Citrus Sinensis ID: 043131

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590--
MKREHSQLDPPPPPPSCLAGPSGKGKMWEEEQTDGGGMDELLAVLGYNVRSSDMVEVAQKIEQLEEAMGAFQADGINHLATDTVHYDPSNLCTWLESMLTEFNPTMPAGLGLDPVPAPSVFDDSSFVAPAESSTITSLDFSHQRVLEEPSTSDYDLKAIPGKAMYGANNSQNSSNNYLSLSSASASSLSSSTTTRENKRLKTSEFYPPESTRPIVLADSQENGIRLVHALMACAEAVQQNNLTLAEAFVKQIRFLAVSQAGAMGKVATHFAEALARRIYGLYPQSPIDHSFSELLEMQFYETCPYLKFAHFTANQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVKNIKPDIFTVAEQEANHNGPVFLDRFTESLHYYSTMFDSLEGSVNSPENHKAMTEAYMGNQICNVVACEGADRVERHETLAQWRTRFSSAGFIPAHIGSNAYKQASMLLALFAGGDGYKVEENNGCLTLGWYTRPLIATSAWKLAAKR
cccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHcccccEEEEEcccccccccHHHHHHHHccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHccccEEEEEEEccccccccccccccccccccEEEEEEEccccccccccccHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccEEEEccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccEEEEEccEEEEEEcccEEEEEEEccccccc
ccccHHHccccccccccccccccccccccccccccccHHHHHHHHcccEccHHHHHHHHHHHHHHHHHccccccccHHcccccEEccHcHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccEEcccccccccccHHHccccccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHcccccccEEEEEccccccccccHHHHHHHHHHHHHHHHccccEEEEEEEEccHccccHHHccccccccEEEEEEHHHHHHcccccccHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccEEEEccccEEEEcccccEEEEEEcccccccc
mkrehsqldppppppsclagpsgkgkmweeeqtdgggmDELLAVLGYNVRSSDMVEVAQKIEQLEEAMGAFQadginhlatdtvhydpsnlCTWLESMLtefnptmpaglgldpvpapsvfddssfvapaesstitsldfshqrvleepstsdydlkaipgkamygannsqnssnnYLSLSSAsasslssstttrenkrlktsefyppestrpivladsqENGIRLVHALMACAEAVQQNNLTLAEAFVKQIRFLAVSQAGAMGKVATHFAEALARRIyglypqspidhsFSELLEMQFYetcpylkfahFTANQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALalrpggppafrltgigppaadntdQLQQVGWKLAQLAESIHVEFEYRGFVANSLADLDasmleikpsevdsvAVNSVFELHKLlaqpgaidKVLSVVKNIKPDIFTVAEQeanhngpvflDRFTESLHYYSTMFDslegsvnspenhkAMTEAYMGNQICNVVacegadrveRHETLAQWRTRfssagfipahigsnAYKQASMLLALFaggdgykveenngcltlgwytrplIATSAWKLAAKR
mkrehsqldppppppscLAGPSGKGKMWEEEQTDGGGMDELLAVLGYNVRSSDMVEVAQKIEQLEEAMGAFQADGINHLATDTVHYDPSNLCTWLESMLTEFNPTMPAGLGLDPVPAPSVFDDSSFVAPAESStitsldfshqrvleepstsdydlKAIPGKAMYGANNSQNSSNNYLSLSSASAsslssstttrenkrlktsefyppestrpiVLADSQENGIRLVHALMACAEAVQQNNLTLAEAFVKQIRFLAVSQAGAMGKVATHFAEALARRIYGLYPQSPIDHSFSELLEMQFYETCPYLKFAHFTANQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVKNIKPDIFTVaeqeanhngPVFLDRFTESLHYYSTMFDSLEGSVNSPENHKAMTEAYMGNQICNVVACEGADRVERHETLAQWRTRFSSAGFIPAHIGSNAYKQASMLLALFAGGDGYKVEENNGCLTLGWYTRPLIATSAWKLAAKR
MKREHSQLDppppppSCLAGPSGKGKMWEEEQTDGGGMDELLAVLGYNVRSSDMVEVAQKIEQLEEAMGAFQADGINHLATDTVHYDPSNLCTWLESMLTEFNPTMPAGLGLDPVPAPSVFDDSSFVAPAESSTITSLDFSHQRVLEEPSTSDYDLKAIPGKAMYGannsqnssnnylslssasasslsssTTTRENKRLKTSEFYPPESTRPIVLADSQENGIRLVHALMACAEAVQQNNLTLAEAFVKQIRFLAVSQAGAMGKVATHFAEALARRIYGLYPQSPIDHSFSELLEMQFYETCPYLKFAHFTANQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVKNIKPDIFTVAEQEANHNGPVFLDRFTESLHYYSTMFDSLEGSVNSPENHKAMTEAYMGNQICNVVACEGADRVERHETLAQWRTRFSSAGFIPAHIGSNAYKQASMLLALFAGGDGYKVEENNGCLTLGWYTRPLIATSAWKLAAKR
***************************************ELLAVLGYNVRSSDMVEVAQKIEQLEEAMGAFQADGINHLATDTVHYDPSNLCTWLESMLTEFNPTMPAGLGL******************************************************************************************************VLADSQENGIRLVHALMACAEAVQQNNLTLAEAFVKQIRFLAVSQAGAMGKVATHFAEALARRIYGLYPQSPIDHSFSELLEMQFYETCPYLKFAHFTANQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVKNIKPDIFTVAEQEANHNGPVFLDRFTESLHYYSTMFDSL************MTEAYMGNQICNVVACEGADRVERHETLAQWRTRFSSAGFIPAHIGSNAYKQASMLLALFAGGDGYKVEENNGCLTLGWYTRPLIATSAWKL****
*************************************MDELLAVLGYNVRSSDMV**A***********************DTVHYDPSNLCTWLE***************LDPVPAPSVFDD******************************************************************************************************LVHALMACAEAVQQNNLTLAEAFVKQIRFL********GKVATHFAEALARRIYG***********SELLEMQFYETCPYLKFAHFTANQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALA*****PPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVKNIKPDIFTVAEQEANHNGPVFLDRFTESLHYYSTMFDSLEGSVNSPENHKAMTEAYMGNQICNVVACEGADRVERHETLAQWRTRFSSAGFIPAHIGSNAYKQASMLLALFAGGDGYKVEENNGCLTLGWYTRPLIATSAWKLAA**
********************************TDGGGMDELLAVLGYNVRSSDMVEVAQKIEQLEEAMGAFQADGINHLATDTVHYDPSNLCTWLESMLTEFNPTMPAGLGLDPVPAPSVFDDSSFVAPAESSTITSLDFSHQRVLEEPSTSDYDLKAIPGKAMYGANNSQNSSNN***********************LKTSEFYPPESTRPIVLADSQENGIRLVHALMACAEAVQQNNLTLAEAFVKQIRFLAVSQAGAMGKVATHFAEALARRIYGLYPQSPIDHSFSELLEMQFYETCPYLKFAHFTANQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVKNIKPDIFTVAEQEANHNGPVFLDRFTESLHYYSTMFDSLEGSVNSPENHKAMTEAYMGNQICNVVACEGADRVERHETLAQWRTRFSSAGFIPAHIGSNAYKQASMLLALFAGGDGYKVEENNGCLTLGWYTRPLIATSAWKLAAKR
************************************GMDELLAVLGYNVRSSDMVEVAQKIEQLEEAMGAFQADGINHLATDTVHYDPSNLCTWLESMLTEFNPT************************************************YDLKAIPGKAMYGA*********************************************PIVLADSQENGIRLVHALMACAEAVQQNNLTLAEAFVKQIRFLAVSQAGAMGKVATHFAEALARRIYGLYPQSPIDHSFSELLEMQFYETCPYLKFAHFTANQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVKNIKPDIFTVAEQEANHNGPVFLDRFTESLHYYSTMFDSLEGSVNSPENHKAMTEAYMGNQICNVVACEGADRVERHETLAQWRTRFSSAGFIPAHIGSNAYKQASMLLALFAGGDGYKVEENNGCLTLGWYTRPLIATSAWKLA***
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MKREHSQLDPPPPPPSCLAGPSGKGKMWEEEQTDGGGMDELLAVLGYNVRSSDxxxxxxxxxxxxxxxxxxxxxGINHLATDTVHYDPSNLCTWLESMLTEFNPTMPAGLGLDPVPAPSVFDDSSFVAPAESSTITSLDFSHQRVLEEPSTSDYDLKAIPGKAMYGANNSQNSSNNYLSLSSASASSLSSSTTTRENKRLKTSEFYPPESTRPIVLADSQENGIRLVHALMACAEAVQQNNLTLAEAFVKQIRFLAVSQAGAMGKVATHFAEALARRIYGLYPQSPIDHSFSELLEMQFYETCPYLKFAHFTANQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVKNIKPDIFTVAEQEANHNGPVFLDRFTESLHYYSTMFDSLEGSVNSPENHKAMTEAYMGNQICNVVACEGADRVERHETLAQWRTRFSSAGFIPAHIGSNAYKQASMLLALFAGGDGYKVEENNGCLTLGWYTRPLIATSAWKLAAKR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query592 2.2.26 [Sep-21-2011]
Q8S4W7590 DELLA protein GAI1 OS=Vit yes no 0.959 0.962 0.662 0.0
Q6EI05587 DELLA protein GAIP-B OS=C N/A no 0.957 0.965 0.682 0.0
Q6EI06579 DELLA protein GAIP OS=Cuc N/A no 0.942 0.963 0.676 0.0
Q5BN22579 DELLA protein RGA2 OS=Bra N/A no 0.939 0.960 0.643 0.0
Q9SLH3587 DELLA protein RGA OS=Arab yes no 0.908 0.916 0.650 0.0
Q9LQT8533 DELLA protein GAI OS=Arab no no 0.863 0.958 0.660 0.0
Q5BN23573 DELLA protein RGA1 OS=Bra N/A no 0.940 0.972 0.637 0.0
Q7Y1B6588 DELLA protein GAI OS=Sola N/A no 0.900 0.906 0.608 0.0
Q84TQ7537 DELLA protein GAI OS=Goss N/A no 0.890 0.981 0.603 0.0
Q8GXW1547 DELLA protein RGL2 OS=Ara no no 0.900 0.974 0.547 1e-177
>sp|Q8S4W7|GAI1_VITVI DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1 Back     alignment and function desciption
 Score =  791 bits (2044), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/602 (66%), Positives = 459/602 (76%), Gaps = 34/602 (5%)

