (254)
T ss_dssp SEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHH
T ss_pred CeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeeccccccchh
Confidence 4999999 7777876667999999999999999998754321 111 33 55556
Q ss_pred cHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 450 YMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 450 ~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
+...+|++|.++|||||.++|.+.......+... .. -+....+..++.+.++++ ||+|+-.
T Consensus 175 d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d-----~~-----d~~~~rs~~~~~~l~~~a-Gf~ii~~ 235 (254)
T d1xtpa_ 175 DFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVD-----KE-----DSSLTRSDIHYKRLFNES-GVRVVKE 235 (254)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEE-----TT-----TTEEEBCHHHHHHHHHHH-TCCEEEE
T ss_pred hhHHHHHHHHHhcCCCcEEEEEecCCCCCcceec-----cc-----CCceeCCHHHHHHHHHHc-CCEEEEE
Confidence 6789999999999999999998765543221100 00 112234788899999986 9988653
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.61 E-value=1.7e-08 Score=98.61 Aligned_cols=74 Identities=22% Similarity=0.262 Sum_probs=59.6
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCC-----------------------C-Cc----
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLER-----------------------N-DR---- 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d-----------------------~-D~---- 444 (525)
.+||||| ++.+|++ |++|||||+|++|++.|+++..+.+... . |.
T Consensus 58 ~~vLD~GcG~G~~~~~la~~-g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~~~ 136 (292)
T d1xvaa_ 58 HRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICL 136 (292)
T ss_dssp CEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEEC
T ss_pred CEEEEecCCCcHHHHHHHHc-CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEEEe
Confidence 4999999 8888986 9999999999999999999987655321 1 22
Q ss_pred -----ccC-----cccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 445 -----SFG-----HEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 445 -----~vg-----~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
|+. .++...+++++.++|||||+++++..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 137 GNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp SSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 222 24577899999999999999999764
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=98.56 E-value=3.5e-08 Score=94.20 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=59.5
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-------------------Cc--------
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-------------------DR-------- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-------------------D~-------- 444 (525)
+.+||||| +..+++...++|+|||+|++|++.|++|+++.+.... |.
T Consensus 25 ~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l~ 104 (252)
T d1ri5a_ 25 GDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFH 104 (252)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGG
T ss_pred cCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcceee
Confidence 34999999 7788876346899999999999999999987654321 22
Q ss_pred cc--CcccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 445 SF--GHEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 445 ~v--g~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
|+ ..+++..+|+++.++|||||++++...
T Consensus 105 ~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 105 YAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 22 135678999999999999999998653
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=1.1e-08 Score=96.90 Aligned_cols=74 Identities=9% Similarity=-0.025 Sum_probs=58.1
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------------Cc-----
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------------DR----- 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------------D~----- 444 (525)
.+||||| +.++|++.+++|||||+|++|++.|+++.++.+.... |.
T Consensus 55 ~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~~~ 134 (229)
T d1zx0a1 55 GRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSE 134 (229)
T ss_dssp EEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBG
T ss_pred CeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccccccc
Confidence 4999999 7888876567999999999999999999876543211 22
Q ss_pred -ccCcccHHHHHHHHHhccCCCcEEEEEE
Q 043102 445 -SFGHEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 445 -~vg~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.....+.+.+++++.|+|||||++++..
T Consensus 135 ~~~~~~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 135 ETWHTHQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp GGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 1123467889999999999999998743
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=98.50 E-value=6.4e-08 Score=90.81 Aligned_cols=124 Identities=15% Similarity=0.147 Sum_probs=79.1
Q ss_pred cccCCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC-------CC------Cc----cc--Cc
Q 043102 394 ALFKVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE-------RN------DR----SF--GH 448 (525)
Q Consensus 394 a~f~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~-------d~------D~----~v--g~ 448 (525)
.+++..+||||| +..++++ |.+|+|||+|+++++.|+++... ++. +. |. +| ..
T Consensus 17 ~~~~~~~VLDiGcG~G~~~~~l~~~-g~~v~giD~s~~~i~~a~~~~~~-~~~~~~~~~~~~~~~~~fD~I~~~~vleh~ 94 (225)
T d2p7ia1 17 PFFRPGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRLKD-GITYIHSRFEDAQLPRRYDNIVLTHVLEHI 94 (225)
T ss_dssp GGCCSSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHSCS-CEEEEESCGGGCCCSSCEEEEEEESCGGGC
T ss_pred hhCCCCcEEEEeCCCcHHHHHHHHc-CCeEEEEeCcHHHhhhhhccccc-ccccccccccccccccccccccccceeEec
Confidence 345667999999 7777764 89999999999999999988642 111 00 33 11 13
Q ss_pred ccHHHHHHHHH-hccCCCcEEEEEEecCCCcchhcc-------cCchhHHhhc-ccCCCCCCCHHHHHHHHHhcCCcEEE
Q 043102 449 EYMEEFFGCCE-SLIAKDGLFVLQFISIPDERYNEF-------RLSSDFMKEY-IFPGGCLPSLSRITSAMSAASRLWYN 519 (525)
Q Consensus 449 ~~~~~~f~~i~-r~LkpGG~~viq~i~~~~~~~~~~-------~~~~~fi~kY-IFPGg~LPsl~~i~~~~~~a~gl~V~ 519 (525)
++...+++++. ++|||||.+++....... .+... .....+.... -++....-+..++.+.++++ ||+|.
T Consensus 95 ~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~-Gf~i~ 172 (225)
T d2p7ia1 95 DDPVALLKRINDDWLAEGGRLFLVCPNANA-VSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRA-GLQVT 172 (225)
T ss_dssp SSHHHHHHHHHHTTEEEEEEEEEEEECTTC-HHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHT-TCEEE
T ss_pred CCHHHHHHHHHHHhcCCCceEEEEeCCccc-HHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHC-CCEEE
Confidence 57789999998 899999999997543221 10000 0001111111 12223344788999999995 99986
Q ss_pred EE
Q 043102 520 LA 521 (525)
Q Consensus 520 ~~ 521 (525)
..
T Consensus 173 ~~ 174 (225)
T d2p7ia1 173 YR 174 (225)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=98.36 E-value=1.3e-07 Score=92.21 Aligned_cols=80 Identities=14% Similarity=0.079 Sum_probs=64.9
Q ss_pred ccCCCeehhhc------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc-ccCc
Q 043102 395 LFKVREVIFLG------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR-SFGH 448 (525)
Q Consensus 395 ~f~~~rVLDIG------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~-~vg~ 448 (525)
+-+..+|||+| +..+|+. .+++|+|+|+|+++++.|+++++..|+.+. |. .++.
T Consensus 101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V~~d~ 180 (266)
T d1o54a_ 101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDV 180 (266)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEECC
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccccceeeeEecC
Confidence 34556999999 7788875 368999999999999999999999888554 22 2345
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
.+...+++++.++|||||++++...+
T Consensus 181 p~p~~~l~~~~~~LKpGG~lv~~~P~ 206 (266)
T d1o54a_ 181 PDPWNYIDKCWEALKGGGRFATVCPT 206 (266)
T ss_dssp SCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred CCHHHHHHHHHhhcCCCCEEEEEeCc
Confidence 66788999999999999999986543
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=4.8e-07 Score=87.13 Aligned_cols=116 Identities=13% Similarity=-0.015 Sum_probs=78.6
Q ss_pred cccCCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCC--------------------------
Q 043102 394 ALFKVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLER-------------------------- 441 (525)
Q Consensus 394 a~f~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d-------------------------- 441 (525)
+-.+..+||||| ++..+.+...+|+|+|+|+.|++.|++++++.+...
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 334455999999 444454456799999999999999998875432110
Q ss_pred --------------C-------------Cc--------ccC--cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhccc
Q 043102 442 --------------N-------------DR--------SFG--HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFR 484 (525)
Q Consensus 442 --------------~-------------D~--------~vg--~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~ 484 (525)
. |. |+. .+++..+++++.++|||||.+++..+..... +.
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~-~~--- 206 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESW-YL--- 206 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCE-EE---
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcc-cc---
Confidence 0 22 222 3467889999999999999999877653321 11
Q ss_pred CchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 485 LSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 485 ~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
....-|+. +..+.+++.++++++ ||+|+.
T Consensus 207 -----~~~~~~~~-~~~t~e~v~~~l~~a-Gf~v~~ 235 (263)
T d2g72a1 207 -----AGEARLTV-VPVSEEEVREALVRS-GYKVRD 235 (263)
T ss_dssp -----ETTEEEEC-CCCCHHHHHHHHHHT-TEEEEE
T ss_pred -----cCCccccc-CCCCHHHHHHHHHHC-CCeEEE
Confidence 11112322 336899999999995 999864
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.26 E-value=3.9e-07 Score=83.69 Aligned_cols=73 Identities=18% Similarity=0.271 Sum_probs=60.2
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc-------c
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR-------S 445 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~-------~ 445 (525)
+..+||||| ++.+|+. +.+|+++|+|+++++.|+++++..++... |. |
T Consensus 52 ~~~~VLDiGcG~G~~~~~la~~-~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~fD~Ii~~~p~~ 130 (194)
T d1dusa_ 52 KDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPIR 130 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEEECCCST
T ss_pred CCCeEEEEeecCChhHHHHHhh-ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCceEEEEcccEE
Confidence 345999999 7777764 78999999999999999999998877542 22 3
Q ss_pred cCcccHHHHHHHHHhccCCCcEEEE
Q 043102 446 FGHEYMEEFFGCCESLIAKDGLFVL 470 (525)
Q Consensus 446 vg~~~~~~~f~~i~r~LkpGG~~vi 470 (525)
.+.+....+++++.++|||||++++
T Consensus 131 ~~~~~~~~~l~~~~~~LkpgG~l~i 155 (194)
T d1dusa_ 131 AGKEVLHRIIEEGKELLKDNGEIWV 155 (194)
T ss_dssp TCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ecchhhhhHHHHHHHhcCcCcEEEE
Confidence 4555578899999999999999876
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.25 E-value=7.1e-07 Score=84.94 Aligned_cols=108 Identities=10% Similarity=0.027 Sum_probs=73.1
Q ss_pred CCeehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc-----cc-Cc
Q 043102 398 VREVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR-----SF-GH 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~-----~v-g~ 448 (525)
+.+||||| +.++|+. .+..|+|||+|++|++.|+++++..+.... |. .+ ..
T Consensus 75 G~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~~~ 154 (230)
T d1g8sa_ 75 DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQP 154 (230)
T ss_dssp TCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCST
T ss_pred CCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccccch
Confidence 34999999 7788876 357999999999999999999766432110 11 11 24
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
.+...+++++.+.|||||.+++..-...... ..... ...+++.+.++++ ||++.-.+
T Consensus 155 ~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~----~~~~~------------~~~~e~~~~L~~a-GF~ive~i 211 (230)
T d1g8sa_ 155 NQAEILIKNAKWFLKKGGYGMIAIKARSIDV----TKDPK------------EIFKEQKEILEAG-GFKIVDEV 211 (230)
T ss_dssp THHHHHHHHHHHHEEEEEEEEEEEEGGGTCS----SSCHH------------HHHHHHHHHHHHH-TEEEEEEE
T ss_pred HHHHHHHHHHHHhcccCceEEEEeeccccCC----CCCHH------------HHHHHHHHHHHHc-CCEEEEEe
Confidence 5678899999999999999988543321110 00000 0125677888885 99886543
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.21 E-value=9.1e-07 Score=91.02 Aligned_cols=76 Identities=12% Similarity=0.083 Sum_probs=58.9
Q ss_pred CCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCC-------C---------CC-----------
Q 043102 397 KVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADL-------E---------RN----------- 442 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl-------~---------d~----------- 442 (525)
++++||||| ++.+|+++|| +|+|||+|++|++.|++++++.+. . ..
T Consensus 216 pgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~ 295 (406)
T d1u2za_ 216 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELI 295 (406)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHG
T ss_pred CCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcccccccc
Confidence 445999999 7888888887 899999999999999999876321 0 00
Q ss_pred ---Cc-----ccCcccHHHHHHHHHhccCCCcEEEEEE
Q 043102 443 ---DR-----SFGHEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 443 ---D~-----~vg~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
|. ....+++...++++.+.|||||++++..
T Consensus 296 ~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 296 PQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp GGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence 11 1124578899999999999999998743
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=98.17 E-value=5.1e-07 Score=87.79 Aligned_cols=76 Identities=20% Similarity=0.173 Sum_probs=60.0
Q ss_pred CCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc----cc--Cc
Q 043102 398 VREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR----SF--GH 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~----~v--g~ 448 (525)
..+||||| +..+++.. +++|+|||+|+++++.|+++++..++... |. ++ ..
T Consensus 28 ~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD~v~~~~~l~~~ 107 (281)
T d2gh1a1 28 PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHM 107 (281)
T ss_dssp CCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCGGGC
T ss_pred cCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCceEEEEehhhhcC
Confidence 34999999 67777653 68999999999999999999987664211 22 11 13
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
++...+++++.++|||||++++.+.
