Citrus Sinensis ID: 043153

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------9
Protein Sequence
SELITEKNPKKKKKKLKKMSGSVMLGESSSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIRYF
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEcccccHHHHHHHHHccccEEccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHEccHHHHccccccccEEcccHHEcc
Coil and Loop (DISEMBL)
seliteknpkkKKKKLKKMsgsvmlgessswsralvkispytfSAIGIAVAIGVSVLGAAWGIYITgssligaaikapritsknliryf
Flexible Loop (DISEMBL)
seliteknpkkkkkklkkmsgsvmlgessswsRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGssligaaikapritsknliryf
Low Complexity Region (SEG)
SELITEknpkkkkkklkkMSGSVMLGESSSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIRYF
Disordered region (IsUnstruct)
******************************WSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLI***
Disordered Region (DISOPRED)
********PKKKKKKLKKMSGSVMLGESSSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIRYF
Disordered Region (DISEMBL)
******************************WSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIRYF
Disordered Region (DISPRO)
*ELITEKNPKKKKKKLKKMSGSVMLGESSSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIRYF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
SELITEKNPKKKKKKLKKMSGSVMLGESSSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIRYF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	89	2.2.26 [Sep-21-2011]
P23968	213	V-type proton ATPase subu	yes	no	0.685	0.286	0.557	2e-14
O14046	199	Probable V-type proton AT	yes	no	0.685	0.306	0.508	8e-12
Q91V37	205	V-type proton ATPase 21 k	yes	no	0.584	0.253	0.615	2e-11
Q99437	205	V-type proton ATPase 21 k	yes	no	0.584	0.253	0.615	2e-11
Q2TA24	205	V-type proton ATPase 21 k	yes	no	0.584	0.253	0.615	2e-11

>sp|P23968|VATO_YEAST V-type proton ATPase subunit c'' OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VMA16 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 51/61 (83%)

Query: 26  GESSSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNL 85
           G   ++ + L++ SPY ++ +GIA+ +G+SV+GAAWGI+ITGSS+IGA ++APRIT+KNL
Sbjct: 42  GSDINFGKFLLRTSPYMWANLGIALCVGLSVVGAAWGIFITGSSMIGAGVRAPRITTKNL 101

Query: 86  I 86
           I
Sbjct: 102 I 102

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O14046|VATO_SCHPO Probable V-type proton ATPase 20 kDa proteolipid subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vma16 PE=3 SV=1

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 44/61 (72%)

Query: 26 GESSSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNL 85
          GES  +   L+  SPYT+  +GIA  +   ++GAAWGI+I G+S++G A+KAPRI +KNL
Sbjct: 28 GESFDFGSFLLDTSPYTWGLLGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNL 87

Query: 86 I 86
          I
Sbjct: 88 I 88

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q91V37|VATO_MOUSE V-type proton ATPase 21 kDa proteolipid subunit OS=Mus musculus GN=Atp6v0b PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/52 (61%), Positives = 43/52 (82%)

Query: 35 LVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLI 86
          L + SP+ +S +GI +AI +SV+GAAWGIYITGSS+IG  +KAPRI +KNL+
Sbjct: 41 LTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLV 92

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mus musculus (taxid: 10090)

>sp|Q99437|VATO_HUMAN V-type proton ATPase 21 kDa proteolipid subunit OS=Homo sapiens GN=ATP6V0B PE=2 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/52 (61%), Positives = 43/52 (82%)

Query: 35 LVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLI 86
          L + SP+ +S +GI +AI +SV+GAAWGIYITGSS+IG  +KAPRI +KNL+
Sbjct: 41 LTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLV 92

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Homo sapiens (taxid: 9606)

>sp|Q2TA24|VATO_BOVIN V-type proton ATPase 21 kDa proteolipid subunit OS=Bos taurus GN=ATP6V0B PE=2 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/52 (61%), Positives = 43/52 (82%)

Query: 35 LVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLI 86
          L + SP+ +S +GI +AI +SV+GAAWGIYITGSS+IG  +KAPRI +KNL+
Sbjct: 41 LTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLV 92

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
29423617	182	vacuolar membrane ATPase subunit c'' [Ci	0.764	0.373	1.0	1e-28
255546591	153	vacuolar ATP synthase proteolipid subuni	0.764	0.444	0.911	3e-26
359476098	222	PREDICTED: V-type proton ATPase 21 kDa p	0.910	0.364	0.746	1e-25
225442793	177	PREDICTED: V-type proton ATPase 21 kDa p	0.707	0.355	0.936	2e-24
449441944	182	PREDICTED: V-type proton ATPase 21 kDa p	0.764	0.373	0.867	3e-24
186515568	210	ATPase, F0/V0 complex, subunit C protein	0.764	0.323	0.852	5e-24
15236838	180	ATPase, F0/V0 complex, subunit C protein	0.764	0.377	0.852	8e-24
296081970	177	unnamed protein product [Vitis vinifera]	0.707	0.355	0.920	3e-23
351723981	176	uncharacterized protein LOC100527177 [Gl	0.707	0.357	0.904	4e-23
224141847	172	predicted protein [Populus trichocarpa]	0.662	0.343	0.966	7e-23

>gi|29423617|gb|AAO73433.1| vacuolar membrane ATPase subunit c'' [Citrus limon]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 19 MSGSVMLGESSSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAP 78
          MSGSVMLGESSSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAP
Sbjct: 1  MSGSVMLGESSSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAP 60

Query: 79 RITSKNLI 86
          RITSKNLI
Sbjct: 61 RITSKNLI 68

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546591|ref|XP_002514355.1| vacuolar ATP synthase proteolipid subunit, putative [Ricinus communis] gi|223546811|gb|EEF48309.1| vacuolar ATP synthase proteolipid subunit, putative [Ricinus communis]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/68 (91%), Positives = 66/68 (97%)

Query: 19 MSGSVMLGESSSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAP 78
          MSGS ++G +SSWSRALVKISPYTFSA+GIAVAIGVSVLGAAWGIYITGSSLIGAAIKAP
Sbjct: 1  MSGSAIVGNASSWSRALVKISPYTFSAVGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAP 60

Query: 79 RITSKNLI 86
          RITSKNLI
Sbjct: 61 RITSKNLI 68

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476098|ref|XP_002284783.2| PREDICTED: V-type proton ATPase 21 kDa proteolipid subunit [Vitis vinifera]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/83 (74%), Positives = 70/83 (84%), Gaps = 2/83 (2%)

Query: 4   ITEKNPKKKKKKLKKMSGSVMLGESSSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGI 63
           +   +P+K + +     G+VM G SSSW+ ALV+ISPYTFSAIGIAVAIGVSVLGAAWGI
Sbjct: 28  VNRVDPQKHRPE--PTYGAVMAGPSSSWAHALVQISPYTFSAIGIAVAIGVSVLGAAWGI 85

Query: 64  YITGSSLIGAAIKAPRITSKNLI 86
           YITGSSLIGAAIKAPRITSKNLI
Sbjct: 86  YITGSSLIGAAIKAPRITSKNLI 108

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442793|ref|XP_002285244.1| PREDICTED: V-type proton ATPase 21 kDa proteolipid subunit isoform 1 [Vitis vinifera] gi|297743370|emb|CBI36237.3| unnamed protein product [Vitis vinifera]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/63 (93%), Positives = 62/63 (98%)

Query: 24 MLGESSSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK 83
          M+G SSSWSRALV+ISPYTFSAIGIA+AIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK
Sbjct: 1  MVGASSSWSRALVQISPYTFSAIGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK 60

Query: 84 NLI 86
          NLI
Sbjct: 61 NLI 63

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441944|ref|XP_004138742.1| PREDICTED: V-type proton ATPase 21 kDa proteolipid subunit-like [Cucumis sativus] gi|449499588|ref|XP_004160858.1| PREDICTED: V-type proton ATPase 21 kDa proteolipid subunit-like [Cucumis sativus]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 59/68 (86%), Positives = 64/68 (94%)

Query: 19 MSGSVMLGESSSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAP 78
          MS +V+L  SSSW+RAL+ ISPYTFSAIGIA+AIGVSVLGAAWGIYITGSSLIGAAIKAP
Sbjct: 1  MSTAVVLTRSSSWARALINISPYTFSAIGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAP 60

Query: 79 RITSKNLI 86
          RITSKNLI
Sbjct: 61 RITSKNLI 68

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186515568|ref|NP_001119099.1| ATPase, F0/V0 complex, subunit C protein [Arabidopsis thaliana] gi|332660674|gb|AEE86074.1| ATPase, F0/V0 complex, subunit C protein [Arabidopsis thaliana]

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 58/68 (85%), Positives = 63/68 (92%)

Query: 19 MSGSVMLGESSSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAP 78
          MSG V LG +SSW  ALV+ISPYTFSAIGIA++IGVSVLGAAWGIYITGSSLIGAAI+AP
Sbjct: 1  MSGVVALGHASSWGAALVRISPYTFSAIGIAISIGVSVLGAAWGIYITGSSLIGAAIEAP 60

Query: 79 RITSKNLI 86
          RITSKNLI
Sbjct: 61 RITSKNLI 68

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236838|ref|NP_194979.1| ATPase, F0/V0 complex, subunit C protein [Arabidopsis thaliana] gi|297798708|ref|XP_002867238.1| hypothetical protein ARALYDRAFT_913194 [Arabidopsis lyrata subsp. lyrata] gi|4914450|emb|CAB43690.1| H+-transporting ATPase-like protein [Arabidopsis thaliana] gi|7270157|emb|CAB79970.1| H+-transporting ATPase-like protein [Arabidopsis thaliana] gi|14596151|gb|AAK68803.1| H+-transporting ATPase-like protein [Arabidopsis thaliana] gi|18377458|gb|AAL66895.1| unknown protein [Arabidopsis thaliana] gi|29423615|gb|AAO73432.1| vacuolar membrane ATPase subunit c'' [Arabidopsis thaliana] gi|297313074|gb|EFH43497.1| hypothetical protein ARALYDRAFT_913194 [Arabidopsis lyrata subsp. lyrata] gi|332660673|gb|AEE86073.1| ATPase, F0/V0 complex, subunit C protein [Arabidopsis thaliana]

 Score =  114 bits (285), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 58/68 (85%), Positives = 63/68 (92%)

Query: 19 MSGSVMLGESSSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAP 78
          MSG V LG +SSW  ALV+ISPYTFSAIGIA++IGVSVLGAAWGIYITGSSLIGAAI+AP
Sbjct: 1  MSGVVALGHASSWGAALVRISPYTFSAIGIAISIGVSVLGAAWGIYITGSSLIGAAIEAP 60

Query: 79 RITSKNLI 86
          RITSKNLI
Sbjct: 61 RITSKNLI 68

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081970|emb|CBI20975.3| unnamed protein product [Vitis vinifera]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/63 (92%), Positives = 60/63 (95%)

Query: 24 MLGESSSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK 83
          M G SSSW+ ALV+ISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK
Sbjct: 1  MAGPSSSWAHALVQISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK 60

Query: 84 NLI 86
          NLI
Sbjct: 61 NLI 63

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723981|ref|NP_001236018.1| uncharacterized protein LOC100527177 [Glycine max] gi|356552531|ref|XP_003544620.1| PREDICTED: V-type proton ATPase 21 kDa proteolipid subunit-like [Glycine max] gi|255631718|gb|ACU16226.1| unknown [Glycine max]

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 57/63 (90%), Positives = 59/63 (93%)

Query: 24 MLGESSSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK 83
          M+  SSSW RALV ISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAI+APRITSK
Sbjct: 1  MVAHSSSWGRALVAISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIRAPRITSK 60

Query: 84 NLI 86
          NLI
Sbjct: 61 NLI 63

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141847|ref|XP_002324273.1| predicted protein [Populus trichocarpa] gi|222865707|gb|EEF02838.1| predicted protein [Populus trichocarpa]

 Score =  111 bits (277), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 57/59 (96%), Positives = 59/59 (100%)

Query: 28 SSSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLI 86
          SSSWS+ALVKISPYTFSA+GIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLI
Sbjct: 2  SSSWSQALVKISPYTFSAVGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLI 60

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
TAIR|locus:2131337	210	AT4G32530 [Arabidopsis thalian	0.764	0.323	0.852	2.2e-25
TAIR|locus:2050286	178	AT2G25610 [Arabidopsis thalian	0.741	0.370	0.808	6.1e-23
SGD|S000001068	213	VMA16 "Subunit c'' of the vacu	0.685	0.286	0.557	3.3e-15
UNIPROTKB|E9PNU0	252	ATP6V0B "V-type proton ATPase	0.584	0.206	0.615	5.7e-15
ASPGD|ASPL0000066757	200	AN7603 [Emericella nidulans (t	0.685	0.305	0.557	1.8e-14
CGD|CAL0006331	196	orf19.4954 [Candida albicans (	0.685	0.311	0.573	3e-14
UNIPROTKB|E1C5X9	205	ATP6V0B "Uncharacterized prote	0.584	0.253	0.634	1e-13
GENEDB_PFALCIPARUM|MAL13P1.271	181	MAL13P1.271 "V-type ATPase, pu	0.651	0.320	0.517	1.6e-13
UNIPROTKB|Q8IDF7	181	MAL13P1.271 "V-type ATPase, pu	0.651	0.320	0.517	1.6e-13
UNIPROTKB|Q2TA24	205	ATP6V0B "V-type proton ATPase	0.584	0.253	0.615	2.7e-13

TAIR|locus:2131337 AT4G32530 [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 58/68 (85%), Positives = 63/68 (92%)

Query:    19 MSGSVMLGESSSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAP 78
             MSG V LG +SSW  ALV+ISPYTFSAIGIA++IGVSVLGAAWGIYITGSSLIGAAI+AP
Sbjct:     1 MSGVVALGHASSWGAALVRISPYTFSAIGIAISIGVSVLGAAWGIYITGSSLIGAAIEAP 60

Query:    79 RITSKNLI 86
             RITSKNLI
Sbjct:    61 RITSKNLI 68

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISS

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2050286 AT2G25610 [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 55/68 (80%), Positives = 61/68 (89%)

Query:    19 MSGSVMLGESSSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAP 78
             MSG  +   +SSW  ALV+ISPYTFSAIGIA++IGVSVLGAAWGIYITGSSLIGAAI+AP
Sbjct:     1 MSGVAI--HASSWGAALVRISPYTFSAIGIAISIGVSVLGAAWGIYITGSSLIGAAIEAP 58

Query:    79 RITSKNLI 86
             RITSKNLI
Sbjct:    59 RITSKNLI 66

GO:0009507 "chloroplast" evidence=ISM

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISS

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

SGD|S000001068 VMA16 "Subunit c'' of the vacuolar ATPase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 34/61 (55%), Positives = 51/61 (83%)

Query:    26 GESSSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNL 85
             G   ++ + L++ SPY ++ +GIA+ +G+SV+GAAWGI+ITGSS+IGA ++APRIT+KNL
Sbjct:    42 GSDINFGKFLLRTSPYMWANLGIALCVGLSVVGAAWGIFITGSSMIGAGVRAPRITTKNL 101

Query:    86 I 86
             I
Sbjct:   102 I 102

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM;IEA;IDA

GO:0016020 "membrane" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0007035 "vacuolar acidification" evidence=TAS

GO:0000220 "vacuolar proton-transporting V-type ATPase, V0 domain" evidence=TAS

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=TAS

UNIPROTKB|E9PNU0 ATP6V0B "V-type proton ATPase 21 kDa proteolipid subunit" [Homo sapiens (taxid:9606)]

 Score = 174 (66.3 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
 Identities = 32/52 (61%), Positives = 43/52 (82%)

Query:    35 LVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLI 86
             L + SP+ +S +GI +AI +SV+GAAWGIYITGSS+IG  +KAPRI +KNL+
Sbjct:    88 LTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLV 139

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ASPGD|ASPL0000066757 AN7603 [Emericella nidulans (taxid:162425)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 34/61 (55%), Positives = 48/61 (78%)

Query:    26 GESSSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNL 85
             GE  +  + L  +SPY ++ IGIA+ IG+SV+GAAWGI++TGSS++G  +KAPRI +KNL
Sbjct:    27 GEQFNVGQFLESVSPYVWANIGIAMCIGLSVVGAAWGIFLTGSSIVGGGVKAPRIRTKNL 86

Query:    86 I 86
             I
Sbjct:    87 I 87

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

CGD|CAL0006331 orf19.4954 [Candida albicans (taxid:5476)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 35/61 (57%), Positives = 47/61 (77%)

Query:    26 GESSSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNL 85
             GES +    L   SPY ++++GI   IG SV+GAAWGI+ITG+S++GA +KAPRIT+KNL
Sbjct:    25 GESFNIGEFLESTSPYMWASLGIGSCIGFSVVGAAWGIFITGTSILGAGVKAPRITTKNL 84

Query:    86 I 86
             I
Sbjct:    85 I 85

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1C5X9 ATP6V0B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 33/52 (63%), Positives = 43/52 (82%)

Query:    35 LVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLI 86
             L + SPY +S +GI +AI +SV+GAAWGIYITGSS+IG  +KAPRI +KNL+
Sbjct:    41 LTETSPYMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLV 92

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GENEDB_PFALCIPARUM|MAL13P1.271 MAL13P1.271 "V-type ATPase, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 30/58 (51%), Positives = 48/58 (82%)

Query:    29 SSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLI 86
             +SW   +  ISPY ++ +GIA+++ +S++GAAWGI+I G+S++GA++K+PRI SKNLI
Sbjct:     3 NSWFEIVRSISPYNWAMLGIALSLFLSIMGAAWGIFICGTSIVGASVKSPRIISKNLI 60

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=ISS

UNIPROTKB|Q8IDF7 MAL13P1.271 "V-type ATPase, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 30/58 (51%), Positives = 48/58 (82%)

Query:    29 SSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLI 86
             +SW   +  ISPY ++ +GIA+++ +S++GAAWGI+I G+S++GA++K+PRI SKNLI
Sbjct:     3 NSWFEIVRSISPYNWAMLGIALSLFLSIMGAAWGIFICGTSIVGASVKSPRIISKNLI 60

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=ISS

UNIPROTKB|Q2TA24 ATP6V0B "V-type proton ATPase 21 kDa proteolipid subunit" [Bos taurus (taxid:9913)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 32/52 (61%), Positives = 43/52 (82%)

Query:    35 LVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLI 86
             L + SP+ +S +GI +AI +SV+GAAWGIYITGSS+IG  +KAPRI +KNL+
Sbjct:    41 LTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLV 92

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	89
pfam00137	66	pfam00137, ATP-synt_C, ATP synthase subunit C	5e-06

>gnl|CDD|215743 pfam00137, ATP-synt_C, ATP synthase subunit C

 Score = 39.7 bits (94), Expect = 5e-06
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLI 86
           +A+G  +AIG++ LGA  GI I G++ I A  + P +  K LI
Sbjct: 1  LAALGAGLAIGLAALGAGIGIGIAGAAAIEAIARNPELFGKMLI 44

Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	89
KOG0233	196	consensus Vacuolar H+-ATPase V0 sector, subunit c'	99.79
TIGR01100	108	V_ATP_synt_C vacuolar ATP synthase 16 kDa proteoli	99.54
KOG0232	156	consensus Vacuolar H+-ATPase V0 sector, subunits c	99.43
PRK06558	159	V-type ATP synthase subunit K; Validated	98.84
PRK08344	157	V-type ATP synthase subunit K; Validated	98.56
PRK06649	143	V-type ATP synthase subunit K; Validated	98.31
PRK09621	141	V-type ATP synthase subunit K; Provisional	98.13
PF00137	66	ATP-synt_C: ATP synthase subunit C; InterPro: IPR0	98.05
PRK14893	161	V-type ATP synthase subunit K; Provisional	97.2
PRK06271	213	V-type ATP synthase subunit K; Validated	97.16
PRK06271	213	V-type ATP synthase subunit K; Validated	95.63
COG0636	79	AtpE F0F1-type ATP synthase, subunit c/Archaeal/va	95.09
PRK07354	81	F0F1 ATP synthase subunit C; Validated	92.63
PRK13469	79	F0F1 ATP synthase subunit C; Provisional	91.43
PRK14893	161	V-type ATP synthase subunit K; Provisional	91.19
PRK13471	85	F0F1 ATP synthase subunit C; Provisional	90.48
PRK08344	157	V-type ATP synthase subunit K; Validated	90.3
PRK06251	102	V-type ATP synthase subunit K; Validated	89.91
PRK06558	159	V-type ATP synthase subunit K; Validated	89.41
CHL00061	81	atpH ATP synthase CF0 C subunit	88.45
PRK09621	141	V-type ATP synthase subunit K; Provisional	87.58
PRK13468	82	F0F1 ATP synthase subunit C; Provisional	84.48
TIGR03322	86	alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C.	83.78
PRK07159	100	F0F1 ATP synthase subunit C; Validated	83.63
PRK06876	78	F0F1 ATP synthase subunit C; Validated	83.2
PRK05880	81	F0F1 ATP synthase subunit C; Validated	81.67
PRK07558	74	F0F1 ATP synthase subunit C; Validated	80.66
PRK08482	105	F0F1 ATP synthase subunit C; Validated	80.39

>KOG0233 consensus Vacuolar H+-ATPase V0 sector, subunit c'' [Energy production and conversion]

Probab=99.79  E-value=6.2e-21  Score=143.81  Aligned_cols=65  Identities=55%  Similarity=0.952  Sum_probs=62.6

Q ss_pred             ccccchHHhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhccccccC
Q 043153           25 LGESSSWSRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIRYF   89 (89)
Q Consensus        25 ~g~~~~~~~~~~~~sP~~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNLIpV~   89 (89)
                      .|+.++|++++.+.+||+|+.+||++|+.||++|||||++.+|+++.|+||++|||++||||+|.
T Consensus        24 ~g~~~~~g~fl~~tsp~~wa~lGI~l~ialSv~GaawGi~~tGssiiGggVkAPRI~TKnLisII   88 (196)
T KOG0233|consen   24 YGERFDLGWFLLRTSPYMWASLGIALCIALSVLGAAWGIYITGSSIIGGGVKAPRIKTKNLISII   88 (196)
T ss_pred             ccccceeeeeeccCChhHHHHhhHHHhhhhhhhhhheeEEEecceeecCcccCCcccccceEEEE
Confidence            36899999999999999999999999999999999999999999999999999999999999973

>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit

Probab=99.54  E-value=2e-15  Score=104.85  Aligned_cols=47  Identities=30%  Similarity=0.499  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhcccccc
Q 043153           42 TFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIRY   88 (89)
Q Consensus        42 ~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNLIpV   88 (89)
                      ||+++|+++|++||++|||||++++|++++++||++||+.+|||||+
T Consensus         1 ~~~~lG~a~a~~ls~iGsA~G~~~aG~~~a~~gv~~P~~~~k~lI~v   47 (108)
T TIGR01100         1 FFGVMGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPV   47 (108)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcCHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999997

The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.

>KOG0232 consensus Vacuolar H+-ATPase V0 sector, subunits c/c' [Energy production and conversion]

Probab=99.43  E-value=4e-14  Score=104.26  Aligned_cols=53  Identities=28%  Similarity=0.533  Sum_probs=51.2

Q ss_pred             hhhcCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhcccccc
Q 043153           35 LVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIRY   88 (89)
Q Consensus        35 ~~~~sP~~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNLIpV   88 (89)
                      +|.++|| |+.+|.+.+++||.+||||||+++|.+|+.+++++|++.||++|||
T Consensus         2 ~p~ya~f-f~~~g~~~a~v~s~lgaa~Gtak~g~GI~~~~v~rpelimkSiiPv   54 (156)
T KOG0232|consen    2 SPEYAPF-FGIMGAAAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPV   54 (156)
T ss_pred             CcchhhH-HHHhhHHHHHHHHHHHHHHhhhhcchhhhhhhhcChHHHHHHHHHH
Confidence            5789996 9999999999999999999999999999999999999999999997

>PRK06558 V-type ATP synthase subunit K; Validated

Probab=98.84  E-value=2.5e-09  Score=78.15  Aligned_cols=57  Identities=28%  Similarity=0.385  Sum_probs=51.2

Q ss_pred             HhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhcccccc
Q 043153           32 SRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIRY   88 (89)
Q Consensus        32 ~~~~~~~sP~~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNLIpV   88 (89)
                      .+++....|++|+++|++++++++.+|++||+.++|.+.+++..++|+..+|++|++
T Consensus         5 ~~~~~~~~~~~~~~lGa~laigla~iGsa~G~g~ag~a~~~~~a~~Pe~~~k~lI~~   61 (159)
T PRK06558          5 ANFFTQNGGAFFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGKALILQ   61 (159)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            344555567789999999999999999999999999999999999999999999875

>PRK08344 V-type ATP synthase subunit K; Validated

Probab=98.56  E-value=4e-08  Score=71.69  Aligned_cols=45  Identities=29%  Similarity=0.467  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhccccc
Q 043153           43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIR   87 (89)
Q Consensus        43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNLIp   87 (89)
                      |+++|+++|++++.+|+|||+.++|.+.++..+++||+.+|++|+
T Consensus         2 ~~~lG~~la~gls~iGsa~G~g~ag~aa~g~~~~~P~~~~~~li~   46 (157)
T PRK08344          2 YVALGAALAAGLAGAASSFGVGIAGSAAAGAVAEDEKNFRNALIL   46 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            789999999999999999999999999999999999999999985

>PRK06649 V-type ATP synthase subunit K; Validated

Probab=98.31  E-value=4e-07  Score=66.31  Aligned_cols=39  Identities=26%  Similarity=0.372  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhcc
Q 043153           43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKN   84 (89)
Q Consensus        43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KN   84 (89)
                      |+++|++++++|+.+|+|||+.++|.  +..|+.+||. +||
T Consensus         3 ~g~lG~a~a~~la~iGSA~G~g~aG~--Aa~Gv~~~~~-~~~   41 (143)
T PRK06649          3 IGLIGAAAALGISAIGSALGMGAAGM--AAIGAWKRCY-MQG   41 (143)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHccHhh-hcC
Confidence            79999999999999999999999999  8889999998 998

>PRK09621 V-type ATP synthase subunit K; Provisional

Probab=98.13  E-value=2.1e-06  Score=61.93  Aligned_cols=43  Identities=23%  Similarity=0.372  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhccc
Q 043153           43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNL   85 (89)
Q Consensus        43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNL   85 (89)
                      ++++|+++++++|.+|+|||+.++|.+-+|.-.++|+...|++
T Consensus         4 ~~~~G~a~a~~ls~iGsa~G~~~aG~a~~G~~~e~p~~~~~~~   46 (141)
T PRK09621          4 MSVVGPALAMGLAMIGSAIGCGMAGVASHAVMSRIDEGHGKII   46 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhhHH
Confidence            6889999999999999999999999999998888898777764

>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.05  E-value=3.5e-06  Score=52.80  Aligned_cols=46  Identities=35%  Similarity=0.593  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhcccccc
Q 043153           43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIRY   88 (89)
Q Consensus        43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNLIpV   88 (89)
                      |+++|.+++++++.+|++||+.+++.+.+++..++|++.+|.++.+
T Consensus         1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~~~~~~li~~   46 (66)
T PF00137_consen    1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPELFTKMLIGA   46 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhH
Confidence            6899999999999999999999999999999999999999988753

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....

>PRK14893 V-type ATP synthase subunit K; Provisional

Probab=97.20  E-value=0.00029  Score=51.78  Aligned_cols=46  Identities=28%  Similarity=0.486  Sum_probs=43.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhccccc
Q 043153           42 TFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIR   87 (89)
Q Consensus        42 ~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNLIp   87 (89)
                      -+.++|++++++++.+|++||+.++|...+++-.|+|+...+++|+
T Consensus         9 ~~~~lGagla~gla~iGa~iG~g~~~~~~~~~iar~Pe~~~~~li~   54 (161)
T PRK14893          9 ALAAIGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMFARGIIF   54 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            4789999999999999999999999999999999999999888775

>PRK06271 V-type ATP synthase subunit K; Validated

Probab=97.16  E-value=0.00024  Score=53.99  Aligned_cols=45  Identities=31%  Similarity=0.468  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhcccccc
Q 043153           44 SAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIRY   88 (89)
Q Consensus        44 g~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNLIpV   88 (89)
                      +.+|++++++++.+|++||+.++|...++.-.|+|+...|++|++
T Consensus         1 ~~igagla~glaa~Ga~~G~g~~g~a~~~~~ar~Pe~~~~~li~~   45 (213)
T PRK06271          1 GAIGAGLAVGIAGLGSGIGAGITGASGAGVVAEDPNKFGTAIVFQ   45 (213)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            357999999999999999999999999999999999999998864

>PRK06271 V-type ATP synthase subunit K; Validated

Probab=95.63  E-value=0.01  Score=45.13  Aligned_cols=47  Identities=23%  Similarity=0.334  Sum_probs=43.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhccccc
Q 043153           40 PYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIR   87 (89)
Q Consensus        40 P~~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNLIp   87 (89)
                      |.-|+++|++++++++.+ ++||.-++|.+-++.-.++||...|++|.
T Consensus        69 ~~g~~~lgagL~vGla~~-sa~g~G~~g~a~~~a~a~~p~~f~~~li~  115 (213)
T PRK06271         69 APEWAMLAAGLAVGLAGL-SAIGQGIAASAGLGAVAEDDSIFGKAMVF  115 (213)
T ss_pred             HhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            446999999999999999 67999999999999999999999999875

>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]

Probab=95.09  E-value=0.028  Score=36.96  Aligned_cols=44  Identities=32%  Similarity=0.569  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCcc----chhcccc
Q 043153           43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPR----ITSKNLI   86 (89)
Q Consensus        43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pr----i~~KNLI   86 (89)
                      |.++|.++++++..+|+++|.-+.+..-+.+-.+.|+    +.+|-++
T Consensus         8 ~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i   55 (79)
T COG0636           8 LALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFI   55 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHH
Confidence            6789999999999999999999999999999999999    6666543

>PRK07354 F0F1 ATP synthase subunit C; Validated

Probab=92.63  E-value=0.2  Score=33.07  Aligned_cols=42  Identities=19%  Similarity=0.325  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhcc
Q 043153           43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKN   84 (89)
Q Consensus        43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KN   84 (89)
                      +.++|.+++++++.+|+++|.-..+.+-+.+--|.|+...|-
T Consensus         8 ~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe~~~~~   49 (81)
T PRK07354          8 ASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKI   49 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHhhhh
Confidence            578899999999999999999999999999999999976553

>PRK13469 F0F1 ATP synthase subunit C; Provisional

Probab=91.43  E-value=0.31  Score=32.06  Aligned_cols=40  Identities=33%  Similarity=0.466  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhc
Q 043153           43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK   83 (89)
Q Consensus        43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~K   83 (89)
                      ..++|.++++ ++.+|+++|.-..+..-+++-.+.|+..-|
T Consensus        10 ~~~igagla~-laalGagig~G~~~~~a~~a~arqPe~~g~   49 (79)
T PRK13469         10 MSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPEASGK   49 (79)
T ss_pred             HHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCchHHHh
Confidence            5778999999 999999999999999999999999985433

>PRK14893 V-type ATP synthase subunit K; Provisional

Probab=91.19  E-value=0.24  Score=36.48  Aligned_cols=44  Identities=32%  Similarity=0.550  Sum_probs=39.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhccc
Q 043153           42 TFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNL   85 (89)
Q Consensus        42 ~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNL   85 (89)
                      -|.++|.+++++++.+|+++|.-+++..-++.=.+.|+...|-+
T Consensus        90 ~~~~lgagL~~Gla~~gsgig~G~~~~a~i~~iar~Pe~~~~~l  133 (161)
T PRK14893         90 GLVAIGAGAAIGFAGLGSGMGQGIASASSVGAVVEDPDMFARGI  133 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            48899999999999999999999999999999999999776644

>PRK13471 F0F1 ATP synthase subunit C; Provisional

Probab=90.48  E-value=0.51  Score=31.74  Aligned_cols=41  Identities=20%  Similarity=0.377  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhc
Q 043153           43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK   83 (89)
Q Consensus        43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~K   83 (89)
                      ..++|.+++++++.+|++.|.-..+...+++=.|.|+..-|
T Consensus        15 ~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~~g~   55 (85)
T PRK13471         15 GKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGT   55 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHHHhh
Confidence            56789999999999999999999999999999999986543

>PRK08344 V-type ATP synthase subunit K; Validated

Probab=90.30  E-value=0.34  Score=35.51  Aligned_cols=45  Identities=24%  Similarity=0.352  Sum_probs=40.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCc-cchhcccc
Q 043153           42 TFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAP-RITSKNLI   86 (89)
Q Consensus        42 ~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~P-ri~~KNLI   86 (89)
                      -|.++|.+++++++.+|+++|.-+.+.+-+.+--++| ++..+-+|
T Consensus        88 g~~~i~aGL~vGla~l~sgig~G~v~a~~i~~~ar~P~~l~~~~ii  133 (157)
T PRK08344         88 ALALLGAGLLVGLAELLSAIPQGIICASGIGALPRTPGKTFTQTII  133 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            4688999999999999999999999999999999999 87776554

>PRK06251 V-type ATP synthase subunit K; Validated

Probab=89.91  E-value=0.33  Score=33.71  Aligned_cols=42  Identities=21%  Similarity=0.378  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhccc
Q 043153           44 SAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNL   85 (89)
Q Consensus        44 g~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNL   85 (89)
                      .++|.++++++..+|+++|.-..|..-+++-.++|+...+-+
T Consensus        36 ~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g~~i   77 (102)
T PRK06251         36 INIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFGTVL   77 (102)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence            457889999999999999999999999999899999766544

>PRK06558 V-type ATP synthase subunit K; Validated

Probab=89.41  E-value=0.43  Score=35.05  Aligned_cols=45  Identities=18%  Similarity=0.116  Sum_probs=40.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhcccc
Q 043153           42 TFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLI   86 (89)
Q Consensus        42 ~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNLI   86 (89)
                      -|..+|.+++++++.+|++++.-++|.+-+.+--++|+...|-++
T Consensus        91 g~~~l~agL~vGl~~l~sgi~~G~~~a~~~~a~a~~pe~~~~~li  135 (159)
T PRK06558         91 GLAYFAACLPIAIVGLFSAISQGKVAAAGIQILAKRPEEFTKGII  135 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            578899999999999999999999999888888899998877554

>CHL00061 atpH ATP synthase CF0 C subunit

Probab=88.45  E-value=0.83  Score=30.34  Aligned_cols=41  Identities=20%  Similarity=0.348  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhc
Q 043153           43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK   83 (89)
Q Consensus        43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~K   83 (89)
                      ...+|.+++++++.+|+++|.-..+..-+.+-.|.|+..-|
T Consensus         8 ~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe~~~~   48 (81)
T CHL00061          8 ASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGK   48 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHhhh
Confidence            46789999999999999999999999999999999985433

>PRK09621 V-type ATP synthase subunit K; Provisional

Probab=87.58  E-value=0.67  Score=33.52  Aligned_cols=45  Identities=24%  Similarity=0.286  Sum_probs=40.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhcccc
Q 043153           42 TFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLI   86 (89)
Q Consensus        42 ~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNLI   86 (89)
                      -|..++.+++++++.+++++|.-+.+.+-+..=.+.|+...|-+|
T Consensus        77 ~~~~l~aGL~vGla~l~sgigqG~v~a~~i~a~arqPe~~~k~~i  121 (141)
T PRK09621         77 ALSGIAIGISVGIALLLSAIMQGKCCASAIQAYARSSEIYGKSFA  121 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            367788899999999999999999999999999999999888664

>PRK13468 F0F1 ATP synthase subunit C; Provisional

Probab=84.48  E-value=1.6  Score=28.99  Aligned_cols=40  Identities=18%  Similarity=0.257  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchh
Q 043153           43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITS   82 (89)
Q Consensus        43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~   82 (89)
                      ..++|.++++++..+|+++|.-+.+.+-+.+=-|.|+..-
T Consensus         8 ~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~~g   47 (82)
T PRK13468          8 VSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAG   47 (82)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHH
Confidence            5678999999999999999999999999999999998644

>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C

Probab=83.78  E-value=1.8  Score=29.10  Aligned_cols=39  Identities=18%  Similarity=0.240  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccch
Q 043153           43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRIT   81 (89)
Q Consensus        43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~   81 (89)
                      +.++|.++++++..+|+++|.-..+..-+.+--|.|+..
T Consensus         9 ~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~~   47 (86)
T TIGR03322         9 ASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDAS   47 (86)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH
Confidence            677899999999999999999999999999989999875

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.

>PRK07159 F0F1 ATP synthase subunit C; Validated

Probab=83.63  E-value=1.5  Score=30.48  Aligned_cols=40  Identities=20%  Similarity=0.325  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhc
Q 043153           43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK   83 (89)
Q Consensus        43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~K   83 (89)
                      +.++|.++++ +..+|+++|.-..+..-+.+--|.|+...+
T Consensus        31 ~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPea~~~   70 (100)
T PRK07159         31 AAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPEAQKQ   70 (100)
T ss_pred             HHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChHHHHh
Confidence            4678888888 899999999999999999999999986443

>PRK06876 F0F1 ATP synthase subunit C; Validated

Probab=83.20  E-value=1.9  Score=28.57  Aligned_cols=41  Identities=37%  Similarity=0.632  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhc
Q 043153           43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK   83 (89)
Q Consensus        43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~K   83 (89)
                      ..++|.++++++..+|++.|.-..+..-+.+=-|.|+..-|
T Consensus         7 ~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~~~~   47 (78)
T PRK06876          7 LTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPM   47 (78)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHh
Confidence            46788899999999999999999999999999999986543

>PRK05880 F0F1 ATP synthase subunit C; Validated

Probab=81.67  E-value=2.4  Score=28.29  Aligned_cols=41  Identities=22%  Similarity=0.368  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhc
Q 043153           43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK   83 (89)
Q Consensus        43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~K   83 (89)
                      ..++|.++++++..+|++.|+-......+-+--|.|+..-+
T Consensus         8 ~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa~~~   48 (81)
T PRK05880          8 GALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGR   48 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHh
Confidence            46789999999999999999999999999888899986543

>PRK07558 F0F1 ATP synthase subunit C; Validated

Probab=80.66  E-value=2.5  Score=27.72  Aligned_cols=38  Identities=24%  Similarity=0.393  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccch
Q 043153           43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRIT   81 (89)
Q Consensus        43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~   81 (89)
                      ..++|.++++ +..+|++.|+-..+...+.+=.|.|+..
T Consensus         6 ~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe~~   43 (74)
T PRK07558          6 LKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPSAA   43 (74)
T ss_pred             HHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCchHH
Confidence            5678888888 9999999999999999999999999854

>PRK08482 F0F1 ATP synthase subunit C; Validated

Probab=80.39  E-value=2.8  Score=29.21  Aligned_cols=41  Identities=24%  Similarity=0.527  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhc
Q 043153           43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK   83 (89)
Q Consensus        43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~K   83 (89)
                      ..++|.++++++..+|++.|.-..+...+.+--|.|+..-+
T Consensus        31 ~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~~~~   71 (105)
T PRK08482         31 YSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGK   71 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHh
Confidence            56789999999999999999999999999999999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	89
2bl2_A	156	V-type sodium ATP synthase subunit K; V-type ATPas	3e-08
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04

>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A* Length = 156

 Score = 46.8 bits (111), Expect = 3e-08
 Identities = 12/52 (23%), Positives = 23/52 (44%)

Query: 35 LVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLI 86
          + +     F+ + +A A   S +G+A G+ +TG +        P    + LI
Sbjct: 6  ITQNGGMVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALI 57

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 36.9 bits (84), Expect = 2e-04
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 16/45 (35%)

Query: 12 KKKKLKKMSGSVMLGESSSWSRALVKISPYTFSAIGIAVAIGVSV 56
          +K+ LKK+  S+ L    S        +P        A+AI  ++
Sbjct: 18 EKQALKKLQASLKLYADDS--------AP--------ALAIKATM 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	89
2bl2_A	156	V-type sodium ATP synthase subunit K; V-type ATPas	99.33
2bl2_A	156	V-type sodium ATP synthase subunit K; V-type ATPas	95.66
1wu0_A	72	ATP synthase C chain; ATPase, membrane protein, hy	95.12
2xqu_A	82	C15_RING, ATP synthase C chain; membrane protein,	94.99
2x2v_A	69	ATP synthase subunit C; membrane protein, ION tran	94.12
2wgm_A	89	ATP synthase subunit C, sodium ION specific; F1FO-	88.73
1a91_A	79	F1FO ATPase subunit C; membrane protein, hydrogen	87.92

>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*

Probab=99.33  E-value=7.5e-13  Score=95.03  Aligned_cols=57  Identities=21%  Similarity=0.264  Sum_probs=53.6

Q ss_pred             HhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhcccccc
Q 043153           32 SRALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIRY   88 (89)
Q Consensus        32 ~~~~~~~sP~~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNLIpV   88 (89)
                      .+++.+++|++|+++|++++++|+++|+|||+.++|.+++++.+++||+.+|++||+
T Consensus         3 ~~~~~~~~~~~~~~lGa~la~~ls~iGaa~G~~~aG~a~~g~~~~~P~~~~k~li~~   59 (156)
T 2bl2_A            3 DYLITQNGGMVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQ   59 (156)
T ss_dssp             HHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            456778888899999999999999999999999999999999999999999999985

>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*

Probab=95.66  E-value=0.008  Score=42.80  Aligned_cols=46  Identities=17%  Similarity=0.158  Sum_probs=42.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhccccc
Q 043153           42 TFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLIR   87 (89)
Q Consensus        42 ~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~KNLIp   87 (89)
                      -|.++|.+++++++.+|+++|+-+.+.+.+.+-.+.||...|.+|.
T Consensus        89 g~~~igagl~~Gla~lgagigiG~v~~~~i~a~arqPe~~~~~ii~  134 (156)
T 2bl2_A           89 GLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEHATKGIIF  134 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence            4778999999999999999999999999999999999999987653

>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}

Probab=95.12  E-value=0.02  Score=35.97  Aligned_cols=41  Identities=24%  Similarity=0.407  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhc
Q 043153           43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK   83 (89)
Q Consensus        43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~K   83 (89)
                      +.++|.+++++++.+|+++|+-+.+..-+.+-.+.|+...|
T Consensus         3 ~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe~~~~   43 (72)
T 1wu0_A            3 LGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPV   43 (72)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhh
Confidence            56789999999999999999999999999999999996554

>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A

Probab=94.99  E-value=0.014  Score=37.60  Aligned_cols=40  Identities=20%  Similarity=0.357  Sum_probs=36.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccch
Q 043153           42 TFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRIT   81 (89)
Q Consensus        42 ~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~   81 (89)
                      .+.++|.+++++++.+|+++|+-+.+..-+.+-.+.|+..
T Consensus         8 ~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe~~   47 (82)
T 2xqu_A            8 AASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAE   47 (82)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHh
Confidence            4788999999999999999999999999999999999953

>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}

Probab=94.12  E-value=0.049  Score=33.95  Aligned_cols=39  Identities=21%  Similarity=0.387  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchhc
Q 043153           45 AIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSK   83 (89)
Q Consensus        45 ~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~K   83 (89)
                      ++|.+++++++.+|+++|+-+.+..-+.+-.+.|+..-|
T Consensus         3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe~~~~   41 (69)
T 2x2v_A            3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGT   41 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhh
Confidence            578899999999999999999999999999999996554

>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*

Probab=88.73  E-value=0.19  Score=32.69  Aligned_cols=38  Identities=18%  Similarity=0.339  Sum_probs=34.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccc
Q 043153           42 TFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRI   80 (89)
Q Consensus        42 ~fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri   80 (89)
                      .+.++|.++++ ++.+|+++|+-+.+..-+.+--+.|+.
T Consensus        12 ~~~~igaGla~-la~iGagig~G~v~~~ai~a~arqPe~   49 (89)
T 2wgm_A           12 AASAVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPEA   49 (89)
T ss_dssp             HHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCchH
Confidence            36788999999 999999999999999999998999995

>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A

Probab=87.92  E-value=0.66  Score=29.50  Aligned_cols=39  Identities=31%  Similarity=0.534  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchh
Q 043153           44 SAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITS   82 (89)
Q Consensus        44 g~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~   82 (89)
                      +.++.+++++++.+|+++|+-+.+..-+.+--+.|+..-
T Consensus         9 ~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe~~~   47 (79)
T 1a91_A            9 LYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIP   47 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHh
Confidence            457778888899999999999999999999999999543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	89
d1c99a_	79	F1F0 ATP synthase subunit C {Escherichia coli [Tax	86.27

>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: F1F0 ATP synthase subunit C
family: F1F0 ATP synthase subunit C
domain: F1F0 ATP synthase subunit C
species: Escherichia coli [TaxId: 562]

Probab=86.27  E-value=0.4  Score=29.48  Aligned_cols=40  Identities=30%  Similarity=0.537  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCccchh
Q 043153           43 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITS   82 (89)
Q Consensus        43 fg~lGIa~ai~lS~~GAAyGi~ktG~sI~g~gV~~Pri~~   82 (89)
                      +.++|.+++++++.+|++.|+-..+..-+-+--|.|+..-
T Consensus         8 ~~~l~agl~~gl~aiG~giG~G~~~~~ale~~ARqPE~~~   47 (79)
T d1c99a_           8 LLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIP   47 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHH
Confidence            5678999999999999999999999998888889997654