Query: 1   MKREHSQLDPPPPPPSCLAGPSGKGKMWEEEQTDGGGMDELLAVLGYNVRSSDMVEVAQK 60
           MKRE+      P  P+C   P+GKGKMW+ +     GMDELLAVLGYNV++SDM EVAQK
Sbjct: 1   MKREYHH----PHHPTCSTSPTGKGKMWDADPQQDAGMDELLAVLGYNVKASDMAEVAQK 56

Query: 61  IEQLEEAMGAFQADGINHLATDTVHYDPSNLCTWLESMLTEFNPTMPAGLGLDPVPAPSV 120
           +EQLEE +   Q DG++HLA++TVHY+PS+L  WL SML+EFNPT            P+ 
Sbjct: 57  LEQLEEVIVNAQEDGLSHLASETVHYNPSDLSNWLGSMLSEFNPT------------PNC 104

Query: 121 FDDSSFVAPAESSTITSLDFSH--QRVLEEPS-----TSDYDLKAIPGKAMYGANNSQNS 173
             D+ F+ P     I+ LD+++   +  +EPS     + DYDLKAIPGKA+Y        
Sbjct: 105 ALDNPFLPP-----ISPLDYTNCSTQPKQEPSIFDSPSLDYDLKAIPGKALYSHIEQPPQ 159

Query: 174 SNNYLSLSSASASSLSSSTTTRENKRLKTSEFY--PPESTRPIVLADSQENGIRLVHALM 231
                 L       L  +T+   N        +  P ES RP+VL DSQE GIRLVH LM
Sbjct: 160 QPPAPPLYQRDNKRLKPTTSATANSVSSVIGGWGVPTESARPVVLVDSQETGIRLVHTLM 219