T Consensus 108 ~d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 108 TTPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp SSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 5788999999999999999998763
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.16 E-value=9.6e-07 Score=82.71 Aligned_cols=76 Identities=13% Similarity=0.150 Sum_probs=58.4
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCC-----CCC----------Cc-----c-c-Cc
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADL-----ERN----------DR-----S-F-GH 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl-----~d~----------D~-----~-v-g~ 448 (525)
+.+||||| +.++|+.. .++|+|||+|++|++.|+++++..+. .+. |. + + ..
T Consensus 57 g~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~~~~ 136 (209)
T d1nt2a_ 57 DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQK 136 (209)
T ss_dssp SCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECCCST
T ss_pred CCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecccCh
Confidence 35999999 67778753 46999999999999999999987642 111 11 1 2 24
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
.+.+.++++++++|||||++++-..
T Consensus 137 ~~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 137 NQIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHhccCCeEEEEEE
Confidence 5678899999999999999988653
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=98.14 E-value=2.5e-06 Score=79.69 Aligned_cols=74 Identities=22% Similarity=0.279 Sum_probs=59.3
Q ss_pred Ceehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----Cc---------------cc--C--
Q 043102 399 REVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN-----DR---------------SF--G-- 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D~---------------~v--g-- 447 (525)
+.||||| ++.+|++ .+..++|||+|+.++..|.+++++.|+..- |+ .+ .
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P 110 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDP 110 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCC
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccccc
Confidence 4899999 7788876 589999999999999999999999998632 32 00 0
Q ss_pred ---ccc------HHHHHHHHHhccCCCcEEEEEE
Q 043102 448 ---HEY------MEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 448 ---~~~------~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.++ .+.+++.+.|+|||||.+.|.+
T Consensus 111 ~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 111 WPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 111 2689999999999999998864
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=3.3e-06 Score=81.06 Aligned_cols=115 Identities=12% Similarity=0.169 Sum_probs=73.5
Q ss_pred eehhhc------HHHHHH----hc---CCEEEEEcCChHHHHHHHHHHHHcCC-C-----------------------CC
Q 043102 400 EVIFLG------TIEVVK----RT---GCKYTGITLAEKQLKYAGIKVKEADL-E-----------------------RN 442 (525)
Q Consensus 400 rVLDIG------a~~lA~----~~---G~~VtGIdlS~eql~~Ar~r~~~~gl-~-----------------------d~ 442 (525)
+||||| +..+++ ++ +++++|||+|++|++.|++++++..- . +.
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQ 122 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCC
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCC
Confidence 899999 344433 22 45899999999999999999764221 1 11
Q ss_pred --Cc----cc--CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCC---CCCCCHHHHHHHHH
Q 043102 443 --DR----SF--GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPG---GCLPSLSRITSAMS 511 (525)
Q Consensus 443 --D~----~v--g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPG---g~LPsl~~i~~~~~ 511 (525)
|. ++ ..++...++++++++|||||.+++....... .+.. -...+..+ |+. ...++..++.+.++
T Consensus 123 ~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~-~~~~--l~~~~~~~--~~~~~~~~~~~~~~~~~~L~ 197 (280)
T d1jqea_ 123 KWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSS-GWDK--LWKKYGSR--FPQDDLCQYITSDDLTQMLD 197 (280)
T ss_dssp CEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTS-HHHH--HHHHHGGG--SCCCTTSCCCCHHHHHHHHH
T ss_pred ceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcc-hHHH--HHHHHHHh--cCCCcccccCCHHHHHHHHH
Confidence 33 11 2357899999999999999999987654322 1110 00111222 232 23466788888888
Q ss_pred hcCCcEEEE
Q 043102 512 AASRLWYNL 520 (525)
Q Consensus 512 ~a~gl~V~~ 520 (525)
+. |+.+..
T Consensus 198 ~~-G~~~~~ 205 (280)
T d1jqea_ 198 NL-GLKYEC 205 (280)
T ss_dssp HH-TCCEEE
T ss_pred HC-CCceEE
Confidence 85 886543
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=3.9e-06 Score=79.17 Aligned_cols=84 Identities=11% Similarity=0.225 Sum_probs=70.5
Q ss_pred ccCCCeehhhc------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc----------------
Q 043102 395 LFKVREVIFLG------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEADLERN------DR---------------- 444 (525)
Q Consensus 395 ~f~~~rVLDIG------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~---------------- 444 (525)
.....+||||| ++.+|+. .+++|+++|.+++..+.|++.++++|+.++ |+
T Consensus 57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f 136 (219)
T d2avda1 57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 136 (219)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence 33445999999 7888875 378999999999999999999999999887 22
Q ss_pred -----ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCc
Q 043102 445 -----SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDE 478 (525)
Q Consensus 445 -----~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~ 478 (525)
...+++|..||+.+.++|+|||.++++.+.....
T Consensus 137 D~ifiD~dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~ 175 (219)
T d2avda1 137 DVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGK 175 (219)
T ss_dssp EEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCSGGGG
T ss_pred cEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEeCCcccCc
Confidence 2246789999999999999999999999876543
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=98.13 E-value=1.7e-07 Score=88.09 Aligned_cols=107 Identities=11% Similarity=0.057 Sum_probs=70.6
Q ss_pred ccCCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc-cc--
Q 043102 395 LFKVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR-SF-- 446 (525)
Q Consensus 395 ~f~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~-~v-- 446 (525)
+=++++||||| +..+|+.. +++|+++|+++++++.|+++++..++... |. .+
T Consensus 73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~ 152 (213)
T d1dl5a1 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTV 152 (213)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECS
T ss_pred ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhhc
Confidence 33455999999 66777764 47999999999999999999998887543 32 11
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEecC---CCcchhcccCchhHHhhcccCCCCCCCHH
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFISI---PDERYNEFRLSSDFMKEYIFPGGCLPSLS 504 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~~---~~~~~~~~~~~~~fi~kYIFPGg~LPsl~ 504 (525)
+.++ +.+.+.+.|||||++++-.-.. ....+...+....+++++.|+....|...
T Consensus 153 ~~~~---~p~~l~~~LkpGG~lv~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fvpl~g 210 (213)
T d1dl5a1 153 GVDE---VPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKDPYLVGNYKLETRFITAGG 210 (213)
T ss_dssp BBSC---CCHHHHHHEEEEEEEEEEBCBGGGTBCEEEEEEEETTEEEEEEEEECCCCBCCG
T ss_pred cHHH---hHHHHHHhcCCCcEEEEEECccCCcEEEEEEEEEeCCeEEEEEEeeEEEEECCC
Confidence 1222 2346778899999998732111 11111111234556778888887777543
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=98.07 E-value=1.6e-06 Score=83.57 Aligned_cols=80 Identities=14% Similarity=-0.012 Sum_probs=61.9
Q ss_pred ccCCCeehhhc------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc-ccCc
Q 043102 395 LFKVREVIFLG------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR-SFGH 448 (525)
Q Consensus 395 ~f~~~rVLDIG------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~-~vg~ 448 (525)
+-+..+|||+| +..+|+. .+++|+++|+|+++++.|++++++.+..++ |+ .+..
T Consensus 83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld~ 162 (250)
T d1yb2a1 83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADI 162 (250)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEECC
T ss_pred CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeecC
Confidence 44556999999 6777765 357999999999999999999988654333 22 2244
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
.+...+++.+.++|||||++++...+
T Consensus 163 p~p~~~l~~~~~~LKpGG~lv~~~P~ 188 (250)
T d1yb2a1 163 PDPWNHVQKIASMMKPGSVATFYLPN 188 (250)
T ss_dssp SCGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred CchHHHHHHHHHhcCCCceEEEEeCC
Confidence 45568899999999999999986543
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.96 E-value=4.8e-06 Score=77.64 Aligned_cols=74 Identities=19% Similarity=0.295 Sum_probs=59.4
Q ss_pred Ceehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----Cc---------------cc--C--
Q 043102 399 REVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN-----DR---------------SF--G-- 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D~---------------~v--g-- 447 (525)
+.||||| ++.+|+. .+..++|||+|+.++..|.+++++.+++.- |+ ++ .
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPdP 112 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDP 112 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCCC
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccccc
Confidence 4799999 7788876 489999999999999999999999887632 22 11 1
Q ss_pred ---ccc------HHHHHHHHHhccCCCcEEEEEE
Q 043102 448 ---HEY------MEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 448 ---~~~------~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.++ .+.+++.+.++|||||.+.+.+
T Consensus 113 w~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 113 WPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 111 2789999999999999998865
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=97.89 E-value=1.1e-06 Score=84.93 Aligned_cols=73 Identities=11% Similarity=0.093 Sum_probs=52.8
Q ss_pred Ceehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCC-----C-----CC--Cc--ccCcccHHHHHHH
Q 043102 399 REVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADL-----E-----RN--DR--SFGHEYMEEFFGC 457 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl-----~-----d~--D~--~vg~~~~~~~f~~ 457 (525)
.+||||| +..+++. .+++|+|||+|++|++.|+++.....+ . +. |. ++.. +..+++
T Consensus 86 ~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~---~~~~~e 162 (268)
T d1p91a_ 86 TAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA---PCKAEE 162 (268)
T ss_dssp CEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC---CCCHHH
T ss_pred CEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCC---HHHHHH
Confidence 4999999 6777876 378999999999999999988644221 1 11 33 2211 123678
Q ss_pred HHhccCCCcEEEEEEec
Q 043102 458 CESLIAKDGLFVLQFIS 474 (525)
Q Consensus 458 i~r~LkpGG~~viq~i~ 474 (525)
+.|+|||||++++.+..
T Consensus 163 ~~rvLkpgG~l~~~~p~ 179 (268)
T d1p91a_ 163 LARVVKPGGWVITATPG 179 (268)
T ss_dssp HHHHEEEEEEEEEEEEC
T ss_pred HHHHhCCCcEEEEEeeC
Confidence 99999999999997653
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.88 E-value=7.4e-06 Score=79.09 Aligned_cols=78 Identities=13% Similarity=0.080 Sum_probs=63.6
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc------------ccC-cccHH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------DR------------SFG-HEYME 452 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------------~vg-~~~~~ 452 (525)
+.+|||+| ++.+|++.+++|+++|+|++.++.|+++++..|++++ |+ .++ ...-.
T Consensus 108 g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p~~~~ 187 (260)
T d2frna1 108 DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVVRTH 187 (260)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCSSGG
T ss_pred ccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCCCchH
Confidence 45999999 8888987457999999999999999999999999876 44 222 23445
Q ss_pred HHHHHHHhccCCCcEEEEEEecC
Q 043102 453 EFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
.++.++.++|||||.+.++.+..
T Consensus 188 ~~l~~a~~~l~~gG~lh~~~~~~ 210 (260)
T d2frna1 188 EFIPKALSIAKDGAIIHYHNTVP 210 (260)
T ss_dssp GGHHHHHHHEEEEEEEEEEEEEE
T ss_pred HHHHHHHhhcCCCCEEEEEeccc
Confidence 78888999999999998887653
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.87 E-value=7e-06 Score=77.90 Aligned_cols=80 Identities=8% Similarity=0.110 Sum_probs=67.7
Q ss_pred CCeehhhc------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc-------------------
Q 043102 398 VREVIFLG------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEADLERN------DR------------------- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------------------- 444 (525)
..+||||| ++.+|+. .+++|+++|.+++..+.|++.++++|+.++ |+
T Consensus 60 ~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~ 139 (227)
T d1susa1 60 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF 139 (227)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBSE
T ss_pred CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCceeE
Confidence 34999999 7788864 378999999999999999999999999876 22
Q ss_pred ---ccCcccHHHHHHHHHhccCCCcEEEEEEecCCC
Q 043102 445 ---SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPD 477 (525)
Q Consensus 445 ---~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~ 477 (525)
...+.+|..||+.+.++|+|||.++++.+....
T Consensus 140 iFiDa~k~~y~~~~e~~~~ll~~gGiii~DNvl~~G 175 (227)
T d1susa1 140 IFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNG 175 (227)
T ss_dssp EEECSCSTTHHHHHHHHHHHBCTTCCEEEETTTGGG
T ss_pred EEeccchhhhHHHHHHHHhhcCCCcEEEEccCCCCC
Confidence 123678999999999999999999999886543
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.81 E-value=5.6e-06 Score=80.33 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=59.4
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcC--CCCC------------------Cc-ccC
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEAD--LERN------------------DR-SFG 447 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~g--l~d~------------------D~-~vg 447 (525)
+..+|||+| ++.+|+.- +++|+++|+++++++.|+++++..+ ..++ |+ .+.
T Consensus 96 PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~ld 175 (264)
T d1i9ga_ 96 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLD 175 (264)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEEE
T ss_pred CCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceEEEe
Confidence 345999999 77888763 5799999999999999999987642 2222 33 223
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
..+...++..+.++|||||++++..-+
T Consensus 176 lp~P~~~l~~~~~~LkpGG~lv~~~P~ 202 (264)
T d1i9ga_ 176 MLAPWEVLDAVSRLLVAGGVLMVYVAT 202 (264)
T ss_dssp SSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred cCCHHHHHHHHHhccCCCCEEEEEeCc
Confidence 445568999999999999999886543
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.80 E-value=5.4e-06 Score=81.72 Aligned_cols=77 Identities=27% Similarity=0.334 Sum_probs=59.5
Q ss_pred ccCCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc-----
Q 043102 395 LFKVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN------------------DR----- 444 (525)
Q Consensus 395 ~f~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~----- 444 (525)
++++.+||||| ++.+|+. |+ +|+|||.|+. ...|++.++..++.++ |.
T Consensus 31 ~~~~~~VLDiGcG~G~ls~~aa~~-Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~ 108 (316)
T d1oria_ 31 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEW 108 (316)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECC
T ss_pred cCCcCEEEEEecCCcHHHHHHHHh-CCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeee
Confidence 45667999999 7778874 74 8999999975 5778888888888765 11
Q ss_pred ----ccCcccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 445 ----SFGHEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 445 ----~vg~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
..+...++.++..+.++|||||+++-+..
T Consensus 109 ~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~~~ 141 (316)
T d1oria_ 109 MGYCLFYESMLNTVLHARDKWLAPDGLIFPDRA 141 (316)
T ss_dssp CBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEE
T ss_pred eeeeeccHHHHHHHHHHHHhcCCCCeEEEeeeE
Confidence 11245789999999999999999985544
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.74 E-value=8.7e-06 Score=77.14 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=58.3
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCC-----C-------------Cc---cc-
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLER-----N-------------DR---SF- 446 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d-----~-------------D~---~v- 446 (525)
+..+|||+| +.++|+.. +.+|+|+|+|++|++.|+++++..+... . |. .+
T Consensus 73 pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~ 152 (227)
T d1g8aa_ 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA 152 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC
T ss_pred CCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEEcc
Confidence 345999999 77888864 5799999999999999999987654211 1 21 11
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEE
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
...+...+++++.+.|||||++++-.
T Consensus 153 ~~~~~~~~l~~~~~~LkpgG~lvi~~ 178 (227)
T d1g8aa_ 153 QPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccchHHHHHHHHHHhcccCCeEEEEE
Confidence 23466789999999999999998853
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.72 E-value=1.3e-05 Score=75.20 Aligned_cols=79 Identities=11% Similarity=0.149 Sum_probs=63.2
Q ss_pred Ceehhhc------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc-------------------c
Q 043102 399 REVIFLG------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEADLERN------DR-------------------S 445 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~-------------------~ 445 (525)
.+||||| ++.+|+. .+++|++||+++++++.|+++++.+|+.++ |. .
T Consensus 58 k~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~if 137 (214)
T d2cl5a1 58 SLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVF 137 (214)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEEE
T ss_pred CEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccceee
Confidence 4899999 8888875 378999999999999999999999999875 21 1
Q ss_pred c--CcccHHH--HHHHHHhccCCCcEEEEEEecCCC
Q 043102 446 F--GHEYMEE--FFGCCESLIAKDGLFVLQFISIPD 477 (525)
Q Consensus 446 v--g~~~~~~--~f~~i~r~LkpGG~~viq~i~~~~ 477 (525)
+ .+..+.. ++.++.++|||||+++++.+..+.
T Consensus 138 iD~~~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g 173 (214)
T d2cl5a1 138 LDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPG 173 (214)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEEEEEEESCCCCCC
T ss_pred ecccccccccHHHHHHHhCccCCCcEEEEeCcCCCC
Confidence 1 2344444 467788999999999999887764
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.62 E-value=2.9e-05 Score=76.60 Aligned_cols=76 Identities=18% Similarity=0.281 Sum_probs=59.9
Q ss_pred ccCCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc-----
Q 043102 395 LFKVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN------------------DR----- 444 (525)
Q Consensus 395 ~f~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~----- 444 (525)
.+++.+||||| ++.+|+. |+ +|+++|.|+ +++.|++++++.++.++ |.
T Consensus 36 ~~~~~~VLDlGcGtG~ls~~aa~~-Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~ 113 (328)
T d1g6q1_ 36 LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEW 113 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECC
T ss_pred cCCcCEEEEeCCCCCHHHHHHHHh-CCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEe
Confidence 35667999999 7777775 75 999999995 78999999999887665 11
Q ss_pred ----ccCcccHHHHHHHHHhccCCCcEEEEEE
Q 043102 445 ----SFGHEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 445 ----~vg~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
..+....+.++..+.++|||||+++-+.
T Consensus 114 ~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~ 145 (328)
T d1g6q1_ 114 MGYFLLYESMMDTVLYARDHYLVEGGLIFPDK 145 (328)
T ss_dssp CBTTBSTTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred cceeeccchhHHHHHHHHHhccCCCeEEEeee
Confidence 1234678899999999999999987443
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=2.2e-05 Score=78.14 Aligned_cols=78 Identities=10% Similarity=0.046 Sum_probs=57.0
Q ss_pred ccCCCeehhhc------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcCC----------CCC--------------
Q 043102 395 LFKVREVIFLG------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEADL----------ERN-------------- 442 (525)
Q Consensus 395 ~f~~~rVLDIG------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~gl----------~d~-------------- 442 (525)
+-+..+|||+| ++.+|+. .+.+|+++|+++++++.|++++++.+. .+.
T Consensus 96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~ 175 (324)
T d2b25a1 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED 175 (324)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccc
Confidence 44556999999 7778875 357999999999999999999986431 111
Q ss_pred ------Cc-ccCcccHHHHHHHHHhccCCCcEEEEEE
Q 043102 443 ------DR-SFGHEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 443 ------D~-~vg~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
|+ .+...+-..++..+.++|||||++++-.
T Consensus 176 ~~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv~~~ 212 (324)
T d2b25a1 176 IKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYV 212 (324)
T ss_dssp -----EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred cCCCCcceEeecCcCHHHHHHHHHHhccCCCEEEEEe
Confidence 11 1122233468899999999999998754
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.59 E-value=2.7e-05 Score=77.16 Aligned_cols=77 Identities=18% Similarity=0.149 Sum_probs=61.9
Q ss_pred CCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC------Cc--------------------
Q 043102 398 VREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN------DR-------------------- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~-------------------- 444 (525)
+.+|||+| ++.+|+. |+ +|+++|+|++.++.|+++++..|+.++ |.
T Consensus 146 g~~VLDl~~g~G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~D 224 (324)
T d2as0a2 146 GDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 224 (324)
T ss_dssp TCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeeecccCcccchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhcC
Confidence 35999999 7888875 65 899999999999999999999998654 21
Q ss_pred --cc---------CcccHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 445 --SF---------GHEYMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 445 --~v---------g~~~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
.. +.+.|..++..+.++|||||++++.+.+.
T Consensus 225 pP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 225 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 11 12357788999999999999999876554
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=97.59 E-value=2.1e-05 Score=77.95 Aligned_cols=77 Identities=13% Similarity=0.102 Sum_probs=61.0
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC--------------------------Cc
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN--------------------------DR 444 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~--------------------------D~ 444 (525)
++.+|||++ ++.+|. .+.+|+++|+|++.++.|+++++..|+++. |+
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 345999999 777776 478999999999999999999999998643 11
Q ss_pred -cc--C-------cccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 445 -SF--G-------HEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 445 -~v--g-------~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
.. + .+.+.+.++.+.++|||||.+++.+-+
T Consensus 224 P~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 224 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 11 1 345677889999999999999886544
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.49 E-value=9.2e-06 Score=76.61 Aligned_cols=73 Identities=15% Similarity=0.110 Sum_probs=51.5
Q ss_pred CCeehhhc------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcCCCC----C------------------Cc-cc
Q 043102 398 VREVIFLG------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEADLER----N------------------DR-SF 446 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~gl~d----~------------------D~-~v 446 (525)
..+||||| +..+|+. ..++|+|||+++++++.|++++++.++.. . |+ .+
T Consensus 77 g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I~~ 156 (224)
T d1i1na_ 77 GAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHV 156 (224)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhhhh
Confidence 34999999 5556654 35799999999999999999998765421 0 33 22
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEE
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
.. ..+...+.+.+.|||||++++-
T Consensus 157 ~~-~~~~ip~~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 157 GA-AAPVVPQALIDQLKPGGRLILP 180 (224)
T ss_dssp CS-BBSSCCHHHHHTEEEEEEEEEE
T ss_pred hc-chhhcCHHHHhhcCCCcEEEEE
Confidence 11 1112345678999999999983
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=6.2e-05 Score=73.48 Aligned_cols=79 Identities=20% Similarity=0.233 Sum_probs=58.4
Q ss_pred cccCCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc----
Q 043102 394 ALFKVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN------------------DR---- 444 (525)
Q Consensus 394 a~f~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~---- 444 (525)
.++++.+||||| ++.+|+. |+ +|+|+|.|+.+. .|++.+++.++.++ |.
T Consensus 32 ~~~~~~~VLDiGcG~G~lsl~aa~~-Ga~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse 109 (311)
T d2fyta1 32 HIFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISE 109 (311)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEEC
T ss_pred ccCCcCEEEEECCCCCHHHHHHHHc-CCCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEe
Confidence 445667999999 7778875 75 899999999875 56667777776654 21
Q ss_pred -----ccCcccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 445 -----SFGHEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 445 -----~vg~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
..+...++.++..+.++|||||+++-+..+
T Consensus 110 ~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~~~~ 144 (311)
T d2fyta1 110 WMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICT 144 (311)
T ss_dssp CCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEE
T ss_pred eeeeecccccccHHHHHHHHhcCCCCcEEeccccc
Confidence 112446788899999999999999865443
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.39 E-value=0.00011 Score=69.63 Aligned_cols=115 Identities=14% Similarity=0.145 Sum_probs=78.4
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc----cc----Cc
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR----SF----GH 448 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~----~v----g~ 448 (525)
.+||||| ++.+++++ +.+++..|+.+- ++ .+...++ |. ++ ..
T Consensus 83 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~-------~~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d 154 (243)
T d1kyza2 83 KSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IE-------DAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSD 154 (243)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TT-------TCCCCTTEEEEECCTTTCCCCCSCEECSSSSTTSCH
T ss_pred cEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hh-------hcccCCceEEecccccccCCCcceEEEEEEeecCCH
Confidence 3899999 78888774 899999999753 22 2222222 22 22 24
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCCcchhccc----CchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFR----LSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~----~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
++....++++++.|+|||+++|.+...++..-.... ...++..--+.+||.--+.+|+.+.+++| ||+.+..+
T Consensus 155 ~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~A-Gf~~vkv~ 231 (243)
T d1kyza2 155 EHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGA-GFQGFKVH 231 (243)
T ss_dssp HHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHH-CCSCEEEE
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHc-CCCcEEEE
Confidence 567789999999999999999998876654211000 01122222246788888999999999996 99877665
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.35 E-value=0.00015 Score=71.48 Aligned_cols=77 Identities=18% Similarity=0.268 Sum_probs=59.6
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-------Cc--------------------
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-------DR-------------------- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-------D~-------------------- 444 (525)
+.+|||+. ++.+|. .|++||+||+|+..++.|+++++..|+++. |+
T Consensus 133 ~~rVLdlf~~tG~~sl~aa~-~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilD 211 (309)
T d2igta1 133 PLKVLNLFGYTGVASLVAAA-AGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD 211 (309)
T ss_dssp CCEEEEETCTTCHHHHHHHH-TTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred CCeEEEecCCCcHHHHHHHh-CCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEEC
Confidence 34999998 777776 499999999999999999999998888653 22
Q ss_pred --cc--C--------cccHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 445 --SF--G--------HEYMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 445 --~v--g--------~~~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
.. + ..++...++.+.++|+|||.+++-+.+.
T Consensus 212 PP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s 254 (309)
T d2igta1 212 PPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS 254 (309)
T ss_dssp CCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred CCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence 11 1 2345667788999999999877766543
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=97.31 E-value=0.00013 Score=72.21 Aligned_cols=76 Identities=16% Similarity=0.211 Sum_probs=60.2
Q ss_pred CCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC---------------------------
Q 043102 397 KVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN--------------------------- 442 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~--------------------------- 442 (525)
++.+|||+. ++.+|.. |+ +|++||+|+..++.|+++++..|++..
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~-ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii 222 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 222 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCceeecCCCCcHHHHHHHhC-CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence 345999998 7777764 76 899999999999999999998888532
Q ss_pred -Cc-cc---------CcccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 443 -DR-SF---------GHEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 443 -D~-~v---------g~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
|+ .. ..+.+.+.++.+.++|+|||.+++-+-
T Consensus 223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc 264 (317)
T d2b78a2 223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 264 (317)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 22 11 134678899999999999999998554
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=97.29 E-value=0.00022 Score=63.93 Aligned_cols=75 Identities=16% Similarity=0.208 Sum_probs=55.6
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----Cc-----------------ccCc-
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN----DR-----------------SFGH- 448 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----D~-----------------~vg~- 448 (525)
++.+|||+| +++++.+ |++|++||+|+++++.|+++++..|+.++ |. -+.+
T Consensus 41 ~g~~vLDl~~G~G~~~i~a~~~-ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPP 119 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCeEEEeccccchhhhhhhhc-cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEccc
Confidence 345999999 7777775 99999999999999999999999888765 11 1111
Q ss_pred --ccHHHHHHHH--HhccCCCcEEEEEE
Q 043102 449 --EYMEEFFGCC--ESLIAKDGLFVLQF 472 (525)
Q Consensus 449 --~~~~~~f~~i--~r~LkpGG~~viq~ 472 (525)
.++...+..+ ..+|+|||+++++.
T Consensus 120 Y~~~~~~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 120 YAMDLAALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp TTSCTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred cccCHHHHHHHHHHcCCcCCCeEEEEEe
Confidence 1233444444 35899999999864
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.28 E-value=0.00018 Score=63.13 Aligned_cols=77 Identities=17% Similarity=0.135 Sum_probs=59.3
Q ss_pred ccCCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC------Cc--------------ccC
Q 043102 395 LFKVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN------DR--------------SFG 447 (525)
Q Consensus 395 ~f~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~--------------~vg 447 (525)
++++.+|||+| +++++.+ |+ +|++||++++.++.+++.++..++.++ |+ .+.
T Consensus 12 ~~~g~~vlDl~~GtG~~~iea~~r-ga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~D 90 (152)
T d2esra1 12 YFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLD 90 (152)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred hCCCCeEEEcCCccCHHHHHHHHh-CcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEec
Confidence 35566999998 7777875 76 999999999999999999999888765 33 223
Q ss_pred c----ccHHHHHHHHH--hccCCCcEEEEEE
Q 043102 448 H----EYMEEFFGCCE--SLIAKDGLFVLQF 472 (525)
Q Consensus 448 ~----~~~~~~f~~i~--r~LkpGG~~viq~ 472 (525)
+ ..+...+..+. ++|+|||.+++..
T Consensus 91 PPy~~~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 91 PPYAKETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp CSSHHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhhccchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 2 34456666664 5799999999864
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.20 E-value=0.00019 Score=68.19 Aligned_cols=114 Identities=13% Similarity=0.148 Sum_probs=76.8
Q ss_pred Ceehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc----c----cCc
Q 043102 399 REVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR----S----FGH 448 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~----~----vg~ 448 (525)
.+||||| ++.++++ .+.++|..|+.+ - +++.+..++ |. + .+.
T Consensus 83 ~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~-v-------i~~~~~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~d 154 (244)
T d1fp1d2 83 STLVDVGGGSGRNLELIISKYPLIKGINFDLPQ-V-------IENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSD 154 (244)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-H-------HTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCH
T ss_pred cEEEEecCCCcHHHHHHHHHCCCCeEEEecchh-h-------hhccCCCCCeEEecCCcccccccceEEEEehhhhhCCH
Confidence 3899999 7777776 489999999843 2 233333333 33 2 234
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCCcchhccc----CchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFR----LSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~----~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
++-.+.++++++.|+|||+++|.+...++..-.... ...+...-. -.||.-.|.+|+.+.+++| ||+.+-++
T Consensus 155 e~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~-~~~g~ert~~e~~~ll~~A-GF~~v~v~ 230 (244)
T d1fp1d2 155 EKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFI-TVGGRERTEKQYEKLSKLS-GFSKFQVA 230 (244)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHH-HHSCCCEEHHHHHHHHHHT-TCSEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHh-hCCCcCCCHHHHHHHHHHc-CCCceEEE
Confidence 556788999999999999999999887764321110 011111111 2467778999999999996 99876554
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=97.05 E-value=0.00022 Score=69.07 Aligned_cols=74 Identities=9% Similarity=0.225 Sum_probs=58.9
Q ss_pred eehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc------------
Q 043102 400 EVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR------------ 444 (525)
Q Consensus 400 rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~------------ 444 (525)
+|||+| ++.+|.+ ..++|+++|+|++-++.|+++++..+++.- |-
T Consensus 111 ~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi~~~~ 190 (274)
T d2b3ta1 111 RILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYIDEQD 190 (274)
T ss_dssp EEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCBCTTC
T ss_pred ceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhhhhhh
Confidence 899999 6666665 479999999999999999999998887422 11
Q ss_pred --------------c-c----CcccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 445 --------------S-F----GHEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 445 --------------~-v----g~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
+ . |...+..+++.+.++|+|||.+++ ++.
T Consensus 191 ~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l-Eig 238 (274)
T d2b3ta1 191 PHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL-EHG 238 (274)
T ss_dssp HHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE-ECC
T ss_pred hcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE-EEC
Confidence 0 1 235678899999999999999988 443
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.92 E-value=0.00058 Score=64.69 Aligned_cols=115 Identities=10% Similarity=0.062 Sum_probs=77.0
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc----c----cCc
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR----S----FGH 448 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~----~----vg~ 448 (525)
.+||||| ++.+++++ +.+++..|+.+ . ++.++..++ |. + ...
T Consensus 82 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-v-------i~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d 153 (244)
T d1fp2a2 82 ESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ-V-------VENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTD 153 (244)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-H-------HTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCH
T ss_pred eEEEEecCCccHHHHHHHHhCCCCeEEEecCHH-H-------HHhCcccCceEEEecCcccCCCCCcEEEEEeecccCCh
Confidence 3899999 77778775 79999999953 2 334444444 33 2 234
Q ss_pred ccHHHHHHHHHhccCCC---cEEEEEEecCCCcchhcccCchhHHh--hcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 449 EYMEEFFGCCESLIAKD---GLFVLQFISIPDERYNEFRLSSDFMK--EYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpG---G~~viq~i~~~~~~~~~~~~~~~fi~--kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
++-.+.++++++.|+|| |+++|.+...++............+. .....+|.-.+.+|+.+.++++ ||+++..+
T Consensus 154 ~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~A-Gf~~~~i~ 231 (244)
T d1fp2a2 154 KDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEA-GFQHYKIS 231 (244)
T ss_dssp HHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHT-TCCEEEEE
T ss_pred HHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHc-CCceEEEE
Confidence 55678899999999998 88888887776543211101111110 0112478888999999999996 99887654
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.82 E-value=0.00014 Score=68.00 Aligned_cols=106 Identities=8% Similarity=0.008 Sum_probs=67.2
Q ss_pred cccCCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc-ccC--
Q 043102 394 ALFKVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR-SFG-- 447 (525)
Q Consensus 394 a~f~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~-~vg-- 447 (525)
.+-++.+||||| +.-+|+-.|.+|++|+.+++.++.|++++++.|+..- |+ .++
T Consensus 75 ~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a 154 (215)
T d1jg1a_ 75 NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAG 154 (215)
T ss_dssp TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred ccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeecc
Confidence 344556999999 5566665588899999999999999999999887543 33 221
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCc---chhcccCchhHHhhcccCCCCCCCH
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDE---RYNEFRLSSDFMKEYIFPGGCLPSL 503 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~---~~~~~~~~~~fi~kYIFPGg~LPsl 503 (525)
.+..+ ..+.+.|||||++++= +...+. ....-+....|..+.+|+-.+.|-+
T Consensus 155 ~~~ip---~~l~~qL~~gGrLv~p-v~~~~~~q~l~~~~k~~~~~~~~~l~~v~fvPl~ 209 (215)
T d1jg1a_ 155 APKIP---EPLIEQLKIGGKLIIP-VGSYHLWQELLEVRKTKDGIKIKNHGGVAFVPLI 209 (215)
T ss_dssp BSSCC---HHHHHTEEEEEEEEEE-ECSSSSCEEEEEEEEETTEEEEEEEEEECCCBCB
T ss_pred cccCC---HHHHHhcCCCCEEEEE-EccCCccEEEEEEEEECCEEEEEEEccEEEEcCC
Confidence 22222 2356789999999873 222211 1111123345666666655555543
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=96.61 E-value=0.0002 Score=67.32 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=50.2
Q ss_pred ccCCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcC------------CCCC---Cc-ccC--ccc
Q 043102 395 LFKVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEAD------------LERN---DR-SFG--HEY 450 (525)
Q Consensus 395 ~f~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~g------------l~d~---D~-~vg--~~~ 450 (525)
+=++.+||||| +..+|+ .+++|++||+++++++.|+++..+.. .... |+ .++ .+.
T Consensus 68 l~~g~~VLdIG~GsGy~ta~La~-l~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~~ 146 (224)
T d1vbfa_ 68 LHKGQKVLEIGTGIGYYTALIAE-IVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPT 146 (224)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHH-HSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBSS
T ss_pred hcccceEEEecCCCCHHHHHHHH-HhcccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHHHHhhcchhh
Confidence 33455999999 666776 48899999999999999999875421 0000 44 221 222
Q ss_pred HHHHHHHHHhccCCCcEEEE
Q 043102 451 MEEFFGCCESLIAKDGLFVL 470 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~vi 470 (525)
.-+.+.+.|||||++++
T Consensus 147 ---ip~~l~~qLk~GGrLV~ 163 (224)
T d1vbfa_ 147 ---LLCKPYEQLKEGGIMIL 163 (224)
T ss_dssp ---CCHHHHHTEEEEEEEEE
T ss_pred ---hhHHHHHhcCCCCEEEE
Confidence 23456788999999987
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=96.56 E-value=0.0025 Score=61.34 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=37.6
Q ss_pred eehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC
Q 043102 400 EVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN 442 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~ 442 (525)
+|||+| ++.+|+..+++|+++|+|++-++.|+++++..++.++
T Consensus 113 ~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~ 161 (271)
T d1nv8a_ 113 TVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDR 161 (271)
T ss_dssp EEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTS
T ss_pred EEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCce
Confidence 899999 5556666789999999999999999999999888665
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=96.56 E-value=0.0021 Score=57.94 Aligned_cols=77 Identities=18% Similarity=0.147 Sum_probs=59.9
Q ss_pred cCCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC------Cc------------------
Q 043102 396 FKVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN------DR------------------ 444 (525)
Q Consensus 396 f~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------------------ 444 (525)
+++.+|||+. +++++.+ |+ +|+.||.|++.++.++++++..+..++ |+
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~sr-Ga~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf 118 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCEEEEcccccccccceeeec-chhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence 3456999998 7888886 77 799999999999999999988887655 33
Q ss_pred ---ccCcccHHHHHHHHHh--ccCCCcEEEEEEe
Q 043102 445 ---SFGHEYMEEFFGCCES--LIAKDGLFVLQFI 473 (525)
Q Consensus 445 ---~vg~~~~~~~f~~i~r--~LkpGG~~viq~i 473 (525)
-.+...+...+..+.+ +|+|||.++++.-
T Consensus 119 lDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 119 LDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp ECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred echhhhhhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 1123456778888754 6999999998653
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=0.0053 Score=55.07 Aligned_cols=75 Identities=13% Similarity=0.076 Sum_probs=58.3
Q ss_pred CCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC-----Cc------------------cc
Q 043102 397 KVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN-----DR------------------SF 446 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D~------------------~v 446 (525)
++.+|||++ +++++.+ |+ +|+.||.|++.++.++++++..++.+. |+ -.
T Consensus 43 ~~~~vLDlfaGsG~~giealsr-Ga~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSR-YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred chhhhhhhhccccceeeeEEec-CcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence 345899998 7788876 77 899999999999999999988776543 22 11
Q ss_pred CcccHHHHHHHHHh--ccCCCcEEEEEE
Q 043102 447 GHEYMEEFFGCCES--LIAKDGLFVLQF 472 (525)
Q Consensus 447 g~~~~~~~f~~i~r--~LkpGG~~viq~ 472 (525)
+...++..+..+.+ +|+|+|.++++.
T Consensus 122 ~~~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 122 RRGLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp STTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred ccchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 23457778888765 699999999974
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=96.20 E-value=0.012 Score=54.10 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=29.6
Q ss_pred HHHHhhhhcCCCCeEEeccCCC--CCCchhhhchHHHHHhhh
Q 043102 227 ASLELGHIQGRRGIWFRGAYQG--YGFHEDGLKDLSINSCMT 266 (525)
Q Consensus 227 aq~~l~~iqG~~~~~fcGay~g--~GfHEdg~~Sgl~aA~~l 266 (525)
....+...+ +++||||+++. .|+.|.++.||+.||..+
T Consensus 325 ~~~~~~~~~--g~v~~aGd~~~~~~~~~~~a~~sG~~aA~~i 364 (370)
T d2iida1 325 FSDPLTASQ--GRIYFAGEYTAQAHGWIDSTIKSGLRAARDV 364 (370)
T ss_dssp HHHHHHCCB--TTEEECSGGGSSSSSCHHHHHHHHHHHHHHH
T ss_pred cchhhhccc--CCEEEecccccCCCcccHHHHHHHHHHHHHH
Confidence 334455554 47999999975 467899999999999876
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.12 E-value=0.00078 Score=63.05 Aligned_cols=74 Identities=14% Similarity=0.178 Sum_probs=48.1
Q ss_pred ccCCCeehhhc------HHHH---HHhcC----CEEEEEcCChHHHHHHHHHHHHcCCC------------CC-------
Q 043102 395 LFKVREVIFLG------TIEV---VKRTG----CKYTGITLAEKQLKYAGIKVKEADLE------------RN------- 442 (525)
Q Consensus 395 ~f~~~rVLDIG------a~~l---A~~~G----~~VtGIdlS~eql~~Ar~r~~~~gl~------------d~------- 442 (525)
+-++++||||| +.-+ +...| .+|++||++++.++.|++++...++. |-
T Consensus 78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~ 157 (223)
T d1r18a_ 78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 157 (223)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccc
Confidence 33456999999 2223 33234 49999999999999999987543211 00
Q ss_pred ---Cc-cc--CcccHHHHHHHHHhccCCCcEEEEE
Q 043102 443 ---DR-SF--GHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 443 ---D~-~v--g~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
|+ .+ +.+..+ +.+.+.|||||++++-
T Consensus 158 ~~fD~Iiv~~a~~~~p---~~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 158 APYNAIHVGAAAPDTP---TELINQLASGGRLIVP 189 (223)
T ss_dssp CSEEEEEECSCBSSCC---HHHHHTEEEEEEEEEE
T ss_pred cceeeEEEEeechhch---HHHHHhcCCCcEEEEE
Confidence 44 22 222222 3567899999999873
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.00 E-value=0.0024 Score=58.36 Aligned_cols=77 Identities=23% Similarity=0.383 Sum_probs=57.9
Q ss_pred CCCeehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------------Cc---c
Q 043102 397 KVREVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN---------------------DR---S 445 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------------D~---~ 445 (525)
+++.|||++ +..++++ .+++|+|+|.++++++.|+++++..+-... |. .
T Consensus 23 ~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~D 102 (192)
T d1m6ya2 23 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMD 102 (192)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcceeeec
Confidence 345899998 6777776 378999999999999999999876442111 22 1
Q ss_pred cC------------cccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 446 FG------------HEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 446 vg------------~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
+| ..+....+..+.++|+|||++++-+.
T Consensus 103 lGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f 142 (192)
T d1m6ya2 103 LGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISF 142 (192)
T ss_dssp CSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred cchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecc
Confidence 22 34567889999999999999987544
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=95.94 E-value=0.0068 Score=54.65 Aligned_cols=67 Identities=18% Similarity=0.141 Sum_probs=45.6
Q ss_pred HHHHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEe-CCC--ceEeCCEEEEecChHHHHHhhcCCCCHHHHhhc
Q 043102 77 LFESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVC-GDG--SREFYNSCVMALHAPDALKILGNQATFDETRTG 153 (525)
Q Consensus 77 ~~~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~-~~g--~~e~fD~VV~A~hadqAL~lL~~~~t~~E~~iL 153 (525)
+.+.+|+++.++..+.+|..+++ ++.|.. .+| .+..+|+||+|++++++.+||.+ ..+...+.|
T Consensus 228 l~~~~g~~i~~~~~V~~I~~~~~------------~~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~-~~~~~~~~~ 294 (347)
T d2ivda1 228 LAASLGDAAHVGARVEGLAREDG------------GWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRP-LDDALAALV 294 (347)
T ss_dssp HHHHHGGGEESSEEEEEEECC--------------CCEEEEEETTEEEEEECSEEEECSCHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHhhcccccCCEEEEEEEeCC------------eEEEEEEcCCeEEEEECCEEEECCCHHHHHHhccC-CCHHHHHHh
Confidence 34555899988887777755322 223322 233 34679999999999999999984 677666666
Q ss_pred cCC
Q 043102 154 GAF 156 (525)
Q Consensus 154 g~f 156 (525)
+.+
T Consensus 295 ~~~ 297 (347)
T d2ivda1 295 AGI 297 (347)
T ss_dssp HTC
T ss_pred hcc
Confidence 643
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.50 E-value=0.0058 Score=57.75 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=37.4
Q ss_pred eehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC
Q 043102 400 EVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN 442 (525)
Q Consensus 400 rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~ 442 (525)
+||||| ++.+|++ ++++|+|+|+|++.++.|+++++..+++++
T Consensus 64 ~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~ 113 (250)
T d2h00a1 64 RGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDL 113 (250)
T ss_dssp EEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTT
T ss_pred eEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcc
Confidence 899999 5555554 699999999999999999999999888765
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=95.24 E-value=0.0059 Score=59.73 Aligned_cols=76 Identities=20% Similarity=0.278 Sum_probs=54.3
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHc--CC-CCC-------Cc-----------------
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEA--DL-ERN-------DR----------------- 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~--gl-~d~-------D~----------------- 444 (525)
.+||.|| +.++++.. ..+|+.|+|+++.++.|++..... +. ++. |+
T Consensus 79 k~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D 158 (312)
T d1uira_ 79 KRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIID 158 (312)
T ss_dssp CEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEE
T ss_pred ceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEEEe
Confidence 3999999 55555543 569999999999999999987431 21 111 22
Q ss_pred ---ccCc----c--cHHHHHHHHHhccCCCcEEEEEEec
Q 043102 445 ---SFGH----E--YMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 445 ---~vg~----~--~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
..+. . .-.+||+.|.+.|||||++++|.-+
T Consensus 159 ~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s 197 (312)
T d1uira_ 159 LTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (312)
T ss_dssp CCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred CCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCC
Confidence 1111 1 2368999999999999999998643
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.86 E-value=0.014 Score=55.89 Aligned_cols=76 Identities=20% Similarity=0.297 Sum_probs=52.6
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHc---------CCCCC------Cc-------------
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEA---------DLERN------DR------------- 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~---------gl~d~------D~------------- 444 (525)
.+||.|| +.++.+....+|+.|+|+++.++.|++..... .-..+ |+
T Consensus 74 ~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~yDvI 153 (276)
T d1mjfa_ 74 KRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFDVI 153 (276)
T ss_dssp CEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCEEEE
T ss_pred ceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCCCEE
Confidence 3999999 55555544469999999999999999765211 11122 22
Q ss_pred ------ccCcc---cHHHHHHHHHhccCCCcEEEEEEec
Q 043102 445 ------SFGHE---YMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 445 ------~vg~~---~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
..+.. .-.+||+.|.+.|+|||++++|.-.
T Consensus 154 i~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s 192 (276)
T d1mjfa_ 154 IADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS 192 (276)
T ss_dssp EEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCC
Confidence 11111 2368999999999999999998743
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=94.75 E-value=0.041 Score=48.99 Aligned_cols=75 Identities=11% Similarity=0.026 Sum_probs=58.0
Q ss_pred CCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC-------Cc----------------cc-
Q 043102 398 VREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN-------DR----------------SF- 446 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~-------D~----------------~v- 446 (525)
+.+|||+- .++++.+ |+ +|+.||.|.+-++..+++++..++.+. |. -+
T Consensus 44 ~~~vLDlFaGsG~~glEalSR-GA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred cceEeecccCccceeeeeeee-cceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 34889986 7888886 87 999999999999999999998887654 21 11
Q ss_pred ---CcccHHHHHHHHHh--ccCCCcEEEEEEe
Q 043102 447 ---GHEYMEEFFGCCES--LIAKDGLFVLQFI 473 (525)
Q Consensus 447 ---g~~~~~~~f~~i~r--~LkpGG~~viq~i 473 (525)
+...+...++.+.. +|+++|.++++.-
T Consensus 123 PPY~~~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 123 PPFHFNLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp CCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hhHhhhhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 22346777887764 7999999999753
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.19 E-value=0.014 Score=56.27 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=53.1
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHH--cCCCCC-------Cc------------------
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKE--ADLERN-------DR------------------ 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~--~gl~d~-------D~------------------ 444 (525)
.+||-|| +.++.+.. ..+|+.|+|+++.++.|++.... ..+++. |+
T Consensus 80 k~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~ 159 (285)
T d2o07a1 80 RKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDS 159 (285)
T ss_dssp CEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEEC
T ss_pred CeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEEcC
Confidence 3899999 55555543 46999999999999999998643 122222 32
Q ss_pred --ccC---cccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 445 --SFG---HEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 445 --~vg---~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
..+ .=.-.+||+.|.+.|+|||.+++|.-.
T Consensus 160 ~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 194 (285)
T d2o07a1 160 SDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 194 (285)
T ss_dssp C-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence 011 112358999999999999999999654
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.18 E-value=0.017 Score=55.83 Aligned_cols=76 Identities=16% Similarity=0.235 Sum_probs=54.1
Q ss_pred Ceehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHHHHH--cCCCCC-------Cc------------------
Q 043102 399 REVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIKVKE--ADLERN-------DR------------------ 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r~~~--~gl~d~-------D~------------------ 444 (525)
.+||=|| +.++.+..+ .+|+.|+|+++.++.|++-... ..+++. |+
T Consensus 82 k~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi~D 161 (290)
T d1xj5a_ 82 KKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVD 161 (290)
T ss_dssp CEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEEC
T ss_pred cceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEEEc
Confidence 3999999 555666545 5899999999999999997632 112221 22
Q ss_pred ---ccCc---ccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 445 ---SFGH---EYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 445 ---~vg~---~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
..+. =.-.+||+.|++.|+|||.+++|.-.
T Consensus 162 ~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 197 (290)
T d1xj5a_ 162 SSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES 197 (290)
T ss_dssp CCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred CCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 1111 12468999999999999999999643
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.17 E-value=0.014 Score=57.16 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=51.2
Q ss_pred eehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHHHHHc--CCCCC-------Cc-------------------
Q 043102 400 EVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIKVKEA--DLERN-------DR------------------- 444 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r~~~~--gl~d~-------D~------------------- 444 (525)
+||-|| +.++.+... .+|+.|+|+++.++.|++..... ++++. |+
T Consensus 109 ~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~D~~ 188 (312)
T d2b2ca1 109 RVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSS 188 (312)
T ss_dssp EEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC
T ss_pred eEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEEcCC
Confidence 899999 556666444 59999999999999999976431 12222 22
Q ss_pred -ccC---cccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 445 -SFG---HEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 445 -~vg---~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
..+ .=.-.+||+.|.+.|+|||.++.|.-.
T Consensus 189 dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s 222 (312)
T d2b2ca1 189 DPVGPAESLFGQSYYELLRDALKEDGILSSQGES 222 (312)
T ss_dssp -------------HHHHHHHHEEEEEEEEEECCC
T ss_pred CCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCC
Confidence 111 113468999999999999999999643
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=94.16 E-value=0.014 Score=56.54 Aligned_cols=76 Identities=21% Similarity=0.354 Sum_probs=54.5
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHH--cCCCCC-------Cc------------------
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKE--ADLERN-------DR------------------ 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~--~gl~d~-------D~------------------ 444 (525)
.+||-|| +.++++.. ..+|+.|+|+++.++.|++.... .++++. |+
T Consensus 91 k~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~ 170 (295)
T d1inla_ 91 KKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDS 170 (295)
T ss_dssp CEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC
T ss_pred ceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEEcC
Confidence 3899999 55666644 36999999999999999997643 223332 22
Q ss_pred ---ccCc---ccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 445 ---SFGH---EYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 445 ---~vg~---~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
..+. =+-.+|++.|.+.|+|||++++|.-+
T Consensus 171 ~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 171 TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 206 (295)
T ss_dssp ----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred CCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence 1111 12468999999999999999999653
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.12 E-value=0.02 Score=51.93 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=36.3
Q ss_pred cCCCeehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHHHHHcCCC
Q 043102 396 FKVREVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIKVKEADLE 440 (525)
Q Consensus 396 f~~~rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r~~~~gl~ 440 (525)
.++.+|||+| ++.++.+ | .+|+|||+|++.++.|+++++..++.
T Consensus 45 l~g~~vLDlg~GtG~l~i~a~~~-g~~~v~~vdi~~~~~~~a~~N~~~~~~~ 95 (201)
T d1wy7a1 45 IEGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKGK 95 (201)
T ss_dssp STTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTTS
T ss_pred CCCCEEEECcCcchHHHHHHHHc-CCCEEEEEcCcHHHHHHHHHHHHHcCCC
Confidence 3456999999 6667765 6 49999999999999999998877654
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=93.90 E-value=0.027 Score=53.86 Aligned_cols=75 Identities=24% Similarity=0.391 Sum_probs=54.4
Q ss_pred Ceehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHHHHH-cC-CCCC-------Cc------------------
Q 043102 399 REVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIKVKE-AD-LERN-------DR------------------ 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r~~~-~g-l~d~-------D~------------------ 444 (525)
.+||-|| +.++.+..+ .+|+.|+|+++.++.|++.... .+ +++. |+
T Consensus 77 ~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~D~ 156 (274)
T d1iy9a_ 77 EHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDS 156 (274)
T ss_dssp CEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEESC
T ss_pred ceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEEcC
Confidence 3899999 556665444 5999999999999999998743 12 2322 32
Q ss_pred --ccCc---ccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 445 --SFGH---EYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 445 --~vg~---~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
..+. =.-.+||+.|.+.|+|||+++.|.-
T Consensus 157 ~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~ 190 (274)
T d1iy9a_ 157 TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (274)
T ss_dssp SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred CCCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence 1111 1356999999999999999999864
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=93.40 E-value=0.029 Score=50.48 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=20.6
Q ss_pred CcccHHHHHHHHHhccCCCcEEEE
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVL 470 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~vi 470 (525)
..+...+.++.+.+.|||||.+++
T Consensus 146 ~~~~~~~vl~~l~~~L~pGG~L~l 169 (193)
T d1af7a2 146 DKTTQEDILRRFVPLLKPDGLLFA 169 (193)
T ss_dssp CHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 346678999999999999999876
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.21 E-value=0.017 Score=52.20 Aligned_cols=32 Identities=9% Similarity=-0.101 Sum_probs=27.2
Q ss_pred CCCCeEEeccCCC---CCCchhhhchHHHHHhhhc
Q 043102 236 GRRGIWFRGAYQG---YGFHEDGLKDLSINSCMTY 267 (525)
Q Consensus 236 G~~~~~fcGay~g---~GfHEdg~~Sgl~aA~~ll 267 (525)
...++||||+|+. +|.-|+|+.||++||++++
T Consensus 410 ~~~~l~fAGe~t~~~~~g~~~GA~~SG~~aA~~Il 444 (449)
T d2dw4a2 410 PIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIA 444 (449)
T ss_dssp CCCCEEECSGGGCTTSCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEcCCcCCCCceehHHHHHHHHHHHHHHH
Confidence 4578999999974 3678999999999999874
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=92.84 E-value=0.042 Score=47.50 Aligned_cols=74 Identities=15% Similarity=0.125 Sum_probs=52.6
Q ss_pred CCCeehhhc-------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC-CC--------------------Cc---c
Q 043102 397 KVREVIFLG-------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE-RN--------------------DR---S 445 (525)
Q Consensus 397 ~~~rVLDIG-------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~-d~--------------------D~---~ 445 (525)
+.++||=+| ++.+|+..|++|+++|.+++.++.|++.-...-+. +. |. .
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~ 105 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC 105 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeec
Confidence 345788788 77888888999999999999999998753211110 00 22 2
Q ss_pred cCcccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 446 FGHEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 446 vg~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
+| -+..++.+.++|+|+|++++-..
T Consensus 106 ~g---~~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 106 SG---NEKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp SC---CHHHHHHHHHHSCTTCEEEECSC
T ss_pred CC---ChHHHHHHHHHHhcCCceEEEec
Confidence 33 24678888999999999987543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=92.10 E-value=0.033 Score=49.00 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=51.5
Q ss_pred CCeehhhc-------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCC--CC------------------Cc---cc
Q 043102 398 VREVIFLG-------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLE--RN------------------DR---SF 446 (525)
Q Consensus 398 ~~rVLDIG-------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~--d~------------------D~---~v 446 (525)
.++||-+| ++.+|+..|+ +|+++|.+++.++.|++.-...-+. +. |. .+
T Consensus 29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid~v 108 (182)
T d1vj0a2 29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEAT 108 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEECS
T ss_pred CCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEeecC
Confidence 35888888 7888988898 8999999999999887652111010 00 22 33
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
|. +..++...++|+|||++++--+.
T Consensus 109 G~---~~~~~~a~~~l~~~G~iv~~G~~ 133 (182)
T d1vj0a2 109 GD---SRALLEGSELLRRGGFYSVAGVA 133 (182)
T ss_dssp SC---TTHHHHHHHHEEEEEEEEECCCC
T ss_pred Cc---hhHHHHHHHHhcCCCEEEEEeec
Confidence 43 35678888999999999765443
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=91.78 E-value=0.037 Score=50.34 Aligned_cols=41 Identities=17% Similarity=0.120 Sum_probs=33.0
Q ss_pred cCCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHc
Q 043102 396 FKVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEA 437 (525)
Q Consensus 396 f~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~ 437 (525)
+++.+|||+| ++.++.. |+ +|+|||+|+++++.|+++++..
T Consensus 47 l~Gk~VLDlGcGtG~l~i~a~~~-ga~~V~~vDid~~a~~~ar~N~~~~ 94 (197)
T d1ne2a_ 47 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGV 94 (197)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTS
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc-CCCcccccccCHHHHHHHHHccccc
Confidence 4556999999 5666664 64 7999999999999999987543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.57 E-value=0.011 Score=51.61 Aligned_cols=109 Identities=14% Similarity=0.075 Sum_probs=63.3
Q ss_pred CCCeehhhc-------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCC---CCC----------Cc---ccCcccHHH
Q 043102 397 KVREVIFLG-------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADL---ERN----------DR---SFGHEYMEE 453 (525)
Q Consensus 397 ~~~rVLDIG-------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl---~d~----------D~---~vg~~~~~~ 453 (525)
++++||-+| ++.+|+..|++|+++|.|++.++.|++.=...-+ ++. |. .++.. .+.
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~ 105 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSL-TDI 105 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCS-TTC
T ss_pred CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCC-ccc
Confidence 445888888 7788888899999999999999988764211000 000 22 22211 112
Q ss_pred HHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhc-ccCCCCCCCHHHHHHHH
Q 043102 454 FFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEY-IFPGGCLPSLSRITSAM 510 (525)
Q Consensus 454 ~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kY-IFPGg~LPsl~~i~~~~ 510 (525)
.|+...++|+|+|++++-.+ ++.... ....+++.+. -+=|.+.-+..++.+++
T Consensus 106 ~~~~~~~~l~~~G~iv~~G~--~~~~~~--~~~~~~~~k~~~i~Gs~~g~~~~~~e~l 159 (168)
T d1piwa2 106 DFNIMPKAMKVGGRIVSISI--PEQHEM--LSLKPYGLKAVSISYSALGSIKELNQLL 159 (168)
T ss_dssp CTTTGGGGEEEEEEEEECCC--CCSSCC--EEECGGGCBSCEEEECCCCCHHHHHHHH
T ss_pred hHHHHHHHhhccceEEEecc--cccccc--ccHHHHHhCCcEEEEEeeCCHHHHHHHH
Confidence 36678899999999987543 332211 1223333322 23345555665555443
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=91.17 E-value=0.07 Score=46.85 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=50.8
Q ss_pred CCeehhhc--------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc---ccCcc
Q 043102 398 VREVIFLG--------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR---SFGHE 449 (525)
Q Consensus 398 ~~rVLDIG--------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~---~vg~~ 449 (525)
.++||=.| ++.+|+..||+|++++-|++..+++++.-...-+... |. .+|
T Consensus 30 G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG-- 107 (182)
T d1v3va2 30 GETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG-- 107 (182)
T ss_dssp SCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC--
T ss_pred CCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC--
Confidence 34788766 8899998999999999999988877765321111111 22 445
Q ss_pred cHHHHHHHHHhccCCCcEEEEE
Q 043102 450 YMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 450 ~~~~~f~~i~r~LkpGG~~viq 471 (525)
.+++++..++|+|||++++-
T Consensus 108 --~~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 108 --GEFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp --HHHHHHHGGGEEEEEEEEEC
T ss_pred --chhhhhhhhhccCCCeEEee
Confidence 35788999999999999863
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.92 E-value=0.062 Score=46.27 Aligned_cols=74 Identities=15% Similarity=0.210 Sum_probs=49.4
Q ss_pred CCeehhhc-------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCC--CCCCc-------------ccCcccHHHHH
Q 043102 398 VREVIFLG-------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADL--ERNDR-------------SFGHEYMEEFF 455 (525)
Q Consensus 398 ~~rVLDIG-------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl--~d~D~-------------~vg~~~~~~~f 455 (525)
.++||=+| ++.+|+..|++|+++|.+++.++.|++.-...-+ .+.|. .+-...-...+
T Consensus 28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~ 107 (166)
T d1llua2 28 GQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVSNSAF 107 (166)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCSCHHHH
T ss_pred CCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccccchHH
Confidence 44777777 7788888899999999999999888754211101 11111 11111124567
Q ss_pred HHHHhccCCCcEEEEE
Q 043102 456 GCCESLIAKDGLFVLQ 471 (525)
Q Consensus 456 ~~i~r~LkpGG~~viq 471 (525)
+.+.++|+|||++++-
T Consensus 108 ~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 108 GQAIGMARRGGTIALV 123 (166)
T ss_dssp HHHHTTEEEEEEEEEC
T ss_pred HHHHHHhcCCcEEEEE
Confidence 8889999999999874
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.63 E-value=0.062 Score=46.77 Aligned_cols=65 Identities=17% Similarity=0.166 Sum_probs=48.6
Q ss_pred CCeehhhc--------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------------Cc---c
Q 043102 398 VREVIFLG--------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------------DR---S 445 (525)
Q Consensus 398 ~~rVLDIG--------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------------D~---~ 445 (525)
.++||-+| ++.+|+..|++|++++-|++..+.+++. |.+.- |. .
T Consensus 29 g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~----Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~ 104 (174)
T d1yb5a2 29 GESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN----GAHEVFNHREVNYIDKIKKYVGEKGIDIIIEM 104 (174)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCSEEEETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred CCEEEEEeccccccccccccccccCccccccccccccccccccc----CcccccccccccHHHHhhhhhccCCceEEeec
Confidence 34788876 7889988999999999999888887653 43211 11 3
Q ss_pred cCcccHHHHHHHHHhccCCCcEEEE
Q 043102 446 FGHEYMEEFFGCCESLIAKDGLFVL 470 (525)
Q Consensus 446 vg~~~~~~~f~~i~r~LkpGG~~vi 470 (525)
+| ...++...++|+|+|++++
T Consensus 105 ~g----~~~~~~~~~~l~~~G~iv~ 125 (174)
T d1yb5a2 105 LA----NVNLSKDLSLLSHGGRVIV 125 (174)
T ss_dssp CH----HHHHHHHHHHEEEEEEEEE
T ss_pred cc----HHHHHHHHhccCCCCEEEE
Confidence 33 3578888999999999986
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=90.24 E-value=0.26 Score=44.80 Aligned_cols=79 Identities=18% Similarity=0.266 Sum_probs=61.4
Q ss_pred cccCCCeehhhc------HHHHHH-hcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cccc--Cc
Q 043102 394 ALFKVREVIFLG------TIEVVK-RTGCKYTGITLAEKQLKYAGIKVKEADLERN----------------DRSF--GH 448 (525)
Q Consensus 394 a~f~~~rVLDIG------a~~lA~-~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~~v--g~ 448 (525)
.+++..+||||| .+-+|- .++++|+.||-+..-+.+.++-+++.|+.+- |..+ ..
T Consensus 62 ~~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~ 141 (207)
T d1jsxa_ 62 PYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF 141 (207)
T ss_dssp GGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS
T ss_pred hhhcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhh
Confidence 345556999999 444443 3689999999999999999999999998632 1111 23
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.....+++-+..+|++||++++.-
T Consensus 142 ~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 142 ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred cCHHHHHHHHHHhcCCCcEEEEEC
Confidence 468899999999999999998864
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=88.86 E-value=0.25 Score=43.43 Aligned_cols=62 Identities=11% Similarity=0.067 Sum_probs=46.6
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC--------------------------Cc---ccCcccHHHHHH
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN--------------------------DR---SFGHEYMEEFFG 456 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~--------------------------D~---~vg~~~~~~~f~ 456 (525)
++.+|+..|++|+++.-+++..+...+++++.|.+.- |. .+| ...+.
T Consensus 46 aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg----~~~~~ 121 (189)
T d1gu7a2 46 ASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVG----GKSST 121 (189)
T ss_dssp HHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSC----HHHHH
T ss_pred HHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCCceEEEECCC----cchhh
Confidence 8899998999999998787777777777777775432 11 233 34567
Q ss_pred HHHhccCCCcEEEEE
Q 043102 457 CCESLIAKDGLFVLQ 471 (525)
Q Consensus 457 ~i~r~LkpGG~~viq 471 (525)
...++|+|+|++++-
T Consensus 122 ~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 122 GIARKLNNNGLMLTY 136 (189)
T ss_dssp HHHHTSCTTCEEEEC
T ss_pred hhhhhhcCCcEEEEE
Confidence 788999999999854
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.50 E-value=0.29 Score=44.88 Aligned_cols=52 Identities=12% Similarity=0.054 Sum_probs=39.3
Q ss_pred HHHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCceEeCCEEEEecChHHHHHhh
Q 043102 78 FESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGSREFYNSCVMALHAPDALKIL 141 (525)
Q Consensus 78 ~~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~~e~fD~VV~A~hadqAL~lL 141 (525)
.+..|+++.++..+.+|..+ + .+|.|++.+|....+|+||+|+++....++.
T Consensus 217 ~~~~g~~i~~~~~v~~I~~~-----------~-~~v~v~~~~g~~~~ad~vI~a~p~~~~~~~~ 268 (383)
T d2v5za1 217 MDLLGDRVKLERPVIYIDQT-----------R-ENVLVETLNHEMYEAKYVISAIPPTLGMKIH 268 (383)
T ss_dssp HHHHGGGEEESCCEEEEECS-----------S-SSEEEEETTSCEEEESEEEECSCGGGGGGSE
T ss_pred HHHcCCeEEecCcceEEEec-----------C-CeEEEEECCCCEEECCEEEECCCHHHHhhCc
Confidence 34558888887777777442 1 2688999999989999999999987666554
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.25 E-value=0.18 Score=42.95 Aligned_cols=108 Identities=14% Similarity=0.119 Sum_probs=62.1
Q ss_pred Ceehhhc-------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC--Cc-------------ccCcccHHHHHH
Q 043102 399 REVIFLG-------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN--DR-------------SFGHEYMEEFFG 456 (525)
Q Consensus 399 ~rVLDIG-------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~--D~-------------~vg~~~~~~~f~ 456 (525)
++||=+| ++.+|+..|++|+++|.|++.++++++.-...-+... |. .+-..--...+.
T Consensus 29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 108 (168)
T d1rjwa2 29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAFQ 108 (168)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHHHH
T ss_pred CEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecCCHHHHH
Confidence 4666666 7788888899999999999999988764211001111 11 000011246688
Q ss_pred HHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhc-ccCCCCCCCHHHHHHHH
Q 043102 457 CCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEY-IFPGGCLPSLSRITSAM 510 (525)
Q Consensus 457 ~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kY-IFPGg~LPsl~~i~~~~ 510 (525)
...++|+|||++++-.+...+..+ ...+++.+- -+=|.+..+.+++.+++
T Consensus 109 ~a~~~l~~~G~i~~~g~~~~~~~~----~~~~~~~~~~~i~gs~~~~~~~~~~~l 159 (168)
T d1rjwa2 109 SAYNSIRRGGACVLVGLPPEEMPI----PIFDTVLNGIKIIGSIVGTRKDLQEAL 159 (168)
T ss_dssp HHHHHEEEEEEEEECCCCSSEEEE----EHHHHHHTTCEEEECCSCCHHHHHHHH
T ss_pred HHHHHhccCCceEecccccCCCCC----CHHHHHHCCcEEEEEeeCCHHHHHHHH
Confidence 899999999999885443222211 123333322 13345556665555543
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.17 E-value=0.32 Score=46.00 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=58.2
Q ss_pred CCeehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------------Cc---
Q 043102 398 VREVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------------DR--- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------------D~--- 444 (525)
..+|||+. +..+|+. .+..|+++|+|+..++..+++++..|+... |+
T Consensus 103 g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~DaPCS 182 (284)
T d1sqga2 103 GEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCS 182 (284)
T ss_dssp TCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECCCC
T ss_pred cceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEecccc
Confidence 35999998 6667654 247999999999999999999999987533 33
Q ss_pred ccC-------------cc-------cHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 445 SFG-------------HE-------YMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 445 ~vg-------------~~-------~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
..| .+ -....+..+.++|||||+++=-+-+..
T Consensus 183 g~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~ 234 (284)
T d1sqga2 183 ATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 234 (284)
T ss_dssp CGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred ccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc
Confidence 111 11 134568889999999999986655543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.86 E-value=0.21 Score=43.10 Aligned_cols=108 Identities=15% Similarity=0.082 Sum_probs=64.9
Q ss_pred CCeehhhc-------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcC--CCCC-----------------Cc---ccC
Q 043102 398 VREVIFLG-------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEAD--LERN-----------------DR---SFG 447 (525)
Q Consensus 398 ~~rVLDIG-------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~g--l~d~-----------------D~---~vg 447 (525)
.++||=+| +..+|+..|+ +|+.+|.+++.++.|++.-...- ..+. |. .+|
T Consensus 27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~G 106 (171)
T d1pl8a2 27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTG 106 (171)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSC
T ss_pred CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEeccC
Confidence 34777777 7778887898 89999999999999886521100 0001 22 334
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcc-cCC--CCCCCHHHHHHHHHh
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYI-FPG--GCLPSLSRITSAMSA 512 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYI-FPG--g~LPsl~~i~~~~~~ 512 (525)
. +..++...++|++||++++-.....+.. ....+++.|.+ +=| ++-....+.++.+++
T Consensus 107 ~---~~~~~~a~~~~~~gG~iv~~G~~~~~~~----~~~~~~~~k~l~i~Gs~~~~~~~~~al~li~~ 167 (171)
T d1pl8a2 107 A---EASIQAGIYATRSGGTLVLVGLGSEMTT----VPLLHAAIREVDIKGVFRYCNTWPVAISMLAS 167 (171)
T ss_dssp C---HHHHHHHHHHSCTTCEEEECSCCCSCCC----CCHHHHHHTTCEEEECCSCSSCHHHHHHHHHT
T ss_pred C---chhHHHHHHHhcCCCEEEEEecCCCCCc----cCHHHHHHCCcEEEEEeCCHhHHHHHHHHHHc
Confidence 3 4678999999999999988554322211 12344444431 111 222345666666655
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=87.41 E-value=0.17 Score=43.80 Aligned_cols=71 Identities=15% Similarity=0.110 Sum_probs=49.9
Q ss_pred CCeehhhc--------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc---ccCcc
Q 043102 398 VREVIFLG--------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR---SFGHE 449 (525)
Q Consensus 398 ~~rVLDIG--------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~---~vg~~ 449 (525)
+++||=+| ++.+|+..|++|++++.|++..+.+++.-...-+..+ |. .+|.
T Consensus 29 g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~g~- 107 (179)
T d1qora2 29 DEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGR- 107 (179)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSCG-
T ss_pred CCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCCCeEEEEeCccH-
Confidence 34777776 8889988899999999999999988765211111101 11 3343
Q ss_pred cHHHHHHHHHhccCCCcEEEEEE
Q 043102 450 YMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 450 ~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
+.++...+.|+|+|++++..
T Consensus 108 ---~~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 108 ---DTWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp ---GGHHHHHHTEEEEEEEEECC
T ss_pred ---HHHHHHHHHHhcCCeeeecc
Confidence 35778889999999987744
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=86.25 E-value=0.55 Score=38.00 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=35.7
Q ss_pred ccHHHHHHHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCceEeCCEEEEec
Q 043102 72 PNMMELFESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGSREFYNSCVMAL 132 (525)
Q Consensus 72 Pn~~~~~~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~~e~fD~VV~A~ 132 (525)
..+.+.+++.||++..+...-++.- ++...+.|...+|+++.+|.||+|+
T Consensus 66 ~~~~~~l~~~GV~~~~~~~v~~i~~-----------~~~~~~~v~~~~g~~~~~D~vi~a~ 115 (116)
T d1gesa2 66 ETLVEVMNAEGPQLHTNAIPKAVVK-----------NTDGSLTLELEDGRSETVDCLIWAI 115 (116)
T ss_dssp HHHHHHHHHHSCEEECSCCEEEEEE-----------CTTSCEEEEETTSCEEEESEEEECS
T ss_pred HHHHHHHHHCCCEEEeCCEEEEEEE-----------cCCcEEEEEECCCCEEEcCEEEEec
Confidence 3445666777888887776555533 2222477888999999999999986
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.36 E-value=0.089 Score=46.67 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=50.8
Q ss_pred Ceehhhc--------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc---ccCcccHH
Q 043102 399 REVIFLG--------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR---SFGHEYME 452 (525)
Q Consensus 399 ~rVLDIG--------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~---~vg~~~~~ 452 (525)
++||=.| ++.+|+..|++|++++-|++-.+++++.-...-+..+ |. .+|-
T Consensus 33 ~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vgg---- 108 (176)
T d1xa0a2 33 GPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGG---- 108 (176)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTT----
T ss_pred CEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCCc----
Confidence 3677777 8999999999999999999988888865322111100 22 4453
Q ss_pred HHHHHHHhccCCCcEEEEEEe
Q 043102 453 EFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq~i 473 (525)
.++++..++|+|||++++-..
T Consensus 109 ~~~~~~l~~l~~~Griv~~G~ 129 (176)
T d1xa0a2 109 RTLATVLSRMRYGGAVAVSGL 129 (176)
T ss_dssp TTHHHHHHTEEEEEEEEECSC
T ss_pred hhHHHHHHHhCCCceEEEeec
Confidence 457788899999999986443
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=85.03 E-value=0.11 Score=45.16 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=47.8
Q ss_pred CCCeehhhc--------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc---ccCcc
Q 043102 397 KVREVIFLG--------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR---SFGHE 449 (525)
Q Consensus 397 ~~~rVLDIG--------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~---~vg~~ 449 (525)
+.++||=.| ++.+|+..|++|++++-|++..+.+++. |.+.- |. .+|
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~l----Ga~~~i~~~~~~~~~~~~~g~D~v~d~~G-- 100 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLAL----GAEEAATYAEVPERAKAWGGLDLVLEVRG-- 100 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHT----TCSEEEEGGGHHHHHHHTTSEEEEEECSC--
T ss_pred CCCEEEEEeccccchhhhhhhhccccccccccccccccccccccc----ccceeeehhhhhhhhhccccccccccccc--
Confidence 344677666 7888988999999999999988887753 33211 22 345
Q ss_pred cHHHHHHHHHhccCCCcEEEEE
Q 043102 450 YMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 450 ~~~~~f~~i~r~LkpGG~~viq 471 (525)
..+....++|+|||++++-
T Consensus 101 ---~~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 101 ---KEVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp ---TTHHHHHTTEEEEEEEEEC
T ss_pred ---hhHHHHHHHHhcCCcEEEE
Confidence 2367788999999999863
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=84.96 E-value=0.73 Score=37.24 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=34.6
Q ss_pred HHHHHHHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCceEeCCEEEEec
Q 043102 74 MMELFESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGSREFYNSCVMAL 132 (525)
Q Consensus 74 ~~~~~~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~~e~fD~VV~A~ 132 (525)
+.+.+++.||++.++....++.. +....+.|.+++|++..+|.||+|+
T Consensus 70 l~~~l~~~GV~v~~~~~v~~ie~-----------~~~~~~~v~~~~G~~i~~D~Vi~AI 117 (117)
T d1aoga2 70 LTKQLTANGIQILTKENPAKVEL-----------NADGSKSVTFESGKKMDFDLVMMAI 117 (117)
T ss_dssp HHHHHHHTTCEEEESCCEEEEEE-----------CTTSCEEEEETTSCEEEESEEEECS
T ss_pred HHHHHHhcCcEEEcCCEEEEEEE-----------cCCCeEEEEECCCcEEEeCEEEEeC
Confidence 44556666899888877666643 1112467888999889999999985
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=84.94 E-value=0.75 Score=45.30 Aligned_cols=73 Identities=15% Similarity=0.045 Sum_probs=55.2
Q ss_pred CCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC--------------------Cc------
Q 043102 398 VREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN--------------------DR------ 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~--------------------D~------ 444 (525)
..+|||.. +++.|++.|+ +|+.+|+|++-++.++++++..++.+. |+
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~ 125 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 125 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHh
Confidence 34788876 7776765555 999999999999999999987766432 22
Q ss_pred -----------ccCcccHHHHHHHHHhccCCCcEEEEEE
Q 043102 445 -----------SFGHEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 445 -----------~vg~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
-.|. -..|++.+.+.++.||.+.+..
T Consensus 126 ~~~~fDvIDiDPfGs--~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 126 RHRYFHFIDLDPFGS--PMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp STTCEEEEEECCSSC--CHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCcCCcccCCCCCC--cHHHHHHHHHHhccCCEEEEEe
Confidence 1122 2578999999999999997743
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.48 E-value=0.22 Score=43.11 Aligned_cols=65 Identities=15% Similarity=0.176 Sum_probs=48.0
Q ss_pred CCeehhhc--------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------------Cc---c
Q 043102 398 VREVIFLG--------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------------DR---S 445 (525)
Q Consensus 398 ~~rVLDIG--------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------------D~---~ 445 (525)
+++||=.| ++.+|+..|++|..++-+++..+.+++. |.+.- |. .
T Consensus 26 g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~----Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~ 101 (183)
T d1pqwa_ 26 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL----GVEYVGDSRSVDFADEILELTDGYGVDVVLNS 101 (183)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT----CCSEEEETTCSTHHHHHHHHTTTCCEEEEEEC
T ss_pred CCEEEEECCCCCcccccchhhccccccceeeecccccccccccc----cccccccCCccCHHHHHHHHhCCCCEEEEEec
Confidence 34777766 8889988899999999999998888754 32211 11 3
Q ss_pred cCcccHHHHHHHHHhccCCCcEEEE
Q 043102 446 FGHEYMEEFFGCCESLIAKDGLFVL 470 (525)
Q Consensus 446 vg~~~~~~~f~~i~r~LkpGG~~vi 470 (525)
+| ...++.+.++|+++|+++.
T Consensus 102 ~g----~~~~~~~~~~l~~~G~~v~ 122 (183)
T d1pqwa_ 102 LA----GEAIQRGVQILAPGGRFIE 122 (183)
T ss_dssp CC----THHHHHHHHTEEEEEEEEE
T ss_pred cc----chHHHHHHHHhcCCCEEEE
Confidence 34 2467888899999999886
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=84.36 E-value=0.36 Score=44.50 Aligned_cols=40 Identities=25% Similarity=0.273 Sum_probs=34.2
Q ss_pred cCCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH
Q 043102 396 FKVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE 436 (525)
Q Consensus 396 f~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~ 436 (525)
-++++||||| +..+++. +.+|++|++++..++.++++..+
T Consensus 20 ~~~d~VlEIGpG~G~LT~~Ll~~-~~~v~avE~D~~l~~~l~~~~~~ 65 (235)
T d1qama_ 20 NEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVD 65 (235)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTT
T ss_pred CCCCeEEEECCCchHHHHHHHhC-cCceEEEeeccchHHHHHHHhhc
Confidence 3456999999 7788875 89999999999999999988743
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=84.29 E-value=0.87 Score=43.56 Aligned_cols=79 Identities=11% Similarity=0.099 Sum_probs=57.5
Q ss_pred CCCeehhhc------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------------Cc--
Q 043102 397 KVREVIFLG------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEADLERN----------------------DR-- 444 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------------D~-- 444 (525)
++++|||+. +..+++. ..+.|+++|+|+..+...+++++..|+... |+
T Consensus 116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDaPC 195 (313)
T d1ixka_ 116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPC 195 (313)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCT
T ss_pred ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcccc
Confidence 345999998 6677754 357999999999999999999998886432 33
Q ss_pred -ccC-------------c-------ccHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 445 -SFG-------------H-------EYMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 445 -~vg-------------~-------~~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
..| . +...+.+..+.+.|||||+++--+-+.
T Consensus 196 Sg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl 247 (313)
T d1ixka_ 196 TGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 247 (313)
T ss_dssp TSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred ccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence 111 1 123456788999999999887655544
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=84.17 E-value=0.18 Score=44.55 Aligned_cols=68 Identities=12% Similarity=0.225 Sum_probs=49.2
Q ss_pred eehhhc--------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCC-------C----CC--Cc---ccCcccHHHHH
Q 043102 400 EVIFLG--------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADL-------E----RN--DR---SFGHEYMEEFF 455 (525)
Q Consensus 400 rVLDIG--------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl-------~----d~--D~---~vg~~~~~~~f 455 (525)
+||=.| ++++|+..|++|++++-|++..+.+++.-...-+ . .. |. .|| ..++
T Consensus 34 ~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~vi~~~~~~~~~~l~~~~~~~vvD~Vg----g~~~ 109 (177)
T d1o89a2 34 EIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVG----DKVL 109 (177)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEEEEEGGGSSSCCSSCCCCEEEEEESSC----HHHH
T ss_pred cEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccccccccccHHHHHHHHhhcCCeeEEEcc----hHHH
Confidence 566555 8999999999999999999998888765221111 0 00 22 445 3578
Q ss_pred HHHHhccCCCcEEEEE
Q 043102 456 GCCESLIAKDGLFVLQ 471 (525)
Q Consensus 456 ~~i~r~LkpGG~~viq 471 (525)
.+..+.|+++|++++-
T Consensus 110 ~~~l~~l~~~Griv~~ 125 (177)
T d1o89a2 110 AKVLAQMNYGGCVAAC 125 (177)
T ss_dssp HHHHHTEEEEEEEEEC
T ss_pred HHHHHHhccccceEee
Confidence 8999999999999874
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=84.16 E-value=0.32 Score=43.31 Aligned_cols=81 Identities=14% Similarity=-0.002 Sum_probs=54.9
Q ss_pred ccCCCeehhhc-------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc---cc
Q 043102 395 LFKVREVIFLG-------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN-----------------DR---SF 446 (525)
Q Consensus 395 ~f~~~rVLDIG-------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~---~v 446 (525)
+-+.++||-+| +..+|+..|+ +|+.+|.|++.++.|++.-...-.... |. .+
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~v 102 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAV 102 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECc
Confidence 33456999998 6777776676 999999999999999876211100000 22 33
Q ss_pred Ccc------------cHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 447 GHE------------YMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 447 g~~------------~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
|.+ .-...++.+.++++|||++++--+..
T Consensus 103 G~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~ 143 (195)
T d1kola2 103 GFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYV 143 (195)
T ss_dssp CTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCC
T ss_pred cccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecC
Confidence 311 13578999999999999998765533
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=83.96 E-value=0.09 Score=46.17 Aligned_cols=68 Identities=13% Similarity=0.171 Sum_probs=48.6
Q ss_pred eehhhc--------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC------CC---------Cc---ccCcccHHH
Q 043102 400 EVIFLG--------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE------RN---------DR---SFGHEYMEE 453 (525)
Q Consensus 400 rVLDIG--------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~------d~---------D~---~vg~~~~~~ 453 (525)
.||=-| ++++|+..||+|++++-|++..+++++.-...-+. .. |. .|| ..
T Consensus 26 ~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vg----g~ 101 (167)
T d1tt7a2 26 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVG----GK 101 (167)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC----TH
T ss_pred EEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecCc----HH
Confidence 566656 89999999999999999999988887653211110 00 21 444 35
Q ss_pred HHHHHHhccCCCcEEEEE
Q 043102 454 FFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 454 ~f~~i~r~LkpGG~~viq 471 (525)
.+++..+.|+|+|++++-
T Consensus 102 ~~~~~~~~l~~~G~iv~~ 119 (167)
T d1tt7a2 102 QLASLLSKIQYGGSVAVS 119 (167)
T ss_dssp HHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHHHhccCceEEEe
Confidence 778899999999999864
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=83.77 E-value=0.066 Score=49.82 Aligned_cols=74 Identities=15% Similarity=0.245 Sum_probs=40.9
Q ss_pred Ceehhhc------HHHHH---Hh--cCCEEEEEcCChHHHHHHHHHHHHcCC--CC---C----------------Cc-c
Q 043102 399 REVIFLG------TIEVV---KR--TGCKYTGITLAEKQLKYAGIKVKEADL--ER---N----------------DR-S 445 (525)
Q Consensus 399 ~rVLDIG------a~~lA---~~--~G~~VtGIdlS~eql~~Ar~r~~~~gl--~d---~----------------D~-~ 445 (525)
.+||||| ++.+| +. ..++|+|||+.+.....+....+.-.+ .+ . |. |
T Consensus 82 k~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~~H 161 (232)
T d2bm8a1 82 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNAH 161 (232)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESSC
T ss_pred CEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcCCc
Confidence 3899999 44333 22 368999999987654433222111000 00 0 11 3
Q ss_pred cCcccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 446 FGHEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 446 vg~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
.-...+..+ ....+||+||.++++++.
T Consensus 162 ~~~~v~~~~--~~~~lLk~GG~iIveD~i 188 (232)
T d2bm8a1 162 ANTFNIMKW--AVDHLLEEGDYFIIEDMI 188 (232)
T ss_dssp SSHHHHHHH--HHHHTCCTTCEEEECSCH
T ss_pred chHHHHHHH--HHhcccCcCCEEEEEcCC
Confidence 222222333 256899999999997753
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=83.22 E-value=0.28 Score=42.85 Aligned_cols=73 Identities=18% Similarity=0.167 Sum_probs=50.2
Q ss_pred CCeehhhc-------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc---ccCcc
Q 043102 398 VREVIFLG-------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN-----------------DR---SFGHE 449 (525)
Q Consensus 398 ~~rVLDIG-------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~---~vg~~ 449 (525)
.++||=+| ++.+|+..|+ +|+++|.+++-++.|++.=...-+..+ |. .+|.
T Consensus 28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~- 106 (174)
T d1jqba2 28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGG- 106 (174)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSC-
T ss_pred CCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCC-
Confidence 44777777 7888888898 799999999999998764211001000 22 3443
Q ss_pred cHHHHHHHHHhccCCCcEEEEEEe
Q 043102 450 YMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 450 ~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
+..++.+.++|+|+|++++-..
T Consensus 107 --~~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 107 --SETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp --TTHHHHHHHHEEEEEEEEECCC
T ss_pred --HHHHHHHHHHHhcCCEEEEEee
Confidence 3567788899999999988543
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=83.21 E-value=0.75 Score=45.15 Aligned_cols=73 Identities=15% Similarity=0.259 Sum_probs=53.8
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcc-hhccc-------------------CchhHHhhcccCCCCCCCHHHHH
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDER-YNEFR-------------------LSSDFMKEYIFPGGCLPSLSRIT 507 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~-~~~~~-------------------~~~~fi~kYIFPGg~LPsl~~i~ 507 (525)
.+++..|++.=.+-|+|||++++...+.++.. +.... -..+-+..+.+|- |.||++|+.
T Consensus 185 ~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~-Y~ps~eEv~ 263 (359)
T d1m6ex_ 185 QEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQ-YTPSPTEVE 263 (359)
T ss_dssp HHHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCC-BCCCSHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEeccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCcc-ccCCHHHHH
Confidence 45788999999999999999999998876532 11000 0112345567776 889999999
Q ss_pred HHHHhcCCcEEEEE
Q 043102 508 SAMSAASRLWYNLA 521 (525)
Q Consensus 508 ~~~~~a~gl~V~~~ 521 (525)
..+++.+.|+|...
T Consensus 264 ~~ie~~gsF~i~~~ 277 (359)
T d1m6ex_ 264 AEILKEGSFLIDHI 277 (359)
T ss_dssp HHHHHTTTBCCEEE
T ss_pred HHhccCCCeeeeee
Confidence 99999888887654
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=82.36 E-value=0.41 Score=41.01 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=49.5
Q ss_pred CCCeehhhc-------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------Cc---ccCcccHHHH
Q 043102 397 KVREVIFLG-------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------------DR---SFGHEYMEEF 454 (525)
Q Consensus 397 ~~~rVLDIG-------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------D~---~vg~~~~~~~ 454 (525)
+.++||=+| ++.+|+..|++++.+|-+++..+.|++.-...-+.-. |. .+|.. ..
T Consensus 30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~---~~ 106 (168)
T d1uufa2 30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAP---HN 106 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSC---CC
T ss_pred CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecc---hh
Confidence 345777777 8889988999999999999988887754211101000 33 34432 34
Q ss_pred HHHHHhccCCCcEEEEEE
Q 043102 455 FGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 455 f~~i~r~LkpGG~~viq~ 472 (525)
++...++|++||++++-.
T Consensus 107 ~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 107 LDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp HHHHHTTEEEEEEEEECC
T ss_pred HHHHHHHHhcCCEEEEec
Confidence 566779999999998743
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=80.46 E-value=0.63 Score=40.53 Aligned_cols=73 Identities=14% Similarity=0.078 Sum_probs=51.3
Q ss_pred CCeehhhc-------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCC----C-C-------------Cc---ccCc
Q 043102 398 VREVIFLG-------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLE----R-N-------------DR---SFGH 448 (525)
Q Consensus 398 ~~rVLDIG-------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~----d-~-------------D~---~vg~ 448 (525)
.++||=+| ++.+|+..|+ +|+.+|.|++.++.|++.-...-+. + . |. .+|
T Consensus 29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G- 107 (174)
T d1e3ia2 29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG- 107 (174)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC-
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEecc-
Confidence 34788888 7888888898 7999999999998888752211110 1 1 22 334
Q ss_pred ccHHHHHHHHHhccCCC-cEEEEEEe
Q 043102 449 EYMEEFFGCCESLIAKD-GLFVLQFI 473 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpG-G~~viq~i 473 (525)
-+..++...+.|++| |++++--+
T Consensus 108 --~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 108 --TAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp --CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred --cchHHHHHHHHhhcCCeEEEecCC
Confidence 357799999999997 99987433
|