Citrus Sinensis ID: 043175

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MESLMGFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVCYFFCKPCYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIGWVMHEYHVNDDPSYKV
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHcccccccccEEcccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccEEEEEEEEEEEcccccccccccccEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHccccccEEEEEcEEccccccccccHHccccccccEEEEEccccccccccccccHHcccccEEEccccccEEccccEEEEEEEEEEEEcccccccccccEEEEEEEccccccccc
Coil and Loop (DISEMBL)
meslmgfrfqpsnEQIFCLLekkrlnphfshhtikdiddicglepwdlagasktesedrvcyffckpcykykkstrahrrtnagywkvtgrgskiktrnglsgtKKILTFqyhgpaskkakiGWVMHeyhvnddpsykv
Flexible Loop (DISEMBL)
meslmgfrfqpsNEQIFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGasktesedrvCYFFCKPCykykkstrahrrtnagywkvtgrgskiktrnglsgtkkiLTFQYHGPASKKAKIGWVMHEYhvnddpsykv
Low Complexity Region (SEG)
MESLMGFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVcyffckpcykykkSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIGWVMHEYHVNDDPSYKV
Disordered region (IsUnstruct)
************NEQIFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVCYFFCKPCYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIGWVMHEYHV********
Disordered Region (DISOPRED)
MESLMGFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVCYFFCKPCYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIGWVMHEY**********
Disordered Region (DISEMBL)
MESLMGFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVCYFFCKPCYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIGWVMHEYHVNDDPSYKV
Disordered Region (DISPRO)
*ESLMGFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVCYFFCKPCYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIGWVMHEYHVND******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESLMGFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVCYFFCKPCYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIGWVMHEYHVNDDPSYKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
O81913	359	NAC domain-containing pro	no	no	0.906	0.350	0.385	4e-18
Q9FLJ2	336	NAC domain-containing pro	no	no	0.913	0.377	0.409	8e-18
O81914	362	NAC domain-containing pro	no	no	0.913	0.350	0.375	9e-18
Q9FWX2	395	NAC domain-containing pro	no	no	0.913	0.321	0.412	1e-17
Q84K00	567	NAC domain-containing pro	no	no	0.913	0.223	0.376	2e-17
Q9FRV4	310	Protein CUP-SHAPED COTYLE	no	no	0.949	0.425	0.418	1e-16
O04017	375	Protein CUP-SHAPED COTYLE	no	no	0.920	0.341	0.4	2e-15
Q5CD17	396	NAC domain-containing pro	no	no	0.877	0.308	0.370	2e-15
Q7GCL7	489	NAC domain-containing pro	no	no	0.949	0.269	0.338	2e-15
Q84WP6	365	NAC domain-containing pro	no	no	0.913	0.347	0.366	3e-15

>sp|O81913|NAC4_ARATH NAC domain-containing protein 4 OS=Arabidopsis thaliana GN=NAC004 PE=2 SV=2

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 72/135 (53%), Gaps = 9/135 (6%)

Query: 1   MESLMGFRFQPSNEQIFC-LLEKKRLNPHFSH-HTIKDIDDICGLEPWDLAGASKTESED 58
           M + +GFRF+P++E+I    L  K L+   SH   +    DIC  EPWDL   S  +S D
Sbjct: 1   MMNPVGFRFRPNDEEIVDHYLRPKNLDSDTSHVDEVISTVDICSFEPWDLPSKSMIKSRD 60

Query: 59  RVCYFFCKPCYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLS---GTKKILTFQYHGP 115
            V YFF     KY +  +  RRTN+G+WK TG+   +  + G     G K++L F+    
Sbjct: 61  GVWYFFSVKEMKYNRGDQQRRRTNSGFWKKTGKTMTVMRKRGNREKIGEKRVLVFKNRD- 119

Query: 116 ASKKAKIGWVMHEYH 130
               +K  WVMHEYH
Sbjct: 120 ---GSKTDWVMHEYH 131

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLJ2|NC100_ARATH NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 71/132 (53%), Gaps = 5/132 (3%)

Query: 1   MESLMGFRFQPSNEQIFC-LLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDR 59
           M+   GFRF P++E++    L KK L+  FS   I ++D +   EPW+L   +K   ++ 
Sbjct: 14  MDLPPGFRFHPTDEELITHYLHKKVLDTSFSAKAIGEVD-LNKSEPWELPWMAKMGEKE- 71

Query: 60  VCYFFCKPCYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKK 119
             YFFC    KY    R +R T AGYWK TG+  +I     L G KK L F Y G A K 
Sbjct: 72  -WYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVF-YRGRAPKG 129

Query: 120 AKIGWVMHEYHV 131
            K  WVMHEY +
Sbjct: 130 QKTNWVMHEYRL 141

Arabidopsis thaliana (taxid: 3702)

>sp|O81914|NAC5_ARATH NAC domain-containing protein 5 OS=Arabidopsis thaliana GN=NAC005 PE=2 SV=2

 Score = 88.6 bits (218), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 74/136 (54%), Gaps = 9/136 (6%)

Query: 1   MESLMGFRFQPSNEQIFCL-LEKKRLNPHFSH-HTIKDIDDICGLEPWDLAGASKTESED 58
           M + +GFRF+P++ +I  + L  K L  + SH   +    DIC  +PWDL   S+ ++ D
Sbjct: 1   MANPVGFRFRPTDGEIVDIYLRPKNLESNTSHVDEVISTVDICSFDPWDLPSHSRMKTRD 60

Query: 59  RVCYFFCKPCYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLS---GTKKILTFQYHGP 115
           +V YFF +   KY K  R  R+T +G+WK TG    I  + G     G K++L F+ HG 
Sbjct: 61  QVWYFFGRKENKYGKGDRQIRKTKSGFWKKTGVTMDIMRKTGDREKIGEKRVLVFKNHG- 119

Query: 116 ASKKAKIGWVMHEYHV 131
               +K  W MHEYH 
Sbjct: 120 ---GSKSDWAMHEYHA 132

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWX2|NAC7_ARATH NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 69/131 (52%), Gaps = 4/131 (3%)

Query: 6   GFRFQPSNEQIF-CLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRV-CYF 63
           GFRF P++E++    L KK  +       IKDID +  +EPWDL    K   E++   YF
Sbjct: 10  GFRFHPTDEELVDYYLRKKVASKRIEIDFIKDID-LYKIEPWDLQELCKIGHEEQSDWYF 68

Query: 64  FCKPCYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIG 123
           F     KY   TR +R T AG+WK TGR   I  R+ L G +K L F Y G A    K  
Sbjct: 69  FSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHSLIGMRKTLVF-YKGRAPNGQKSD 127

Query: 124 WVMHEYHVNDD 134
           W+MHEY +  D
Sbjct: 128 WIMHEYRLETD 138

Transcription factor probably involved in xylem formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84K00|NAC78_ARATH NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 72/130 (55%), Gaps = 3/130 (2%)

Query: 6   GFRFQPSNEQIF-CLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVCYFF 64
           GFRF P++E++    L++K  N  F    I  + DI   EPWDL   SK +S D   YFF
Sbjct: 12  GFRFHPTDEELVRYYLKRKVCNKPFKFDAIS-VTDIYKSEPWDLPDKSKLKSRDLEWYFF 70

Query: 65  CKPCYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIGW 124
                KY   ++ +R T  GYWK TG+  +I+  + + G KK L + + G A +  +  W
Sbjct: 71  SMLDKKYSNGSKTNRATEKGYWKTTGKDREIRNGSRVVGMKKTLVY-HKGRAPRGERTNW 129

Query: 125 VMHEYHVNDD 134
           VMHEY ++D+
Sbjct: 130 VMHEYRLSDE 139

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FRV4|NAC54_ARATH Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thaliana GN=NAC054 PE=1 SV=1

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/141 (41%), Positives = 77/141 (54%), Gaps = 9/141 (6%)

Query: 2   ESLM--GFRFQPSNEQIFCL-LEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESED 58
           ESLM  GFRF P++E++    L KK L+ +FS   I  +D +   EPW+L    K +  +
Sbjct: 17  ESLMPPGFRFHPTDEELITYYLLKKVLDSNFSCAAISQVD-LNKSEPWELP--EKAKMGE 73

Query: 59  RVCYFFCKPCYKYKKSTRAHRRTNAGYWKVTGRGSKIKTR--NGLSGTKKILTFQYHGPA 116
           +  YFF     KY    R +R T AGYWK TG+  +IK+     L G KK L F Y G A
Sbjct: 74  KEWYFFTLRDRKYPTGLRTNRATEAGYWKATGKDREIKSSKTKSLLGMKKTLVF-YKGRA 132

Query: 117 SKKAKIGWVMHEYHVNDDPSY 137
            K  K  WVMHEY ++   SY
Sbjct: 133 PKGEKSCWVMHEYRLDGKFSY 153

Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Seems to act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|O04017|NAC98_ARATH Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/135 (40%), Positives = 71/135 (52%), Gaps = 7/135 (5%)

Query: 6   GFRFQPSNEQIFC-LLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVCYFF 64
           GFRF P++E++    L +K L+  FS   I ++D +   EPW L G +K   ++   YFF
Sbjct: 20  GFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVD-LNKCEPWQLPGRAKMGEKE--WYFF 76

Query: 65  CKPCYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRN--GLSGTKKILTFQYHGPASKKAKI 122
                KY    R +R T AGYWK TG+  +I +     L G KK L F Y G A K  K 
Sbjct: 77  SLRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKTCALVGMKKTLVF-YKGRAPKGEKS 135

Query: 123 GWVMHEYHVNDDPSY 137
            WVMHEY +    SY
Sbjct: 136 NWVMHEYRLEGKFSY 150

Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5CD17|NAC77_ORYSJ NAC domain-containing protein 77 OS=Oryza sativa subsp. japonica GN=NAC77 PE=2 SV=2

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 68/143 (47%), Gaps = 21/143 (14%)

Query: 6   GFRFQPSN-EQIFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVCYFF 64
           GFRF P++ E I   L +K LNP F+   I ++D +   EPWDL   SK +  ++  YFF
Sbjct: 22  GFRFHPTDAEVILSYLLQKLLNPSFTSLPIGEVD-LNKCEPWDLP--SKAKMGEKEWYFF 78

Query: 65  CKPCYKYKKSTRAHRRTNAGYWKVTGR----------------GSKIKTRNGLSGTKKIL 108
                KY    R +R T  GYWK TG+                G     +  L G KK L
Sbjct: 79  SHKDMKYPTGMRTNRATKEGYWKATGKDREIFRQPAAVNTSSYGGSSNKKKQLVGMKKTL 138

Query: 109 TFQYHGPASKKAKIGWVMHEYHV 131
            F Y G A K  K  WVMHE+ +
Sbjct: 139 VF-YMGRAPKGTKTNWVMHEFRL 160

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7GCL7|NAC74_ORYSJ NAC domain-containing protein 74 OS=Oryza sativa subsp. japonica GN=NAC74 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 7/139 (5%)

Query: 1   MESLM------GFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKT 54
           MESL       GF F P + ++     KK+++     + I    DI   EPWDL      
Sbjct: 1   MESLRDMVLPPGFGFHPKDTELISHYLKKKIHGQKIEYEIIPEVDIYKHEPWDLPAKCDV 60

Query: 55  ESEDRVCYFFCKPCYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHG 114
            ++D   +FF     KY   +R++R T AGYWK TG+   IK      GTKK L F    
Sbjct: 61  PTQDNKWHFFAARDRKYPNGSRSNRATVAGYWKSTGKDRAIKMGKQTIGTKKTLVFHEGR 120

Query: 115 PASKKAKIGWVMHEYHVND 133
           P + + +  W+MHEY++++
Sbjct: 121 PPTGR-RTEWIMHEYYIDE 138

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84WP6|NAC43_ARATH NAC domain-containing protein 43 OS=Arabidopsis thaliana GN=NAC043 PE=2 SV=2

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 67/131 (51%), Gaps = 4/131 (3%)

Query: 6   GFRFQPSNEQIFCLLEKKRLNP-HFSHHTIKDIDDICGLEPWDLAGASKT-ESEDRVCYF 63
           GFRF P+ E++     +K++N        I+D+D +  LEPWD+    K   +     YF
Sbjct: 19  GFRFHPTEEELLQYYLRKKVNSIEIDLDVIRDVD-LNKLEPWDIQEMCKIGTTPQNDWYF 77

Query: 64  FCKPCYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIG 123
           F     KY   TR +R T AG+WK TGR   I +     G +K L F Y G A    K  
Sbjct: 78  FSHKDKKYPTGTRTNRATAAGFWKATGRDKIIYSNGRRIGMRKTLVF-YKGRAPHGQKSD 136

Query: 124 WVMHEYHVNDD 134
           W+MHEY ++D+
Sbjct: 137 WIMHEYRLDDN 147

Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulates the secondary cell wall lignification of other tissues.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
224118488	316	NAC domain protein, IPR003441 [Populus t	0.920	0.405	0.427	6e-21
297798362	507	predicted protein [Arabidopsis lyrata su	0.913	0.250	0.419	3e-20
225453680	560	PREDICTED: uncharacterized protein LOC10	0.913	0.226	0.442	5e-20
296089037	335	unnamed protein product [Vitis vinifera]	0.913	0.379	0.442	5e-20
42567421	512	NAC transcription factor-like 9 [Arabido	0.920	0.25	0.416	6e-20
224061527	537	NAC domain protein, IPR003441 [Populus t	0.956	0.247	0.385	6e-20
186516558	534	NAC transcription factor-like 9 [Arabido	0.913	0.237	0.419	6e-20
334187196	533	NAC transcription factor-like 9 [Arabido	0.913	0.238	0.419	6e-20
302399031	850	NAC domain class transcription factor [M	0.920	0.150	0.405	7e-20
224063973	208	NAC domain protein, IPR003441 [Populus t	0.892	0.596	0.407	2e-19

>gi|224118488|ref|XP_002317831.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222858504|gb|EEE96051.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 56/131 (42%), Positives = 78/131 (59%), Gaps = 3/131 (2%)

Query: 5   MGFRFQPSNEQIFCLLEKKRLNPHFSH-HTIKDIDDICGLEPWDLAGASKTESEDRVCYF 63
           +GFRF+PS+E++     + ++N        I++ID +C  EPWDL G S  E++D   +F
Sbjct: 13  LGFRFRPSDEELVNYYLRHKINGKDDKVRVIREID-VCKWEPWDLPGLSIIENKDPEWFF 71

Query: 64  FCKPCYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIG 123
           FC    KY   +R +R TNAGYWK TG+  KIK+ N L G KK L F Y G A K  +  
Sbjct: 72  FCPLDRKYPNGSRQNRATNAGYWKATGKDRKIKSGNRLIGMKKTLVF-YTGRAPKGKRTN 130

Query: 124 WVMHEYHVNDD 134
           WV+HEY   ++
Sbjct: 131 WVVHEYRATEE 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798362|ref|XP_002867065.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297312901|gb|EFH43324.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/131 (41%), Positives = 78/131 (59%), Gaps = 4/131 (3%)

Query: 1   MESL-MGFRFQPSNEQIFCLLEKKRLN-PHFSHHTIKDIDDICGLEPWDLAGASKTESED 58
           MESL +GFRF+P++E++     + ++N  H     I DID +C  EPWDL   S  +++D
Sbjct: 6   MESLPLGFRFRPTDEELVNHYLRLKINGRHSDVRVIPDID-VCKWEPWDLPALSVIKTDD 64

Query: 59  RVCYFFCKPCYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASK 118
              +FFC    KY    R++R T++GYWK TG+   IK++  L G KK L F Y G A K
Sbjct: 65  PEWFFFCPRDRKYPNGHRSNRATDSGYWKATGKDRSIKSKKTLIGMKKTLVF-YRGRAPK 123

Query: 119 KAKIGWVMHEY 129
             +  W+MHEY
Sbjct: 124 GERTNWIMHEY 134

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453680|ref|XP_002268892.1| PREDICTED: uncharacterized protein LOC100252386 [Vitis vinifera]

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/131 (44%), Positives = 75/131 (57%), Gaps = 4/131 (3%)

Query: 2   ESL-MGFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRV 60
           ESL +GFRF P++E++     K ++    SH  I    D+C  EPWDL   S  ++ D  
Sbjct: 12  ESLPVGFRFHPTDEELVDHYLKLKILGMNSHVDIIPEVDVCKWEPWDLPVLSVIQTNDPE 71

Query: 61  CYFFCKPCYKYKKSTRAHRRTNAGYWKVTGRGSKIKTR--NGLSGTKKILTFQYHGPASK 118
            +FFC P YKY    R++R T AGYWK TG+   IK+R    L GTKK L F Y G A +
Sbjct: 72  WFFFCPPDYKYPTGRRSNRATEAGYWKPTGKDRNIKSRATKELLGTKKTLVF-YRGRAPQ 130

Query: 119 KAKIGWVMHEY 129
             +  WVMHEY
Sbjct: 131 SVRTNWVMHEY 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089037|emb|CBI38740.3| unnamed protein product [Vitis vinifera]

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/131 (44%), Positives = 75/131 (57%), Gaps = 4/131 (3%)

Query: 2   ESL-MGFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRV 60
           ESL +GFRF P++E++     K ++    SH  I    D+C  EPWDL   S  ++ D  
Sbjct: 4   ESLPVGFRFHPTDEELVDHYLKLKILGMNSHVDIIPEVDVCKWEPWDLPVLSVIQTNDPE 63

Query: 61  CYFFCKPCYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNG--LSGTKKILTFQYHGPASK 118
            +FFC P YKY    R++R T AGYWK TG+   IK+R    L GTKK L F Y G A +
Sbjct: 64  WFFFCPPDYKYPTGRRSNRATEAGYWKPTGKDRNIKSRATKELLGTKKTLVF-YRGRAPQ 122

Query: 119 KAKIGWVMHEY 129
             +  WVMHEY
Sbjct: 123 SVRTNWVMHEY 133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567421|ref|NP_567986.3| NAC transcription factor-like 9 [Arabidopsis thaliana] gi|332661133|gb|AEE86533.1| NAC transcription factor-like 9 [Arabidopsis thaliana]

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 55/132 (41%), Positives = 78/132 (59%), Gaps = 4/132 (3%)

Query: 1   MESL-MGFRFQPSNEQIFCLLEKKRLNP-HFSHHTIKDIDDICGLEPWDLAGASKTESED 58
           MESL +GFRF+P++E++     + ++N  H     I DID +C  EPWDL   S  +++D
Sbjct: 6   MESLPLGFRFRPTDEELVNHYLRLKINGRHSDVRVIPDID-VCKWEPWDLPALSVIKTDD 64

Query: 59  RVCYFFCKPCYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASK 118
              +FFC    KY    R++R T++GYWK TG+   IK++  L G KK L F Y G A K
Sbjct: 65  PEWFFFCPRDRKYPNGHRSNRATDSGYWKATGKDRSIKSKKTLIGMKKTLVF-YRGRAPK 123

Query: 119 KAKIGWVMHEYH 130
             +  W+MHEY 
Sbjct: 124 GERTNWIMHEYR 135

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061527|ref|XP_002300524.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222847782|gb|EEE85329.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  102 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 54/140 (38%), Positives = 79/140 (56%), Gaps = 7/140 (5%)

Query: 1   MESL-MGFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDR 59
           M+SL +GFRF+P++E++     + ++N   S   +    D+C  EPWDL G S  +++D 
Sbjct: 5   MDSLPLGFRFRPTDEELISHYLRLKINGRDSEVEVIPEIDVCKWEPWDLPGQSVIKTDDP 64

Query: 60  VCYFFCKPCYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNG-----LSGTKKILTFQYHG 114
             +FFC    KY    R++R T+AGYWK TG+   IK+R       L G KK L F Y G
Sbjct: 65  EWFFFCPRDRKYPNGHRSNRATDAGYWKATGKDRTIKSRKSAGNTTLIGMKKTLVF-YRG 123

Query: 115 PASKKAKIGWVMHEYHVNDD 134
            A K  +  W+MHEY   ++
Sbjct: 124 RAPKGKRTNWIMHEYRPTEE 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186516558|ref|NP_001119122.1| NAC transcription factor-like 9 [Arabidopsis thaliana] gi|3367576|emb|CAA20028.1| NAM / CUC2 -like protein [Arabidopsis thaliana] gi|7270509|emb|CAB80274.1| NAM / CUC2-like protein [Arabidopsis thaliana] gi|332661134|gb|AEE86534.1| NAC transcription factor-like 9 [Arabidopsis thaliana]

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 78/131 (59%), Gaps = 4/131 (3%)

Query: 1   MESL-MGFRFQPSNEQIFCLLEKKRLNP-HFSHHTIKDIDDICGLEPWDLAGASKTESED 58
           MESL +GFRF+P++E++     + ++N  H     I DID +C  EPWDL   S  +++D
Sbjct: 6   MESLPLGFRFRPTDEELVNHYLRLKINGRHSDVRVIPDID-VCKWEPWDLPALSVIKTDD 64

Query: 59  RVCYFFCKPCYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASK 118
              +FFC    KY    R++R T++GYWK TG+   IK++  L G KK L F Y G A K
Sbjct: 65  PEWFFFCPRDRKYPNGHRSNRATDSGYWKATGKDRSIKSKKTLIGMKKTLVF-YRGRAPK 123

Query: 119 KAKIGWVMHEY 129
             +  W+MHEY
Sbjct: 124 GERTNWIMHEY 134

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187196|ref|NP_001190927.1| NAC transcription factor-like 9 [Arabidopsis thaliana] gi|332661135|gb|AEE86535.1| NAC transcription factor-like 9 [Arabidopsis thaliana]

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 78/131 (59%), Gaps = 4/131 (3%)

Query: 1   MESL-MGFRFQPSNEQIFCLLEKKRLNP-HFSHHTIKDIDDICGLEPWDLAGASKTESED 58
           MESL +GFRF+P++E++     + ++N  H     I DID +C  EPWDL   S  +++D
Sbjct: 6   MESLPLGFRFRPTDEELVNHYLRLKINGRHSDVRVIPDID-VCKWEPWDLPALSVIKTDD 64

Query: 59  RVCYFFCKPCYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASK 118
              +FFC    KY    R++R T++GYWK TG+   IK++  L G KK L F Y G A K
Sbjct: 65  PEWFFFCPRDRKYPNGHRSNRATDSGYWKATGKDRSIKSKKTLIGMKKTLVF-YRGRAPK 123

Query: 119 KAKIGWVMHEY 129
             +  W+MHEY
Sbjct: 124 GERTNWIMHEY 134

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399031|gb|ADL36810.1| NAC domain class transcription factor [Malus x domestica]

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 56/138 (40%), Positives = 78/138 (56%), Gaps = 10/138 (7%)

Query: 1   MESL-MGFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDR 59
           MESL +GFRF+P++E++     + ++N   S   +    D+C  EPWDL   S  +S+D+
Sbjct: 6   MESLPLGFRFRPTDEELINHYLRLKINGRDSEVRVIPEIDVCRWEPWDLPKLSVIKSDDQ 65

Query: 60  VCYFFCKPCYKYKKSTRAHRRTNAGYWKVTGRGSKIKTR--------NGLSGTKKILTFQ 111
             +FFC    KY    R++R T+AGYWK TG+   IK+R        NG  G KK L F 
Sbjct: 66  EWFFFCPRDRKYPNGHRSNRATDAGYWKATGKDRTIKSRQCKSASNSNGQVGMKKTLVF- 124

Query: 112 YHGPASKKAKIGWVMHEY 129
           Y G A K  +  W+MHEY
Sbjct: 125 YRGRAPKGERTSWIMHEY 142

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063973|ref|XP_002301328.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222843054|gb|EEE80601.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/130 (40%), Positives = 75/130 (57%), Gaps = 6/130 (4%)

Query: 5   MGFRFQPSNEQIFCLLEKKRLNPHFSH--HTIKDIDDICGLEPWDLAGASKTESEDRVCY 62
           +G+ F P++E++     K ++   + H   TI +++ +C  EPW+L G S  +S D  CY
Sbjct: 13  VGYGFHPTDEELVNHFLKLKMIGGYDHVVSTIAEVN-VCNYEPWELPGLSAIQSNDPECY 71

Query: 63  FFCKPCYKYKKSTRAHRRTNAGYWKVTGRGSKI--KTRNGLSGTKKILTFQYHGPASKKA 120
           FF +P YKY KS RA+R T AGYWK TGR   I  K+      TKK L F Y+G      
Sbjct: 72  FFSRPNYKYSKSQRANRTTGAGYWKGTGRDRTITAKSTGEQIATKKTLVF-YNGRVPNGV 130

Query: 121 KIGWVMHEYH 130
           +  W+MHEY+
Sbjct: 131 RTNWIMHEYN 140

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
TAIR|locus:2128013	534	NTL9 "NAC transcription factor	0.913	0.237	0.381	1.5e-17
TAIR|locus:2037920	652	NAC014 "NAC 014" [Arabidopsis	0.942	0.200	0.348	8e-17
TAIR|locus:2167155	476	NAC086 "NAC domain containing	0.906	0.264	0.341	1.8e-16
TAIR|locus:2097720	479	NAC045 "NAC domain containing	0.906	0.263	0.341	1.9e-16
TAIR|locus:2114678	469	NAC062 "NAC domain containing	0.949	0.281	0.335	4.8e-16
TAIR|locus:2172334	335	ANAC087 "Arabidopsis NAC domai	0.920	0.382	0.373	5.3e-16
TAIR|locus:2009729	631	NAC028 "NAC domain containing	0.906	0.199	0.348	7e-16
TAIR|locus:2083656	310	CUC1 "CUP-SHAPED COTYLEDON1" [	0.949	0.425	0.382	7.2e-16
TAIR|locus:2202028	395	NAC007 "NAC 007" [Arabidopsis	0.913	0.321	0.374	8.1e-16
TAIR|locus:2153899	451	TIP "TCV-interacting protein"	0.913	0.281	0.351	1.2e-15

TAIR|locus:2128013 NTL9 "NAC transcription factor-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 1.5e-17, P = 1.5e-17
 Identities = 50/131 (38%), Positives = 72/131 (54%)

Query:     1 MESL-MGFRFQPSNEQIFCLLEKKRLNP-HFSHHTIKDIDDICGLEPWDLAGASKTESED 58
             MESL +GFRF+P++E++     + ++N  H     I DID +C  EPWDL   S  +++D
Sbjct:     6 MESLPLGFRFRPTDEELVNHYLRLKINGRHSDVRVIPDID-VCKWEPWDLPALSVIKTDD 64

Query:    59 RVXXXXXXXXXXXXXSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASK 118
                              R++R T++GYWK TG+   IK++  L G KK L F Y G A K
Sbjct:    65 PEWFFFCPRDRKYPNGHRSNRATDSGYWKATGKDRSIKSKKTLIGMKKTLVF-YRGRAPK 123

Query:   119 KAKIGWVMHEY 129
               +  W+MHEY
Sbjct:   124 GERTNWIMHEY 134

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0031347 "regulation of defense response" evidence=IMP

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

TAIR|locus:2037920 NAC014 "NAC 014" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 8.0e-17, P = 8.0e-17
 Identities = 47/135 (34%), Positives = 73/135 (54%)

Query:     1 MESL-MGFRFQPSNEQIFCLLEKKRLNPH-FSHHTIKDIDDICGLEPWDLAGASKTESED 58
             ME+L +GFRF+P++E++     + ++N        I +ID +C  EPWDL G S  +++D
Sbjct:    21 MEALPLGFRFRPTDEELINHYLRLKINGRDLEVRVIPEID-VCKWEPWDLPGLSVIKTDD 79

Query:    59 RVXXXXXXXXXXXXXSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASK 118
             +                R++R T+ GYWK TG+   IK++  + G KK L F Y G A +
Sbjct:    80 QEWFFFCPRDRKYPSGHRSNRATDIGYWKATGKDRTIKSKKMIIGMKKTLVF-YRGRAPR 138

Query:   119 KAKIGWVMHEYHVND 133
               +  W+MHEY   D
Sbjct:   139 GERTNWIMHEYRATD 153

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2167155 NAC086 "NAC domain containing protein 86" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 44/129 (34%), Positives = 67/129 (51%)

Query:     6 GFRFQPSNEQIFCLLEKKRLN-PHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVXXXX 64
             GFRF P++E++     K+++N        I ++D +   EPWDL G S   S+D+     
Sbjct:     9 GFRFHPTDEELITYYLKRKINGQEIELEIIPEVD-LYKCEPWDLPGKSLIPSKDQEWFFF 67

Query:    65 XXXXXXXXXSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIGW 124
                       +R +R T  GYWK TG+  ++  R+   GTKK L + Y G A    + GW
Sbjct:    68 SPRDRKYPNGSRTNRATKGGYWKATGKDRRVSWRDRAIGTKKTLVY-YRGRAPHGIRTGW 126

Query:   125 VMHEYHVND 133
             VMHEY +++
Sbjct:   127 VMHEYRLDE 135

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2097720 NAC045 "NAC domain containing protein 45" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 1.9e-16, P = 1.9e-16
 Identities = 44/129 (34%), Positives = 67/129 (51%)

Query:     6 GFRFQPSNEQIFCLLEKKRLNP-HFSHHTIKDIDDICGLEPWDLAGASKTESEDRVXXXX 64
             GFRF P++E++     K+++N        I ++D +   EPWDL G S   S+D+     
Sbjct:     9 GFRFHPTDEELITYYLKRKINGLEIELEVIAEVD-LYKCEPWDLPGKSLLPSKDQEWYFF 67

Query:    65 XXXXXXXXXSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIGW 124
                       +R +R T  GYWK TG+  ++  R+   GTKK L + Y G A    + GW
Sbjct:    68 SPRDRKYPNGSRTNRATKGGYWKATGKDRRVSWRDRAIGTKKTLVY-YRGRAPHGIRTGW 126

Query:   125 VMHEYHVND 133
             VMHEY +++
Sbjct:   127 VMHEYRLDE 135

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2114678 NAC062 "NAC domain containing protein 62" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 4.8e-16, P = 4.8e-16
 Identities = 46/137 (33%), Positives = 75/137 (54%)

Query:     1 MESL-MGFRFQPSNEQIFCLLEKKRLNPHFSH-HTIKDIDDICGLEPWDLAGASKTESED 58
             M+SL +G RF+P++E++     ++++N H      I++ID IC  EPWDL   S  +++D
Sbjct:    10 MDSLPVGLRFRPTDEELIRYYLRRKINGHDDDVKAIREID-ICKWEPWDLPDFSVIKTKD 68

Query:    59 RVXXXXXXXXXXXXXSTRAHRRTNAGYWKVTGRGSKIKT-RNGLSGTKKILTFQYHGPAS 117
                             +R +R T AGYWK TG+  KIK+ +  + G K+ L F + G A 
Sbjct:    69 SEWLYFCPLDRKYPSGSRQNRATVAGYWKATGKDRKIKSGKTNIIGVKRTLVF-HAGRAP 127

Query:   118 KKAKIGWVMHEYHVNDD 134
             +  +  W++HEY   +D
Sbjct:   128 RGTRTNWIIHEYRATED 144

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0070417 "cellular response to cold" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2172334 ANAC087 "Arabidopsis NAC domain containing protein 87" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 5.3e-16, P = 5.3e-16
 Identities = 50/134 (37%), Positives = 68/134 (50%)

Query:     6 GFRFQPSNEQIF-CLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVXXXX 64
             GFRF P++E+I  C L++K LN  F+   + + D +   EPWDL   +K   ++      
Sbjct:    24 GFRFHPTDEEIITCYLKEKVLNSRFTAVAMGEAD-LNKCEPWDLPKRAKMGEKE--FYFF 80

Query:    65 XXXXXXXXXSTRAHRRTNAGYWKVTGRGSKI-KTRNGLSGTKKILTFQYHGPASKKAKIG 123
                        R +R T +GYWK TG+  +I K +  L G KK L F Y G A K  K  
Sbjct:    81 CQRDRKYPTGMRTNRATESGYWKATGKDKEIFKGKGCLVGMKKTLVF-YRGRAPKGEKTN 139

Query:   124 WVMHEYHVNDDPSY 137
             WVMHEY +    SY
Sbjct:   140 WVMHEYRLEGKYSY 153

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2009729 NAC028 "NAC domain containing protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 7.0e-16, P = 7.0e-16
 Identities = 45/129 (34%), Positives = 67/129 (51%)

Query:     6 GFRFQPSNEQIFCLLEKKRLNPH-FSHHTIKDIDDICGLEPWDLAGASKTESEDRVXXXX 64
             GFRF P++E++     K+++N        I +ID +   EPWDL G S   S+D      
Sbjct:     9 GFRFHPTDEELVIYYLKRKINGRTIELEIIPEID-LYKCEPWDLPGKSLLPSKDLEWFFF 67

Query:    65 XXXXXXXXXSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIGW 124
                       +R +R T AGYWK TG+  K+ + + + GTKK L + Y G A   ++  W
Sbjct:    68 SPRDRKYPNGSRTNRATKAGYWKATGKDRKVTSHSRMVGTKKTLVY-YRGRAPHGSRTDW 126

Query:   125 VMHEYHVND 133
             VMHEY + +
Sbjct:   127 VMHEYRLEE 135

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2083656 CUC1 "CUP-SHAPED COTYLEDON1" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 7.2e-16, P = 7.2e-16
 Identities = 54/141 (38%), Positives = 72/141 (51%)

Query:     2 ESLM--GFRFQPSNEQIFCL-LEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESED 58
             ESLM  GFRF P++E++    L KK L+ +FS   I  +D +   EPW+L    K +  +
Sbjct:    17 ESLMPPGFRFHPTDEELITYYLLKKVLDSNFSCAAISQVD-LNKSEPWELP--EKAKMGE 73

Query:    59 RVXXXXXXXXXXXXXSTRAHRRTNAGYWKVTGRGSKIKTRN--GLSGTKKILTFQYHGPA 116
             +                R +R T AGYWK TG+  +IK+     L G KK L F Y G A
Sbjct:    74 KEWYFFTLRDRKYPTGLRTNRATEAGYWKATGKDREIKSSKTKSLLGMKKTLVF-YKGRA 132

Query:   117 SKKAKIGWVMHEYHVNDDPSY 137
              K  K  WVMHEY ++   SY
Sbjct:   133 PKGEKSCWVMHEYRLDGKFSY 153

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0048467 "gynoecium development" evidence=IGI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0010072 "primary shoot apical meristem specification" evidence=TAS

GO:0048527 "lateral root development" evidence=TAS

GO:0051782 "negative regulation of cell division" evidence=IMP

GO:0010223 "secondary shoot formation" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0009790 "embryo development" evidence=IGI

GO:0009908 "flower development" evidence=IGI;IMP

GO:0010014 "meristem initiation" evidence=IGI;IMP

GO:0010160 "formation of organ boundary" evidence=IGI

TAIR|locus:2202028 NAC007 "NAC 007" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 8.1e-16, P = 8.1e-16
 Identities = 49/131 (37%), Positives = 64/131 (48%)

Query:     6 GFRFQPSNEQIF-CLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVXXXX 64
             GFRF P++E++    L KK  +       IKDID +  +EPWDL    K   E++     
Sbjct:    10 GFRFHPTDEELVDYYLRKKVASKRIEIDFIKDID-LYKIEPWDLQELCKIGHEEQSDWYF 68

Query:    65 XXXXXXXX-XSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIG 123
                        TR +R T AG+WK TGR   I  R+ L G +K L F Y G A    K  
Sbjct:    69 FSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHSLIGMRKTLVF-YKGRAPNGQKSD 127

Query:   124 WVMHEYHVNDD 134
             W+MHEY +  D
Sbjct:   128 WIMHEYRLETD 138

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2153899 TIP "TCV-interacting protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 1.2e-15, P = 1.2e-15
 Identities = 46/131 (35%), Positives = 69/131 (52%)

Query:     5 MGFRFQPSNEQIFCLLEKKRLNPHFSH-HTIKDIDDICGLEPWDLAGASKTESEDRVXXX 63
             +GFRF P++E++     + ++N H +    I++ID IC  EPWDL   S  ++ D     
Sbjct:    15 VGFRFSPTDEELVRYYLRLKINGHDNDVRVIREID-ICKWEPWDLPDFSVVKTTDSEWLF 73

Query:    64 XXXXXXXXXXSTRAHRRTNAGYWKVTGRGSKIKT-RNGLSGTKKILTFQYHGPASKKAKI 122
                        +R +R T AGYWK TG+  KIK+ +  + G K+ L F Y G A K  + 
Sbjct:    74 FCPLDRKYPSGSRMNRATVAGYWKATGKDRKIKSGKTKIIGVKRTLVF-YTGRAPKGTRT 132

Query:   123 GWVMHEYHVND 133
              W+MHEY   +
Sbjct:   133 CWIMHEYRATE 143

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0051607 "defense response to virus" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	139
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	2e-34

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  116 bits (292), Expect = 2e-34
 Identities = 51/128 (39%), Positives = 68/128 (53%), Gaps = 6/128 (4%)

Query: 6   GFRFQPSNEQ-IFCLLEKK-RLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVCYF 63
           GFRF P++E+ +   L++K    P      I ++D I   EPWDL    K +  DR  YF
Sbjct: 4   GFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVD-IYKFEPWDLPD-GKAKGGDREWYF 61

Query: 64  FCKPCYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNG-LSGTKKILTFQYHGPASKKAKI 122
           F     KY   +R +R T +GYWK TG+   + ++ G + G KK L F Y G A K  K 
Sbjct: 62  FSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSKGGEVVGMKKTLVF-YKGRAPKGEKT 120

Query: 123 GWVMHEYH 130
            WVMHEY 
Sbjct: 121 DWVMHEYR 128

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=2.1e-49  Score=279.16  Aligned_cols=127  Identities=34%  Similarity=0.610  Sum_probs=96.6

Q ss_pred             CCCceeEcCChHHHHHHHHhHhcCCCCCCC-CeeeecCCCCCCCcCccccCccCCCCceEEEEeccccccCCCCcceeec
Q 043175            3 SLMGFRFQPSNEQIFCLLEKKRLNPHFSHH-TIKDIDDICGLEPWDLAGASKTESEDRVCYFFCKPCYKYKKSTRAHRRT   81 (139)
Q Consensus         3 lp~G~rF~PtDeELi~~yL~~k~~g~~~~~-~~I~~~Dvy~~~P~~L~~~~~~~~~~~~~yFF~~~~~~~~~~~r~~R~~   81 (139)
                      |||||||+|||+|||.+||++|+.|.+++. ++|+++|||++|||+|+...  .+++.+||||+++++++.+++|.+|++
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~--~~~~~~~yFF~~~~~~~~~~~r~~R~~   78 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKF--KGGDEEWYFFSPRKKKYPNGGRPNRVT   78 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHS--SS-SSEEEEEEE----------S-EEE
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhc--cCCCceEEEEEecccccCCcccccccc
Confidence            899999999999999999999999999887 89999999999999999432  336779999999999999999999999


Q ss_pred             ccceeEecCCCeEEec-CCceEeeeEEEEEEeeCCCCCCCCcCeEEEEEEeC
Q 043175           82 NAGYWKVTGRGSKIKT-RNGLSGTKKILTFQYHGPASKKAKIGWVMHEYHVN  132 (139)
Q Consensus        82 ~~G~W~~~g~~~~i~~-~~~~~G~k~~l~f~~~~~~~~~~kt~W~M~EY~l~  132 (139)
                      ++|+||++|+.++|.+ ++.++|+|++|+| |.++.+++.+|+|+||||+|.
T Consensus        79 ~~G~Wk~~g~~~~i~~~~g~~iG~k~~l~f-~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   79 GGGYWKSTGKEKPIKDPGGKVIGFKKTLVF-YSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             TTEEEEEECEEEEEEE-TTCEEEEEEEEEE-EESSTTS-EEEEEEEEEEEE-
T ss_pred             cceEEeecccccccccccceeeeeEEEEEE-EeccCCCCCcCCeEEEEEEeC
Confidence            9999999999999998 7799999999999 888778889999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	139
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		2e-10
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		2e-10
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		1e-08

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 6   GFRFQPSNEQIFC-LLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVXXXX 64
           GFRF P++E++    L +K     FS   I +ID +   +PW L   +K    ++     
Sbjct: 23  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEID-LYKFDPWVLP--NKALFGEKEWYFF 79
Query: 65  XXXXXXXXXSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIGW 124
                     +R +R   +GYWK TG    I T     G KK L F Y G A K  K  W
Sbjct: 80  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVF-YIGKAPKGTKTNW 138
Query: 125 VMHEYHV 131
           +MHEY +
Sbjct: 139 IMHEYRL 145

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 6   GFRFQPSNEQIFC-LLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVXXXX 64
           GFRF P++E++    L +K     FS   I +ID +   +PW L   +K    ++     
Sbjct: 20  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEID-LYKFDPWVLP--NKALFGEKEWYFF 76
Query: 65  XXXXXXXXXSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIGW 124
                     +R +R   +GYWK TG    I T     G KK L F Y G A K  K  W
Sbjct: 77  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVF-YIGKAPKGTKTNW 135
Query: 125 VMHEYHV 131
           +MHEY +
Sbjct: 136 IMHEYRL 142

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
Query: 6   GFRFQPSNEQIFC-LLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVXXXX 64
           GFRF P+++++    L +K          I ++D +   +PWDL    +     R     
Sbjct: 18  GFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVD-LYKFDPWDLP--ERALFGAREWYFF 74
Query: 65  XXXXXXXXXSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIGW 124
                     +R +R    GYWK TG    +  R    G KK L F Y G A +  K  W
Sbjct: 75  TPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVF-YAGKAPRGVKTDW 133
Query: 125 VMHEYHV 131
           +MHEY +
Sbjct: 134 IMHEYRL 140

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
1ut7_A	171	No apical meristem protein; transcription regulati	1e-36
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	3e-36

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  122 bits (308), Expect = 1e-36
 Identities = 46/134 (34%), Positives = 63/134 (47%), Gaps = 5/134 (3%)

Query: 6   GFRFQPSNEQ-IFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVCYFF 64
           GFRF P++E+ +   L +K     FS   I +ID +   +PW L   +     ++  YFF
Sbjct: 20  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEID-LYKFDPWVLPNKAL--FGEKEWYFF 76

Query: 65  CKPCYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIGW 124
                KY   +R +R   +GYWK TG    I T     G KK L F Y G A K  K  W
Sbjct: 77  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVF-YIGKAPKGTKTNW 135

Query: 125 VMHEYHVNDDPSYK 138
           +MHEY + +     
Sbjct: 136 IMHEYRLIEPSRRN 149

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  121 bits (306), Expect = 3e-36
 Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 5/132 (3%)

Query: 6   GFRFQPSNEQ-IFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVCYFF 64
           GFRF P++++ +   L +K          I ++D +   +PWDL   +   + +   YFF
Sbjct: 18  GFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVD-LYKFDPWDLPERALFGAREW--YFF 74

Query: 65  CKPCYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIGW 124
                KY   +R +R    GYWK TG    +  R    G KK L F Y G A +  K  W
Sbjct: 75  TPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVF-YAGKAPRGVKTDW 133

Query: 125 VMHEYHVNDDPS 136
           +MHEY + D   
Sbjct: 134 IMHEYRLADAGR 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=2.3e-55  Score=321.98  Aligned_cols=133  Identities=31%  Similarity=0.573  Sum_probs=120.6

Q ss_pred             CCCCCceeEcCChHHHHHHHHhHhcCCCCCCCCeeeecCCCCCCCcCccccCccCCCCceEEEEeccccccCCCCcceee
Q 043175            1 MESLMGFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVCYFFCKPCYKYKKSTRAHRR   80 (139)
Q Consensus         1 ~~lp~G~rF~PtDeELi~~yL~~k~~g~~~~~~~I~~~Dvy~~~P~~L~~~~~~~~~~~~~yFF~~~~~~~~~~~r~~R~   80 (139)
                      +.|||||||+|||||||.+||++|+.|.+++.++|.++|||.+|||+||+.+.  .++.+|||||++.+|+++|.|++|+
T Consensus        13 ~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~--~g~~ewYFFs~r~~ky~~g~R~nR~   90 (174)
T 3ulx_A           13 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERAL--FGAREWYFFTPRDRKYPNGSRPNRA   90 (174)
T ss_dssp             TTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCS--SCSSEEEEEEECCC-----CCSCEE
T ss_pred             cCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhc--cCCceEEEEeccccccCCCCCceee
Confidence            47999999999999999999999999999999999999999999999998864  3578999999999999999999999


Q ss_pred             cccceeEecCCCeEEecCCceEeeeEEEEEEeeCCCCCCCCcCeEEEEEEeCCCCC
Q 043175           81 TNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIGWVMHEYHVNDDPS  136 (139)
Q Consensus        81 ~~~G~W~~~g~~~~i~~~~~~~G~k~~l~f~~~~~~~~~~kt~W~M~EY~l~~~~~  136 (139)
                      +++|+||++|++++|.+++.+||+|++|+| |.++++++.+|+|+||||+|.++..
T Consensus        91 t~~G~WkatG~dk~I~~~g~~vG~KktLvF-y~g~~p~g~kT~WvMhEY~L~~~~~  145 (174)
T 3ulx_A           91 AGNGYWKATGADKPVAPRGRTLGIKKALVF-YAGKAPRGVKTDWIMHEYRLADAGR  145 (174)
T ss_dssp             ETTEEEEECSCCEEECCSSSCCEEEEEEEE-EESSTTSCEEEEEEEEEEEECSCC-
T ss_pred             cCCceEccCCCCcEEeeCCcEEEEEEEEEE-ecCCCCCCCcCCeEEEEEEeCCCCC
Confidence            999999999999999988899999999999 9999999999999999999998753

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=8e-55  Score=318.67  Aligned_cols=132  Identities=30%  Similarity=0.544  Sum_probs=118.7

Q ss_pred             CCCCCceeEcCChHHHHHHHHhHhcCCCCCCCCeeeecCCCCCCCcCccccCccCCCCceEEEEeccccccCCCCcceee
Q 043175            1 MESLMGFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVCYFFCKPCYKYKKSTRAHRR   80 (139)
Q Consensus         1 ~~lp~G~rF~PtDeELi~~yL~~k~~g~~~~~~~I~~~Dvy~~~P~~L~~~~~~~~~~~~~yFF~~~~~~~~~~~r~~R~   80 (139)
                      +.|||||||+|||||||.+||++|+.|.+++.++|+++|||.+|||+||+...  .++.+||||+++.+++++|.|++|+
T Consensus        15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~--~g~~ewyFFs~r~~k~~~g~R~~R~   92 (171)
T 1ut7_A           15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKAL--FGEKEWYFFSPRDRKYPNGSRPNRV   92 (171)
T ss_dssp             SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSS--SCSSEEEEEEECCC-------CCEE
T ss_pred             cCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhh--cCCccEEEEeccccccCCCCccccc
Confidence            47999999999999999999999999999999999999999999999998863  4688999999999999999999999


Q ss_pred             cccceeEecCCCeEEecCCceEeeeEEEEEEeeCCCCCCCCcCeEEEEEEeCCCC
Q 043175           81 TNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIGWVMHEYHVNDDP  135 (139)
Q Consensus        81 ~~~G~W~~~g~~~~i~~~~~~~G~k~~l~f~~~~~~~~~~kt~W~M~EY~l~~~~  135 (139)
                      +++|+||++|++++|.+++.+||+|++|+| |.++++++.+|+|+||||+|.+++
T Consensus        93 t~~G~Wk~tG~~k~I~~~~~~vG~KktLvF-y~g~~p~g~kT~WvMhEY~l~~~~  146 (171)
T 1ut7_A           93 AGSGYWKATGTDKIISTEGQRVGIKKALVF-YIGKAPKGTKTNWIMHEYRLIEPS  146 (171)
T ss_dssp             ETTEEEEEEEEEEEEEETTEEEEEEEEEEE-EESSTTSCEEEEEEEEEEEECCCC
T ss_pred             CCCCEEeccCCCceEEecCcEEEEEEEEEE-EcCcCCCCCcCCeEEEEEEcCCCc
Confidence            999999999999999998899999999999 999999999999999999999874

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	139
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	1e-27

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 98.5 bits (245), Expect = 1e-27
 Identities = 46/132 (34%), Positives = 63/132 (47%), Gaps = 5/132 (3%)

Query: 6   GFRFQPSNEQIFC-LLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVCYFF 64
           GFRF P++E++    L +K     FS   I +I D+   +PW L   +    ++   YFF
Sbjct: 20  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKALFGEKE--WYFF 76

Query: 65  CKPCYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIGW 124
                KY   +R +R   +GYWK TG    I T     G KK L F Y G A K  K  W
Sbjct: 77  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVF-YIGKAPKGTKTNW 135

Query: 125 VMHEYHVNDDPS 136
           +MHEY + +   
Sbjct: 136 IMHEYRLIEPSR 147

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1e-53  Score=310.21  Aligned_cols=133  Identities=30%  Similarity=0.540  Sum_probs=118.5

Q ss_pred             CCCCCceeEcCChHHHHHHHHhHhcCCCCCCCCeeeecCCCCCCCcCccccCccCCCCceEEEEeccccccCCCCcceee
Q 043175            1 MESLMGFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICGLEPWDLAGASKTESEDRVCYFFCKPCYKYKKSTRAHRR   80 (139)
Q Consensus         1 ~~lp~G~rF~PtDeELi~~yL~~k~~g~~~~~~~I~~~Dvy~~~P~~L~~~~~~~~~~~~~yFF~~~~~~~~~~~r~~R~   80 (139)
                      |+|||||||+|||||||.+||++|+.|.+++.++|+++|||++|||+||+...  .++++||||+++++++++++|.+|+
T Consensus        15 l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~--~~~~~wyFft~~~~k~~~g~r~~R~   92 (166)
T d1ut7a_          15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKAL--FGEKEWYFFSPRDRKYPNGSRPNRV   92 (166)
T ss_dssp             SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSS--SCSSEEEEEEECCC-------CCEE
T ss_pred             ccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhc--cCcceEEEEeeeccccCCCCccccc
Confidence            68999999999999999999999999999999999999999999999998753  4688999999999999999999999


Q ss_pred             cccceeEecCCCeEEecCCceEeeeEEEEEEeeCCCCCCCCcCeEEEEEEeCCCCC
Q 043175           81 TNAGYWKVTGRGSKIKTRNGLSGTKKILTFQYHGPASKKAKIGWVMHEYHVNDDPS  136 (139)
Q Consensus        81 ~~~G~W~~~g~~~~i~~~~~~~G~k~~l~f~~~~~~~~~~kt~W~M~EY~l~~~~~  136 (139)
                      +++|+||++|+.++|.++|.+||+|++|+| |+++.+++.+|+|+||||+|.+++.
T Consensus        93 ~g~G~Wk~~g~~~~i~~~g~~vG~kk~l~f-y~~~~~~~~~t~W~M~EY~l~~~~~  147 (166)
T d1ut7a_          93 AGSGYWKATGTDKIISTEGQRVGIKKALVF-YIGKAPKGTKTNWIMHEYRLIEPSR  147 (166)
T ss_dssp             ETTEEEEEEEEEEEEEETTEEEEEEEEEEE-EESSTTSCEEEEEEEEEEEECCCC-
T ss_pred             cCCCEecccCCCceEecCCcEEEEEEEEEE-EecCCCCCCccCeEEEEEecCCccc
Confidence            999999999999999999999999999999 9999999999999999999988654