Query: 232 ACAEAVQQNNLTLAEAFVKQIRFLAVSQAGAMGKVATHFAEALARRIYGLYPQSPIDHSF 291
           ACAEAVQQ NL LAEA VKQI FLAVSQAGAM KVAT+FAE LARRIY LYP  P+D SF
Sbjct: 220 ACAEAVQQENLKLAEALVKQIGFLAVSQAGAMRKVATYFAEGLARRIYRLYPDKPLDSSF 279

Query: 292 SELLEMQFYETCPYLKFAHFTANQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRP 351
           S++L+M FYETCPYLKFAHFTANQAILEAF+GK+RVHVIDFSM QGMQWPALMQALALRP
Sbjct: 280 SDILQMHFYETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMKQGMQWPALMQALALRP 339

Query: 352 GGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADLDASMLEI 411
           GGPP+FRLTGIGPP+ DNTD L +VGWKLAQLAE+IHVEFEYRGFVANSLADLDASMLE+
Sbjct: 340 GGPPSFRLTGIGPPSTDNTDHLHEVGWKLAQLAETIHVEFEYRGFVANSLADLDASMLEL 399

Query: 412 KPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVKNIKPDIFTVAEQEANHNGPVFLDRFT 471
           +  E  SVAVNSVFELH LLA+PG I++VLS VK++KPDI T+ EQEANHNGPVFLDRFT
Sbjct: 400 RDGE--SVAVNSVFELHSLLARPGGIERVLSAVKDMKPDIVTIVEQEANHNGPVFLDRFT 457

Query: 472 ESLHYYSTMFDSLEGSVNSPEN--HKAMTEAYMGNQICNVVACEGADRVERHETLAQWRT 529
           ESLHYYST+FDSLEG   SP N   K M+E Y+G QICNVVACEG +RVERHETLAQWR 
Sbjct: 458 ESLHYYSTLFDSLEGCGVSPVNTQDKLMSEVYLGQQICNVVACEGPERVERHETLAQWRA 517

Query: 530 RFSSAGFIPAHIGSNAYKQASMLLALFAGGDGYKVEENNGCLTLGWYTRPLIATSAWKLA 589
           R  SAGF P ++GSNA+KQASMLLALFAGGDGY+VEENNGCL LGW+TRPLIATSAW+LA
Sbjct: 518 RLGSAGFDPVNLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQLA 577

Query: 590 AK 591
            K
Sbjct: 578 NK 579
Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Vitis vinifera (taxid: 29760)
>sp|Q6EI05|GAIPB_CUCMA DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB PE=2 SV=1 Back     alignment and function description
>sp|Q6EI06|GAIP_CUCMA DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=2 SV=1 Back     alignment and function description
>sp|Q5BN22|RGA2_BRACM DELLA protein RGA2 OS=Brassica campestris GN=RGA2 PE=3 SV=1 Back     alignment and function description
>sp|Q9SLH3|RGA_ARATH DELLA protein RGA OS=Arabidopsis thaliana GN=RGA PE=1 SV=1 Back     alignment and function description
>sp|Q9LQT8|GAI_ARATH DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1 Back     alignment and function description
>sp|Q5BN23|RGA1_BRACM DELLA protein RGA1 OS=Brassica campestris GN=RGA1 PE=1 SV=1 Back     alignment and function description
>sp|Q7Y1B6|GAI_SOLLC DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1 Back     alignment and function description
>sp|Q84TQ7|GAI_GOSHI DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=2 SV=1 Back     alignment and function description
>sp|Q8GXW1|RGL2_ARATH DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query592
109156718616 DELLA protein GAI [Gossypium barbadense] 0.956 0.918 0.662 0.0
384381395613 GAI-like protein [Juglans regia] 0.981 0.947 0.699 0.0
224108309602 DELLA domain GRAS family transcription f 0.932 0.916 0.673 0.0
238821220616 GAI/RGA protein [Gossypium hirsutum] 0.956 0.918 0.659 0.0
224101865600 DELLA domain GRAS family transcription f 0.956 0.943 0.697 0.0
399936315603 DELLA domain GRAS family transcription f 0.959 0.941 0.690 0.0
255573746609 DELLA protein GAIP-B, putative [Ricinus 0.978 0.950 0.679 0.0
449465755586 PREDICTED: DELLA protein GAIP-B-like [Cu 0.956 0.965 0.691 0.0
449519298586 PREDICTED: LOW QUALITY PROTEIN: DELLA pr 0.956 0.965 0.69 0.0
225424291590 PREDICTED: DELLA protein GAI1 isoform 1 0.959 0.962 0.662 0.0
>gi|109156718|gb|ABG26370.1| DELLA protein GAI [Gossypium barbadense] Back     alignment and taxonomy information
 Score =  840 bits (2170), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/635 (66%), Positives = 482/635 (75%), Gaps = 69/635 (10%)

Query: 1   MKREHSQLDPPPPPPSCLAGPS-GKGKMWEEE--QTDGGGMDELLAVLGYNVRSSDMVEV 57
           MKR+H+ L P P P S    PS GK K+W+EE  Q D G MDELLAVLGY V++SDM EV
Sbjct: 1   MKRDHNHLQPNPDPSSLRGAPSTGKAKVWDEESAQQDCG-MDELLAVLGYKVKTSDMAEV 59

Query: 58  AQKIEQLEEAMGAFQADGINHLATDTVHYDPSNLCTWLESMLTEFNPTMPAGLGLDPVPA 117
           AQK+EQLEE M   Q DGI+HLA++TVHY+PS+L TWLESML+E NP             
Sbjct: 60  AQKLEQLEEVMCNVQDDGISHLASETVHYNPSDLSTWLESMLSELNP------------- 106

Query: 118 PSVFD------------DSSFVAPAESSTITSLDF---------SHQRVLEEPSTSDYDL 156
           PS FD            D SF+ PAESST+T+LDF         S Q++ EE S SDYDL
Sbjct: 107 PSTFDPFGAAGTAAAALDDSFLVPAESSTLTTLDFDNINRKHQKSGQQIFEEASCSDYDL 166

Query: 157 KAIPGKAMYGANNSQNSSNNYLSLSSASASSLSSSTTTRENKRLKTSEF----------- 205
           KAIPGKA+Y       + +         +SS S+ T  +  KR K++             
Sbjct: 167 KAIPGKAIYSQKTQPQTHD---------SSSSSTPTNVKSEKRFKSTSGPPSPSDIFPPP 217

Query: 206 ---------YPPESTRPIVLADSQENGIRLVHALMACAEAVQQNNLTLAEAFVKQIRFLA 256
                     P  STRP+VL DSQENGIRLVHALMACAEAVQQNNL LAEA VKQI FLA
Sbjct: 218 PPPAAASYGIPTASTRPVVLVDSQENGIRLVHALMACAEAVQQNNLNLAEALVKQIGFLA 277

Query: 257 VSQAGAMGKVATHFAEALARRIYGLYPQSPIDHSFSELLEMQFYETCPYLKFAHFTANQA 316
           +SQAGAM KVAT+FAEALARRIY  YPQ+P+DHSFS++L M FYETCPYLKFAHFTANQA
Sbjct: 278 ISQAGAMRKVATYFAEALARRIYRFYPQNPLDHSFSDVLHMHFYETCPYLKFAHFTANQA 337

Query: 317 ILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQV 376
           ILEAF+GK+RVHVIDFSMNQGMQWPALMQALALR GGPPAFRLTG GPP+ DN+D LQ+V
Sbjct: 338 ILEAFEGKKRVHVIDFSMNQGMQWPALMQALALRVGGPPAFRLTGFGPPSHDNSDHLQEV 397

Query: 377 GWKLAQLAESIHVEFEYRGFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGA 436
           G KLAQ A+ IHVEFEYRGFVANSLADLDASML+++PSEV++VAVNSVFELHKLLA+PGA
Sbjct: 398 GCKLAQFAKKIHVEFEYRGFVANSLADLDASMLDLRPSEVEAVAVNSVFELHKLLARPGA 457

Query: 437 IDKVLSVVKNIKPDIFTVAEQEANHNGPVFLDRFTESLHYYSTMFDSLEGSVNSPENHKA 496
           IDKV SVVK +KP++ T+ EQEANHNGPVFLDRFTESLH+YST+FDSLEGSV+S +  K 
Sbjct: 458 IDKVFSVVKQMKPELVTIVEQEANHNGPVFLDRFTESLHFYSTLFDSLEGSVSSQD--KV 515

Query: 497 MTEAYMGNQICNVVACEGADRVERHETLAQWRTRFSSAGFIPAHIGSNAYKQASMLLALF 556
           M+E Y+G QICNVVACEG DR+ERHE+L QWR R S+AGF P H+GSNA+KQASMLLALF
Sbjct: 516 MSEVYLGKQICNVVACEGVDRIERHESLTQWRNRLSTAGFSPVHLGSNAFKQASMLLALF 575

Query: 557 AGGDGYKVEENNGCLTLGWYTRPLIATSAWKLAAK 591
           AGGDGY VEENNGCL LGW+ RPLI TSAWKL  K
Sbjct: 576 AGGDGYGVEENNGCLMLGWHNRPLITTSAWKLTNK 610

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|384381395|gb|AEE69074.2| GAI-like protein [Juglans regia] Back     alignment and taxonomy information
>gi|224108309|ref|XP_002314799.1| DELLA domain GRAS family transcription factor GAI/RGA1 [Populus trichocarpa] gi|222863839|gb|EEF00970.1| DELLA domain GRAS family transcription factor GAI/RGA1 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|238821220|gb|ACR58455.1| GAI/RGA protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|224101865|ref|XP_002312450.1| DELLA domain GRAS family transcription factor, GA insensitive (GAI), GA1-3 1 (RGA1) repressor protein [Populus trichocarpa] gi|222852270|gb|EEE89817.1| DELLA domain GRAS family transcription factor, GA insensitive (GAI), GA1-3 1 (RGA1) repressor protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|399936315|gb|AFP58844.1| DELLA domain GRAS family transcription factor GAI [Populus tomentosa] Back     alignment and taxonomy information
>gi|255573746|ref|XP_002527794.1| DELLA protein GAIP-B, putative [Ricinus communis] gi|223532829|gb|EEF34604.1| DELLA protein GAIP-B, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449465755|ref|XP_004150593.1| PREDICTED: DELLA protein GAIP-B-like [Cucumis sativus] gi|413915336|emb|CBX88046.1| gibberellin DELLA protein, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|449519298|ref|XP_004166672.1| PREDICTED: LOW QUALITY PROTEIN: DELLA protein GAIP-B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225424291|ref|XP_002284648.1| PREDICTED: DELLA protein GAI1 isoform 1 [Vitis vinifera] gi|75159681|sp|Q8S4W7.1|GAI1_VITVI RecName: Full=DELLA protein GAI1; AltName: Full=Gibberellic acid-insensitive mutant protein 1; AltName: Full=VvGAI1 gi|20334379|gb|AAM19210.1|AF378125_1 GAI-like protein 1 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query592
TAIR|locus:2006747533 GAI "GIBBERELLIC ACID INSENSIT 0.755 0.838 0.707 1.7e-191
TAIR|locus:2005516587 RGA1 "REPRESSOR OF GA1-3 1" [A 0.967 0.976 0.626 1.7e-187
TAIR|locus:2099624547 RGL2 "RGA-like 2" [Arabidopsis 0.641 0.694 0.676 3.3e-158
TAIR|locus:2201557511 RGL1 "RGA-like 1" [Arabidopsis 0.648 0.751 0.657 8.8e-158
TAIR|locus:2157477523 RGL3 "RGA-like protein 3" [Ara 0.667 0.755 0.616 8.4e-149
TAIR|locus:2164783490 PAT1 "AT5G48150" [Arabidopsis 0.589 0.712 0.376 2.4e-60
TAIR|locus:2044973413 SCL21 "AT2G04890" [Arabidopsis 0.619 0.888 0.346 3.2e-58
TAIR|locus:2080345653 SCR "SCARECROW" [Arabidopsis t 0.596 0.540 0.362 3.4e-54
TAIR|locus:2008076597 SCL5 "AT1G50600" [Arabidopsis 0.594 0.589 0.351 5.5e-54
TAIR|locus:2008086482 SCL3 "AT1G50420" [Arabidopsis 0.347 0.427 0.354 4.4e-53
TAIR|locus:2006747 GAI "GIBBERELLIC ACID INSENSITIVE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1613 (572.9 bits), Expect = 1.7e-191, Sum P(2) = 1.7e-191
 Identities = 332/469 (70%), Positives = 372/469 (79%)

Query:   129 PAESSTITSLDFSHQRVLEEPSTS-DYDLKAIPGKAMYGXXXXXXXXXXXXXXXXXXXXX 187
             PAE    T LD S    L  PS++ +YDLKAIPG A+                       
Sbjct:    77 PAE--LYTWLD-SMLTDLNPPSSNAEYDLKAIPGDAILNQFAIDSASSSNQGGGGDTY-- 131

Query:   188 XXXXTTTRENKRLKTSEFY------PPESTRPIVLADSQENGIRLVHALMACAEAVQQNN 241
                  TT  NKRLK S           ESTR +VL DSQENG+RLVHAL+ACAEAVQ+ N
Sbjct:   132 -----TT--NKRLKCSNGVVETTTATAESTRHVVLVDSQENGVRLVHALLACAEAVQKEN 184

Query:   242 LTLAEAFVKQIRFLAVSQAGAMGKVATHFAEALARRIYGLYP-QSPIDHSFSELLEMQFY 300
             LT+AEA VKQI FLAVSQ GAM KVAT+FAEALARRIY L P QSPIDHS S+ L+M FY
Sbjct:   185 LTVAEALVKQIGFLAVSQIGAMRKVATYFAEALARRIYRLSPSQSPIDHSLSDTLQMHFY 244

Query:   301 ETCPYLKFAHFTANQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLT 360
             ETCPYLKFAHFTANQAILEAF GK+RVHVIDFSM+QG+QWPALMQALALRPGGPP FRLT
Sbjct:   245 ETCPYLKFAHFTANQAILEAFQGKKRVHVIDFSMSQGLQWPALMQALALRPGGPPVFRLT 304

Query:   361 GIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADLDASMLEIKPSEVDSVA 420
             GIGPPA DN D L +VG KLA LAE+IHVEFEYRGFVAN+LADLDASMLE++PSE++SVA
Sbjct:   305 GIGPPAPDNFDYLHEVGCKLAHLAEAIHVEFEYRGFVANTLADLDASMLELRPSEIESVA 364

Query:   421 VNSVFELHKLLAQPGAIDKVLSVVKNIKPDIFTVAEQEANHNGPVFLDRFTESLHYYSTM 480
             VNSVFELHKLL +PGAIDKVL VV  IKP+IFTV EQE+NHN P+FLDRFTESLHYYST+
Sbjct:   365 VNSVFELHKLLGRPGAIDKVLGVVNQIKPEIFTVVEQESNHNSPIFLDRFTESLHYYSTL 424

Query:   481 FDSLEGSVNSPENHKAMTEAYMGNQICNVVACEGADRVERHETLAQWRTRFSSAGFIPAH 540
             FDSLEG V S ++ K M+E Y+G QICNVVAC+G DRVERHETL+QWR RF SAGF  AH
Sbjct:   425 FDSLEG-VPSGQD-KVMSEVYLGKQICNVVACDGPDRVERHETLSQWRNRFGSAGFAAAH 482

Query:   541 IGSNAYKQASMLLALFAGGDGYKVEENNGCLTLGWYTRPLIATSAWKLA 589
             IGSNA+KQASMLLALF GG+GY+VEE++GCL LGW+TRPLIATSAWKL+
Sbjct:   483 IGSNAFKQASMLLALFNGGEGYRVEESDGCLMLGWHTRPLIATSAWKLS 531
GO:0005634 "nucleus" evidence=ISM;ISS;IDA;TAS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS
GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS
GO:0009938 "negative regulation of gibberellic acid mediated signaling pathway" evidence=IMP;TAS
GO:0005515 "protein binding" evidence=IPI
GO:0010233 "phloem transport" evidence=IMP
GO:0009651 "response to salt stress" evidence=IGI
GO:0009723 "response to ethylene stimulus" evidence=IGI;RCA
GO:0009737 "response to abscisic acid stimulus" evidence=IGI;RCA
GO:0042538 "hyperosmotic salinity response" evidence=IGI;RCA
GO:0010029 "regulation of seed germination" evidence=IGI
GO:2000033 "regulation of seed dormancy process" evidence=IGI
GO:0009739 "response to gibberellin stimulus" evidence=IEP
GO:0010187 "negative regulation of seed germination" evidence=IGI
GO:0010218 "response to far red light" evidence=IEP
GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IGI
GO:0009863 "salicylic acid mediated signaling pathway" evidence=IGI;RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IGI;RCA
GO:0009845 "seed germination" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010325 "raffinose family oligosaccharide biosynthetic process" evidence=RCA
GO:0048444 "floral organ morphogenesis" evidence=RCA
GO:0006808 "regulation of nitrogen utilization" evidence=IMP
TAIR|locus:2005516 RGA1 "REPRESSOR OF GA1-3 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099624 RGL2 "RGA-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201557 RGL1 "RGA-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157477 RGL3 "RGA-like protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164783 PAT1 "AT5G48150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044973 SCL21 "AT2G04890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080345 SCR "SCARECROW" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008076 SCL5 "AT1G50600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008086 SCL3 "AT1G50420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7Y1B6GAI_SOLLCNo assigned EC number0.60810.90030.9064N/Ano
Q5BN22RGA2_BRACMNo assigned EC number0.64320.93910.9602N/Ano
Q6EI05GAIPB_CUCMANo assigned EC number0.68210.95770.9659N/Ano
Q5BN23RGA1_BRACMNo assigned EC number0.63740.94080.9720N/Ano
Q9SLH3RGA_ARATHNo assigned EC number0.65060.90870.9165yesno
Q6EI06GAIP_CUCMANo assigned EC number0.67610.94250.9637N/Ano
Q9ST59RHT1_WHEATNo assigned EC number0.53310.88850.8443N/Ano
Q84TQ7GAI_GOSHINo assigned EC number0.60370.89020.9813N/Ano
Q8S4W7GAI1_VITVINo assigned EC number0.66270.95940.9627yesno
Q9ST48DWRF8_MAIZENo assigned EC number0.56020.91380.8587N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query592
pfam03514372 pfam03514, GRAS, GRAS family transcription factor 1e-173
pfam1204174 pfam12041, DELLA, Transcriptional regulator DELLA 2e-33
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor Back     alignment and domain information 
 Score =  496 bits (1278), Expect = e-173
 Identities = 183/377 (48%), Positives = 241/377 (63%), Gaps = 20/377 (5%)

Query: 226 LVHALMACAEAVQQNNLTLAEAFVKQIRFLAVSQAGAMGKVATHFAEALARRIYGLYP-- 283
           LVH L+ACAEAV   +L+LA+A + ++  LA      M ++A +F EALA R+       
Sbjct: 1   LVHLLLACAEAVSSGDLSLAQAILARLNQLASPAGDPMQRLAAYFTEALAARLARSGSSI 60

Query: 284 -------QSPIDHSFSELLEMQ-FYETCPYLKFAHFTANQAILEAFDGKRRVHVIDFSMN 335
                   S    S   L   + FYE  PYLKF HFTANQAILEAF+G+ RVH+IDF + 
Sbjct: 61  YSALPPSPSTPSDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFEGEERVHIIDFDIG 120

Query: 336 QGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRG 395
           QG+QWP+L+QALA RPGGPP  R+TGIG P   + ++L++ G +LAQ A+S+ V FE+  
Sbjct: 121 QGLQWPSLIQALASRPGGPPHLRITGIGSPQFSSAEELEETGDRLAQFADSLGVPFEFNP 180

Query: 396 FVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDK--VLSVVKNIKPDIFT 453
            VA  L DLD  ML+++P E   +AVN VF LH+LL +  +++    L +VK++ P + T
Sbjct: 181 LVAKRLEDLDLEMLDVRPGEA--LAVNCVFALHRLLDESVSLESPTFLRLVKSLNPKVVT 238

Query: 454 VAEQEANHNGPVFLDRFTESLHYYSTMFDSLEGSVNSPENHKAMT---EAYMGNQICNVV 510
           + EQEANHN   FL RF E+LHYYS +FDSLE     P + +         +G +I NVV
Sbjct: 239 LVEQEANHNSAPFLARFVEALHYYSALFDSLE--ATLPRDSEERRKVERELLGREIVNVV 296

Query: 511 ACEGADRVERHETLAQWRTRFSSAGFIPAHIGSNAYKQASMLLALFAGGDGYKVEENNGC 570
           ACEGA+RVERHET  +WR R   AGF P  +   A KQA +LL L+   DGY+VEE+NG 
Sbjct: 297 ACEGAERVERHETFGKWRERMRRAGFRPVPLSEFAVKQAKLLLRLY-YVDGYRVEEDNGS 355

Query: 571 LTLGWYTRPLIATSAWK 587
           L LGW  RPL+A SAW+
Sbjct: 356 LVLGWKGRPLVAASAWR 372

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372
>gnl|CDD|221390 pfam12041, DELLA, Transcriptional regulator DELLA protein N terminal Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 592
PF03514374 GRAS: GRAS domain family; InterPro: IPR005202 Sequ 100.0
PF1204173 DELLA: Transcriptional regulator DELLA protein N t 100.0
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 96.45
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 94.0
TIGR00740239 methyltransferase, putative. A simple BLAST search 93.78
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 92.93
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 92.48
PF12847112 Methyltransf_18: Methyltransferase domain; PDB: 3G 91.09
PLN02233261 ubiquinone biosynthesis methyltransferase 90.92
PRK06202232 hypothetical protein; Provisional 87.76
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 86.39
PF09243274 Rsm22: Mitochondrial small ribosomal subunit Rsm22 83.92
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 83.71
PF13649101 Methyltransf_25: Methyltransferase domain; PDB: 3B 83.15
PRK08317241 hypothetical protein; Provisional 82.51
PLN02396322 hexaprenyldihydroxybenzoate methyltransferase 82.44
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 82.4
smart00138264 MeTrc Methyltransferase, chemotaxis proteins. Meth 81.99
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 81.46
PTZ00098263 phosphoethanolamine N-methyltransferase; Provision 80.62
PF03291331 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 80.01
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-109  Score=879.96  Aligned_cols=359  Identities=51%  Similarity=0.897  Sum_probs=335.5

Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHhhccccCCCCchhhHHHHHHHHHHHHHhcCCCCC-----CCCC---CHHHH--H
Q 043131          226 LVHALMACAEAVQQNNLTLAEAFVKQIRFLAVSQAGAMGKVATHFAEALARRIYGLYPQS-----PIDH---SFSEL--L  295 (592)
Q Consensus       226 Lv~LLlaCAeAV~~gd~~~A~~lL~~L~~las~~g~~~qRvA~yFaeAL~~Rl~~~~p~~-----~~~~---s~~~~--l  295 (592)
                      |++||++||+||+.||.+.|+.+|++|++++++.|+++||||+||++||++||.+..++.     +...   ...+.  .
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a   80 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA   80 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence            689999999999999999999999999999999999999999999999999999955431     1111   12222  2


Q ss_pred             HHHHHhhCChhHHHHHHHHHHHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHH
Q 043131          296 EMQFYETCPYLKFAHFTANQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQ  375 (592)
Q Consensus       296 ~~~fye~~P~lkFAhftANQAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~e  375 (592)
                      +..||+.|||+||||||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||++|.+.+.+.+++
T Consensus        81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~  160 (374)
T PF03514_consen   81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQE  160 (374)
T ss_pred             HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHH
Confidence            34599999999999999999999999999999999999999999999999999999999999999999998878899999


Q ss_pred             HHHHHHHHHHHcCceeEEeeeecCCcccCCcccccccCCCCceEEEEeccchhcccCCC----ChHHHHHHHHHhcCCcE
Q 043131          376 VGWKLAQLAESIHVEFEYRGFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQP----GAIDKVLSVVKNIKPDI  451 (592)
Q Consensus       376 tG~rL~~fA~~lgVpFeF~~v~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~----~~~~~~L~~Ir~L~PkV  451 (592)
                      ||+||.+||+++||||||++|+..+++++++++|++++  ||+|||||+|+||+|++++    .+++.||+.||+|+|+|
T Consensus       161 ~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~--~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v  238 (374)
T PF03514_consen  161 TGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRP--GEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV  238 (374)
T ss_pred             HHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccC--CcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE
Confidence            99999999999999999999888999999999999995  6999999999999999643    36889999999999999


Q ss_pred             EEEEecCCCCCCCchHHHHHHHHHHHHHHhhhhhccCCCCchHHHHHHH-HhhcccchhhcccCCCccccccChHHHHHH
Q 043131          452 FTVAEQEANHNGPVFLDRFTESLHYYSTMFDSLEGSVNSPENHKAMTEA-YMGNQICNVVACEGADRVERHETLAQWRTR  530 (592)
Q Consensus       452 vtlvEqEanhNsp~Fl~RF~EAL~yYsalFDSLea~~~~~s~~r~~~E~-~lgreI~NiVAcEG~~RvERhE~~~qWr~R  530 (592)
                      ||++|+|+|||+|+|++||.|||+||+++|||||+++++.+.+|..+|+ +||++|+|||||||.+|+||||++++|+.|
T Consensus       239 vv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r  318 (374)
T PF03514_consen  239 VVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRR  318 (374)
T ss_pred             EEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHH
Confidence            9999999999999999999999999999999999999888888887775 599999999999999999999999999999


Q ss_pred             HHcCCCccccCChhHHHHHHHHHHhcCCCCCcEEEeeCcEEEEeeCCceeEEEEeee
Q 043131          531 FSSAGFIPAHIGSNAYKQASMLLALFAGGDGYKVEENNGCLTLGWYTRPLIATSAWK  587 (592)
Q Consensus       531 m~~AGF~pvpLs~~a~~qA~~LL~~~~~~~gy~v~e~~g~L~LgWk~rpL~a~SAW~  587 (592)
                      |.+|||+++|+|++++.||++||++|. ++||+|++++|||+||||++||+++||||
T Consensus       319 ~~~aGF~~~~ls~~~~~qa~~ll~~~~-~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr  374 (374)
T PF03514_consen  319 MRRAGFRPVPLSEFAVSQAKLLLRKFP-GDGYTVEEDGGCLLLGWKGRPLVAASAWR  374 (374)
T ss_pred             HHhcCCeecCCCHHHHHHHHHHHhccC-CCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence            999999999999999999999999997 89999999999999999999999999997

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
>PF12041 DELLA: Transcriptional regulator DELLA protein N terminal; InterPro: IPR021914 Gibberellins are plant hormones which have great impact on growth signalling Back     alignment and domain information
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A Back     alignment and domain information
>PRK08317 hypothetical protein; Provisional Back     alignment and domain information
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>smart00138 MeTrc Methyltransferase, chemotaxis proteins Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Back     alignment and domain information
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query592
2zsh_B110 Structural Basis Of Gibberellin(Ga3)-Induced Della 9e-24
>pdb|2ZSH|B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor Length = 110 Back     alignment and structure 
Iteration: 1

 Score =  108 bits (270), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 63/144 (43%), Positives = 77/144 (53%), Gaps = 43/144 (29%)
Query: 21  PSGKGKMWEEEQTDGGGMDELLAVLGYNVRSSDMVEVAQKIEQLEEAMGAFQADGINHLA 80
           P  K  M   E+ DG GMDELLAVLGY VRSS+M +VAQK+EQLE  M   Q D ++ LA
Sbjct: 7   PQDKKTMMMNEEDDGNGMDELLAVLGYKVRSSEMADVAQKLEQLEVMMSNVQEDDLSQLA 66
Query: 81  TDTVHYDPSNLCTWLESMLTEFNPTMPAGLGLDPVPAPSVFDDSSFVAPAESSTITSLDF 140
           T+TVHY+P+ L TWL+SMLT+ NP             PS                     
Sbjct: 67  TETVHYNPAELYTWLDSMLTDLNP-------------PS--------------------- 92
Query: 141 SHQRVLEEPSTSDYDLKAIPGKAM 164
                    S ++YDLKAIPG A+
Sbjct: 93  ---------SNAEYDLKAIPGDAI 107

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query592
2zsh_B110 Della protein GAI; plant hormone receptor, gibbere 3e-39
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
>2zsh_B Della protein GAI; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_B* Length = 110 Back     alignment and structure
 Score =  138 bits (348), Expect = 3e-39
 Identities = 61/150 (40%), Positives = 75/150 (50%), Gaps = 43/150 (28%)

Query: 16  SCLAGPSGKGKMWEEEQTDGGGMDELLAVLGYNVRSSDMVEVAQKIEQLEEAMGAFQADG 75
                P  K  M   E+ DG GMDELLAVLGY VRSS+M +VAQK+EQLE  M   Q D 
Sbjct: 2   PGYNEPQDKKTMMMNEEDDGNGMDELLAVLGYKVRSSEMADVAQKLEQLEVMMSNVQEDD 61

Query: 76  INHLATDTVHYDPSNLCTWLESMLTEFNPTMPAGLGLDPVPAPSVFDDSSFVAPAESSTI 135
           ++ LAT+TVHY+P+ L TWL+SMLT+ NP                               
Sbjct: 62  LSQLATETVHYNPAELYTWLDSMLTDLNPP------------------------------ 91

Query: 136 TSLDFSHQRVLEEPSTSDYDLKAIPGKAMY 165
                         S ++YDLKAIPG A+ 
Sbjct: 92  -------------SSNAEYDLKAIPGDAIL 108
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query592
2zsh_B110 Della protein GAI; plant hormone receptor, gibbere 100.0
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 97.05
3dtn_A234 Putative methyltransferase MM_2633; structural gen 94.86
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 94.11
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 93.99
3dp7_A363 SAM-dependent methyltransferase; structural genomi 93.63
3dh0_A219 SAM dependent methyltransferase; cystal structure, 93.49
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 93.43
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 93.07
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 92.97
1vl5_A260 Unknown conserved protein BH2331; putative methylt 92.14
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 92.12
2r3s_A335 Uncharacterized protein; methyltransferase domain, 91.71
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 90.91
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 90.76
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 90.75
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 90.44
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 89.77
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 89.36
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 89.24
3hnr_A220 Probable methyltransferase BT9727_4108; structural 88.91
3f4k_A257 Putative methyltransferase; structural genomics, P 88.79
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 88.69
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 88.65
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 88.61
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 88.61
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 88.03
1xxl_A239 YCGJ protein; structural genomics, protein structu 87.71
3sm3_A235 SAM-dependent methyltransferases; NESG, structural 87.39
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 87.35
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 86.78
4htf_A285 S-adenosylmethionine-dependent methyltransferase; 84.78
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 84.67
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 82.43
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 82.42
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 81.81
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 81.58
2g72_A289 Phenylethanolamine N-methyltransferase; HET: SAM F 81.53
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 81.42
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 81.11
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 80.62
4dcm_A375 Ribosomal RNA large subunit methyltransferase G; 2 80.02
>2zsh_B Della protein GAI; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_B* Back     alignment and structure
Probab=100.00  E-value=6.7e-55  Score=379.09  Aligned_cols=105  Identities=58%  Similarity=0.939  Sum_probs=58.9

Q ss_pred             CCCCCCCcccccccCCCCchhhhhhhCCcccCCcHHHHHHHHHHHHHHhcccccccccccccCccccCCCccchHHHHHh
Q 043131           20 GPSGKGKMWEEEQTDGGGMDELLAVLGYNVRSSDMVEVAQKIEQLEEAMGAFQADGINHLATDTVHYDPSNLCTWLESML   99 (592)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~d~~la~~gy~v~~~~m~~vaqkle~le~~m~~~~~d~~s~lasdtvhynpsdls~w~~sml   99 (592)
                      .+++|+|||++++++++|||||||++|||||||||+||||||||||+|||++|+||+||||||||||||||||+||||||
T Consensus         6 ~~~~k~k~w~~~~~~~~g~DelLA~lGYkVrsSDma~vAQkLEqLE~vmg~a~~dgls~LasDTVHyNPSDLs~WvesML   85 (110)
T 2zsh_B            6 EPQDKKTMMMNEEDDGNGMDELLAVLGYKVRSSEMADVAQKLEQLEVMMSNVQEDDLSQLATETVHYNPAELYTWLDSML   85 (110)
T ss_dssp             -----------------CBCHHHHTTTCBCBGGGHHHHHHHHHHHHHHHTTC-------CHHHHTTSCTTBHHHHHHHHH
T ss_pred             CCCchhhhccccccccccHHHHHHHcCccccchhHHHHHHHHHHHHHHHccccchhHHHhhhhhhcCChHHHHHHHHHHH
Confidence            46899999987667899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCccccccCcCCcccccCCCCCcccccccCCCccccC
Q 043131          100 TEFNPTMPAGLGLDPVPAPSVFDDSSFVAPAESSTITSLDFSHQRVLEEPSTSDYDLKAIPGKAMYGA  167 (592)
Q Consensus       100 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~ipg~a~~~~  167 (592)
                      +||||+.                                           ++++||||||||+|||++
T Consensus        86 sEln~~~-------------------------------------------~~~~ydL~aIpg~a~y~~  110 (110)
T 2zsh_B           86 TDLNPPS-------------------------------------------SNAEYDLKAIPGDAILNQ  110 (110)
T ss_dssp             HTC-----------------------------------------------------------------
T ss_pred             HHcCCCC-------------------------------------------CccccchhcCCcccccCC
Confidence            9999641                                           134699999999999974
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query592
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 96.98
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 96.42
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 96.15
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 93.61
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 92.39
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 91.18
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 90.78
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 90.78
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 90.64
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 90.02
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 89.53
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 89.41
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 87.77
d1kyza2243 Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra 85.84
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 85.71
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 83.52
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 81.85
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=96.98  E-value=0.017  Score=53.02  Aligned_cols=105  Identities=14%  Similarity=0.192  Sum_probs=63.0

Q ss_pred             eeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEeeeecCCcccCC
Q 043131          326 RVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADLD  405 (592)
Q Consensus       326 ~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~v~~~sledl~  405 (592)
                      .-||+|+|.|.|.    +...|+... ..|..++|||+.    +.+.++...+++.+..  ..+.+++..  . ...+  
T Consensus        40 ~~~vLDlGCGtG~----~~~~l~~~~-~~~~~~v~giD~----S~~ml~~A~~~~~~~~--~~~~~~~~~--~-d~~~--  103 (225)
T d1im8a_          40 DSNVYDLGCSRGA----ATLSARRNI-NQPNVKIIGIDN----SQPMVERCRQHIAAYH--SEIPVEILC--N-DIRH--  103 (225)
T ss_dssp             TCEEEEESCTTCH----HHHHHHHTC-CCSSCEEEEECS----CHHHHHHHHHHHHTSC--CSSCEEEEC--S-CTTT--
T ss_pred             CCEEEEeccchhh----HHHHHHHhh-cCCCCceEEeCC----CHHHHHHHHHHhHhhc--ccchhhhcc--c-hhhc--
Confidence            4589999999996    445555432 246789999994    4566766655554221  233444432  2 1111  


Q ss_pred             cccccccCCCCceEEEEeccchhcccCCCChHHHHHHHH-HhcCCcEEEEE
Q 043131          406 ASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVV-KNIKPDIFTVA  455 (592)
Q Consensus       406 ~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~I-r~L~PkVvtlv  455 (592)
                           ..  .++.-+|.|.+.||++..  .....+|+.| |.|+|.=.++.
T Consensus       104 -----~~--~~~~d~i~~~~~l~~~~~--~d~~~~l~~i~~~LkpgG~li~  145 (225)
T d1im8a_         104 -----VE--IKNASMVILNFTLQFLPP--EDRIALLTKIYEGLNPNGVLVL  145 (225)
T ss_dssp             -----CC--CCSEEEEEEESCGGGSCG--GGHHHHHHHHHHHEEEEEEEEE
T ss_pred             -----cc--cccceeeEEeeeccccCh--hhHHHHHHHHHHhCCCCceeec
Confidence                 11  124455666777888732  3456788877 77999886664
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure