Citrus Sinensis ID: 043135

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470
GNDIYDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGPYNLQDTAINEFEQKWQFTSYPKCYTWLERDYSANQTEESVVHEKPDSTINIQPQNTKLEPRVAKFLSLICNISMMKQVMMEIGYNANKLPLGTLSKSTILKGYDVLKRIADVIHLPDRRKLEQLSGEFYTVIPHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLLEDDTQIQADPLYAYYQRLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIAKYLLNTHAKTHSSYSVDIVQIFRVEREGETERFKKLSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAATAGVLLLCEVALGDMSELLSANSDADKLPDGKLITKGVGQTAPDPLEAETLEDGGHLLYNEYIVYSVDQIRMRYVVQVNFKYK
ccccEEEEEEEEEccccccEEEEEEEEEEccccEEEEEEEEEEcccccccEEccccccHHHHHHHHHHHHccccccccEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHcccccccccccHHHHHHHcccccccccccccccccccHHHHccccccccccHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEEcccHHHHHHHcccccccEEEEcccccccHHHHHccccccccccccccccccEEEEEEccccccccccccccccccEEEEEEEEEcccccccccccccccccccccccccEEcccccccccccEEccccccccccEEEEEEcccEEEEEEEEEEEEEc
cccEEEEEEEEEEcccccccEEEEEEEEccccccEEEEEEcccccccccccccccccHHHHHHHHHHHHcccccccccEEEEEEEccccccHcEEcccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHccccHccccccHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccEcccccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHcccccEEcccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEEEEccHHHHHHHHHHcccEEEEEEEEcHHHHHHHHHHccccccccccHHHccccccEEEEccHHHHHHHHccEccEcEEEEEEEEEEcccEEEEcccccccccccccccEEEEcEEEEEcHHHcEEEccccEEEEcEEEEccHHHEEEEEEEEEEEEEc
gndiydarlnqtniednsndFYVIQLLEsdgggecmvydrwgrvgvkgqdtifgpynlqdtAINEFEQkwqftsypkcytwlerdysanqteesvvhekpdstiniqpqntklepRVAKFLSLICNISMMKQVMMEIGynanklplgtlskstilKGYDVLKRIADvihlpdrrkleqlsgefytviphdfgfqkmgdlvidtPQKLKLKLEMVKALGEIEVATnlleddtqiqadpLYAYYQRLHCqltplagadlashhskyfqfskiglilpvSIIILEQTFSIAKYLLNThakthssysvDIVQIFRVEREGETERFKKLSNSKNRMLLWHGsrltnwtgilsqglriappeapatgymfgkgvYFADmfsnsadycnaspaATAGVLLLCEVALGDMSELlsansdadklpdgklitkgvgqtapdpleaetledgghllYNEYIVYSVDQIRMRYVVQVNFKYK
gndiydarlnqtniednsndFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGPYNLQDTAINEFEQKWQFTSYPKCYTWLERDYSANQTeesvvhekpdstiniqpqntklepRVAKFLSLICNISMMKQVMMEIGYNANKLPLGTLSKSTILKGYDVLKRIADVIHLPDRRKLEQLSGEFYTVIPHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVatnlleddtqIQADPLYAYYQRLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIAKYLLNTHakthssysvdiVQIFRVEregeterfkklsnsknrmllWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAATAGVLLLCEVALGDMSELLSANSDADKLPDGKLITkgvgqtapdpLEAETLEDGGHLLYNEYIVYSVDQIRMRYVVQVNFKYK
GNDIYDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGPYNLQDTAINEFEQKWQFTSYPKCYTWLERDYSANQTEESVVHEKPDSTINIQPQNTKLEPRVAKFLSLICNISMMKQVMMEIGYNANKLPLGTLSKSTILKGYDVLKRIADVIHLPDRRKLEQLSGEFYTVIPHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLLEDDTQIQADPLYAYYQRLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIAKYLLNTHAKTHSSYSVDIVQIFRVEREGETERFKKLSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAATAGVLLLCEVALGDMSELLSANSDADKLPDGKLITKGVGQTAPDPLEAETLEDGGHLLYNEYIVYSVDQIRMRYVVQVNFKYK
****************NSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGPYNLQDTAINEFEQKWQFTSYPKCYTWLERDY****************************PRVAKFLSLICNISMMKQVMMEIGYNANKLPLGTLSKSTILKGYDVLKRIADVIHLPDRRKLEQLSGEFYTVIPHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLLEDDTQIQADPLYAYYQRLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIAKYLLNTHAKTHSSYSVDIVQIFRVERE************KNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAATAGVLLLCEVALGDMSEL********************************LEDGGHLLYNEYIVYSVDQIRMRYVVQVNFK**
GNDIYDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGPYNLQDTAINEFEQKWQFTSYPKCYTWLERDYSANQTEE*********************PRVAKFLSLICNISMMKQVMMEIGYNANKLPLGTLSKSTILKGYDVLKR**************QLSGEFYTVIPHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLL*******ADPLYAYYQRLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIAKYLLNTHAKTHSSYSVDIVQIFRVEREGETERFKKLSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAATAGVLLLCEVALGDMSELLSANSDADKLPDGKLITKGVGQTAPDPLEAETLEDGGHLLYNEYIVYSVDQIRMRYVVQVNFKYK
GNDIYDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGPYNLQDTAINEFEQKWQFTSYPKCYTWLERDYSA************DSTINIQPQNTKLEPRVAKFLSLICNISMMKQVMMEIGYNANKLPLGTLSKSTILKGYDVLKRIADVIHLPDRRKLEQLSGEFYTVIPHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLLEDDTQIQADPLYAYYQRLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIAKYLLNTHAKTHSSYSVDIVQIFRVEREGETERFKKLSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAATAGVLLLCEVALGDMSELLSANSDADKLPDGKLITKGVGQTAPDPLEAETLEDGGHLLYNEYIVYSVDQIRMRYVVQVNFKYK
*NDIYDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGPYNLQDTAINEFEQKWQFTSYPKCYTWLERDYSANQTEESVVH************NTKLEPRVAKFLSLICNISMMKQVMMEIGYNANKLPLGTLSKSTILKGYDVLKRIADVIHLPDRRKLEQLSGEFYTVIPHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLLEDDTQIQADPLYAYYQRLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIAKYLLNTHAKTHSSYSVDIVQIFRVEREGETERFKKLSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAATAGVLLLCEVALGDMSELLSANSDADKLPDGKLITKGVGQTAPDPLEAETLEDGGHLLYNEYIVYSVDQIRMRYVVQVNFKYK
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GNDIYDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGPYNLQDTAINEFEQKWQFTSYPKCYTWLERDYSANQTEESVVHEKPDSTINIQPQNTKLEPRVAKFLSLICNISMMKQVMMEIGYNANKLPLGTLSKSTILKGYDVLKRIADVIHLPDRRKLEQLSGEFYTVIPHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLLEDDTQIQADPLYAYYQRLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIAKYLLNTHAKTHSSYSVDIVQIFRVEREGETERFKKLSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAATAGVLLLCEVALGDMSELLSANSDADKLPDGKLITKGVGQTAPDPLEAETLEDGGHLLYNEYIVYSVDQIRMRYVVQVNFKYK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query470 2.2.26 [Sep-21-2011]
O50017653 Poly [ADP-ribose] polymer N/A no 0.931 0.670 0.616 1e-171
Q11207637 Poly [ADP-ribose] polymer yes no 0.946 0.698 0.591 1e-167
Q5Z8Q9660 Poly [ADP-ribose] polymer yes no 0.938 0.668 0.591 1e-167
Q0JMY1605 Poly [ADP-ribose] polymer no no 0.897 0.697 0.558 1e-149
O88554559 Poly [ADP-ribose] polymer yes no 0.925 0.778 0.418 1e-100
Q9UGN5583 Poly [ADP-ribose] polymer yes no 0.934 0.753 0.420 6e-98
P31669998 Poly [ADP-ribose] polymer N/A no 0.912 0.429 0.379 2e-82
P270081014 Poly [ADP-ribose] polymer no no 0.908 0.421 0.378 2e-82
Q9R1521013 Poly [ADP-ribose] polymer no no 0.908 0.421 0.378 7e-82
P111031013 Poly [ADP-ribose] polymer no no 0.908 0.421 0.376 2e-81
>sp|O50017|PARP2_MAIZE Poly [ADP-ribose] polymerase 2 OS=Zea mays GN=PARP2 PE=2 SV=1 Back     alignment and function desciption
 Score =  601 bits (1549), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 307/498 (61%), Positives = 362/498 (72%), Gaps = 60/498 (12%)

Query: 1   GNDIYDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGPYNLQD 60
           G++IYDA LNQTN+ DN+N FY+IQ+LESD GG  MVY+RWGRVGV+GQD + GP   +D
Sbjct: 186 GDEIYDATLNQTNVGDNNNKFYIIQVLESDAGGSFMVYNRWGRVGVRGQDKLHGPSPTRD 245

Query: 61  TAINEFEQKWQ------------FTSYPKCYTWLERDYSANQTEESVVHEKPDSTINIQP 108
            AI EFE K+             F  Y K YTWLE DY   +TE+ +  EK   +I  Q 
Sbjct: 246 QAIYEFEGKFHNKTNNHWSDRKNFKCYAKKYTWLEMDYG--ETEKEI--EK--GSITDQI 299

Query: 109 QNTKLEPRVAKFLSLICNISMMKQVMMEIGYNANKLPLGTLSKSTILKGYDVLKRIADVI 168
           + TKLE R+A+F+SLICNISMMKQ M+EIGYNA KLPLG L K+TILKGY VLKRI+DVI
Sbjct: 300 KETKLETRIAQFISLICNISMMKQRMVEIGYNAEKLPLGKLRKATILKGYHVLKRISDVI 359

Query: 169 HLPDRRKLEQLSGEFYTVIPHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLLE 228
              DRR LEQL+GEFYTVIPHDFGF+KM + +IDTPQKLK KLEMV+ALGEIE+AT LLE
Sbjct: 360 SKADRRHLEQLTGEFYTVIPHDFGFRKMREFIIDTPQKLKAKLEMVEALGEIEIATKLLE 419

Query: 229 DDTQIQADPLYAYYQRLHCQLTPL-AGADLASHHSKYFQFSKIGLILPVSIIILEQTFSI 287
           DD+  Q DPLYA Y++LHC  TPL A +D  S                           I
Sbjct: 420 DDSSDQDDPLYARYKQLHCDFTPLEADSDEYS--------------------------MI 453

Query: 288 AKYLLNTHAKTHSSYSVDIVQIFRVEREGETERFKKLSNSKNRMLLWHGSRLTNWTGILS 347
             YL NTH KTHS Y+VDIVQIF+V R GETERF+K ++++NRMLLWHGSRL+NW GILS
Sbjct: 454 KSYLRNTHGKTHSGYTVDIVQIFKVSRHGETERFQKFASTRNRMLLWHGSRLSNWAGILS 513

Query: 348 QGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAATAGVLLLCEVALGDMSELLS 407
           QGLRIAPPEAP TGYMFGKGVYFADMFS SA+YC AS A  +GVLLLCEVALGDM+ELL+
Sbjct: 514 QGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYASEACRSGVLLLCEVALGDMNELLN 573

Query: 408 ANSDADKLPDGKLITKGVGQTAPDPLEAETLEDG---------------GHLLYNEYIVY 452
           A+ DA+ LP GKL +KGVGQTAP+ +E++  +DG               G LLYNEYIVY
Sbjct: 574 ADYDANNLPKGKLRSKGVGQTAPNMVESKVADDGVVVPLGEPKQEPSKRGGLLYNEYIVY 633

Query: 453 SVDQIRMRYVVQVNFKYK 470
           +VDQIRMRYV+ VNF +K
Sbjct: 634 NVDQIRMRYVLHVNFNFK 651
Involved in the base excision repair (BER) pathway, by catalyzing the poly(ADP-ribosyl)ation of a limited number of acceptor proteins involved in chromatin architecture and in DNA metabolism. This modification follows DNA damages and appears as an obligatory step in a detection/signaling pathway leading to the reparation of DNA strand breaks.
Zea mays (taxid: 4577)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 3EC: 0
>sp|Q11207|PARP2_ARATH Poly [ADP-ribose] polymerase 2 OS=Arabidopsis thaliana GN=PARP2 PE=2 SV=1 Back     alignment and function description
>sp|Q5Z8Q9|PRP2A_ORYSJ Poly [ADP-ribose] polymerase 2-A OS=Oryza sativa subsp. japonica GN=PARP2-A PE=3 SV=2 Back     alignment and function description
>sp|Q0JMY1|PRP2B_ORYSJ Poly [ADP-ribose] polymerase 2-B OS=Oryza sativa subsp. japonica GN=PARP2-B PE=3 SV=2 Back     alignment and function description
>sp|O88554|PARP2_MOUSE Poly [ADP-ribose] polymerase 2 OS=Mus musculus GN=Parp2 PE=1 SV=3 Back     alignment and function description
>sp|Q9UGN5|PARP2_HUMAN Poly [ADP-ribose] polymerase 2 OS=Homo sapiens GN=PARP2 PE=1 SV=2 Back     alignment and function description
>sp|P31669|PARP1_XENLA Poly [ADP-ribose] polymerase 1 (Fragment) OS=Xenopus laevis GN=parp1 PE=2 SV=1 Back     alignment and function description
>sp|P27008|PARP1_RAT Poly [ADP-ribose] polymerase 1 OS=Rattus norvegicus GN=Parp1 PE=1 SV=4 Back     alignment and function description
>sp|Q9R152|PARP1_CRIGR Poly [ADP-ribose] polymerase 1 OS=Cricetulus griseus GN=PARP1 PE=2 SV=3 Back     alignment and function description
>sp|P11103|PARP1_MOUSE Poly [ADP-ribose] polymerase 1 OS=Mus musculus GN=Parp1 PE=1 SV=3 Back     alignment and function description

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query470
TAIR|locus:2005523637 PARP2 "poly(ADP-ribose) polyme 0.542 0.400 0.600 2.5e-151
ZFIN|ZDB-GENE-031113-6649 parp2 "poly (ADP-ribose) polym 0.319 0.231 0.625 1.9e-83
UNIPROTKB|P264461011 PARP1 "Poly [ADP-ribose] polym 0.397 0.184 0.553 3.3e-79
UNIPROTKB|I3LDH31018 PARP1 "Uncharacterized protein 0.4 0.184 0.517 4.6e-78
RGD|20531014 Parp1 "poly (ADP-ribose) polym 0.4 0.185 0.527 1.2e-77
ZFIN|ZDB-GENE-030131-39551013 parp1 "poly (ADP-ribose) polym 0.389 0.180 0.535 1.5e-77
UNIPROTKB|J9NXE3972 PARP1 "Uncharacterized protein 0.4 0.193 0.527 4.6e-77
UNIPROTKB|F1Q2M3976 PARP1 "Uncharacterized protein 0.4 0.192 0.527 4.7e-77
UNIPROTKB|F1MU081016 PARP1 "Poly [ADP-ribose] polym 0.4 0.185 0.522 8.5e-77
UNIPROTKB|P098741014 PARP1 "Poly [ADP-ribose] polym 0.4 0.185 0.517 8.9e-77
TAIR|locus:2005523 PARP2 "poly(ADP-ribose) polymerase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 808 (289.5 bits), Expect = 2.5e-151, Sum P(2) = 2.5e-151
 Identities = 161/268 (60%), Positives = 200/268 (74%)

Query:     1 GNDIYDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGPYNLQD 60
             G+D+YDA LNQTN+ DN+N F+V+Q+LESD     MVY RWGRVGVKGQ  + GPY+  D
Sbjct:   165 GDDVYDAILNQTNVRDNNNKFFVLQVLESDSKKTYMVYTRWGRVGVKGQSKLDGPYDSWD 224

Query:    61 TAI----NEFEQK----W----QFTSYPKCYTWLERDYSANQTEESVVHEKPDSTINIQP 108
              AI    N+F  K    W    +F  +PK YTWLE DY   + +  V ++ P S+  ++P
Sbjct:   225 RAIEIFTNKFNDKTKNYWSDRKEFIPHPKSYTWLEMDYGKEENDSPVNNDIPSSSSEVKP 284

Query:   109 QNTKLEPRVAKFLSLICNISMMKQVMMEIGYNANKLPLGTLSKSTILKGYDVLKRIADVI 168
             + +KL+ RVAKF+SLICN+SMM Q MMEIGYNANKLPLG +SKSTI KGY+VLKRI++VI
Sbjct:   285 EQSKLDTRVAKFISLICNVSMMAQHMMEIGYNANKLPLGKISKSTISKGYEVLKRISEVI 344

Query:   169 HLPDRRKLEQLSGEFYTVIPHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLLE 228
                DR +LE+LSGEFYTVIPHDFGF+KM   VIDTPQKLK K+EMV+ALGEIE+AT LL 
Sbjct:   345 DRYDRTRLEELSGEFYTVIPHDFGFKKMSQFVIDTPQKLKQKIEMVEALGEIELATKLLS 404

Query:   229 DDTQIQADPLYAYYQRLHCQLTPLAGAD 256
              D  +Q DPLY +YQ+L+C LTP+ G D
Sbjct:   405 VDPGLQDDPLYYHYQQLNCGLTPV-GND 431
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006471 "protein ADP-ribosylation" evidence=IEA;ISS
GO:0006302 "double-strand break repair" evidence=RCA
GO:0010332 "response to gamma radiation" evidence=RCA
ZFIN|ZDB-GENE-031113-6 parp2 "poly (ADP-ribose) polymerase family, member 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P26446 PARP1 "Poly [ADP-ribose] polymerase 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|I3LDH3 PARP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|2053 Parp1 "poly (ADP-ribose) polymerase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3955 parp1 "poly (ADP-ribose) polymerase family, member 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|J9NXE3 PARP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q2M3 PARP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MU08 PARP1 "Poly [ADP-ribose] polymerase 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P09874 PARP1 "Poly [ADP-ribose] polymerase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5Z8Q9PRP2A_ORYSJ2, ., 4, ., 2, ., 3, 00.59150.93820.6681yesno
Q11207PARP2_ARATH2, ., 4, ., 2, ., 3, 00.59150.94680.6985yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.20.921
3rd Layer2.4.2.300.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
PLN03124643 PLN03124, PLN03124, poly [ADP-ribose] polymerase; 0.0
cd01437347 cd01437, parp_like, Poly(ADP-ribose) polymerase (p 1e-155
PLN03123981 PLN03123, PLN03123, poly [ADP-ribose] polymerase; 1e-118
pfam00644206 pfam00644, PARP, Poly(ADP-ribose) polymerase catal 7e-81
pfam02877130 pfam02877, PARP_reg, Poly(ADP-ribose) polymerase, 6e-51
PLN03122815 PLN03122, PLN03122, Poly [ADP-ribose] polymerase; 1e-38
cd08002100 cd08002, WGR_PARP3_like, WGR domain of poly(ADP-ri 2e-30
cd07997102 cd07997, WGR_PARP, WGR domain of poly(ADP-ribose) 1e-23
cd08003103 cd08003, WGR_PARP2_like, WGR domain of poly(ADP-ri 5e-21
pfam0540683 pfam05406, WGR, WGR domain 4e-17
smart0077384 smart00773, WGR, Proposed nucleic acid binding dom 2e-16
cd01341137 cd01341, ADP_ribosyl, ADP_ribosylating enzymes cat 2e-16
cd08001104 cd08001, WGR_PARP1_like, WGR domain of poly(ADP-ri 7e-07
cd01439121 cd01439, TCCD_inducible_PARP_like, Poly(ADP-ribose 0.002
>gnl|CDD|215591 PLN03124, PLN03124, poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information 
 Score =  740 bits (1913), Expect = 0.0
 Identities = 314/497 (63%), Positives = 368/497 (74%), Gaps = 55/497 (11%)

Query: 1   GNDIYDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGPYNLQD 60
           G+D+YDA LNQTN+ DN+N FYV+Q+LESD G + MVY RWGRVGVKGQD + GPY+ ++
Sbjct: 173 GDDVYDAMLNQTNVGDNNNKFYVLQVLESDDGSKYMVYTRWGRVGVKGQDKLHGPYDSRE 232

Query: 61  TAINEFEQK--------W----QFTSYPKCYTWLERDYSANQTEESVVHEKPDSTINIQP 108
            AI EFE+K        W     F S+PK YTWLE DY   + EE    +KP  +   + 
Sbjct: 233 PAIREFEKKFYDKTKNHWSDRKNFISHPKKYTWLEMDY---EDEEESKKDKPSVSSEDKN 289

Query: 109 QNTKLEPRVAKFLSLICNISMMKQVMMEIGYNANKLPLGTLSKSTILKGYDVLKRIADVI 168
           + +KL+PRVA+F+SLIC++SMMKQ MMEIGYNA KLPLG LSKSTILKGY+VLKRIA+VI
Sbjct: 290 KQSKLDPRVAQFISLICDVSMMKQQMMEIGYNARKLPLGKLSKSTILKGYEVLKRIAEVI 349

Query: 169 HLPDRRKLEQLSGEFYTVIPHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLLE 228
              DR  LE+LSGEFYTVIPHDFGF+KM    IDTPQKLK KLEMV+ALGEIE+AT LL+
Sbjct: 350 SRSDRETLEELSGEFYTVIPHDFGFKKMRQFTIDTPQKLKHKLEMVEALGEIEIATKLLK 409

Query: 229 DDTQIQADPLYAYYQRLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIA 288
           DD   Q DPLYA+Y+RL+C+L PL   D     S+ F                     IA
Sbjct: 410 DDIGEQDDPLYAHYKRLNCELEPL-DTD-----SEEFSM-------------------IA 444

Query: 289 KYLLNTHAKTHSSYSVDIVQIFRVEREGETERFKKLSNSKNRMLLWHGSRLTNWTGILSQ 348
           KYL NTH +THS Y+++IVQIF+V REGE ERF+K S++KNRMLLWHGSRLTNWTGILSQ
Sbjct: 445 KYLENTHGQTHSGYTLEIVQIFKVSREGEDERFQKFSSTKNRMLLWHGSRLTNWTGILSQ 504

Query: 349 GLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAATAGVLLLCEVALGDMSELLSA 408
           GLRIAPPEAP+TGYMFGKGVYFADMFS SA+YC AS A   GVLLLCEVALGDM+ELL A
Sbjct: 505 GLRIAPPEAPSTGYMFGKGVYFADMFSKSANYCYASAANPDGVLLLCEVALGDMNELLQA 564

Query: 409 NSDADKLPDGKLITKGVGQTAPDPLEAETLEDG---------------GHLLYNEYIVYS 453
           + +A+KLP GKL TKGVG+T PDP EA+TLEDG               G L YNEYIVY+
Sbjct: 565 DYNANKLPPGKLSTKGVGRTVPDPSEAKTLEDGVVVPLGKPVESPYSKGSLEYNEYIVYN 624

Query: 454 VDQIRMRYVVQVNFKYK 470
           VDQIRMRYV+QV F YK
Sbjct: 625 VDQIRMRYVLQVKFNYK 641

Length = 643
>gnl|CDD|238717 cd01437, parp_like, Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA Back     alignment and domain information
>gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>gnl|CDD|216040 pfam00644, PARP, Poly(ADP-ribose) polymerase catalytic domain Back     alignment and domain information
>gnl|CDD|190460 pfam02877, PARP_reg, Poly(ADP-ribose) polymerase, regulatory domain Back     alignment and domain information
>gnl|CDD|178669 PLN03122, PLN03122, Poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>gnl|CDD|153429 cd08002, WGR_PARP3_like, WGR domain of poly(ADP-ribose) polymerase 3 and similar proteins Back     alignment and domain information
>gnl|CDD|153426 cd07997, WGR_PARP, WGR domain of poly(ADP-ribose) polymerases Back     alignment and domain information
>gnl|CDD|153430 cd08003, WGR_PARP2_like, WGR domain of poly(ADP-ribose) polymerases Back     alignment and domain information
>gnl|CDD|218579 pfam05406, WGR, WGR domain Back     alignment and domain information
>gnl|CDD|214814 smart00773, WGR, Proposed nucleic acid binding domain Back     alignment and domain information
>gnl|CDD|238651 cd01341, ADP_ribosyl, ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates Back     alignment and domain information
>gnl|CDD|153428 cd08001, WGR_PARP1_like, WGR domain of poly(ADP-ribose) polymerase 1 and similar proteins Back     alignment and domain information
>gnl|CDD|238719 cd01439, TCCD_inducible_PARP_like, Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 470
PLN03124643 poly [ADP-ribose] polymerase; Provisional 100.0
PLN03122815 Poly [ADP-ribose] polymerase; Provisional 100.0
PLN03123981 poly [ADP-ribose] polymerase; Provisional 100.0
cd01437347 parp_like Poly(ADP-ribose) polymerase (parp) catal 100.0
KOG1037531 consensus NAD+ ADP-ribosyltransferase Parp, requir 100.0
PF00644206 PARP: Poly(ADP-ribose) polymerase catalytic domain 100.0
PF02877133 PARP_reg: Poly(ADP-ribose) polymerase, regulatory 100.0
cd01438223 tankyrase_like Tankyrases interact with the telome 100.0
cd01439121 TCCD_inducible_PARP_like Poly(ADP-ribose) polymera 99.94
cd08003103 WGR_PARP2_like WGR domain of poly(ADP-ribose) poly 99.94
cd08002100 WGR_PARP3_like WGR domain of poly(ADP-ribose) poly 99.92
cd08001104 WGR_PARP1_like WGR domain of poly(ADP-ribose) poly 99.91
cd07997102 WGR_PARP WGR domain of poly(ADP-ribose) polymerase 99.9
cd01341137 ADP_ribosyl ADP_ribosylating enzymes catalyze the 99.89
smart0077384 WGR Proposed nucleic acid binding domain. This dom 99.72
PF0540681 WGR: WGR domain; InterPro: IPR008893 This domain i 99.69
cd0799473 WGR WGR domain. The WGR domain is found in a varie 99.69
cd0799674 WGR_MMR_like WGR domain of molybdate metabolism re 99.51
COG383185 Uncharacterized conserved protein [Function unknow 99.04
cd0799877 WGR_DNA_ligase WGR domain of bacterial DNA ligases 98.32
>PLN03124 poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7.4e-120  Score=971.75  Aligned_cols=442  Identities=70%  Similarity=1.141  Sum_probs=412.0

Q ss_pred             CCCceEEEEEeecCcCCCcceEEEEEEeeCCCCcEEEEEEeeecccCCCceeecCCCCHHHHHHHHHHhh----------
Q 043135            1 GNDIYDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGPYNLQDTAINEFEQKW----------   70 (470)
Q Consensus         1 ~~~~y~~~L~ktd~~~n~nkFY~mQll~~~~~~~y~v~~rWGRvG~~G~~~~~~~f~s~~~Ai~~F~k~f----------   70 (470)
                      |+.+|+|||++||+++|+|+||+||||+++.++.|+||+||||||+.||+++..+|+++++|+.+|+++|          
T Consensus       173 ~g~iYda~Lnqtdi~~n~NkFY~iQlLe~d~~~~Y~v~~rWGRVG~~Gq~~l~~~~~sle~Ai~~F~kkF~eKTGN~W~~  252 (643)
T PLN03124        173 GDDVYDAMLNQTNVGDNNNKFYVLQVLESDDGSKYMVYTRWGRVGVKGQDKLHGPYDSREPAIREFEKKFYDKTKNHWSD  252 (643)
T ss_pred             CCeEEEEEEEccccCCCCcceEEEEEEEeCCCCeEEEEEEeCccCCcCcccccCCCCCHHHHHHHHHHHHHHHhCCchhh
Confidence            5689999999999999999999999999988899999999999999999998777999999999999999          


Q ss_pred             --cCccCCCCceEEecccCccccccccccCCCCCccCCCCCCCCCcHHHHHHHHHHcCHHHHHHHHHHhccCCCCCCCCC
Q 043135           71 --QFTSYPKCYTWLERDYSANQTEESVVHEKPDSTINIQPQNTKLEPRVAKFLSLICNISMMKQVMMEIGYNANKLPLGT  148 (470)
Q Consensus        71 --~F~k~pgKY~~ve~d~~~~~~~~~~~~~~~~~~~~~~~~~s~L~~~v~~l~~~i~~~~~~~~~~~~~~~d~~~~Plg~  148 (470)
                        +|+++||||.+|++||+.++.+...   ........+...|+|+++||+||++|||+++|+++|++++||+.+||||+
T Consensus       253 R~~F~k~pgKY~~ie~dy~~~~~~~~~---~~~~~~~~~~~~skL~~~Vq~Li~lIfd~~~m~~~m~e~~~D~~KmPLGk  329 (643)
T PLN03124        253 RKNFISHPKKYTWLEMDYEDEEESKKD---KPSVSSEDKNKQSKLDPRVAQFISLICDVSMMKQQMMEIGYNARKLPLGK  329 (643)
T ss_pred             cccccccCCceeEEEeecccccchhhh---ccchhccccCCCCCCCHHHHHHHHHHhCHHHHHHHHHHcCCCcccCCCcc
Confidence              7999999999999999876543221   11111122334799999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHhcCCChHHHHHhhhhccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhHHHHHhhhh
Q 043135          149 LSKSTILKGYDVLKRIADVIHLPDRRKLEQLSGEFYTVIPHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLLE  228 (470)
Q Consensus       149 Ls~~~i~~~~~iL~~i~~~l~~~~~~~~~~ls~~fY~lIPh~~g~~~~~~~~i~~~~~l~~k~~ll~~L~di~~a~~l~~  228 (470)
                      ||++||.+|++||++|+++|++.....+.+|||+||++|||+||++.+++|+||+.++|++|++|||+|.|||+|++|++
T Consensus       330 LSk~qI~kgy~vL~ei~~~l~~~~~~~l~~lSn~FYTlIPH~FG~~~~~~~vIdt~~~lk~k~elLe~L~DIevA~~ll~  409 (643)
T PLN03124        330 LSKSTILKGYEVLKRIAEVISRSDRETLEELSGEFYTVIPHDFGFKKMRQFTIDTPQKLKHKLEMVEALGEIEIATKLLK  409 (643)
T ss_pred             cCHHHHHHHHHHHHHHHHHHcccchHHHHHHhcCeEEecCcccccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999888888999999999999999999998888999999999999999999999999999998


Q ss_pred             cccccCCCchHHHHhccCceeeeecCCcccCCCccccccccccccchhhHHhhhhHHHHHHHHHhccCCCCCCcccccce
Q 043135          229 DDTQIQADPLYAYYQRLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIAKYLLNTHAKTHSSYSVDIVQ  308 (470)
Q Consensus       229 ~~~~~~~~pld~~Y~~L~~~i~~l~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~~~~~~~~~~I~~  308 (470)
                      ....+..||||++|++|+|+|+||++   +   |+||                   ++|++|+.+||+++|..|+++|.+
T Consensus       410 ~~~~~~~~pld~~Y~~L~c~i~pLd~---~---S~ef-------------------k~I~~Yl~nT~~~th~~y~l~V~~  464 (643)
T PLN03124        410 DDIGEQDDPLYAHYKRLNCELEPLDT---D---SEEF-------------------SMIAKYLENTHGQTHSGYTLEIVQ  464 (643)
T ss_pred             hccCCCCCcHHHHHHHcCCeeEEcCC---C---CHHH-------------------HHHHHHHHhcCCCccCcCceeEEE
Confidence            87666789999999999999999999   7   9999                   999999999999999999999999


Q ss_pred             eEEEeechHhHHHHhhccCCCceEeeCCCCCcCHHHHhhcCCCCCCCCCCCcceeeeeeeeccccccccccccCCCCCCC
Q 043135          309 IFRVEREGETERFKKLSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAAT  388 (470)
Q Consensus       309 If~V~r~~e~~~F~~~~~~~N~~lL~HGT~~~n~~~Il~~Gl~i~p~~~~~~G~~fG~GIYfad~~skS~~Y~~~~~~~~  388 (470)
                      ||+|+|.+|.+||+.+++.+|++|||||||.+||.+||++||+|+|++++.+|+|||+||||||++|||++||.+..+++
T Consensus       465 If~V~R~~E~~rF~~~~~~~Nr~LLWHGSr~~N~~gILs~GLriaPpea~~~GymfGkGIYFAd~~skSa~Yc~~~~~~~  544 (643)
T PLN03124        465 IFKVSREGEDERFQKFSSTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPSTGYMFGKGVYFADMFSKSANYCYASAANP  544 (643)
T ss_pred             EEEeccccchhhHHHhhccCCeEEEEcCCCcccHHHHHhccCccCCcccccccccccceeEecchhhhhhhhhhccCCCC
Confidence            99999999999999998899999999999999999999999999999999999999999999999999999999987788


Q ss_pred             ceEEEEEEEeeCCceecccCCCCCCCCCCCCeeeeccCCCCCCCCCCeEecCC---------------CcCCCcEEEEee
Q 043135          389 AGVLLLCEVALGDMSELLSANSDADKLPDGKLITKGVGQTAPDPLEAETLEDG---------------GHLLYNEYIVYS  453 (470)
Q Consensus       389 ~~~mlLceValG~~~~~~~~~~~~~~~p~G~dSv~g~g~~~p~~~~~~~~~~G---------------~~l~~nEyVVYd  453 (470)
                      .++||||+||||++++++.+++++.++|+|+|||+|+|++.|+|++.+++++|               ++|.||||||||
T Consensus       545 ~g~llLceVaLG~~~el~~~~y~a~~~p~G~~S~kG~G~~~Pdp~~~~~~~dGV~VP~Gk~~~~~~~~~~L~yNEYIVYd  624 (643)
T PLN03124        545 DGVLLLCEVALGDMNELLQADYNANKLPPGKLSTKGVGRTVPDPSEAKTLEDGVVVPLGKPVESPYSKGSLEYNEYIVYN  624 (643)
T ss_pred             eeEEEEEEEecCCcchhccCccccccCCCCceeEEeccCCCCCcccceecCCCeEeeCCccccCCCCCCccccCceEEec
Confidence            99999999999999999999999999999999999999999999887655443               578999999999


Q ss_pred             CCceeeeeEEEEEEEcC
Q 043135          454 VDQIRMRYVVQVNFKYK  470 (470)
Q Consensus       454 ~~Qv~~~YLI~~~~~~~  470 (470)
                      ++||++||||+++|+|+
T Consensus       625 ~~Qvr~rYLv~vkf~~~  641 (643)
T PLN03124        625 VDQIRMRYVLQVKFNYK  641 (643)
T ss_pred             hhHeEEEEEEEEEEeec
Confidence            99999999999999985

>PLN03122 Poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>PLN03123 poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>cd01437 parp_like Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA Back     alignment and domain information
>KOG1037 consensus NAD+ ADP-ribosyltransferase Parp, required for poly-ADP ribosylation of nuclear proteins [Transcription; Replication, recombination and repair; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00644 PARP: Poly(ADP-ribose) polymerase catalytic domain; InterPro: IPR012317 Poly(ADP-ribose) polymerases (PARP) are a family of enzymes present in eukaryotes, which catalyze the poly(ADP-ribosyl)ation of a limited number of proteins involved in chromatin architecture, DNA repair, or in DNA metabolism, including PARP itself Back     alignment and domain information
>PF02877 PARP_reg: Poly(ADP-ribose) polymerase, regulatory domain; InterPro: IPR004102 Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA Back     alignment and domain information
>cd01438 tankyrase_like Tankyrases interact with the telomere reverse transcriptase complex (TERT) Back     alignment and domain information
>cd01439 TCCD_inducible_PARP_like Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA Back     alignment and domain information
>cd08003 WGR_PARP2_like WGR domain of poly(ADP-ribose) polymerases Back     alignment and domain information
>cd08002 WGR_PARP3_like WGR domain of poly(ADP-ribose) polymerase 3 and similar proteins Back     alignment and domain information
>cd08001 WGR_PARP1_like WGR domain of poly(ADP-ribose) polymerase 1 and similar proteins Back     alignment and domain information
>cd07997 WGR_PARP WGR domain of poly(ADP-ribose) polymerases Back     alignment and domain information
>cd01341 ADP_ribosyl ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates Back     alignment and domain information
>smart00773 WGR Proposed nucleic acid binding domain Back     alignment and domain information
>PF05406 WGR: WGR domain; InterPro: IPR008893 This domain is named after the most conserved central motif of the domain Back     alignment and domain information
>cd07994 WGR WGR domain Back     alignment and domain information
>cd07996 WGR_MMR_like WGR domain of molybdate metabolism regulator and related proteins Back     alignment and domain information
>COG3831 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd07998 WGR_DNA_ligase WGR domain of bacterial DNA ligases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
4dqy_C506 Structure Of Human Parp-1 Bound To A Dna Double Str 5e-82
1gs0_A351 Crystal Structure Of The Catalytic Fragment Of Muri 7e-82
3kcz_A368 Human Poly(Adp-Ribose) Polymerase 2, Catalytic Frag 1e-77
1uk0_A350 Crystal Structure Of Catalytic Domain Of Human Poly 4e-71
2rd6_A350 Parp Complexed With A861695 Length = 350 9e-71
1efy_A350 Crystal Structure Of The Catalytic Fragment Of Poly 4e-68
1a26_A361 The Catalytic Fragment Of Poly(Adp-Ribose) Polymera 5e-68
3c49_A357 Human Poly(Adp-Ribose) Polymerase 3, Catalytic Frag 6e-31
2cr9_A139 Solution Structure Of Wgr Domain Of Poly(Adp-Ribose 4e-04
2eoc_A124 Solution Structure Of The Wgr Domain From Human Pol 7e-04
>pdb|4DQY|C Chain C, Structure Of Human Parp-1 Bound To A Dna Double Strand Break Length = 506 Back     alignment and structure 
Iteration: 1

 Score =  301 bits (771), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 192/505 (38%), Positives = 270/505 (53%), Gaps = 78/505 (15%)
Query: 1   GNDIYDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGPYNLQ- 59
           G  ++ A L   +I   +N +Y +QLLE D      ++  WGRVG     T+ G   L+ 
Sbjct: 33  GGKVFSATLGLVDIVKGTNSYYKLQLLEDDKENRYWIFRSWGRVG-----TVIGSNKLEQ 87
Query: 60  ----DTAINEF----EQK----WQ---FTSYPKCYTWLERDYSANQTEESVVHEKPDSTI 104
               + AI  F    E+K    W    FT YPK +  LE DY   Q EE+V        +
Sbjct: 88  MPSKEDAIEHFMKLYEEKTGNAWHSKNFTKYPKKFYPLEIDYG--QDEEAV------KKL 139
Query: 105 NIQP-QNTKLEPRVAKFLSLICNISMMKQVMMEIGYNANKLPLGTLSKSTILKGYDVLKR 163
            + P   +KL   V   + +I ++  MK+ M+E   +  K+PLG LSK  I   Y +L  
Sbjct: 140 TVNPGTKSKLPKPVQDLIKMIFDVESMKKAMVEYEIDLQKMPLGKLSKRQIQAAYSILSE 199
Query: 164 IADVI-HLPDRRKLEQLSGEFYTVIPHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEV 222
           +   +       ++  LS  FYT+IPHDFG +K    +++    ++ K EM+  L +IEV
Sbjct: 200 VQQAVSQGSSDSQILDLSNRFYTLIPHDFGMKK--PPLLNNADSVQAKAEMLDNLLDIEV 257
Query: 223 ATNLLE---DDTQIQADPLYAYYQRLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSII 279
           A +LL    DD+    DP+   Y++L    T +   D  S                    
Sbjct: 258 AYSLLRGGSDDSS--KDPIDVNYEKLK---TDIKVVDRDS-------------------- 292
Query: 280 ILEQTFSIAKYLLNTHAKTHSSYSVDIVQIFRVEREGETERFKKLSNSKNRMLLWHGSRL 339
             E+   I KY+ NTHA TH++Y ++++ IF++EREGE +R+K      NR LLWHGSR 
Sbjct: 293 --EEAEIIRKYVKNTHATTHNAYDLEVIDIFKIEREGECQRYKPFKQLHNRRLLWHGSRT 350
Query: 340 TNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAATAGVLLLCEVAL 399
           TN+ GILSQGLRIAPPEAP TGYMFGKG+YFADM S SA+YC+ S     G++LL EVAL
Sbjct: 351 TNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILLGEVAL 410
Query: 400 GDMSELLSANSDADKLPDGKLITKGVGQTAPDPLEAETLE--------------DGGHLL 445
           G+M EL  A S   KLP GK   KG+G+T PDP    +L+              +   LL
Sbjct: 411 GNMYELKHA-SHISKLPKGKHSVKGLGKTTPDPSANISLDGVDVPLGTGISSGVNDTSLL 469
Query: 446 YNEYIVYSVDQIRMRYVVQVNFKYK 470
           YNEYIVY + Q+ ++Y++++ F +K
Sbjct: 470 YNEYIVYDIAQVNLKYLLKLKFNFK 494
>pdb|1GS0|A Chain A, Crystal Structure Of The Catalytic Fragment Of Murine Poly (Adp-Ribose) Polymerase-2 Length = 351 Back     alignment and structure
>pdb|3KCZ|A Chain A, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In Complex With An Inhibitor 3-Aminobenzamide Length = 368 Back     alignment and structure
>pdb|1UK0|A Chain A, Crystal Structure Of Catalytic Domain Of Human Poly(Adp- Ribose) Polymerase With A Novel Inhibitor Length = 350 Back     alignment and structure
>pdb|2RD6|A Chain A, Parp Complexed With A861695 Length = 350 Back     alignment and structure
>pdb|1EFY|A Chain A, Crystal Structure Of The Catalytic Fragment Of Poly (Adp- Ribose) Polymerase Complexed With A Benzimidazole Inhibitor Length = 350 Back     alignment and structure
>pdb|1A26|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase Complexed With Carba-Nad Length = 361 Back     alignment and structure
>pdb|3C49|A Chain A, Human Poly(Adp-Ribose) Polymerase 3, Catalytic Fragment In Complex With An Inhibitor Ku0058948 Length = 357 Back     alignment and structure
>pdb|2CR9|A Chain A, Solution Structure Of Wgr Domain Of Poly(Adp-Ribose) Polymerase-1 Length = 139 Back     alignment and structure
>pdb|2EOC|A Chain A, Solution Structure Of The Wgr Domain From Human Poly [adp- Ribose] Polymerase-3 Length = 124 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
4dqy_C506 Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-rib 1e-130
3kjd_A368 Poly [ADP-ribose] polymerase 2; transferase, enzym 1e-114
1efy_A350 Poly (ADP-ribose) polymerase; benzimidazole, inhib 1e-113
3c4h_A357 Poly(ADP-ribose) polymerase 3; enzyme-inhibitor co 2e-96
4f0d_A277 PARP-16, poly [ADP-ribose] polymerase 16; transfer 3e-39
3u9h_A240 Tankyrase-2; protein-ligand complex, diphtheria to 2e-31
3hkv_A217 PARP-10, poly [ADP-ribose] polymerase 10; NAD, tra 5e-28
3smj_A193 Poly [ADP-ribose] polymerase 14; diphtheria toxin 2e-27
2pqf_A198 Poly [ADP-ribose] polymerase 12; enzyme-inhibitor 3e-26
3blj_A221 Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, 4e-26
2x5y_A173 Zinc finger CCCH-type antiviral protein 1; antivir 2e-24
2eoc_A124 Poly [ADP-ribose] polymerase 3; anti-parallel beta 5e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A Length = 506 Back     alignment and structure
 Score =  385 bits (989), Expect = e-130
 Identities = 176/497 (35%), Positives = 258/497 (51%), Gaps = 62/497 (12%)

Query: 1   GNDIYDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGPYNLQD 60
           G  ++ A L   +I   +N +Y +QLLE D      ++  WGRVG             ++
Sbjct: 33  GGKVFSATLGLVDIVKGTNSYYKLQLLEDDKENRYWIFRSWGRVGTVIGSNKLEQMPSKE 92

Query: 61  TAINEFEQK--------WQ---FTSYPKCYTWLERDYSANQTEESVVHEKPDSTINIQPQ 109
            AI  F +         W    FT YPK +  LE DY  ++     +   P +       
Sbjct: 93  DAIEHFMKLYEEKTGNAWHSKNFTKYPKKFYPLEIDYGQDEEAVKKLTVNPGTK------ 146

Query: 110 NTKLEPRVAKFLSLICNISMMKQVMMEIGYNANKLPLGTLSKSTILKGYDVLKRIADVIH 169
            +KL   V   + +I ++  MK+ M+E   +  K+PLG LSK  I   Y +L  +   + 
Sbjct: 147 -SKLPKPVQDLIKMIFDVESMKKAMVEYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAVS 205

Query: 170 LP-DRRKLEQLSGEFYTVIPHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLLE 228
                 ++  LS  FYT+IPHDFG +K    +++    ++ K EM+  L +IEVA +LL 
Sbjct: 206 QGSSDSQILDLSNRFYTLIPHDFGMKKP--PLLNNADSVQAKAEMLDNLLDIEVAYSLLR 263

Query: 229 DDTQIQ-ADPLYAYYQRLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSI 287
             +     DP+   Y++L   +  +         S+  +  +                  
Sbjct: 264 GGSDDSSKDPIDVNYEKLKTDIKVV------DRDSEEAEIIR------------------ 299

Query: 288 AKYLLNTHAKTHSSYSVDIVQIFRVEREGETERFKKLSNSKNRMLLWHGSRLTNWTGILS 347
            KY+ NTHA TH++Y ++++ IF++EREGE +R+K      NR LLWHGSR TN+ GILS
Sbjct: 300 -KYVKNTHATTHNAYDLEVIDIFKIEREGECQRYKPFKQLHNRRLLWHGSRTTNFAGILS 358

Query: 348 QGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAATAGVLLLCEVALGDMSELLS 407
           QGLRIAPPEAP TGYMFGKG+YFADM S SA+YC+ S     G++LL EVALG+M EL  
Sbjct: 359 QGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILLGEVALGNMYELKH 418

Query: 408 ANSDADKLPDGKLITKGVGQTAPDPLEAETLED--------------GGHLLYNEYIVYS 453
           A+  + KLP GK   KG+G+T PDP    +L+                  LLYNEYIVY 
Sbjct: 419 ASHIS-KLPKGKHSVKGLGKTTPDPSANISLDGVDVPLGTGISSGVNDTSLLYNEYIVYD 477

Query: 454 VDQIRMRYVVQVNFKYK 470
           + Q+ ++Y++++ F +K
Sbjct: 478 IAQVNLKYLLKLKFNFK 494
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A Length = 368 Back     alignment and structure
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A* Length = 350 Back     alignment and structure
>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A* Length = 357 Back     alignment and structure
>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15, structural genomics structural genomics consortium, SGC; HET: 3AB; 2.70A {Homo sapiens} Length = 277 Back     alignment and structure
>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* Length = 240 Back     alignment and structure
>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens} Length = 217 Back     alignment and structure
>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* Length = 193 Back     alignment and structure
>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens} Length = 198 Back     alignment and structure
>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A* Length = 221 Back     alignment and structure
>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens} Length = 173 Back     alignment and structure
>2eoc_A Poly [ADP-ribose] polymerase 3; anti-parallel beta-sheet, cell cycle control, DNA damage, transcription, NAD+, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query470
4dqy_C506 Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-rib 100.0
3kjd_A368 Poly [ADP-ribose] polymerase 2; transferase, enzym 100.0
1efy_A350 Poly (ADP-ribose) polymerase; benzimidazole, inhib 100.0
3c4h_A357 Poly(ADP-ribose) polymerase 3; enzyme-inhibitor co 100.0
2x5y_A173 Zinc finger CCCH-type antiviral protein 1; antivir 100.0
3u9h_A240 Tankyrase-2; protein-ligand complex, diphtheria to 100.0
2pqf_A198 Poly [ADP-ribose] polymerase 12; enzyme-inhibitor 100.0
3smj_A193 Poly [ADP-ribose] polymerase 14; diphtheria toxin 100.0
3blj_A221 Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, 100.0
3hkv_A217 PARP-10, poly [ADP-ribose] polymerase 10; NAD, tra 100.0
2eoc_A124 Poly [ADP-ribose] polymerase 3; anti-parallel beta 99.91
4f0d_A277 PARP-16, poly [ADP-ribose] polymerase 16; transfer 99.81
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 97.97
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A Back     alignment and structure
Probab=100.00  E-value=3.1e-111  Score=894.65  Aligned_cols=433  Identities=41%  Similarity=0.732  Sum_probs=383.4

Q ss_pred             CCCceEEEEEeecCcCCCcceEEEEEEeeCCCCcEEEEEEeeecccC-CCceeecCCCCHHHHHHHHHHhh---------
Q 043135            1 GNDIYDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVK-GQDTIFGPYNLQDTAINEFEQKW---------   70 (470)
Q Consensus         1 ~~~~y~~~L~ktd~~~n~nkFY~mQll~~~~~~~y~v~~rWGRvG~~-G~~~~~~~f~s~~~Ai~~F~k~f---------   70 (470)
                      |+.+|+|+|++||++.|+|+||+|||++++.++.|+|||+|||||+. ||.++. +|+++++|+++|+++|         
T Consensus        33 ~~~~Y~~~L~~td~~~n~NkfY~lQll~~~~~~~y~v~~rWGRVG~~~Gq~~l~-~~~s~~~Ai~~F~k~F~~KTgn~W~  111 (506)
T 4dqy_C           33 GGKVFSATLGLVDIVKGTNSYYKLQLLEDDKENRYWIFRSWGRVGTVIGSNKLE-QMPSKEDAIEHFMKLYEEKTGNAWH  111 (506)
T ss_dssp             TTEESEEEEEEECTTTCCEEEEEEECC--------CEEEEEEETTSSCEEEEEE-CCSCSHHHHHHHHHHHHHHHSSCSS
T ss_pred             CCeEEEEEEEcccccCCCcceEEEEEEEcCCCCEEEEEEEECccCcccccceec-cCCCHHHHHHHHHHHHHHHhcCCcc
Confidence            56799999999999999999999999998888899999999999996 888875 7899999999999999         


Q ss_pred             --cCccCCCCceEEecccCccccccccccCCCCCccCCCCCCCCCcHHHHHHHHHHcCHHHHHHHHHHhccCCCCCCCCC
Q 043135           71 --QFTSYPKCYTWLERDYSANQTEESVVHEKPDSTINIQPQNTKLEPRVAKFLSLICNISMMKQVMMEIGYNANKLPLGT  148 (470)
Q Consensus        71 --~F~k~pgKY~~ve~d~~~~~~~~~~~~~~~~~~~~~~~~~s~L~~~v~~l~~~i~~~~~~~~~~~~~~~d~~~~Plg~  148 (470)
                        +|+++||||.+|++|++.++.+...    ..   ...+.+|+|+++||+||++|||+++|+++|.++++|+.+||||+
T Consensus       112 ~R~f~k~pgKy~~ve~d~~~~~~~~~~----~~---~~~~~~s~L~~~Vq~Li~lIfd~~~~~~~m~~~~~D~~k~PLGk  184 (506)
T 4dqy_C          112 SKNFTKYPKKFYPLEIDYGQDEEAVKK----LT---VNPGTKSKLPKPVQDLIKMIFDVESMKKAMVEYEIDLQKMPLGK  184 (506)
T ss_dssp             CSSCCCCTTCCEEECBC------------------------CCCSCHHHHHHHHHHSCHHHHHHHHHTTTBCCSSTTTSC
T ss_pred             ccCccccCCccceeecccccchhhhhh----hc---ccCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHhCCChhhCCCcc
Confidence              6999999999999999764333211    11   11234799999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHhcCC-ChHHHHHhhhhccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhHHHHHhhh
Q 043135          149 LSKSTILKGYDVLKRIADVIHLP-DRRKLEQLSGEFYTVIPHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLL  227 (470)
Q Consensus       149 Ls~~~i~~~~~iL~~i~~~l~~~-~~~~~~~ls~~fY~lIPh~~g~~~~~~~~i~~~~~l~~k~~ll~~L~di~~a~~l~  227 (470)
                      ||++||.+|+++|++|+++|++. ..+.+.+|||+||++|||+||++  +||+|++.++|+++++||++|.|||+|++|+
T Consensus       185 LS~~qI~~g~~vL~~i~~~l~~~~~~~~l~~lsn~fYtlIPh~fg~~--~pp~i~~~~~l~~k~~ll~~L~dieiA~~l~  262 (506)
T 4dqy_C          185 LSKRQIQAAYSILSEVQQAVSQGSSDSQILDLSNRFYTLIPHDFGMK--KPPLLNNADSVQAKAEMLDNLLDIEVAYSLL  262 (506)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCBCCTTS--CCCCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhEeCCccccCC--CCCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999875 45789999999999999999986  4689999999999999999999999999999


Q ss_pred             hcccc-cCCCchHHHHhccCceeeeecCCcccCCCccccccccccccchhhHHhhhhHHHHHHHHHhccCCCCCCccccc
Q 043135          228 EDDTQ-IQADPLYAYYQRLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIAKYLLNTHAKTHSSYSVDI  306 (470)
Q Consensus       228 ~~~~~-~~~~pld~~Y~~L~~~i~~l~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~~~~~~~~~~I  306 (470)
                      +.+.. ...||+|++|++|+|+|+||++   +   |+||                   ++|++|+++|++++|..++++|
T Consensus       263 ~~~~~~~~~~pld~~Y~~L~~~l~~L~~---~---s~Ey-------------------~~I~~~~~~T~~~~h~~~~~~I  317 (506)
T 4dqy_C          263 RGGSDDSSKDPIDVNYEKLKTDIKVVDR---D---SEEA-------------------EIIRKYVKNTHATTHNAYDLEV  317 (506)
T ss_dssp             SCSCCCTTSCHHHHHHHHTCEEEEECCT---T---CHHH-------------------HHHHHHHHHTCCSSCTTCCCCE
T ss_pred             hhhccCCCCCchHHHHHHhCcEEEECCC---C---ChHH-------------------HHHHHHHHhccCcccccCCcee
Confidence            87543 5689999999999999999999   7   9999                   9999999999999998889999


Q ss_pred             ceeEEEeechHhHHHHhhccCCCceEeeCCCCCcCHHHHhhcCCCCCCCCCCCcceeeeeeeeccccccccccccCCCCC
Q 043135          307 VQIFRVEREGETERFKKLSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPA  386 (470)
Q Consensus       307 ~~If~V~r~~e~~~F~~~~~~~N~~lL~HGT~~~n~~~Il~~Gl~i~p~~~~~~G~~fG~GIYfad~~skS~~Y~~~~~~  386 (470)
                      ++||||+|++++++|+.+++.+|+++|||||+.+|+++||++||+++|+.++.+|+|||+|||||++++||++||.++..
T Consensus       318 ~~I~rI~~~~e~~~f~~~k~~~N~~lL~HGT~~~n~~~Il~~Gf~~~~~~a~~~G~~fGkGiYFA~~askS~~Y~~~~~~  397 (506)
T 4dqy_C          318 IDIFKIEREGECQRYKPFKQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQG  397 (506)
T ss_dssp             EEEEEEEETTTTTTTHHHHSSSCEEEEEEECCTTTHHHHHHHCSCCCCSSSCCTTCSSCSSEEEBSSHHHHHTTSCCCSS
T ss_pred             EeEEEEccHHHHhhHHHhhcCCCceEEecCCChHhHHHHHhcCCCcCCccCCcCCceeeeeEEecchhhccccccCCCCC
Confidence            99999999999999998888999999999999999999999999999988999999999999999999999999998766


Q ss_pred             CCceEEEEEEEeeCCceecccCCCCCCCCCCCCeeeeccCCCCCCCCCCeEecCC---------------CcCCCcEEEE
Q 043135          387 ATAGVLLLCEVALGDMSELLSANSDADKLPDGKLITKGVGQTAPDPLEAETLEDG---------------GHLLYNEYIV  451 (470)
Q Consensus       387 ~~~~~mlLceValG~~~~~~~~~~~~~~~p~G~dSv~g~g~~~p~~~~~~~~~~G---------------~~l~~nEyVV  451 (470)
                      ++.++||||+|+||++++++.+++ +..||+|||||+|+|++.|+|++. +..||               ++|.||||||
T Consensus       398 ~~~~~mll~~V~lG~~~~~~~~~~-~~~~p~G~dSv~g~g~~~P~p~~~-~~~dGv~vP~G~~~~~~~~~~~l~ynEyiV  475 (506)
T 4dqy_C          398 DPIGLILLGEVALGNMYELKHASH-ISKLPKGKHSVKGLGKTTPDPSAN-ISLDGVDVPLGTGISSGVNDTSLLYNEYIV  475 (506)
T ss_dssp             SCEEEEEEEEEECCSEEEESSCCC-CSSCCTTCCEEEECCSEEECGGGC-EESSSCEECCCCEEECSCCCCSCSBCEEEE
T ss_pred             CCeEEEEEEEEecCCceecccchh-hhccCCCCceEEeCCcCcCCcccc-cccCCeEEECCCcccCCCCCCcccccceEE
Confidence            789999999999999999988774 689999999999999999999876 33333               6799999999


Q ss_pred             eeCCceeeeeEEEEEEEcC
Q 043135          452 YSVDQIRMRYVVQVNFKYK  470 (470)
Q Consensus       452 Yd~~Qv~~~YLI~~~~~~~  470 (470)
                      ||++||+|||||+|+|+|+
T Consensus       476 Yd~~Qir~rYLv~v~~~~~  494 (506)
T 4dqy_C          476 YDIAQVNLKYLLKLKFNFK  494 (506)
T ss_dssp             SSGGGEEEEEEEEEECCCC
T ss_pred             EchHHeeEEEEEEEEEEcc
Confidence            9999999999999999985
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A Back     alignment and structure
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A* Back     alignment and structure
>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A* Back     alignment and structure
>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens} Back     alignment and structure
>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* 4hlh_A* 4hki_A* 4hkn_A* 4hl5_A* ... Back     alignment and structure
>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens} Back     alignment and structure
>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* 4f1l_A* 4f1q_A* Back     alignment and structure
>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A* Back     alignment and structure
>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens} Back     alignment and structure
>2eoc_A Poly [ADP-ribose] polymerase 3; anti-parallel beta-sheet, cell cycle control, DNA damage, transcription, NAD+, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15, structural genomics structural genomics consortium, SGC; HET: 3AB; 2.70A {Homo sapiens} Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 470
d1gs0a2217 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase, 5e-68
d1efya2215 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase 5e-65
d1gs0a1134 a.41.1.1 (A:207-340) Domain of poly(ADP-ribose) po 2e-42
d1efya1135 a.41.1.1 (A:662-796) Domain of poly(ADP-ribose) po 7e-42
d2cr9a1126 d.297.1.1 (A:8-133) Poly [ADP-ribose] polymerase-1 7e-24
>d1gs0a2 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 217 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Poly(ADP-ribose) polymerase, C-terminal domain
domain: Poly(ADP-ribose) polymerase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  214 bits (546), Expect = 5e-68
 Identities = 114/243 (46%), Positives = 143/243 (58%), Gaps = 44/243 (18%)

Query: 245 LHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIAKYLLNTHAKTHSSYSV 304
           LHC L PL       H S  F+                    I++YL +THA TH  Y++
Sbjct: 1   LHCALRPL------DHESNEFK-------------------VISQYLQSTHAPTHKDYTM 35

Query: 305 DIVQIFRVEREGETERFKKLSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMF 364
            ++ +F VE+EGE E F++  +  NRMLLWHGSRL+NW GILS GLR+APPEAP TGYMF
Sbjct: 36  TLLDVFEVEKEGEKEAFRE--DLPNRMLLWHGSRLSNWVGILSHGLRVAPPEAPITGYMF 93

Query: 365 GKGVYFADMFSNSADYCNASPAATAGVLLLCEVALGDMSELLSANSDADKLPDGKLITKG 424
           GKG+YFADM S SA+YC AS     G+LLL EVALG  +ELL AN  A  L  GK  TKG
Sbjct: 94  GKGIYFADMSSKSANYCFASRLKNTGLLLLSEVALGQCNELLEANPKAQGLLRGKHSTKG 153

Query: 425 VGQTAPDPLEAETLED-----------------GGHLLYNEYIVYSVDQIRMRYVVQVNF 467
           +G+ AP P    TL                   G  L YNE+IVYS +Q+RMRY++++ F
Sbjct: 154 MGKMAPSPAHFITLNGSTVPLGPASDTGILNPEGYTLNYNEFIVYSPNQVRMRYLLKIQF 213

Query: 468 KYK 470
            + 
Sbjct: 214 NFL 216
>d1efya2 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 215 Back     information, alignment and structure
>d1gs0a1 a.41.1.1 (A:207-340) Domain of poly(ADP-ribose) polymerase {Mouse (Mus musculus) [TaxId: 10090]} Length = 134 Back     information, alignment and structure
>d1efya1 a.41.1.1 (A:662-796) Domain of poly(ADP-ribose) polymerase {Chicken (Gallus gallus) [TaxId: 9031]} Length = 135 Back     information, alignment and structure
>d2cr9a1 d.297.1.1 (A:8-133) Poly [ADP-ribose] polymerase-1, PARP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query470
d1gs0a2217 Poly(ADP-ribose) polymerase, C-terminal domain {Mo 100.0
d1efya2215 Poly(ADP-ribose) polymerase, C-terminal domain {Ch 100.0
d1gs0a1134 Domain of poly(ADP-ribose) polymerase {Mouse (Mus 100.0
d1efya1135 Domain of poly(ADP-ribose) polymerase {Chicken (Ga 100.0
d2cr9a1126 Poly [ADP-ribose] polymerase-1, PARP-1 {Human (Hom 99.91
>d1gs0a2 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Poly(ADP-ribose) polymerase, C-terminal domain
domain: Poly(ADP-ribose) polymerase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-50  Score=387.29  Aligned_cols=199  Identities=57%  Similarity=0.979  Sum_probs=184.0

Q ss_pred             cCceeeeecCCcccCCCccccccccccccchhhHHhhhhHHHHHHHHHhccCCCCCCcccccceeEEEeechHhHHHHhh
Q 043135          245 LHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIAKYLLNTHAKTHSSYSVDIVQIFRVEREGETERFKKL  324 (470)
Q Consensus       245 L~~~i~~l~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~~~~~~~~~~I~~If~V~r~~e~~~F~~~  324 (470)
                      |+|+|+||++   +   |+||                   ++|.+|+.+|+.++|..+.++|++||+|+|..++++|.. 
T Consensus         1 L~c~i~~l~~---~---s~ey-------------------~~I~~~~~~t~~~~~~~~~~~I~~I~~v~r~~e~~~~~~-   54 (217)
T d1gs0a2           1 LHCALRPLDH---E---SNEF-------------------KVISQYLQSTHAPTHKDYTMTLLDVFEVEKEGEKEAFRE-   54 (217)
T ss_dssp             TTEEEEECCT---T---SHHH-------------------HHHHHHHHHTCCTTCCSEEEEEEEEEEEEETTHHHHSCT-
T ss_pred             CCCEEEEcCC---C---CHHH-------------------HHHHHHHHhhCCCccCCCcceEEEEEEEcchhHHHHhhh-
Confidence            7999999999   7   9999                   999999999999888888999999999999999999864 


Q ss_pred             ccCCCceEeeCCCCCcCHHHHhhcCCCCCCCCCCCcceeeeeeeeccccccccccccCCCCCCCceEEEEEEEeeCCcee
Q 043135          325 SNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAATAGVLLLCEVALGDMSE  404 (470)
Q Consensus       325 ~~~~N~~lL~HGT~~~n~~~Il~~Gl~i~p~~~~~~G~~fG~GIYfad~~skS~~Y~~~~~~~~~~~mlLceValG~~~~  404 (470)
                       +.+|+++|||||+.+|+.+||++||+++++.++.+|+|||+|||||+++++|++||.++...+.++||||+||||++.+
T Consensus        55 -~~~n~~~LfHGT~~~n~~~Il~~Gf~~~~~~~~~~g~~fG~GiYfa~~~s~s~~y~~~~~~~~~~~m~l~~V~lG~~~~  133 (217)
T d1gs0a2          55 -DLPNRMLLWHGSRLSNWVGILSHGLRVAPPEAPITGYMFGKGIYFADMSSKSANYCFASRLKNTGLLLLSEVALGQCNE  133 (217)
T ss_dssp             -TCSCEEEEEEEECGGGHHHHHHHCSCCCCSSSCGGGSTTSSSEEEBSCHHHHHGGGCCCSSSCEEEEEEEEEECCSEEE
T ss_pred             -cCCceEEEEecccHHHHHHHHHcCCCCCCccCcccceeeeccceeccccccccccccCCcCCCeEEEEEEEEEecceee
Confidence             7889999999999999999999999999988888999999999999999999999998777889999999999999999


Q ss_pred             cccCCCCCCCCCCCCeeeeccCCCCCCCCCCeEe-----c------------CCCcCCCcEEEEeeCCceeeeeEEEEEE
Q 043135          405 LLSANSDADKLPDGKLITKGVGQTAPDPLEAETL-----E------------DGGHLLYNEYIVYSVDQIRMRYVVQVNF  467 (470)
Q Consensus       405 ~~~~~~~~~~~p~G~dSv~g~g~~~p~~~~~~~~-----~------------~G~~l~~nEyVVYd~~Qv~~~YLI~~~~  467 (470)
                      .+..+..+.+||+|+||++|+|++.|+|+....+     +            .|+.|.||||||||++||+|+|||+|+|
T Consensus       134 ~~~~~~~~~~~p~g~~sv~~~g~~~p~p~~~~~~~g~~vp~g~~~~s~~~~~~~~~l~~nEyVVy~~~Qv~~~YLi~~k~  213 (217)
T d1gs0a2         134 LLEANPKAQGLLRGKHSTKGMGKMAPSPAHFITLNGSTVPLGPASDTGILNPEGYTLNYNEFIVYSPNQVRMRYLLKIQF  213 (217)
T ss_dssp             ESSCCTTGGGGCTTCSEEEECCSEECCGGGCEEETTEEECCSCCEECCCCCSSSCCCSBCEEEESCGGGEEEEEEEEEEE
T ss_pred             eccCCcccccCCCCcceeeecccccCChhhccccCCeeccCCCccccCccCCCCCccccCeEEEEchhheeEEEEEEEEE
Confidence            8888888899999999999999999999776543     1            1246889999999999999999999999


Q ss_pred             EcC
Q 043135          468 KYK  470 (470)
Q Consensus       468 ~~~  470 (470)
                      +|+
T Consensus       214 ~~~  216 (217)
T d1gs0a2         214 NFL  216 (217)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            996
>d1efya2 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1gs0a1 a.41.1.1 (A:207-340) Domain of poly(ADP-ribose) polymerase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1efya1 a.41.1.1 (A:662-796) Domain of poly(ADP-ribose) polymerase {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2cr9a1 d.297.1.1 (A:8-133) Poly [ADP-ribose] polymerase-1, PARP-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure