Citrus Sinensis ID: 043239

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
Protein Sequence
KKPNRDDAYRRGAPGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWIMLCCLHMLLW
Secondary Structure (PSIPRED)
cccccccEEEcccccccHHHHHccccccccccccccccHHHHHHHccccEEEEEcccccccHHHHHcccccEEEEEEcccccHHcHHHHHHcccEEEcccccccHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccccccccccccEEEEEcccHHHHHHHHHHcccccEEEEEcccccccccccccccHHHHHHHccEEEEEccccHHHHccccHHHHHHccccEEEEEccccccccHHHHHHHHHccccccccccccccccccccccccccccEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEcccHHHHHHHHHHHHcccEEccccccHHHHHHHHHcccEEEEEccccccHHHHHHccccEEEEEcccccccccHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccEEEEEEccHHHHHHHHHHHHcccEEEEEcccccHHHHHHccccHHHHHHHccEEEEEccccHHHcccccHHHHHHHcccEEEEEccccccccHHHHHHHHHcccEEEEEEEccccccccccccccccEEEcccEccc
Coil and Loop (DISEMBL)
kkpnrddayrrgapgcfnpplserftlldpllhsadsthsFLSRHASSVRAIlclgpspltsdtlsllpaleivvgstagidhvdlqecrrrgilvtnagnafsedgaDYVVGLLVDVLRRVSSIDrfvrnglwpdhgayplgstlggkrvgivGLGSIGSEVAKRLvpfgcsiaytsrkkkpgvsypfyanvsglaadsDVLIVCCALTEETHHMINKDVMTAlgkegviinvgrgalideKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWIMLCCLHMLLW
Flexible Loop (DISEMBL)
kkpnrddayrrgapgcfnpplSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTnagnafsedgaDYVVGLLVDVLRRVSSIDRfvrnglwpdhgAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAytsrkkkpgvsYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWIMLCCLHMLLW
Low Complexity Region (SEG)
KKPNRDDAYRRGAPGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILClgpspltsdtlsllpalEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYvvgllvdvlrrvSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWIMLCCLHMLLW
Disordered region (IsUnstruct)
********************LSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWIMLCCLHMLL*
Disordered Region (DISOPRED)
***NRDDAYRRGAPGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWIMLCCLHMLLW
Disordered Region (DISEMBL)
*********RRGAPGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWIMLCCLHMLLW
Disordered Region (DISPRO)
***NRDDAYRRGAPGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWIMLCCLHMLLW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KKPNRDDAYRRGAPGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWIMLCCLHMLLW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	286	2.2.26 [Sep-21-2011]
Q9LE33	323	Glyoxylate/hydroxypyruvat	yes	no	0.811	0.718	0.560	1e-69
Q9CA90	313	Glyoxylate/hydroxypyruvat	no	no	0.807	0.738	0.427	8e-47
Q5JEZ2	333	Glyoxylate reductase OS=P	yes	no	0.737	0.633	0.328	4e-30
A1RYE4	339	Glyoxylate reductase OS=T	yes	no	0.737	0.622	0.317	1e-28
B6YWH0	334	Glyoxylate reductase OS=T	no	no	0.751	0.643	0.309	3e-28
Q8U3Y2	336	Glyoxylate reductase OS=P	no	no	0.737	0.627	0.319	1e-27
B1L765	332	Glyoxylate reductase OS=K	yes	no	0.797	0.686	0.320	3e-26
Q9YAW4	335	Glyoxylate reductase OS=A	yes	no	0.744	0.635	0.346	6e-26
Q9C4M5	331	Glyoxylate reductase OS=T	N/A	no	0.804	0.694	0.327	1e-25
Q9UBQ7	328	Glyoxylate reductase/hydr	yes	no	0.744	0.649	0.328	3e-24

>sp|Q9LE33|HPR3_ARATH Glyoxylate/hydroxypyruvate reductase HPR3 OS=Arabidopsis thaliana GN=HPR3 PE=2 SV=1

 Score =  263 bits (672), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 130/232 (56%), Positives = 172/232 (74%)

Query: 21  LSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAG 80
           L+  F  L     S++S  SF  RHASS RA +  G  P+T + LS LP+L+I+V ++ G
Sbjct: 25  LTREFRTLITDTSSSESLPSFFPRHASSARAFVISGRLPVTDELLSHLPSLQILVCTSVG 84

Query: 81  IDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAY 140
           IDH+DL  C+RRGI++TNAGNAFS+D AD  VGLL+ VLRR+ + DR+VR+G W   G +
Sbjct: 85  IDHIDLAACKRRGIVITNAGNAFSDDVADCAVGLLISVLRRIPAADRYVRSGNWAKFGDF 144

Query: 141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADS 200
            LGS + GKRVGIVGLGSIGS VAKRL  FGC I+Y SR +K    Y +Y+++  LA ++
Sbjct: 145 QLGSKVSGKRVGIVGLGSIGSFVAKRLESFGCVISYNSRSQKQSSPYRYYSDILSLAENN 204

Query: 201 DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
           DVL++CC+LT+ETHH++N++VM  LGK+GV+INVGRG LIDEKE+V  LV G
Sbjct: 205 DVLVLCCSLTDETHHIVNREVMELLGKDGVVINVGRGKLIDEKEMVKCLVDG 256

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate. Mostly active in the presence of NADPH and glyoxylate.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8EC: 1

>sp|Q9CA90|HPR2_ARATH Glyoxylate/hydroxypyruvate reductase A HPR2 OS=Arabidopsis thaliana GN=HPR2 PE=1 SV=1

 Score =  187 bits (475), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 100/234 (42%), Positives = 146/234 (62%), Gaps = 3/234 (1%)

Query: 21  LSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAG 80
           L +RF LL     ++      L  H +S+RA++    +   +  +S LP LEIV   + G
Sbjct: 20  LEKRFNLLR--FWTSPEKSVLLETHRNSIRAVVGNASAGADAQLISDLPNLEIVSSFSVG 77

Query: 81  IDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAY 140
           +D +DL +C+ +GI VTN  +  +ED AD  +GL++ +LRR+   DR+VR+G W   G +
Sbjct: 78  LDKIDLGKCKEKGIRVTNTPDVLTEDVADLAIGLILALLRRLCECDRYVRSGKW-KQGEF 136

Query: 141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADS 200
            L +   GK VGI+GLG IG+ +AKR   F C I Y SR  KP V+Y +Y  V  LA +S
Sbjct: 137 QLTTKFSGKSVGIIGLGRIGTAIAKRAEAFSCPINYYSRTIKPDVAYKYYPTVVDLAQNS 196

Query: 201 DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
           D+L+V C LTE+T H++++ VM ALG +GV+IN+GRG  +DE+EL+  L  G L
Sbjct: 197 DILVVACPLTEQTRHIVDRQVMDALGAKGVLINIGRGPHVDEQELIKALTEGRL 250

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate in the cytoplasm, thus providing a cytosolic bypass to the photorespiratory core cycle. Mostly active in the presence of NADPH and hydroxypyruvate.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=gyaR PE=3 SV=1

 Score =  132 bits (331), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 114/219 (52%), Gaps = 8/219 (3%)

Query: 42  LSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGN 101
           L +    V A++ +    + S+     P L IV     G D++D++E  RRGI VTN  +
Sbjct: 39  LLKKVRDVDALVTMLSERIDSEVFDAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPD 98

Query: 102 AFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHG-----AYPLGSTLGGKRVGIVGL 156
             ++  AD+   LL+   RR+   D F R+G W   G      + LG  + GK +GIVG 
Sbjct: 99  VLTDATADFAWTLLLATARRLIEADHFTRSGEWKRRGIAWHPRWFLGYDVYGKTIGIVGF 158

Query: 157 GSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEET 213
           G IG  VA+R   FG  I Y SR +KP         + ++  L  +SD +++   LT+ET
Sbjct: 159 GRIGQAVARRARGFGMRILYYSRSRKPEAEKELGAEFRSLEDLLRESDFVVLAVPLTKET 218

Query: 214 HHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
            +MIN++ +  + K  +++N+ RG ++D K L+  L  G
Sbjct: 219 QYMINEERLRLMKKTAILVNIARGKVVDTKALMKALKEG 257

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1

 Score =  127 bits (319), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 116/217 (53%), Gaps = 6/217 (2%)

Query: 42  LSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGN 101
           L R+     A+LCL    + ++ +   P L+++   + G DH+D+ E  +RGI VT+   
Sbjct: 41  LLRNIRDKDALLCLLTDKIDAEVMDAAPNLKVISTYSVGFDHIDIPEATKRGIYVTHTPG 100

Query: 102 AFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLW--PDHGAYPLGSTLGGKRVGIVGLGSI 159
             ++  A++ VGL++ V RR+   D+ +R G W  P +  +  G  L GK +G+VGLG I
Sbjct: 101 VLTDAVAEFTVGLILAVTRRIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRI 160

Query: 160 GSEVAKRLVPFGCSIAYTSRKKKPGVSYPF----YANVSGLAADSDVLIVCCALTEETHH 215
           G   AKRL  F   I Y   +++  V        + ++  L   SD++ +   LT+ET+H
Sbjct: 161 GVATAKRLSSFDVKILYYDIERRWDVETVIPNMEFTDLDTLLEKSDIVSIHVPLTKETYH 220

Query: 216 MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
           +IN++ +  + K   +IN  RG ++D + LV  L  G
Sbjct: 221 LINEERLRKMKKTAYLINTARGPVVDTEALVKALKEG 257

Thermofilum pendens (strain Hrk 5) (taxid: 368408)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B6YWH0|GYAR_THEON Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1

 Score =  125 bits (314), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 115/223 (51%), Gaps = 8/223 (3%)

Query: 38  THSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVT 97
           +   L      V A++ +    + ++     P L+IV     G D++D++E  + G+ +T
Sbjct: 35  SREVLLEKVRDVDALVTMLSERIDAEVFDAAPRLKIVANYAVGYDNIDIEEATKMGVYIT 94

Query: 98  NAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGA--YP---LGSTLGGKRVG 152
           N  +  +   AD    LL+   RR+   D+FVR+G W   G   +P   LG  + G+ +G
Sbjct: 95  NTPDVLTNATADMAWVLLLATARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIG 154

Query: 153 IVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYAN---VSGLAADSDVLIVCCAL 209
           IVG G IG  +A+R   FG  I Y SR +KP V     A    +  L  +SD +++   L
Sbjct: 155 IVGFGRIGQAIARRAKGFGMRILYNSRTRKPEVEKELGAEFMPLDELLKESDFVVLVVPL 214

Query: 210 TEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
           T+ET+HMIN++ +  +    +++N+ RG ++D + LV  L  G
Sbjct: 215 TKETYHMINEERLKLMKPTAILVNIARGKVVDTEALVKALREG 257

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=gyaR PE=3 SV=1

 Score =  123 bits (309), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 108/219 (49%), Gaps = 8/219 (3%)

Query: 42  LSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGN 101
           L      V A++ +    +  +     P L IV     G D++D++E  RRGI VTN  +
Sbjct: 39  LLEKVKDVDALVTMLSERIDQEVFENAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPD 98

Query: 102 AFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPD-----HGAYPLGSTLGGKRVGIVGL 156
             +   AD+   LL+   R V   D+FVR+G W       H  + LG  L GK +GIVG 
Sbjct: 99  VLTNATADHAFALLLATARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTIGIVGF 158

Query: 157 GSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEET 213
           G IG  +A+R   F   I Y SR +K          Y  +  +  +SD +I+   LT+ET
Sbjct: 159 GRIGQAIARRAKGFNMRILYYSRTRKSQAEKELGAEYRPLEEVLKESDFVILAVPLTKET 218

Query: 214 HHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
            +MIN++ +  +    +++N+ RG ++D K L+  L  G
Sbjct: 219 MYMINEERLKLMKPTAILVNIARGKVVDTKALIKALKEG 257

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B1L765|GYAR_KORCO Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1

 Score =  119 bits (297), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 118/240 (49%), Gaps = 12/240 (5%)

Query: 21  LSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAG 80
           + E F L D     A  +   +        A++ L   P+ ++     P L IV     G
Sbjct: 19  IEEHFEL-DLWKDEAPPSKKVIIERVKDCDALVSLLTDPIDAEVFEAAPKLRIVAQYAVG 77

Query: 81  IDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPD--HG 138
            D++D++E  +RGI VTN     +E  AD+   LL+   RRV   DR+VR G W    H 
Sbjct: 78  YDNIDVKEATKRGIYVTNTPGVLTETTADFAFALLMAAARRVVEADRYVREGKWKVAWHP 137

Query: 139 AYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSR------KKKPGVSYPFYAN 192
              LG  + G+ +GIVG+G IG+ VA+R   FG  I Y         +K+ GV    Y  
Sbjct: 138 MMMLGYDVYGRTLGIVGMGRIGAAVARRAKGFGMRILYYDSIRREDFEKELGVE---YVP 194

Query: 193 VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
           +  L  +SD + +   LTEET+HMI ++ +  + +  +++N  RG ++D+K L   L  G
Sbjct: 195 LEKLLEESDFVSLHVPLTEETYHMIGEEQLRRMKRTAILVNTSRGKVVDQKALYKALKEG 254

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9YAW4|GYAR_AERPE Glyoxylate reductase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=gyaR PE=3 SV=2

 Score =  118 bits (295), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 111/222 (50%), Gaps = 9/222 (4%)

Query: 39  HSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTN 98
            + LS+ A    A+  L    +  D LS  P L IV     G D++D++   R GI VTN
Sbjct: 38  ETLLSK-AREADALYTLLTDRIDCDLLSQAPRLRIVAQMAVGFDNIDVECATRLGIYVTN 96

Query: 99  AGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPD-----HGAYPLGSTLGGKRVGI 153
                +E  A++   L++   RRV   D FVR G W       H    LG  L GK +GI
Sbjct: 97  TPGVLTEATAEFTWALILAAARRVVEADHFVRWGEWWRLRTGWHPMMMLGVELRGKTLGI 156

Query: 154 VGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALT 210
           +G+G IGS VA+    FG  I Y SR +K  +       Y ++  L  +SD+L +   LT
Sbjct: 157 LGMGRIGSRVAEIGKAFGMRIIYHSRSRKREIEKELGAEYRSLEDLLRESDILSIHLPLT 216

Query: 211 EETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
           +ET H+I +  +  + K  +++N GRGA++D   LV  L  G
Sbjct: 217 DETRHLIGESELKLMKKTAILVNTGRGAIVDTGALVKALREG 258

Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 116/238 (48%), Gaps = 8/238 (3%)

Query: 23  ERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGID 82
           E+F  ++            L      V A++ L    +  + L   P L+I+     G D
Sbjct: 20  EKFYEIELWKDPKAPPRGVLLEKVREVDALVTLVTDKVDKELLENAPKLKIIAQYAVGYD 79

Query: 83  HVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWP--DHGAY 140
           ++D++E  +RGI VTN     ++  AD    LL+ V RR+   D FVR+G W   + G +
Sbjct: 80  NIDIEEATKRGIYVTNTPGVLTDATADLAFALLLAVARRIVEADAFVRSGEWKKSEVGWH 139

Query: 141 P---LGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF---YANVS 194
           P   LG  L GK +GIVG G IG  +AKR   FG  I Y SR +KP         Y +  
Sbjct: 140 PLMFLGYGLKGKTLGIVGFGRIGQALAKRAKGFGMKIIYYSRTRKPEAEEEIGAEYVDFE 199

Query: 195 GLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
            L  +SD + +   LT+ET+HMI +  +  +    ++IN  RGA++D   L+  L  G
Sbjct: 200 TLLKESDFISLHVPLTKETYHMIGEKELKLMKPNAILINTSRGAVVDTNALIKALKEG 257

Thermococcus litoralis (taxid: 2265)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9UBQ7|GRHPR_HUMAN Glyoxylate reductase/hydroxypyruvate reductase OS=Homo sapiens GN=GRHPR PE=1 SV=1

 Score =  112 bits (280), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 109/219 (49%), Gaps = 6/219 (2%)

Query: 42  LSRHASSVRAILCLGPSPLTSDTLSLLPA-LEIVVGSTAGIDHVDLQECRRRGILVTNAG 100
           L R  +    +LCL    +    L    A L+++   + GIDH+ L E ++RGI V    
Sbjct: 45  LERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTP 104

Query: 101 NAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPL-GSTLGGKRVGIVGLGSI 159
           +  ++  A+  V LL+   RR+      V+NG W       L G  L    VGI+GLG I
Sbjct: 105 DVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRI 164

Query: 160 GSEVAKRLVPFGCS-IAYTSRKKKPGVSYPFYA---NVSGLAADSDVLIVCCALTEETHH 215
           G  +A+RL PFG     YT R+ +P  +  F A   +   LAA SD ++V C+LT  T  
Sbjct: 165 GQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEG 224

Query: 216 MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
           + NKD    + +  V IN+ RG ++++ +L   L  G +
Sbjct: 225 LCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKI 263

Enzyme with hydroxy-pyruvate reductase, glyoxylate reductase and D-glycerate dehydrogenase enzymatic activities. Reduces hydroxypyruvate to D-glycerate, glyoxylate to glycolate oxidizes D-glycerate to hydroxypyruvate.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
224058629	344	predicted protein [Populus trichocarpa]	0.828	0.688	0.644	6e-86
225426718	314	PREDICTED: glyoxylate reductase [Vitis v	0.797	0.726	0.668	7e-86
255537211	322	glycerate dehydrogenase, putative [Ricin	0.821	0.729	0.636	4e-84
224071666	332	predicted protein [Populus trichocarpa]	0.828	0.713	0.623	2e-79
317106633	333	JHL05D22.10 [Jatropha curcas]	0.814	0.699	0.615	3e-77
225426720	334	PREDICTED: glyoxylate reductase-like [Vi	0.835	0.715	0.593	5e-76
317106635	331	JHL05D22.12 [Jatropha curcas]	0.755	0.652	0.611	2e-74
359489392	341	PREDICTED: glyoxylate reductase isoform	0.828	0.695	0.609	1e-72
296089114	989	unnamed protein product [Vitis vinifera]	0.828	0.239	0.609	3e-72
224127466	331	predicted protein [Populus trichocarpa]	0.811	0.700	0.596	5e-72

>gi|224058629|ref|XP_002299574.1| predicted protein [Populus trichocarpa] gi|222846832|gb|EEE84379.1| predicted protein [Populus trichocarpa]

 Score =  323 bits (827), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 156/242 (64%), Positives = 194/242 (80%), Gaps = 5/242 (2%)

Query: 17  FNPPLSE----RFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALE 72
           FN P+++     F LLDP   S +   SFLS HA SVRA++C+G +P+T++TL+LLP+LE
Sbjct: 39  FNLPVNDILRPHFHLLDPA-DSPEPASSFLSNHAQSVRALICVGYAPVTAETLNLLPSLE 97

Query: 73  IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNG 132
           ++V S+AG+DH+D+QECRRRGI++TNA  AF+ED ADY V LL+DV RR+S+ DRF+  G
Sbjct: 98  LIVASSAGVDHIDIQECRRRGIIMTNASTAFAEDAADYAVALLIDVWRRISAADRFLHAG 157

Query: 133 LWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYAN 192
           LWP  G YPL S L GKRVGIVGLGSIG EV+KRL  FGCSIAY SR +KP V +P+YAN
Sbjct: 158 LWPVKGDYPLASKLRGKRVGIVGLGSIGFEVSKRLEAFGCSIAYNSRMEKPSVPFPYYAN 217

Query: 193 VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
           V  LAA SD L++CC+LTE+T H+INKDVMTALGK+GVIINVGRG LIDEKELV FL+RG
Sbjct: 218 VLDLAAHSDALVLCCSLTEQTRHIINKDVMTALGKKGVIINVGRGGLIDEKELVQFLLRG 277

Query: 253 SL 254
            +
Sbjct: 278 DI 279

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426718|ref|XP_002281980.1| PREDICTED: glyoxylate reductase [Vitis vinifera]

 Score =  323 bits (827), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 159/238 (66%), Positives = 194/238 (81%), Gaps = 10/238 (4%)

Query: 17  FNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVG 76
           F   L  RF L+D    S+DST    S HAS    +LC+GP+P++SDTL  LP+L+ +VG
Sbjct: 22  FKGRLQSRFQLID----SSDST---FSPHAS---VLLCVGPAPVSSDTLRHLPSLQCIVG 71

Query: 77  STAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPD 136
           S+AG+DH+DL+ECRRRGI VTNAG++F EDGAD+ +GLL+DVLRR+S+ DR+VR GLWP 
Sbjct: 72  SSAGVDHIDLEECRRRGITVTNAGSSFCEDGADFAIGLLIDVLRRISAADRYVRAGLWPM 131

Query: 137 HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGL 196
            G YPLGS LGGKRVGIVGLG IGSE+AKRLV FGC IAY SR KK  VS+P+YAN+  L
Sbjct: 132 KGDYPLGSKLGGKRVGIVGLGKIGSEIAKRLVAFGCRIAYNSRNKKSSVSFPYYANICNL 191

Query: 197 AADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
           AA+SD+LI+CCALT+ETHH+I+KDVMTALGKEGVIINVGRG LI+EKELV  LV+G +
Sbjct: 192 AANSDILIICCALTKETHHLIDKDVMTALGKEGVIINVGRGGLINEKELVQCLVQGQI 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537211|ref|XP_002509672.1| glycerate dehydrogenase, putative [Ricinus communis] gi|223549571|gb|EEF51059.1| glycerate dehydrogenase, putative [Ricinus communis]

 Score =  317 bits (811), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 156/245 (63%), Positives = 195/245 (79%), Gaps = 10/245 (4%)

Query: 14  PGCFNPPLSER----FTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLP 69
           P  F  PL +R    F LLDP+L + +  +S      +SVRA++C+G +P+TS+TLS+LP
Sbjct: 19  PPSFTLPLKDRLSAHFQLLDPVL-AQEPANSL-----NSVRALVCVGYAPITSETLSVLP 72

Query: 70  ALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFV 129
           +LE++V S+AG+DH+DL+ECR RGI +TNA  AF+ED AD  V LL+DVLRR+S+ DRFV
Sbjct: 73  SLELIVASSAGLDHIDLKECRGRGITITNASVAFAEDVADQAVALLIDVLRRISAADRFV 132

Query: 130 RNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF 189
           R+GLWP  G YPLG  LGGKRVGIVG GSIGSEVAKRL  FGC IAY SR+KKP V +P+
Sbjct: 133 RSGLWPMKGDYPLGFKLGGKRVGIVGFGSIGSEVAKRLEAFGCRIAYNSRRKKPSVPFPY 192

Query: 190 YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFL 249
           YANV  LAA+SD+LI+CC+LTEETHH+IN +VM  LG+EGVIINVGRG+LIDEKELV FL
Sbjct: 193 YANVLDLAAESDILILCCSLTEETHHLINGNVMKTLGREGVIINVGRGSLIDEKELVQFL 252

Query: 250 VRGSL 254
           V+G +
Sbjct: 253 VQGKI 257

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071666|ref|XP_002303552.1| predicted protein [Populus trichocarpa] gi|222840984|gb|EEE78531.1| predicted protein [Populus trichocarpa]

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 151/242 (62%), Positives = 187/242 (77%), Gaps = 5/242 (2%)

Query: 17  FNPPLSE----RFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALE 72
           FN PL +     F LLDP   S +   SFLS HA SVRA++C+  +PL+++TL+LLP+LE
Sbjct: 27  FNSPLKDILQPHFHLLDPA-DSPEPASSFLSCHAKSVRALICIYNTPLSAETLNLLPSLE 85

Query: 73  IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNG 132
           ++V ++AG+DH+DL+ECR RGI++TNA  AF+ED AD+ V LL+DV RR+S+ DRFVR G
Sbjct: 86  LIVAASAGVDHIDLEECRCRGIIMTNASTAFAEDAADHAVALLIDVCRRISTADRFVRAG 145

Query: 133 LWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYAN 192
           LWP      LG  +G KRVGIVGLG IG EV KRL  FGCSIAY SRKKKP V + ++AN
Sbjct: 146 LWPVKRDCSLGFKMGRKRVGIVGLGRIGFEVGKRLEAFGCSIAYNSRKKKPSVPFSYHAN 205

Query: 193 VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
           V  LA DSD LI+CC+LTE+THH+INKDV+ ALGKEGVIINVGRGALIDEK LV FL+RG
Sbjct: 206 VLDLAEDSDALILCCSLTEQTHHIINKDVLEALGKEGVIINVGRGALIDEKVLVQFLLRG 265

Query: 253 SL 254
            +
Sbjct: 266 DI 267

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106633|dbj|BAJ53139.1| JHL05D22.10 [Jatropha curcas]

 Score =  294 bits (752), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 144/234 (61%), Positives = 180/234 (76%), Gaps = 1/234 (0%)

Query: 21  LSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAG 80
           LS R+ LL     S    H  L++HA+S++AILC G SP+T D L  LP++ +VV ++AG
Sbjct: 36  LSNRYQLLKAW-ESPLPLHQLLTKHANSIQAILCSGDSPVTDDLLQRLPSVRLVVTASAG 94

Query: 81  IDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAY 140
           I+H+DL  CRRRGI VTNAG  FS+ GAD  VGL  DVLR++S+ DR+VR GLW   G Y
Sbjct: 95  INHIDLIACRRRGISVTNAGIVFSDGGADAAVGLYFDVLRKISAADRYVRQGLWVKKGDY 154

Query: 141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADS 200
           PL S +GGKRVGIVGLGSIGSEVAKRL  FGC I+Y SRKKK    YPFY++V  LAA+S
Sbjct: 155 PLASKIGGKRVGIVGLGSIGSEVAKRLEAFGCIISYNSRKKKNFAPYPFYSSVCELAANS 214

Query: 201 DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
           D LI+CCALT++T HMINK+V++ALGKEGVI+N+GRGA++DEKELV FL+ G +
Sbjct: 215 DALIICCALTDQTQHMINKEVLSALGKEGVIVNIGRGAIVDEKELVRFLMEGKI 268

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426720|ref|XP_002282078.1| PREDICTED: glyoxylate reductase-like [Vitis vinifera]

 Score =  290 bits (742), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 146/246 (59%), Positives = 184/246 (74%), Gaps = 7/246 (2%)

Query: 9   YRRGAPGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLL 68
           +  G+P  F  P  +R      L+H ++   S      S V+ +LC+  +P+TS TL  L
Sbjct: 34  FVHGSP-PFGLPFKDRLLSRFQLIHMSELPES------SHVKVMLCMDHTPVTSQTLYKL 86

Query: 69  PALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRF 128
           P+LE +V S+AG+DH+DL  CR RGI V N   AFSED ADY V LL+DVLR++S+ DR+
Sbjct: 87  PSLECIVASSAGVDHIDLTTCRLRGIAVANGSQAFSEDVADYAVALLMDVLRKISAGDRY 146

Query: 129 VRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYP 188
           +R+GLW   G YPLG  LGGKRVGIVGLG+IGSEVAKRLV FGC+IAY SRKK+  VS+P
Sbjct: 147 LRSGLWSTKGDYPLGWKLGGKRVGIVGLGNIGSEVAKRLVAFGCAIAYNSRKKRSSVSFP 206

Query: 189 FYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHF 248
           +YA+V  LAA+SD+L++C ALT ETHH+INKDVMTALGKEGVIINVGRG+LI++KELV F
Sbjct: 207 YYADVCDLAANSDILVICGALTSETHHIINKDVMTALGKEGVIINVGRGSLINQKELVQF 266

Query: 249 LVRGSL 254
           LV G +
Sbjct: 267 LVEGQI 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106635|dbj|BAJ53141.1| JHL05D22.12 [Jatropha curcas]

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 132/216 (61%), Positives = 169/216 (78%)

Query: 39  HSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTN 98
           H FL+ HA SV+A+L  G + + +D L LLPA+ +VV ++AG++ +D+ ECRRRGI + N
Sbjct: 51  HQFLAAHAQSVQAVLASGGASINADILQLLPAVRVVVTTSAGLNQIDIPECRRRGIAIAN 110

Query: 99  AGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGS 158
           AG+ +S D AD  VGLL+DVLR++S+ DR+VR GLW   G YPLG+ L GKR GIVGLG 
Sbjct: 111 AGDVYSADVADLAVGLLIDVLRKISASDRYVRQGLWATKGDYPLGAKLSGKRAGIVGLGR 170

Query: 159 IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMIN 218
           IG EVAKRL  FGC I+Y SRKKKP VSYPFY NVS LAA+ D LI+CC LT++T HMIN
Sbjct: 171 IGYEVAKRLEAFGCYISYNSRKKKPNVSYPFYQNVSELAANCDALIICCGLTKQTFHMIN 230

Query: 219 KDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
           K+V++ALGK+GVI+N+GRGA+IDEKE+V  LV G +
Sbjct: 231 KEVLSALGKKGVIVNIGRGAIIDEKEMVRCLVAGEI 266

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489392|ref|XP_003633919.1| PREDICTED: glyoxylate reductase isoform 1 [Vitis vinifera]

 Score =  279 bits (713), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 145/238 (60%), Positives = 178/238 (74%), Gaps = 1/238 (0%)

Query: 17  FNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVG 76
           F    S +F LL     S   T  FL+ HA SV+A++    SP+TSD L  LP+L++VV 
Sbjct: 40  FQYKFSPKFQLLKAW-ESPLPTTLFLTTHAHSVKAVVSSSSSPITSDILRHLPSLQLVVA 98

Query: 77  STAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPD 136
           +T G++ +DL ECRRRGI + NAG   SED AD  VGL +DVL+++S+ DRFVR+GLWP 
Sbjct: 99  TTVGLNQIDLPECRRRGISIANAGKILSEDCADMGVGLFIDVLKKISAGDRFVRSGLWPI 158

Query: 137 HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGL 196
              +PLGS LGGKRVGIVGLGSIG EVAKRL  FGC I Y SR+KK  +SYPFY+NV  L
Sbjct: 159 QKDFPLGSKLGGKRVGIVGLGSIGLEVAKRLEAFGCIILYNSRRKKANISYPFYSNVCEL 218

Query: 197 AADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
           AA+S+ LI+CCALT+ET HMINK+VM ALGKEGVIIN+GRGA+IDEKELV  LV+G +
Sbjct: 219 AANSNALIICCALTDETRHMINKEVMKALGKEGVIINIGRGAIIDEKELVQCLVQGEI 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089114|emb|CBI38817.3| unnamed protein product [Vitis vinifera]

 Score =  277 bits (709), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 145/238 (60%), Positives = 178/238 (74%), Gaps = 1/238 (0%)

Query: 17  FNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVG 76
           F    S +F LL     S   T  FL+ HA SV+A++    SP+TSD L  LP+L++VV 
Sbjct: 688 FQYKFSPKFQLLKAW-ESPLPTTLFLTTHAHSVKAVVSSSSSPITSDILRHLPSLQLVVA 746

Query: 77  STAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPD 136
           +T G++ +DL ECRRRGI + NAG   SED AD  VGL +DVL+++S+ DRFVR+GLWP 
Sbjct: 747 TTVGLNQIDLPECRRRGISIANAGKILSEDCADMGVGLFIDVLKKISAGDRFVRSGLWPI 806

Query: 137 HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGL 196
              +PLGS LGGKRVGIVGLGSIG EVAKRL  FGC I Y SR+KK  +SYPFY+NV  L
Sbjct: 807 QKDFPLGSKLGGKRVGIVGLGSIGLEVAKRLEAFGCIILYNSRRKKANISYPFYSNVCEL 866

Query: 197 AADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
           AA+S+ LI+CCALT+ET HMINK+VM ALGKEGVIIN+GRGA+IDEKELV  LV+G +
Sbjct: 867 AANSNALIICCALTDETRHMINKEVMKALGKEGVIINIGRGAIIDEKELVQCLVQGEI 924

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127466|ref|XP_002320081.1| predicted protein [Populus trichocarpa] gi|222860854|gb|EEE98396.1| predicted protein [Populus trichocarpa]

 Score =  276 bits (707), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 139/233 (59%), Positives = 180/233 (77%), Gaps = 1/233 (0%)

Query: 22  SERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGI 81
           S +FT L     S+   H FLS H+ S++AIL    +P+T+D L LLP + +VV ++ G+
Sbjct: 36  SNKFTFLKAY-ESSLPLHQFLSTHSPSIKAILSSVGTPITADILQLLPEVGVVVTTSVGL 94

Query: 82  DHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYP 141
           + VDL ECRRRGI V NAG+ FS+D AD+ VGLL+DVLR+VS+ D +VR GLW   G YP
Sbjct: 95  NQVDLPECRRRGIKVANAGSVFSDDVADFAVGLLIDVLRKVSASDGYVRKGLWATKGDYP 154

Query: 142 LGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSD 201
           LGS LGGKR+GIVGLG+IG  VAKRL  FGCSI+Y SRK+KP VSYPFY +V  LAA+ D
Sbjct: 155 LGSKLGGKRIGIVGLGNIGFAVAKRLEAFGCSISYNSRKRKPHVSYPFYESVCELAANCD 214

Query: 202 VLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
           VL++CC LT++T HMINK+V++ALGKEGVI+N+GRGA+I+EKE+V  LV+G +
Sbjct: 215 VLVICCELTDQTRHMINKEVLSALGKEGVIVNIGRGAIINEKEMVQCLVQGEI 267

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
TAIR|locus:2034665	323	HPR3 "hydroxypyruvate reductas	0.811	0.718	0.491	3.7e-55
TAIR|locus:2043684	338	AT2G45630 [Arabidopsis thalian	0.748	0.633	0.506	3.5e-52
TAIR|locus:2017824	313	AT1G79870 [Arabidopsis thalian	0.807	0.738	0.388	1.2e-40
UNIPROTKB|Q483F8	311	CPS_2082 "Putative glyoxylate	0.636	0.585	0.329	9.7e-25
TIGR_CMR|CPS_2082	311	CPS_2082 "putative glyoxylate	0.636	0.585	0.329	9.7e-25
TIGR_CMR|SPO_2422	313	SPO_2422 "D-isomer specific 2-	0.650	0.594	0.326	2.6e-22
FB|FBgn0037370	362	CG1236 [Drosophila melanogaste	0.601	0.475	0.322	9e-22
UNIPROTKB|F1NX57	345	GRHPR "Uncharacterized protein	0.639	0.530	0.324	1.9e-21
UNIPROTKB|F1MB84	328	GRHPR "Uncharacterized protein	0.639	0.557	0.324	3e-21
UNIPROTKB|F1PJS0	328	GRHPR "Uncharacterized protein	0.744	0.649	0.301	1e-20

TAIR|locus:2034665 HPR3 "hydroxypyruvate reductase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 114/232 (49%), Positives = 151/232 (65%)

Query:    21 LSERFTLLDPLLHSADSTHSFLSRHASSVRAILCXXXXXXXXXXXXXXXXXEIVVGSTAG 80
             L+  F  L     S++S  SF  RHASS RA +                  +I+V ++ G
Sbjct:    25 LTREFRTLITDTSSSESLPSFFPRHASSARAFVISGRLPVTDELLSHLPSLQILVCTSVG 84

Query:    81 IDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGAY 140
             IDH+DL  C+RRGI++TNAGNAFS+D AD              + DR+VR+G W   G +
Sbjct:    85 IDHIDLAACKRRGIVITNAGNAFSDDVADCAVGLLISVLRRIPAADRYVRSGNWAKFGDF 144

Query:   141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADS 200
              LGS + GKRVGIVGLGSIGS VAKRL  FGC I+Y SR +K    Y +Y+++  LA ++
Sbjct:   145 QLGSKVSGKRVGIVGLGSIGSFVAKRLESFGCVISYNSRSQKQSSPYRYYSDILSLAENN 204

Query:   201 DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
             DVL++CC+LT+ETHH++N++VM  LGK+GV+INVGRG LIDEKE+V  LV G
Sbjct:   205 DVLVLCCSLTDETHHIVNREVMELLGKDGVVINVGRGKLIDEKEMVKCLVDG 256

GO:0005737 "cytoplasm" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0009853 "photorespiration" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

TAIR|locus:2043684 AT2G45630 [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 109/215 (50%), Positives = 142/215 (66%)

Query:    41 FLSRHASSVRAILCXXXXXXXXXXXXXXXXXEIVVGSTAGIDHVDLQECRRRGILVTNAG 100
             FL+ H+ S+ AI+                   +VV ++AG+DHVDL ECRRRGI V NAG
Sbjct:    61 FLAYHSDSISAIIAPVAAPVTADLIRILPNLRLVVTTSAGVDHVDLVECRRRGISVANAG 120

Query:   101 NAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIG 160
             ++FSED AD             S+ +RFV+   WP  G YPLGS LG KR+GIVGLGSIG
Sbjct:   121 SSFSEDVADTAVGLLIDVFRRISAANRFVKQRFWPLKGDYPLGSKLGRKRIGIVGLGSIG 180

Query:   161 SEVAKRLVPFGCSIAYTSRKKKP-GVSYPFYANVSGLAADSDVLIVCCALTEETHHMINK 219
             S+VA RL  FGC I+Y+SR +KP  V Y +Y ++  +AA+SD LI+CC L E+T  +INK
Sbjct:   181 SKVATRLDAFGCQISYSSRNRKPYDVPYHYYMDIEEMAANSDALIICCELNEKTLRLINK 240

Query:   220 DVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
             DV++ALGK GVI+NV RGA+IDE+E+V  L  G +
Sbjct:   241 DVLSALGKRGVIVNVARGAIIDEEEMVRCLREGEI 275

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA;ISS

GO:0048037 "cofactor binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2017824 AT1G79870 [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 91/234 (38%), Positives = 129/234 (55%)

Query:    21 LSERFTLLDPLLHSADSTHSFLSRHASSVRAILCXXXXXXXXXXXXXXXXXEIVVGSTAG 80
             L +RF LL     ++      L  H +S+RA++                  EIV   + G
Sbjct:    20 LEKRFNLLR--FWTSPEKSVLLETHRNSIRAVVGNASAGADAQLISDLPNLEIVSSFSVG 77

Query:    81 IDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGAY 140
             +D +DL +C+ +GI VTN  +  +ED AD                DR+VR+G W   G +
Sbjct:    78 LDKIDLGKCKEKGIRVTNTPDVLTEDVADLAIGLILALLRRLCECDRYVRSGKWKQ-GEF 136

Query:   141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADS 200
              L +   GK VGI+GLG IG+ +AKR   F C I Y SR  KP V+Y +Y  V  LA +S
Sbjct:   137 QLTTKFSGKSVGIIGLGRIGTAIAKRAEAFSCPINYYSRTIKPDVAYKYYPTVVDLAQNS 196

Query:   201 DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
             D+L+V C LTE+T H++++ VM ALG +GV+IN+GRG  +DE+EL+  L  G L
Sbjct:   197 DILVVACPLTEQTRHIVDRQVMDALGAKGVLINIGRGPHVDEQELIKALTEGRL 250

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0009854 "oxidative photosynthetic carbon pathway" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q483F8 CPS_2082 "Putative glyoxylate reductase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 62/188 (32%), Positives = 98/188 (52%)

Query:    72 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRN 131
             +++     G D++DL     +GI VTN     +ED AD             ++ ++F+RN
Sbjct:    62 KLIANIGVGYDNIDLAAATAKGIAVTNTP-VVTEDTADLAFSLILAASRQLTANEKFLRN 120

Query:   132 GLWPDHGAYP-LGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK--PGVSYP 188
             G W        LG T+ G ++GI+G G IG  VA+R   F   I Y   ++K    VS  
Sbjct:   121 GQWSATNPIGCLGKTVHGAKLGIIGFGEIGQAVARRAKAFNMEIFYHGPRRKIDAEVSLE 180

Query:   189 --FYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELV 246
               ++ N++ + A SD++ + C L E THH+IN D +  +  + +++N GRG LIDE  LV
Sbjct:   181 AVYFENLTDMLAASDIISINCPLNENTHHLINADTIATMRPDAILVNTGRGPLIDESALV 240

Query:   247 HFLVRGSL 254
               + +G L
Sbjct:   241 GAMKKGHL 248

GO:0008152 "metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

TIGR_CMR|CPS_2082 CPS_2082 "putative glyoxylate reductase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 62/188 (32%), Positives = 98/188 (52%)

Query:    72 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRN 131
             +++     G D++DL     +GI VTN     +ED AD             ++ ++F+RN
Sbjct:    62 KLIANIGVGYDNIDLAAATAKGIAVTNTP-VVTEDTADLAFSLILAASRQLTANEKFLRN 120

Query:   132 GLWPDHGAYP-LGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK--PGVSYP 188
             G W        LG T+ G ++GI+G G IG  VA+R   F   I Y   ++K    VS  
Sbjct:   121 GQWSATNPIGCLGKTVHGAKLGIIGFGEIGQAVARRAKAFNMEIFYHGPRRKIDAEVSLE 180

Query:   189 --FYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELV 246
               ++ N++ + A SD++ + C L E THH+IN D +  +  + +++N GRG LIDE  LV
Sbjct:   181 AVYFENLTDMLAASDIISINCPLNENTHHLINADTIATMRPDAILVNTGRGPLIDESALV 240

Query:   247 HFLVRGSL 254
               + +G L
Sbjct:   241 GAMKKGHL 248

GO:0008152 "metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

TIGR_CMR|SPO_2422 SPO_2422 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 61/187 (32%), Positives = 89/187 (47%)

Query:    73 IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNG 132
             ++     G D +D+     RGI VTN     ++D AD                  +VR G
Sbjct:    68 VIANFGVGYDAIDVAAATARGITVTNTPGVLNDDVADLAVTMLLMQCRRMEQGGAWVREG 127

Query:   133 LWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYAN 192
              W +   +PL     G   G+VGLG IG E+A RL  F   I Y +R +K    + ++A+
Sbjct:   128 HW-ETANFPLNRKASGGVAGVVGLGRIGREIADRLAAFKMDIHYFARSEKDTPGWTYHAD 186

Query:   193 VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
                LA   D L+V      ET   I+++V+ ALG  GV++N+ RG+ IDE  L+  L RG
Sbjct:   187 PVSLAKAVDFLVVALVGGPETEKFISREVIEALGPRGVVVNISRGSTIDETALLDALERG 246

Query:   253 SLVELVL 259
              +    L
Sbjct:   247 RIAGAAL 253

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

FB|FBgn0037370 CG1236 [Drosophila melanogaster (taxid:7227)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 57/177 (32%), Positives = 89/177 (50%)

Query:    78 TAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDH 137
             + G DH+D++ECR+RGI V    +  ++  A+                ++ V NG W   
Sbjct:   116 SVGYDHIDVEECRKRGIRVGFTPDVLTDATAELTLALLLATNRRLFEANKQVYNGGWKSW 175

Query:   138 GA-YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFG-CSIAYTSRKKKPGVSYPFYA---N 192
                +  G  L G RVG++G G IG E+A R+VPF    I YT+R  +P  +    A   +
Sbjct:   176 APMWMCGQGLKGSRVGLLGFGRIGQEIAARIVPFKPTEITYTTRSLRPKEAAAVNARHVD 235

Query:   193 VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFL 249
                +  +SD+++VCCALT ET  + N      +    ++IN  RG ++D+K L   L
Sbjct:   236 FDEMLRESDLIVVCCALTPETKEIFNATAFQKMKPNCILINTARGGVVDQKALYEAL 292

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

UNIPROTKB|F1NX57 GRHPR "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 61/188 (32%), Positives = 95/188 (50%)

Query:    72 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRN 131
             +++   + G DH+ L E ++RGI V    +  ++  A+                   V+ 
Sbjct:    93 KVISTMSVGFDHLALDEIKKRGIRVGYTPDVLTDATAELSVALLLATCRRLPEAVSEVKT 152

Query:   132 GLWPD-HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVSYPF 189
             G W      +  G  L G  VGI+GLG IG  VA+RL PFG  +  YT  + +P  +  F
Sbjct:   153 GGWTTWKPLWMCGYGLSGSTVGIIGLGRIGQAVARRLKPFGVKNFLYTGSRPRPENAAEF 212

Query:   190 YAN---VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELV 246
              A    ++ LA +SD ++V CALT +T  M NKD  + + K  V IN  RGA++++++L 
Sbjct:   213 QAEFVPLTKLAQESDFVVVTCALTPDTQGMCNKDFFSRMKKTSVFINTSRGAVVNQEDLY 272

Query:   247 HFLVRGSL 254
               LV G +
Sbjct:   273 DALVGGQI 280

GO:0051287 "NAD binding" evidence=IEA

GO:0016618 "hydroxypyruvate reductase activity" evidence=IEA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0051259 "protein oligomerization" evidence=IEA

GO:0070402 "NADPH binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007588 "excretion" evidence=IEA

GO:0008465 "glycerate dehydrogenase activity" evidence=IEA

UNIPROTKB|F1MB84 GRHPR "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 61/188 (32%), Positives = 92/188 (48%)

Query:    72 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRN 131
             +++   + G+DH+ L E ++RGI V       ++  A+                   V+N
Sbjct:    76 KVISTMSVGVDHLALDEIKKRGIRVGYTPGVLTDATAELAVSLLLTTCRRLPEAIEEVKN 135

Query:   132 GLWPD-HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKKPGVSYPF 189
             G W      +  G  L    VGIVGLG IG  +A+RL PFG     YT R+ +P  +  F
Sbjct:   136 GGWTSWKPLWMCGHGLSQSTVGIVGLGRIGQAIARRLKPFGVRRFLYTGRQPRPQEAAEF 195

Query:   190 YAN-VSG--LAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELV 246
              A  VS   LAA+SD ++V C+LT  T  + NKD    + K  V +N+ RG ++D+ +L 
Sbjct:   196 QAEFVSTPKLAAESDFIVVACSLTPATRGLCNKDFFQWMKKTAVFVNISRGEVVDQDDLY 255

Query:   247 HFLVRGSL 254
               L  G +
Sbjct:   256 QALASGQI 263

GO:0070402 "NADPH binding" evidence=IEA

GO:0051259 "protein oligomerization" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IEA

GO:0016618 "hydroxypyruvate reductase activity" evidence=IEA

GO:0008465 "glycerate dehydrogenase activity" evidence=IEA

GO:0007588 "excretion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

UNIPROTKB|F1PJS0 GRHPR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 66/219 (30%), Positives = 99/219 (45%)

Query:    42 LSRHASSVRAILCXXXXXXXXXXXXXXXXXEIVVGS-TAGIDHVDLQECRRRGILVTNAG 100
             L R  +    +LC                   V+ + + G+DH+ L+E ++RGI V    
Sbjct:    45 LERGVAGAHGLLCLLSDHVDKRLLDAAGANLKVISTMSVGVDHLALEEIKKRGIRVGYTP 104

Query:   101 NAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPD-HGAYPLGSTLGGKRVGIVGLGSI 159
             +  ++  A+                   VRNG W      +  G  L    VGI+GLG I
Sbjct:   105 DVLTDATAELAMSLLLTTCRRLPEAIEEVRNGGWTSWKPLWMCGYGLTQSTVGIIGLGRI 164

Query:   160 GSEVAKRLVPFGCS-IAYTSRKKKPGVSYPFYAN-VSG--LAADSDVLIVCCALTEETHH 215
             G  +A+RL PFG     YT R+ +P  +  F A  VS   LAA+SD +IV C+LT  T  
Sbjct:   165 GQAIARRLKPFGIQRFLYTGRQPRPQEAAEFQAEFVSTPKLAAESDFIIVACSLTPATKG 224

Query:   216 MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
             + NKD    +    V IN+ RG ++++ +L   L  G +
Sbjct:   225 LCNKDFFQQMKTTAVFINISRGDVVNQDDLYEALASGQI 263

GO:0070402 "NADPH binding" evidence=IEA

GO:0051259 "protein oligomerization" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IEA

GO:0016618 "hydroxypyruvate reductase activity" evidence=IEA

GO:0008465 "glycerate dehydrogenase activity" evidence=IEA

GO:0007588 "excretion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LE33	HPR3_ARATH	1, ., 1, ., 1, ., 8, 1	0.5603	0.8111	0.7182	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00001059001	SubName- Full=Chromosome chr2 scaffold_112, whole genome shotgun sequence; (314 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00022240001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (401 aa)	•					•	•		0.531

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	286
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	1e-105
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	1e-68
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	8e-59
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	9e-59
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	9e-51
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	1e-50
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	4e-50
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	2e-47
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	1e-46
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	2e-44
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	2e-41
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	2e-40
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	1e-39
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	2e-39
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	5e-39
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	2e-38
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	2e-37
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	2e-37
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	7e-37
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	1e-36
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	6e-36
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	9e-36
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	2e-35
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	3e-35
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	5e-34
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	6e-33
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	3e-32
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	7e-32
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	1e-29
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	5e-29
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	1e-28
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	2e-28
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	5e-28
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	6e-28
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	2e-27
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	3e-27
PRK15409	323	PRK15409, PRK15409, bifunctional glyoxylate/hydrox	1e-26
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	4e-26
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	2e-25
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	3e-24
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	3e-24
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	3e-23
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	9e-23
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	4e-22
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	1e-21
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	3e-21
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	1e-19
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	6e-19
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	2e-17
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	3e-17
PRK12480	330	PRK12480, PRK12480, D-lactate dehydrogenase; Provi	1e-16
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	1e-15
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	5e-15
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	1e-14
PRK00257	381	PRK00257, PRK00257, erythronate-4-phosphate dehydr	2e-12
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	5e-11
cd12170	294	cd12170, 2-Hacid_dh_9, Putative D-isomer specific	5e-09
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	1e-08
PRK15469	312	PRK15469, ghrA, bifunctional glyoxylate/hydroxypyr	6e-08
PRK11790	409	PRK11790, PRK11790, D-3-phosphoglycerate dehydroge	1e-05
PRK15438	378	PRK15438, PRK15438, erythronate-4-phosphate dehydr	2e-05

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score =  307 bits (788), Expect = e-105
 Identities = 106/238 (44%), Positives = 148/238 (62%), Gaps = 3/238 (1%)

Query: 17  FNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVG 76
               L  RFT+   L  +AD   + L+ H   +RA++  G + L++  ++ LPALE++  
Sbjct: 13  LLAELEARFTVH-RLWEAADPA-ALLAEHGGRIRAVVTNGETGLSAALIAALPALELIAS 70

Query: 77  STAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPD 136
              G D +DL   R RGI VTN     ++D AD  VGLL+ VLRR+ + DRFVR G WP 
Sbjct: 71  FGVGYDGIDLDAARARGIRVTNTPGVLTDDVADLAVGLLLAVLRRIPAADRFVRAGRWP- 129

Query: 137 HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGL 196
            GA+PL   + GKRVGIVGLG IG  +A+RL  FG  IAY  R+ KP V Y +YA++  L
Sbjct: 130 KGAFPLTRKVSGKRVGIVGLGRIGRAIARRLEAFGMEIAYHGRRPKPDVPYRYYASLLEL 189

Query: 197 AADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
           AA+SDVL+V C     T H++N +V+ ALG +GV++NV RG+++DE  L+  L  G +
Sbjct: 190 AAESDVLVVACPGGPATRHLVNAEVLEALGPDGVLVNVARGSVVDEAALIAALQEGRI 247

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score =  215 bits (550), Expect = 1e-68
 Identities = 78/246 (31%), Positives = 123/246 (50%), Gaps = 7/246 (2%)

Query: 14  PGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEI 73
           P      L E+F +         +  + L+       A++      + ++ L  LP L++
Sbjct: 12  PPEVLERLKEKFEVE--RYEDDLTPDTELAERLKDADAVITFVNDRIDAEVLEKLPGLKL 69

Query: 74  VVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGL 133
           +   +AG D+VDL+  + RGI VTN     +E  A++ V L++ + RR+   DR VR G 
Sbjct: 70  IATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGN 129

Query: 134 WPDHGAY--PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF-- 189
           W   G     LG  L GK +GI+GLG IG  VA+RL  FG  + Y  R   P        
Sbjct: 130 WSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGA 189

Query: 190 -YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHF 248
            Y ++  L A+SD++ + C LT ET H+IN + +  +    +++N  RG L+DE+ L+  
Sbjct: 190 RYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDA 249

Query: 249 LVRGSL 254
           L  G +
Sbjct: 250 LKSGKI 255

Length = 324

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score =  189 bits (483), Expect = 8e-59
 Identities = 78/221 (35%), Positives = 112/221 (50%), Gaps = 8/221 (3%)

Query: 38  THSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVT 97
               L   A     +LC     + ++ L   P L+++   + G DH+D+   + RGI VT
Sbjct: 33  PREELLEAAKGADGLLCTLTDKIDAELLDAAPPLKVIANYSVGYDHIDVDAAKARGIPVT 92

Query: 98  NAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYP---LGSTLGGKRVGIV 154
           N  +  ++  AD    LL+   RRV   DRFVR G W   G  P   LG+ L GK +GIV
Sbjct: 93  NTPDVLTDATADLAFALLLAAARRVVEGDRFVRAGEWK--GWSPTLLLGTDLHGKTLGIV 150

Query: 155 GLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTE 211
           G+G IG  VA+R   FG  I Y +R +KP         Y ++  L A+SD + + C LT 
Sbjct: 151 GMGRIGQAVARRAKGFGMKILYHNRSRKPEAEEELGARYVSLDELLAESDFVSLHCPLTP 210

Query: 212 ETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
           ET H+IN + +  +    ++IN  RG ++DE  LV  L  G
Sbjct: 211 ETRHLINAERLALMKPTAILINTARGGVVDEDALVEALKSG 251

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score =  189 bits (482), Expect = 9e-59
 Identities = 79/227 (34%), Positives = 122/227 (53%), Gaps = 4/227 (1%)

Query: 31  LLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECR 90
           ++ + D     L    +   A++    +P+T++ L+  P L+ +  + AG+D++DL   +
Sbjct: 24  VIVADDLLADELEALLADADALIVSSTTPVTAEVLAKAPKLKFIQVAGAGVDNIDLDAAK 83

Query: 91  RRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKR 150
           +RGI VTN   A +E  A++ +GLL+ +LRR+   D  VR G      A   G  L GK 
Sbjct: 84  KRGITVTNVPGANAEAVAEHALGLLLALLRRLPRADAAVRRGWG-WLWAGFPGYELEGKT 142

Query: 151 VGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS---YPFYANVSGLAADSDVLIVCC 207
           VGIVGLG IG  VAKRL  FG  + Y  R +KP           ++  L A SDV+++  
Sbjct: 143 VGIVGLGRIGQRVAKRLQAFGMKVLYYDRTRKPEPEEDLGFRVVSLDELLAQSDVVVLHL 202

Query: 208 ALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
            LT ET H+IN++ +  +    V++N  RG L+DE  L+  L  G +
Sbjct: 203 PLTPETRHLINEEELALMKPGAVLVNTARGGLVDEDALLRALKSGKI 249

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score =  169 bits (430), Expect = 9e-51
 Identities = 82/244 (33%), Positives = 114/244 (46%), Gaps = 13/244 (5%)

Query: 21  LSERFTLLDPLLHSADSTHSFLSRHA-SSVRAILCLGPS-----PLTSDTLSLLPA-LEI 73
           LS    ++ P   + +     L         AI     S     P   + +S LP  L+I
Sbjct: 20  LSSIAEVIYPTSGTREEFIEALKEGKYGDFVAIYRTFGSAGETGPFDEELISPLPPSLKI 79

Query: 74  VVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGL 133
           +  + AG D +D+    +RGI V+N   A  E  AD  + L++  LR  S  +R  R G 
Sbjct: 80  IAHAGAGYDQIDVDALTKRGIQVSNTPGAVDEATADTALFLILGALRNFSRAERSARAGK 139

Query: 134 WPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP----GVSYPF 189
           W       L     GK +GI+GLG IG  +A++   FG  I Y +R + P         +
Sbjct: 140 WRGFLDLTLAHDPRGKTLGILGLGGIGKAIARKAAAFGMKIIYHNRSRLPEELEKALATY 199

Query: 190 YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVII-NVGRGALIDEKELVHF 248
           Y ++  L A SDV+ + C LT  T H+INK    A  K+GVII N  RGA+IDE  LV  
Sbjct: 200 YVSLDELLAQSDVVSLNCPLTAATRHLINKK-EFAKMKDGVIIVNTARGAVIDEDALVDA 258

Query: 249 LVRG 252
           L  G
Sbjct: 259 LESG 262

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  168 bits (428), Expect = 1e-50
 Identities = 68/207 (32%), Positives = 109/207 (52%), Gaps = 6/207 (2%)

Query: 52  ILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYV 111
            L +  +P+T + L+  P L+ +  + AG+D++DL+   +RGILV NA    +   A+ V
Sbjct: 48  ALIVSVTPVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELV 107

Query: 112 VGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFG 171
           + LL+ + RR+   D   R G W        G+ L GK VGI+GLG IG  VAKRL  FG
Sbjct: 108 LALLLALARRIPDADASQRRGEWDRKAFR--GTELAGKTVGIIGLGRIGRAVAKRLKAFG 165

Query: 172 CSIA----YTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGK 227
             +     Y+ R++          ++  L A++D+L +   LT ET  +IN + +  +  
Sbjct: 166 MKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKP 225

Query: 228 EGVIINVGRGALIDEKELVHFLVRGSL 254
             ++IN  RG ++DE  L+  L  G +
Sbjct: 226 GAILINAARGGVVDEDALLAALDSGKI 252

Length = 324

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  167 bits (425), Expect = 4e-50
 Identities = 72/219 (32%), Positives = 114/219 (52%), Gaps = 14/219 (6%)

Query: 42  LSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGN 101
           L         ++  G  P+T + L+  P L+++     G D++DL+  ++RGI+VTN   
Sbjct: 41  LIELLKDADGVIA-GLDPITEEVLAAAPRLKVISRYGVGYDNIDLEAAKKRGIVVTNTPG 99

Query: 102 AFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGS 161
           A S   A+  +GL++ + R++   DR VR G W      P+G+ L GK +GI+GLG IG 
Sbjct: 100 ANSNSVAELTIGLMLALARQIPQADREVRAGGWD----RPVGTELYGKTLGIIGLGRIGK 155

Query: 162 EVAKRLVPFGCSI-AY-----TSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHH 215
            VA+RL  FG  + AY         K+ GV    + ++  L  +SD + +   LT ET H
Sbjct: 156 AVARRLSGFGMKVLAYDPYPDEEFAKEHGVE---FVSLEELLKESDFISLHLPLTPETRH 212

Query: 216 MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
           +IN   +  +    ++IN  RG L+DE+ L   L  G +
Sbjct: 213 LINAAELALMKPGAILINTARGGLVDEEALYEALKSGRI 251

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  160 bits (407), Expect = 2e-47
 Identities = 65/220 (29%), Positives = 107/220 (48%), Gaps = 11/220 (5%)

Query: 38  THSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVT 97
           +   L    +   A++    +P+  + +     L+I+    AG D++D+   + +GI VT
Sbjct: 33  SKEELLERIADYDALITPLSTPVDKEIIDAAKNLKIIANYGAGFDNIDVDYAKEKGIPVT 92

Query: 98  NAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHG-AYPLGSTLGGKRVGIVGL 156
           N     +E  A+   GL++ + RR++  DR +R G +      + LG  L GK +GI+G+
Sbjct: 93  NTPAVSTEPTAELTFGLILALARRIAEGDRLMRRGGFLGWAPLFFLGHELAGKTLGIIGM 152

Query: 157 GSIGSEVAKRLVPFGCSIAYTSRKKKP-------GVSYPFYANVSGLAADSDVLIVCCAL 209
           G IG  VA+R   FG  I Y +R +         G +   Y ++  L  +SD + +    
Sbjct: 153 GRIGQAVARRAKAFGMKILYYNRHRLSEETEKELGAT---YVDLDELLKESDFVSLHAPY 209

Query: 210 TEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFL 249
           T ETHH+I+      +     +IN  RG L+DEK LV  L
Sbjct: 210 TPETHHLIDAAAFKLMKPTAYLINAARGPLVDEKALVDAL 249

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score =  158 bits (402), Expect = 1e-46
 Identities = 66/204 (32%), Positives = 104/204 (50%), Gaps = 4/204 (1%)

Query: 52  ILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYV 111
            L +  +P+T++ +  LP L+++V    G+D+VD+     RGI V N  +  +E+ AD+ 
Sbjct: 47  ALLVQYAPVTAEVIEALPRLKVIVRYGVGVDNVDVAAATERGIPVCNVPDYCTEEVADHA 106

Query: 112 VGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFG 171
           + L++ + R++  +DR VR G W      P+   L G  +G+VG G IG  VAKR   FG
Sbjct: 107 LALILALARKLPFLDRAVRAGGWDWTVGGPIRR-LRGLTLGLVGFGRIGRAVAKRAKAFG 165

Query: 172 CSIAYTSRKKKPGVSYPFYANVSG---LAADSDVLIVCCALTEETHHMINKDVMTALGKE 228
             +         GV+      V     L A SDV+ + C LT ET H+I+ + +  +   
Sbjct: 166 FRVIAYDPYVPDGVAALGGVRVVSLDELLARSDVVSLHCPLTPETRHLIDAEALALMKPG 225

Query: 229 GVIINVGRGALIDEKELVHFLVRG 252
             ++N  RG L+DE  L   L  G
Sbjct: 226 AFLVNTARGGLVDEAALARALKSG 249

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  152 bits (386), Expect = 2e-44
 Identities = 75/205 (36%), Positives = 106/205 (51%), Gaps = 17/205 (8%)

Query: 60  LTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNA--GNAFSEDGADYVVGLLVD 117
           + ++ L+  P L ++     G+D VDL+    RGI V N   GNA S   A++ V L++ 
Sbjct: 55  IDAELLAAAPRLRLIQQPGVGLDGVDLEAATARGIPVANIPGGNAESV--AEHAVMLMLA 112

Query: 118 VLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYT 177
           +LRR+   DR +R G W           L GK VGIVGLG+IG  VA+RL  FG  + Y 
Sbjct: 113 LLRRLPEADRELRAGRWGR-PEGRPSRELSGKTVGIVGLGNIGRAVARRLRGFGVEVIYY 171

Query: 178 SRKKKP-------GVSY-PFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEG 229
            R + P       GV Y         L A+SDV+ +   LT ET H+I  + + A+    
Sbjct: 172 DRFRDPEAEEKDLGVRYVELDE----LLAESDVVSLHVPLTPETRHLIGAEELAAMKPGA 227

Query: 230 VIINVGRGALIDEKELVHFLVRGSL 254
           ++IN  RG L+DE+ L+  L  G L
Sbjct: 228 ILINTARGGLVDEEALLAALRSGHL 252

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score =  140 bits (356), Expect = 2e-41
 Identities = 54/145 (37%), Positives = 75/145 (51%), Gaps = 4/145 (2%)

Query: 112 VGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFG 171
           + LL+ + RR+   DR VR G W       LG  L GK VGI+GLG IG  VA+RL  FG
Sbjct: 1   LALLLALARRIPEADRQVRAGRWRPDA--LLGRELSGKTVGIIGLGRIGRAVARRLKAFG 58

Query: 172 CSIAYTSRKKKPGVS--YPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEG 229
             +    R  K         Y ++  L A+SDV+ +   LT ET H+IN + +  +    
Sbjct: 59  MKVIAYDRYPKAEAEALGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKPGA 118

Query: 230 VIINVGRGALIDEKELVHFLVRGSL 254
           ++IN  RG L+DE  L+  L  G +
Sbjct: 119 ILINTARGGLVDEDALIAALKSGRI 143

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score =  142 bits (360), Expect = 2e-40
 Identities = 66/245 (26%), Positives = 107/245 (43%), Gaps = 20/245 (8%)

Query: 17  FNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVG 76
               L       +  + +A+     L+   +    +L   P P   + L   P L  +  
Sbjct: 13  HLERLRAAAPGAELRVVTAEE----LTEELADADVLLGNPPLP---ELLPAAPRLRWIQS 65

Query: 77  STAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRN---GL 133
           ++AG+D +   E   R +++TNA   F    A+YV+G ++   R+   + R+ RN     
Sbjct: 66  TSAGVDALLFPELLERDVVLTNARGIFGPPIAEYVLGYMLAFARK---LPRYARNQAERR 122

Query: 134 WPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFY--- 190
           W   G       L GK V IVGLG IG E+A+R   FG  +    R  +P          
Sbjct: 123 WQRRGPV---RELAGKTVLIVGLGDIGREIARRAKAFGMRVIGVRRSGRPAPPVVDEVYT 179

Query: 191 -ANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFL 249
              +  L  ++D ++    LT ET  + N +   A+    V+INVGRG+++DE  L+  L
Sbjct: 180 PDELDELLPEADYVVNALPLTPETRGLFNAERFAAMKPGAVLINVGRGSVVDEDALIEAL 239

Query: 250 VRGSL 254
             G +
Sbjct: 240 ESGRI 244

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score =  140 bits (355), Expect = 1e-39
 Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 4/217 (1%)

Query: 42  LSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGN 101
           L R       ++   P  + +D L   P L+I+  +  G D+ D++ C  RGI VT   +
Sbjct: 38  LLRRCKDADGLMAFMPDRIDADFLDACPRLKIIACALKGYDNFDVEACTARGIWVTIVPD 97

Query: 102 AFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGS 161
             +E  A+  +GLL+ + R + + DRFVR+G +        G+ L GK VGI+G+G++G 
Sbjct: 98  LLTEPTAELTIGLLIGLGRHILAGDRFVRSGKFGGWRPKFYGTGLDGKTVGILGMGALGR 157

Query: 162 EVAKRLVPFGCSIAYTSRKKKPGVSYPF----YANVSGLAADSDVLIVCCALTEETHHMI 217
            +A+RL  FG ++ Y                    +  L   SD L++   LT +T H+I
Sbjct: 158 AIARRLSGFGATLLYYDPHPLDQAEEQALNLRRVELDELLESSDFLVLALPLTPDTLHLI 217

Query: 218 NKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
           N + +  +    +++N  RG+++DE  +   L  G L
Sbjct: 218 NAEALAKMKPGALLVNPCRGSVVDEAAVAEALKSGHL 254

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score =  140 bits (354), Expect = 2e-39
 Identities = 74/212 (34%), Positives = 109/212 (51%), Gaps = 8/212 (3%)

Query: 49  VRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGA 108
           V A++ +    +  +     P L IV     G D++D++E  RRGI VTN     +E  A
Sbjct: 46  VDALVTMLSERIDCEVFEAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATA 105

Query: 109 DYVVGLLVDVLRRVSSIDRFVRNGLWPDHGA--YP---LGSTLGGKRVGIVGLGSIGSEV 163
           D+   LL+   RR+   D FVR+G W   G   +P   LG  + GK +GI+G G IG  V
Sbjct: 106 DFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAV 165

Query: 164 AKRLVPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKD 220
           A+R   FG  I Y SR +KP         Y  +  L  +SD + +   LT+ET+HMIN++
Sbjct: 166 ARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEE 225

Query: 221 VMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
            +  +    +++N  RG ++D K LV  L  G
Sbjct: 226 RLKLMKPTAILVNTARGKVVDTKALVKALKEG 257

Length = 333

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  138 bits (350), Expect = 5e-39
 Identities = 64/200 (32%), Positives = 102/200 (51%), Gaps = 15/200 (7%)

Query: 61  TSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNA--GNAFSEDGADYVVGLLVDV 118
           T++ +   P L+++  +  G+D++D++    RGILV NA   N  S   A++ + L++ +
Sbjct: 53  TAEVIEAAPRLKVIGRAGVGVDNIDVEAATARGILVVNAPGANTIS--VAEHTIALMLAL 110

Query: 119 LRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYT 177
            R +   D  +R G W D   +  G  L GK +GIVGLG IG EVA+R   FG   +AY 
Sbjct: 111 ARNIPQADASLRAGKW-DRKKFM-GVELRGKTLGIVGLGRIGREVARRARAFGMKVLAYD 168

Query: 178 -----SRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVII 232
                 R    GV      ++  L A++D + +   LT ET  +IN + +  +    ++I
Sbjct: 169 PYISAERAAAGGV---ELVSLDELLAEADFISLHTPLTPETRGLINAEELAKMKPGAILI 225

Query: 233 NVGRGALIDEKELVHFLVRG 252
           N  RG ++DE  L   L  G
Sbjct: 226 NTARGGIVDEAALADALKSG 245

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  136 bits (346), Expect = 2e-38
 Identities = 69/202 (34%), Positives = 107/202 (52%), Gaps = 9/202 (4%)

Query: 59  PLTSDTLSLLPALE-IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVD 117
            L ++ L+ LP L+ I V +T G ++VDL   + RGI VTN     ++  A +   LL+ 
Sbjct: 54  VLDAEVLAQLPNLKLIGVLAT-GYNNVDLAAAKERGITVTNVPGYSTDSVAQHTFALLLA 112

Query: 118 VLRRVSSIDRFVRNGLW---PD--HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGC 172
           + R V+  +  V+ G W   PD     YP+   L GK +GI+G G+IG  VA+    FG 
Sbjct: 113 LARLVAYHNDVVKAGEWQKSPDFCFWDYPI-IELAGKTLGIIGYGNIGQAVARIARAFGM 171

Query: 173 SIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVII 232
            + +  RK  P +    Y ++  L A SDV+ + C LT ET ++IN + +  +    ++I
Sbjct: 172 KVLFAERKGAPPLREG-YVSLDELLAQSDVISLHCPLTPETRNLINAEELAKMKPGAILI 230

Query: 233 NVGRGALIDEKELVHFLVRGSL 254
           N  RG L+DE+ L   L  G +
Sbjct: 231 NTARGGLVDEQALADALNSGKI 252

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  134 bits (339), Expect = 2e-37
 Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 26/224 (11%)

Query: 44  RHASSVRAILCLGPSPLTSDTLSLLPALE-----IVVGSTAGIDHVDLQ---ECRRRGIL 95
                   ++      LT +    L AL+      V    AG+DH+ L+   E    G++
Sbjct: 36  EALEDADVLVG---GRLTKE--EALAALKRLKLIQVPS--AGVDHLPLERLPE----GVV 84

Query: 96  V-TNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWP-DHGAYPLGSTLGGKRVGI 153
           V  N GN  S   A++ + L++ + +R+   D  +R G+W    G  P    L GK VGI
Sbjct: 85  VANNHGN--SPAVAEHALALILALAKRIVEYDNDLRRGIWHGRAGEEPESKELRGKTVGI 142

Query: 154 VGLGSIGSEVAKRLVPFGCSI-AYTSRKKKPGVS--YPFYANVSGLAADSDVLIVCCALT 210
           +G G IG E+A+ L  FG  +   +   K+   +      +++      +DV++V   LT
Sbjct: 143 LGYGHIGREIARLLKAFGMRVIGVSRSPKEDEGADFVGTLSDLDEALEQADVVVVALPLT 202

Query: 211 EETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
           ++T  +I    + A+    +++NVGRG ++DE+ L   L    +
Sbjct: 203 KQTRGLIGAAELAAMKPGAILVNVGRGPVVDEEALYEALKERPI 246

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  134 bits (339), Expect = 2e-37
 Identities = 63/205 (30%), Positives = 93/205 (45%), Gaps = 11/205 (5%)

Query: 58  SPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAG--NAFSEDGADYVVGLL 115
           +P+T   +   P L+++     G ++VD++    RGI V N    NA +   A++ VGL+
Sbjct: 55  APVTKKVIEAAPKLKLIGVCRGGPENVDVEAATERGIPVLNTPGRNAEAV--AEFTVGLM 112

Query: 116 VDVLRRVSSIDRFVRNGLWPDHGAYP---LGSTLGGKRVGIVGLGSIGSEVAKRLVPFGC 172
           +   R ++     +++G W     Y     G  L GK VGIVG G+IG  VAKRL  FG 
Sbjct: 113 LAETRNIARAHAALKDGEW-RKDYYNYDGYGPELRGKTVGIVGFGAIGRRVAKRLKAFGA 171

Query: 173 SI-AYTSRKKKPGVSYPFYANVS--GLAADSDVLIVCCALTEETHHMINKDVMTALGKEG 229
            +  Y        +       VS   L   SDV+ +   LT ET  MI  +    +    
Sbjct: 172 EVLVYDPYVDPEKIEADGVKKVSLEELLKRSDVVSLHARLTPETRGMIGAEEFALMKPTA 231

Query: 230 VIINVGRGALIDEKELVHFLVRGSL 254
             IN  R  L+DE  L+  L  G +
Sbjct: 232 YFINTARAGLVDEDALIEALEEGKI 256

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score =  132 bits (335), Expect = 7e-37
 Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 9/208 (4%)

Query: 46  ASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSE 105
           A    A++    +P+T++ L   P L+++     G+D++DL     RGILVTN     +E
Sbjct: 36  AKDADALIVRSTTPVTAEVLEAAPGLKVIARRGVGVDNIDLDAATERGILVTNVPGYSTE 95

Query: 106 DGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAK 165
             A+  VGL++ + RR+   D  VR G W   G  P+G  L GK +G++G G IG   A 
Sbjct: 96  SVAELTVGLILALARRIPEADASVRAGDWKKGG--PIGLELYGKTLGVIGGGGIGGIGAA 153

Query: 166 RLVPFGC-------SIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMIN 218
                G               ++           +  L    D++ +    T +T H+I 
Sbjct: 154 IAKALGMGVVAYDPYPNPERAEEGGVEVLLLDLLLLDLKESDDLINLAPPTTMKTGHIII 213

Query: 219 KDVMTALGKEGVIINVGRGALIDEKELV 246
            +    L     I N   G +I+E  L 
Sbjct: 214 NEARGMLKDAVAINNARGGGVIEEAALD 241

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  132 bits (334), Expect = 1e-36
 Identities = 68/214 (31%), Positives = 102/214 (47%), Gaps = 6/214 (2%)

Query: 44  RHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAF 103
             A    AIL      + ++ L   P L+ +     G D++DL   +  GI VTN     
Sbjct: 41  ELAKGADAILTAFTDKIDAELLDKAPGLKFISLRATGYDNIDLDYAKELGIGVTNVPEYS 100

Query: 104 SEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEV 163
               A++ + L++ +LR    ID   +N    D  A  +G  L  + VG+VG G IG  V
Sbjct: 101 PNAVAEHTIALILALLRNRKYIDERDKNQDLQD--AGVIGRELEDQTVGVVGTGKIGRAV 158

Query: 164 AKRLVPFGCS-IAYTSRKKKPGVSYPF-YANVSGLAADSDVLIVCCALTEETHHMINKDV 221
           A+R   FG   IAY   +          Y ++  L  +SD++ +   LT E HHMIN++ 
Sbjct: 159 AQRAKGFGMKVIAYDPFRNPELEDKGVKYVSLEELFKNSDIISLHVPLTPENHHMINEEA 218

Query: 222 MTALGKEGVI-INVGRGALIDEKELVHFLVRGSL 254
              L K+GVI IN  RG+L+D + L+  L  G +
Sbjct: 219 F-KLMKKGVIIINTARGSLVDTEALIEALDSGKI 251

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  130 bits (330), Expect = 6e-36
 Identities = 72/243 (29%), Positives = 106/243 (43%), Gaps = 15/243 (6%)

Query: 21  LSERFTLLDPLLHSADSTHSFLSRHASSVRAIL-CLGPSPLTSDTLSLLPALEIVVGSTA 79
           L+    +L P   +  +     +   + V  ++   G  PL ++ L+  P L  VV   A
Sbjct: 23  LAALAEVLPPTPDADFAAEELRAL-LAGVEVLVTGWGTPPLDAELLARAPRLRAVV-HAA 80

Query: 80  G--IDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDH 137
           G     V       RGILVT+A +A +E  A++ +  ++  LRR+       R G     
Sbjct: 81  GSVRGLVT-DAVWERGILVTSAADANAEPVAEFTLAAILLALRRIPRFAAAYRAGRDWGW 139

Query: 138 GAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSI-AYT-----SRKKKPGVSYPFYA 191
                G  L G+ VGIVG G IG  V + L PFG  +  Y      +     GV      
Sbjct: 140 PTRRGGRGLYGRTVGIVGFGRIGRAVVELLRPFGLRVLVYDPYLPAAEAAALGVE---LV 196

Query: 192 NVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVR 251
           ++  L A SDV+ +   LT ET  MI+  ++  +      IN  RGAL+DE  L+  L  
Sbjct: 197 SLDELLARSDVVSLHAPLTPETRGMIDARLLALMRDGATFINTARGALVDEAALLAELRS 256

Query: 252 GSL 254
           G L
Sbjct: 257 GRL 259

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  130 bits (328), Expect = 9e-36
 Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 7/206 (3%)

Query: 52  ILCLGPSPLTSDTLSLLPALE-IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADY 110
           I+ +   PL  + +     L+ I V  T G+DHVDL+ C+ RGI V+NA    +E  A+ 
Sbjct: 51  IVMIANMPLPGEVIEACKNLKMISVAFT-GVDHVDLEACKERGITVSNAAGYSTEAVAEL 109

Query: 111 VVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPF 170
            +GL +D+LR +   D  VR G         +G  L GK VGIVG G+IG  VA+    F
Sbjct: 110 TIGLAIDLLRNIVPCDAAVRAGGTKA---GLIGRELAGKTVGIVGTGAIGLRVARLFKAF 166

Query: 171 GCSIAYTSRKKKPGVSYPF--YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKE 228
           GC +   SR +K         Y ++  L A+SD++ +   L +ET  +I K+ +  + + 
Sbjct: 167 GCKVLAYSRSEKEEAKALGIEYVSLDELLAESDIVSLHLPLNDETKGLIGKEKLALMKES 226

Query: 229 GVIINVGRGALIDEKELVHFLVRGSL 254
            ++IN  RG ++D + L   L  G +
Sbjct: 227 AILINTARGPVVDNEALADALNEGKI 252

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  128 bits (325), Expect = 2e-35
 Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 10/210 (4%)

Query: 50  RAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDH-VDLQECRRRGILVTNAGNAFSEDGA 108
            A++  G +    + L   P +  V    AG++  V+       G   TNA  A++E  A
Sbjct: 30  DALVWTGSAREP-ERLPASPGVRWVQLPFAGVEAFVEAGVITDPGRRWTNAAGAYAETVA 88

Query: 109 DYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLV 168
           ++ + LL+  LR+   +    R   W       L + L G  V IVG G IG  +   L 
Sbjct: 89  EHALALLLAGLRQ---LPARARATTWDPAEEDDLVTLLRGSTVAIVGAGGIGRALIPLLA 145

Query: 169 PFGCSIAYTSRKKKP----GVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTA 224
           PFG  +   +R  +P      + P          D+D +++   LT ET H+++   + A
Sbjct: 146 PFGAKVIAVNRSGRPVEGADETVPADRLDEVWP-DADHVVLAAPLTPETRHLVDAAALAA 204

Query: 225 LGKEGVIINVGRGALIDEKELVHFLVRGSL 254
           +     ++NV RG L+D   LV  L  G +
Sbjct: 205 MKPHAWLVNVARGPLVDTDALVDALRSGEI 234

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score =  128 bits (324), Expect = 3e-35
 Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 12/182 (6%)

Query: 79  AGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLW--PD 136
           AG+D++ L+  +++GIL+TN     S   A+++VG ++++ + +    +  +   W    
Sbjct: 69  AGVDYLPLEYIKKKGILLTNNSGIHSIPIAEWIVGYILEIYKGLKKAYKNQKEKKWKMDS 128

Query: 137 HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSI--AYTSRKKKPGVS--YPFYAN 192
                    L GK +  +G GSIG E+AKRL  FG  +    TS +        YP    
Sbjct: 129 SL-----LELYGKTILFLGTGSIGQEIAKRLKAFGMKVIGVNTSGRDVEYFDKCYPL-EE 182

Query: 193 VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
           +  +  ++D+++    LTEETHH+ ++     + K  + INVGRG  +DE  L+  L   
Sbjct: 183 LDEVLKEADIVVNVLPLTEETHHLFDEAFFEQMKKGALFINVGRGPSVDEDALIEALKNK 242

Query: 253 SL 254
            +
Sbjct: 243 QI 244

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score =  125 bits (317), Expect = 5e-34
 Identities = 66/209 (31%), Positives = 104/209 (49%), Gaps = 23/209 (11%)

Query: 58  SPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVD 117
           S L ++ L  LP L+++   + G DH+DL+ CR RGI V N  +      A++   LL+ 
Sbjct: 51  SRLDAEVLEKLPRLKLIATRSTGFDHIDLEACRERGIAVCNVPDYGEATVAEHAFALLLA 110

Query: 118 VLRRV-SSIDR-----FVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFG 171
           + R++  +I+R     F + GL         G  L GK +G+VG G IG  VA+    FG
Sbjct: 111 LSRKLREAIERTRRGDFSQAGL--------RGFELAGKTLGVVGTGRIGRRVARIARGFG 162

Query: 172 CSI-AYTSRKKKP-----GVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTAL 225
             + AY     +      G  Y    ++  L  +SD++ +    T +THH+IN++    +
Sbjct: 163 MKVLAYDVVPDEELAERLGFRY---VSLEELLQESDIISLHVPYTPQTHHLINRENFALM 219

Query: 226 GKEGVIINVGRGALIDEKELVHFLVRGSL 254
               V+IN  RGA++D + LV  L  G L
Sbjct: 220 KPGAVLINTARGAVVDTEALVRALKEGKL 248

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score =  122 bits (308), Expect = 6e-33
 Identities = 63/190 (33%), Positives = 96/190 (50%), Gaps = 7/190 (3%)

Query: 69  PALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRF 128
             L+I+  +  G+D++D++  +++GI V N   A S   A+ V+GL++ + R +   +R 
Sbjct: 62  KNLKIIARAGVGLDNIDVEYAKKKGIKVINTPGASSNSVAELVIGLMLSLARFIHRANRE 121

Query: 129 VRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYP 188
           ++ G W     Y  G  L GK +GI+G G IG EVAK     G ++       K   +  
Sbjct: 122 MKLGKWN-KKKY-KGIELRGKTLGIIGFGRIGREVAKIARALGMNVIAYDPYPKDEQAVE 179

Query: 189 FYANVSGLA---ADSDVLIVCCALTEETHHMINKDVMTALGKEGV-IINVGRGALIDEKE 244
                  L     +SD + +   LT ET HMINK  +  L K+G  IIN  RG +IDE+ 
Sbjct: 180 LGVKTVSLEELLKNSDFISLHVPLTPETKHMINKKEL-ELMKDGAIIINTSRGGVIDEEA 238

Query: 245 LVHFLVRGSL 254
           L+  L  G L
Sbjct: 239 LLEALKSGKL 248

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score =  123 bits (312), Expect = 3e-32
 Identities = 68/209 (32%), Positives = 111/209 (53%), Gaps = 12/209 (5%)

Query: 51  AILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADY 110
           A++    + +T + ++  P L+++  +  G+D++D++    RGILV NA    +   A++
Sbjct: 43  ALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEH 102

Query: 111 VVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPF 170
            + +L+   R +   D  ++ G W D  A+ +G+ L GK +G++GLG IGS VAKR   F
Sbjct: 103 ALAMLLAAARNIPQADASLKEGEW-DRKAF-MGTELYGKTLGVIGLGRIGSIVAKRAKAF 160

Query: 171 GCSI-AY-----TSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTA 224
           G  + AY       R ++ GV      ++  L A +D + V   LT ET  +I  + + A
Sbjct: 161 GMKVLAYDPYISPERAEQLGVEL--VDDLDELLARADFITVHTPLTPETRGLIGAEEL-A 217

Query: 225 LGKEGVII-NVGRGALIDEKELVHFLVRG 252
             K+GVII N  RG +IDE  L   L  G
Sbjct: 218 KMKKGVIIVNCARGGIIDEAALYEALEEG 246

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  122 bits (310), Expect = 7e-32
 Identities = 67/182 (36%), Positives = 95/182 (52%), Gaps = 17/182 (9%)

Query: 80  GIDHVDLQECRRRGILVTNA--GNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDH 137
           G+D+VD+    RRGI+V NA  GN  S   A++ + L++ + R +      ++ G W + 
Sbjct: 74  GVDNVDVPAATRRGIIVVNAPTGNTIS--AAEHTIALMLALARNIPQAHASLKAGKW-ER 130

Query: 138 GAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAY-----TSRKKKPGVSYPFYA 191
             + +G  L GK +GI+GLG IGSEVAKR   FG   IAY       R  + GV      
Sbjct: 131 KKF-MGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPERAAQLGVE---LV 186

Query: 192 NVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGV-IINVGRGALIDEKELVHFLV 250
           ++  L A +D + +   LT ET  +I  + + A  K GV IIN  RG +IDE  L   L 
Sbjct: 187 SLDELLARADFITLHTPLTPETRGLIGAEEL-AKMKPGVRIINCARGGIIDEAALAEALK 245

Query: 251 RG 252
            G
Sbjct: 246 SG 247

Length = 526

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  113 bits (286), Expect = 1e-29
 Identities = 62/198 (31%), Positives = 102/198 (51%), Gaps = 6/198 (3%)

Query: 60  LTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDG-ADYVVGLLVDV 118
              +       L+++     G D+VDL+     G++VT    A   D  A++ V L++ V
Sbjct: 59  FDKEFFEYNDGLKLIARHGIGYDNVDLKAATEHGVIVTRVPGAVERDAVAEHAVALILTV 118

Query: 119 LRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVP-FGCSI-AY 176
           LR+++     V+ G W +   + +G  L GK VGI+G G+IGS VA+ L   F   + AY
Sbjct: 119 LRKINQASEAVKEGKWTERANF-VGHELSGKTVGIIGYGNIGSRVAEILKEGFNAKVLAY 177

Query: 177 --TSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINV 234
                ++          ++  L A+SD++ +   LTEET+HMIN+   + + K  +++N 
Sbjct: 178 DPYVSEEVIKKKGAKPVSLEELLAESDIISLHAPLTEETYHMINEKAFSKMKKGVILVNT 237

Query: 235 GRGALIDEKELVHFLVRG 252
            RG LIDE+ L+  L  G
Sbjct: 238 ARGELIDEEALIEALKSG 255

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score =  112 bits (283), Expect = 5e-29
 Identities = 58/217 (26%), Positives = 108/217 (49%), Gaps = 29/217 (13%)

Query: 60  LTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTN-----AGNAFSEDGADYVVGL 114
           L +D ++    +++++    G++ VD+    + GI V        GNA S   A+  + L
Sbjct: 72  LDADIIARASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAAS--CAEMAIYL 129

Query: 115 LVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSI 174
           ++ +LR+ + +   ++       G  P+G TL GK V I+G G+IG E+AKRL PFG  +
Sbjct: 130 MLGLLRKQNEMQISLKA---RRLGE-PIGDTLFGKTVFILGYGAIGIELAKRLRPFGVKL 185

Query: 175 AYTSRKKKPGVSYPFYANVSG-----------------LAADSDVLIVCCALTEETHHMI 217
             T R+             +G                  A ++D++++CC LT+ET  ++
Sbjct: 186 LAT-RRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIV 244

Query: 218 NKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
           N + ++++ K  +++N+ RG L+D   ++  L  G L
Sbjct: 245 NDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHL 281

Length = 347

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score =  111 bits (280), Expect = 1e-28
 Identities = 72/208 (34%), Positives = 103/208 (49%), Gaps = 22/208 (10%)

Query: 50  RAILCLGPSPLTSDTLSLLPALEIVVGST--AGIDHVDLQECRRRGILVTNAGNAFSEDG 107
             I  LG S ++++ L  L    +   ST   G DH+DL   +  GI V+N    +S + 
Sbjct: 46  DGISILGKSKISAELLEKLKEAGVKYISTRSIGYDHIDLDAAKELGIKVSNV--TYSPNS 103

Query: 108 -ADYVVGLLVDVLRRVSSIDR------FVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIG 160
            ADY V L++  LR+   I +      +   GL         G  L    VG++G G IG
Sbjct: 104 VADYTVMLMLMALRKYKQIMKRAEVNDYSLGGL--------QGRELRNLTVGVIGTGRIG 155

Query: 161 SEVAKRLVPFGCSI-AYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINK 219
             V K L  FGC I AY     +    Y  Y ++  L  +SD++ +   LTEET+H+INK
Sbjct: 156 QAVIKNLSGFGCKILAYDPYPNEEVKKYAEYVDLDTLYKESDIITLHTPLTEETYHLINK 215

Query: 220 DVMTALGKEGV-IINVGRGALIDEKELV 246
           + + A  K+GV IIN  RG LID + L+
Sbjct: 216 ESI-AKMKDGVIIINTARGELIDTEALI 242

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score =  110 bits (276), Expect = 2e-28
 Identities = 65/199 (32%), Positives = 109/199 (54%), Gaps = 14/199 (7%)

Query: 60  LTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVL 119
           +  + LS LP L+++  +  G ++VD++  +++GI V N     +E  A +   +L+ +L
Sbjct: 53  IDKEVLSQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLL 112

Query: 120 RRVSSIDRFVRNGLWPD-----HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSI 174
            R++  DR+V++G + +     H + PLG  + GK+ GI+GLG+IG  VAK    FG  +
Sbjct: 113 GRINYYDRYVKSGEYSESPIFTHISRPLG-EIKGKKWGIIGLGTIGKRVAKIAQAFGAKV 171

Query: 175 AY--TSRKKKPGVSYPFYANVS--GLAADSDVLIVCCALTEETHHMINKDVMTALGKEGV 230
            Y  TS K K       Y  VS   L   SD++ +   L E+T ++I    +  L    +
Sbjct: 172 VYYSTSGKNKN----EEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAI 227

Query: 231 IINVGRGALIDEKELVHFL 249
           +INVGRG +++EK+L   L
Sbjct: 228 LINVGRGGIVNEKDLAKAL 246

Length = 311

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score =  110 bits (276), Expect = 5e-28
 Identities = 62/211 (29%), Positives = 102/211 (48%), Gaps = 21/211 (9%)

Query: 57  PSPLTSDTLSLLPALEIVVGSTAGI--DHVDLQECRRRGILVTNAGNAFSEDGADYVVGL 114
           P+ +T++ ++    L++ +  TAGI  DHVDLQ    RGI V     +     A++VV +
Sbjct: 71  PAYMTAERIAKAKNLKLAL--TAGIGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMM 128

Query: 115 LVDVLRRVSSIDRFVRNGLW--PD--HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPF 170
           ++ ++R           G W   D    AY     L GK VG VG G IG  V +RL PF
Sbjct: 129 ILILVRNYVPGHEQAIEGGWNVADVVKRAY----DLEGKTVGTVGAGRIGLRVLRRLKPF 184

Query: 171 GCSIAYTSRKKKP-------GVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMT 223
              + Y  R + P       G++   +A++  + +  DV+ + C L  ET  + NK++++
Sbjct: 185 DVHLLYYDRHRLPEEVEKELGLT--RHADLEDMVSKCDVVTINCPLHPETEGLFNKELLS 242

Query: 224 ALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
            + K   ++N  RG + D + +   L  G L
Sbjct: 243 KMKKGAYLVNTARGKICDREAVAEALESGHL 273

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  108 bits (273), Expect = 6e-28
 Identities = 60/209 (28%), Positives = 96/209 (45%), Gaps = 16/209 (7%)

Query: 51  AILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVD--LQECRRRGILVTNAGNAFSEDGA 108
            +     +P   + L  LP L +V   +AG D V   L E    G+ + NA        A
Sbjct: 41  VVPPYMAAPPVLEALRALPRLRVVQTLSAGYDGVLPLLPE----GVTLCNARGVHDASTA 96

Query: 109 DYVVGLLVDVLRRVSSIDRFVRN---GLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAK 165
           +  V L++  LR    + RFVR    G W          +L  +RV IVG GSIG  + +
Sbjct: 97  ELAVALILASLRG---LPRFVRAQARGRW----EPRRTPSLADRRVLIVGYGSIGRAIER 149

Query: 166 RLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTAL 225
           RL PF   +   +R  +PG        +  L  ++DV+++   LT+ET  +++ + +  +
Sbjct: 150 RLAPFEVRVTRVARTARPGEQVHGIDELPALLPEADVVVLIVPLTDETRGLVDAEFLARM 209

Query: 226 GKEGVIINVGRGALIDEKELVHFLVRGSL 254
               +++NV RG ++D   LV  L  G L
Sbjct: 210 PDGALLVNVARGPVVDTDALVAELASGRL 238

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  107 bits (270), Expect = 2e-27
 Identities = 54/195 (27%), Positives = 98/195 (50%), Gaps = 15/195 (7%)

Query: 69  PALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRF 128
           P+L+ +  + AG++++D+    +RGI+V N   A +   A+ V+ +++ + R +    ++
Sbjct: 49  PSLKAIARAGAGVNNIDVDAASKRGIVVFNTPGANANAVAELVIAMMLALSRNIIQAIKW 108

Query: 129 VRNGLWPD-------HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAY---- 176
           V NG   D            +G+ L GK +G++GLG+IG  VA   +  G   I Y    
Sbjct: 109 VTNGDGDDISKGVEKGKKQFVGTELRGKTLGVIGLGNIGRLVANAALALGMKVIGYDPYL 168

Query: 177 -TSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVI-INV 234
                 K  V      ++  L A +D + +   LT+ET  +IN +++  + K G I +N 
Sbjct: 169 SVEAAWKLSVEVQRVTSLEELLATADYITLHVPLTDETRGLINAELLAKM-KPGAILLNF 227

Query: 235 GRGALIDEKELVHFL 249
            RG ++DE+ L+  L
Sbjct: 228 ARGEIVDEEALLEAL 242

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score =  108 bits (271), Expect = 3e-27
 Identities = 67/211 (31%), Positives = 105/211 (49%), Gaps = 21/211 (9%)

Query: 57  PSPLTSDTLSLLPALEIVVGSTAGI--DHVDLQECRRRGILVTNAGNAFSEDGADYVVGL 114
           P+ LT++ ++  P L++ +  TAGI  DHVDLQ     GI V     + S   A++VV +
Sbjct: 101 PAYLTAERIAKAPNLKLAI--TAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMM 158

Query: 115 LVDVLRRVSSIDRFVRNGLW--PDHG--AYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPF 170
           ++ ++R      R    G W   D    +Y     L G  VGIVG G IG  V +RL PF
Sbjct: 159 ILALVRNYEPSHRQAVEGGWNIADCVSRSY----DLEGMTVGIVGAGRIGLAVLRRLKPF 214

Query: 171 GCSIAYTSRKKKP-------GVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMT 223
              + YT R + P       G++Y  + +   L +  DV+ + C L  ET H+ + DV++
Sbjct: 215 DVKLHYTDRHRLPEEVEQELGLTY--HVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLS 272

Query: 224 ALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
            + +   ++N  RG ++D   +V  L  G L
Sbjct: 273 RMKRGSYLVNTARGKIVDRDAVVRALESGHL 303

Length = 385

>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

 Score =  105 bits (264), Expect = 1e-26
 Identities = 56/198 (28%), Positives = 93/198 (46%), Gaps = 5/198 (2%)

Query: 62  SDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRR 121
           +  L  +P L      + G D+ D+     R IL+ +     +E  AD ++ L++   RR
Sbjct: 58  AALLEKMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARR 117

Query: 122 VSSIDRFVRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSR 179
           V  +   V+ G W    G    G+ +  K +GIVG+G IG  +A+R    F   I Y +R
Sbjct: 118 VVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNAR 177

Query: 180 KKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGR 236
           +        F   Y ++  L  +SD + +   LT+ETHH+   +    +    + IN GR
Sbjct: 178 RHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGR 237

Query: 237 GALIDEKELVHFLVRGSL 254
           G ++DE  L+  L +G +
Sbjct: 238 GPVVDENALIAALQKGEI 255

Length = 323

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score =  104 bits (262), Expect = 4e-26
 Identities = 60/193 (31%), Positives = 97/193 (50%), Gaps = 31/193 (16%)

Query: 75  VGS-TAGIDHVDLQECRRRGILVTNAG--NAFSEDGADYVVGLLVDVLRRVSSIDRFVRN 131
           VG+ T G DH+D    + RGI   NA   NA S   A+YV+  L+               
Sbjct: 61  VGTATIGTDHIDTDYLKERGIGFANAPGCNANSV--AEYVLSALL--------------- 103

Query: 132 GLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKKPGVSYPFY 190
                  A   G +L GK VGIVG+G++GS +A+RL   G + +     + +      F 
Sbjct: 104 -----VLAQRQGFSLKGKTVGIVGVGNVGSRLARRLEALGMNVLLCDPPRAEAEGDPGF- 157

Query: 191 ANVSGLAADSDVLIVCCALTEE----THHMINKDVMTALGKEGVIINVGRGALIDEKELV 246
            ++  L A++D++ +   LT +    T+H++++D + AL    ++IN  RGA+ID + L+
Sbjct: 158 VSLEELLAEADIITLHVPLTRDGEHPTYHLLDEDFLAALKPGQILINASRGAVIDNQALL 217

Query: 247 HFLVRGSLVELVL 259
             L RG  + +VL
Sbjct: 218 ALLQRGKDLRVVL 230

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  102 bits (258), Expect = 2e-25
 Identities = 70/192 (36%), Positives = 101/192 (52%), Gaps = 32/192 (16%)

Query: 79  AGIDHVDLQECRRRGILVTNAGNAFSEDG-ADYVVGLLVDVLRRVS-SIDRFVR------ 130
           AG ++VDL+  +  GI V     A+S    A++ V LL+ + R++  + +R VR      
Sbjct: 77  AGFNNVDLKAAKELGITVVRV-PAYSPYAVAEHAVALLLALNRKIHRAYNR-VREGNFSL 134

Query: 131 NGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSI----AYTSRK-KKPGV 185
           +GL        LG  L GK VG++G G IG   A+ L  FGC +     Y + +  K GV
Sbjct: 135 DGL--------LGFDLHGKTVGVIGTGKIGQAFARILKGFGCRVLAYDPYPNPELAKLGV 186

Query: 186 SYPFYANVS--GLAADSDVLIVCCALTEETHHMINKDVMTALGKEGV-IINVGRGALIDE 242
            Y     V    L A+SD++ + C LT ETHH+IN + + A  K+GV +IN  RG LID 
Sbjct: 187 EY-----VDLDELLAESDIISLHCPLTPETHHLINAETI-AKMKDGVMLINTSRGGLIDT 240

Query: 243 KELVHFLVRGSL 254
           K L+  L  G +
Sbjct: 241 KALIEALKSGKI 252

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 99.3 bits (248), Expect = 3e-24
 Identities = 57/174 (32%), Positives = 97/174 (55%), Gaps = 2/174 (1%)

Query: 79  AGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHG 138
           AG++++DL+  + +GI + NA     +   ++ +G+L+ +  +++  D+ VRNG+W   G
Sbjct: 71  AGLENIDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLALFNKLNRADQEVRNGIWDREG 130

Query: 139 AYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAA 198
               G  L GK VGI+G G++G   AKRL  FGC +    + K  G +Y    ++  L  
Sbjct: 131 NR--GVELMGKTVGIIGYGNMGKAFAKRLSGFGCKVIAYDKYKNFGDAYAEQVSLETLFK 188

Query: 199 DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
           ++D+L +   LT ET  M+NK+ +++  K    IN  RG ++  K+LV  L  G
Sbjct: 189 EADILSLHIPLTPETRGMVNKEFISSFKKPFYFINTARGKVVVTKDLVKALKSG 242

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score = 98.7 bits (247), Expect = 3e-24
 Identities = 59/198 (29%), Positives = 95/198 (47%), Gaps = 9/198 (4%)

Query: 59  PLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDV 118
           P  +  L  LP L+++V +      +DL   + RGI+V   G       A+    L++ +
Sbjct: 58  PFPAALLERLPNLKLLVTTGMRNASIDLAAAKERGIVVCGTGGG-PTATAELTWALILAL 116

Query: 119 LRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYT 177
            R +   D  +R G W       LG+ L GK +GIVGLG IG+ VA+    FG   IA++
Sbjct: 117 ARNLPEEDAALRAGGWQTT----LGTGLAGKTLGIVGLGRIGARVARIGQAFGMRVIAWS 172

Query: 178 SR-KKKPGVSYPFYANVS--GLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINV 234
           S    +   +    A VS   L A SDV+ +   L++ T  ++  + +  +    +++N 
Sbjct: 173 SNLTAERAAAAGVEAAVSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTALLVNT 232

Query: 235 GRGALIDEKELVHFLVRG 252
            RG L+DE  L+  L  G
Sbjct: 233 SRGPLVDEGALLAALRAG 250

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score = 96.4 bits (241), Expect = 3e-23
 Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 34/216 (15%)

Query: 46  ASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQE-------CRRRGILVTN 98
            + V   L   P P     L+ LP L+ +    AG+DH+            R     + +
Sbjct: 37  PADVDYALVWKPPP---GLLARLPNLKAIFSLGAGVDHLLADPDLPDVPIVR-----LVD 88

Query: 99  AGNAFSEDGADYVVGLLVDVLRRVSSIDRFV---RNGLWPDHGAYPLGSTLGGKRVGIVG 155
            G   ++  A+YV+  ++ + R    +DR+    R G+W      P        RVG++G
Sbjct: 89  PG--LAQGMAEYVLAAVLRLHRD---MDRYAAQQRRGVWKPLPQRPAAER----RVGVLG 139

Query: 156 LGSIGSEVAKRLVPFGCSIAYTSRKKK--PGVSYPFYANVSGLA---ADSDVLIVCCALT 210
           LG +G+ VA+RL   G  ++  SR  K   GV+  F+    GL    A +D+L+    LT
Sbjct: 140 LGELGAAVARRLAALGFPVSGWSRSPKDIEGVT-CFHGE-EGLDAFLAQTDILVCLLPLT 197

Query: 211 EETHHMINKDVMTALGKEGVIINVGRGALIDEKELV 246
            ET  ++N +++  L +   +INVGRG  + E +L+
Sbjct: 198 PETRGILNAELLARLPRGAALINVGRGPHLVEADLL 233

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score = 95.3 bits (238), Expect = 9e-23
 Identities = 62/185 (33%), Positives = 92/185 (49%), Gaps = 15/185 (8%)

Query: 78  TAGIDHVDLQECRRRGILVTNAGNAFSEDG-ADYVVGLLVDVLRRVSSIDRFVRNG--LW 134
           +AG+D +DL   +  G+ +TN   A+S    A++ V   +++LR    IDR V  G   W
Sbjct: 76  SAGVDMIDLDLAKENGLKITNVP-AYSPRAIAEFAVTQALNLLRNTPEIDRRVAKGDFRW 134

Query: 135 PDHGAYPL-GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKKPGV-SYPFYA 191
               A  L G  +    VGI+G G IGS  AK    FG   IAY      P +  +  Y 
Sbjct: 135 ----APGLIGREIRDLTVGIIGTGRIGSAAAKIFKGFGAKVIAY-DPYPNPELEKFLLYY 189

Query: 192 -NVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVI-INVGRGALIDEKELVHFL 249
            ++  L   +D++ +   LT+E HH+IN +   A  K+G I +N  RG L+D K L+  L
Sbjct: 190 DSLEDLLKQADIISLHVPLTKENHHLINAEAF-AKMKDGAILVNAARGGLVDTKALIDAL 248

Query: 250 VRGSL 254
             G +
Sbjct: 249 DSGKI 253

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 93.2 bits (232), Expect = 4e-22
 Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 13/167 (7%)

Query: 93  GILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVG 152
           G +VT A    +E  A++V+  ++   +R+  I        W      PLGS L G  +G
Sbjct: 85  GPVVTCARGVAAEAIAEFVLAAILAAAKRLPEI-WVKGAEQWRRE---PLGS-LAGSTLG 139

Query: 153 IVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP----GVSYPFYANVSGLAADSDVLIVCCA 208
           IVG G+IG  +A+R +  G  +    R  +P    GV     A+++ L A SD L++   
Sbjct: 140 IVGFGAIGQALARRALALGMRVLALRRSGRPSDVPGVEA--AADLAELFARSDHLVLAAP 197

Query: 209 LTEETHHMINKDVMTALGKEGV-IINVGRGALIDEKELVHFLVRGSL 254
           LT ET H+IN DV+ A  K G+ +IN+ RG L+D++ L+  L  G +
Sbjct: 198 LTPETRHLINADVL-AQAKPGLHLINIARGGLVDQEALLEALDSGRI 243

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score = 91.8 bits (228), Expect = 1e-21
 Identities = 60/217 (27%), Positives = 97/217 (44%), Gaps = 25/217 (11%)

Query: 60  LTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVL 119
            T +TL+ LP L+++  +  G ++VDL   +  GI V N     S    ++V+G++  + 
Sbjct: 55  FTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALK 114

Query: 120 RRVSSIDRFVRNGLWPDHGA-----YPL----GSTLGGKRVGIVGLGSIGSEVAKRLVPF 170
             +    R   +  W          YP+    GSTLG     + G G +G+EV +     
Sbjct: 115 HSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLG-----VFGKGCLGTEVGRLAQAL 169

Query: 171 GCSIAYTSRKKKPGVS-----YPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTAL 225
           G  + Y   K   G S     Y  +  V   A   D++ + C LTE T ++IN + +  +
Sbjct: 170 GMKVLYAEHK---GASVCREGYTPFEEVLKQA---DIVTLHCPLTETTQNLINAETLALM 223

Query: 226 GKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCL 262
                +IN GRG L+DE+ L+  L  G +    L  L
Sbjct: 224 KPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVL 260

Length = 314

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score = 90.9 bits (226), Expect = 3e-21
 Identities = 68/247 (27%), Positives = 102/247 (41%), Gaps = 26/247 (10%)

Query: 20  PLSERFTLLDPL-LHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGST 78
           PL + F   D L LH A +      R   +  AI       L +  L+  P L++++ + 
Sbjct: 20  PLEQAF---DELQLHDATTPEQVAERLRGAQVAIS--NKVALDAAALAAAPQLKLILVAA 74

Query: 79  AGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLW---- 134
            G ++VDL   R RGI V N     +   A + + LL+ +  R+    + V  G W    
Sbjct: 75  TGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSS 134

Query: 135 ----PDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSI---AYTSRKKKPGVSY 187
                D         L GK +G++G G +G  VA+    FG  +       R  +P    
Sbjct: 135 QFCLLDFPI----VELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPARPD-RL 189

Query: 188 PFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVH 247
           P       L    D L + C LTE T H+I    +  +    ++IN  RG L+DE+ L  
Sbjct: 190 PLDE----LLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALAD 245

Query: 248 FLVRGSL 254
            L  G L
Sbjct: 246 ALRSGHL 252

Length = 317

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score = 86.5 bits (214), Expect = 1e-19
 Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 7/173 (4%)

Query: 78  TAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDH 137
           +AG+DH+D+       +L +NAG A+S   A++   LL+   + +   +  ++NG +   
Sbjct: 57  SAGVDHIDVSGIPENVVLCSNAG-AYSISVAEHAFALLLAWAKNICENNYNMKNGNF-KQ 114

Query: 138 GAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSI-AYTSRKKKPGVSYPFYANVSGL 196
               L   L  K +GI+G G IG  VA     FG +I AYT      G+S   Y     +
Sbjct: 115 SPTKL---LYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVNDGISS-IYMEPEDI 170

Query: 197 AADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFL 249
              SD +++   LT+ET  MIN  +++   K   IINV R  ++D+ ++++FL
Sbjct: 171 MKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFL 223

Length = 303

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score = 85.3 bits (211), Expect = 6e-19
 Identities = 56/193 (29%), Positives = 98/193 (50%), Gaps = 25/193 (12%)

Query: 80  GIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGA 139
           G ++VD++   + GI V N     +E  A+    L +   RR+   D F+R GL+   G 
Sbjct: 96  GYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY--EGW 153

Query: 140 YP---LGSTLGGKRVGIVGLGSIGSEVAKRLVP-FGCSIAY-----TSRKKK-------- 182
            P   +G+ L G+ VG++G G IGS  A+ +V  F  ++ Y     ++R +K        
Sbjct: 154 LPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQF 213

Query: 183 ------PGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGR 236
                   V++   +++  +  ++DV+ +   L + T+H+INK+ +  + KE V++N  R
Sbjct: 214 LKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASR 273

Query: 237 GALIDEKELVHFL 249
           G +IDE  LV  L
Sbjct: 274 GPVIDEVALVEHL 286

Length = 386

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 80.4 bits (199), Expect = 2e-17
 Identities = 52/228 (22%), Positives = 83/228 (36%), Gaps = 28/228 (12%)

Query: 55  LGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQEC-RRRGILVTNAGNAFSEDGADYVVG 113
           +  +         +P L +V   +AG DH       +   + +  A        A++V+G
Sbjct: 39  ILCTFHPHPDAEDVPNLRLVQLFSAGADHWLGHPLYKDPEVPLCTASGIHGPQIAEWVIG 98

Query: 114 LLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS 173
             + +           +   W             GKRVGI+G GSIG + A+     G  
Sbjct: 99  TWLVLSHHFLQYIELQKEQTWGRRQEAYSVEDSVGKRVGILGYGSIGRQTARLAQALGME 158

Query: 174 -IAYTSRKKK------------PGV-----SYP--FYANVSG------LAADSDVLIVCC 207
             AYT   +             PG      S P  +++          L  D D+L+V  
Sbjct: 159 VYAYTRSPRPTPESRKDDGYIVPGTGDPDGSIPSAWFSGTDKASLHEFLRQDLDLLVVSL 218

Query: 208 ALTEETHHMINKDVMTALGKEG-VIINVGRGALIDEKELVHFLVRGSL 254
            LT  T H++  +    L K    + N+ RG+L+D   LV  L  G +
Sbjct: 219 PLTPATKHLLGAEEFEILAKRKTFVSNIARGSLVDTDALVAALESGQI 266

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score = 80.3 bits (198), Expect = 3e-17
 Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 19/197 (9%)

Query: 57  PSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLV 116
           P+ +T++ +     LE+++ +  G DH+DL      G+ V       +E     VV +  
Sbjct: 108 PAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTV-------AEVTGSNVVSVAE 160

Query: 117 DVLRRVSSIDR-F------VRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVP 169
           D L R+  + R F      V +G W   G       L GK VG VG G IG  + +RL P
Sbjct: 161 DELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKP 220

Query: 170 FGCSIAYTSRKKKPG-----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTA 224
           F C++ Y  R K            F  ++  +    DV+++   LTE+T  M NK+ +  
Sbjct: 221 FNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAK 280

Query: 225 LGKEGVIINVGRGALID 241
           + K  +I+N  RGA++D
Sbjct: 281 MKKGVLIVNNARGAIMD 297

Length = 386

>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional

 Score = 78.4 bits (193), Expect = 1e-16
 Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 28/191 (14%)

Query: 78  TAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVR--NGLWP 135
           TAG D  DL   ++  I+++N  +   E  A+Y V + + ++RR   I+R V+  +  W 
Sbjct: 77  TAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTW- 135

Query: 136 DHGAYPLGST-LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYAN-- 192
                 + S  +    V I+G G IG+  AK    FG +I           +Y  Y N  
Sbjct: 136 ---QAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATI----------TAYDAYPNKD 182

Query: 193 ---------VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEK 243
                    V     D+D++ +     +E++H+ +K +   + K  +++N  RGA+I+  
Sbjct: 183 LDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTP 242

Query: 244 ELVHFLVRGSL 254
           +L+  +  G+L
Sbjct: 243 DLIAAVNDGTL 253

Length = 330

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 75.5 bits (186), Expect = 1e-15
 Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 9/156 (5%)

Query: 108 ADYVVGLLVDVLRRVSSIDRFVRNGLWPDH--GAYPLG-----STLGGKRVGIVGLGSIG 160
           A++ + L++  +RR+  +    R   W     G  PL      +TL G RV I G GSIG
Sbjct: 96  AEHTLALILAAVRRLDEMREAQREHRWAGELGGLQPLRPAGRLTTLLGARVLIWGFGSIG 155

Query: 161 SEVAKRLVPFGCSIAYTSRKKKPGVSYPFYA--NVSGLAADSDVLIVCCALTEETHHMIN 218
             +A  L   G  +   +R       +P  A   +  L  ++DVL++    T  T H ++
Sbjct: 156 QRLAPLLTALGARVTGVARSAGERAGFPVVAEDELPELLPETDVLVMILPATPSTAHALD 215

Query: 219 KDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
            +V+ AL K   ++NVGRGA +DE  LV  L  G L
Sbjct: 216 AEVLAALPKHAWVVNVGRGATVDEDALVAALESGRL 251

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score = 73.4 bits (181), Expect = 5e-15
 Identities = 49/179 (27%), Positives = 87/179 (48%), Gaps = 9/179 (5%)

Query: 80  GIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPD--H 137
           G + VDL    +RGI V NA  + +   A+ V+G ++ + RR+   +     G+W     
Sbjct: 74  GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIIMLARRLPDRNAAAHRGIWNKSAT 133

Query: 138 GAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA-YTSRKKKP-GVSYPFYANVSG 195
           G++     + GK +GI+G G IGS+++      G  +  Y   +K P G +    +++  
Sbjct: 134 GSH----EVRGKTLGIIGYGHIGSQLSVLAEALGMRVIFYDIAEKLPLGNARQ-VSSLEE 188

Query: 196 LAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
           L A++D + +    T  T +MI  + +  + K  ++IN  RG ++D   L   L  G L
Sbjct: 189 LLAEADFVTLHVPATPSTKNMIGAEEIAQMKKGAILINASRGTVVDIDALAEALRSGHL 247

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 49/205 (23%), Positives = 90/205 (43%), Gaps = 14/205 (6%)

Query: 59  PLTSDTLSLLPALEI--VVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLV 116
           PL+     LL  L I  +   +AG D  DL+   +  ++++N  +   E  A++ V   +
Sbjct: 56  PLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAI 115

Query: 117 DVLRRVSSIDRFVR--NGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVP-FGCS 173
           +++R  + I   VR  +  W       L  ++   +V ++G G IG  VAK     +G  
Sbjct: 116 NLVRHFNQIQTKVREHDFRW---EPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSD 172

Query: 174 IA----YTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEG 229
           +     + + K    V Y     +      +D++ +    T+  H++ N D+     K  
Sbjct: 173 VVAYDPFPNAKAATYVDYK--DTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGA 230

Query: 230 VIINVGRGALIDEKELVHFLVRGSL 254
           V +N  RG+L+D K L+  L  G +
Sbjct: 231 VFVNCARGSLVDTKALLDALDNGLI 255

Length = 332

>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 28/190 (14%)

Query: 78  TAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDH 137
           T G DH+DL      GI  ++A    +    DYV+G L+     ++  +           
Sbjct: 66  TIGTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLL----TLAERE----------- 110

Query: 138 GAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFG--CSIAYTSRKKKPGVSYPFYANVSG 195
                G  L  +  G+VG G +G  + + L   G    +    R++  G     + ++  
Sbjct: 111 -----GVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAEGDGD--FVSLER 163

Query: 196 LAADSDVLIVCCALTEE----THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVR 251
           +  + DV+ +   LT+E    T H++++  + +L     +IN  RGA++D + L   L+ 
Sbjct: 164 ILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLS 223

Query: 252 GSLVELVLMC 261
           G  ++ VL  
Sbjct: 224 GEDLDAVLDV 233

Length = 381

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 61.9 bits (150), Expect = 5e-11
 Identities = 48/222 (21%), Positives = 86/222 (38%), Gaps = 20/222 (9%)

Query: 42  LSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGI--DHVDLQEC-RRRGILVTN 98
           L++   S+  +L +   PLT+   +L+  L   +  T  I  DH DL E   R G+    
Sbjct: 58  LAKALWSLDVVLKV-KEPLTNAEYALIQKLGDRLLFTYTIGADHRDLTEALARAGLTAIA 116

Query: 99  AGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGS 158
                        +G     ++    I RF+        G  P    + GK V +VG G 
Sbjct: 117 VEGVELPLLTSNSIGAGELSVQF---IARFLEVQQPGRLGGAP---DVAGKTVVVVGAGV 170

Query: 159 IGSEVAKRLVPFGCSIAYTSRK-------KKPGVSYPFYANVSGLAADSDVLIVCCALTE 211
           +G E A+ L   G  +  T          ++ G        +    A++DV++    L  
Sbjct: 171 VGKEAAQMLRGLGAQVLITDINVEALEQLEELGGK--NVEELEEALAEADVIVTTTLLPG 228

Query: 212 ETHHMIN-KDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
           +   ++  ++++  +    VI+NV  GA+   + L   L+  
Sbjct: 229 KRAGILVPEELVEQMKPGSVIVNVAVGAVGCVQALHTQLLEE 270

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 45/182 (24%), Positives = 70/182 (38%), Gaps = 37/182 (20%)

Query: 84  VDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLG 143
           VD+   R  GI VT   +   E   +YV+  L+ +L           +G           
Sbjct: 86  VDIAAARENGITVTGIRDYGDEGVVEYVISELIRLL-----------HGFGG-KQWKEEP 133

Query: 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP-----GVSYPFYANVSGLAA 198
             L G +VGI+GLG+ G  +A  L  FG  + Y SR +KP     G+    Y  ++ L  
Sbjct: 134 RELTGLKVGIIGLGTTGQMIADALSFFGADVYYYSRTRKPDAEAKGI---RYLPLNELLK 190

Query: 199 DSDVLIVCCALTEETHHMINKDVMT-------ALGKEGVIINVGRGALIDEKELVHFLVR 251
             DV+  C          + K+V+         LG   ++ N   G   + + L  +L  
Sbjct: 191 TVDVICTC----------LPKNVILLGEEEFELLGDGKILFNTSLGPSFEVEALKKWLKA 240

Query: 252 GS 253
             
Sbjct: 241 SG 242

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 7/209 (3%)

Query: 51  AILCLGPSPLTSDTLSLLPALEI--VVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGA 108
           A++  G      + L +     I  V   T G +H+DL+  +  G  +    +      A
Sbjct: 47  AVIVRGNCFADKENLEIYKEYGIKYVFTRTVGFNHIDLEAAKELGFKMARVPSYSPNAIA 106

Query: 109 DYVVGLLVDVLRRVS-SIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRL 167
           +    L + + R  + +  R        D   +     +    VGI+G G IG   AK  
Sbjct: 107 ELAFTLAMTLSRHTAYTASRTANKNFKVD--PFMFSKEIRNSTVGIIGTGRIGLTAAKLF 164

Query: 168 VPFGCS-IAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCA-LTEETHHMINKDVMTAL 225
              G   I Y             + ++  L   SD++ +    +  +   +INK+ ++ +
Sbjct: 165 KGLGAKVIGYDIYPSDAAKDVVTFVSLDELLKKSDIISLHVPYIKGKNDKLINKEFISKM 224

Query: 226 GKEGVIINVGRGALIDEKELVHFLVRGSL 254
               ++IN  RG L DE+ ++  L  G L
Sbjct: 225 KDGAILINTARGELQDEEAILEALESGKL 253

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|185366 PRK15469, ghrA, bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

 Score = 52.5 bits (126), Expect = 6e-08
 Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 3/107 (2%)

Query: 151 VGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK--PGV-SYPFYANVSGLAADSDVLIVCC 207
           +GI+G G +GS+VA+ L  +G  +   SR +K  PGV S+     +S   + + VLI   
Sbjct: 139 IGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLL 198

Query: 208 ALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
             T ET  +IN+ ++  L     ++N+ RG  + E +L+  L  G +
Sbjct: 199 PNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKV 245

Length = 312

>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 59/196 (30%), Positives = 85/196 (43%), Gaps = 43/196 (21%)

Query: 80  GIDHVDLQECRRRGILVTNA--GNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDH 137
           G + VDL    +RGI V NA   N  S   A+ V+G ++ +LR +   +     G W + 
Sbjct: 85  GTNQVDLDAAAKRGIPVFNAPFSNTRSV--AELVIGEIILLLRGIPEKNAKAHRGGW-NK 141

Query: 138 GAYPLGS-TLGGKRVGIVGLGSIGSEV---AKRLVPFGCSIAYTSRKKKPGVSYPFY--- 190
            A   GS  + GK +GIVG G IG+++   A+ L                G+   FY   
Sbjct: 142 SA--AGSFEVRGKTLGIVGYGHIGTQLSVLAESL----------------GMRVYFYDIE 183

Query: 191 -----------ANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVI-INVGRGA 238
                       ++  L A SDV+ +    T  T +MI  + + AL K G I IN  RG 
Sbjct: 184 DKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEEL-ALMKPGAILINASRGT 242

Query: 239 LIDEKELVHFLVRGSL 254
           ++D   L   L  G L
Sbjct: 243 VVDIDALADALKSGHL 258

Length = 409

>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 24/194 (12%)

Query: 70  ALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFV 129
            ++ V  +TAG DHVD    ++ GI  + A    +    +YV   L+ +  R    D F 
Sbjct: 58  PIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAER----DGF- 112

Query: 130 RNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF 189
                          +L  + VGIVG+G++G  +  RL   G         +        
Sbjct: 113 ---------------SLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGD 157

Query: 190 YANVSGLAADSDVLIVCCALTEE----THHMINKDVMTALGKEGVIINVGRGALIDEKEL 245
           + ++  L  ++D+L     L ++    T H+ ++ ++ +L    ++IN  RGA++D   L
Sbjct: 158 FRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTAL 217

Query: 246 VHFLVRGSLVELVL 259
           +  L  G  + +VL
Sbjct: 218 LTCLNEGQKLSVVL 231

Length = 378

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	286
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
PLN03139	386	formate dehydrogenase; Provisional	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PLN02928	347	oxidoreductase family protein	100.0
PLN02306	386	hydroxypyruvate reductase	100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	100.0
PRK06436	303	glycerate dehydrogenase; Provisional	100.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	100.0
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	100.0
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	100.0
KOG0067	435	consensus Transcription factor CtBP [Transcription	99.94
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.83
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.83
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.67
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.66
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	99.66
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.6
PLN02494	477	adenosylhomocysteinase	99.59
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	99.51
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.5
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.49
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.47
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.46
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.45
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.45
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.39
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.39
KOG0409	327	consensus Predicted dehydrogenase [General functio	99.38
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.35
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	99.34
PLN02858	1378	fructose-bisphosphate aldolase	99.32
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.31
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	99.29
PLN02858	1378	fructose-bisphosphate aldolase	99.26
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.26
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.26
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.17
PLN02712	667	arogenate dehydrogenase	99.15
PLN02256	304	arogenate dehydrogenase	99.07
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.03
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.03
PRK08655	437	prephenate dehydrogenase; Provisional	98.96
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.95
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	98.92
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	98.92
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.92
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.9
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	98.9
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	98.9
PRK08818	370	prephenate dehydrogenase; Provisional	98.89
PLN02712	667	arogenate dehydrogenase	98.89
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.88
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.87
PLN02688	266	pyrroline-5-carboxylate reductase	98.87
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	98.84
PRK05225	487	ketol-acid reductoisomerase; Validated	98.84
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.81
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.81
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.81
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.8
PRK07417	279	arogenate dehydrogenase; Reviewed	98.79
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	98.79
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.78
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	98.77
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	98.77
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.76
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.75
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.75
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.74
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.72
PRK06545	359	prephenate dehydrogenase; Validated	98.72
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	98.72
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	98.72
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.71
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.68
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.68
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.67
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.66
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.66
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.64
PRK08507	275	prephenate dehydrogenase; Validated	98.63
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.62
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	98.62
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.62
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.61
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.6
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	98.6
PRK07680	273	late competence protein ComER; Validated	98.6
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.6
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.6
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.59
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.57
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.56
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.54
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.53
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.51
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.5
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.5
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.48
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	98.48
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	98.44
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.42
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.41
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	98.39
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.38
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	98.37
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	98.37
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	98.37
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	98.36
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	98.33
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	98.33
PTZ00431	260	pyrroline carboxylate reductase; Provisional	98.31
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	98.28
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.27
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	98.27
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.26
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	98.25
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	98.25
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.25
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	98.24
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.23
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.23
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.23
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.22
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.22
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	98.21
PLN00203	519	glutamyl-tRNA reductase	98.21
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.2
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	98.2
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	98.19
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	98.18
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.16
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	98.16
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	98.15
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.13
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	98.13
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.12
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	98.1
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.09
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.07
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	98.07
PRK06141	314	ornithine cyclodeaminase; Validated	98.05
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.04
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.03
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.03
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.02
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.0
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	98.0
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.99
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.99
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.99
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.99
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	97.98
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.98
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.96
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.95
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.95
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.95
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.95
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.93
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.93
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.92
PLN02353	473	probable UDP-glucose 6-dehydrogenase	97.92
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.91
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.9
PRK14982	340	acyl-ACP reductase; Provisional	97.88
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.86
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	97.85
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.85
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.84
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.82
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.81
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.8
PRK07340	304	ornithine cyclodeaminase; Validated	97.8
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	97.79
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.79
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.78
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.77
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.75
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.68
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	97.68
PRK08618	325	ornithine cyclodeaminase; Validated	97.66
PRK06823	315	ornithine cyclodeaminase; Validated	97.63
PRK11730	715	fadB multifunctional fatty acid oxidation complex	97.62
PTZ00117	319	malate dehydrogenase; Provisional	97.6
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.6
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.6
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.6
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.58
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.56
PRK06444	197	prephenate dehydrogenase; Provisional	97.55
PRK06407	301	ornithine cyclodeaminase; Provisional	97.54
PRK06046	326	alanine dehydrogenase; Validated	97.54
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.53
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	97.51
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	97.5
PRK06199	379	ornithine cyclodeaminase; Validated	97.5
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.47
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.47
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	97.46
PRK08291	330	ectoine utilization protein EutC; Validated	97.46
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	97.46
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	97.45
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.43
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.39
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.38
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.37
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.37
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	97.36
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	97.36
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	97.35
PRK07589	346	ornithine cyclodeaminase; Validated	97.34
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.31
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.31
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.3
PLN02477	410	glutamate dehydrogenase	97.29
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.29
PRK06223	307	malate dehydrogenase; Reviewed	97.28
PRK13303	265	L-aspartate dehydrogenase; Provisional	97.26
PTZ00082	321	L-lactate dehydrogenase; Provisional	97.24
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.23
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.22
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	97.14
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.12
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.1
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	97.08
PRK00048	257	dihydrodipicolinate reductase; Provisional	97.08
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	97.05
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.04
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	97.0
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	97.0
PRK09414	445	glutamate dehydrogenase; Provisional	97.0
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.99
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	96.98
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.98
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	96.98
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	96.97
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.95
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	96.92
COG5322	351	Predicted dehydrogenase [General function predicti	96.92
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.87
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.85
PRK14031	444	glutamate dehydrogenase; Provisional	96.84
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	96.83
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	96.83
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.83
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	96.82
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	96.82
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	96.78
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.77
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.76
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.75
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.75
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.75
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	96.75
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	96.74
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	96.72
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.72
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.72
PRK01713	334	ornithine carbamoyltransferase; Provisional	96.69
PRK14030	445	glutamate dehydrogenase; Provisional	96.68
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	96.68
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	96.66
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.62
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.58
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	96.58
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	96.54
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	96.54
TIGR00036	266	dapB dihydrodipicolinate reductase.	96.5
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	96.49
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	96.48
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	96.46
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.46
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	96.44
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.43
PLN02527	306	aspartate carbamoyltransferase	96.43
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	96.42
PRK09496	453	trkA potassium transporter peripheral membrane com	96.41
PLN02353	473	probable UDP-glucose 6-dehydrogenase	96.4
PRK00779	304	ornithine carbamoyltransferase; Provisional	96.4
PRK11579	346	putative oxidoreductase; Provisional	96.39
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.39
PRK05086	312	malate dehydrogenase; Provisional	96.37
PRK02255	338	putrescine carbamoyltransferase; Provisional	96.34
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	96.34
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.32
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	96.29
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	96.28
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.28
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	96.23
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.23
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.19
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	96.15
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.15
PRK08223	287	hypothetical protein; Validated	96.13
PRK08328	231	hypothetical protein; Provisional	96.13
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	96.12
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.12
PLN02602	350	lactate dehydrogenase	96.12
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	96.11
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	96.09
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	96.08
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.07
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	96.07
PRK12862	763	malic enzyme; Reviewed	96.05
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.04
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	96.04
PRK10637	457	cysG siroheme synthase; Provisional	96.02
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.97
PRK06270	341	homoserine dehydrogenase; Provisional	95.97
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	95.92
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	95.89
PRK07411	390	hypothetical protein; Validated	95.88
PRK06153	393	hypothetical protein; Provisional	95.87
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.85
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	95.83
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.83
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.83
PRK15076	431	alpha-galactosidase; Provisional	95.8
PRK11891	429	aspartate carbamoyltransferase; Provisional	95.77
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	95.75
PRK10669	558	putative cation:proton antiport protein; Provision	95.75
PRK12861	764	malic enzyme; Reviewed	95.74
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	95.73
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	95.71
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.7
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	95.68
PRK02102	331	ornithine carbamoyltransferase; Validated	95.67
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	95.67
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	95.64
PLN02342	348	ornithine carbamoyltransferase	95.64
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.62
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.61
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.6
COG2910	211	Putative NADH-flavin reductase [General function p	95.58
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.54
PRK09496	453	trkA potassium transporter peripheral membrane com	95.51
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	95.49
PRK08300	302	acetaldehyde dehydrogenase; Validated	95.49
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	95.49
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	95.48
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.46
CHL00194	317	ycf39 Ycf39; Provisional	95.45
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.45
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	95.44
PRK07877	722	hypothetical protein; Provisional	95.43
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	95.42
PLN02383	344	aspartate semialdehyde dehydrogenase	95.37
PF05222	136	AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal	95.36
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.35
PRK14804	311	ornithine carbamoyltransferase; Provisional	95.35
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	95.35
PRK04284	332	ornithine carbamoyltransferase; Provisional	95.31
PRK06349	426	homoserine dehydrogenase; Provisional	95.3
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	95.28
PLN03209	576	translocon at the inner envelope of chloroplast su	95.26
COG2344	211	AT-rich DNA-binding protein [General function pred	95.23
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	95.2
PRK04148	134	hypothetical protein; Provisional	95.16
PRK07806	248	short chain dehydrogenase; Provisional	95.11
PRK08192	338	aspartate carbamoyltransferase; Provisional	95.1
PRK13529	563	malate dehydrogenase; Provisional	95.04
PLN02948	577	phosphoribosylaminoimidazole carboxylase	95.02
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	95.01
PRK05442	326	malate dehydrogenase; Provisional	94.98
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	94.98
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	94.98
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	94.97
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.95
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.95
PTZ00325	321	malate dehydrogenase; Provisional	94.95
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	94.93
PLN03129	581	NADP-dependent malic enzyme; Provisional	94.91
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	94.91
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	94.89
COG0281	432	SfcA Malic enzyme [Energy production and conversio	94.85
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.81
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	94.8
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.79
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	94.78
PLN00106	323	malate dehydrogenase	94.77
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	94.75
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	94.73
PRK15116	268	sulfur acceptor protein CsdL; Provisional	94.7
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	94.7
COG0673	342	MviM Predicted dehydrogenases and related proteins	94.66
PTZ00317	559	NADP-dependent malic enzyme; Provisional	94.6
PRK13376	525	pyrB bifunctional aspartate carbamoyltransferase c	94.59
PRK06392	326	homoserine dehydrogenase; Provisional	94.58
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.55
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	94.52
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	94.52
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	94.49
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	94.45
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.4
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	94.38
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	94.37
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	94.31
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	94.3
PLN02214	342	cinnamoyl-CoA reductase	94.28
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.28
PLN00112	444	malate dehydrogenase (NADP); Provisional	94.26
PRK14851	679	hypothetical protein; Provisional	94.21
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	94.19
KOG4230	935	consensus C1-tetrahydrofolate synthase [Coenzyme t	94.19
PLN02586	360	probable cinnamyl alcohol dehydrogenase	94.16
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	94.16
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	94.15
PRK10206	344	putative oxidoreductase; Provisional	94.12
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	94.11
PLN02427	386	UDP-apiose/xylose synthase	94.11
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	94.05
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	94.04
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	94.03
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	94.01
PLN02695	370	GDP-D-mannose-3',5'-epimerase	94.0
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	93.97
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	93.95
PRK07523	255	gluconate 5-dehydrogenase; Provisional	93.94
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	93.93
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	93.9
PRK06523	260	short chain dehydrogenase; Provisional	93.9
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	93.89
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	93.89
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	93.82
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	93.81
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	93.8
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	93.8
PRK05865	854	hypothetical protein; Provisional	93.79
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	93.72
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	93.72
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	93.69
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	93.54
PRK08628	258	short chain dehydrogenase; Provisional	93.53
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	93.52
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	93.52
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	93.5
PRK10537	393	voltage-gated potassium channel; Provisional	93.49
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	93.46
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	93.45
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	93.43
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.39
PLN02896	353	cinnamyl-alcohol dehydrogenase	93.37
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	93.34
PRK05884	223	short chain dehydrogenase; Provisional	93.33
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	93.26
PRK12937	245	short chain dehydrogenase; Provisional	93.25
PRK08374	336	homoserine dehydrogenase; Provisional	93.22
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	93.2
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.19
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	93.13
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	93.1
PRK08265	261	short chain dehydrogenase; Provisional	93.05
PRK06196	315	oxidoreductase; Provisional	93.01
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	93.0
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	92.95
PRK14852	989	hypothetical protein; Provisional	92.9
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	92.89
PRK08324	681	short chain dehydrogenase; Validated	92.88
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	92.81
PRK06398	258	aldose dehydrogenase; Validated	92.76
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	92.74
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.7
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	92.67
PRK08264	238	short chain dehydrogenase; Validated	92.67
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	92.65
KOG3007	333	consensus Mu-crystallin [Amino acid transport and	92.64
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	92.53
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	92.49
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	92.48
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	92.47
PRK08862	227	short chain dehydrogenase; Provisional	92.42
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	92.41
PRK12939	250	short chain dehydrogenase; Provisional	92.34
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	92.31
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	92.3
PLN02178	375	cinnamyl-alcohol dehydrogenase	92.29
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	92.26
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	92.23
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	92.22
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	92.21
PRK07825	273	short chain dehydrogenase; Provisional	92.2
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	92.18
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	92.03
PLN02514	357	cinnamyl-alcohol dehydrogenase	92.02
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	92.01
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	91.98

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=4.5e-63  Score=453.61  Aligned_cols=245  Identities=29%  Similarity=0.419  Sum_probs=227.6

Q ss_pred             hHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHH
Q 043239           39 HSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDV  118 (286)
Q Consensus        39 ~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~  118 (286)
                      ++.+.+.+.++|++++ +.+++++++++.+|+||+|++.++|+||||+++++++||.|+|+|+.|+.+||||+++++|++
T Consensus        36 ~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~  114 (324)
T COG0111          36 EEELLEALADADALIV-SVTPVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLAL  114 (324)
T ss_pred             hHHHHhhcccCcEEEE-ecCCCCHHHHhhCCCceEEEEccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHH
Confidence            4445566789999998 788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCC-CC---CcccccCHH
Q 043239          119 LRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP-GV---SYPFYANVS  194 (286)
Q Consensus       119 ~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~-~~---~~~~~~~l~  194 (286)
                      .|+++.++..+++|.|.+.  ...+.+|+|||+||||+|.||+.+|+++++|||+|.+||+...+ ..   +.....+|+
T Consensus       115 ~R~~~~~~~~~~~g~W~~~--~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld  192 (324)
T COG0111         115 ARRIPDADASQRRGEWDRK--AFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLD  192 (324)
T ss_pred             hcCchhhHHHHHcCCcccc--ccccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHH
Confidence            9999999999999999962  23577999999999999999999999999999999999994433 22   344567899


Q ss_pred             HhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCccc
Q 043239          195 GLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLH  274 (286)
Q Consensus       195 e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~  274 (286)
                      +++++||+|++|+|+|++|+++|+++.|.+||+|++|||+|||++||++||++||++|+|+||+||||+.||++.+++|+
T Consensus       193 ~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~  272 (324)
T COG0111         193 ELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLW  272 (324)
T ss_pred             HHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc--cccccccCC
Q 043239          275 WIM--LCCLHMLLW  286 (286)
Q Consensus       275 ~~~--~~tph~~~~  286 (286)
                      ..+  ++||||||+
T Consensus       273 ~~pnV~~TPHia~~  286 (324)
T COG0111         273 DLPNVILTPHIGGS  286 (324)
T ss_pred             cCCCeEECCccccc
Confidence            888  889999985

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=3.8e-62  Score=447.20  Aligned_cols=266  Identities=24%  Similarity=0.337  Sum_probs=232.8

Q ss_pred             CCCchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCe
Q 043239           15 GCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGI   94 (286)
Q Consensus        15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI   94 (286)
                      +...+.+++.+++..+. .  .+ .+.+.+.++++|+++++ ..++++++++++|+||+|++.|+|+||||+++|+++||
T Consensus        13 ~~~~~~l~~~~~~~~~~-~--~~-~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI   87 (311)
T PRK08410         13 DKDLSVFEEFGDFQIYP-T--TS-PEEVIERIKDANIIITN-KVVIDKEVLSQLPNLKLICITATGTNNVDIEYAKKKGI   87 (311)
T ss_pred             hhhHHHHhhCceEEEeC-C--CC-HHHHHHHhCCCCEEEEC-CCCCCHHHHhhCCCCeEEEEcccccccccHHHHHhCCC
Confidence            44556676666555443 1  11 33345567899999885 56899999999999999999999999999999999999


Q ss_pred             EEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCC----CCcccCCCCEEEEEcCChHHHHHHHHhccC
Q 043239           95 LVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAY----PLGSTLGGKRVGIVGLGSIGSEVAKRLVPF  170 (286)
Q Consensus        95 ~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~----~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~  170 (286)
                      .|+|+|++++.+||||++++||+++|++..+++.+++|.|.....+    ..+++|+|+|+||||+|+||+.+|+++++|
T Consensus        88 ~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~f  167 (311)
T PRK08410         88 AVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAF  167 (311)
T ss_pred             EEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999753211    124689999999999999999999999999


Q ss_pred             CCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 043239          171 GCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLV  250 (286)
Q Consensus       171 g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~  250 (286)
                      ||+|++|+|+...........++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||+
T Consensus       168 gm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~  247 (311)
T PRK08410        168 GAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALD  247 (311)
T ss_pred             CCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence            99999999975433222235699999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCeeEEEeeccCCCCCCcCCcccc-----cccccccccCC
Q 043239          251 RGSLVELVLMCLRTSLMCQRSCLHW-----IMLCCLHMLLW  286 (286)
Q Consensus       251 ~~~i~ga~lDv~~~e~~~~~~~l~~-----~~~~tph~~~~  286 (286)
                      +|+|+ |+||||+.||++.+++|+.     +.++|||+||+
T Consensus       248 ~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~  287 (311)
T PRK08410        248 EKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWA  287 (311)
T ss_pred             cCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccC
Confidence            99999 9999999999999998884     56999999986

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=5.8e-62  Score=445.90  Aligned_cols=273  Identities=30%  Similarity=0.464  Sum_probs=241.1

Q ss_pred             cCCCCCCchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHh
Q 043239           11 RGAPGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECR   90 (286)
Q Consensus        11 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~   90 (286)
                      +.+++...+++.+.|++..+........  .+.+..+++|++++....++++++++++|+||+|++.|+|+||||+++|+
T Consensus         9 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G~D~vDl~aa~   86 (324)
T COG1052           9 RKLPPEVLERLKEKFEVERYEDDLTPDT--ELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNVDLEAAK   86 (324)
T ss_pred             CcCCHHHHHHhhccEEEEEeccCCccch--HHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccccCcccHHHHH
Confidence            3466667888888888766653322222  45566789999999777899999999999999999999999999999999


Q ss_pred             hcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCC--CCCCcccCCCCEEEEEcCChHHHHHHHHhc
Q 043239           91 RRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHG--AYPLGSTLGGKRVGIVGLGSIGSEVAKRLV  168 (286)
Q Consensus        91 ~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~--~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~  168 (286)
                      ++||.|+|+|++++.+||||++++||++.|++.++++++++|.|...+  ....+.+++|||+||||+|+||+++|++++
T Consensus        87 ~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~  166 (324)
T COG1052          87 ERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLK  166 (324)
T ss_pred             HCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999998753  234688999999999999999999999999


Q ss_pred             cCCCEEEEECCCCCCC----CCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHH
Q 043239          169 PFGCSIAYTSRKKKPG----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKE  244 (286)
Q Consensus       169 ~~g~~V~~~~r~~~~~----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~a  244 (286)
                      +|||+|.+|+|++.+.    .++. +.+++|++++||+|++|||++++|+++|+++.|++||+|++|||+|||++||++|
T Consensus       167 ~Fgm~v~y~~~~~~~~~~~~~~~~-y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~A  245 (324)
T COG1052         167 GFGMKVLYYDRSPNPEAEKELGAR-YVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQA  245 (324)
T ss_pred             cCCCEEEEECCCCChHHHhhcCce-eccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHH
Confidence            9999999999987521    1233 4459999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCeeEEEeeccCCCCCCcCCccc--cc---ccccccccCC
Q 043239          245 LVHFLVRGSLVELVLMCLRTSLMCQRSCLH--WI---MLCCLHMLLW  286 (286)
Q Consensus       245 l~~al~~~~i~ga~lDv~~~e~~~~~~~l~--~~---~~~tph~~~~  286 (286)
                      |++||++|+|.||+||||+.||...+.++.  .+   .++|||||++
T Consensus       246 Li~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~a  292 (324)
T COG1052         246 LIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASA  292 (324)
T ss_pred             HHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccc
Confidence            999999999999999999999986555555  34   6999999985

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=3.3e-61  Score=442.03  Aligned_cols=268  Identities=24%  Similarity=0.332  Sum_probs=232.4

Q ss_pred             CCCCCchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhc
Q 043239           13 APGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRR   92 (286)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~   92 (286)
                      +.+...+.+++.++.+.+... .  ..+.+.+.+.++|+++++ ..++++++++++|+||||+++|+|+||||+++++++
T Consensus        13 ~~~~~~~~l~~~~~~~~~~~~-~--~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~   88 (317)
T PRK06487         13 LGDLDLSPLEQAFDELQLHDA-T--TPEQVAERLRGAQVAISN-KVALDAAALAAAPQLKLILVAATGTNNVDLAAARER   88 (317)
T ss_pred             ccccchhHHHhhCCeEEEecC-C--CHHHHHHHhCCCeEEEEe-CCCCCHHHHhhCCCCeEEEEcCccccccCHHHHHHC
Confidence            334455667666543333311 1  234455667899998875 467999999999999999999999999999999999


Q ss_pred             CeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCC----CCcccCCCCEEEEEcCChHHHHHHHHhc
Q 043239           93 GILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAY----PLGSTLGGKRVGIVGLGSIGSEVAKRLV  168 (286)
Q Consensus        93 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~----~~~~~l~g~~vgIiG~G~iG~~~A~~l~  168 (286)
                      ||.|+|+|++++.+||||++++||+++|++..+++.+++|.|.+...+    ..+.+|.|+++||||+|+||+.+|++++
T Consensus        89 gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~  168 (317)
T PRK06487         89 GITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAE  168 (317)
T ss_pred             CCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999754211    1346899999999999999999999999


Q ss_pred             cCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 043239          169 PFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHF  248 (286)
Q Consensus       169 ~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~a  248 (286)
                      +|||+|.+|+++.... . ....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++|
T Consensus       169 ~fgm~V~~~~~~~~~~-~-~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~A  246 (317)
T PRK06487        169 AFGMRVLIGQLPGRPA-R-PDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADA  246 (317)
T ss_pred             hCCCEEEEECCCCCcc-c-ccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHH
Confidence            9999999999864322 1 2245899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCeeEEEeeccCCCCCCcCCccc----ccccccccccCC
Q 043239          249 LVRGSLVELVLMCLRTSLMCQRSCLH----WIMLCCLHMLLW  286 (286)
Q Consensus       249 l~~~~i~ga~lDv~~~e~~~~~~~l~----~~~~~tph~~~~  286 (286)
                      |++|+|+||+||||+.||++.+++|+    .+.++|||+||+
T Consensus       247 L~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~  288 (317)
T PRK06487        247 LRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWG  288 (317)
T ss_pred             HHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccC
Confidence            99999999999999999999888887    456999999985

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=1.9e-61  Score=444.02  Aligned_cols=270  Identities=24%  Similarity=0.361  Sum_probs=234.1

Q ss_pred             CCCchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCe
Q 043239           15 GCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGI   94 (286)
Q Consensus        15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI   94 (286)
                      +...+.|.+.+++..+....+.+ .+.+.+.+.++|+++++ ..++++++++++|+||+|++.|+|+||||+++|+++||
T Consensus        13 ~~~~~~l~~~~~v~~~~~~~~~~-~~~~~~~~~~ad~li~~-~~~~~~~~l~~~p~Lk~I~~~g~G~d~id~~~~~~~gI   90 (323)
T PRK15409         13 DDLLQRLEEHFTVTQVANLSPET-VEQHAAAFAEAEGLLGS-GEKVDAALLEKMPKLRAASTISVGYDNFDVDALTARKI   90 (323)
T ss_pred             HHHHHHHHhcCcEEEcCCCCCCC-HHHHHHHhcCCeEEEEc-CCCCCHHHHhhCCCCeEEEECceecccccHHHHHHCCC
Confidence            44556677667665443111222 33345567899999875 45799999999999999999999999999999999999


Q ss_pred             EEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCC-CCCCcccCCCCEEEEEcCChHHHHHHHHhc-cCCC
Q 043239           95 LVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHG-AYPLGSTLGGKRVGIVGLGSIGSEVAKRLV-PFGC  172 (286)
Q Consensus        95 ~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~-~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~-~~g~  172 (286)
                      .|+|+|++++.+||||++++||+++|++..+++.+++|.|.... ....+.+|+|+++||||+|+||+.+|++++ +|||
T Consensus        91 ~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~fgm  170 (323)
T PRK15409         91 LLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNM  170 (323)
T ss_pred             EEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999997431 122478999999999999999999999998 9999


Q ss_pred             EEEEECCCCCCCC---CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 043239          173 SIAYTSRKKKPGV---SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFL  249 (286)
Q Consensus       173 ~V~~~~r~~~~~~---~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al  249 (286)
                      +|.+|+|......   ....+.++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||
T Consensus       171 ~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL  250 (323)
T PRK15409        171 PILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAAL  250 (323)
T ss_pred             EEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHH
Confidence            9999998754321   1123569999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCeeEEEeeccCCCCCCcCCcccccc--cccccccCC
Q 043239          250 VRGSLVELVLMCLRTSLMCQRSCLHWIM--LCCLHMLLW  286 (286)
Q Consensus       250 ~~~~i~ga~lDv~~~e~~~~~~~l~~~~--~~tph~~~~  286 (286)
                      ++|+|+||+||||+.||++.+++|+..+  ++|||+||+
T Consensus       251 ~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~  289 (323)
T PRK15409        251 QKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSA  289 (323)
T ss_pred             HcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCC
Confidence            9999999999999999998888887665  999999985

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=4.2e-60  Score=434.08  Aligned_cols=245  Identities=22%  Similarity=0.348  Sum_probs=221.4

Q ss_pred             HHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHH
Q 043239           40 SFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVL  119 (286)
Q Consensus        40 ~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~  119 (286)
                      +...+.++++|++++. ..++++++++++|+||||++.++|+||||++++.++||.|+|+|++++.+||||++++||++.
T Consensus        36 ~~~~~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~~  114 (314)
T PRK06932         36 EQTIERAKDADIVITS-KVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALK  114 (314)
T ss_pred             HHHHHHhCCCcEEEEe-CCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHHH
Confidence            3345567899998874 567999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcchHHHHHHHcCCCCCCCCC----CCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHH
Q 043239          120 RRVSSIDRFVRNGLWPDHGAY----PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSG  195 (286)
Q Consensus       120 R~~~~~~~~~~~~~w~~~~~~----~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e  195 (286)
                      |+++.+++.+++|.|.....+    ..+.+|+|+++||||+|.||+.+|+++++|||+|.+|+++...... ..+.++++
T Consensus       115 R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~-~~~~~l~e  193 (314)
T PRK06932        115 HSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCR-EGYTPFEE  193 (314)
T ss_pred             hChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccc-cccCCHHH
Confidence            999999999999999753211    1356899999999999999999999999999999999986432211 12568999


Q ss_pred             hhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCccc-
Q 043239          196 LAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLH-  274 (286)
Q Consensus       196 ~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~-  274 (286)
                      ++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|+|+||+||||+.||++.+++++ 
T Consensus       194 ll~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~  273 (314)
T PRK06932        194 VLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQ  273 (314)
T ss_pred             HHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhhH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999886 


Q ss_pred             -----ccccccccccCC
Q 043239          275 -----WIMLCCLHMLLW  286 (286)
Q Consensus       275 -----~~~~~tph~~~~  286 (286)
                           .+.++|||+||+
T Consensus       274 ~~~~~pnvilTPHia~~  290 (314)
T PRK06932        274 AAKRLPNLLITPHIAWA  290 (314)
T ss_pred             hhcCCCCEEECCccccC
Confidence                 566999999986

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=2.3e-59  Score=437.28  Aligned_cols=268  Identities=22%  Similarity=0.296  Sum_probs=233.9

Q ss_pred             CchhhhCC-CcEEecCCCCCCCchHHHHhccCCceEEEEeC--CCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcC
Q 043239           17 FNPPLSER-FTLLDPLLHSADSTHSFLSRHASSVRAILCLG--PSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRG   93 (286)
Q Consensus        17 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~--~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~g   93 (286)
                      +.+.|++. ++++... ..+ ..++.+.+.+.++|++++..  ..++++++++++|+||||++.|+|+||||+++|+++|
T Consensus        67 ~~~~l~~~g~~~v~~~-~~~-~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~g  144 (386)
T PLN03139         67 IRDWLESQGHQYIVTD-DKE-GPDCELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAG  144 (386)
T ss_pred             HHHHHHhcCCeEEEeC-CCC-CCHHHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCC
Confidence            34556655 4554443 222 22444556678999998853  2469999999999999999999999999999999999


Q ss_pred             eEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCE
Q 043239           94 ILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS  173 (286)
Q Consensus        94 I~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~  173 (286)
                      |.|+|++++++.+||||++++||++.|++..+++.+++|.|........+.+|.|++|||||+|+||+.+|++|++||++
T Consensus       145 I~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~  224 (386)
T PLN03139        145 LTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCN  224 (386)
T ss_pred             eEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCE
Confidence            99999999999999999999999999999999999999999753222356899999999999999999999999999999


Q ss_pred             EEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 043239          174 IAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHF  248 (286)
Q Consensus       174 V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~a  248 (286)
                      |.+||++.....     +.....++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++|+++|+++
T Consensus       225 V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~A  304 (386)
T PLN03139        225 LLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADA  304 (386)
T ss_pred             EEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHH
Confidence            999998753321     233456999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCeeEEEeeccCCCCCCcCCcccccc--cccccccCC
Q 043239          249 LVRGSLVELVLMCLRTSLMCQRSCLHWIM--LCCLHMLLW  286 (286)
Q Consensus       249 l~~~~i~ga~lDv~~~e~~~~~~~l~~~~--~~tph~~~~  286 (286)
                      |++|+|+||+||||++||++.+++|+.++  ++|||+||+
T Consensus       305 L~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~  344 (386)
T PLN03139        305 CSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGT  344 (386)
T ss_pred             HHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEccccccc
Confidence            99999999999999999999999888776  999999985

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=2.3e-59  Score=432.55  Aligned_cols=271  Identities=30%  Similarity=0.437  Sum_probs=234.7

Q ss_pred             CCCCchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcC
Q 043239           14 PGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRG   93 (286)
Q Consensus        14 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~g   93 (286)
                      ++...+.+.+.+++..+.+..+.+ .+.+.+.++++|+++++...++++++++++|+||||+++|+|+||||+++++++|
T Consensus        12 ~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~g   90 (333)
T PRK13243         12 PENGIEMLEEHFEVEVWEDEREIP-REVLLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVGYDNIDVEEATRRG   90 (333)
T ss_pred             CHHHHHHHhcCceEEEecCCCCCC-HHHHHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCccccccCHHHHHHcC
Confidence            344556677666654443111122 3444566789999998766689999999999999999999999999999999999


Q ss_pred             eEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCC-----CCCcccCCCCEEEEEcCChHHHHHHHHhc
Q 043239           94 ILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGA-----YPLGSTLGGKRVGIVGLGSIGSEVAKRLV  168 (286)
Q Consensus        94 I~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~-----~~~~~~l~g~~vgIiG~G~iG~~~A~~l~  168 (286)
                      |.|+|+|++++.+||||++++||++.|+++.+++.+++|.|.+...     ...+.+|.|++|||||+|.||+.+|++|+
T Consensus        91 I~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~l~  170 (333)
T PRK13243         91 IYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAK  170 (333)
T ss_pred             CEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999974311     12468999999999999999999999999


Q ss_pred             cCCCEEEEECCCCCCCC---CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHH
Q 043239          169 PFGCSIAYTSRKKKPGV---SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKEL  245 (286)
Q Consensus       169 ~~g~~V~~~~r~~~~~~---~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al  245 (286)
                      +||++|.+|+|+.....   ......++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++|+++|
T Consensus       171 ~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL  250 (333)
T PRK13243        171 GFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKAL  250 (333)
T ss_pred             HCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHH
Confidence            99999999999765422   111346899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCeeEEEeeccCCCCCCcCCcccccc--cccccccCC
Q 043239          246 VHFLVRGSLVELVLMCLRTSLMCQRSCLHWIM--LCCLHMLLW  286 (286)
Q Consensus       246 ~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~~--~~tph~~~~  286 (286)
                      +++|++|+|+||+||||+.||++ +++|+.++  ++|||+||+
T Consensus       251 ~~aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~nvilTPHia~~  292 (333)
T PRK13243        251 VKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAPHIGSA  292 (333)
T ss_pred             HHHHHcCCeEEEEeccCCCCCCC-CchhhcCCCEEECCcCCcC
Confidence            99999999999999999999987 77787665  999999986

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=7.1e-59  Score=434.16  Aligned_cols=265  Identities=25%  Similarity=0.375  Sum_probs=231.9

Q ss_pred             hhhCC-CcEEecCCCCCCCchHHHHhccCCceEEEEeC--CCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEE
Q 043239           20 PLSER-FTLLDPLLHSADSTHSFLSRHASSVRAILCLG--PSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILV   96 (286)
Q Consensus        20 ~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~--~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v   96 (286)
                      .+++. ++++... ..+ ..++.+.+.+.++|+++++.  ..++++++++++|+||||+++|+|+||||+++++++||.|
T Consensus        63 ~l~~~g~e~~~~~-~~~-~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V  140 (385)
T PRK07574         63 FLEERGHELVVTS-DKD-GPDSDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITV  140 (385)
T ss_pred             HHHhcCcEEEEeC-CCC-CCHHHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEE
Confidence            45554 4544433 222 12344556678999999853  3579999999999999999999999999999999999999


Q ss_pred             EecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEE
Q 043239           97 TNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAY  176 (286)
Q Consensus        97 ~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~  176 (286)
                      +|++++++.+||||++++||++.|++..+++.+++|.|........+.+|.|++|||||+|+||+.+|++|++||++|.+
T Consensus       141 ~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~  220 (385)
T PRK07574        141 AEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHY  220 (385)
T ss_pred             EcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            99999999999999999999999999999999999999854222346789999999999999999999999999999999


Q ss_pred             ECCCCCCC-----CCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239          177 TSRKKKPG-----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVR  251 (286)
Q Consensus       177 ~~r~~~~~-----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~  251 (286)
                      |||+....     .+.....+++|++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++|++||++||++
T Consensus       221 ~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s  300 (385)
T PRK07574        221 TDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALES  300 (385)
T ss_pred             ECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh
Confidence            99976321     1333457999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEeeccCCCCCCcCCcccccc--cccccccCC
Q 043239          252 GSLVELVLMCLRTSLMCQRSCLHWIM--LCCLHMLLW  286 (286)
Q Consensus       252 ~~i~ga~lDv~~~e~~~~~~~l~~~~--~~tph~~~~  286 (286)
                      |+|+||+||||+.||++.+++|+.++  ++|||+||+
T Consensus       301 G~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~  337 (385)
T PRK07574        301 GHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGT  337 (385)
T ss_pred             CCccEEEEecCCCCCCCCCChHHhCCCeEECCccccC
Confidence            99999999999999999999888766  999999985

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-58  Score=437.37  Aligned_cols=268  Identities=21%  Similarity=0.242  Sum_probs=232.1

Q ss_pred             CCCCchhhhCC-C-cEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhh
Q 043239           14 PGCFNPPLSER-F-TLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRR   91 (286)
Q Consensus        14 ~~~~~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~   91 (286)
                      .+...+.+.+. + ++..+. . .. .++.+.+.++++|++++++..++++++++++|+||||++.|+|+||||+++|++
T Consensus        20 ~~~~~~~l~~~~~~~v~~~~-~-~~-~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~   96 (409)
T PRK11790         20 HQSAVEVLRAAGYTNIEYHK-G-AL-DEEELIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVAIGCFCIGTNQVDLDAAAK   96 (409)
T ss_pred             CHHHHHHHHhcCCceEEECC-C-CC-CHHHHHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeEEEECceecccccHHHHHh
Confidence            34445556553 4 443332 1 11 233445667899999877667899999999999999999999999999999999


Q ss_pred             cCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCC
Q 043239           92 RGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFG  171 (286)
Q Consensus        92 ~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g  171 (286)
                      +||.|+|+|++++.+||||++++||++.|+++.+++.+++|.|.+.  ...+.+|.|+++||||+|+||+.+|+++++||
T Consensus        97 ~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~--~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fG  174 (409)
T PRK11790         97 RGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKS--AAGSFEVRGKTLGIVGYGHIGTQLSVLAESLG  174 (409)
T ss_pred             CCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCccccc--ccCcccCCCCEEEEECCCHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999999999999999853  13578999999999999999999999999999


Q ss_pred             CEEEEECCCCCCCC-CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 043239          172 CSIAYTSRKKKPGV-SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLV  250 (286)
Q Consensus       172 ~~V~~~~r~~~~~~-~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~  250 (286)
                      |+|++||++..... +.....+++|++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++||+++|+
T Consensus       175 m~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~  254 (409)
T PRK11790        175 MRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALK  254 (409)
T ss_pred             CEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence            99999998754332 23345699999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCeeEEEeeccCCCCCCcC----Ccccccc--cccccccCC
Q 043239          251 RGSLVELVLMCLRTSLMCQR----SCLHWIM--LCCLHMLLW  286 (286)
Q Consensus       251 ~~~i~ga~lDv~~~e~~~~~----~~l~~~~--~~tph~~~~  286 (286)
                      +|+|+||+||||+.||++.+    ++|+..+  ++|||+||+
T Consensus       255 ~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~  296 (409)
T PRK11790        255 SGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGS  296 (409)
T ss_pred             cCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCC
Confidence            99999999999999998763    4566555  999999986

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=2.8e-57  Score=420.46  Aligned_cols=240  Identities=23%  Similarity=0.369  Sum_probs=219.5

Q ss_pred             HHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEEEecCCC---CCcChHHHHHHHHHHH
Q 043239           42 LSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNA---FSEDGADYVVGLLVDV  118 (286)
Q Consensus        42 ~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~~l~~~L~~  118 (286)
                      +.+.++++|+++++ ..++++++++.+|+||||++.++|+|++|++++.++||.|+|+|++   ++.+||||+++++|++
T Consensus        55 ~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~  133 (347)
T PLN02928         55 VPDVIANYDICVPK-MMRLDADIIARASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGL  133 (347)
T ss_pred             HHHHhcCCcEEEEC-CCCCCHHHHhcCCCceEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHH
Confidence            45567899998875 4679999999999999999999999999999999999999999975   7899999999999999


Q ss_pred             HhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCC------------
Q 043239          119 LRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS------------  186 (286)
Q Consensus       119 ~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~------------  186 (286)
                      +|++..+++.++++.|..    ..+.+|.|+++||||+|.||+.+|++|++|||+|++|+|+......            
T Consensus       134 ~R~~~~~~~~~~~~~w~~----~~~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~  209 (347)
T PLN02928        134 LRKQNEMQISLKARRLGE----PIGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDD  209 (347)
T ss_pred             HhCHHHHHHHHHcCCccc----ccccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccc
Confidence            999999999999999964    2567899999999999999999999999999999999997432110            


Q ss_pred             ----cccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeecc
Q 043239          187 ----YPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCL  262 (286)
Q Consensus       187 ----~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~  262 (286)
                          .....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|.||+||||
T Consensus       210 ~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~  289 (347)
T PLN02928        210 LVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVA  289 (347)
T ss_pred             cccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccC
Confidence                1135689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcCCcccccc--cccccccCC
Q 043239          263 RTSLMCQRSCLHWIM--LCCLHMLLW  286 (286)
Q Consensus       263 ~~e~~~~~~~l~~~~--~~tph~~~~  286 (286)
                      +.||++.+++|+..+  ++|||+|++
T Consensus       290 ~~EP~~~~~pL~~~~nviiTPHia~~  315 (347)
T PLN02928        290 WSEPFDPDDPILKHPNVIITPHVAGV  315 (347)
T ss_pred             CCCCCCCCChhhcCCCEEECCcCCCC
Confidence            999999999887766  999999986

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=7e-57  Score=421.55  Aligned_cols=268  Identities=21%  Similarity=0.297  Sum_probs=225.1

Q ss_pred             chhhhCC-CcEEecCCCCCCCchHHHHhcc-CCceEEEEeCCCCCCHHHhccCCC--ccEEEEcCCCCCcCChhHHhhcC
Q 043239           18 NPPLSER-FTLLDPLLHSADSTHSFLSRHA-SSVRAILCLGPSPLTSDTLSLLPA--LEIVVGSTAGIDHVDLQECRRRG   93 (286)
Q Consensus        18 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~d~i~~~~~~~~~~~~l~~~~~--Lk~i~~~~~G~d~id~~~~~~~g   93 (286)
                      .+.|.+. +++..+.........+.+.+.+ .++|+++++...++++++++++|+  ||+|++.++|+||||+++|+++|
T Consensus        30 ~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~I~~~~~G~D~iD~~aa~~~g  109 (386)
T PLN02306         30 INLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYG  109 (386)
T ss_pred             HHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceEEEECCcccccccHHHHHHCC
Confidence            4556553 5654332111111233344554 579999987667899999999996  69999999999999999999999


Q ss_pred             eEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCC-CCCCcccCCCCEEEEEcCChHHHHHHHHhc-cCC
Q 043239           94 ILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHG-AYPLGSTLGGKRVGIVGLGSIGSEVAKRLV-PFG  171 (286)
Q Consensus        94 I~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~-~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~-~~g  171 (286)
                      |.|+|+|++++.+||||++++||++.|+++.+++.+++|.|.... ....|.++.|++|||||+|.||+.+|++++ +||
T Consensus       110 I~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~~fG  189 (386)
T PLN02306        110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFK  189 (386)
T ss_pred             CEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999885321 122478899999999999999999999985 999


Q ss_pred             CEEEEECCCCCCCC-------C------------cccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEE
Q 043239          172 CSIAYTSRKKKPGV-------S------------YPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVII  232 (286)
Q Consensus       172 ~~V~~~~r~~~~~~-------~------------~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilv  232 (286)
                      |+|.+||++.....       +            .....+++|++++||+|++|+|+|++|+++|+++.|++||+|++||
T Consensus       190 m~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lI  269 (386)
T PLN02306        190 MNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLV  269 (386)
T ss_pred             CEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEE
Confidence            99999998764211       0            1123589999999999999999999999999999999999999999


Q ss_pred             EcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCccccc--ccccccccCC
Q 043239          233 NVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWI--MLCCLHMLLW  286 (286)
Q Consensus       233 n~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~--~~~tph~~~~  286 (286)
                      |+|||++||++||++||++|+|.||+||||+.||++. .+|+..  .++|||+||+
T Consensus       270 N~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~-~~L~~~pNVilTPHiag~  324 (386)
T PLN02306        270 NASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMK-PGLADMKNAVVVPHIASA  324 (386)
T ss_pred             ECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCc-chHhhCCCEEECCccccC
Confidence            9999999999999999999999999999999999754 446544  3999999985

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=1.4e-56  Score=436.26  Aligned_cols=265  Identities=24%  Similarity=0.340  Sum_probs=230.7

Q ss_pred             CCCchhhhCC-CcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcC
Q 043239           15 GCFNPPLSER-FTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRG   93 (286)
Q Consensus        15 ~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~g   93 (286)
                      +...+.+.+. +++.... .  .+ .+.+.+.++++|++++++.+++++++++++|+||||+++|+|+||||+++|+++|
T Consensus        10 ~~~~~~l~~~~~~~~~~~-~--~~-~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~g   85 (525)
T TIGR01327        10 PDGIDILEDVGVEVDVQT-G--LS-REELLEIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARG   85 (525)
T ss_pred             HHHHHHHHhcCcEEEeCC-C--CC-HHHHHHHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccchhcHHHHHHCC
Confidence            3344556554 4444322 1  12 3334566789999998877889999999999999999999999999999999999


Q ss_pred             eEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCE
Q 043239           94 ILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS  173 (286)
Q Consensus        94 I~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~  173 (286)
                      |.|+|+|++++.+||||++++||++.|+++.+++.+++|.|.+.  ...+.+|.|++|||||+|.||+.+|++|++|||+
T Consensus        86 I~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~--~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~  163 (525)
T TIGR01327        86 ILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRK--AFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMK  163 (525)
T ss_pred             CEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCcccc--ccCccccCCCEEEEECCCHHHHHHHHHHHhCCCE
Confidence            99999999999999999999999999999999999999999853  2357899999999999999999999999999999


Q ss_pred             EEEECCCCCCC----CCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 043239          174 IAYTSRKKKPG----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFL  249 (286)
Q Consensus       174 V~~~~r~~~~~----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al  249 (286)
                      |++||++....    .+.....+++|++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++|++||++||
T Consensus       164 V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL  243 (525)
T TIGR01327       164 VLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEAL  243 (525)
T ss_pred             EEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHH
Confidence            99999864321    12333458999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCeeEEEeeccCCCCCCcCCcccccc--cccccccCC
Q 043239          250 VRGSLVELVLMCLRTSLMCQRSCLHWIM--LCCLHMLLW  286 (286)
Q Consensus       250 ~~~~i~ga~lDv~~~e~~~~~~~l~~~~--~~tph~~~~  286 (286)
                      ++|+|+||+||||+.||++ +++|+..+  ++|||+|++
T Consensus       244 ~~g~i~gAaLDVf~~EP~~-~~pL~~~~nvi~TPHia~~  281 (525)
T TIGR01327       244 EEGHVRAAALDVFEKEPPT-DNPLFDLDNVIATPHLGAS  281 (525)
T ss_pred             HcCCeeEEEEecCCCCCCC-CChhhcCCCeEECCCcccc
Confidence            9999999999999999964 67787666  999999985

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=6.2e-56  Score=431.84  Aligned_cols=243  Identities=26%  Similarity=0.386  Sum_probs=222.3

Q ss_pred             HHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHH
Q 043239           40 SFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVL  119 (286)
Q Consensus        40 ~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~  119 (286)
                      +.+.+.+.++|++++++.+++++++++++|+||||+++|+|+||||+++|+++||.|+|+|++++.+||||++++||++.
T Consensus        34 ~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~  113 (526)
T PRK13581         34 EELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALA  113 (526)
T ss_pred             HHHHHHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHH
Confidence            33455678999999877778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC----CCcccccCHHH
Q 043239          120 RRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG----VSYPFYANVSG  195 (286)
Q Consensus       120 R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~----~~~~~~~~l~e  195 (286)
                      |+++.+++.+++|.|.+.  ...+.+|.|++|||||+|.||+.+|+++++|||+|++|||+....    .+.. ..+++|
T Consensus       114 R~~~~~~~~~~~g~W~~~--~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~-~~~l~e  190 (526)
T PRK13581        114 RNIPQAHASLKAGKWERK--KFMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPERAAQLGVE-LVSLDE  190 (526)
T ss_pred             cCHHHHHHHHHcCCCCcc--CccccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCE-EEcHHH
Confidence            999999999999999753  235789999999999999999999999999999999999864322    1233 348999


Q ss_pred             hhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCcccc
Q 043239          196 LAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHW  275 (286)
Q Consensus       196 ~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~  275 (286)
                      ++++||+|++|+|++++|+++++++.|++||+|++|||+|||+++|++||+++|++|+|+||+||||+.||++ +++|+.
T Consensus       191 ll~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~  269 (526)
T PRK13581        191 LLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPT-DSPLFE  269 (526)
T ss_pred             HHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCC-Cchhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999976 777877


Q ss_pred             cc--cccccccCC
Q 043239          276 IM--LCCLHMLLW  286 (286)
Q Consensus       276 ~~--~~tph~~~~  286 (286)
                      .+  ++|||+|++
T Consensus       270 ~~nvilTPHia~~  282 (526)
T PRK13581        270 LPNVVVTPHLGAS  282 (526)
T ss_pred             CCCeeEcCccccc
Confidence            66  999999985

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=2e-55  Score=405.47  Aligned_cols=244  Identities=20%  Similarity=0.326  Sum_probs=217.6

Q ss_pred             HHhccCCceEEEEeCCCCCCHHHhccCC--CccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHH
Q 043239           42 LSRHASSVRAILCLGPSPLTSDTLSLLP--ALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVL  119 (286)
Q Consensus        42 ~~~~~~~~d~i~~~~~~~~~~~~l~~~~--~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~  119 (286)
                      ..+.++++|+++++..+++++++++++|  +||+|++.++|+||||+++|+++||.|+|+|++++.+||||++++||++.
T Consensus        39 ~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~  118 (330)
T PRK12480         39 TVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLV  118 (330)
T ss_pred             HHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEecccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHH
Confidence            4567789999998766789999999998  89999999999999999999999999999999999999999999999999


Q ss_pred             hcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCC-cccccCHHHhhc
Q 043239          120 RRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS-YPFYANVSGLAA  198 (286)
Q Consensus       120 R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~-~~~~~~l~e~l~  198 (286)
                      |+++.+++.+++|.|.... ...+++|+|++|||||+|.||+.+|++|+++|++|.+|+++...... .....+++++++
T Consensus       119 R~~~~~~~~~~~~~~~w~~-~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~  197 (330)
T PRK12480        119 RRFPDIERRVQAHDFTWQA-EIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIK  197 (330)
T ss_pred             HhHHHHHHHHHhCCccccc-ccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHh
Confidence            9999999999999764221 12478899999999999999999999999999999999998754332 223458999999


Q ss_pred             CCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCc---------
Q 043239          199 DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQ---------  269 (286)
Q Consensus       199 ~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~---------  269 (286)
                      +||+|++|+|.+++|.++++++.+++||+|++|||+|||.++|+++|+++|++|+|+||+||||+.||+..         
T Consensus       198 ~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~  277 (330)
T PRK12480        198 DADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDI  277 (330)
T ss_pred             cCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCcccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999621         


Q ss_pred             C----Ccccc--cccccccccCC
Q 043239          270 R----SCLHW--IMLCCLHMLLW  286 (286)
Q Consensus       270 ~----~~l~~--~~~~tph~~~~  286 (286)
                      +    .+|+.  +.++|||+|++
T Consensus       278 ~~~~~~~L~~~~nvilTPHia~~  300 (330)
T PRK12480        278 DDKTLLELIEHERILVTPHIAFF  300 (330)
T ss_pred             CchhhHHHhcCCCEEECCccccc
Confidence            1    23443  44999999986

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=100.00  E-value=5.5e-56  Score=395.13  Aligned_cols=270  Identities=25%  Similarity=0.320  Sum_probs=235.3

Q ss_pred             CCCCCCchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhc-cCCCccEEEEcCCCCCcCChhHHh
Q 043239           12 GAPGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLS-LLPALEIVVGSTAGIDHVDLQECR   90 (286)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~-~~~~Lk~i~~~~~G~d~id~~~~~   90 (286)
                      .+...-.+.+++.+..+++....  ..+ ++.+.++++|++++++.+++++++++ ...+||+|++.++|+||+|+++++
T Consensus        14 ~~~~~~~~~l~~~g~~v~~~~~~--~~e-el~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVDL~AAt   90 (406)
T KOG0068|consen   14 SLDQACIEILKDNGYQVEFKKNL--SLE-ELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVDLKAAT   90 (406)
T ss_pred             ccchHHHHHHHhcCceEEEeccC--CHH-HHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccccChhhHH
Confidence            34445667888877444443222  223 45567799999999999999999999 556899999999999999999999


Q ss_pred             hcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccC
Q 043239           91 RRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPF  170 (286)
Q Consensus        91 ~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~  170 (286)
                      ++||.|.|+|.+|+.++||+++++++++.|++++....+++|+|.+.  ..+|.++.|||+||+|+|+||+.+|++++.+
T Consensus        91 e~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~--~~~G~el~GKTLgvlG~GrIGseVA~r~k~~  168 (406)
T KOG0068|consen   91 ENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRV--KYLGWELRGKTLGVLGLGRIGSEVAVRAKAM  168 (406)
T ss_pred             hCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeec--ceeeeEEeccEEEEeecccchHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999976  3479999999999999999999999999999


Q ss_pred             CCEEEEECCCCCCCC---CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 043239          171 GCSIAYTSRKKKPGV---SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVH  247 (286)
Q Consensus       171 g~~V~~~~r~~~~~~---~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~  247 (286)
                      ||+|++||+-.....   ......+++|+++.||+|++|+|++|+|+++++.+.|.+||+|..+||++||++||+.+|++
T Consensus       169 gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~  248 (406)
T KOG0068|consen  169 GMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVR  248 (406)
T ss_pred             CceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHH
Confidence            999999987443321   12246799999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCeeEEEeeccCCCCCCc--CCcc--cccccccccccCC
Q 043239          248 FLVRGSLVELVLMCLRTSLMCQ--RSCL--HWIMLCCLHMLLW  286 (286)
Q Consensus       248 al~~~~i~ga~lDv~~~e~~~~--~~~l--~~~~~~tph~~~~  286 (286)
                      ||++|++.||++|||+.||+..  .+.|  +++.+.|||+|++
T Consensus       249 Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgas  291 (406)
T KOG0068|consen  249 ALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGAS  291 (406)
T ss_pred             HHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccc
Confidence            9999999999999999998754  3333  4555999999974

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=3.1e-54  Score=401.40  Aligned_cols=242  Identities=21%  Similarity=0.265  Sum_probs=209.3

Q ss_pred             CchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEE
Q 043239           17 FNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILV   96 (286)
Q Consensus        17 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v   96 (286)
                      ..+.+.+.+++..+. ..+.+ .    +.++++|++++++.+++++++++ .|+||||+++++|+||||+++++++||.|
T Consensus        12 ~~~~~~~~~ev~~~~-~~~~~-~----~~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v   84 (378)
T PRK15438         12 ARELFSRLGEVKAVP-GRPIP-V----AQLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDHVDEAWLKQAGIGF   84 (378)
T ss_pred             HHHHHhhcCcEEEeC-CCCCC-H----HHhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccccCHHHHHHCCCEE
Confidence            344555445665543 22221 2    22478999999888899999996 69999999999999999999999999999


Q ss_pred             EecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEE
Q 043239           97 TNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAY  176 (286)
Q Consensus        97 ~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~  176 (286)
                      +|+|++|+.+||||+++++|++.|+.                    +.+|.|++|||||+|+||+.+|+++++|||+|.+
T Consensus        85 ~napg~na~aVAE~~~~~lL~l~r~~--------------------g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~  144 (378)
T PRK15438         85 SAAPGCNAIAVVEYVFSSLLMLAERD--------------------GFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLL  144 (378)
T ss_pred             EECCCcCchHHHHHHHHHHHHHhccC--------------------CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEE
Confidence            99999999999999999999998861                    2368999999999999999999999999999999


Q ss_pred             ECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChh----hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          177 TSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEE----THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       177 ~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~----t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      ||+..........+.++++++++||+|++|+|+|++    |.++++++.|++||+|++|||+|||++||++||+++|++|
T Consensus       145 ~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g  224 (378)
T PRK15438        145 CDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEG  224 (378)
T ss_pred             ECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhC
Confidence            997544322222467999999999999999999996    9999999999999999999999999999999999999999


Q ss_pred             CeeEEEeeccCCCCCCcCCcccccc-cccccccCC
Q 043239          253 SLVELVLMCLRTSLMCQRSCLHWIM-LCCLHMLLW  286 (286)
Q Consensus       253 ~i~ga~lDv~~~e~~~~~~~l~~~~-~~tph~~~~  286 (286)
                      ++.+|+||||+.||.+ +.+++.+. |+|||||||
T Consensus       225 ~~~ga~LDV~e~EP~~-~~~Ll~~~~i~TPHiAg~  258 (378)
T PRK15438        225 QKLSVVLDVWEGEPEL-NVELLKKVDIGTPHIAGY  258 (378)
T ss_pred             CCcEEEEecCCCCCCC-chhhhhcCCEECCccCcC
Confidence            9999999999999964 44577776 999999997

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=8.4e-54  Score=395.50  Aligned_cols=243  Identities=19%  Similarity=0.285  Sum_probs=216.6

Q ss_pred             HhccCCceEEEEeCCCCCCHHHhccCCC--ccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHh
Q 043239           43 SRHASSVRAILCLGPSPLTSDTLSLLPA--LEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLR  120 (286)
Q Consensus        43 ~~~~~~~d~i~~~~~~~~~~~~l~~~~~--Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R  120 (286)
                      .+.+.++|+++++..+++++++++++|+  ||+|+++|+|+||||+++|+++||.|+|+|++++.+||||++++||+++|
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R  119 (332)
T PRK08605         40 VEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVR  119 (332)
T ss_pred             HHHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEcccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhc
Confidence            4566899999987778999999999997  99999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHh-ccCCCEEEEECCCCCCCC--CcccccCHHHhh
Q 043239          121 RVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGV--SYPFYANVSGLA  197 (286)
Q Consensus       121 ~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l-~~~g~~V~~~~r~~~~~~--~~~~~~~l~e~l  197 (286)
                      ++..+++.+++|.|.... ...+++|.|++|||||+|.||+++|++| +++|++|++||++.....  ......++++++
T Consensus       120 ~~~~~~~~~~~~~~~~~~-~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell  198 (332)
T PRK08605        120 HFNQIQTKVREHDFRWEP-PILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAV  198 (332)
T ss_pred             ChHHHHHHHHhCCccccc-ccccceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHH
Confidence            999999999999874321 1247899999999999999999999999 789999999998765422  222345899999


Q ss_pred             cCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCC--CCcCC----
Q 043239          198 ADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSL--MCQRS----  271 (286)
Q Consensus       198 ~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~--~~~~~----  271 (286)
                      ++||+|++|+|.++.|+++++++.+++||+|++|||+|||.++|+++|+++|++|+|+||+||||+.||  ++.++    
T Consensus       199 ~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~  278 (332)
T PRK08605        199 EGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQT  278 (332)
T ss_pred             HhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCcccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999997  34443    


Q ss_pred             -------ccc--ccccccccccCC
Q 043239          272 -------CLH--WIMLCCLHMLLW  286 (286)
Q Consensus       272 -------~l~--~~~~~tph~~~~  286 (286)
                             +|+  .+.++|||+|+|
T Consensus       279 ~~~~~~~~L~~~~nvilTPHia~~  302 (332)
T PRK08605        279 INDPLLESLINREDVILTPHIAFY  302 (332)
T ss_pred             ccchhhHHHhcCCCEEECCccccc
Confidence                   243  344999999986

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=100.00  E-value=3.2e-53  Score=395.64  Aligned_cols=222  Identities=21%  Similarity=0.326  Sum_probs=200.5

Q ss_pred             hccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcch
Q 043239           44 RHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVS  123 (286)
Q Consensus        44 ~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~  123 (286)
                      +.++++|++++++.+++++++++. ++||||+++++|+||||+++++++||.|+|+||+|+.+||||+++++|++.|+  
T Consensus        33 ~~l~daD~liv~~~t~v~~~ll~~-~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~--  109 (381)
T PRK00257         33 AAVRDADVLLVRSVTRVDRALLEG-SRVRFVGTCTIGTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER--  109 (381)
T ss_pred             HHhCCceEEEEeCCCCCCHHHhcC-CCCeEEEECCccccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc--
Confidence            345799999998888999999984 89999999999999999999999999999999999999999999999999875  


Q ss_pred             HHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEE
Q 043239          124 SIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVL  203 (286)
Q Consensus       124 ~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV  203 (286)
                                        .+.++.|++|||||+|+||+.+|++++++|++|++||+......+...+.++++++++||+|
T Consensus       110 ------------------~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV  171 (381)
T PRK00257        110 ------------------EGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVI  171 (381)
T ss_pred             ------------------cCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEE
Confidence                              23469999999999999999999999999999999998654333333467899999999999


Q ss_pred             EEeccCCh----hhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCcccccccc
Q 043239          204 IVCCALTE----ETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWIMLC  279 (286)
Q Consensus       204 ~~~lp~~~----~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~~~~  279 (286)
                      ++|+|+|+    +|+++|+++.|++||+|++|||+|||++||++||+++|++|++.+|+||||+.||.+....+..+.++
T Consensus       172 ~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~nvi~  251 (381)
T PRK00257        172 SLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADLCTIA  251 (381)
T ss_pred             EEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhCCEEE
Confidence            99999998    59999999999999999999999999999999999999999999999999999997544434445599


Q ss_pred             cccccCC
Q 043239          280 CLHMLLW  286 (286)
Q Consensus       280 tph~~~~  286 (286)
                      |||||||
T Consensus       252 TPHiAg~  258 (381)
T PRK00257        252 TPHIAGY  258 (381)
T ss_pred             cCccccC
Confidence            9999997

>PRK06436 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=9e-53  Score=383.04  Aligned_cols=225  Identities=24%  Similarity=0.315  Sum_probs=201.6

Q ss_pred             CCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHH
Q 043239           47 SSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSID  126 (286)
Q Consensus        47 ~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~  126 (286)
                      .++|++++.. .      +..+++||||++.++|+||||+++|++++|.++|. +.++.+||||++++||++.|+++.++
T Consensus        33 ~~a~~~~~~~-~------~~~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~  104 (303)
T PRK06436         33 YDAEAILIKG-R------YVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENN  104 (303)
T ss_pred             CCCCEEEecC-C------cCCCCCeEEEEECCcccCcccHHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHH
Confidence            4777876533 1      23468999999999999999999999988888775 78899999999999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCcc-cccCHHHhhcCCCEEEE
Q 043239          127 RFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYP-FYANVSGLAADSDVLIV  205 (286)
Q Consensus       127 ~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~-~~~~l~e~l~~aDiV~~  205 (286)
                      +.+++|.|...    .+++|.|++|||||+|+||+.+|+++++||++|++|+|+.... +.. ...++++++++||+|++
T Consensus       105 ~~~~~g~w~~~----~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-~~~~~~~~l~ell~~aDiv~~  179 (303)
T PRK06436        105 YNMKNGNFKQS----PTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND-GISSIYMEPEDIMKKSDFVLI  179 (303)
T ss_pred             HHHHcCCCCCC----CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc-CcccccCCHHHHHhhCCEEEE
Confidence            99999999853    4578999999999999999999999999999999999976442 222 25689999999999999


Q ss_pred             eccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCcccccccccccccC
Q 043239          206 CCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWIMLCCLHMLL  285 (286)
Q Consensus       206 ~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~~~~tph~~~  285 (286)
                      |+|++++|+++++++.|++||+|++|||+|||+++|+++|+++|++|++.||+||||+.||++.++ ...+.++|||++|
T Consensus       180 ~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~-~~~nviiTPHi~g  258 (303)
T PRK06436        180 SLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET-NPDNVILSPHVAG  258 (303)
T ss_pred             CCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC-CCCCEEECCcccc
Confidence            999999999999999999999999999999999999999999999999999999999999988776 4567799999875

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=100.00  E-value=9.4e-53  Score=384.80  Aligned_cols=232  Identities=21%  Similarity=0.255  Sum_probs=206.5

Q ss_pred             CCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhH-----HhhcCeEEEecCC-CCCcChHHHHHHHHHHHHh
Q 043239           47 SSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQE-----CRRRGILVTNAGN-AFSEDGADYVVGLLVDVLR  120 (286)
Q Consensus        47 ~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~-----~~~~gI~v~n~~~-~~~~~vAE~~l~~~L~~~R  120 (286)
                      +++|+++++..   +.+.++ .|+||||++.|+|+|++|...     +..+||.|+|+++ .++.+||||++++||++.|
T Consensus        37 ~~a~~~~~~~~---~~~~l~-~~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r  112 (312)
T PRK15469         37 DPADYALVWHP---PVEMLA-GRDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFR  112 (312)
T ss_pred             ccCeEEEEeCC---ChHHhc-cCCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHc
Confidence            68899998652   567776 589999999999999998322     4458999999864 6899999999999999999


Q ss_pred             cchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCc---ccccCHHHhh
Q 043239          121 RVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY---PFYANVSGLA  197 (286)
Q Consensus       121 ~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~---~~~~~l~e~l  197 (286)
                      +++.+...++++.|...    .+.++.|+||||||+|.||+.+|++|++|||+|.+|+++.+...+.   ....++++++
T Consensus       113 ~~~~~~~~~~~~~w~~~----~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l  188 (312)
T PRK15469        113 RFDDYQALQNSSHWQPL----PEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFL  188 (312)
T ss_pred             ChHHHHHHHHhCCcCCC----CCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHH
Confidence            99999999999999742    3457999999999999999999999999999999999876553322   2346899999


Q ss_pred             cCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCcccccc
Q 043239          198 ADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWIM  277 (286)
Q Consensus       198 ~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~~  277 (286)
                      ++||+|++|+|+|++|+++++++.|++||+|++|||+|||++||+++|++||++|+|+||+||||+.||++.+++|+..+
T Consensus       189 ~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~  268 (312)
T PRK15469        189 SQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHP  268 (312)
T ss_pred             hcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887655


Q ss_pred             --cccccccCC
Q 043239          278 --LCCLHMLLW  286 (286)
Q Consensus       278 --~~tph~~~~  286 (286)
                        ++|||+||+
T Consensus       269 nvi~TPHiag~  279 (312)
T PRK15469        269 RVAITPHVAAV  279 (312)
T ss_pred             CeEECCcCCCC
Confidence              999999985

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=100.00  E-value=1.6e-51  Score=373.74  Aligned_cols=235  Identities=40%  Similarity=0.637  Sum_probs=210.7

Q ss_pred             eEEEEeCCCCCCHHHhccC-CCccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHH
Q 043239           50 RAILCLGPSPLTSDTLSLL-PALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRF  128 (286)
Q Consensus        50 d~i~~~~~~~~~~~~l~~~-~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~  128 (286)
                      .++.+......+.+.+.+. |+||+|+++|+|+||||+++|++|||+|+|+|+.+..+|||++++++|.++|++..+++.
T Consensus        63 ~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~  142 (336)
T KOG0069|consen   63 IAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEM  142 (336)
T ss_pred             eeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            3444444556677777765 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCC----cccccCHHHhhcCCCEEE
Q 043239          129 VRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS----YPFYANVSGLAADSDVLI  204 (286)
Q Consensus       129 ~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~----~~~~~~l~e~l~~aDiV~  204 (286)
                      +++|.|.....++.+..+.||||||+|+|+||+.+|++|++||+.+.|++|+..+...    .....++++++++||+|+
T Consensus       143 ~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~iv  222 (336)
T KOG0069|consen  143 VRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIV  222 (336)
T ss_pred             hhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEE
Confidence            9999996556667889999999999999999999999999999889999997765432    123569999999999999


Q ss_pred             EeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCccccc--cccccc
Q 043239          205 VCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWI--MLCCLH  282 (286)
Q Consensus       205 ~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~--~~~tph  282 (286)
                      +|||+|++|+++||++.+++||+|+++||++||.++|++++++||++|+|.+++||||+.|| +.+.++..+  .++|||
T Consensus       223 v~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP-~~~~~l~~~dnvv~~PH  301 (336)
T KOG0069|consen  223 VNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP-PVDHPLLTLDNVVILPH  301 (336)
T ss_pred             EecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC-CCCcchhcccceeEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999 555545444  499999


Q ss_pred             ccC
Q 043239          283 MLL  285 (286)
Q Consensus       283 ~~~  285 (286)
                      ||+
T Consensus       302 igs  304 (336)
T KOG0069|consen  302 IGS  304 (336)
T ss_pred             ccc
Confidence            986

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=100.00  E-value=8.3e-44  Score=301.76  Aligned_cols=172  Identities=31%  Similarity=0.470  Sum_probs=150.3

Q ss_pred             HHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----Cc
Q 043239          112 VGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----SY  187 (286)
Q Consensus       112 l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----~~  187 (286)
                      +++||++.|+++.+++.++++.|. ......++++.|++|||||+|.||+.+|+++++||++|++|+|+.....    ..
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W~-~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~   79 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEWA-SRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFG   79 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBHH-HHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTT
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCCC-CCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccccc
Confidence            689999999999999999999991 1112468899999999999999999999999999999999999887532    12


Q ss_pred             ccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCC
Q 043239          188 PFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLM  267 (286)
Q Consensus       188 ~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~  267 (286)
                      ....+++|++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|++.||+||||+.||+
T Consensus        80 ~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~  159 (178)
T PF02826_consen   80 VEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPL  159 (178)
T ss_dssp             EEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSS
T ss_pred             ceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCC
Confidence            24679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCcccccc--ccccccc
Q 043239          268 CQRSCLHWIM--LCCLHML  284 (286)
Q Consensus       268 ~~~~~l~~~~--~~tph~~  284 (286)
                      +.+++|+..+  ++|||+|
T Consensus       160 ~~~~~l~~~~nvi~TPH~a  178 (178)
T PF02826_consen  160 PADSPLWDLPNVILTPHIA  178 (178)
T ss_dssp             STTHHHHTSTTEEEESS-T
T ss_pred             CCCChHHcCCCEEEeCccC
Confidence            9998888765  9999997

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=99.94  E-value=9e-27  Score=210.38  Aligned_cols=237  Identities=22%  Similarity=0.324  Sum_probs=198.8

Q ss_pred             cCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHH
Q 043239           46 ASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSI  125 (286)
Q Consensus        46 ~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~  125 (286)
                      ++++-.-+.+....++++.+++++.||++...+.|+|++|+.++.+.||.|||.|+.....+|.-++..+|.++|+-.-.
T Consensus        71 Lneavgam~yh~i~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~  150 (435)
T KOG0067|consen   71 LNEAVGAMMYHTITLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWL  150 (435)
T ss_pred             HHHhhhcceeeecccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchh
Confidence            33443445556678999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHcCCCCCCCC----CC-CcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCC----CCCcccccCHHHh
Q 043239          126 DRFVRNGLWPDHGA----YP-LGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP----GVSYPFYANVSGL  196 (286)
Q Consensus       126 ~~~~~~~~w~~~~~----~~-~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~----~~~~~~~~~l~e~  196 (286)
                      ....++|.|...-.    .. ....+.|.+.|++|+|+.|++++.+.++||+.|..||+....    ..+.....++.++
T Consensus       151 cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVytlqd~  230 (435)
T KOG0067|consen  151 CQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYTLQDL  230 (435)
T ss_pred             hhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhcccceecccchh
Confidence            88888888764310    11 234688999999999999999999999999999999976543    2345556679999


Q ss_pred             hcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCccccc
Q 043239          197 AADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWI  276 (286)
Q Consensus       197 l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~  276 (286)
                      +.++|.+++++.+.+.+.++|+.-.+.+|+.|+.++|++||.++|+++|.++|+.|++++++    .......+-..-.+
T Consensus       231 ~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa----~~~~~~~~l~d~pn  306 (435)
T KOG0067|consen  231 LYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA----PRSFKQGPLKDAPN  306 (435)
T ss_pred             hhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc----CcccccccccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999988    11111111112234


Q ss_pred             ccccccccCC
Q 043239          277 MLCCLHMLLW  286 (286)
Q Consensus       277 ~~~tph~~~~  286 (286)
                      .|||||.++|
T Consensus       307 ~ic~~~ta~~  316 (435)
T KOG0067|consen  307 LICTPHTAWY  316 (435)
T ss_pred             CCCCcccchh
Confidence            4999999876

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.83  E-value=2.5e-20  Score=177.15  Aligned_cols=169  Identities=16%  Similarity=0.246  Sum_probs=136.0

Q ss_pred             cCCCCCcCC-hhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEc
Q 043239           77 STAGIDHVD-LQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVG  155 (286)
Q Consensus        77 ~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG  155 (286)
                      +++|+..+- .......+|+|+|+|+.+..+++|+++++++++...      .++.+          +..++|++++|+|
T Consensus       198 TttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~------~~R~~----------~~~LaGKtVgVIG  261 (476)
T PTZ00075        198 TTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLIDG------IFRAT----------DVMIAGKTVVVCG  261 (476)
T ss_pred             chHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHHH------HHHhc----------CCCcCCCEEEEEC
Confidence            466766552 222334689999999999999999999999998843      33333          3468999999999


Q ss_pred             CChHHHHHHHHhccCCCEEEEECCCCCCC-----CCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcE
Q 043239          156 LGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGV  230 (286)
Q Consensus       156 ~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~i  230 (286)
                      +|.||+.+|++++++|++|+++++++...     .++ ...++++++++||+|++|.    .+.++|+++.|+.||+|++
T Consensus       262 ~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~-~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKpGAi  336 (476)
T PTZ00075        262 YGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGY-QVVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKNNAI  336 (476)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCc-eeccHHHHHhcCCEEEECC----CcccccCHHHHhccCCCcE
Confidence            99999999999999999999998765443     122 2457999999999999984    3688999999999999999


Q ss_pred             EEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCcc
Q 043239          231 IINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCL  273 (286)
Q Consensus       231 lvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l  273 (286)
                      ++|+||+   |.+.+.++|+.+.    ++|+++.+|......+
T Consensus       337 LINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~~~~~  372 (476)
T PTZ00075        337 VGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVDRYTF  372 (476)
T ss_pred             EEEcCCC---chHHhHHHHHhcC----CceeecccCCCCeEEe
Confidence            9999999   7888889988754    6899998876554433

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.83  E-value=2e-20  Score=169.63  Aligned_cols=183  Identities=17%  Similarity=0.207  Sum_probs=143.9

Q ss_pred             ccCCceEEEEe----------------CCCCCCHHHhccCCCccEEEEcCCCCCcCChh-HHhhcCeEEE------ecCC
Q 043239           45 HASSVRAILCL----------------GPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQ-ECRRRGILVT------NAGN  101 (286)
Q Consensus        45 ~~~~~d~i~~~----------------~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~-~~~~~gI~v~------n~~~  101 (286)
                      .++++|+++..                ....+++++++++|   .++...+|+++.|++ .|+++||+|+      |++.
T Consensus        51 ~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~  127 (287)
T TIGR02853        51 DLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTK---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAI  127 (287)
T ss_pred             hhccCCEEEECCccccCCceEecccccCCccccHHHHHhcC---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEE
Confidence            35678888763                12336788998888   377788999999998 9999999999      8888


Q ss_pred             CCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCC
Q 043239          102 AFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       102 ~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      +|+.++||.++.+++..                       .+.+++|++++|+|+|.||+.+|+.|+++|++|++++|+.
T Consensus       128 ~n~~~~Ae~ai~~al~~-----------------------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       128 YNSIPTAEGAIMMAIEH-----------------------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             EccHhHHHHHHHHHHHh-----------------------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            99999999999877742                       1236889999999999999999999999999999999987


Q ss_pred             CCCC-----Ccc--cccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCc-ccCHHHHHHHHHhCC
Q 043239          182 KPGV-----SYP--FYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGA-LIDEKELVHFLVRGS  253 (286)
Q Consensus       182 ~~~~-----~~~--~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~-~vd~~al~~al~~~~  253 (286)
                      ++..     +..  ...++.++++++|+|++|+|..     +++++.++.|++++++||++... -+|.    ++.++..
T Consensus       185 ~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~-----ii~~~~l~~~k~~aliIDlas~Pg~tdf----~~Ak~~G  255 (287)
T TIGR02853       185 ADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL-----VLTADVLSKLPKHAVIIDLASKPGGTDF----EYAKKRG  255 (287)
T ss_pred             HHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCCCCCCH----HHHHHCC
Confidence            5421     211  2346788899999999999853     67888999999999999998643 3443    4556667


Q ss_pred             eeEEEeecc
Q 043239          254 LVELVLMCL  262 (286)
Q Consensus       254 i~ga~lDv~  262 (286)
                      ++....+-.
T Consensus       256 ~~a~~~~gl  264 (287)
T TIGR02853       256 IKALLAPGL  264 (287)
T ss_pred             CEEEEeCCC
Confidence            665554433

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.67  E-value=4.7e-16  Score=141.82  Aligned_cols=187  Identities=18%  Similarity=0.246  Sum_probs=139.5

Q ss_pred             HhccCCceEEEEeCC----------------CCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEEEecCCC----
Q 043239           43 SRHASSVRAILCLGP----------------SPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNA----  102 (286)
Q Consensus        43 ~~~~~~~d~i~~~~~----------------~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~----  102 (286)
                      .+.++++|+++..-+                ..++++.++.+|++..+. .|.+.++++ +.+.++||++.+....    
T Consensus        50 ~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~  127 (296)
T PRK08306         50 EEALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVA  127 (296)
T ss_pred             HHHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhh
Confidence            345678999986311                123688999999997554 588888987 7889999999987754    


Q ss_pred             --CCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCC
Q 043239          103 --FSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRK  180 (286)
Q Consensus       103 --~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~  180 (286)
                        ++.++||.++.+.+.   +                    .+..+.|++++|+|+|.+|+.+++.|+.+|++|++++|+
T Consensus       128 ~~ns~~~aegav~~a~~---~--------------------~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~  184 (296)
T PRK08306        128 ILNSIPTAEGAIMMAIE---H--------------------TPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARK  184 (296)
T ss_pred             hhccHhHHHHHHHHHHH---h--------------------CCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence              889999997765432   1                    123478999999999999999999999999999999998


Q ss_pred             CCCC-----CCcc--cccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCC--CcccCHHHHHHHHHh
Q 043239          181 KKPG-----VSYP--FYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGR--GALIDEKELVHFLVR  251 (286)
Q Consensus       181 ~~~~-----~~~~--~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~sr--g~~vd~~al~~al~~  251 (286)
                      .+..     .+..  ...++.+.++++|+|++++|.     .+++++.++.|++++++||++.  |. +|.    ++.++
T Consensus       185 ~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~~pgg-td~----~~a~~  254 (296)
T PRK08306        185 SAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLASKPGG-TDF----EYAEK  254 (296)
T ss_pred             HHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEccCCCC-cCe----eehhh
Confidence            6532     1222  234677889999999999873     4678899999999999999974  34 443    34455


Q ss_pred             CCeeEEEeeccCC
Q 043239          252 GSLVELVLMCLRT  264 (286)
Q Consensus       252 ~~i~ga~lDv~~~  264 (286)
                      .++...+.+-+..
T Consensus       255 ~Gv~~~~~~~lpg  267 (296)
T PRK08306        255 RGIKALLAPGLPG  267 (296)
T ss_pred             CCeEEEEECCCCc
Confidence            5665554444433

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.66  E-value=3.7e-16  Score=140.49  Aligned_cols=129  Identities=18%  Similarity=0.216  Sum_probs=117.6

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC------CCcccccCHHHhhcCCCEEEEeccCChhhhhccc--HH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG------VSYPFYANVSGLAADSDVLIVCCALTEETHHMIN--KD  220 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~------~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~--~~  220 (286)
                      ++||+||+|.||.+||++|.+.|+.|.+|||++++.      .+.....+..|+.+++|+|++|+|+.++.+.++.  ..
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g   80 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG   80 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence            489999999999999999999999999999998872      2566678899999999999999999999999885  46


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCcccccc
Q 043239          221 VMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWIM  277 (286)
Q Consensus       221 ~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~~  277 (286)
                      .++.+|+|.+|||+|+.++...+.+.++++++.+...-..|....+...+..|-.+.
T Consensus        81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimv  137 (286)
T COG2084          81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMV  137 (286)
T ss_pred             hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEe
Confidence            899999999999999999999999999999999999999999999988888776654

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.66  E-value=1e-16  Score=129.34  Aligned_cols=95  Identities=27%  Similarity=0.346  Sum_probs=76.8

Q ss_pred             CCCCCchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhc
Q 043239           13 APGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRR   92 (286)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~   92 (286)
                      +++...+.|++.+++..+.   . ...+.+.+.++++|+++++..+++++++++.+|+||||++.|+|+|+||+++++++
T Consensus         7 ~~~~~~~~l~~~~~v~~~~---~-~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~a~~~   82 (133)
T PF00389_consen    7 LPDEEIERLEEGFEVEFCD---S-PSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNIDLEAAKER   82 (133)
T ss_dssp             -SHHHHHHHHHTSEEEEES---S-SSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-HHHHHHT
T ss_pred             CCHHHHHHHHCCceEEEeC---C-CCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCcccHHHHhhC
Confidence            3455667788767555443   2 22445566778999999987777999999999999999999999999999999999


Q ss_pred             CeEEEecCCCCCcChHHHH
Q 043239           93 GILVTNAGNAFSEDGADYV  111 (286)
Q Consensus        93 gI~v~n~~~~~~~~vAE~~  111 (286)
                      ||.|+|+|++++.+||||+
T Consensus        83 gI~V~n~~g~~~~aVAE~a  101 (133)
T PF00389_consen   83 GIPVTNVPGYNAEAVAEHA  101 (133)
T ss_dssp             TSEEEE-TTTTHHHHHHHH
T ss_pred             eEEEEEeCCcCCcchhccc
Confidence            9999999999999999999

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.60  E-value=4e-16  Score=130.26  Aligned_cols=125  Identities=18%  Similarity=0.285  Sum_probs=100.7

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhccc-HHHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMIN-KDVM  222 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~-~~~l  222 (286)
                      ++|||||+|.||..+|++|.+.|++|++|||++++..     +.....++.|++++||+|++|+|..++++.++. .+.+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~   81 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL   81 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence            5899999999999999999999999999999876532     455678999999999999999998888887763 2278


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCcc
Q 043239          223 TALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCL  273 (286)
Q Consensus       223 ~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l  273 (286)
                      +.+++|.+|||+++.++-....+.+.+.+.++...-..|+...+......+
T Consensus        82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l  132 (163)
T PF03446_consen   82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTL  132 (163)
T ss_dssp             GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTE
T ss_pred             hccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccce
Confidence            889999999999999999999999999999999888888876655444433

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PLN02494 adenosylhomocysteinase

Probab=99.59  E-value=3e-15  Score=142.35  Aligned_cols=116  Identities=17%  Similarity=0.266  Sum_probs=101.0

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      .+.|++++|+|+|.||+.+|++++++|++|+++++++.+..     ++. ..+++++++.+|+|+.+    ..+.+++++
T Consensus       251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~-vv~leEal~~ADVVI~t----TGt~~vI~~  325 (477)
T PLN02494        251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQ-VLTLEDVVSEADIFVTT----TGNKDIIMV  325 (477)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe-eccHHHHHhhCCEEEEC----CCCccchHH
Confidence            47899999999999999999999999999999988775421     332 34789999999999874    346888999


Q ss_pred             HHHhcCCCCcEEEEcCC-CcccCHHHHHHH--HHhCCeeEEEeeccCCCC
Q 043239          220 DVMTALGKEGVIINVGR-GALIDEKELVHF--LVRGSLVELVLMCLRTSL  266 (286)
Q Consensus       220 ~~l~~mk~g~ilvn~sr-g~~vd~~al~~a--l~~~~i~ga~lDv~~~e~  266 (286)
                      +.|+.||+|++++|+|| +..||..+|.++  ++.+.++ +.+|+|+.|.
T Consensus       326 e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d  374 (477)
T PLN02494        326 DHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD  374 (477)
T ss_pred             HHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence            99999999999999999 689999999998  9999998 9999998764

>TIGR00936 ahcY adenosylhomocysteinase

Probab=99.51  E-value=7.8e-14  Score=131.54  Aligned_cols=116  Identities=19%  Similarity=0.254  Sum_probs=99.9

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      .+.|++|+|+|+|.||+.+|++++++|++|+++++++.+..     ++ ...+++++++.+|+|+.+..    +.++++.
T Consensus       192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~-~v~~leeal~~aDVVItaTG----~~~vI~~  266 (406)
T TIGR00936       192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGF-RVMTMEEAAKIGDIFITATG----NKDVIRG  266 (406)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCC-EeCCHHHHHhcCCEEEECCC----CHHHHHH
Confidence            47899999999999999999999999999999987765421     33 24467889999999987643    6778888


Q ss_pred             HHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239          220 DVMTALGKEGVIINVGRGAL-IDEKELVHFLVRGSLVELVLMCLRTS  265 (286)
Q Consensus       220 ~~l~~mk~g~ilvn~srg~~-vd~~al~~al~~~~i~ga~lDv~~~e  265 (286)
                      +.+..||+|++++|+||+.+ ||.++|.+++.+.+..+..+|+|.-+
T Consensus       267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~~  313 (406)
T TIGR00936       267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYILK  313 (406)
T ss_pred             HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEeC
Confidence            99999999999999999998 99999999998888778899998743

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.50  E-value=5.1e-14  Score=128.06  Aligned_cols=88  Identities=23%  Similarity=0.299  Sum_probs=75.1

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhccc
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMIN  218 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~  218 (286)
                      ..|+|++|||||+|.||+++|++|+++|++|.++++......     ++. ..++++++++||+|++++|+ ++++++++
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~-v~sl~Eaak~ADVV~llLPd-~~t~~V~~   89 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFE-VMSVSEAVRTAQVVQMLLPD-EQQAHVYK   89 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCE-ECCHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence            458999999999999999999999999999999976543311     332 45899999999999999997 67799999


Q ss_pred             HHHHhcCCCCcEEEE
Q 043239          219 KDVMTALGKEGVIIN  233 (286)
Q Consensus       219 ~~~l~~mk~g~ilvn  233 (286)
                      ++.+++||+|++++-
T Consensus        90 ~eil~~MK~GaiL~f  104 (335)
T PRK13403         90 AEVEENLREGQMLLF  104 (335)
T ss_pred             HHHHhcCCCCCEEEE
Confidence            999999999997753

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.49  E-value=8.9e-14  Score=134.34  Aligned_cols=127  Identities=13%  Similarity=0.141  Sum_probs=111.1

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC---------Ccc---cccCHHHhhcC---CCEEEEeccCChhh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV---------SYP---FYANVSGLAAD---SDVLIVCCALTEET  213 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~---------~~~---~~~~l~e~l~~---aDiV~~~lp~~~~t  213 (286)
                      .+||+||+|.||+.||++|...|++|.+|||+.++..         +..   .+.+++|+++.   +|+|++|+|..+.+
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV   86 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV   86 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence            3699999999999999999999999999999876532         222   45788888876   99999999999999


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCcccccc
Q 043239          214 HHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWIM  277 (286)
Q Consensus       214 ~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~~  277 (286)
                      +.++ ...++.+++|.++||+|+...-++..+.+.+++.++......|+..++.+..++ ..++
T Consensus        87 ~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~-~im~  148 (493)
T PLN02350         87 DQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP-SLMP  148 (493)
T ss_pred             HHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC-eEEe
Confidence            9888 568899999999999999999999999999999999999999999998877775 4443

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.47  E-value=1.2e-13  Score=125.72  Aligned_cols=118  Identities=13%  Similarity=0.183  Sum_probs=97.9

Q ss_pred             EEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcc-c-HHHH
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMI-N-KDVM  222 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i-~-~~~l  222 (286)
                      +|||||+|.||..+|++|...|++|.+|+|+.++..     +.....+..+++++||+|++|+|..+.++.++ . ...+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~   80 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII   80 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence            489999999999999999999999999999875432     33345688899999999999999887777665 2 3467


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCC
Q 043239          223 TALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLM  267 (286)
Q Consensus       223 ~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~  267 (286)
                      +.+++|.++||+++..+.+.+++.+.++++.+......|+..++.
T Consensus        81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~  125 (291)
T TIGR01505        81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIG  125 (291)
T ss_pred             hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHH
Confidence            788999999999999999999999999998877666666655543

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.46  E-value=1.8e-13  Score=124.84  Aligned_cols=126  Identities=16%  Similarity=0.181  Sum_probs=105.6

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhccc--HHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMIN--KDV  221 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~--~~~  221 (286)
                      ++|||||+|.||.++|+.|...|++|++|||++++..     +.....+..+++++||+|++|+|.....+.++.  ...
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i   81 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV   81 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence            3799999999999999999999999999999876532     334567888999999999999998777777764  246


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCccc
Q 043239          222 MTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLH  274 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~  274 (286)
                      ++.+++|.++||+|++.+...+.+.+.+.++++......|....+...++.+.
T Consensus        82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~  134 (296)
T PRK15461         82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLL  134 (296)
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEE
Confidence            77889999999999999999999999999999988777787776555555443

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.45  E-value=2.8e-13  Score=123.75  Aligned_cols=122  Identities=16%  Similarity=0.205  Sum_probs=102.3

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcC---CCEEEEeccCChhhhhcccHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAAD---SDVLIVCCALTEETHHMINKD  220 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~---aDiV~~~lp~~~~t~~~i~~~  220 (286)
                      ++|||||+|.||..+|++|...|++|++|||+.++..     +.....++++++++   +|+|++|+|..+.++.++ .+
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~   79 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KD   79 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HH
Confidence            4799999999999999999999999999999865422     34456788888876   699999999887888877 46


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCC
Q 043239          221 VMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRS  271 (286)
Q Consensus       221 ~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~  271 (286)
                      .++.+++|.++||+|+..+.+...+.+.+.+.++......|+...+....+
T Consensus        80 i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g  130 (299)
T PRK12490         80 LYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNG  130 (299)
T ss_pred             HhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcC
Confidence            778899999999999999999999999999988887666688776554444

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.45  E-value=2.2e-13  Score=124.04  Aligned_cols=122  Identities=17%  Similarity=0.221  Sum_probs=101.3

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhccc--HHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMIN--KDV  221 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~--~~~  221 (286)
                      ++|||||+|.||+.+|+.+...|++|.+|||+.++..     +.....++++++++||+|++|+|.+..++.++.  ...
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~   82 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI   82 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence            5899999999999999999999999999999875432     333456889999999999999998887777763  346


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcC
Q 043239          222 MTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQR  270 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~  270 (286)
                      ++.+++|.+|||+++..+...+++.+.+.+.++...--.|+..++....
T Consensus        83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~  131 (296)
T PRK11559         83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAID  131 (296)
T ss_pred             hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhh
Confidence            7889999999999999998999999999988887766677776654333

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.39  E-value=1e-12  Score=120.25  Aligned_cols=122  Identities=18%  Similarity=0.229  Sum_probs=102.0

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcC---CCEEEEeccCChhhhhcccHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAAD---SDVLIVCCALTEETHHMINKD  220 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~---aDiV~~~lp~~~~t~~~i~~~  220 (286)
                      ++|||||+|.||+.+|++|...|++|.+|||++++..     +.....+++++++.   +|+|++++|..+.+..++ ..
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~   79 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DE   79 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HH
Confidence            4799999999999999999999999999999876532     34445688888875   699999999877777776 46


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCC
Q 043239          221 VMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRS  271 (286)
Q Consensus       221 ~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~  271 (286)
                      .++.+++|.++||++++.......+.+.+++.++......|....+....+
T Consensus        80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g  130 (301)
T PRK09599         80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERG  130 (301)
T ss_pred             HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcC
Confidence            778899999999999999999999999999999987777777776544444

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.39  E-value=1e-12  Score=119.79  Aligned_cols=128  Identities=15%  Similarity=0.154  Sum_probs=104.5

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC----CCcccccCHHHhhcCCCEEEEeccCChhhhhcccH--HHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINK--DVM  222 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~--~~l  222 (286)
                      ++|||||+|.||..||++|...|++|.+|+++++..    .+.....+..+++++||+|++|+|..++.+.++..  ..+
T Consensus         1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~   80 (292)
T PRK15059          1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT   80 (292)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence            379999999999999999999999999999876421    13445678889999999999999988787777632  357


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCccccc
Q 043239          223 TALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWI  276 (286)
Q Consensus       223 ~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~  276 (286)
                      +.+++|.++||+|+..+-....+.+.+.+.++......|...++....+.+..+
T Consensus        81 ~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~  134 (292)
T PRK15059         81 KASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIM  134 (292)
T ss_pred             ccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEE
Confidence            778999999999999999999999999998888777778777765555544433

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=99.38  E-value=1e-12  Score=117.10  Aligned_cols=130  Identities=15%  Similarity=0.189  Sum_probs=114.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccH--
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINK--  219 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~--  219 (286)
                      +.++||+||+|.||..|+.+|.+.|++|++|||+..+..     +.....++.|+.+.||+|+.++|.....+.++..  
T Consensus        34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~  113 (327)
T KOG0409|consen   34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKS  113 (327)
T ss_pred             ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCC
Confidence            578999999999999999999999999999999988764     5667889999999999999999998888887743  


Q ss_pred             HHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCccccc
Q 043239          220 DVMTALGKEGVI-INVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWI  276 (286)
Q Consensus       220 ~~l~~mk~g~il-vn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~  276 (286)
                      ..++..++|... ||.++-++.-...+.++++..+.+..-..|....+.++.+.|-.+
T Consensus       114 Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~Ltim  171 (327)
T KOG0409|consen  114 GVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIM  171 (327)
T ss_pred             cceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEE
Confidence            367878888777 999999999999999999999999999999988888888766554

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.35  E-value=2.5e-12  Score=124.01  Aligned_cols=123  Identities=15%  Similarity=0.212  Sum_probs=107.9

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC---------C--cccccCHHHhhc---CCCEEEEeccCChhhh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV---------S--YPFYANVSGLAA---DSDVLIVCCALTEETH  214 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~---------~--~~~~~~l~e~l~---~aDiV~~~lp~~~~t~  214 (286)
                      .+|||||+|.||++||++|...|++|.+|||+.++..         +  .....+++|+++   ++|+|++++|..+.++
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~   81 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD   81 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence            4799999999999999999999999999999887521         2  224678989886   5899999999999999


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCc
Q 043239          215 HMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSC  272 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~  272 (286)
                      .++ ++.++.+++|.++||++.+...++..+.+.+.+.++.+....|+..++.+..++
T Consensus        82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~  138 (470)
T PTZ00142         82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGP  138 (470)
T ss_pred             HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCC
Confidence            888 468888999999999999999999999999999999999999999988766664

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=99.34  E-value=4.2e-12  Score=120.53  Aligned_cols=151  Identities=18%  Similarity=0.280  Sum_probs=110.0

Q ss_pred             EcCCCCCcC-ChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEE
Q 043239           76 GSTAGIDHV-DLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIV  154 (286)
Q Consensus        76 ~~~~G~d~i-d~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIi  154 (286)
                      -+++|+..+ ......+.+++|.|++..+..+.-|...+.-.+....+.+      .          .+..+.|++++|+
T Consensus       155 eTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~r------a----------t~~~l~Gk~VlVi  218 (425)
T PRK05476        155 ETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGIKR------A----------TNVLIAGKVVVVA  218 (425)
T ss_pred             cchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHHHHH------h----------ccCCCCCCEEEEE
Confidence            356776655 2233345789999999887777555333322222211111      0          1234789999999


Q ss_pred             cCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCc
Q 043239          155 GLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEG  229 (286)
Q Consensus       155 G~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~  229 (286)
                      |+|.||+.+|++++++|++|+++++++.+..     ++. ..+++++++.+|+|+.+..    +.++++.+.+..||+|+
T Consensus       219 G~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~-v~~l~eal~~aDVVI~aTG----~~~vI~~~~~~~mK~Ga  293 (425)
T PRK05476        219 GYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFR-VMTMEEAAELGDIFVTATG----NKDVITAEHMEAMKDGA  293 (425)
T ss_pred             CCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCE-ecCHHHHHhCCCEEEECCC----CHHHHHHHHHhcCCCCC
Confidence            9999999999999999999999998775532     222 4578899999999988753    56688889999999999


Q ss_pred             EEEEcCCCcc-cCHHHHHH
Q 043239          230 VIINVGRGAL-IDEKELVH  247 (286)
Q Consensus       230 ilvn~srg~~-vd~~al~~  247 (286)
                      +++|+|+... +|..+|.+
T Consensus       294 iliNvG~~d~Eid~~~L~~  312 (425)
T PRK05476        294 ILANIGHFDNEIDVAALEE  312 (425)
T ss_pred             EEEEcCCCCCccChHHHhh
Confidence            9999999876 78887765

>PLN02858 fructose-bisphosphate aldolase

Probab=99.32  E-value=3.9e-12  Score=136.00  Aligned_cols=131  Identities=17%  Similarity=0.118  Sum_probs=114.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcc--cH
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMI--NK  219 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i--~~  219 (286)
                      +..+||+||+|.||..||++|...|++|.+|||++++..     +...+.++.|+.++||+|++|+|..+..+.++  ..
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~   82 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE   82 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence            356899999999999999999999999999999877543     45567899999999999999999999988887  34


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC--eeEEEeeccCCCCCCcCCcccccc
Q 043239          220 DVMTALGKEGVIINVGRGALIDEKELVHFLVRGS--LVELVLMCLRTSLMCQRSCLHWIM  277 (286)
Q Consensus       220 ~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~--i~ga~lDv~~~e~~~~~~~l~~~~  277 (286)
                      ..++.+++|.++||+|+.++-..+.+.+.+.+.+  +...-..|+...+.+..+.|..+.
T Consensus        83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imv  142 (1378)
T PLN02858         83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIA  142 (1378)
T ss_pred             hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEE
Confidence            5788899999999999999999999999999988  888888899888777777666544

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.31  E-value=9.5e-12  Score=113.69  Aligned_cols=121  Identities=17%  Similarity=0.208  Sum_probs=98.8

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHh---hcCCCEEEEeccCChhhhhcccHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGL---AADSDVLIVCCALTEETHHMINKD  220 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~---l~~aDiV~~~lp~~~~t~~~i~~~  220 (286)
                      ++|||||+|.||..+|+.|...|++|.+|||+.++..     +.....+++++   +.++|+|++++|.. .++.++ ++
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~   78 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE   78 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence            4799999999999999999999999999999876532     22233455554   45789999999976 777777 46


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCC
Q 043239          221 VMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRS  271 (286)
Q Consensus       221 ~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~  271 (286)
                      ..+.+++|.++||++.+...+...+.+.+++.++......|+...+....+
T Consensus        79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G  129 (298)
T TIGR00872        79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG  129 (298)
T ss_pred             HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC
Confidence            778899999999999999999999999999998887777777766554444

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=99.29  E-value=5.9e-12  Score=114.43  Aligned_cols=123  Identities=13%  Similarity=0.128  Sum_probs=101.3

Q ss_pred             EEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhccc--HHHHhcC
Q 043239          153 IVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMIN--KDVMTAL  225 (286)
Q Consensus       153 IiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~--~~~l~~m  225 (286)
                      |||+|.||.++|++|...|++|.+|||+.++..     +.....++.+++++||+|++|+|..+..+.++.  ...++.+
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~   80 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV   80 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence            689999999999999999999999999876532     334456889999999999999998777777763  4567788


Q ss_pred             CCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCcccc
Q 043239          226 GKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHW  275 (286)
Q Consensus       226 k~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~  275 (286)
                      ++|.++||++..++-..+.+.+.+.+.++......|+..++....+.+..
T Consensus        81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~  130 (288)
T TIGR01692        81 AKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTF  130 (288)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEE
Confidence            99999999998888888999999998888877777887776666555443

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PLN02858 fructose-bisphosphate aldolase

Probab=99.26  E-value=1.7e-11  Score=131.12  Aligned_cols=130  Identities=18%  Similarity=0.122  Sum_probs=111.2

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcc--cHH
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMI--NKD  220 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i--~~~  220 (286)
                      .++|||||+|.||..||++|...|++|.+|||+.++..     +.....++.+++++||+|++|+|..++++.++  ...
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g  403 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG  403 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence            47899999999999999999999999999999876532     33346789999999999999999888888887  345


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHh--CCeeEEEeeccCCCCCCcCCcccccc
Q 043239          221 VMTALGKEGVIINVGRGALIDEKELVHFLVR--GSLVELVLMCLRTSLMCQRSCLHWIM  277 (286)
Q Consensus       221 ~l~~mk~g~ilvn~srg~~vd~~al~~al~~--~~i~ga~lDv~~~e~~~~~~~l~~~~  277 (286)
                      .++.+++|.++||+|+.++-..+.+.+.+.+  .++......|....+.+..+.+..+.
T Consensus       404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imv  462 (1378)
T PLN02858        404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMA  462 (1378)
T ss_pred             HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEE
Confidence            7888999999999999999999999999998  88888888888888777776665543

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.26  E-value=1.3e-11  Score=119.05  Aligned_cols=122  Identities=13%  Similarity=0.175  Sum_probs=103.6

Q ss_pred             EEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC--------C--cccccCHHHhh---cCCCEEEEeccCChhhhhc
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV--------S--YPFYANVSGLA---ADSDVLIVCCALTEETHHM  216 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------~--~~~~~~l~e~l---~~aDiV~~~lp~~~~t~~~  216 (286)
                      .|||||+|.||..||++|...|++|.+|||++++..        +  .....+++++.   +++|+|++++|..+.+..+
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V   80 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV   80 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence            389999999999999999999999999999876432        1  22345777765   4689999999988888888


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCc
Q 043239          217 INKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSC  272 (286)
Q Consensus       217 i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~  272 (286)
                      + .+.++.+++|.++||+++....++..+.+.+.+..+......|+..++.+..++
T Consensus        81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~  135 (467)
T TIGR00873        81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP  135 (467)
T ss_pred             H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC
Confidence            7 467788999999999999999999999999999999999999999887666553

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.26  E-value=1.1e-11  Score=102.55  Aligned_cols=99  Identities=20%  Similarity=0.377  Sum_probs=71.2

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-----CCcccccCHHHhhcCCCEEEEeccCChhhhhccc
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGLAADSDVLIVCCALTEETHHMIN  218 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~  218 (286)
                      ..+.||++.|+|||.+|+.+|+.|+++|.+|.+++..+-+.     .++. ..+++++++++|+++.+..    ...++.
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~-v~~~~~a~~~adi~vtaTG----~~~vi~   93 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFE-VMTLEEALRDADIFVTATG----NKDVIT   93 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-E-EE-HHHHTTT-SEEEE-SS----SSSSB-
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcE-ecCHHHHHhhCCEEEECCC----CccccC
Confidence            35899999999999999999999999999999999876542     2444 4589999999999988754    467889


Q ss_pred             HHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 043239          219 KDVMTALGKEGVIINVGRGAL-IDEKELVH  247 (286)
Q Consensus       219 ~~~l~~mk~g~ilvn~srg~~-vd~~al~~  247 (286)
                      .+.|.+||+|+++.|++.-.. +|-+.|.+
T Consensus        94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L~~  123 (162)
T PF00670_consen   94 GEHFRQMKDGAILANAGHFDVEIDVDALEA  123 (162)
T ss_dssp             HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred             HHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence            999999999999999976543 55555444

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.17  E-value=6.1e-11  Score=109.16  Aligned_cols=91  Identities=21%  Similarity=0.311  Sum_probs=73.9

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC------CCcccccCHHHhhcCCCEEEEeccCChhhhhcc
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG------VSYPFYANVSGLAADSDVLIVCCALTEETHHMI  217 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~------~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i  217 (286)
                      ..++|++|||||+|+||+++|+.|+.+|++|.+++++..+.      .++. ..+..+++++||+|++++|.+.. ..++
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~-~~s~~eaa~~ADVVvLaVPd~~~-~~V~   90 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFE-VLTVAEAAKWADVIMILLPDEVQ-AEVY   90 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCe-eCCHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence            35899999999999999999999999999998877654322      1333 34889999999999999997655 6777


Q ss_pred             cHHHHhcCCCCcEEEEcCCC
Q 043239          218 NKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       218 ~~~~l~~mk~g~ilvn~srg  237 (286)
                      +++.++.|++|++| ..+.|
T Consensus        91 ~~~I~~~Lk~g~iL-~~a~G  109 (330)
T PRK05479         91 EEEIEPNLKEGAAL-AFAHG  109 (330)
T ss_pred             HHHHHhcCCCCCEE-EECCC
Confidence            67888999999987 55555

>PLN02712 arogenate dehydrogenase

Probab=99.15  E-value=1.3e-10  Score=116.65  Aligned_cols=108  Identities=17%  Similarity=0.335  Sum_probs=84.8

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC----CCcccccCHHHhhc-CCCEEEEeccCChhhhhcc
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG----VSYPFYANVSGLAA-DSDVLIVCCALTEETHHMI  217 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~----~~~~~~~~l~e~l~-~aDiV~~~lp~~~~t~~~i  217 (286)
                      +.++.+++|||||+|.||+.+|+.|+++|++|.+|+|+....    .+.....++++++. ++|+|++|+|. ..+..++
T Consensus       364 ~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~vi  442 (667)
T PLN02712        364 VNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKVL  442 (667)
T ss_pred             cCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHHH
Confidence            567899999999999999999999999999999999975421    13334567888776 59999999994 6777777


Q ss_pred             cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239          218 NKDVMTALGKEGVIINVGRGALIDEKELVHFLVR  251 (286)
Q Consensus       218 ~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~  251 (286)
                      .+-....||+|++++|++.++-...+.+.+.+..
T Consensus       443 ~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~  476 (667)
T PLN02712        443 KSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ  476 (667)
T ss_pred             HHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence            6544557999999999999885555555555544

>PLN02256 arogenate dehydrogenase

Probab=99.07  E-value=6.2e-10  Score=101.95  Aligned_cols=104  Identities=21%  Similarity=0.391  Sum_probs=79.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC----CCcccccCHHHhh-cCCCEEEEeccCChhhhhcccHHH
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG----VSYPFYANVSGLA-ADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~----~~~~~~~~l~e~l-~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      ++++|+|||+|.||+.+|+.|++.|++|.+++++....    .+.....++++++ .++|+|++|+|. ..+..++.+-.
T Consensus        35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl~~l~  113 (304)
T PLN02256         35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVLRSLP  113 (304)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHHHhhh
Confidence            56799999999999999999999999999999875321    1333456778876 479999999995 45666664433


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239          222 MTALGKEGVIINVGRGALIDEKELVHFLVR  251 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~vd~~al~~al~~  251 (286)
                      ...++++++++|++...-...+++.+.+..
T Consensus       114 ~~~l~~~~iviDv~SvK~~~~~~~~~~l~~  143 (304)
T PLN02256        114 LQRLKRSTLFVDVLSVKEFPKNLLLQVLPE  143 (304)
T ss_pred             hhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence            667899999999999765556666666543

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.03  E-value=1e-09  Score=104.13  Aligned_cols=100  Identities=18%  Similarity=0.334  Sum_probs=81.7

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcc
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMI  217 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i  217 (286)
                      +..+.|++|+|+|+|.||..+++.++++|++|+++++++.+..     ++. ..++++.+..+|+|+.+..    +..++
T Consensus       197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~-~~~~~e~v~~aDVVI~atG----~~~~i  271 (413)
T cd00401         197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYE-VMTMEEAVKEGDIFVTTTG----NKDII  271 (413)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCE-EccHHHHHcCCCEEEECCC----CHHHH
Confidence            3357899999999999999999999999999999988765532     332 3356788899999988753    45678


Q ss_pred             cHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 043239          218 NKDVMTALGKEGVIINVGRGAL-IDEKELVH  247 (286)
Q Consensus       218 ~~~~l~~mk~g~ilvn~srg~~-vd~~al~~  247 (286)
                      +...+..||+|++++|+|++.+ +|..+|..
T Consensus       272 ~~~~l~~mk~GgilvnvG~~~~eId~~~L~~  302 (413)
T cd00401         272 TGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE  302 (413)
T ss_pred             HHHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence            8888999999999999999876 77777664

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.03  E-value=9.8e-10  Score=100.83  Aligned_cols=82  Identities=23%  Similarity=0.383  Sum_probs=68.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHh-cC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMT-AL  225 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~-~m  225 (286)
                      .+++|+|||+|.||+.+|++|...|++|.+|+|+..        .++.++++++|+|++++|. +..+.++. .... .+
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~--------~~~~~~~~~advvi~~vp~-~~~~~v~~-~l~~~~~   72 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG--------LSLAAVLADADVIVSAVSM-KGVRPVAE-QVQALNL   72 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC--------CCHHHHHhcCCEEEEECCh-HHHHHHHH-HHHHhcC
Confidence            357999999999999999999999999999999753        4788899999999999996 56777763 3333 47


Q ss_pred             CCCcEEEEcCCCc
Q 043239          226 GKEGVIINVGRGA  238 (286)
Q Consensus       226 k~g~ilvn~srg~  238 (286)
                      +++.++|++++|-
T Consensus        73 ~~~~ivi~~s~gi   85 (308)
T PRK14619         73 PPETIIVTATKGL   85 (308)
T ss_pred             CCCcEEEEeCCcc
Confidence            8899999998753

>PRK08655 prephenate dehydrogenase; Provisional

Probab=98.96  E-value=1.8e-09  Score=103.66  Aligned_cols=101  Identities=20%  Similarity=0.333  Sum_probs=79.3

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      ++|+||| +|.||+++|+.|+..|++|.+++|+.+...      +.....+..+.+++||+|++|+|. ..+..++ ++.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~-~~~~~vl-~~l   78 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPI-NVTEDVI-KEV   78 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCH-HHHHHHH-HHH
Confidence            4899997 899999999999999999999998765421      333345778889999999999995 4455555 566


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239          222 MTALGKEGVIINVGRGALIDEKELVHFLVR  251 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~vd~~al~~al~~  251 (286)
                      .+.++++++++|++.......+++.+.+..
T Consensus        79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~  108 (437)
T PRK08655         79 APHVKEGSLLMDVTSVKERPVEAMEEYAPE  108 (437)
T ss_pred             HhhCCCCCEEEEcccccHHHHHHHHHhcCC
Confidence            778999999999998766666666666543

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.95  E-value=9.9e-10  Score=90.53  Aligned_cols=85  Identities=18%  Similarity=0.300  Sum_probs=62.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC------CCcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG------VSYPFYANVSGLAADSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~------~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      |++|+|+|||||..|++.|.+|+..|.+|.+-.|..++.      .++. ..+..|++++||+|++.+|+. ....+..+
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~-v~~~~eAv~~aDvV~~L~PD~-~q~~vy~~   79 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFE-VMSVAEAVKKADVVMLLLPDE-VQPEVYEE   79 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-E-CCEHHHHHHC-SEEEE-S-HH-HHHHHHHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCe-eccHHHHHhhCCEEEEeCChH-HHHHHHHH
Confidence            579999999999999999999999999999877766521      2333 568999999999999999954 34556678


Q ss_pred             HHHhcCCCCcEEE
Q 043239          220 DVMTALGKEGVII  232 (286)
Q Consensus       220 ~~l~~mk~g~ilv  232 (286)
                      +..++||+|..++
T Consensus        80 ~I~p~l~~G~~L~   92 (165)
T PF07991_consen   80 EIAPNLKPGATLV   92 (165)
T ss_dssp             HHHHHS-TT-EEE
T ss_pred             HHHhhCCCCCEEE
Confidence            8899999999765

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=98.92  E-value=3.2e-09  Score=97.62  Aligned_cols=92  Identities=22%  Similarity=0.285  Sum_probs=69.2

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCC-CCCC-----CCcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRK-KKPG-----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~-~~~~-----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      |+|++|||||+|+||+++|+.|+.+|++|+++++. .+..     .++. ..+..+++++||+|++++|.... ...+.+
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~-~~s~~ea~~~ADiVvLaVpp~~~-~~~v~~   78 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFK-VGTVEEAIPQADLIMNLLPDEVQ-HEVYEA   78 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCE-ECCHHHHHhcCCEEEEeCCcHhH-HHHHHH
Confidence            57899999999999999999999999988765443 2221     1332 34688899999999999995533 334456


Q ss_pred             HHHhcCCCCcEEEEcCCCccc
Q 043239          220 DVMTALGKEGVIINVGRGALI  240 (286)
Q Consensus       220 ~~l~~mk~g~ilvn~srg~~v  240 (286)
                      +..+.++++. +|.++.|=-+
T Consensus        79 ei~~~l~~g~-iVs~aaG~~i   98 (314)
T TIGR00465        79 EIQPLLKEGK-TLGFSHGFNI   98 (314)
T ss_pred             HHHhhCCCCc-EEEEeCCccH
Confidence            6778898886 7888877443

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=98.92  E-value=3e-09  Score=96.13  Aligned_cols=127  Identities=21%  Similarity=0.293  Sum_probs=85.6

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCC--CC-----Ccc--cccCH-HHhhcCCCEEEEeccCChhhhhcc
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP--GV-----SYP--FYANV-SGLAADSDVLIVCCALTEETHHMI  217 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~--~~-----~~~--~~~~l-~e~l~~aDiV~~~lp~~~~t~~~i  217 (286)
                      .++|+|+|+|.||+++|+.++..|+.|.+++++...  ..     +..  ...+. .+...++|+|++++|- ..+..++
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-~~~~~~l   81 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-EATEEVL   81 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-HHHHHHH
Confidence            468999999999999999999999977555544432  21     111  11233 5677889999999995 4556555


Q ss_pred             cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcC----Ccccccc-ccccc
Q 043239          218 NKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQR----SCLHWIM-LCCLH  282 (286)
Q Consensus       218 ~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~----~~l~~~~-~~tph  282 (286)
                       ++..+.+|+|++++|++.-.--.-+++.+.+.+.     . .+....|++++    ..+.... ++||.
T Consensus        82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~-----~-~~vg~HPM~G~~~~~~lf~~~~~vltp~  144 (279)
T COG0287          82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGD-----V-RFVGGHPMFGPEADAGLFENAVVVLTPS  144 (279)
T ss_pred             -HHhcccCCCCCEEEecccccHHHHHHHHHhccCC-----C-eeEecCCCCCCcccccccCCCEEEEcCC
Confidence             4566689999999999876654444554444332     1 45567787777    2222222 88885

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.92  E-value=4.4e-09  Score=95.48  Aligned_cols=80  Identities=23%  Similarity=0.432  Sum_probs=67.4

Q ss_pred             cccCCCCEEEEEcCC-hHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLG-SIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G-~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.++.||+|+|||.| .||++||.+|...|++|++|++..         .++.++.++||+|+++++..    +.+....
T Consensus       154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t---------~~l~e~~~~ADIVIsavg~~----~~v~~~~  220 (301)
T PRK14194        154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS---------TDAKALCRQADIVVAAVGRP----RLIDADW  220 (301)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC---------CCHHHHHhcCCEEEEecCCh----hcccHhh
Confidence            447999999999996 999999999999999999997653         27899999999999999854    3455544


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 043239          222 MTALGKEGVIINVGRGA  238 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~  238 (286)
                         +|+|+++||+|--.
T Consensus       221 ---ik~GaiVIDvgin~  234 (301)
T PRK14194        221 ---LKPGAVVIDVGINR  234 (301)
T ss_pred             ---ccCCcEEEEecccc
Confidence               79999999998443

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.90  E-value=8.2e-10  Score=83.57  Aligned_cols=85  Identities=24%  Similarity=0.445  Sum_probs=63.0

Q ss_pred             EEEEEcCChHHHHHHHHhccCC---CEEE-EECCCCCCCC------Cccccc-CHHHhhcCCCEEEEeccCChhhhhccc
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFG---CSIA-YTSRKKKPGV------SYPFYA-NVSGLAADSDVLIVCCALTEETHHMIN  218 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g---~~V~-~~~r~~~~~~------~~~~~~-~l~e~l~~aDiV~~~lp~~~~t~~~i~  218 (286)
                      ||||||+|+||+++++.|...|   .+|. +++|++++..      +..... +..+++++||+|++|+|.. ....+. 
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~-~~~~v~-   78 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQ-QLPEVL-   78 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GG-GHHHHH-
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHH-HHHHHH-
Confidence            6999999999999999999999   8998 5588876542      222233 7889999999999999843 333333 


Q ss_pred             HHHHhcCCCCcEEEEcCCC
Q 043239          219 KDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       219 ~~~l~~mk~g~ilvn~srg  237 (286)
                      ++. ....++.++|++.-|
T Consensus        79 ~~i-~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   79 SEI-PHLLKGKLVISIAAG   96 (96)
T ss_dssp             HHH-HHHHTTSEEEEESTT
T ss_pred             HHH-hhccCCCEEEEeCCC
Confidence            333 556789999998754

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.90  E-value=6.2e-09  Score=90.41  Aligned_cols=112  Identities=17%  Similarity=0.264  Sum_probs=95.1

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-----CCcccccCHHHh---hcCCCEEEEeccCChhhhhcccHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGL---AADSDVLIVCCALTEETHHMINKD  220 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~~~~~~~~l~e~---l~~aDiV~~~lp~~~~t~~~i~~~  220 (286)
                      +++|+||+|+||..+++++...|++|++||+++...     .+.....+++|+   +....+|.+++|..+-|..++ .+
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi-~~   79 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI-DD   79 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH-HH
Confidence            579999999999999999999999999999987643     244456677765   566789999999887777777 46


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccC
Q 043239          221 VMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLR  263 (286)
Q Consensus       221 ~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~  263 (286)
                      +-+.|.+|-++||-+....-|....++.|.++.|.  .+||-.
T Consensus        80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~GT  120 (300)
T COG1023          80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVGT  120 (300)
T ss_pred             HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEeccC
Confidence            78889999999999999999999999999999997  567653

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=98.90  E-value=2.8e-09  Score=102.66  Aligned_cols=113  Identities=12%  Similarity=0.115  Sum_probs=100.0

Q ss_pred             HHHHHHHHhccCCCEEEEECCCCCCCC----------CcccccCHHHhhcC---CCEEEEeccCChhhhhcccHHHHhcC
Q 043239          159 IGSEVAKRLVPFGCSIAYTSRKKKPGV----------SYPFYANVSGLAAD---SDVLIVCCALTEETHHMINKDVMTAL  225 (286)
Q Consensus       159 iG~~~A~~l~~~g~~V~~~~r~~~~~~----------~~~~~~~l~e~l~~---aDiV~~~lp~~~~t~~~i~~~~l~~m  225 (286)
                      ||+.||++|...|++|.+|||++++..          +...+.+++++++.   +|+|++|+|..+.+..++ ...++.|
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l   79 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL   79 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence            799999999999999999999986532          24456799998875   899999999999999988 4688999


Q ss_pred             CCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCc
Q 043239          226 GKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSC  272 (286)
Q Consensus       226 k~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~  272 (286)
                      .+|.++||+|+...-++..+.+.+++.++......|+..+..+..++
T Consensus        80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~  126 (459)
T PRK09287         80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGP  126 (459)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC
Confidence            99999999999999999999999999999999999999998766664

>PRK08818 prephenate dehydrogenase; Provisional

Probab=98.89  E-value=1.7e-08  Score=94.68  Aligned_cols=120  Identities=18%  Similarity=0.184  Sum_probs=82.3

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHhcc-CCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH-
Q 043239          146 LGGKRVGIVGL-GSIGSEVAKRLVP-FGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM-  222 (286)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~A~~l~~-~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l-  222 (286)
                      +...+|+|||+ |.||+++|+.|+. +|.+|+++|+..+      ...++++.+++||+|++|+|.. .+..++. +.. 
T Consensus         2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~------~~~~~~~~v~~aDlVilavPv~-~~~~~l~-~l~~   73 (370)
T PRK08818          2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP------GSLDPATLLQRADVLIFSAPIR-HTAALIE-EYVA   73 (370)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc------ccCCHHHHhcCCCEEEEeCCHH-HHHHHHH-HHhh
Confidence            45679999999 9999999999996 5889999998532      1346788899999999999953 4454553 333 


Q ss_pred             --hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCC--cc--ccccccccc
Q 043239          223 --TALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRS--CL--HWIMLCCLH  282 (286)
Q Consensus       223 --~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~--~l--~~~~~~tph  282 (286)
                        +.++++++++|++.-+.    ...+++....     .++....|++++.  .+  +...++||.
T Consensus        74 ~~~~l~~~~iVtDVgSvK~----~i~~~~~~~~-----~~fVG~HPMaG~E~s~lf~g~~~iltp~  130 (370)
T PRK08818         74 LAGGRAAGQLWLDVTSIKQ----APVAAMLASQ-----AEVVGLHPMTAPPKSPTLKGRVMVVCEA  130 (370)
T ss_pred             hhcCCCCCeEEEECCCCcH----HHHHHHHhcC-----CCEEeeCCCCCCCCCcccCCCeEEEeCC
Confidence              34899999999976552    2222222221     2466777877653  22  222377774

>PLN02712 arogenate dehydrogenase

Probab=98.89  E-value=4.8e-09  Score=105.44  Aligned_cols=106  Identities=19%  Similarity=0.378  Sum_probs=78.1

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC----CCcccccCHHHhh-cCCCEEEEeccCChhhhhcccH
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG----VSYPFYANVSGLA-ADSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~----~~~~~~~~l~e~l-~~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      .-..++|||||+|.||+.+|+.|+.+|++|.+++++....    .+.....++++++ .++|+|++|+|. ..+..++..
T Consensus        49 ~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~  127 (667)
T PLN02712         49 NTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKS  127 (667)
T ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHh
Confidence            3456799999999999999999999999999999874321    1333456788865 569999999995 567777755


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239          220 DVMTALGKEGVIINVGRGALIDEKELVHFLVR  251 (286)
Q Consensus       220 ~~l~~mk~g~ilvn~srg~~vd~~al~~al~~  251 (286)
                      -.+..++++++|+|++.-+..--+++.+.+..
T Consensus       128 l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~  159 (667)
T PLN02712        128 LPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE  159 (667)
T ss_pred             hhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC
Confidence            44467999999999975553333444444433

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.88  E-value=2.6e-09  Score=97.38  Aligned_cols=99  Identities=16%  Similarity=0.164  Sum_probs=75.9

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------------C------------cccccCHHHhhcCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------S------------YPFYANVSGLAADS  200 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~------------~~~~~~l~e~l~~a  200 (286)
                      ++|+|||+|.||..+|+.+...|++|++||++.+...                +            .....+..+.+++|
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a   84 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA   84 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence            5899999999999999999999999999998875421                0            01122223568999


Q ss_pred             CEEEEeccCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHH
Q 043239          201 DVLIVCCALTEETHHMINKDVMTALGKEGVII-NVGRGALIDEKELVHFLV  250 (286)
Q Consensus       201 DiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilv-n~srg~~vd~~al~~al~  250 (286)
                      |+|+.|+|..++.+..+-++..+.++++++|+ |+|.-+   ...+.+.+.
T Consensus        85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~  132 (295)
T PLN02545         85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQ  132 (295)
T ss_pred             CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcC
Confidence            99999999999988887777778899999886 676654   444555554

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.87  E-value=2.5e-09  Score=97.14  Aligned_cols=110  Identities=16%  Similarity=0.190  Sum_probs=81.7

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCC-----------------------------cccccCHHHhhcC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS-----------------------------YPFYANVSGLAAD  199 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~-----------------------------~~~~~~l~e~l~~  199 (286)
                      ++|+|||+|.||..+|..|...|++|++||++++....                             .....++.+.+++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~   81 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD   81 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence            47999999999999999999999999999987654211                             1124577889999


Q ss_pred             CCEEEEeccCChhhhhcccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHhCCeeEEEeecc
Q 043239          200 SDVLIVCCALTEETHHMINKDVMTALGKEGVI-INVGRGALIDEKELVHFLVRGSLVELVLMCL  262 (286)
Q Consensus       200 aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~il-vn~srg~~vd~~al~~al~~~~i~ga~lDv~  262 (286)
                      ||+|+.|+|...+.+..+-.+..+.+++++++ +|+|..++   ..+.+.+. ..-+..++..+
T Consensus        82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~-~~~r~~g~h~~  141 (288)
T PRK09260         82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTK-RPERVIAMHFF  141 (288)
T ss_pred             CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcC-CcccEEEEecC
Confidence            99999999987766655555666778999876 78877554   44555553 33334566666

>PLN02688 pyrroline-5-carboxylate reductase

Probab=98.87  E-value=8.2e-09  Score=92.55  Aligned_cols=99  Identities=21%  Similarity=0.354  Sum_probs=75.9

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCC----EEEEE-CCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhccc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGC----SIAYT-SRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMIN  218 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~----~V~~~-~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~  218 (286)
                      ++|||||+|+||.++++.|...|+    +|+++ +|+.++..     +.....+..+++++||+|++|+| .+....++ 
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl-   78 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL-   78 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence            579999999999999999998887    88888 88765432     34445678888999999999997 45566666 


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239          219 KDVMTALGKEGVIINVGRGALIDEKELVHFLVR  251 (286)
Q Consensus       219 ~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~  251 (286)
                      .+..+.++++.++|++..|  +..+.+.+.+..
T Consensus        79 ~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~  109 (266)
T PLN02688         79 TELRPLLSKDKLLVSVAAG--ITLADLQEWAGG  109 (266)
T ss_pred             HHHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence            3455677889999988655  466666665543

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=98.84  E-value=1.2e-08  Score=92.66  Aligned_cols=86  Identities=10%  Similarity=0.131  Sum_probs=70.1

Q ss_pred             HHHHHHHhccCCCEEEEECCCCCCC----------CCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCc
Q 043239          160 GSEVAKRLVPFGCSIAYTSRKKKPG----------VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEG  229 (286)
Q Consensus       160 G~~~A~~l~~~g~~V~~~~r~~~~~----------~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~  229 (286)
                      |..||++|...|++|++|||+....          .+.....+..+++++||+|++|+|..+.++.++ ...++.+++|+
T Consensus        32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga  110 (341)
T TIGR01724        32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA  110 (341)
T ss_pred             HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence            8999999999999999999875422          145566789999999999999999888888887 56889999999


Q ss_pred             EEEEcCCCcccCHHHHH
Q 043239          230 VIINVGRGALIDEKELV  246 (286)
Q Consensus       230 ilvn~srg~~vd~~al~  246 (286)
                      ++||+|+.++......+
T Consensus       111 IVID~STIsP~t~~~~~  127 (341)
T TIGR01724       111 VICNTCTVSPVVLYYSL  127 (341)
T ss_pred             EEEECCCCCHHHHHHHH
Confidence            99999876654443333

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.84  E-value=4e-09  Score=99.85  Aligned_cols=90  Identities=22%  Similarity=0.313  Sum_probs=71.3

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCC------CC-----CCCcccccCHHHhhcCCCEEEEeccCChh
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKK------KP-----GVSYPFYANVSGLAADSDVLIVCCALTEE  212 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~------~~-----~~~~~~~~~l~e~l~~aDiV~~~lp~~~~  212 (286)
                      ..|+|++|+|||+|.+|+..|..|+..|++|.+--|..      +.     ..++ ...+++|++++||+|++.+|++ .
T Consensus        32 ~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF-~v~~~~Ea~~~ADvVviLlPDt-~  109 (487)
T PRK05225         32 SYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGF-KVGTYEELIPQADLVINLTPDK-Q  109 (487)
T ss_pred             HHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCC-ccCCHHHHHHhCCEEEEcCChH-H
Confidence            56999999999999999999999999999887444432      11     1233 3468999999999999999988 3


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCC
Q 043239          213 THHMINKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       213 t~~~i~~~~l~~mk~g~ilvn~srg  237 (286)
                       .+.+.++.+++||+|+.|. .|.|
T Consensus       110 -q~~v~~~i~p~LK~Ga~L~-fsHG  132 (487)
T PRK05225        110 -HSDVVRAVQPLMKQGAALG-YSHG  132 (487)
T ss_pred             -HHHHHHHHHhhCCCCCEEE-ecCC
Confidence             6666699999999999753 4444

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.81  E-value=1.3e-08  Score=97.07  Aligned_cols=100  Identities=16%  Similarity=0.256  Sum_probs=76.1

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------------------------C-cccccCHHHhhcCCCEE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------------------------S-YPFYANVSGLAADSDVL  203 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------------------------~-~~~~~~l~e~l~~aDiV  203 (286)
                      ++|+|||+|.||..+|..|...|++|++||++.++..                        + .....++.+++++||+|
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv   80 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI   80 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence            4799999999999999999999999999998765321                        1 12335777889999999


Q ss_pred             EEeccCChh---------hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 043239          204 IVCCALTEE---------THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFL  249 (286)
Q Consensus       204 ~~~lp~~~~---------t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al  249 (286)
                      ++|+|....         ....+ +...+.+++|.++|+.|.-.+-..+.+...+
T Consensus        81 ii~vpt~~~~~~~~d~~~v~~~~-~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~  134 (411)
T TIGR03026        81 IICVPTPLKEDGSPDLSYVESAA-ETIAKHLRKGATVVLESTVPPGTTEEVVKPI  134 (411)
T ss_pred             EEEeCCCCCCCCCcChHHHHHHH-HHHHHhcCCCCEEEEeCcCCCCchHHHHHHH
Confidence            999995432         22222 3466778999999999987776777776444

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.81  E-value=1.7e-08  Score=93.34  Aligned_cols=98  Identities=19%  Similarity=0.239  Sum_probs=76.1

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-------------C------cccccCHHHhhcCCCEEEEecc
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------------S------YPFYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------------~------~~~~~~l~e~l~~aDiV~~~lp  208 (286)
                      .++|+|||+|.||..+|.+|...|++|.+|+|+.+...             +      .....++.++++++|+|++++|
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~   83 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP   83 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence            46899999999999999999999999999999754311             1      1234578888899999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCC-cccC--HHHHHHHHHh
Q 043239          209 LTEETHHMINKDVMTALGKEGVIINVGRG-ALID--EKELVHFLVR  251 (286)
Q Consensus       209 ~~~~t~~~i~~~~l~~mk~g~ilvn~srg-~~vd--~~al~~al~~  251 (286)
                      .. .+     ++.++.++++.++|+++.| ..-+  .+.+.+.+.+
T Consensus        84 ~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~  123 (328)
T PRK14618         84 SK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF  123 (328)
T ss_pred             hH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence            54 22     5566888999999999997 4333  5566666655

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.81  E-value=9.5e-09  Score=98.33  Aligned_cols=103  Identities=14%  Similarity=0.147  Sum_probs=78.0

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----Ccc----------------cccCHHHhhcCCCEEEEec
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----SYP----------------FYANVSGLAADSDVLIVCC  207 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----~~~----------------~~~~l~e~l~~aDiV~~~l  207 (286)
                      .++|||||+|.||..+|..|.+ |++|++||+++++..    +..                .+.+..+.+++||++++|+
T Consensus         6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~V   84 (425)
T PRK15182          6 EVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITV   84 (425)
T ss_pred             CCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEc
Confidence            3789999999999999999887 699999999876532    110                2334345789999999999


Q ss_pred             cCC------hhhhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239          208 ALT------EETHHMI--NKDVMTALGKEGVIINVGRGALIDEKELVHFLVR  251 (286)
Q Consensus       208 p~~------~~t~~~i--~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~  251 (286)
                      |..      ++...+.  .+...+.+++|.++|+.|+-.+-..+.++..+-.
T Consensus        85 ptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~  136 (425)
T PRK15182         85 PTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILA  136 (425)
T ss_pred             CCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHH
Confidence            955      2334444  3456788999999999999999888876554433

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.80  E-value=2.4e-08  Score=83.78  Aligned_cols=82  Identities=26%  Similarity=0.422  Sum_probs=69.7

Q ss_pred             ccCCCCEEEEEcCChH-HHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239          144 STLGGKRVGIVGLGSI-GSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM  222 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~i-G~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l  222 (286)
                      .++.|+++.|||.|.| |..+|+.|...|.+|++.+|+.         .++.+.++++|+|+++++..   . ++.++. 
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~---------~~l~~~l~~aDiVIsat~~~---~-ii~~~~-  105 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT---------KNLKEHTKQADIVIVAVGKP---G-LVKGDM-  105 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc---------hhHHHHHhhCCEEEEcCCCC---c-eecHHH-
Confidence            3589999999999997 8889999999999999998862         47888999999999998742   3 687775 


Q ss_pred             hcCCCCcEEEEcCCCcccC
Q 043239          223 TALGKEGVIINVGRGALID  241 (286)
Q Consensus       223 ~~mk~g~ilvn~srg~~vd  241 (286)
                        ++++.++||++...-+|
T Consensus       106 --~~~~~viIDla~prdvd  122 (168)
T cd01080         106 --VKPGAVVIDVGINRVPD  122 (168)
T ss_pred             --ccCCeEEEEccCCCccc
Confidence              57899999999887766

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=98.79  E-value=9.9e-09  Score=92.90  Aligned_cols=88  Identities=24%  Similarity=0.343  Sum_probs=66.3

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cc-ccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SY-PFYANVSGLAADSDVLIVCCALTEETHHMINKDVM  222 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~-~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l  222 (286)
                      ++|+|||+|.||+++|+.|+..|++|.+|+++.+...     +. ....+..+.+++||+|++|+|.. ....++ ++..
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~-~~~~~~-~~l~   78 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIG-LLLPPS-EQLI   78 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHH-HHHHHH-HHHH
Confidence            4799999999999999999999999999998765422     11 11222235678999999999943 333333 5667


Q ss_pred             hcCCCCcEEEEcCCCc
Q 043239          223 TALGKEGVIINVGRGA  238 (286)
Q Consensus       223 ~~mk~g~ilvn~srg~  238 (286)
                      +.++++++++|++.-.
T Consensus        79 ~~l~~~~ii~d~~Svk   94 (279)
T PRK07417         79 PALPPEAIVTDVGSVK   94 (279)
T ss_pred             HhCCCCcEEEeCcchH
Confidence            7789999999997755

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=98.79  E-value=1.9e-08  Score=94.75  Aligned_cols=121  Identities=16%  Similarity=0.196  Sum_probs=84.1

Q ss_pred             CcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          104 SEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       104 ~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      ....++..+-.++...|...+      .......       .-..++|+||| +|.||+++|+.|+..|+.|.+|+++. 
T Consensus        67 ~~~~~~~i~~~i~~~s~~~q~------~~~~~~~-------~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~-  132 (374)
T PRK11199         67 PPDLIEDVLRRVMRESYSSEN------DKGFKTL-------NPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD-  132 (374)
T ss_pred             CHHHHHHHHHHHHHHHHHHhH------Hhccccc-------CcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc-
Confidence            334456666666666665321      1111110       11457999999 99999999999999999999999853 


Q ss_pred             CCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 043239          183 PGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHF  248 (286)
Q Consensus       183 ~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~a  248 (286)
                             ..+.++++++||+|++|+|... +..++ ++..+ +++|++++|++.-+..-..++.+.
T Consensus       133 -------~~~~~~~~~~aDlVilavP~~~-~~~~~-~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~  188 (374)
T PRK11199        133 -------WDRAEDILADAGMVIVSVPIHL-TEEVI-ARLPP-LPEDCILVDLTSVKNAPLQAMLAA  188 (374)
T ss_pred             -------chhHHHHHhcCCEEEEeCcHHH-HHHHH-HHHhC-CCCCcEEEECCCccHHHHHHHHHh
Confidence                   1367788999999999999654 45455 34555 899999999977654444445444

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.78  E-value=2.7e-08  Score=90.39  Aligned_cols=78  Identities=19%  Similarity=0.414  Sum_probs=65.8

Q ss_pred             ccCCCCEEEEEc-CChHHHHHHHHhccCCCEEEEEC-CCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          144 STLGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTS-RKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       144 ~~l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~-r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      .++.|++|+||| .|.||++||.+|...|+.|++|+ |+.          ++++++++||+|+++++..+    .+....
T Consensus       154 i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~----------~l~e~~~~ADIVIsavg~~~----~v~~~~  219 (296)
T PRK14188        154 GDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR----------DLPAVCRRADILVAAVGRPE----MVKGDW  219 (296)
T ss_pred             CCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC----------CHHHHHhcCCEEEEecCChh----hcchhe
Confidence            368999999999 99999999999999999999994 653          58899999999999998543    444433


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 043239          222 MTALGKEGVIINVGRGA  238 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~  238 (286)
                         +|+|+++||+|--.
T Consensus       220 ---lk~GavVIDvGin~  233 (296)
T PRK14188        220 ---IKPGATVIDVGINR  233 (296)
T ss_pred             ---ecCCCEEEEcCCcc
Confidence               89999999998544

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.77  E-value=1.3e-08  Score=91.84  Aligned_cols=98  Identities=14%  Similarity=0.252  Sum_probs=76.1

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCC----EEEEECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCChhhhhccc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGC----SIAYTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALTEETHHMIN  218 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~----~V~~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~  218 (286)
                      ++|||||+|+||+++++.|...|+    +|++++|+.++..      +.....+..+++++||+|++|+|. .....++ 
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl-   80 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI-   80 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH-
Confidence            589999999999999999988774    6999998776522      333456778889999999999994 5666665 


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 043239          219 KDVMTALGKEGVIINVGRGALIDEKELVHFLV  250 (286)
Q Consensus       219 ~~~l~~mk~g~ilvn~srg~~vd~~al~~al~  250 (286)
                      ++..+.++++.++|++.-|  ++.+.|.+.+.
T Consensus        81 ~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~  110 (272)
T PRK12491         81 NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD  110 (272)
T ss_pred             HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence            4455667888999999877  56666777664

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=98.77  E-value=2e-08  Score=91.82  Aligned_cols=106  Identities=20%  Similarity=0.323  Sum_probs=85.8

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-----CCcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      -++||++.|.|||..|+-+|.++++.|++|.++.-.+-++     +++. ...++++...+|+++.+.-    ++++|..
T Consensus       206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~-V~~m~~Aa~~gDifiT~TG----nkdVi~~  280 (420)
T COG0499         206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFR-VMTMEEAAKTGDIFVTATG----NKDVIRK  280 (420)
T ss_pred             eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcE-EEEhHHhhhcCCEEEEccC----CcCccCH
Confidence            4799999999999999999999999999999988766543     2443 5679999999999998754    6889999


Q ss_pred             HHHhcCCCCcEEEEcCCCcc-cCHHHHHH-HHHhCCee
Q 043239          220 DVMTALGKEGVIINVGRGAL-IDEKELVH-FLVRGSLV  255 (286)
Q Consensus       220 ~~l~~mk~g~ilvn~srg~~-vd~~al~~-al~~~~i~  255 (286)
                      +++..||+|+++-|++.-.+ ||-..|.+ +.+...++
T Consensus       281 eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr  318 (420)
T COG0499         281 EHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVR  318 (420)
T ss_pred             HHHHhccCCeEEecccccceeccHHHHHHhhhhHhccc
Confidence            99999999999999986655 66666653 23444444

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.76  E-value=3.2e-08  Score=94.48  Aligned_cols=104  Identities=12%  Similarity=0.193  Sum_probs=77.9

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCC----cc--cccCHHHh---------------hcCCCEEEEec
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS----YP--FYANVSGL---------------AADSDVLIVCC  207 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~----~~--~~~~l~e~---------------l~~aDiV~~~l  207 (286)
                      ++|+|||+|.||..+|..|+..|++|++||+++++...    ..  ....++++               +++||+|++|+
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v   83 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV   83 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence            68999999999999999999999999999998764321    00  11233333               34799999999


Q ss_pred             cCC------hhhhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          208 ALT------EETHHMI--NKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       208 p~~------~~t~~~i--~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      |..      ++...+.  -+...+.+++|+++|+.|+-.+-..+.+...+.+.
T Consensus        84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~  136 (415)
T PRK11064         84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA  136 (415)
T ss_pred             CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            954      1112221  24567889999999999999888888888877764

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.75  E-value=4.7e-08  Score=80.18  Aligned_cols=105  Identities=23%  Similarity=0.271  Sum_probs=78.1

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCC-CEEEEECCCCCCCC------Cc----ccccCHHHhhcCCCEEEEeccCChh-
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFG-CSIAYTSRKKKPGV------SY----PFYANVSGLAADSDVLIVCCALTEE-  212 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g-~~V~~~~r~~~~~~------~~----~~~~~l~e~l~~aDiV~~~lp~~~~-  212 (286)
                      ++.+++++|+|+|.||..+++.+...| .+|.+++|+.++..      +.    ....+..++++++|+|++++|.... 
T Consensus        16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~   95 (155)
T cd01065          16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP   95 (155)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence            356789999999999999999999886 68999999865432      11    1345777788999999999997653 


Q ss_pred             hhh-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239          213 THH-MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       213 t~~-~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i  254 (286)
                      ... .+..   ..++++.+++|++..+...  .+.+++++.++
T Consensus        96 ~~~~~~~~---~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~  133 (155)
T cd01065          96 GDELPLPP---SLLKPGGVVYDVVYNPLET--PLLKEARALGA  133 (155)
T ss_pred             CCCCCCCH---HHcCCCCEEEEcCcCCCCC--HHHHHHHHCCC
Confidence            122 2222   2368999999998765443  88888887755

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.75  E-value=7.2e-08  Score=88.89  Aligned_cols=114  Identities=16%  Similarity=0.147  Sum_probs=88.2

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-------------------------CcccccCHHHhhcCCCEE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------------------------SYPFYANVSGLAADSDVL  203 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------------------------~~~~~~~l~e~l~~aDiV  203 (286)
                      ++|+|||.|.||..+|..+...|++|.+||++++...                         ......++++++++||+|
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV   87 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI   87 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence            5899999999999999999999999999999764211                         012346888999999999


Q ss_pred             EEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239          204 IVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS  265 (286)
Q Consensus       204 ~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e  265 (286)
                      +-++|...+.+..+-++..+.+++++ ++.+++. -+...++.+.++. .=+.+++=.|.+.
T Consensus        88 iEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS-~l~~s~la~~~~~-p~R~~g~HffnP~  146 (321)
T PRK07066         88 QESAPEREALKLELHERISRAAKPDA-IIASSTS-GLLPTDFYARATH-PERCVVGHPFNPV  146 (321)
T ss_pred             EECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCC-ccCHHHHHHhcCC-cccEEEEecCCcc
Confidence            99999999888888788888899998 5555555 4577788887743 3344555556444

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.74  E-value=2.9e-08  Score=90.39  Aligned_cols=110  Identities=17%  Similarity=0.204  Sum_probs=78.5

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------------C-------------cccccCHHHhhcC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------S-------------YPFYANVSGLAAD  199 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~-------------~~~~~~l~e~l~~  199 (286)
                      ++|+|||+|.||..+|..+...|++|++||++.+...                +             .....+++ .+++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~   83 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD   83 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence            5899999999999999999999999999998764321                1             11234554 5789


Q ss_pred             CCEEEEeccCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHhCCeeEEEeeccC
Q 043239          200 SDVLIVCCALTEETHHMINKDVMTALGKEGVII-NVGRGALIDEKELVHFLVRGSLVELVLMCLR  263 (286)
Q Consensus       200 aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilv-n~srg~~vd~~al~~al~~~~i~ga~lDv~~  263 (286)
                      ||+|+.|+|...+....+-++..+.++++++|+ |+|.-.   ...+.+.+.. .-+..++-.+.
T Consensus        84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~~-~~r~~g~h~~~  144 (292)
T PRK07530         84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATDR-PERFIGIHFMN  144 (292)
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCC-cccEEEeeccC
Confidence            999999999876655555466777889999887 555544   3467776532 22334555555

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.72  E-value=1.9e-08  Score=94.63  Aligned_cols=97  Identities=15%  Similarity=0.267  Sum_probs=75.3

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------Cc------ccccCHHHhhcCCCEEEEeccCC-h
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SY------PFYANVSGLAADSDVLIVCCALT-E  211 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~------~~~~~l~e~l~~aDiV~~~lp~~-~  211 (286)
                      .+.+.++.|+|+|.+|+.+++.++.+|++|.++|++.++..      +.      ....++.+.++++|+|+.+++.+ .
T Consensus       164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~  243 (370)
T TIGR00518       164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA  243 (370)
T ss_pred             CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence            36778899999999999999999999999999998764321      11      01235677889999999997542 2


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcC--CCcccC
Q 043239          212 ETHHMINKDVMTALGKEGVIINVG--RGALID  241 (286)
Q Consensus       212 ~t~~~i~~~~l~~mk~g~ilvn~s--rg~~vd  241 (286)
                      .+..+++++.+..||++++|||++  .|+.+.
T Consensus       244 ~~p~lit~~~l~~mk~g~vIvDva~d~GG~~e  275 (370)
T TIGR00518       244 KAPKLVSNSLVAQMKPGAVIVDVAIDQGGCVE  275 (370)
T ss_pred             CCCcCcCHHHHhcCCCCCEEEEEecCCCCCcc
Confidence            245578999999999999999987  455443

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK06545 prephenate dehydrogenase; Validated

Probab=98.72  E-value=2.7e-08  Score=93.30  Aligned_cols=97  Identities=20%  Similarity=0.286  Sum_probs=71.6

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc----cccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP----FYANVSGLAADSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~----~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      ++|+|||+|.||+++|+.|+..|++|.+++++.....     +..    ...++++++++||+|++|+|. ..+..++ +
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-~~~~~vl-~   78 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-DATAALL-A   78 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-HHHHHHH-H
Confidence            4799999999999999999999998888877655321     111    235678889999999999996 4566665 3


Q ss_pred             HHHh-cCCCCcEEEEcCCCcccCHHHHHH
Q 043239          220 DVMT-ALGKEGVIINVGRGALIDEKELVH  247 (286)
Q Consensus       220 ~~l~-~mk~g~ilvn~srg~~vd~~al~~  247 (286)
                      +..+ .++++++++|++.-+.-..+++.+
T Consensus        79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~  107 (359)
T PRK06545         79 ELADLELKPGVIVTDVGSVKGAILAEAEA  107 (359)
T ss_pred             HHhhcCCCCCcEEEeCccccHHHHHHHHH
Confidence            4444 488999999998776544444433

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=98.72  E-value=4.1e-08  Score=90.03  Aligned_cols=89  Identities=19%  Similarity=0.384  Sum_probs=68.3

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC-----Cc--ccccCHHHhhcCCCEEEEeccCChhhhhccc
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV-----SY--PFYANVSGLAADSDVLIVCCALTEETHHMIN  218 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~-----~~--~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~  218 (286)
                      .++|+|||+|.||..+|+.|+..|+  +|.+|+|+.+...     +.  ....++++.+++||+|++|+|.. ....++ 
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~-   83 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVA-   83 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHH-
Confidence            4689999999999999999998885  8999999865321     21  12357778889999999999953 333333 


Q ss_pred             HHHHhcCCCCcEEEEcCCCc
Q 043239          219 KDVMTALGKEGVIINVGRGA  238 (286)
Q Consensus       219 ~~~l~~mk~g~ilvn~srg~  238 (286)
                      ++..+.++++.+++|++...
T Consensus        84 ~~l~~~l~~~~iv~dvgs~k  103 (307)
T PRK07502         84 AEIAPHLKPGAIVTDVGSVK  103 (307)
T ss_pred             HHHHhhCCCCCEEEeCccch
Confidence            45667789999999997654

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.72  E-value=4.4e-08  Score=88.65  Aligned_cols=100  Identities=15%  Similarity=0.221  Sum_probs=73.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCC----CEEEEECCCCCC-C------CCcccccCHHHhhcCCCEEEEeccCChhhhh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFG----CSIAYTSRKKKP-G------VSYPFYANVSGLAADSDVLIVCCALTEETHH  215 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g----~~V~~~~r~~~~-~------~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~  215 (286)
                      .+++|+|||+|+||.++++.|...|    .+|.+++|+..+ .      .+.....+..+++++||+|++++|.. ....
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~-~~~~   80 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPK-DVAE   80 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHH-HHHH
Confidence            3579999999999999999999877    689999987532 1      13334567888899999999999943 4444


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 043239          216 MINKDVMTALGKEGVIINVGRGALIDEKELVHFLV  250 (286)
Q Consensus       216 ~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~  250 (286)
                      ++ .+..+.++++.++|++.-|  +..+.+.+.+.
T Consensus        81 vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~  112 (279)
T PRK07679         81 AL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQ  112 (279)
T ss_pred             HH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence            44 4555667889999998655  35555666553

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.71  E-value=7.9e-08  Score=82.92  Aligned_cols=105  Identities=22%  Similarity=0.358  Sum_probs=82.1

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------CcccccCHHHhhc-CCCEEEEeccCChhhhh
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SYPFYANVSGLAA-DSDVLIVCCALTEETHH  215 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~~~~~~l~e~l~-~aDiV~~~lp~~~~t~~  215 (286)
                      +.+++|++++|+|+|+||+.+|+.|..+|++|+++|++.+...      +.. ..+.++++. +||+++.|..     .+
T Consensus        23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~-~v~~~~l~~~~~Dv~vp~A~-----~~   96 (200)
T cd01075          23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGAT-VVAPEEIYSVDADVFAPCAL-----GG   96 (200)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCE-EEcchhhccccCCEEEeccc-----cc
Confidence            3468999999999999999999999999999999998765321      222 223455654 7999986653     46


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          216 MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       216 ~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      +++++.++.|+. .+++.-+.+.+.| ..-.+.|+++++.
T Consensus        97 ~I~~~~~~~l~~-~~v~~~AN~~~~~-~~~~~~L~~~Gi~  134 (200)
T cd01075          97 VINDDTIPQLKA-KAIAGAANNQLAD-PRHGQMLHERGIL  134 (200)
T ss_pred             ccCHHHHHHcCC-CEEEECCcCccCC-HhHHHHHHHCCCE
Confidence            889999999974 5788888888776 6677888888875

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.68  E-value=2e-08  Score=83.32  Aligned_cols=103  Identities=17%  Similarity=0.311  Sum_probs=71.9

Q ss_pred             EEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-------------------CcccccCHHHhhcCCCEEEEeccCC
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------------------SYPFYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------------------~~~~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      +|+|+|.|++|.++|..|...|++|..|.|+.+...                   ......+++++++++|+|++++|. 
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs-   79 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS-   79 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G-
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH-
Confidence            689999999999999999999999999999853210                   122347899999999999999994 


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCCCc----c-cCHHHHHHHHHhCCe
Q 043239          211 EETHHMINKDVMTALGKEGVIINVGRGA----L-IDEKELVHFLVRGSL  254 (286)
Q Consensus       211 ~~t~~~i~~~~l~~mk~g~ilvn~srg~----~-vd~~al~~al~~~~i  254 (286)
                      ...+.++ ++..+.++++..+|++..|=    . .-.+.+.+.+....+
T Consensus        80 ~~~~~~~-~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~  127 (157)
T PF01210_consen   80 QAHREVL-EQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRI  127 (157)
T ss_dssp             GGHHHHH-HHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGE
T ss_pred             HHHHHHH-HHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcce
Confidence            3444444 56777788999999998663    2 234444445554443

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.68  E-value=8.4e-08  Score=86.58  Aligned_cols=80  Identities=24%  Similarity=0.447  Sum_probs=66.1

Q ss_pred             cccCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.++.|++++|||. |.||++||.+|...|+.|++|...         ..++.+.+++||+|+++++.    .+++....
T Consensus       153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---------t~~l~~~~~~ADIVI~avg~----~~~v~~~~  219 (284)
T PRK14179        153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---------TRNLAEVARKADILVVAIGR----GHFVTKEF  219 (284)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC---------CCCHHHHHhhCCEEEEecCc----cccCCHHH
Confidence            44689999999999 999999999999999999998321         23789999999999999984    34465544


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 043239          222 MTALGKEGVIINVGRGA  238 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~  238 (286)
                         +|+|+++||+|--.
T Consensus       220 ---ik~GavVIDvgin~  233 (284)
T PRK14179        220 ---VKEGAVVIDVGMNR  233 (284)
T ss_pred             ---ccCCcEEEEeccee
Confidence               79999999998444

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.67  E-value=3.5e-08  Score=90.73  Aligned_cols=88  Identities=18%  Similarity=0.334  Sum_probs=69.2

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-------------------CcccccCHHHhhcCCCEEEEeccC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------------------SYPFYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------------------~~~~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      ++|+|||+|.||..+|..|...|++|.+|+|+.+...                   +.....+++++++++|+|++|+|.
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~   81 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS   81 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence            4799999999999999999999999999999754211                   122345778888999999999995


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 043239          210 TEETHHMINKDVMTALGKEGVIINVGRGA  238 (286)
Q Consensus       210 ~~~t~~~i~~~~l~~mk~g~ilvn~srg~  238 (286)
                       ..+..++ +...+.++++.++|+++.|-
T Consensus        82 -~~~~~v~-~~l~~~~~~~~~vi~~~ngv  108 (325)
T PRK00094         82 -QALREVL-KQLKPLLPPDAPIVWATKGI  108 (325)
T ss_pred             -HHHHHHH-HHHHhhcCCCCEEEEEeecc
Confidence             4556555 35666778899999997663

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.66  E-value=3.8e-08  Score=96.03  Aligned_cols=102  Identities=15%  Similarity=0.182  Sum_probs=77.0

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------------------------C-cccccCHHHhhcCCCEE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------------------------S-YPFYANVSGLAADSDVL  203 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------------------------~-~~~~~~l~e~l~~aDiV  203 (286)
                      ++|||||+|.||..+|..|...|++|++||++++...                        + .....++.+++++||+|
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V   84 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI   84 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence            4899999999999999999999999999999865421                        1 23356888899999999


Q ss_pred             EEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          204 IVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       204 ~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      +.++|...+.+..+-++.-+.++++++ |.+++.++ ....+.+.+...
T Consensus        85 ieavpe~~~vk~~l~~~l~~~~~~~~i-I~SsTsgi-~~s~l~~~~~~~  131 (495)
T PRK07531         85 QESVPERLDLKRRVLAEIDAAARPDAL-IGSSTSGF-LPSDLQEGMTHP  131 (495)
T ss_pred             EEcCcCCHHHHHHHHHHHHhhCCCCcE-EEEcCCCC-CHHHHHhhcCCc
Confidence            999998876666554455556777764 55555554 355777777543

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.66  E-value=1e-08  Score=81.96  Aligned_cols=103  Identities=17%  Similarity=0.317  Sum_probs=61.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEE-EECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIA-YTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~-~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      ...+|+|||.|++|..+++.|...|+.|. +++|+.+...      +.....++.|+++++|++++++|++ ....+ -+
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~v-a~   86 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEV-AE   86 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHH-HH
T ss_pred             CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHH-HH
Confidence            45699999999999999999999999986 4677764321      2234567889999999999999965 44433 34


Q ss_pred             HHHhc--CCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 043239          220 DVMTA--LGKEGVIINVGRGALIDEKELVHFLVRGS  253 (286)
Q Consensus       220 ~~l~~--mk~g~ilvn~srg~~vd~~al~~al~~~~  253 (286)
                      ++...  .++|.+++-+| |. ...+-|..+-+.|-
T Consensus        87 ~La~~~~~~~g~iVvHtS-Ga-~~~~vL~p~~~~Ga  120 (127)
T PF10727_consen   87 QLAQYGAWRPGQIVVHTS-GA-LGSDVLAPARERGA  120 (127)
T ss_dssp             HHHCC--S-TT-EEEES--SS---GGGGHHHHHTT-
T ss_pred             HHHHhccCCCCcEEEECC-CC-ChHHhhhhHHHCCC
Confidence            44444  68999999984 32 33334444444443

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.64  E-value=1.9e-08  Score=81.34  Aligned_cols=94  Identities=21%  Similarity=0.326  Sum_probs=71.7

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCE-EEEECCCCCCCC------C-----cccccCHHHhhcCCCEEEEeccCChh
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKKPGV------S-----YPFYANVSGLAADSDVLIVCCALTEE  212 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~-V~~~~r~~~~~~------~-----~~~~~~l~e~l~~aDiV~~~lp~~~~  212 (286)
                      +++|+++.|||.|.+|+.++..|...|++ |++++|+.++..      +     .....++.+.+.++|+|+.+.|..  
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~--   86 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSG--   86 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTT--
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCC--
Confidence            68999999999999999999999999995 999999876532      1     123566777889999999998754  


Q ss_pred             hhhcccHHHHhcCCCCc-EEEEcCCCcccC
Q 043239          213 THHMINKDVMTALGKEG-VIINVGRGALID  241 (286)
Q Consensus       213 t~~~i~~~~l~~mk~g~-ilvn~srg~~vd  241 (286)
                       ...+.++.++..++.. +++|++...-|+
T Consensus        87 -~~~i~~~~~~~~~~~~~~v~Dla~Pr~i~  115 (135)
T PF01488_consen   87 -MPIITEEMLKKASKKLRLVIDLAVPRDID  115 (135)
T ss_dssp             -STSSTHHHHTTTCHHCSEEEES-SS-SB-
T ss_pred             -CcccCHHHHHHHHhhhhceeccccCCCCC
Confidence             3378888887665544 999998765444

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK08507 prephenate dehydrogenase; Validated

Probab=98.63  E-value=6.7e-08  Score=87.24  Aligned_cols=95  Identities=15%  Similarity=0.298  Sum_probs=67.8

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC-----Ccc-cccCHHHhhcCCCEEEEeccCChhhhhcccHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV-----SYP-FYANVSGLAADSDVLIVCCALTEETHHMINKD  220 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~-----~~~-~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~  220 (286)
                      ++|+|||+|.||+++|+.|+..|+  +|++++++.+...     +.. ...+..++. +||+|++|+|.. ....++ .+
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~-~~~~~~-~~   77 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVD-AIIEIL-PK   77 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHH-HHHHHH-HH
Confidence            479999999999999999998885  7899998765421     221 234667765 599999999954 344444 45


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239          221 VMTALGKEGVIINVGRGALIDEKELVHFLVR  251 (286)
Q Consensus       221 ~l~~mk~g~ilvn~srg~~vd~~al~~al~~  251 (286)
                      ..+ ++++++++|++.-    ...+.+.+.+
T Consensus        78 l~~-l~~~~iv~d~gs~----k~~i~~~~~~  103 (275)
T PRK08507         78 LLD-IKENTTIIDLGST----KAKIIESVPK  103 (275)
T ss_pred             Hhc-cCCCCEEEECccc----hHHHHHHHHH
Confidence            666 8899999998553    3445555543

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.62  E-value=8.1e-08  Score=93.94  Aligned_cols=113  Identities=11%  Similarity=0.166  Sum_probs=85.0

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------------C-------------cccccCHHHhhcC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------S-------------YPFYANVSGLAAD  199 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~-------------~~~~~~l~e~l~~  199 (286)
                      ++|||||+|.||..||..+...|++|++||++.+...                +             .....++++ +++
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~   86 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD   86 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence            5799999999999999999999999999999876422                1             123456655 579


Q ss_pred             CCEEEEeccCChhhhhcccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCC
Q 043239          200 SDVLIVCCALTEETHHMINKDVMTALGKEGVI-INVGRGALIDEKELVHFLVRGSLVELVLMCLRTSL  266 (286)
Q Consensus       200 aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~il-vn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~  266 (286)
                      ||+|+-++|...+.+..+-.+.-..++++++| +|+|.-++-   .+..++.. .=+..++..|.+-+
T Consensus        87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~-p~r~~G~hff~Pa~  150 (507)
T PRK08268         87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKH-PERVAGLHFFNPVP  150 (507)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCC-cccEEEEeecCCcc
Confidence            99999999999888887766666667899998 589877763   56666543 22245677776443

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.62  E-value=1.5e-07  Score=87.14  Aligned_cols=122  Identities=14%  Similarity=0.196  Sum_probs=101.1

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------CcccccCHHHh---hcCCCEEEEeccCChhhhh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------SYPFYANVSGL---AADSDVLIVCCALTEETHH  215 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------~~~~~~~l~e~---l~~aDiV~~~lp~~~~t~~  215 (286)
                      ..||+||+|.||+.+|......|++|.+|+|+.++.+          ....+.+++|+   ++.-.-|++++........
T Consensus         4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~   83 (473)
T COG0362           4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA   83 (473)
T ss_pred             cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence            4799999999999999999999999999999987632          23345677765   5667788888765533355


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCC
Q 043239          216 MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRS  271 (286)
Q Consensus       216 ~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~  271 (286)
                      +| ++.+++|.+|-++||-+...--|+....++|.+..|.+.+.=|...|..+..+
T Consensus        84 ~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~G  138 (473)
T COG0362          84 VI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHG  138 (473)
T ss_pred             HH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccC
Confidence            55 57899999999999999999999999999999999999999999999644443

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.62  E-value=1.3e-07  Score=85.29  Aligned_cols=80  Identities=18%  Similarity=0.381  Sum_probs=67.9

Q ss_pred             cccCCCCEEEEEcCChH-HHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLGSI-GSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~i-G~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.++.|+++.|||.|.+ |+.+|..|...|++|+++...         ..++.+.+++||+|+++++    +.++++.  
T Consensus       153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~---------t~~l~~~~~~ADIVV~avG----~~~~i~~--  217 (285)
T PRK14189        153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK---------TRDLAAHTRQADIVVAAVG----KRNVLTA--  217 (285)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC---------CCCHHHHhhhCCEEEEcCC----CcCccCH--
Confidence            34689999999999999 999999999999999886532         2478899999999999998    4567877  


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 043239          222 MTALGKEGVIINVGRGA  238 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~  238 (286)
                       +++|+|+++||+|.-.
T Consensus       218 -~~ik~gavVIDVGin~  233 (285)
T PRK14189        218 -DMVKPGATVIDVGMNR  233 (285)
T ss_pred             -HHcCCCCEEEEccccc
Confidence             4479999999998654

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.61  E-value=1.7e-07  Score=85.29  Aligned_cols=113  Identities=15%  Similarity=0.185  Sum_probs=80.5

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-------------------Cc-------------ccccCHHHh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------------------SY-------------PFYANVSGL  196 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------------------~~-------------~~~~~l~e~  196 (286)
                      ++|+|||.|.||..+|..+...|++|+++|++.+...                   +.             ....++ +.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~   82 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES   82 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence            5899999999999999999999999999998765321                   00             112344 56


Q ss_pred             hcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239          197 AADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS  265 (286)
Q Consensus       197 l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e  265 (286)
                      +++||+|+.++|...+....+-++.-+.++++++|++...|  +....+.+.+.. .-+..++..+.+.
T Consensus        83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~-~~r~ig~hf~~P~  148 (291)
T PRK06035         83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALER-KDRFIGMHWFNPA  148 (291)
T ss_pred             hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCC-cccEEEEecCCCc
Confidence            78999999999977654444445566678899998877665  466777777743 2334556666543

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.60  E-value=1.2e-07  Score=92.70  Aligned_cols=113  Identities=12%  Similarity=0.132  Sum_probs=84.4

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------------C-------------cccccCHHHhhcC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------S-------------YPFYANVSGLAAD  199 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~-------------~~~~~~l~e~l~~  199 (286)
                      ++|||||+|.||..||..+...|++|++||++.+...                +             .....++++ +++
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~   84 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD   84 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence            5799999999999999999999999999999876421                1             112456655 579


Q ss_pred             CCEEEEeccCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCC
Q 043239          200 SDVLIVCCALTEETHHMINKDVMTALGKEGVII-NVGRGALIDEKELVHFLVRGSLVELVLMCLRTSL  266 (286)
Q Consensus       200 aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilv-n~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~  266 (286)
                      ||+|+.|+|...+.+..+-.+.-..++++++|. |+|.-++   ..+.+++. ..-+..++..|.+-|
T Consensus        85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~-~p~r~~G~HFf~Pap  148 (503)
T TIGR02279        85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLA-RPERVAGLHFFNPAP  148 (503)
T ss_pred             CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcC-cccceEEEeccCccc
Confidence            999999999888887777666666678888765 6655544   45666664 344567788887554

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=98.60  E-value=7e-08  Score=86.52  Aligned_cols=90  Identities=17%  Similarity=0.340  Sum_probs=76.2

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-----CCcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      .+.||.+.|.|||.+|+.+|+.|+++|.+|++....+-.+     ++++ ..+++|++++.|+++.+.    .++.+|..
T Consensus       211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~-V~tm~ea~~e~difVTtT----Gc~dii~~  285 (434)
T KOG1370|consen  211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYE-VTTLEEAIREVDIFVTTT----GCKDIITG  285 (434)
T ss_pred             eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccE-eeeHHHhhhcCCEEEEcc----CCcchhhH
Confidence            3789999999999999999999999999999887655332     2333 568999999999998864    47889999


Q ss_pred             HHHhcCCCCcEEEEcCCCcc
Q 043239          220 DVMTALGKEGVIINVGRGAL  239 (286)
Q Consensus       220 ~~l~~mk~g~ilvn~srg~~  239 (286)
                      ++|.+||+++++.|++.-.+
T Consensus       286 ~H~~~mk~d~IvCN~Ghfd~  305 (434)
T KOG1370|consen  286 EHFDQMKNDAIVCNIGHFDT  305 (434)
T ss_pred             HHHHhCcCCcEEeccccccc
Confidence            99999999999999986543

>PRK07680 late competence protein ComER; Validated

Probab=98.60  E-value=1.1e-07  Score=85.68  Aligned_cols=98  Identities=14%  Similarity=0.355  Sum_probs=73.9

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCC----EEEEECCCCCCCC-------CcccccCHHHhhcCCCEEEEeccCChhhhhcc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGC----SIAYTSRKKKPGV-------SYPFYANVSGLAADSDVLIVCCALTEETHHMI  217 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~----~V~~~~r~~~~~~-------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i  217 (286)
                      ++|+|||+|.||+.+++.|...|.    +|.+++|+.++..       +.....+..+++.++|+|++++|. .....++
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p-~~~~~vl   79 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKP-LDIYPLL   79 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCH-HHHHHHH
Confidence            379999999999999999988773    7899999865421       233456788888999999999973 3455554


Q ss_pred             cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 043239          218 NKDVMTALGKEGVIINVGRGALIDEKELVHFLV  250 (286)
Q Consensus       218 ~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~  250 (286)
                       ++..+.++++.++|+++-|  +..+.|.+.+.
T Consensus        80 -~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~  109 (273)
T PRK07680         80 -QKLAPHLTDEHCLVSITSP--ISVEQLETLVP  109 (273)
T ss_pred             -HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence             4455677888999999854  36777776665

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.60  E-value=1.2e-07  Score=85.47  Aligned_cols=103  Identities=23%  Similarity=0.327  Sum_probs=77.5

Q ss_pred             CCEEEEEcCChHHHHHHHHhcc--CCCEEE-EECCCCCCCC------C-cccccCHHHhhcCCCEEEEeccCChhhhhcc
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVP--FGCSIA-YTSRKKKPGV------S-YPFYANVSGLAADSDVLIVCCALTEETHHMI  217 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~--~g~~V~-~~~r~~~~~~------~-~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i  217 (286)
                      .++|||||+|.||+.+++.+..  .++++. +++|++++..      + ...+.+++++++++|+|++|+|.... .. +
T Consensus         6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h-~e-~   83 (271)
T PRK13302          6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL-RA-I   83 (271)
T ss_pred             eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH-HH-H
Confidence            4799999999999999999986  478875 7788765432      2 23467899999999999999985422 21 2


Q ss_pred             cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          218 NKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       218 ~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                         ....++.|.-++..+.+.+.+.++|.++.++++..
T Consensus        84 ---~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~  118 (271)
T PRK13302         84 ---VEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ  118 (271)
T ss_pred             ---HHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence               23334667666777899888899999999987765

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.60  E-value=1.5e-07  Score=85.57  Aligned_cols=112  Identities=13%  Similarity=0.152  Sum_probs=78.8

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------------------------------CcccccCHHHhhc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------------------------------SYPFYANVSGLAA  198 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------------------------------~~~~~~~l~e~l~  198 (286)
                      ++|+|||.|.||..+|..+...|++|++|+++.+...                              ......+++++++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~   83 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK   83 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence            5899999999999999999999999999998764211                              0112467888899


Q ss_pred             CCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccC
Q 043239          199 DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLR  263 (286)
Q Consensus       199 ~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~  263 (286)
                      +||+|+.|+|...+....+-++..+.++++++|++.+.+  +....+.+.+.. .-+..++-.|.
T Consensus        84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~-~~r~vg~Hf~~  145 (287)
T PRK08293         84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGR-PEKFLALHFAN  145 (287)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCC-cccEEEEcCCC
Confidence            999999999976555544445666778889888543332  345566666543 22344444443

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.59  E-value=1.2e-07  Score=86.91  Aligned_cols=100  Identities=12%  Similarity=0.175  Sum_probs=70.2

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------C--------------cccccCHHHhhcCCCEEE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------S--------------YPFYANVSGLAADSDVLI  204 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------~--------------~~~~~~l~e~l~~aDiV~  204 (286)
                      ++|+|||+|.||..+|..|...|++|++++++.+...          +              .....++.+++++||+|+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi   84 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI   84 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence            5899999999999999999999999999998764321          0              112356778889999999


Q ss_pred             EeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 043239          205 VCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLV  250 (286)
Q Consensus       205 ~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~  250 (286)
                      +|+|...+....+-.+.-..++++++++....|  +....+.+.+.
T Consensus        85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~  128 (311)
T PRK06130         85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVT  128 (311)
T ss_pred             EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence            999976543333333444456777766533333  34567777764

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.57  E-value=1.4e-07  Score=86.54  Aligned_cols=103  Identities=13%  Similarity=0.140  Sum_probs=72.3

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------------C-------------cccccCHHHhhcC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------S-------------YPFYANVSGLAAD  199 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~-------------~~~~~~l~e~l~~  199 (286)
                      ++|+|||+|.||.++|..|...|++|++||++++...                +             .....++.+++++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~   82 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD   82 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence            4799999999999999999999999999999864211                1             1234688888999


Q ss_pred             CCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 043239          200 SDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGS  253 (286)
Q Consensus       200 aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~  253 (286)
                      ||+|+.++|...+....+-++.-+..++..+ +..+.. ......+.+.+....
T Consensus        83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~i-i~ssts-~~~~~~la~~~~~~~  134 (308)
T PRK06129         83 ADYVQESAPENLELKRALFAELDALAPPHAI-LASSTS-ALLASAFTEHLAGRE  134 (308)
T ss_pred             CCEEEECCcCCHHHHHHHHHHHHHhCCCcce-EEEeCC-CCCHHHHHHhcCCcc
Confidence            9999999997755444443333333444444 443333 355677888775533

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.56  E-value=1e-07  Score=86.68  Aligned_cols=113  Identities=19%  Similarity=0.240  Sum_probs=82.5

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------------Cc-------------ccccCHHHhhcC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------SY-------------PFYANVSGLAAD  199 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~~-------------~~~~~l~e~l~~  199 (286)
                      ++|||||.|.||..+|..+...|++|+.||++++...                +.             ....++ +.+++
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~   84 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD   84 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence            3899999999999999999999999999999876421                10             123566 55899


Q ss_pred             CCEEEEeccCChhhhhcccHHHHhcC-CCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239          200 SDVLIVCCALTEETHHMINKDVMTAL-GKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS  265 (286)
Q Consensus       200 aDiV~~~lp~~~~t~~~i~~~~l~~m-k~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e  265 (286)
                      ||+|+-|+|.+.+.+..+-.+.-+.+ +++++|++.+.+-.+  .++..++.. .=+..++..|.+.
T Consensus        85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~--~~la~~~~~-~~r~~g~hf~~P~  148 (286)
T PRK07819         85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPI--MKLAAATKR-PGRVLGLHFFNPV  148 (286)
T ss_pred             CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCH--HHHHhhcCC-CccEEEEecCCCc
Confidence            99999999999888877766555555 899999877655444  444444432 2234567777643

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.54  E-value=1.8e-07  Score=83.71  Aligned_cols=98  Identities=15%  Similarity=0.288  Sum_probs=73.1

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCE---EEEECCCCCCCC-------CcccccCHHHhhcCCCEEEEeccCChhhhhccc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCS---IAYTSRKKKPGV-------SYPFYANVSGLAADSDVLIVCCALTEETHHMIN  218 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~---V~~~~r~~~~~~-------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~  218 (286)
                      ++|||||+|+||+++++.|...|..   +.+++|+.++..       +.....+..++++++|+|++++| .+....++.
T Consensus         1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~   79 (258)
T PRK06476          1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLR   79 (258)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHH
Confidence            3799999999999999999887753   578898765422       23345688888999999999999 344555543


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          219 KDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       219 ~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      .  + .++++.++|+++  .-+..+.|.+.+..+
T Consensus        80 ~--l-~~~~~~~vis~~--ag~~~~~l~~~~~~~  108 (258)
T PRK06476         80 A--L-RFRPGQTVISVI--AATDRAALLEWIGHD  108 (258)
T ss_pred             H--h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence            2  2 257889999986  347888888887654

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.53  E-value=4.4e-07  Score=82.16  Aligned_cols=111  Identities=13%  Similarity=0.166  Sum_probs=78.5

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------------C-------------cccccCHHHhhcC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------S-------------YPFYANVSGLAAD  199 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~-------------~~~~~~l~e~l~~  199 (286)
                      ++|+|||+|.||..+|..+...|++|+++|++++...                +             .....+.+ .+++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~   82 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD   82 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            4799999999999999999999999999998765431                1             01133454 4789


Q ss_pred             CCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccC
Q 043239          200 SDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLR  263 (286)
Q Consensus       200 aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~  263 (286)
                      ||+|+.|+|...+.+.-+-++..+.++++++++....|  +....+.+.+... -+..++--+.
T Consensus        83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~~-~r~ig~h~~~  143 (282)
T PRK05808         83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKRP-DKVIGMHFFN  143 (282)
T ss_pred             CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCCC-cceEEeeccC
Confidence            99999999977776655555677778999988443333  5566888877432 2344454444

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.51  E-value=1.3e-07  Score=82.35  Aligned_cols=130  Identities=14%  Similarity=0.199  Sum_probs=91.7

Q ss_pred             CCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHh--ccCCCEEE-EEC
Q 043239          102 AFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRL--VPFGCSIA-YTS  178 (286)
Q Consensus       102 ~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l--~~~g~~V~-~~~  178 (286)
                      ....+.++|.+..++...|++..         |.           ..++++|+|+|.+|+.+++.+  ...|+++. ++|
T Consensus        58 ~~G~~~~gy~v~~l~~~~~~~l~---------~~-----------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D  117 (213)
T PRK05472         58 EFGKRGVGYNVEELLEFIEKILG---------LD-----------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFD  117 (213)
T ss_pred             hcCCCCCCeeHHHHHHHHHHHhC---------CC-----------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEE
Confidence            45567778999999998888641         11           245899999999999999863  45788876 466


Q ss_pred             CCCCCCC----C--cccccCHHHhhcC--CCEEEEeccCChhh---hhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 043239          179 RKKKPGV----S--YPFYANVSGLAAD--SDVLIVCCALTEET---HHMINKDVMTALGKEGVIINVGRGALIDEKELVH  247 (286)
Q Consensus       179 r~~~~~~----~--~~~~~~l~e~l~~--aDiV~~~lp~~~~t---~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~  247 (286)
                      ++++...    +  .....++.+++++  .|++++++|.....   ..+.......-+...++.+|+.+|.+|+..+|..
T Consensus       118 ~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~  197 (213)
T PRK05472        118 VDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTV  197 (213)
T ss_pred             CChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHH
Confidence            6543321    1  1224567777755  99999999976542   2222222334456678899999999999999999


Q ss_pred             HHHh
Q 043239          248 FLVR  251 (286)
Q Consensus       248 al~~  251 (286)
                      +|..
T Consensus       198 ~l~~  201 (213)
T PRK05472        198 ELQT  201 (213)
T ss_pred             HHHH
Confidence            8864

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.50  E-value=4.6e-07  Score=81.92  Aligned_cols=79  Identities=25%  Similarity=0.442  Sum_probs=66.8

Q ss_pred             ccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239          144 STLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM  222 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l  222 (286)
                      .++.|+++.|||.|. +|+.+|..|...|++|+++.+..         .++.+.+++||+|+++++.    .+++.++. 
T Consensus       154 i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t---------~~l~~~~~~ADIVIsAvg~----p~~i~~~~-  219 (286)
T PRK14175        154 IDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS---------KDMASYLKDADVIVSAVGK----PGLVTKDV-  219 (286)
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---------hhHHHHHhhCCEEEECCCC----CcccCHHH-
Confidence            368999999999999 99999999999999998877532         3788999999999999873    44677764 


Q ss_pred             hcCCCCcEEEEcCCCc
Q 043239          223 TALGKEGVIINVGRGA  238 (286)
Q Consensus       223 ~~mk~g~ilvn~srg~  238 (286)
                        +|+|+++||+|--.
T Consensus       220 --vk~gavVIDvGi~~  233 (286)
T PRK14175        220 --VKEGAVIIDVGNTP  233 (286)
T ss_pred             --cCCCcEEEEcCCCc
Confidence              68999999998543

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.50  E-value=3.9e-07  Score=86.29  Aligned_cols=103  Identities=13%  Similarity=0.121  Sum_probs=76.2

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC---------------------Cccc--ccCHHHhhcCCCEEEE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV---------------------SYPF--YANVSGLAADSDVLIV  205 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~---------------------~~~~--~~~l~e~l~~aDiV~~  205 (286)
                      ++|+|||+|.||..+|..+.. |++|+++|++.++..                     ....  ..+..+++++||+|++
T Consensus         1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii   79 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII   79 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence            479999999999999987765 999999998876421                     0111  1235677899999999


Q ss_pred             eccCCh----------hhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239          206 CCALTE----------ETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       206 ~lp~~~----------~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i  254 (286)
                      |+|...          ..+..+ +...+ +++|.++|+.|+-.+=..+.+.+.+.+..+
T Consensus        80 ~Vpt~~~~k~~~~dl~~v~~v~-~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v  136 (388)
T PRK15057         80 ATPTDYDPKTNYFNTSSVESVI-KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENI  136 (388)
T ss_pred             eCCCCCccCCCCcChHHHHHHH-HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcE
Confidence            999541          112222 33444 799999999999999899999988776443

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.48  E-value=4.2e-07  Score=78.08  Aligned_cols=86  Identities=22%  Similarity=0.317  Sum_probs=65.3

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC--------CcccccCHHHhhcCCCEEEEeccCChhhhhcccHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV--------SYPFYANVSGLAADSDVLIVCCALTEETHHMINKD  220 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~  220 (286)
                      ++++|+|.|+||..+|++|.+.|++|.+-+|+..+..        ......+.+++.+.+|+|++++|.. ....+ .++
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~-a~~~v-~~~   79 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFE-AIPDV-LAE   79 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHH-HHHhH-HHH
Confidence            6899999999999999999999999988766554321        1123457888999999999999964 33333 355


Q ss_pred             HHhcCCCCcEEEEcCCC
Q 043239          221 VMTALGKEGVIINVGRG  237 (286)
Q Consensus       221 ~l~~mk~g~ilvn~srg  237 (286)
                      ....+. |.++||+.-.
T Consensus        80 l~~~~~-~KIvID~tnp   95 (211)
T COG2085          80 LRDALG-GKIVIDATNP   95 (211)
T ss_pred             HHHHhC-CeEEEecCCC
Confidence            666565 8899999764

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.48  E-value=8.2e-07  Score=80.35  Aligned_cols=99  Identities=17%  Similarity=0.329  Sum_probs=72.6

Q ss_pred             CEEEEEcCChHHHHHHHHhccCC----CEEEEECCCCCCC-------C-CcccccCHHHhhcCCCEEEEeccCChhhhhc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFG----CSIAYTSRKKKPG-------V-SYPFYANVSGLAADSDVLIVCCALTEETHHM  216 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g----~~V~~~~r~~~~~-------~-~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~  216 (286)
                      ++|+|||+|+||+++++.|...|    .+|.+++|+....       . ......+..++++++|+|++|+|. .....+
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp-~~~~~v   80 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPP-LAVLPL   80 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCH-HHHHHH
Confidence            47999999999999999998877    6899888764321       1 112246778889999999999993 334444


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239          217 INKDVMTALGKEGVIINVGRGALIDEKELVHFLVR  251 (286)
Q Consensus       217 i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~  251 (286)
                      + ++..+.++++.++|.+.-|  +..+.|-+.+..
T Consensus        81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~  112 (277)
T PRK06928         81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITPG  112 (277)
T ss_pred             H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence            4 3444567788899999877  666677777643

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=98.44  E-value=1.2e-06  Score=65.08  Aligned_cols=67  Identities=24%  Similarity=0.444  Sum_probs=56.0

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccC-CCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPF-GCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM  222 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~-g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l  222 (286)
                      ..+.+++++|+|.|.+|+.+++.+... +.+|.+++|                     |+++.+.+.    ...+.++..
T Consensus        19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r---------------------di~i~~~~~----~~~~~~~~~   73 (86)
T cd05191          19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR---------------------DILVTATPA----GVPVLEEAT   73 (86)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC---------------------CEEEEcCCC----CCCchHHHH
Confidence            347889999999999999999999998 568999988                     999998763    344555567


Q ss_pred             hcCCCCcEEEEcC
Q 043239          223 TALGKEGVIINVG  235 (286)
Q Consensus       223 ~~mk~g~ilvn~s  235 (286)
                      ..++++++++|++
T Consensus        74 ~~~~~~~~v~~~a   86 (86)
T cd05191          74 AKINEGAVVIDLA   86 (86)
T ss_pred             HhcCCCCEEEecC
Confidence            8889999999874

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.42  E-value=3.1e-06  Score=82.32  Aligned_cols=181  Identities=12%  Similarity=0.129  Sum_probs=106.6

Q ss_pred             CceEEEEeCCCCCCHHHhccCCC-ccEEEEcCCCCCcCChhHHhhcCeEEEecCCCC----CcChHHHHHHHHHHHHhcc
Q 043239           48 SVRAILCLGPSPLTSDTLSLLPA-LEIVVGSTAGIDHVDLQECRRRGILVTNAGNAF----SEDGADYVVGLLVDVLRRV  122 (286)
Q Consensus        48 ~~d~i~~~~~~~~~~~~l~~~~~-Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~----~~~vAE~~l~~~L~~~R~~  122 (286)
                      ++|+|+.-  .+.+++.++.+.. --+|+.....-|.=-++.+.+++|++.......    +..+--+.-..-++.+|-+
T Consensus        64 ~adiIlkV--~~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAGy~Av  141 (511)
T TIGR00561        64 QSDIILKV--NAPSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAGYRAI  141 (511)
T ss_pred             cCCEEEEe--CCCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHHHHHH
Confidence            56777732  2234555666654 445555554444334577889999987633111    1111101111112333333


Q ss_pred             hHHHHHHHcCCCC-CCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc-------
Q 043239          123 SSIDRFVRNGLWP-DHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF-------  189 (286)
Q Consensus       123 ~~~~~~~~~~~w~-~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~-------  189 (286)
                      .+..+...  ++. ... -..| .+.+.++.|+|+|.+|...++.++.+|.+|.+++++..+..     +...       
T Consensus       142 i~Aa~~lg--r~~~g~~-taag-~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e  217 (511)
T TIGR00561       142 IEAAHEFG--RFFTGQI-TAAG-KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKE  217 (511)
T ss_pred             HHHHHHhh--hhcCCce-ecCC-CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccc
Confidence            33322221  111 010 0112 45678999999999999999999999999999988764321     1110       


Q ss_pred             ----------ccC----------HHHhhcCCCEEEEec--cCChhhhhcccHHHHhcCCCCcEEEEcC
Q 043239          190 ----------YAN----------VSGLAADSDVLIVCC--ALTEETHHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       190 ----------~~~----------l~e~l~~aDiV~~~l--p~~~~t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                                ..+          +.+.++++|+|+.++  |..+ ...++.++.++.||+|+++||++
T Consensus       218 ~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA  284 (511)
T TIGR00561       218 EGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLA  284 (511)
T ss_pred             cccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEee
Confidence                      001          445678999998876  3322 33578999999999999999997

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.41  E-value=4.8e-07  Score=79.00  Aligned_cols=89  Identities=19%  Similarity=0.219  Sum_probs=63.8

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC-------------Cc---ccccCHHHhhcCCCEEEEeccCCh
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------------SY---PFYANVSGLAADSDVLIVCCALTE  211 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------------~~---~~~~~l~e~l~~aDiV~~~lp~~~  211 (286)
                      ++|+||| .|.||+.+++.|...|++|.+++|+.++..             +.   ....+..+.++++|+|++++|.. 
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~-   79 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD-   79 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH-
Confidence            4799997 899999999999999999999998765421             10   01236678899999999999943 


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 043239          212 ETHHMINKDVMTALGKEGVIINVGRGALI  240 (286)
Q Consensus       212 ~t~~~i~~~~l~~mk~g~ilvn~srg~~v  240 (286)
                      ....++ ++....++ +.++|++.-|--.
T Consensus        80 ~~~~~l-~~l~~~l~-~~vvI~~~ngi~~  106 (219)
T TIGR01915        80 HVLKTL-ESLRDELS-GKLVISPVVPLAS  106 (219)
T ss_pred             HHHHHH-HHHHHhcc-CCEEEEeccCcee
Confidence            334333 23333344 4899999877433

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=98.39  E-value=1.1e-06  Score=89.79  Aligned_cols=101  Identities=19%  Similarity=0.253  Sum_probs=74.7

Q ss_pred             CEEEEEcCChHHHHHHHHhccCC--CEEEEECCCCCCCC-----Ccc--cccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFG--CSIAYTSRKKKPGV-----SYP--FYANVSGLAADSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g--~~V~~~~r~~~~~~-----~~~--~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      ++|+|||+|.||.++++.++..|  .+|++|+++.++..     +..  ...++.++++++|+|++|+|.. ....++ +
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~   81 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A   81 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence            68999999999999999999888  48999999876421     221  2456788899999999999953 444444 3


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239          220 DVMTALGKEGVIINVGRGALIDEKELVHFLVR  251 (286)
Q Consensus       220 ~~l~~mk~g~ilvn~srg~~vd~~al~~al~~  251 (286)
                      +..+.++++.+++|++..+....+.+.+.+..
T Consensus        82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~  113 (735)
T PRK14806         82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGE  113 (735)
T ss_pred             HHHHhcCCCcEEEEcCCCchHHHHHHHHhccc
Confidence            45566788999999987654445555555543

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.38  E-value=3.1e-07  Score=78.29  Aligned_cols=103  Identities=15%  Similarity=0.243  Sum_probs=67.9

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------------C-------------cccccCHHHhhcCCCEE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------------S-------------YPFYANVSGLAADSDVL  203 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------------~-------------~~~~~~l~e~l~~aDiV  203 (286)
                      |+|+|+|+|.+|..+|..|...|++|+++|.+.+...            +             .....+..+.+++||++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~   80 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV   80 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence            6899999999999999999999999999998765210            0             12235677889999999


Q ss_pred             EEeccCChhhhhcc--------cHHHHhcCCCCcEEEEcCCCcccCHHHHH-HHHHh
Q 043239          204 IVCCALTEETHHMI--------NKDVMTALGKEGVIINVGRGALIDEKELV-HFLVR  251 (286)
Q Consensus       204 ~~~lp~~~~t~~~i--------~~~~l~~mk~g~ilvn~srg~~vd~~al~-~al~~  251 (286)
                      ++|+|......+..        -+...+.++++.++|.-|+-.+=..+.+. ..|++
T Consensus        81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~  137 (185)
T PF03721_consen   81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEK  137 (185)
T ss_dssp             EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHH
T ss_pred             EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhh
Confidence            99998332222221        23456678999999999999887777444 44554

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=98.37  E-value=8.3e-07  Score=79.79  Aligned_cols=85  Identities=24%  Similarity=0.336  Sum_probs=68.7

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC------CCcccccCHHHhhcCCCEEEEeccCChhhhhccc
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG------VSYPFYANVSGLAADSDVLIVCCALTEETHHMIN  218 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~------~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~  218 (286)
                      -|+||+|+|||||+-|.+-|..|+..|.+|.+--|.....      .++ ...+.+|+.++||+|++.+|+..+ ..++.
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf-~V~~v~ea~k~ADvim~L~PDe~q-~~vy~   92 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGF-KVYTVEEAAKRADVVMILLPDEQQ-KEVYE   92 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCC-EeecHHHHhhcCCEEEEeCchhhH-HHHHH
Confidence            4899999999999999999999999999987665544432      233 356899999999999999996544 44666


Q ss_pred             HHHHhcCCCCcEE
Q 043239          219 KDVMTALGKEGVI  231 (286)
Q Consensus       219 ~~~l~~mk~g~il  231 (286)
                      ++.-+.|++|..+
T Consensus        93 ~~I~p~Lk~G~aL  105 (338)
T COG0059          93 KEIAPNLKEGAAL  105 (338)
T ss_pred             HHhhhhhcCCceE
Confidence            7888899999853

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=98.37  E-value=4.9e-07  Score=82.30  Aligned_cols=116  Identities=16%  Similarity=0.288  Sum_probs=88.3

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----CcccccCHHHhhc-CCCEEEEeccCChhhhhcccHHHH
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----SYPFYANVSGLAA-DSDVLIVCCALTEETHHMINKDVM  222 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----~~~~~~~l~e~l~-~aDiV~~~lp~~~~t~~~i~~~~l  222 (286)
                      -.+|||||+|+||+-+|+.+...|+.|...+|+.-...    +...+..+.++++ +.|+|+.|+. ...+..++..--+
T Consensus        52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlcts-ilsiekilatypf  130 (480)
T KOG2380|consen   52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTS-ILSIEKILATYPF  130 (480)
T ss_pred             ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEeh-hhhHHHHHHhcCc
Confidence            45899999999999999999999999999999874322    4445678888775 5999999975 3345555544457


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcC
Q 043239          223 TALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQR  270 (286)
Q Consensus       223 ~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~  270 (286)
                      +.+|.|++|+++-.-....-.++.+.|-+-      .|.+-..|+.+|
T Consensus       131 qrlrrgtlfvdvlSvKefek~lfekYLPkd------fDIlctHpmfGP  172 (480)
T KOG2380|consen  131 QRLRRGTLFVDVLSVKEFEKELFEKYLPKD------FDILCTHPMFGP  172 (480)
T ss_pred             hhhccceeEeeeeecchhHHHHHHHhCccc------cceEeecCCcCC
Confidence            778999999999888888888888888764      455555554443

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=98.37  E-value=1.4e-06  Score=81.03  Aligned_cols=90  Identities=16%  Similarity=0.166  Sum_probs=71.7

Q ss_pred             HHHHHHHhccCCCEEEEECCCCCCC----------CCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCc
Q 043239          160 GSEVAKRLVPFGCSIAYTSRKKKPG----------VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEG  229 (286)
Q Consensus       160 G~~~A~~l~~~g~~V~~~~r~~~~~----------~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~  229 (286)
                      |..+|.+|...|++|++|||+....          .+.....+..+++++||+|++++|....++.++ +...+.++++.
T Consensus        32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~  110 (342)
T PRK12557         32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA  110 (342)
T ss_pred             HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence            8899999999999999999977521          134445688888999999999999665467776 46788899999


Q ss_pred             EEEEcCCCcccCH-HHHHHHHH
Q 043239          230 VIINVGRGALIDE-KELVHFLV  250 (286)
Q Consensus       230 ilvn~srg~~vd~-~al~~al~  250 (286)
                      ++||++.++.... +.+.+.+.
T Consensus       111 IVId~ST~~~~~~s~~l~~~l~  132 (342)
T PRK12557        111 VICNTCTVSPVVLYYSLEGELR  132 (342)
T ss_pred             EEEEecCCCHHHHHHHHHHHhc
Confidence            9999999987765 56666664

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=98.36  E-value=2.8e-06  Score=72.41  Aligned_cols=90  Identities=20%  Similarity=0.235  Sum_probs=67.2

Q ss_pred             CCcccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCC--------Cccc----ccCHHHhhcCCCEEEEec
Q 043239          141 PLGSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGV--------SYPF----YANVSGLAADSDVLIVCC  207 (286)
Q Consensus       141 ~~~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~--------~~~~----~~~l~e~l~~aDiV~~~l  207 (286)
                      +.+.++.||++.|||-+. +|+++|..|...|+.|+.++.+.-...        ....    ..++.+.+++||+|++++
T Consensus        55 ~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAv  134 (197)
T cd01079          55 PYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGV  134 (197)
T ss_pred             ccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEcc
Confidence            347789999999999876 799999999999999998863221110        0000    112788999999999999


Q ss_pred             cCChhhhhc-ccHHHHhcCCCCcEEEEcCCC
Q 043239          208 ALTEETHHM-INKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       208 p~~~~t~~~-i~~~~l~~mk~g~ilvn~srg  237 (286)
                      +    ..++ +..+.   +|+|+++||+|--
T Consensus       135 G----~~~~~i~~d~---ik~GavVIDVGi~  158 (197)
T cd01079         135 P----SPNYKVPTEL---LKDGAICINFASI  158 (197)
T ss_pred             C----CCCCccCHHH---cCCCcEEEEcCCC
Confidence            8    3455 77766   4799999999844

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.33  E-value=1.1e-06  Score=78.85  Aligned_cols=96  Identities=16%  Similarity=0.305  Sum_probs=68.6

Q ss_pred             CEEEEEcCChHHHHHHHHhccCC---CEEEEECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFG---CSIAYTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g---~~V~~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      ++|+|||+|.||+.+++.+...|   .+|.+++|+.+...      +.....+..+++.++|+|++|+|.. ....++ +
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~-~   80 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVL-S   80 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHH-H
Confidence            58999999999999999999888   68999999865421      2334567788889999999999833 344443 2


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 043239          220 DVMTALGKEGVIINVGRGALIDEKELVHFLV  250 (286)
Q Consensus       220 ~~l~~mk~g~ilvn~srg~~vd~~al~~al~  250 (286)
                      +..+.+  +.++|++.-|-  ..+.+.+.+.
T Consensus        81 ~l~~~~--~~~vvs~~~gi--~~~~l~~~~~  107 (267)
T PRK11880         81 ELKGQL--DKLVVSIAAGV--TLARLERLLG  107 (267)
T ss_pred             HHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence            333333  46788886653  5566666654

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.33  E-value=2.5e-06  Score=78.06  Aligned_cols=122  Identities=13%  Similarity=0.171  Sum_probs=103.4

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------CcccccCHHHh---hcCCCEEEEeccCChhhhh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------SYPFYANVSGL---AADSDVLIVCCALTEETHH  215 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------~~~~~~~l~e~---l~~aDiV~~~lp~~~~t~~  215 (286)
                      ..||+||++.||+.++......|+.|.+|+|+.++..          ......|++++   ++.-.+|++.+........
T Consensus         7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~   86 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ   86 (487)
T ss_pred             cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence            4799999999999999999999999999999887643          12345678776   4667888888876666666


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCC
Q 043239          216 MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRS  271 (286)
Q Consensus       216 ~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~  271 (286)
                      +| ++..++|.+|-++||-+..+.-|+..-.+.|.+..|-+.+.-|...|..+..+
T Consensus        87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~G  141 (487)
T KOG2653|consen   87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYG  141 (487)
T ss_pred             HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccC
Confidence            66 57888999999999999999999999999999999999999999999765555

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=98.31  E-value=2.6e-06  Score=76.32  Aligned_cols=97  Identities=23%  Similarity=0.436  Sum_probs=66.1

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCC----EEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGC----SIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMT  223 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~----~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~  223 (286)
                      .++|+|||+|+||+++++.|...+.    ++++++|+.+.. +.....+..+++.+||+|++|+| ......++. +..+
T Consensus         3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl~-~i~~   79 (260)
T PTZ00431          3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-PFVYLQSNEELAKTCDIIVLAVK-PDLAGKVLL-EIKP   79 (260)
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-CeEEeCChHHHHHhCCEEEEEeC-HHHHHHHHH-HHHh
Confidence            4689999999999999999987662    488998876543 22334577788889999999988 344555553 4444


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHH
Q 043239          224 ALGKEGVIINVGRGALIDEKELVHFLV  250 (286)
Q Consensus       224 ~mk~g~ilvn~srg~~vd~~al~~al~  250 (286)
                      .++++ .+|.+.-|  +..+.+.+.+.
T Consensus        80 ~l~~~-~iIS~~aG--i~~~~l~~~~~  103 (260)
T PTZ00431         80 YLGSK-LLISICGG--LNLKTLEEMVG  103 (260)
T ss_pred             hccCC-EEEEEeCC--ccHHHHHHHcC
Confidence            55554 44555444  33555555543

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=98.28  E-value=3.6e-06  Score=69.97  Aligned_cols=81  Identities=25%  Similarity=0.449  Sum_probs=58.3

Q ss_pred             cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.++.||++.|||-+. +|++++..|...|+.|+......         .++++.+++||+|+.+++    ..++|..+ 
T Consensus        31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T---------~~l~~~~~~ADIVVsa~G----~~~~i~~~-   96 (160)
T PF02882_consen   31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT---------KNLQEITRRADIVVSAVG----KPNLIKAD-   96 (160)
T ss_dssp             T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS---------SSHHHHHTTSSEEEE-SS----STT-B-GG-
T ss_pred             CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC---------CcccceeeeccEEeeeec----cccccccc-
Confidence            3469999999999985 99999999999999998876432         578999999999999986    35567655 


Q ss_pred             HhcCCCCcEEEEcCCCcc
Q 043239          222 MTALGKEGVIINVGRGAL  239 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~  239 (286)
                        .+|+|+++||++.-..
T Consensus        97 --~ik~gavVIDvG~~~~  112 (160)
T PF02882_consen   97 --WIKPGAVVIDVGINYV  112 (160)
T ss_dssp             --GS-TTEEEEE--CEEE
T ss_pred             --cccCCcEEEecCCccc
Confidence              4689999999986655

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.27  E-value=8.9e-07  Score=84.68  Aligned_cols=95  Identities=22%  Similarity=0.335  Sum_probs=72.3

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCC-CEEEEECCCCCCCC------Cc--ccccCHHHhhcCCCEEEEeccCChhhhh
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFG-CSIAYTSRKKKPGV------SY--PFYANVSGLAADSDVLIVCCALTEETHH  215 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g-~~V~~~~r~~~~~~------~~--~~~~~l~e~l~~aDiV~~~lp~~~~t~~  215 (286)
                      .+.|++++|+|+|.||..+++.|...| .+|++++|+.++..      +.  ....++.+.+.++|+|+.|++.   +..
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s---~~~  253 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGA---PHP  253 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCC---CCc
Confidence            478999999999999999999999999 58999999876432      11  1234677888999999999653   456


Q ss_pred             cccHHHHhcCC----CCcEEEEcCCCcccCH
Q 043239          216 MINKDVMTALG----KEGVIINVGRGALIDE  242 (286)
Q Consensus       216 ~i~~~~l~~mk----~g~ilvn~srg~~vd~  242 (286)
                      +++++.++.+.    ...+++|++...=+|.
T Consensus       254 ii~~e~l~~~~~~~~~~~~viDla~Prdid~  284 (417)
T TIGR01035       254 IVSKEDVERALRERTRPLFIIDIAVPRDVDP  284 (417)
T ss_pred             eEcHHHHHHHHhcCCCCeEEEEeCCCCCCCh
Confidence            78888776652    2459999986554554

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.27  E-value=1.5e-06  Score=79.62  Aligned_cols=88  Identities=16%  Similarity=0.346  Sum_probs=69.4

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-------------C------CcccccCHHHhhcCCCEEEEeccC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-------------V------SYPFYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-------------~------~~~~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      ++|+|+|.|..|.++|+.|...|++|..|.|.++..             .      ......++.++++.||+|++.+| 
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP-   80 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP-   80 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC-
Confidence            589999999999999999999999999999864311             1      12345789999999999999999 


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 043239          210 TEETHHMINKDVMTALGKEGVIINVGRGA  238 (286)
Q Consensus       210 ~~~t~~~i~~~~l~~mk~g~ilvn~srg~  238 (286)
                      +...+.++. +.-..++++..+|+++-|=
T Consensus        81 s~~~r~v~~-~l~~~l~~~~~iv~~sKGi  108 (329)
T COG0240          81 SQALREVLR-QLKPLLLKDAIIVSATKGL  108 (329)
T ss_pred             hHHHHHHHH-HHhhhccCCCeEEEEeccc
Confidence            455555543 3335678999999999773

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.26  E-value=3.7e-06  Score=76.00  Aligned_cols=77  Identities=22%  Similarity=0.392  Sum_probs=64.5

Q ss_pred             cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.++.|+++.|||.|. +|+++|..|...|+.|+++.+.         ..++++.+++||+|+++++.    .+++..+ 
T Consensus       154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~---------T~~l~~~~~~ADIvi~avG~----p~~v~~~-  219 (285)
T PRK10792        154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF---------TKNLRHHVRNADLLVVAVGK----PGFIPGE-  219 (285)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC---------CCCHHHHHhhCCEEEEcCCC----cccccHH-
Confidence            3468999999999999 9999999999999999987643         24789999999999999852    3356654 


Q ss_pred             HhcCCCCcEEEEcC
Q 043239          222 MTALGKEGVIINVG  235 (286)
Q Consensus       222 l~~mk~g~ilvn~s  235 (286)
                        .+|+|+++||+|
T Consensus       220 --~vk~gavVIDvG  231 (285)
T PRK10792        220 --WIKPGAIVIDVG  231 (285)
T ss_pred             --HcCCCcEEEEcc
Confidence              468999999998

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.25  E-value=4.1e-06  Score=74.00  Aligned_cols=101  Identities=14%  Similarity=0.238  Sum_probs=68.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCC---CE-EEEECCC-CCCCC------CcccccCHHHhhcCCCEEEEeccCChhhhh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFG---CS-IAYTSRK-KKPGV------SYPFYANVSGLAADSDVLIVCCALTEETHH  215 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g---~~-V~~~~r~-~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~  215 (286)
                      ++++|+|||.|.||+.+++.+...|   .+ +++++|+ .+...      +.....+.+++++++|+|++++|.. ..+.
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~   81 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEE   81 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHH
Confidence            3578999999999999999987765   23 6777764 22211      2334567888999999999999943 3344


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          216 MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       216 ~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      ++ ++.-+.++ +.++|+++-|  ++.+.|.+.+..+
T Consensus        82 v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~  114 (245)
T PRK07634         82 LL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG  114 (245)
T ss_pred             HH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence            43 33333344 5689999766  4555676666543

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=98.25  E-value=1.2e-06  Score=79.02  Aligned_cols=98  Identities=14%  Similarity=0.253  Sum_probs=77.6

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------Ccc------cccCHHHhhcCCCEEEEe--ccCC
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SYP------FYANVSGLAADSDVLIVC--CALT  210 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~~------~~~~l~e~l~~aDiV~~~--lp~~  210 (286)
                      ....-+|.|||.|.+|..-|+.+..+|.+|+..+++.++..      +.+      ....+++.+.++|+||-+  +|..
T Consensus       165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga  244 (371)
T COG0686         165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA  244 (371)
T ss_pred             CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence            46777999999999999999999999999999998865532      111      235678899999999876  4433


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcC--CCcccCHH
Q 043239          211 EETHHMINKDVMTALGKEGVIINVG--RGALIDEK  243 (286)
Q Consensus       211 ~~t~~~i~~~~l~~mk~g~ilvn~s--rg~~vd~~  243 (286)
                       ....++.++++++||||+++||++  .|+++.+.
T Consensus       245 -kaPkLvt~e~vk~MkpGsVivDVAiDqGGc~Et~  278 (371)
T COG0686         245 -KAPKLVTREMVKQMKPGSVIVDVAIDQGGCFETS  278 (371)
T ss_pred             -CCceehhHHHHHhcCCCcEEEEEEEcCCCceecc
Confidence             345578899999999999999996  66666543

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.25  E-value=2.4e-06  Score=76.88  Aligned_cols=102  Identities=22%  Similarity=0.328  Sum_probs=70.4

Q ss_pred             CEEEEEcCChHHHHHHHHhccC--CCEE-EEECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF--GCSI-AYTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~--g~~V-~~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      ++|||||+|.||+.+++.+...  ++++ .++|++.++..      +...+.++++++.++|+|+.|.|.. ....    
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~-~~~~----   76 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVN-AVEE----   76 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChH-HHHH----
Confidence            4899999999999999998875  4664 57888765322      2334678999989999999998732 2221    


Q ss_pred             HHHhcCCCCcEEEEcCCCcccC---HHHHHHHHHhCCee
Q 043239          220 DVMTALGKEGVIINVGRGALID---EKELVHFLVRGSLV  255 (286)
Q Consensus       220 ~~l~~mk~g~ilvn~srg~~vd---~~al~~al~~~~i~  255 (286)
                      -....++.|.-++..+.|.+.|   .+.|.++.++++..
T Consensus        77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~  115 (265)
T PRK13304         77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCK  115 (265)
T ss_pred             HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence            1223345566566677787766   34677777776644

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=98.24  E-value=9e-06  Score=71.48  Aligned_cols=102  Identities=16%  Similarity=0.214  Sum_probs=76.0

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCCE---EEEECCCC----CCCC-----------Cc--ccc-cCHHHhhcCCCE
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCS---IAYTSRKK----KPGV-----------SY--PFY-ANVSGLAADSDV  202 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~---V~~~~r~~----~~~~-----------~~--~~~-~~l~e~l~~aDi  202 (286)
                      .++.++++.|+|.|.+|..+|+.|...|++   |+++||+.    ++..           ..  ... .++.+.++++|+
T Consensus        21 ~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dv  100 (226)
T cd05311          21 KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADV  100 (226)
T ss_pred             CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCE
Confidence            458889999999999999999999999984   99999983    3210           01  111 367788889999


Q ss_pred             EEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          203 LIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       203 V~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      |+.+.|     .++++++.++.|.++.++++++..  ..+.-+.++.+.|
T Consensus       101 lIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~g  143 (226)
T cd05311         101 FIGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAG  143 (226)
T ss_pred             EEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcC
Confidence            999875     467888899999999999999844  3444444444443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.23  E-value=1.9e-06  Score=79.32  Aligned_cols=94  Identities=23%  Similarity=0.345  Sum_probs=66.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCC-CEEEEECCCCCCCC------Ccc--cccCHHHhhcCCCEEEEeccCChhhhhc
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFG-CSIAYTSRKKKPGV------SYP--FYANVSGLAADSDVLIVCCALTEETHHM  216 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g-~~V~~~~r~~~~~~------~~~--~~~~l~e~l~~aDiV~~~lp~~~~t~~~  216 (286)
                      +.+++|+|+|.|.||+.+++.|...| .+|.+++|+.++..      +..  ...++.+.+.++|+|+.++|.... ..+
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~  254 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI  254 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence            68999999999999999999999866 47999999875431      211  124567788999999999985433 222


Q ss_pred             ccHHHHhcC-CCCcEEEEcCCCcccC
Q 043239          217 INKDVMTAL-GKEGVIINVGRGALID  241 (286)
Q Consensus       217 i~~~~l~~m-k~g~ilvn~srg~~vd  241 (286)
                      + +..+... +++.++||++...-++
T Consensus       255 ~-~~~~~~~~~~~~~viDlavPrdi~  279 (311)
T cd05213         255 V-ERAMKKRSGKPRLIVDLAVPRDIE  279 (311)
T ss_pred             H-HHHHhhCCCCCeEEEEeCCCCCCc
Confidence            2 2333322 3578999999654344

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.23  E-value=5.9e-06  Score=74.95  Aligned_cols=79  Identities=20%  Similarity=0.379  Sum_probs=65.3

Q ss_pred             cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.++.|+++.|+|.|. +|++++..|...|++|+++++.         ..++.+.++++|+|+++++.    ...+..+.
T Consensus       154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~---------t~~L~~~~~~aDIvI~AtG~----~~~v~~~~  220 (283)
T PRK14192        154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR---------TQNLPELVKQADIIVGAVGK----PELIKKDW  220 (283)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC---------chhHHHHhccCCEEEEccCC----CCcCCHHH
Confidence            3468999999999998 9999999999999999988762         34688888999999999862    22566654


Q ss_pred             HhcCCCCcEEEEcCCC
Q 043239          222 MTALGKEGVIINVGRG  237 (286)
Q Consensus       222 l~~mk~g~ilvn~srg  237 (286)
                         +|+|++++|++-.
T Consensus       221 ---lk~gavViDvg~n  233 (283)
T PRK14192        221 ---IKQGAVVVDAGFH  233 (283)
T ss_pred             ---cCCCCEEEEEEEe
Confidence               6899999999744

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.23  E-value=4.4e-06  Score=75.47  Aligned_cols=80  Identities=20%  Similarity=0.341  Sum_probs=66.5

Q ss_pred             cccCCCCEEEEEcCC-hHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLG-SIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G-~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.++.|+++.|||-| .+|+++|..|...|+.|+++...         ..++.+.+++||+|+++++    ..+++..++
T Consensus       152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~---------t~~l~~~~~~ADIvV~AvG----~p~~i~~~~  218 (285)
T PRK14191        152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHIL---------TKDLSFYTQNADIVCVGVG----KPDLIKASM  218 (285)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCC---------cHHHHHHHHhCCEEEEecC----CCCcCCHHH
Confidence            346899999999999 99999999999999999887431         2467889999999999986    455777776


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 043239          222 MTALGKEGVIINVGRGA  238 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~  238 (286)
                      +   |+|+++||+|--.
T Consensus       219 v---k~GavVIDvGi~~  232 (285)
T PRK14191        219 V---KKGAVVVDIGINR  232 (285)
T ss_pred             c---CCCcEEEEeeccc
Confidence            5   8999999998543

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.22  E-value=3.7e-06  Score=75.77  Aligned_cols=79  Identities=22%  Similarity=0.368  Sum_probs=66.7

Q ss_pred             cccCCCCEEEEEcCC-hHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLG-SIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G-~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.++.|+++.|+|.+ ..|+++|..|...|+.|+...+.         ..++.+.+++||+|+.+++.    .+++.+++
T Consensus       147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~---------t~~L~~~~~~ADIvI~Avgk----~~lv~~~~  213 (279)
T PRK14178        147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSK---------TENLKAELRQADILVSAAGK----AGFITPDM  213 (279)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecC---------hhHHHHHHhhCCEEEECCCc----ccccCHHH
Confidence            346999999999999 99999999999999999876643         24789999999999999863    26788877


Q ss_pred             HhcCCCCcEEEEcCCC
Q 043239          222 MTALGKEGVIINVGRG  237 (286)
Q Consensus       222 l~~mk~g~ilvn~srg  237 (286)
                      +   |+|+++||+|-.
T Consensus       214 v---k~GavVIDVgi~  226 (279)
T PRK14178        214 V---KPGATVIDVGIN  226 (279)
T ss_pred             c---CCCcEEEEeecc
Confidence            4   999999999843

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.22  E-value=5.2e-06  Score=75.03  Aligned_cols=78  Identities=26%  Similarity=0.448  Sum_probs=65.1

Q ss_pred             cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.++.|+++.|||.|. +|+++|..|...|+.|+++...         ..++.+..++||+|++++.-    .+++..+ 
T Consensus       159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~---------T~~l~~~~~~ADIvv~AvG~----p~~i~~~-  224 (287)
T PRK14176        159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF---------TDDLKKYTLDADILVVATGV----KHLIKAD-  224 (287)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc---------CCCHHHHHhhCCEEEEccCC----ccccCHH-
Confidence            3468999999999999 9999999999999999887642         24789999999999998752    3467666 


Q ss_pred             HhcCCCCcEEEEcCC
Q 043239          222 MTALGKEGVIINVGR  236 (286)
Q Consensus       222 l~~mk~g~ilvn~sr  236 (286)
                        ++|+|+++||+|-
T Consensus       225 --~vk~gavVIDvGi  237 (287)
T PRK14176        225 --MVKEGAVIFDVGI  237 (287)
T ss_pred             --HcCCCcEEEEecc
Confidence              4689999999985

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=98.21  E-value=4.9e-06  Score=74.59  Aligned_cols=94  Identities=19%  Similarity=0.366  Sum_probs=72.9

Q ss_pred             CEEEEEcCChHHHHHHHHhccCC----CEEEEECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCChhhhhccc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFG----CSIAYTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALTEETHHMIN  218 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g----~~V~~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~  218 (286)
                      ++|||||+|+||++++.-|.+.|    .+|++.+|+.++..      +.....+..++..++|+|++++..  +    .-
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKP--q----~~   75 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKP--Q----DL   75 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeCh--H----hH
Confidence            58999999999999999999888    47999999887642      223356777899999999999862  2    22


Q ss_pred             HHHHhcCC---CCcEEEEcCCCcccCHHHHHHHHH
Q 043239          219 KDVMTALG---KEGVIINVGRGALIDEKELVHFLV  250 (286)
Q Consensus       219 ~~~l~~mk---~g~ilvn~srg~~vd~~al~~al~  250 (286)
                      ++.++.++   ++.++|.+.-|  +..+.|.+++.
T Consensus        76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~  108 (266)
T COG0345          76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLG  108 (266)
T ss_pred             HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcC
Confidence            45566665   68899999877  56677777775

>PLN00203 glutamyl-tRNA reductase

Probab=98.21  E-value=1.7e-06  Score=84.68  Aligned_cols=94  Identities=19%  Similarity=0.333  Sum_probs=72.4

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-------Cc----ccccCHHHhhcCCCEEEEeccCChh
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-------SY----PFYANVSGLAADSDVLIVCCALTEE  212 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-------~~----~~~~~l~e~l~~aDiV~~~lp~~~~  212 (286)
                      ++.+++|+|||.|.||+.+++.|...|+ +|++++|+.++..       +.    ....++.+.+.++|+|+++.|   .
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~---s  339 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTS---S  339 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccC---C
Confidence            4789999999999999999999999997 7999999876532       11    123466778999999999865   4


Q ss_pred             hhhcccHHHHhcCCC-------CcEEEEcCCCcccC
Q 043239          213 THHMINKDVMTALGK-------EGVIINVGRGALID  241 (286)
Q Consensus       213 t~~~i~~~~l~~mk~-------g~ilvn~srg~~vd  241 (286)
                      ...++.++.++.+++       ..+|||++-..=||
T Consensus       340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdId  375 (519)
T PLN00203        340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVG  375 (519)
T ss_pred             CCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCc
Confidence            566888888887643       24899998654343

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.20  E-value=1.6e-06  Score=73.57  Aligned_cols=110  Identities=14%  Similarity=0.199  Sum_probs=75.7

Q ss_pred             EEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----------------------------CcccccCHHHhhcCC
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----------------------------SYPFYANVSGLAADS  200 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----------------------------~~~~~~~l~e~l~~a  200 (286)
                      +|+|||.|.||..+|..+...|++|..+|++.+...                             ......+++++. +|
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a   79 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA   79 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence            699999999999999999999999999999876321                             011246788877 99


Q ss_pred             CEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccC
Q 043239          201 DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLR  263 (286)
Q Consensus       201 DiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~  263 (286)
                      |+|+=++|..-+.+.-+-++.-+.++++++|...  .+-+.-..|...+. +.=+..++=.|.
T Consensus        80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasn--TSsl~i~~la~~~~-~p~R~ig~Hf~~  139 (180)
T PF02737_consen   80 DLVIEAIPEDLELKQELFAELDEICPPDTILASN--TSSLSISELAAALS-RPERFIGMHFFN  139 (180)
T ss_dssp             SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE----SSS-HHHHHTTSS-TGGGEEEEEE-S
T ss_pred             heehhhccccHHHHHHHHHHHHHHhCCCceEEec--CCCCCHHHHHhccC-cCceEEEEeccc
Confidence            9999999988877776767777778899987655  33456666777664 333445555564

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=98.20  E-value=3.5e-06  Score=78.15  Aligned_cols=102  Identities=19%  Similarity=0.295  Sum_probs=73.2

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC----CCcc-----------------cccCHHHhhcCCCEEEEec
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG----VSYP-----------------FYANVSGLAADSDVLIVCC  207 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~----~~~~-----------------~~~~l~e~l~~aDiV~~~l  207 (286)
                      ++|+|||.|.||..+|..|...|++|.+++|+....    .+..                 ...+. +.++.+|+|++++
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~v   81 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTV   81 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEe
Confidence            589999999999999999999999999999865211    0110                 12234 5678999999999


Q ss_pred             cCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239          208 ALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       208 p~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i  254 (286)
                      |.. +...++ ++..+.++++.+++++..| +...+.+.+.+.+.++
T Consensus        82 k~~-~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~  125 (341)
T PRK08229         82 KSA-ATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATV  125 (341)
T ss_pred             cCc-chHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcE
Confidence            854 445444 4566778899999988654 4445667777766544

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.19  E-value=1.9e-05  Score=64.19  Aligned_cols=80  Identities=21%  Similarity=0.306  Sum_probs=66.2

Q ss_pred             cccCCCCEEEEEcCC-hHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLG-SIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G-~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.++.|+++.|+|-+ ..|+.++..|...|++|...++..         .++++.+++||+|+++++..    ++++.+.
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---------~~l~~~v~~ADIVvsAtg~~----~~i~~~~   89 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---------IQLQSKVHDADVVVVGSPKP----EKVPTEW   89 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---------cCHHHHHhhCCEEEEecCCC----CccCHHH
Confidence            457899999999965 589999999999999998887532         37889999999999998743    5677666


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 043239          222 MTALGKEGVIINVGRGA  238 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~  238 (286)
                         +|||++++|++...
T Consensus        90 ---ikpGa~Vidvg~~~  103 (140)
T cd05212          90 ---IKPGATVINCSPTK  103 (140)
T ss_pred             ---cCCCCEEEEcCCCc
Confidence               68999999998665

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=98.18  E-value=9.4e-06  Score=73.80  Aligned_cols=103  Identities=16%  Similarity=0.262  Sum_probs=71.9

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cc-----------ccccCHHHhhcCCCEEEEeccCChh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SY-----------PFYANVSGLAADSDVLIVCCALTEE  212 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~-----------~~~~~l~e~l~~aDiV~~~lp~~~~  212 (286)
                      ++|+|||.|.||..+|..|...|++|+.++|+.+...     +.           ....+..++ +.+|+|++++|.. +
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~   78 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q   78 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence            4799999999999999999999999999998554311     11           113445555 8899999999843 4


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          213 THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       213 t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      +..++ +...+.+.+++.+|.+..| +-..+.+.+.+....+.
T Consensus        79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~  119 (304)
T PRK06522         79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVL  119 (304)
T ss_pred             HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEE
Confidence            44443 3455566778888888777 33355566666555544

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.16  E-value=1.2e-06  Score=73.37  Aligned_cols=92  Identities=13%  Similarity=0.280  Sum_probs=66.1

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----C---cc-----------------------cccC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----S---YP-----------------------FYAN  192 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~---~~-----------------------~~~~  192 (286)
                      ..+...+|.|+|.|+.|+..++.+.++|++|+.++.......     .   ..                       ....
T Consensus        16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (168)
T PF01262_consen   16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN   95 (168)
T ss_dssp             TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred             CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence            346778999999999999999999999999999987653211     0   00                       1124


Q ss_pred             HHHhhcCCCEEEEe-ccCChhhhhcccHHHHhcCCCCcEEEEcC
Q 043239          193 VSGLAADSDVLIVC-CALTEETHHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       193 l~e~l~~aDiV~~~-lp~~~~t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      +.+.++.+|+|+++ +--.+....++.++.++.||++++|+|+|
T Consensus        96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis  139 (168)
T PF01262_consen   96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS  139 (168)
T ss_dssp             HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred             HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence            66788999999864 33345567789999999999999999996

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=98.16  E-value=8e-06  Score=76.07  Aligned_cols=87  Identities=17%  Similarity=0.193  Sum_probs=65.7

Q ss_pred             EEEEEcCChHHHHHHHHhccCC--------CEEEEECCCC-----C----------CC---CC------cccccCHHHhh
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFG--------CSIAYTSRKK-----K----------PG---VS------YPFYANVSGLA  197 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g--------~~V~~~~r~~-----~----------~~---~~------~~~~~~l~e~l  197 (286)
                      +|+|||.|++|.++|..|...|        ++|..|.|..     +          ..   .+      .....++++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            5899999999999999998877        8999998732     0          00   01      12336889999


Q ss_pred             cCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 043239          198 ADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGA  238 (286)
Q Consensus       198 ~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~  238 (286)
                      ++||+|++++| +...+.++ ++.-+.++++..+|+++-|=
T Consensus        81 ~~ADiIIlAVP-s~~i~~vl-~~l~~~l~~~~~iVs~tKGi  119 (342)
T TIGR03376        81 KGADILVFVIP-HQFLEGIC-KQLKGHVKPNARAISCIKGL  119 (342)
T ss_pred             hcCCEEEEECC-hHHHHHHH-HHHHhhcCCCCEEEEEeCCc
Confidence            99999999999 34555444 45556778889999998773

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=98.15  E-value=3e-06  Score=80.15  Aligned_cols=95  Identities=22%  Similarity=0.342  Sum_probs=73.0

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC------C--cccccCHHHhhcCCCEEEEeccCChhhhh
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV------S--YPFYANVSGLAADSDVLIVCCALTEETHH  215 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~------~--~~~~~~l~e~l~~aDiV~~~lp~~~~t~~  215 (286)
                      +|+++++.|||+|.||..+|+.|...|. +|++.+|+.++..      +  +..+.++.+.+.++|+|+++.   .+...
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissT---sa~~~  251 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISST---SAPHP  251 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEec---CCCcc
Confidence            4899999999999999999999999996 7999999987653      2  234567778899999999985   34566


Q ss_pred             cccHHHHhcC---CCCcEEEEcCCCcccCH
Q 043239          216 MINKDVMTAL---GKEGVIINVGRGALIDE  242 (286)
Q Consensus       216 ~i~~~~l~~m---k~g~ilvn~srg~~vd~  242 (286)
                      ++..+.+...   ++.-++||++=..-++.
T Consensus       252 ii~~~~ve~a~~~r~~~livDiavPRdie~  281 (414)
T COG0373         252 IITREMVERALKIRKRLLIVDIAVPRDVEP  281 (414)
T ss_pred             ccCHHHHHHHHhcccCeEEEEecCCCCCCc
Confidence            7777655543   12258999986554444

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.13  E-value=3.2e-06  Score=81.00  Aligned_cols=95  Identities=22%  Similarity=0.339  Sum_probs=70.9

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC------C--cccccCHHHhhcCCCEEEEeccCChhhhh
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV------S--YPFYANVSGLAADSDVLIVCCALTEETHH  215 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~------~--~~~~~~l~e~l~~aDiV~~~lp~~~~t~~  215 (286)
                      .+.|++|+|+|.|.||+.+++.|...|+ +|++++|+.++..      +  .....++.+.+.++|+|+.++|.   ...
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s---~~~  255 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGA---PHP  255 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCC---CCc
Confidence            3789999999999999999999999998 7999999875532      1  11224566778999999999764   355


Q ss_pred             cccHHHHhcC-----CCCcEEEEcCCCcccCH
Q 043239          216 MINKDVMTAL-----GKEGVIINVGRGALIDE  242 (286)
Q Consensus       216 ~i~~~~l~~m-----k~g~ilvn~srg~~vd~  242 (286)
                      ++..+.++.+     ..+.++||++-..-+|.
T Consensus       256 ~i~~~~l~~~~~~~~~~~~vviDla~Prdid~  287 (423)
T PRK00045        256 IIGKGMVERALKARRHRPLLLVDLAVPRDIEP  287 (423)
T ss_pred             EEcHHHHHHHHhhccCCCeEEEEeCCCCCCcc
Confidence            6777766554     24579999986543443

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=98.13  E-value=9.6e-06  Score=73.89  Aligned_cols=103  Identities=22%  Similarity=0.415  Sum_probs=72.0

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-----CCc-------------ccccCHHHhhcCCCEEEEeccCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSY-------------PFYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~~~-------------~~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      ++|+|+|.|.||..+|..|...|++|+.++| .+..     .+.             ....+.++....+|+|++++|..
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~   79 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY   79 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence            4799999999999999999999999999998 3221     110             01235566668899999999843


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          211 EETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       211 ~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                       ++..++ +...+.++++.++|.+..| +-..+.+.+.+.+.++.
T Consensus        80 -~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~  121 (305)
T PRK12921         80 -QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL  121 (305)
T ss_pred             -CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence             444443 3455556778888888766 34466677777655543

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.12  E-value=2.4e-05  Score=76.39  Aligned_cols=178  Identities=15%  Similarity=0.204  Sum_probs=105.2

Q ss_pred             CceEEEEeCCCCCCHHHhccCCC-ccEEEEcCCCCCcCChhHHhhcCeEEEecCCCC----C------cChHHHHHHHHH
Q 043239           48 SVRAILCLGPSPLTSDTLSLLPA-LEIVVGSTAGIDHVDLQECRRRGILVTNAGNAF----S------EDGADYVVGLLV  116 (286)
Q Consensus        48 ~~d~i~~~~~~~~~~~~l~~~~~-Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~----~------~~vAE~~l~~~L  116 (286)
                      ++|+|+.-  ...+.+.++.++. -.+|+......|.=-++.+.++||++.......    +      .++|+.      
T Consensus        65 ~~diilkV--~~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~I------  136 (509)
T PRK09424         65 QSDIILKV--NAPSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANI------  136 (509)
T ss_pred             cCCEEEEe--CCCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhh------
Confidence            57887742  1234555666664 445555555444434677889999987522211    1      223322      


Q ss_pred             HHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc--
Q 043239          117 DVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF--  189 (286)
Q Consensus       117 ~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~--  189 (286)
                      +.+|-+.++.+..  +.... +.........+.+|.|+|.|.+|...++.++.+|.+|.++|+++++.+     +...  
T Consensus       137 AGy~Av~~aa~~~--~~~~~-g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~  213 (509)
T PRK09424        137 AGYRAVIEAAHEF--GRFFT-GQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLE  213 (509)
T ss_pred             hHHHHHHHHHHHh--cccCC-CceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEE
Confidence            2233333332221  11110 000011245699999999999999999999999999999998775422     2110  


Q ss_pred             c-----------------cC--------HHHhhcCCCEEEEeccCChh-hhhcccHHHHhcCCCCcEEEEcCC
Q 043239          190 Y-----------------AN--------VSGLAADSDVLIVCCALTEE-THHMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       190 ~-----------------~~--------l~e~l~~aDiV~~~lp~~~~-t~~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                      .                 .+        +.+.++.+|+|+.+...... ...++.++.++.||+|+++||+|-
T Consensus       214 i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        214 LDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             eccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            0                 01        11223579999998753221 233556889999999999999984

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=98.10  E-value=1.1e-05  Score=74.68  Aligned_cols=93  Identities=14%  Similarity=0.173  Sum_probs=68.4

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCCCcccccCHH----HhhcCCCEEEEeccCChhhhhcccH
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVSYPFYANVS----GLAADSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~~~~~~~~l~----e~l~~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      ++.++++.|||.|.||+.+++.|...|. +|++.+|+.....    +.++.    +...++|+|+.|...|.....++..
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~----~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~  246 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLP----YRTVVREELSFQDPYDVIFFGSSESAYAFPHLSW  246 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccc----hhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeH
Confidence            5889999999999999999999999996 6999999975422    22221    4567899999874334445566777


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCH
Q 043239          220 DVMTALGKEGVIINVGRGALIDE  242 (286)
Q Consensus       220 ~~l~~mk~g~ilvn~srg~~vd~  242 (286)
                      +.++..++ -+|||.+=..=||.
T Consensus       247 ~~~~~~~~-r~~iDLAvPRdId~  268 (338)
T PRK00676        247 ESLADIPD-RIVFDFNVPRTFPW  268 (338)
T ss_pred             HHHhhccC-cEEEEecCCCCCcc
Confidence            76655433 48999986655553

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.09  E-value=1.5e-05  Score=71.84  Aligned_cols=78  Identities=19%  Similarity=0.364  Sum_probs=65.0

Q ss_pred             cccCCCCEEEEEcCC-hHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLG-SIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G-~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.++.|+++.|||-| .+|+++|..|...|+.|+.....         ..++.+.+++||+|++++.    ..+++..++
T Consensus       152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~---------T~~l~~~~~~ADIvV~AvG----kp~~i~~~~  218 (281)
T PRK14183        152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF---------TKDLKAHTKKADIVIVGVG----KPNLITEDM  218 (281)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CcCHHHHHhhCCEEEEecC----cccccCHHH
Confidence            347999999999999 89999999999999999876431         2468899999999999986    455777766


Q ss_pred             HhcCCCCcEEEEcCC
Q 043239          222 MTALGKEGVIINVGR  236 (286)
Q Consensus       222 l~~mk~g~ilvn~sr  236 (286)
                         .|+|+++||+|-
T Consensus       219 ---vk~gavvIDvGi  230 (281)
T PRK14183        219 ---VKEGAIVIDIGI  230 (281)
T ss_pred             ---cCCCcEEEEeec
Confidence               479999999983

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.07  E-value=3e-05  Score=70.06  Aligned_cols=80  Identities=23%  Similarity=0.485  Sum_probs=65.7

Q ss_pred             cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.++.||++.|||-+. +|+++|..|...|+.|+++...         ..++.+.+++||+|+++++    ..+++..++
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~---------T~~l~~~~~~ADIvI~AvG----~~~~i~~~~  218 (284)
T PRK14170        152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR---------TKDLPQVAKEADILVVATG----LAKFVKKDY  218 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEecC----CcCccCHHH
Confidence            4479999999999765 7999999999999999876432         2468999999999999987    355677766


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 043239          222 MTALGKEGVIINVGRGA  238 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~  238 (286)
                         +|+|+++||+|--.
T Consensus       219 ---vk~GavVIDvGin~  232 (284)
T PRK14170        219 ---IKPGAIVIDVGMDR  232 (284)
T ss_pred             ---cCCCCEEEEccCcc
Confidence               57999999998554

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.07  E-value=1.4e-05  Score=74.94  Aligned_cols=89  Identities=16%  Similarity=0.202  Sum_probs=65.5

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCC-------CEEEEECCCCCC---------------C---CC------cccccCHHHh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFG-------CSIAYTSRKKKP---------------G---VS------YPFYANVSGL  196 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g-------~~V~~~~r~~~~---------------~---~~------~~~~~~l~e~  196 (286)
                      .++|+|||.|.+|.++|..|...|       ++|..|.|+.+.               .   .+      .....++.++
T Consensus        11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea   90 (365)
T PTZ00345         11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA   90 (365)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence            358999999999999999998766       799999887641               0   01      1224678899


Q ss_pred             hcCCCEEEEeccCChhhhhcccHHHHh--cCCCCcEEEEcCCCc
Q 043239          197 AADSDVLIVCCALTEETHHMINKDVMT--ALGKEGVIINVGRGA  238 (286)
Q Consensus       197 l~~aDiV~~~lp~~~~t~~~i~~~~l~--~mk~g~ilvn~srg~  238 (286)
                      +++||+|++++| ....+.++ ++.-+  .++++.++|+++-|=
T Consensus        91 v~~aDiIvlAVP-sq~l~~vl-~~l~~~~~l~~~~~iIS~aKGI  132 (365)
T PTZ00345         91 VEDADLLIFVIP-HQFLESVL-SQIKENNNLKKHARAISLTKGI  132 (365)
T ss_pred             HhcCCEEEEEcC-hHHHHHHH-HHhccccccCCCCEEEEEeCCc
Confidence            999999999999 34445444 23333  566778999998773

>PRK06141 ornithine cyclodeaminase; Validated

Probab=98.05  E-value=1.1e-05  Score=74.25  Aligned_cols=82  Identities=12%  Similarity=0.134  Sum_probs=60.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHhcc-CC-CEEEEECCCCCCCC---------C--cccccCHHHhhcCCCEEEEeccCChhh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVP-FG-CSIAYTSRKKKPGV---------S--YPFYANVSGLAADSDVLIVCCALTEET  213 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~-~g-~~V~~~~r~~~~~~---------~--~~~~~~l~e~l~~aDiV~~~lp~~~~t  213 (286)
                      ..++++|||+|.+|+.+++.+.. ++ .+|.+|+|+.++..         +  .....++++++++||+|+++.|..   
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~---  200 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST---  200 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence            46799999999999999985543 44 58999999876532         1  223468889999999998887643   


Q ss_pred             hhcccHHHHhcCCCCcEEEEcC
Q 043239          214 HHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       214 ~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      ..++..+   .+++|+ +||+.
T Consensus       201 ~pvl~~~---~l~~g~-~i~~i  218 (314)
T PRK06141        201 EPLVRGE---WLKPGT-HLDLV  218 (314)
T ss_pred             CCEecHH---HcCCCC-EEEee
Confidence            5666654   468998 45543

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.04  E-value=2.3e-05  Score=70.77  Aligned_cols=78  Identities=19%  Similarity=0.406  Sum_probs=64.9

Q ss_pred             cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.++.|+++.|||-+. +|+++|..|...|+.|+.+...         ..++.+..++||+|+++++    ..+++..++
T Consensus       154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~---------T~~l~~~~~~ADIvIsAvG----k~~~i~~~~  220 (284)
T PRK14177        154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK---------TQNLPSIVRQADIIVGAVG----KPEFIKADW  220 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEeCC----CcCccCHHH
Confidence            3468999999999765 8999999999999999987642         2478899999999999987    456777766


Q ss_pred             HhcCCCCcEEEEcCC
Q 043239          222 MTALGKEGVIINVGR  236 (286)
Q Consensus       222 l~~mk~g~ilvn~sr  236 (286)
                         .|+|+++||+|-
T Consensus       221 ---ik~gavVIDvGi  232 (284)
T PRK14177        221 ---ISEGAVLLDAGY  232 (284)
T ss_pred             ---cCCCCEEEEecC
Confidence               589999999985

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.03  E-value=3.1e-05  Score=70.08  Aligned_cols=81  Identities=28%  Similarity=0.496  Sum_probs=66.7

Q ss_pred             cccCCCCEEEEEcCC-hHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLG-SIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G-~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.++.|+++.|||-+ .+|+++|..|...|+.|+++...         ..++.+.+++||+|+.+++    ..++++.++
T Consensus       153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~---------t~~l~~~~~~ADIvI~AvG----~p~~i~~~~  219 (284)
T PRK14190        153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK---------TKNLAELTKQADILIVAVG----KPKLITADM  219 (284)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC---------chhHHHHHHhCCEEEEecC----CCCcCCHHH
Confidence            446999999999965 58999999999999999877431         2478899999999999986    345788877


Q ss_pred             HhcCCCCcEEEEcCCCcc
Q 043239          222 MTALGKEGVIINVGRGAL  239 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~  239 (286)
                      +   |+|+++||+|.-.+
T Consensus       220 i---k~gavVIDvGi~~~  234 (284)
T PRK14190        220 V---KEGAVVIDVGVNRL  234 (284)
T ss_pred             c---CCCCEEEEeecccc
Confidence            5   89999999986653

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.03  E-value=2.7e-05  Score=70.33  Aligned_cols=80  Identities=29%  Similarity=0.487  Sum_probs=65.6

Q ss_pred             cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.++.|+++.|||-+. +|+++|..|...|+.|+.+...         ..++.+.+++||+|+++++    ..++++.++
T Consensus       151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~---------T~~l~~~~~~ADIvI~AvG----~p~~i~~~~  217 (282)
T PRK14169        151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK---------TRNLKQLTKEADILVVAVG----VPHFIGADA  217 (282)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCC---------CCCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence            3468999999999765 7999999999999999877432         1368899999999999987    355787776


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 043239          222 MTALGKEGVIINVGRGA  238 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~  238 (286)
                         +|+|+++||+|--.
T Consensus       218 ---vk~GavVIDvGin~  231 (282)
T PRK14169        218 ---VKPGAVVIDVGISR  231 (282)
T ss_pred             ---cCCCcEEEEeeccc
Confidence               58999999998544

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.02  E-value=2.5e-05  Score=70.48  Aligned_cols=78  Identities=22%  Similarity=0.403  Sum_probs=64.9

Q ss_pred             cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.++.|+++.|||-+. +|+++|..|...|+.|+.+.+.         ..++++..++||+|++++.    ..+++..++
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~---------T~nl~~~~~~ADIvIsAvG----kp~~i~~~~  218 (282)
T PRK14166        152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK---------TKDLSLYTRQADLIIVAAG----CVNLLRSDM  218 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEcCC----CcCccCHHH
Confidence            3468999999999765 7999999999999999876542         2468999999999999987    456787776


Q ss_pred             HhcCCCCcEEEEcCC
Q 043239          222 MTALGKEGVIINVGR  236 (286)
Q Consensus       222 l~~mk~g~ilvn~sr  236 (286)
                         .|+|+++||+|-
T Consensus       219 ---vk~GavVIDvGi  230 (282)
T PRK14166        219 ---VKEGVIVVDVGI  230 (282)
T ss_pred             ---cCCCCEEEEecc
Confidence               589999999983

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.00  E-value=3.1e-05  Score=70.46  Aligned_cols=81  Identities=17%  Similarity=0.412  Sum_probs=66.1

Q ss_pred             cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.++.|+++.|||-+. +|+++|..|...|+.|+.+...         ..++++.+++||+|+++++    ..+++..++
T Consensus       153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~---------T~~l~~~~~~ADIvIsAvG----kp~~i~~~~  219 (297)
T PRK14186        153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR---------TQDLASITREADILVAAAG----RPNLIGAEM  219 (297)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence            4478999999999765 7999999999999999877432         2378899999999999987    345777766


Q ss_pred             HhcCCCCcEEEEcCCCcc
Q 043239          222 MTALGKEGVIINVGRGAL  239 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~  239 (286)
                         +|+|+++||+|--.+
T Consensus       220 ---ik~gavVIDvGin~~  234 (297)
T PRK14186        220 ---VKPGAVVVDVGIHRL  234 (297)
T ss_pred             ---cCCCCEEEEeccccc
Confidence               589999999985553

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=98.00  E-value=5.7e-06  Score=74.90  Aligned_cols=107  Identities=17%  Similarity=0.225  Sum_probs=72.2

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCC-CEEEEECCCCCCCCC----cc-----cc-cCHHHhhcCCCEEEEeccCChhh
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFG-CSIAYTSRKKKPGVS----YP-----FY-ANVSGLAADSDVLIVCCALTEET  213 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g-~~V~~~~r~~~~~~~----~~-----~~-~~l~e~l~~aDiV~~~lp~~~~t  213 (286)
                      .+.++++.|+|.|.+|++++..|...| .+|++++|+.++...    ..     .. .++.+.+.++|+|+.++|..-..
T Consensus       120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~  199 (278)
T PRK00258        120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSG  199 (278)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCC
Confidence            477899999999999999999999999 589999998765321    00     11 13346778899999999865321


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 043239          214 HHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGS  253 (286)
Q Consensus       214 ~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~  253 (286)
                      ..-...-....++++.+++|+.-.. ..+ .|+++.++.+
T Consensus       200 ~~~~~~~~~~~l~~~~~v~DivY~P-~~T-~ll~~A~~~G  237 (278)
T PRK00258        200 ELPLPPLPLSLLRPGTIVYDMIYGP-LPT-PFLAWAKAQG  237 (278)
T ss_pred             CCCCCCCCHHHcCCCCEEEEeecCC-CCC-HHHHHHHHCc
Confidence            1101111234568899999997644 344 4444444443

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.99  E-value=9e-06  Score=77.60  Aligned_cols=92  Identities=16%  Similarity=0.309  Sum_probs=68.6

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC------C---cccccCHHHhhcCCCEEEEeccCChhhh
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV------S---YPFYANVSGLAADSDVLIVCCALTEETH  214 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~------~---~~~~~~l~e~l~~aDiV~~~lp~~~~t~  214 (286)
                      .+.|+++.|||.|.||+.+++.|...|. ++++++|+.++..      +   ...+.++.+.+.++|+|++|.+.   ..
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a---~~  254 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNV---LE  254 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCC---CC
Confidence            4789999999999999999999999996 7999999976432      1   11235567789999999999753   45


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcccC
Q 043239          215 HMINKDVMTALGKEGVIINVGRGALID  241 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~srg~~vd  241 (286)
                      .+|..+...  .+..+|||.+=..-||
T Consensus       255 ~vi~~~~~~--~~~~~~iDLavPRdid  279 (414)
T PRK13940        255 YIVTCKYVG--DKPRVFIDISIPQALD  279 (414)
T ss_pred             eeECHHHhC--CCCeEEEEeCCCCCCC
Confidence            667766543  2346889998554333

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.99  E-value=3.1e-05  Score=70.26  Aligned_cols=80  Identities=16%  Similarity=0.378  Sum_probs=65.6

Q ss_pred             cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.++.|+++.|||-+. +|++++..|...|+.|+++...         ..++.+.+++||+|+++++    ..+++..++
T Consensus       155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~---------T~~l~~~~~~ADIvVsAvG----kp~~i~~~~  221 (294)
T PRK14187        155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSA---------TRDLADYCSKADILVAAVG----IPNFVKYSW  221 (294)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence            3468999999999765 7999999999999999877642         2468899999999999987    355677776


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 043239          222 MTALGKEGVIINVGRGA  238 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~  238 (286)
                         .|+|+++||+|--.
T Consensus       222 ---ik~gaiVIDVGin~  235 (294)
T PRK14187        222 ---IKKGAIVIDVGINS  235 (294)
T ss_pred             ---cCCCCEEEEecccc
Confidence               47999999997443

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.99  E-value=3e-05  Score=69.99  Aligned_cols=78  Identities=23%  Similarity=0.406  Sum_probs=64.6

Q ss_pred             cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.++.|+++.|||-+. +|+++|..|...|+.|+.+...         ..++.+..++||+|+++++    ..+++..++
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~---------T~dl~~~~k~ADIvIsAvG----kp~~i~~~~  219 (282)
T PRK14180        153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF---------TTDLKSHTTKADILIVAVG----KPNFITADM  219 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCC---------CCCHHHHhhhcCEEEEccC----CcCcCCHHH
Confidence            3468999999999765 7999999999999999887542         2378889999999999987    355677766


Q ss_pred             HhcCCCCcEEEEcCC
Q 043239          222 MTALGKEGVIINVGR  236 (286)
Q Consensus       222 l~~mk~g~ilvn~sr  236 (286)
                         .|+|+++||+|-
T Consensus       220 ---vk~gavVIDvGi  231 (282)
T PRK14180        220 ---VKEGAVVIDVGI  231 (282)
T ss_pred             ---cCCCcEEEEecc
Confidence               579999999984

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.99  E-value=2.4e-05  Score=70.55  Aligned_cols=105  Identities=13%  Similarity=0.071  Sum_probs=73.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC---------CcccccCHHH-hhcCCCEEEEeccCCh--hh
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV---------SYPFYANVSG-LAADSDVLIVCCALTE--ET  213 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~---------~~~~~~~l~e-~l~~aDiV~~~lp~~~--~t  213 (286)
                      ..+++++|+|.|.+|++++..|...|++|.+++|+.++..         +.....++++ ...++|+|++++|..-  ..
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~  194 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI  194 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence            4578999999999999999999999999999999865421         1111223443 3357999999999652  11


Q ss_pred             hh-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          214 HH-MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       214 ~~-~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      .. .+.   .+.++++.+++|+...... + .|+++.++.++.
T Consensus       195 ~~~~~~---~~~l~~~~~v~D~~y~p~~-T-~ll~~A~~~G~~  232 (270)
T TIGR00507       195 DEPPVP---AEKLKEGMVVYDMVYNPGE-T-PFLAEAKSLGTK  232 (270)
T ss_pred             CCCCCC---HHHcCCCCEEEEeccCCCC-C-HHHHHHHHCCCe
Confidence            11 122   3457899999999876643 3 577777776554

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=97.98  E-value=3.1e-05  Score=70.43  Aligned_cols=80  Identities=21%  Similarity=0.398  Sum_probs=65.8

Q ss_pred             cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.++.|+++.|||-+. +|+++|..|...|+.|+.+...         ..++++.+++||+|++++..    .+++..+.
T Consensus       162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~---------T~nl~~~~~~ADIvv~AvGk----~~~i~~~~  228 (299)
T PLN02516        162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR---------TPDPESIVREADIVIAAAGQ----AMMIKGDW  228 (299)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEcCCC----cCccCHHH
Confidence            3468999999999765 7999999999999999987542         24689999999999999863    46787766


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 043239          222 MTALGKEGVIINVGRGA  238 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~  238 (286)
                         +|+|+++||+|--.
T Consensus       229 ---vk~gavVIDvGin~  242 (299)
T PLN02516        229 ---IKPGAAVIDVGTNA  242 (299)
T ss_pred             ---cCCCCEEEEeeccc
Confidence               58999999998543

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.98  E-value=3.6e-05  Score=69.36  Aligned_cols=80  Identities=21%  Similarity=0.440  Sum_probs=65.7

Q ss_pred             cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.++.|+++.|||-+. +|++++..|...|+.|+.+...         ..++.+..++||+|+++++    ..+++..++
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~---------T~~l~~~~~~ADIvIsAvG----kp~~i~~~~  219 (278)
T PRK14172        153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK---------TKNLKEVCKKADILVVAIG----RPKFIDEEY  219 (278)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEcCC----CcCccCHHH
Confidence            3468999999999765 7999999999999999887642         2378999999999999987    355787776


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 043239          222 MTALGKEGVIINVGRGA  238 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~  238 (286)
                         +|+|+++||+|--.
T Consensus       220 ---ik~gavVIDvGin~  233 (278)
T PRK14172        220 ---VKEGAIVIDVGTSS  233 (278)
T ss_pred             ---cCCCcEEEEeeccc
Confidence               58999999997433

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.96  E-value=3.7e-05  Score=69.59  Aligned_cols=76  Identities=24%  Similarity=0.489  Sum_probs=63.7

Q ss_pred             ccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239          144 STLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM  222 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l  222 (286)
                      .++.||++.|||-+. +|++++..|...|+.|+.+...         ..++.+.+++||+|++++.    ..+++..++ 
T Consensus       155 i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~---------T~~L~~~~~~ADIvV~AvG----kp~~i~~~~-  220 (288)
T PRK14171        155 PNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK---------THNLSSITSKADIVVAAIG----SPLKLTAEY-  220 (288)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccC----CCCccCHHH-
Confidence            468999999999765 7999999999999999876532         2468999999999999987    346787766 


Q ss_pred             hcCCCCcEEEEcC
Q 043239          223 TALGKEGVIINVG  235 (286)
Q Consensus       223 ~~mk~g~ilvn~s  235 (286)
                        +|+|+++||+|
T Consensus       221 --vk~GavVIDvG  231 (288)
T PRK14171        221 --FNPESIVIDVG  231 (288)
T ss_pred             --cCCCCEEEEee
Confidence              58999999998

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.95  E-value=4.1e-05  Score=69.11  Aligned_cols=79  Identities=20%  Similarity=0.370  Sum_probs=65.1

Q ss_pred             ccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239          144 STLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM  222 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l  222 (286)
                      .++.|+++.|||-+. +|++++.+|...|+.|+.+...         ..++++.+++||+|+++++    ..+++..++ 
T Consensus       153 i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~---------T~nl~~~~~~ADIvI~AvG----k~~~i~~~~-  218 (282)
T PRK14182        153 VDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSR---------TADLAGEVGRADILVAAIG----KAELVKGAW-  218 (282)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEecC----CcCccCHHH-
Confidence            468999999999765 7999999999989999887542         2468899999999999987    356787766 


Q ss_pred             hcCCCCcEEEEcCCCc
Q 043239          223 TALGKEGVIINVGRGA  238 (286)
Q Consensus       223 ~~mk~g~ilvn~srg~  238 (286)
                        .|+|+++||+|--.
T Consensus       219 --ik~gaiVIDvGin~  232 (282)
T PRK14182        219 --VKEGAVVIDVGMNR  232 (282)
T ss_pred             --cCCCCEEEEeecee
Confidence              47999999998444

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.95  E-value=1.7e-05  Score=67.77  Aligned_cols=96  Identities=20%  Similarity=0.173  Sum_probs=67.2

Q ss_pred             cccCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC----------Cc-------ccccCHHHhhcCCCEEE
Q 043239          143 GSTLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------SY-------PFYANVSGLAADSDVLI  204 (286)
Q Consensus       143 ~~~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------~~-------~~~~~l~e~l~~aDiV~  204 (286)
                      +..++++++.|+|. |.+|+.+++.|...|++|.+++|+.++..          +.       ....++.+.++++|+|+
T Consensus        23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi  102 (194)
T cd01078          23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF  102 (194)
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence            34578899999995 99999999999999999999998764321          00       01123457788999999


Q ss_pred             EeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCH
Q 043239          205 VCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDE  242 (286)
Q Consensus       205 ~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~  242 (286)
                      .+.|....+  .+  ..-...+++.+++|+.+...++.
T Consensus       103 ~at~~g~~~--~~--~~~~~~~~~~vv~D~~~~~~~~~  136 (194)
T cd01078         103 AAGAAGVEL--LE--KLAWAPKPLAVAADVNAVPPVGI  136 (194)
T ss_pred             ECCCCCcee--ch--hhhcccCceeEEEEccCCCCCCc
Confidence            998855431  11  12223456789999987776544

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.95  E-value=3.5e-05  Score=71.47  Aligned_cols=80  Identities=19%  Similarity=0.345  Sum_probs=65.6

Q ss_pred             cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.++.||++.|||-+. +|+++|..|...|+.|+.+...         ..++.+.+++||+|+.++.    ..+++..++
T Consensus       226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~---------T~nl~~~~r~ADIVIsAvG----kp~~i~~d~  292 (364)
T PLN02616        226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------TKNPEEITREADIIISAVG----QPNMVRGSW  292 (364)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC---------CCCHHHHHhhCCEEEEcCC----CcCcCCHHH
Confidence            3468999999999765 7999999999999999877532         2478999999999999987    456787776


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 043239          222 MTALGKEGVIINVGRGA  238 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~  238 (286)
                         .|+|+++||+|--.
T Consensus       293 ---vK~GAvVIDVGIn~  306 (364)
T PLN02616        293 ---IKPGAVVIDVGINP  306 (364)
T ss_pred             ---cCCCCEEEeccccc
Confidence               58999999998433

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.95  E-value=1.9e-05  Score=73.07  Aligned_cols=84  Identities=14%  Similarity=0.179  Sum_probs=64.2

Q ss_pred             CCEEEEEcCChHHHHHHHHhcc-C-CCEEEEECCCCCCCC---------C--cccccCHHHhhcCCCEEEEeccCChhhh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVP-F-GCSIAYTSRKKKPGV---------S--YPFYANVSGLAADSDVLIVCCALTEETH  214 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~-~-g~~V~~~~r~~~~~~---------~--~~~~~~l~e~l~~aDiV~~~lp~~~~t~  214 (286)
                      -+++||||+|.+|+..++.+.. + ..+|.+|+|+.++..         +  ...+.+.++++++||+|++|+|.   ..
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s---~~  204 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPS---RK  204 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCC---CC
Confidence            4689999999999997776654 2 347999999877532         1  23357899999999999999875   35


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCC
Q 043239          215 HMINKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~srg  237 (286)
                      .++..+.   +|||+.+..+|.-
T Consensus       205 P~~~~~~---l~~g~~v~~vGs~  224 (325)
T TIGR02371       205 PVVKADW---VSEGTHINAIGAD  224 (325)
T ss_pred             cEecHHH---cCCCCEEEecCCC
Confidence            6776554   5899999989743

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.93  E-value=3.8e-05  Score=70.90  Aligned_cols=80  Identities=16%  Similarity=0.326  Sum_probs=65.3

Q ss_pred             cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.++.||++.|||-+. +|+++|..|...|+.|+.....         ..++.+..++||+|+.++.    ..+++..++
T Consensus       209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~---------T~nl~~~~~~ADIvIsAvG----kp~~v~~d~  275 (345)
T PLN02897        209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAF---------TKDPEQITRKADIVIAAAG----IPNLVRGSW  275 (345)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCC---------CCCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence            4469999999999765 7999999999999999876432         1368899999999999987    355787766


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 043239          222 MTALGKEGVIINVGRGA  238 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~  238 (286)
                         +|+|+++||+|--.
T Consensus       276 ---vk~GavVIDVGin~  289 (345)
T PLN02897        276 ---LKPGAVVIDVGTTP  289 (345)
T ss_pred             ---cCCCCEEEEccccc
Confidence               58999999998543

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.93  E-value=3.3e-05  Score=71.33  Aligned_cols=88  Identities=16%  Similarity=0.283  Sum_probs=62.9

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCC-------------CCC------cccccCHHHhh-cCCCEEEEecc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP-------------GVS------YPFYANVSGLA-ADSDVLIVCCA  208 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~-------------~~~------~~~~~~l~e~l-~~aDiV~~~lp  208 (286)
                      ++|+|||.|.||..+|..|...|++|..|+|+.+.             ..+      .....++.+.+ ..+|+|++++|
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk   80 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP   80 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence            47999999999999999999999999999986531             001      11235666766 58999999998


Q ss_pred             CChhhhhcccHHHHh-cCCCCcEEEEcCCCc
Q 043239          209 LTEETHHMINKDVMT-ALGKEGVIINVGRGA  238 (286)
Q Consensus       209 ~~~~t~~~i~~~~l~-~mk~g~ilvn~srg~  238 (286)
                      . ..+..++ ++..+ .++++..+|.+..|=
T Consensus        81 s-~~~~~~l-~~l~~~~l~~~~~vv~~~nGi  109 (326)
T PRK14620         81 T-QQLRTIC-QQLQDCHLKKNTPILICSKGI  109 (326)
T ss_pred             H-HHHHHHH-HHHHHhcCCCCCEEEEEEcCe
Confidence            3 4455544 33444 667777777776663

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.92  E-value=5.1e-05  Score=68.73  Aligned_cols=81  Identities=25%  Similarity=0.461  Sum_probs=66.2

Q ss_pred             cccCCCCEEEEEcCC-hHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLG-SIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G-~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.++.|+++.|||-+ .+|+++|..|...|+.|+.+.+.         ..++++.+++||+|++++.    ..+++..++
T Consensus       150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~---------T~~l~~~~~~ADIvIsAvG----kp~~i~~~~  216 (287)
T PRK14173        150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSK---------TQDLPAVTRRADVLVVAVG----RPHLITPEM  216 (287)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEecC----CcCccCHHH
Confidence            346899999999975 58999999999999999876532         2368899999999999986    346777766


Q ss_pred             HhcCCCCcEEEEcCCCcc
Q 043239          222 MTALGKEGVIINVGRGAL  239 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~  239 (286)
                         +|+|+++||+|.-.+
T Consensus       217 ---vk~GavVIDVGin~~  231 (287)
T PRK14173        217 ---VRPGAVVVDVGINRV  231 (287)
T ss_pred             ---cCCCCEEEEccCccc
Confidence               489999999986553

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=97.92  E-value=2.9e-05  Score=75.35  Aligned_cols=103  Identities=9%  Similarity=0.132  Sum_probs=75.2

Q ss_pred             CEEEEEcCChHHHHHHHHhccC--CCEEEEECCCCCCCC------------C------------cccccCHHHhhcCCCE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF--GCSIAYTSRKKKPGV------------S------------YPFYANVSGLAADSDV  202 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~--g~~V~~~~r~~~~~~------------~------------~~~~~~l~e~l~~aDi  202 (286)
                      ++|+|||+|.+|..+|..|...  |++|+++|.+.++..            +            .....+..+.+++||+
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv   81 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI   81 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence            6899999999999999999976  588999997664311            0            1112456678899999


Q ss_pred             EEEeccCCh-----------hhhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239          203 LIVCCALTE-----------ETHHMI--NKDVMTALGKEGVIINVGRGALIDEKELVHFLVR  251 (286)
Q Consensus       203 V~~~lp~~~-----------~t~~~i--~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~  251 (286)
                      +++|+|...           +...+.  -++.-+.++++.++|.-|+-.+=.++.+...+.+
T Consensus        82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~  143 (473)
T PLN02353         82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTH  143 (473)
T ss_pred             EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHh
Confidence            999997221           111221  2345667899999999999888777888887776

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.91  E-value=5.8e-05  Score=68.32  Aligned_cols=80  Identities=21%  Similarity=0.437  Sum_probs=64.8

Q ss_pred             cccCCCCEEEEEcCCh-HHHHHHHHhccC----CCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcc
Q 043239          143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPF----GCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMI  217 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~----g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i  217 (286)
                      +.++.||++.|||-+. +|+++|..|...    +..|+.....         ..++++.+++||+|+++++    ..+++
T Consensus       148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~---------T~~l~~~~~~ADIvV~AvG----~p~~i  214 (287)
T PRK14181        148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ---------SENLTEILKTADIIIAAIG----VPLFI  214 (287)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccC----CcCcc
Confidence            3468999999999765 799999999987    7888876532         2378999999999999987    34678


Q ss_pred             cHHHHhcCCCCcEEEEcCCCc
Q 043239          218 NKDVMTALGKEGVIINVGRGA  238 (286)
Q Consensus       218 ~~~~l~~mk~g~ilvn~srg~  238 (286)
                      ..++   +|+|+++||+|--.
T Consensus       215 ~~~~---ik~GavVIDvGin~  232 (287)
T PRK14181        215 KEEM---IAEKAVIVDVGTSR  232 (287)
T ss_pred             CHHH---cCCCCEEEEecccc
Confidence            7776   57999999998544

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.90  E-value=4.2e-05  Score=71.27  Aligned_cols=87  Identities=16%  Similarity=0.185  Sum_probs=64.3

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-------------C-C------cccccCHHHhhcCCCEEEEecc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-------------V-S------YPFYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-------------~-~------~~~~~~l~e~l~~aDiV~~~lp  208 (286)
                      ++|+|||.|.||..+|..|...| .|..|.++++..             . +      .....++.+.++.+|+|++++|
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp   86 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP   86 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence            68999999999999999999988 577776653211             0 1      1123577788999999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 043239          209 LTEETHHMINKDVMTALGKEGVIINVGRGA  238 (286)
Q Consensus       209 ~~~~t~~~i~~~~l~~mk~g~ilvn~srg~  238 (286)
                       +..++.++ ++..+.++++..+|++..|=
T Consensus        87 -s~~~~~vl-~~i~~~l~~~~~vIsl~kGi  114 (341)
T PRK12439         87 -SHGFRGVL-TELAKELRPWVPVVSLVKGL  114 (341)
T ss_pred             -HHHHHHHH-HHHHhhcCCCCEEEEEEeCC
Confidence             44555554 34556678888899998763

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.88  E-value=2.9e-05  Score=72.06  Aligned_cols=95  Identities=22%  Similarity=0.332  Sum_probs=71.2

Q ss_pred             CcccCCCCEEEEEcC-ChHHHHHHHHhcc-CCC-EEEEECCCCCCCCC------cccccCHHHhhcCCCEEEEeccCChh
Q 043239          142 LGSTLGGKRVGIVGL-GSIGSEVAKRLVP-FGC-SIAYTSRKKKPGVS------YPFYANVSGLAADSDVLIVCCALTEE  212 (286)
Q Consensus       142 ~~~~l~g~~vgIiG~-G~iG~~~A~~l~~-~g~-~V~~~~r~~~~~~~------~~~~~~l~e~l~~aDiV~~~lp~~~~  212 (286)
                      ++.++.+++|.|+|. |.||+.+++.|.. .|. +++.++|+..+...      .....++++.+.++|+|+.+...   
T Consensus       149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~---  225 (340)
T PRK14982        149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASM---  225 (340)
T ss_pred             hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcC---
Confidence            455789999999998 8999999999974 464 88899987654321      11234677899999999876532   


Q ss_pred             hhh-cccHHHHhcCCCCcEEEEcCCCcccCH
Q 043239          213 THH-MINKDVMTALGKEGVIINVGRGALIDE  242 (286)
Q Consensus       213 t~~-~i~~~~l~~mk~g~ilvn~srg~~vd~  242 (286)
                      ... +++.+.   ++++.++||+|+..=||.
T Consensus       226 ~~~~~I~~~~---l~~~~~viDiAvPRDVd~  253 (340)
T PRK14982        226 PKGVEIDPET---LKKPCLMIDGGYPKNLDT  253 (340)
T ss_pred             CcCCcCCHHH---hCCCeEEEEecCCCCCCc
Confidence            234 377764   479999999999977775

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.86  E-value=6.2e-05  Score=68.13  Aligned_cols=77  Identities=19%  Similarity=0.388  Sum_probs=63.8

Q ss_pred             cccCCCCEEEEEcCCh-HHHHHHHHhcc----CCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcc
Q 043239          143 GSTLGGKRVGIVGLGS-IGSEVAKRLVP----FGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMI  217 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~----~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i  217 (286)
                      +.++.||++.|||-+. +|++++..|..    .+++|+.....         ..++.+.+++||+|+.+++    ..+++
T Consensus       152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~---------t~~l~~~~~~ADIVI~AvG----~p~li  218 (286)
T PRK14184        152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSR---------TPDLAEECREADFLFVAIG----RPRFV  218 (286)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCC---------chhHHHHHHhCCEEEEecC----CCCcC
Confidence            3468999999999765 79999999998    78888776532         2478999999999999985    45678


Q ss_pred             cHHHHhcCCCCcEEEEcC
Q 043239          218 NKDVMTALGKEGVIINVG  235 (286)
Q Consensus       218 ~~~~l~~mk~g~ilvn~s  235 (286)
                      .++++   |+|+++||+|
T Consensus       219 ~~~~v---k~GavVIDVG  233 (286)
T PRK14184        219 TADMV---KPGAVVVDVG  233 (286)
T ss_pred             CHHHc---CCCCEEEEee
Confidence            87775   8999999998

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=97.85  E-value=9.5e-05  Score=58.18  Aligned_cols=103  Identities=19%  Similarity=0.373  Sum_probs=72.8

Q ss_pred             CEEEEEc----CChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhc
Q 043239          149 KRVGIVG----LGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTA  224 (286)
Q Consensus       149 ~~vgIiG----~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~  224 (286)
                      |+|+|||    -+..|..+.+.|++.|++|+..++......+...+.++.|.-...|++++++|. +.+..+++ +. ..
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~-~~~~~~v~-~~-~~   77 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPP-DKVPEIVD-EA-AA   77 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-H-HHHHHHHH-HH-HH
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCH-HHHHHHHH-HH-HH
Confidence            5899999    789999999999999999999999887777777889999855789999999983 34444443 22 23


Q ss_pred             CCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEE
Q 043239          225 LGKEGVIINVGRGALIDEKELVHFLVRGSLVELV  258 (286)
Q Consensus       225 mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~  258 (286)
                      +..+.+++..+    ..++.+.+.+++..++-.+
T Consensus        78 ~g~~~v~~~~g----~~~~~~~~~a~~~gi~vig  107 (116)
T PF13380_consen   78 LGVKAVWLQPG----AESEELIEAAREAGIRVIG  107 (116)
T ss_dssp             HT-SEEEE-TT----S--HHHHHHHHHTT-EEEE
T ss_pred             cCCCEEEEEcc----hHHHHHHHHHHHcCCEEEe
Confidence            35667888887    7788899999998887543

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.85  E-value=5.8e-05  Score=67.72  Aligned_cols=81  Identities=23%  Similarity=0.472  Sum_probs=66.4

Q ss_pred             cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.+++|+++.|||-++ +|++|+..|...++.|++....         ..++.+..++||++++++-    -.+++..++
T Consensus       151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~---------T~~l~~~~k~ADIvv~AvG----~p~~i~~d~  217 (283)
T COG0190         151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSR---------TKDLASITKNADIVVVAVG----KPHFIKADM  217 (283)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCC---------CCCHHHHhhhCCEEEEecC----Ccccccccc
Confidence            4479999999999987 5999999999999999987653         2578899999999999975    355666544


Q ss_pred             HhcCCCCcEEEEcCCCcc
Q 043239          222 MTALGKEGVIINVGRGAL  239 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~  239 (286)
                         .|+|+++||++--.+
T Consensus       218 ---vk~gavVIDVGinrv  232 (283)
T COG0190         218 ---VKPGAVVIDVGINRV  232 (283)
T ss_pred             ---ccCCCEEEecCCccc
Confidence               689999999985443

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.84  E-value=9.4e-05  Score=67.14  Aligned_cols=79  Identities=18%  Similarity=0.411  Sum_probs=63.4

Q ss_pred             cccCCCCEEEEEcCCh-HHHHHHHHhccC----CCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcc
Q 043239          143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPF----GCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMI  217 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~----g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i  217 (286)
                      +.++.||++.|||-+. +|+++|..|...    ++.|+++...         ..++.+.+++||+|+++++    ..+++
T Consensus       152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~---------T~nl~~~~~~ADIvIsAvG----kp~~i  218 (293)
T PRK14185        152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR---------SKNLKKECLEADIIIAALG----QPEFV  218 (293)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC---------CCCHHHHHhhCCEEEEccC----CcCcc
Confidence            3468999999999765 799999999876    6788876432         2478999999999999987    34567


Q ss_pred             cHHHHhcCCCCcEEEEcCCC
Q 043239          218 NKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       218 ~~~~l~~mk~g~ilvn~srg  237 (286)
                      ..++   +|+|+++||+|--
T Consensus       219 ~~~~---vk~gavVIDvGin  235 (293)
T PRK14185        219 KADM---VKEGAVVIDVGTT  235 (293)
T ss_pred             CHHH---cCCCCEEEEecCc
Confidence            7665   5899999999853

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.82  E-value=0.00011  Score=66.58  Aligned_cols=80  Identities=15%  Similarity=0.389  Sum_probs=65.3

Q ss_pred             cccCCCCEEEEEcCC-hHHHHHHHHhcc--CCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239          143 GSTLGGKRVGIVGLG-SIGSEVAKRLVP--FGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G-~iG~~~A~~l~~--~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      +.++.|+++.|||-+ .+|+++|..|..  .++.|+++...         ..++.+.+++||+|++++..    .+++..
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~---------T~~l~~~~k~ADIvV~AvGk----p~~i~~  219 (284)
T PRK14193        153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG---------TRDLAAHTRRADIIVAAAGV----AHLVTA  219 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC---------CCCHHHHHHhCCEEEEecCC----cCccCH
Confidence            446899999999975 589999999987  68999877542         24789999999999999873    457877


Q ss_pred             HHHhcCCCCcEEEEcCCCc
Q 043239          220 DVMTALGKEGVIINVGRGA  238 (286)
Q Consensus       220 ~~l~~mk~g~ilvn~srg~  238 (286)
                      ++   +|+|+++||+|.-.
T Consensus       220 ~~---ik~GavVIDvGin~  235 (284)
T PRK14193        220 DM---VKPGAAVLDVGVSR  235 (284)
T ss_pred             HH---cCCCCEEEEccccc
Confidence            66   58999999998555

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.81  E-value=8.5e-05  Score=67.63  Aligned_cols=79  Identities=20%  Similarity=0.400  Sum_probs=63.5

Q ss_pred             ccCCCCEEEEEcCCh-HHHHHHHHhcc----CCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhccc
Q 043239          144 STLGGKRVGIVGLGS-IGSEVAKRLVP----FGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMIN  218 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~-iG~~~A~~l~~----~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~  218 (286)
                      .++.|+++.|||-+. +|+++|..|..    .+..|+.....         ..++.+.+++||+|+.+++.    .+++.
T Consensus       155 i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~---------t~~l~~~~~~ADIvI~Avg~----~~li~  221 (295)
T PRK14174        155 IETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSA---------TKDIPSYTRQADILIAAIGK----ARFIT  221 (295)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCC---------chhHHHHHHhCCEEEEecCc----cCccC
Confidence            468999999999765 79999999876    57888766532         24688999999999999853    26788


Q ss_pred             HHHHhcCCCCcEEEEcCCCc
Q 043239          219 KDVMTALGKEGVIINVGRGA  238 (286)
Q Consensus       219 ~~~l~~mk~g~ilvn~srg~  238 (286)
                      .+++   |+|+++||+|-..
T Consensus       222 ~~~v---k~GavVIDVgi~~  238 (295)
T PRK14174        222 ADMV---KPGAVVIDVGINR  238 (295)
T ss_pred             HHHc---CCCCEEEEeeccc
Confidence            8876   8999999998443

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.80  E-value=7.6e-05  Score=68.63  Aligned_cols=106  Identities=19%  Similarity=0.227  Sum_probs=73.1

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC---CCcc--------------cccCHHHhhcCCCEEEEeccCC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG---VSYP--------------FYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~---~~~~--------------~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      .++|+|||.|.||..+|..|...|++|.++.|+....   .+..              ...+. +....+|+|++|+|..
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK~~   83 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLKTT   83 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEecCC
Confidence            3689999999999999999999999999888865221   0100              01122 3457899999999854


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEE
Q 043239          211 EETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVEL  257 (286)
Q Consensus       211 ~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga  257 (286)
                       ++...+ +...+.+++++.++....| +-.++.+.+.+...++.++
T Consensus        84 -~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g  127 (313)
T PRK06249         84 -ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGG  127 (313)
T ss_pred             -ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence             333332 3445556788888888776 3456677777766666544

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.80  E-value=3.7e-05  Score=70.53  Aligned_cols=84  Identities=8%  Similarity=0.094  Sum_probs=64.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHhcc-CCC-EEEEECCCCCCCC---------Cccc-ccCHHHhhcCCCEEEEeccCChhhh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVP-FGC-SIAYTSRKKKPGV---------SYPF-YANVSGLAADSDVLIVCCALTEETH  214 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~-~g~-~V~~~~r~~~~~~---------~~~~-~~~l~e~l~~aDiV~~~lp~~~~t~  214 (286)
                      ..++++|||.|.+|+..++.+.. ++. +|.+|+|+.++..         +... ..+++++++++|+|+++.|..   .
T Consensus       124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~---~  200 (304)
T PRK07340        124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR---T  200 (304)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---C
Confidence            45799999999999999999864 565 6999999876532         1111 457889999999999998754   5


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCC
Q 043239          215 HMINKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~srg  237 (286)
                      .++..    .+|||+.+..+|.-
T Consensus       201 Pl~~~----~~~~g~hi~~iGs~  219 (304)
T PRK07340        201 PVYPE----AARAGRLVVAVGAF  219 (304)
T ss_pred             ceeCc----cCCCCCEEEecCCC
Confidence            67754    26999999999843

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.79  E-value=6e-05  Score=70.38  Aligned_cols=102  Identities=19%  Similarity=0.271  Sum_probs=76.9

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------------------------C-cccccCHHHhhcCCCEE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------------------------S-YPFYANVSGLAADSDVL  203 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------------------------~-~~~~~~l~e~l~~aDiV  203 (286)
                      .+|||+|+|-||.++|-.+...|++|+++|.+.++..                        + .+...+. +.++.||++
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~-~~l~~~dv~   88 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDP-EELKECDVF   88 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecCh-hhcccCCEE
Confidence            7999999999999999999999999999998765421                        0 1112233 345699999


Q ss_pred             EEeccCChhhh-------hccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          204 IVCCALTEETH-------HMIN--KDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       204 ~~~lp~~~~t~-------~~i~--~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      ++|+| ||-+.       .+.+  +...+.||+|.++|-=|+-.+=.++.+...+-+.
T Consensus        89 iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~  145 (436)
T COG0677          89 IICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEE  145 (436)
T ss_pred             EEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhh
Confidence            99998 33322       2221  3356779999999999998888889998887774

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.79  E-value=0.0001  Score=67.02  Aligned_cols=80  Identities=19%  Similarity=0.373  Sum_probs=63.7

Q ss_pred             cccCCCCEEEEEcCC-hHHHHHHHHhccC----CCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcc
Q 043239          143 GSTLGGKRVGIVGLG-SIGSEVAKRLVPF----GCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMI  217 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G-~iG~~~A~~l~~~----g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i  217 (286)
                      +.++.|+++.|||-+ .+|+++|..|...    ++.|+...+.         ..++.+.+++||+|++++.    ..+++
T Consensus       156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~---------T~~l~~~~~~ADIvVsAvG----kp~~i  222 (297)
T PRK14168        156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR---------SKNLARHCQRADILIVAAG----VPNLV  222 (297)
T ss_pred             CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC---------CcCHHHHHhhCCEEEEecC----CcCcc
Confidence            446899999999965 5899999999877    6888876432         2468899999999999986    34567


Q ss_pred             cHHHHhcCCCCcEEEEcCCCc
Q 043239          218 NKDVMTALGKEGVIINVGRGA  238 (286)
Q Consensus       218 ~~~~l~~mk~g~ilvn~srg~  238 (286)
                      ..++   +|+|+++||+|.-.
T Consensus       223 ~~~~---ik~gavVIDvGin~  240 (297)
T PRK14168        223 KPEW---IKPGATVIDVGVNR  240 (297)
T ss_pred             CHHH---cCCCCEEEecCCCc
Confidence            7766   58999999998443

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.78  E-value=0.00011  Score=63.34  Aligned_cols=96  Identities=21%  Similarity=0.227  Sum_probs=70.3

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCC---CCCCC---------C-----------------cc-----
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRK---KKPGV---------S-----------------YP-----  188 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~---~~~~~---------~-----------------~~-----  188 (286)
                      ..|..++|+|+|+|.+|..+|+.|...|. +++.+|+.   .+...         +                 ..     
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~   96 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD   96 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence            35888999999999999999999999999 69998876   21100         0                 00     


Q ss_pred             ---cccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 043239          189 ---FYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALI  240 (286)
Q Consensus       189 ---~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~v  240 (286)
                         ...++.++++++|+|+-| .++.+++..+..+....++...++...+-++-.
T Consensus        97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~g~~g~~  150 (200)
T TIGR02354        97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAASGLAGYD  150 (200)
T ss_pred             eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEeccccCC
Confidence               012345678899999988 578889988888888888776666654444433

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.77  E-value=0.00014  Score=66.13  Aligned_cols=80  Identities=18%  Similarity=0.382  Sum_probs=63.5

Q ss_pred             cccCCCCEEEEEcCCh-HHHHHHHHhccC----CCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcc
Q 043239          143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPF----GCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMI  217 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~----g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i  217 (286)
                      +.++.|+++.|||-+. +|+++|..|...    ++.|++....         ..++.+..++||+|++++.    ..+++
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~---------T~~l~~~~~~ADIvIsAvG----kp~~i  218 (297)
T PRK14167        152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR---------TDDLAAKTRRADIVVAAAG----VPELI  218 (297)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccC----CcCcc
Confidence            3468999999999765 799999999876    7888876432         2378899999999999876    34577


Q ss_pred             cHHHHhcCCCCcEEEEcCCCc
Q 043239          218 NKDVMTALGKEGVIINVGRGA  238 (286)
Q Consensus       218 ~~~~l~~mk~g~ilvn~srg~  238 (286)
                      ..++   +|+|+++||+|--.
T Consensus       219 ~~~~---ik~gaiVIDvGin~  236 (297)
T PRK14167        219 DGSM---LSEGATVIDVGINR  236 (297)
T ss_pred             CHHH---cCCCCEEEEccccc
Confidence            7766   58999999998433

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.75  E-value=7.4e-05  Score=69.23  Aligned_cols=83  Identities=12%  Similarity=0.126  Sum_probs=64.3

Q ss_pred             CCEEEEEcCChHHHHHHHHhc-cCCC-EEEEECCCCCCCC----------Cc--ccccCHHHhhcCCCEEEEeccCChhh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLV-PFGC-SIAYTSRKKKPGV----------SY--PFYANVSGLAADSDVLIVCCALTEET  213 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~-~~g~-~V~~~~r~~~~~~----------~~--~~~~~l~e~l~~aDiV~~~lp~~~~t  213 (286)
                      .++++|||.|.+|+..++.+. ..+. +|.+|+|+.++..          +.  ....++++++++||+|+++.|..   
T Consensus       129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~---  205 (326)
T TIGR02992       129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE---  205 (326)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC---
Confidence            469999999999999999986 4675 6999999876532          11  22568899999999999998753   


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCC
Q 043239          214 HHMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       214 ~~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                      ..++..+.   +|+|+.+..++.
T Consensus       206 ~p~i~~~~---l~~g~~i~~vg~  225 (326)
T TIGR02992       206 TPILHAEW---LEPGQHVTAMGS  225 (326)
T ss_pred             CcEecHHH---cCCCcEEEeeCC
Confidence            46776554   689998887763

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.68  E-value=3.1e-05  Score=59.58  Aligned_cols=86  Identities=21%  Similarity=0.286  Sum_probs=56.2

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-CCcc-cccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-VSYP-FYANVSGLAADSDVLIVCCALTEETHHMINKDVM  222 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-~~~~-~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l  222 (286)
                      +++|++|.|||.|.+|..-++.|...|.+|+++++..+.. .... ....+++.+.++|+|+.+.+. ++    +++...
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~at~d-~~----~n~~i~   78 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAATDD-PE----LNEAIY   78 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE-SS--HH----HHHHHH
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEecCCC-HH----HHHHHH
Confidence            5889999999999999999999999999999999874100 1111 123345668889999887653 22    334444


Q ss_pred             hcCCCCcEEEEcC
Q 043239          223 TALGKEGVIINVG  235 (286)
Q Consensus       223 ~~mk~g~ilvn~s  235 (286)
                      ...+.-.+++|++
T Consensus        79 ~~a~~~~i~vn~~   91 (103)
T PF13241_consen   79 ADARARGILVNVV   91 (103)
T ss_dssp             HHHHHTTSEEEET
T ss_pred             HHHhhCCEEEEEC
Confidence            4555455677774

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=97.68  E-value=0.0002  Score=65.50  Aligned_cols=115  Identities=13%  Similarity=0.158  Sum_probs=83.7

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------------C-------------cccccCHHHhhc
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------S-------------YPFYANVSGLAA  198 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~-------------~~~~~~l~e~l~  198 (286)
                      -++|+|||.|.||+.+|..+...|++|..+|++.+...                +             .....++. .++
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~   81 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK   81 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence            36899999999999999999997799999999854211                0             01122332 689


Q ss_pred             CCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCC
Q 043239          199 DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSL  266 (286)
Q Consensus       199 ~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~  266 (286)
                      +||+|+=++|...+.+.-+-++.=...+|+++|-.-  -+-+.-.++.+++ ++.=+..++=.|.+.+
T Consensus        82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASN--TSsl~it~ia~~~-~rper~iG~HFfNP~~  146 (307)
T COG1250          82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASN--TSSLSITELAEAL-KRPERFIGLHFFNPVP  146 (307)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeec--cCCCCHHHHHHHh-CCchhEEEEeccCCCC
Confidence            999999999988887777767777778899876532  3335566777777 5555567787786653

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.66  E-value=9.9e-05  Score=68.35  Aligned_cols=83  Identities=13%  Similarity=0.164  Sum_probs=63.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHhc-cCCC-EEEEECCCCCCCC----------C--cccccCHHHhhcCCCEEEEeccCChh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLV-PFGC-SIAYTSRKKKPGV----------S--YPFYANVSGLAADSDVLIVCCALTEE  212 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~-~~g~-~V~~~~r~~~~~~----------~--~~~~~~l~e~l~~aDiV~~~lp~~~~  212 (286)
                      ..++++|||.|.+|+..++.+. ..+. +|.+|+|+.++..          +  ...+.+++++++++|+|++|.|..  
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~--  203 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK--  203 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence            3568999999999999988764 4565 6899999876532          1  123578899999999999998854  


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCC
Q 043239          213 THHMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       213 t~~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                       ..++.    ..+|+|+.++.++.
T Consensus       204 -~p~i~----~~l~~G~hV~~iGs  222 (325)
T PRK08618        204 -TPVFS----EKLKKGVHINAVGS  222 (325)
T ss_pred             -CcchH----HhcCCCcEEEecCC
Confidence             45554    45699999988864

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.63  E-value=0.00012  Score=67.57  Aligned_cols=82  Identities=15%  Similarity=0.183  Sum_probs=63.9

Q ss_pred             CCEEEEEcCChHHHHHHHHhcc-CCC-EEEEECCCCCCCC---------C--cccccCHHHhhcCCCEEEEeccCChhhh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVP-FGC-SIAYTSRKKKPGV---------S--YPFYANVSGLAADSDVLIVCCALTEETH  214 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~-~g~-~V~~~~r~~~~~~---------~--~~~~~~l~e~l~~aDiV~~~lp~~~~t~  214 (286)
                      -++++|+|.|..++..++.+.. +.. +|.+|+|+.++..         +  .....+.++++++||+|+++.+   ++.
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~---s~~  204 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTP---SRE  204 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecC---CCC
Confidence            4599999999999999988764 333 7999999987632         1  2235789999999999999876   346


Q ss_pred             hcccHHHHhcCCCCcEEEEcC
Q 043239          215 HMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      .+++.+.   +|||+.++.+|
T Consensus       205 P~~~~~~---l~~G~hi~~iG  222 (315)
T PRK06823        205 PLLQAED---IQPGTHITAVG  222 (315)
T ss_pred             ceeCHHH---cCCCcEEEecC
Confidence            7776654   68999999887

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.62  E-value=0.00017  Score=73.54  Aligned_cols=113  Identities=12%  Similarity=0.093  Sum_probs=84.7

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------------C-------------cccccCHHHhhcC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------S-------------YPFYANVSGLAAD  199 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~-------------~~~~~~l~e~l~~  199 (286)
                      ++|+|||.|.||..+|..+...|++|+.+|++.+...                +             .....++ +.+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER  392 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            5799999999999999999999999999998875421                0             1112355 45799


Q ss_pred             CCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239          200 SDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS  265 (286)
Q Consensus       200 aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e  265 (286)
                      ||+|+=++|...+.+.-+-++.-..++++++|...  -+-+.-..|.+.+. ..=+.+++-.|.+.
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasN--TSsl~i~~la~~~~-~p~r~~g~Hff~P~  455 (715)
T PRK11730        393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASN--TSTISISLLAKALK-RPENFCGMHFFNPV  455 (715)
T ss_pred             CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEc--CCCCCHHHHHhhcC-CCccEEEEecCCcc
Confidence            99999999988888877777777788999887543  34466677777775 34445677777654

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.60  E-value=0.00033  Score=64.75  Aligned_cols=113  Identities=19%  Similarity=0.177  Sum_probs=73.3

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCC-CEEEEECCCCCCCCC---------------cc--cccCHHHhhcCCCEEEEec
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFG-CSIAYTSRKKKPGVS---------------YP--FYANVSGLAADSDVLIVCC  207 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g-~~V~~~~r~~~~~~~---------------~~--~~~~l~e~l~~aDiV~~~l  207 (286)
                      ...++|+|||.|.||..+|..+...| .++..+|++.+...+               ..  ...+.+ .+++||+|+++.
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita   81 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA   81 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence            45679999999999999999988777 589999987654220               01  124555 779999999998


Q ss_pred             --cCChh-hh--------hcccHH---HHhcCCCCcEEEEcCCCcccCHHHHHHHHH--hCCeeEEE--ee
Q 043239          208 --ALTEE-TH--------HMINKD---VMTALGKEGVIINVGRGALIDEKELVHFLV--RGSLVELV--LM  260 (286)
Q Consensus       208 --p~~~~-t~--------~~i~~~---~l~~mk~g~ilvn~srg~~vd~~al~~al~--~~~i~ga~--lD  260 (286)
                        |..+. ++        .++ ++   .+....|.+++++++...-+-...+.+.-.  ..++.|.+  ||
T Consensus        82 g~~~~~g~~r~dll~~n~~i~-~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld  151 (319)
T PTZ00117         82 GVQRKEEMTREDLLTINGKIM-KSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD  151 (319)
T ss_pred             CCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence              33320 00        111 12   233346788999997765555555555432  45666665  55

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.60  E-value=0.0002  Score=69.79  Aligned_cols=101  Identities=16%  Similarity=0.222  Sum_probs=69.5

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCc-----ccccCHHHh--hcCCCEEEEeccCChhhhh
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY-----PFYANVSGL--AADSDVLIVCCALTEETHH  215 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~-----~~~~~l~e~--l~~aDiV~~~lp~~~~t~~  215 (286)
                      +..+.+++++|+|.|.+|++++..|...|++|.+++|+.++....     ....+++++  +.++|+|++|+|....   
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g~~---  403 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPSVT---  403 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCCCc---
Confidence            446789999999999999999999999999999999876542210     011122222  5789999999997642   


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          216 MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       216 ~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                       +. ..+.     .+++|+.-.+....  ++++.++.++.
T Consensus       404 -~~-~~l~-----~~v~D~~Y~P~~T~--ll~~A~~~G~~  434 (477)
T PRK09310        404 -IP-KAFP-----PCVVDINTLPKHSP--YTQYARSQGSS  434 (477)
T ss_pred             -ch-hHHh-----hhEEeccCCCCCCH--HHHHHHHCcCE
Confidence             22 2222     38899987764433  66777765543

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.60  E-value=6.9e-05  Score=69.07  Aligned_cols=87  Identities=13%  Similarity=0.148  Sum_probs=55.5

Q ss_pred             CEEEEEcCChHHHHHHHHhcc-CCC-EEEEECCCCCCCC-----------CcccccCHHHhhcCCCEEEEeccCChhhhh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVP-FGC-SIAYTSRKKKPGV-----------SYPFYANVSGLAADSDVLIVCCALTEETHH  215 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~-~g~-~V~~~~r~~~~~~-----------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~  215 (286)
                      ++++|||.|..|...++.+.. ++. +|.+|+|++++..           ....+.+.++++++||+|+.|.|.+..+ .
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P  207 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P  207 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence            489999999999999998765 555 7999999875421           1234678999999999999997754322 6


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcc
Q 043239          216 MINKDVMTALGKEGVIINVGRGAL  239 (286)
Q Consensus       216 ~i~~~~l~~mk~g~ilvn~srg~~  239 (286)
                      +++.+   .+++|+.++.+|....
T Consensus       208 ~~~~~---~l~~g~hi~~iGs~~~  228 (313)
T PF02423_consen  208 VFDAE---WLKPGTHINAIGSYTP  228 (313)
T ss_dssp             SB-GG---GS-TT-EEEE-S-SST
T ss_pred             cccHH---HcCCCcEEEEecCCCC
Confidence            77655   5789999999986544

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.60  E-value=0.00018  Score=66.06  Aligned_cols=111  Identities=14%  Similarity=0.169  Sum_probs=74.4

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-------------C----cccccCHHHhhcCCCEEEEeccCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-------------S----YPFYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-------------~----~~~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      ++|+|||.|.||..+|..+...|. +|+.+|...+...             .    .....+.++ +++||+|+++.+..
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p   80 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP   80 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence            589999999999999999988776 8999998544221             0    011246666 78999999998732


Q ss_pred             hh-----------hhhcccH--HHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCeeEEE--ee
Q 043239          211 EE-----------THHMINK--DVMTALGKEGVIINVGRGALIDEKELVHF--LVRGSLVELV--LM  260 (286)
Q Consensus       211 ~~-----------t~~~i~~--~~l~~mk~g~ilvn~srg~~vd~~al~~a--l~~~~i~ga~--lD  260 (286)
                      ..           +..++..  +.+....+.+++|+++..-=+-...+.+.  +...++-|.+  ||
T Consensus        81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld  147 (305)
T TIGR01763        81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD  147 (305)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence            11           1111111  11223357889999987766666666666  6666777775  67

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.58  E-value=0.00016  Score=68.07  Aligned_cols=100  Identities=15%  Similarity=0.175  Sum_probs=73.3

Q ss_pred             CEEEEEcCChHHHHHHHHhccCC-CEEEEECCCCCCCC---------------CcccccCHHHhhcCCCEEEEeccCChh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFG-CSIAYTSRKKKPGV---------------SYPFYANVSGLAADSDVLIVCCALTEE  212 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g-~~V~~~~r~~~~~~---------------~~~~~~~l~e~l~~aDiV~~~lp~~~~  212 (286)
                      ++|.|||.|.+|+.+|..|.+.| .+|++.+|+.++..               .+.....+.+++++.|+|+.++|..-.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~   81 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD   81 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence            68999999999999999999988 89999999965432               011234677899999999999985422


Q ss_pred             hhhcccHHHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          213 THHMINKDVM-TALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       213 t~~~i~~~~l-~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                            ...+ ..++.|.-++|++-.+..- .++.+..++.++.
T Consensus        82 ------~~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit  118 (389)
T COG1748          82 ------LTILKACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGIT  118 (389)
T ss_pred             ------HHHHHHHHHhCCCEEEcccCCchh-hhhhHHHHHcCeE
Confidence                  2222 3457788888988766543 6666666666554

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.56  E-value=0.00018  Score=65.45  Aligned_cols=104  Identities=13%  Similarity=0.103  Sum_probs=71.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCCCc-------------ccccCHHHhhcCCCEEEEeccCCh
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVSY-------------PFYANVSGLAADSDVLIVCCALTE  211 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~~~-------------~~~~~l~e~l~~aDiV~~~lp~~~  211 (286)
                      +.++++.|+|.|.+|++++..|...|+ +|++++|+.++....             ....++.+.++++|+|+.+.|..-
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm  204 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGM  204 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCC
Confidence            567899999999999999999999998 799999987653210             112345567788999999988642


Q ss_pred             hh--hhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239          212 ET--HHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       212 ~t--~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i  254 (286)
                      ..  ...++.   +.++++.+++|+.-.. .++. ++++.++.++
T Consensus       205 ~~~~~~~~~~---~~l~~~~~v~DivY~P-~~T~-ll~~A~~~G~  244 (284)
T PRK12549        205 AKHPGLPLPA---ELLRPGLWVADIVYFP-LETE-LLRAARALGC  244 (284)
T ss_pred             CCCCCCCCCH---HHcCCCcEEEEeeeCC-CCCH-HHHHHHHCCC
Confidence            11  112332   3467888999997655 3444 4444444433

>PRK06444 prephenate dehydrogenase; Provisional

Probab=97.55  E-value=0.00014  Score=62.52  Aligned_cols=81  Identities=10%  Similarity=0.122  Sum_probs=57.0

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCC
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGK  227 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~  227 (286)
                      ++++|||. |.||+.+++.++..|+.|.                     +++||+|++|+|.. .+..++     ..+. 
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~---------------------~~~~DlVilavPv~-~~~~~i-----~~~~-   52 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGLGVY---------------------IKKADHAFLSVPID-AALNYI-----ESYD-   52 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCCEEE---------------------ECCCCEEEEeCCHH-HHHHHH-----HHhC-
Confidence            48999998 9999999999999999985                     36899999999943 333333     2232 


Q ss_pred             CcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCC
Q 043239          228 EGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRS  271 (286)
Q Consensus       228 g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~  271 (286)
                       .+++|++.-+.    .+.++         ..++....|++++.
T Consensus        53 -~~v~Dv~SvK~----~i~~~---------~~~~vg~HPMfGp~   82 (197)
T PRK06444         53 -NNFVEISSVKW----PFKKY---------SGKIVSIHPLFGPM   82 (197)
T ss_pred             -CeEEeccccCH----HHHHh---------cCCEEecCCCCCCC
Confidence             37999975543    12222         23567777777644

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.54  E-value=0.00019  Score=65.78  Aligned_cols=83  Identities=17%  Similarity=0.164  Sum_probs=63.3

Q ss_pred             CCEEEEEcCChHHHHHHHHhcc-CCC-EEEEECCCCCCCC----------C--cccccCHHHhhcCCCEEEEeccCChhh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVP-FGC-SIAYTSRKKKPGV----------S--YPFYANVSGLAADSDVLIVCCALTEET  213 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~-~g~-~V~~~~r~~~~~~----------~--~~~~~~l~e~l~~aDiV~~~lp~~~~t  213 (286)
                      -+++||||.|..|...++.+.. +.. +|.+|+|+.++..          +  .....++++++.+||+|+.+.|.   +
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s---~  193 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNS---D  193 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCC---C
Confidence            4699999999999999888775 344 7999999987532          1  22357899999999999998764   4


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCC
Q 043239          214 HHMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       214 ~~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                      ..++..+.   +|||+.+.-+|.
T Consensus       194 ~P~~~~~~---l~pg~hV~aiGs  213 (301)
T PRK06407        194 TPIFNRKY---LGDEYHVNLAGS  213 (301)
T ss_pred             CcEecHHH---cCCCceEEecCC
Confidence            57776654   578887766653

>PRK06046 alanine dehydrogenase; Validated

Probab=97.54  E-value=0.00019  Score=66.52  Aligned_cols=82  Identities=17%  Similarity=0.272  Sum_probs=62.2

Q ss_pred             CCEEEEEcCChHHHHHHHHhcc-CCC-EEEEECCCCCCCC----------C--cccccCHHHhhcCCCEEEEeccCChhh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVP-FGC-SIAYTSRKKKPGV----------S--YPFYANVSGLAADSDVLIVCCALTEET  213 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~-~g~-~V~~~~r~~~~~~----------~--~~~~~~l~e~l~~aDiV~~~lp~~~~t  213 (286)
                      -+++||||+|.+|+..++.+.. .+. +|.+|+|+.+...          +  ...+.+++++++ +|+|++|.|..   
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~---  204 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR---  204 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence            3589999999999999998874 455 5788999875422          1  123568889887 99999998854   


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCC
Q 043239          214 HHMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       214 ~~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                      ..++..+.   +|+|+.+..+|.
T Consensus       205 ~P~~~~~~---l~~g~hV~~iGs  224 (326)
T PRK06046        205 KPVVKAEW---IKEGTHINAIGA  224 (326)
T ss_pred             CcEecHHH---cCCCCEEEecCC
Confidence            46776654   589999888873

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.53  E-value=0.00035  Score=64.63  Aligned_cols=82  Identities=15%  Similarity=0.180  Sum_probs=66.3

Q ss_pred             CEEEEEcCChHHHHHHHHhcc-CCC-EEEEECCCCCCCC----------C--cccccCHHHhhcCCCEEEEeccCChhhh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVP-FGC-SIAYTSRKKKPGV----------S--YPFYANVSGLAADSDVLIVCCALTEETH  214 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~-~g~-~V~~~~r~~~~~~----------~--~~~~~~l~e~l~~aDiV~~~lp~~~~t~  214 (286)
                      ++++|||.|..+...++.+.. ++. +|.+|+|+++...          +  +....|.+++++.||+|+.+.|.+   .
T Consensus       131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~---~  207 (330)
T COG2423         131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPST---E  207 (330)
T ss_pred             cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCC---C
Confidence            489999999999999998875 455 7999999987542          1  245679999999999999998865   3


Q ss_pred             hcccHHHHhcCCCCcEEEEcCC
Q 043239          215 HMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                      .++..+.   +|||..|..+|.
T Consensus       208 Pil~~~~---l~~G~hI~aiGa  226 (330)
T COG2423         208 PVLKAEW---LKPGTHINAIGA  226 (330)
T ss_pred             CeecHhh---cCCCcEEEecCC
Confidence            7777766   569999998884

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=97.51  E-value=0.00025  Score=72.53  Aligned_cols=113  Identities=14%  Similarity=0.130  Sum_probs=85.3

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------------C-------------cccccCHHHhhcC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------S-------------YPFYANVSGLAAD  199 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~-------------~~~~~~l~e~l~~  199 (286)
                      ++|+|||.|.||..+|..+...|++|+.+|++.+...                +             .....+++ .+++
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  414 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN  414 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            5799999999999999999999999999998875421                0             11123453 5799


Q ss_pred             CCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239          200 SDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS  265 (286)
Q Consensus       200 aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e  265 (286)
                      ||+|+=++|...+.+.-+-++.-+.++++++|..  .-+-++-..|...+.. .=+.+++-.|.+.
T Consensus       415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilas--NTSsl~i~~la~~~~~-p~r~ig~Hff~P~  477 (737)
T TIGR02441       415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIAS--NTSALPIKDIAAVSSR-PEKVIGMHYFSPV  477 (737)
T ss_pred             CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEE--cCCCCCHHHHHhhcCC-ccceEEEeccCCc
Confidence            9999999998888887777777788899988753  3444667777777754 3456778888654

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.50  E-value=0.00031  Score=71.64  Aligned_cols=113  Identities=12%  Similarity=0.070  Sum_probs=84.4

Q ss_pred             CEEEEEcCChHHHHHHHHhc-cCCCEEEEECCCCCCCC----------------C-------------cccccCHHHhhc
Q 043239          149 KRVGIVGLGSIGSEVAKRLV-PFGCSIAYTSRKKKPGV----------------S-------------YPFYANVSGLAA  198 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~-~~g~~V~~~~r~~~~~~----------------~-------------~~~~~~l~e~l~  198 (286)
                      ++|+|||.|.||..+|..+. ..|++|+.+|++.+...                +             .....++ +.++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  388 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK  388 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence            67999999999999999988 78999999998765311                0             0112344 4679


Q ss_pred             CCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239          199 DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS  265 (286)
Q Consensus       199 ~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e  265 (286)
                      +||+|+=++|...+.+.-+-++.-+.++|+++|...  .+-++-..|.+.+.. .=+.+++-.|.+.
T Consensus       389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasn--TS~l~i~~la~~~~~-p~r~ig~Hff~P~  452 (708)
T PRK11154        389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASN--TSSLPIGQIAAAAAR-PEQVIGLHYFSPV  452 (708)
T ss_pred             cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEEC--CCCCCHHHHHHhcCc-ccceEEEecCCcc
Confidence            999999999988887777777777788999987643  445667777777743 3356778877654

>PRK06199 ornithine cyclodeaminase; Validated

Probab=97.50  E-value=0.00021  Score=67.59  Aligned_cols=87  Identities=16%  Similarity=0.288  Sum_probs=65.2

Q ss_pred             CCEEEEEcCChHHHHHHHHhcc-C-CC-EEEEECCCCCCCC-----------C---cccccCHHHhhcCCCEEEEeccCC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVP-F-GC-SIAYTSRKKKPGV-----------S---YPFYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~-~-g~-~V~~~~r~~~~~~-----------~---~~~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      -++++|||.|..++..++.+.. + .. +|.+|+|+.++..           +   +..+.+.++++++||+|+.|.+.+
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~  234 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE  234 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence            3589999999999999998876 3 24 7999999876421           1   223578999999999999998754


Q ss_pred             h---hhhhcccHHHHhcCCCCcEEEEcCCC
Q 043239          211 E---ETHHMINKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       211 ~---~t~~~i~~~~l~~mk~g~ilvn~srg  237 (286)
                      +   ++..++..+.   +|+|+.++.++.-
T Consensus       235 ~~~~s~~Pv~~~~~---lkpG~hv~~ig~~  261 (379)
T PRK06199        235 TGDPSTYPYVKREW---VKPGAFLLMPAAC  261 (379)
T ss_pred             CCCCCcCcEecHHH---cCCCcEEecCCcc
Confidence            3   3447776654   5799887766553

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.47  E-value=0.0002  Score=64.28  Aligned_cols=112  Identities=16%  Similarity=0.207  Sum_probs=74.6

Q ss_pred             EEEEcC-ChHHHHHHHHhccCC----CEEEEECCCCCCCCC----------c------ccccCHHHhhcCCCEEEEeccC
Q 043239          151 VGIVGL-GSIGSEVAKRLVPFG----CSIAYTSRKKKPGVS----------Y------PFYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       151 vgIiG~-G~iG~~~A~~l~~~g----~~V~~~~r~~~~~~~----------~------~~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      |+|||. |.+|..+|..+...|    .+|..+|...+....          .      ....++.+.+++||+|+++.-.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            589999 999999999998777    689999987754321          0      1124567889999999996421


Q ss_pred             Ch-----------hhhhcccHH---HHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCeeEEE-eeccC
Q 043239          210 TE-----------ETHHMINKD---VMTALGKEGVIINVGRGALIDEKELVHF--LVRGSLVELV-LMCLR  263 (286)
Q Consensus       210 ~~-----------~t~~~i~~~---~l~~mk~g~ilvn~srg~~vd~~al~~a--l~~~~i~ga~-lDv~~  263 (286)
                      ..           .+..++ ++   .+....|.+++++.+..-=+-...+.+.  +...++.|.+ +|..+
T Consensus        81 ~~~~g~~r~~~~~~n~~i~-~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~r  150 (263)
T cd00650          81 GRKPGMGRLDLLKRNVPIV-KEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDPIR  150 (263)
T ss_pred             CCCcCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchHHH
Confidence            00           011111 12   2333458899999965444445555555  5677888998 88765

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.47  E-value=0.00042  Score=54.61  Aligned_cols=85  Identities=14%  Similarity=0.182  Sum_probs=53.4

Q ss_pred             EEEEEc-CChHHHHHHHHhccC-CCEEEEE-CCCCCCCC------C-cc-c-ccCHH-Hhh--cCCCEEEEeccCChhhh
Q 043239          150 RVGIVG-LGSIGSEVAKRLVPF-GCSIAYT-SRKKKPGV------S-YP-F-YANVS-GLA--ADSDVLIVCCALTEETH  214 (286)
Q Consensus       150 ~vgIiG-~G~iG~~~A~~l~~~-g~~V~~~-~r~~~~~~------~-~~-~-~~~l~-e~l--~~aDiV~~~lp~~~~t~  214 (286)
                      +++|+| .|.+|..+++.+... ++++... +++.+...      + .. . ..+.+ +.+  .++|+|++|+|......
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~   80 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE   80 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence            589999 599999999999875 7777654 43321111      0 10 0 11111 122  48999999999653333


Q ss_pred             hcccHHHHhcCCCCcEEEEcCC
Q 043239          215 HMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                       .+. .....+++|.++||+|.
T Consensus        81 -~~~-~~~~~~~~g~~viD~s~  100 (122)
T smart00859       81 -IAP-LLPKAAEAGVKVIDLSS  100 (122)
T ss_pred             -HHH-HHHhhhcCCCEEEECCc
Confidence             222 23455789999999973

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=97.46  E-value=0.00046  Score=70.43  Aligned_cols=113  Identities=12%  Similarity=0.114  Sum_probs=83.0

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------------C-------------cccccCHHHhhcC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------S-------------YPFYANVSGLAAD  199 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~-------------~~~~~~l~e~l~~  199 (286)
                      ++|+|||.|.||..+|..+...|++|+.+|++.+...                +             .....++ +.+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN  392 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            5799999999999999999999999999998765321                0             1112344 45799


Q ss_pred             CCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239          200 SDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS  265 (286)
Q Consensus       200 aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e  265 (286)
                      ||+|+=++|..-+.+.-+-++.-+.++++++|-..  -+-++-..|...+.. .=+..++=.|.+.
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasn--TS~l~i~~ia~~~~~-p~r~ig~Hff~P~  455 (714)
T TIGR02437       393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASN--TSTISISLLAKALKR-PENFCGMHFFNPV  455 (714)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEEC--CCCCCHHHHHhhcCC-cccEEEEecCCCc
Confidence            99999999988887777777777788999887543  344666777777643 3445566666544

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.46  E-value=0.00027  Score=65.54  Aligned_cols=82  Identities=12%  Similarity=0.167  Sum_probs=61.0

Q ss_pred             CCEEEEEcCChHHHHHHHHhcc-CCC-EEEEECCCCCCCC----------Cc--ccccCHHHhhcCCCEEEEeccCChhh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVP-FGC-SIAYTSRKKKPGV----------SY--PFYANVSGLAADSDVLIVCCALTEET  213 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~-~g~-~V~~~~r~~~~~~----------~~--~~~~~l~e~l~~aDiV~~~lp~~~~t  213 (286)
                      .++++|||.|.+|+..+..+.. .+. +|.+|+|+.++..          +.  ....++++++.+||+|+++.|..   
T Consensus       132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~---  208 (330)
T PRK08291        132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE---  208 (330)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC---
Confidence            4699999999999998888874 554 7999999876432          11  23578899999999999998753   


Q ss_pred             hhcccHHHHhcCCCCcEEEEcC
Q 043239          214 HHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       214 ~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      ..++..+.   +++|+.+..++
T Consensus       209 ~p~i~~~~---l~~g~~v~~vg  227 (330)
T PRK08291        209 EPILKAEW---LHPGLHVTAMG  227 (330)
T ss_pred             CcEecHHH---cCCCceEEeeC
Confidence            45665544   57887666643

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=97.46  E-value=0.0004  Score=64.35  Aligned_cols=82  Identities=16%  Similarity=0.191  Sum_probs=59.4

Q ss_pred             EEEEcCChHHHHHHHHhcc-CCCEEEEE-CCCCCCC------CC------------------cccccCHHHhhcCCCEEE
Q 043239          151 VGIVGLGSIGSEVAKRLVP-FGCSIAYT-SRKKKPG------VS------------------YPFYANVSGLAADSDVLI  204 (286)
Q Consensus       151 vgIiG~G~iG~~~A~~l~~-~g~~V~~~-~r~~~~~------~~------------------~~~~~~l~e~l~~aDiV~  204 (286)
                      |||+|+|.||+.+++.+.. -+++|++. |.+++..      .+                  .....++++++.++|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            6999999999999999764 35787654 4333210      01                  111346889999999999


Q ss_pred             EeccCChhhhhcccHHHHhcCCCCcEEEEcC
Q 043239          205 VCCALTEETHHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       205 ~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      .|.|.   +.+..+++.+..|+.+.+|+..-
T Consensus        81 e~Tp~---~~~~~na~~~~~~GakaVl~~~p  108 (333)
T TIGR01546        81 DATPG---GIGAKNKPLYEKAGVKAIFQGGE  108 (333)
T ss_pred             ECCCC---CCChhhHHHHHhCCcCEEEECCC
Confidence            98654   56678888999999999888653

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=97.45  E-value=0.00048  Score=70.13  Aligned_cols=113  Identities=14%  Similarity=0.102  Sum_probs=82.6

Q ss_pred             CEEEEEcCChHHHHHHHHhc-cCCCEEEEECCCCCCCC----------------C-------------cccccCHHHhhc
Q 043239          149 KRVGIVGLGSIGSEVAKRLV-PFGCSIAYTSRKKKPGV----------------S-------------YPFYANVSGLAA  198 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~-~~g~~V~~~~r~~~~~~----------------~-------------~~~~~~l~e~l~  198 (286)
                      ++|+|||.|.||..+|..+. ..|++|+.+|.+++...                +             .....++ +.++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  383 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK  383 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence            57999999999999999987 57999999998864211                0             0112345 4679


Q ss_pred             CCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239          199 DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS  265 (286)
Q Consensus       199 ~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e  265 (286)
                      +||+|+=++|...+.+.-+-++.-+.++++++|..-  -+-+.-..|.+.+. ..=+.+++-.|.+.
T Consensus       384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasn--TS~l~i~~la~~~~-~p~r~~g~HffnP~  447 (699)
T TIGR02440       384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASN--TSSLPIGQIAAAAS-RPENVIGLHYFSPV  447 (699)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeC--CCCCCHHHHHHhcC-CcccEEEEecCCcc
Confidence            999999999988887777777777778999877633  33456667777764 33355677777554

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.43  E-value=0.00037  Score=60.48  Aligned_cols=91  Identities=24%  Similarity=0.288  Sum_probs=62.7

Q ss_pred             CEEEEEcCChHHHHHHHHhccC--CCE-EEEECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF--GCS-IAYTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~--g~~-V~~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      ++|||||+|.||+.+.+.+..-  .++ +.+||++.++..      ......+++|++++.|+++=|.. .+..+.    
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS-~~Av~e----   75 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS-PEAVRE----   75 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC-HHHHHH----
Confidence            4799999999999999999853  354 678999887654      22334789999999999988764 223332    


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHH
Q 043239          220 DVMTALGKEGVIINVGRGALIDEKE  244 (286)
Q Consensus       220 ~~l~~mk~g~ilvn~srg~~vd~~a  244 (286)
                      -..+.|+.|.=+|=+|-|.+.|+.-
T Consensus        76 ~~~~~L~~g~d~iV~SVGALad~~l  100 (255)
T COG1712          76 YVPKILKAGIDVIVMSVGALADEGL  100 (255)
T ss_pred             HhHHHHhcCCCEEEEechhccChHH
Confidence            2334455665455556688776543

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.39  E-value=0.0021  Score=57.40  Aligned_cols=105  Identities=20%  Similarity=0.308  Sum_probs=72.7

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCCEEE-EECCCCC----------------------CC--CCc------ccccC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA-YTSRKKK----------------------PG--VSY------PFYAN  192 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~-~~~r~~~----------------------~~--~~~------~~~~~  192 (286)
                      .++.|++|.|-|+|++|+.+|+.|...|++|+ +.|.+..                      ..  ..+      ....+
T Consensus        34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~  113 (254)
T cd05313          34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFE  113 (254)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeC
Confidence            46899999999999999999999999999988 4442110                      00  000      01113


Q ss_pred             HHHhh-cCCCEEEEeccCChhhhhcccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          193 VSGLA-ADSDVLIVCCALTEETHHMINKDVMTALG--KEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       193 l~e~l-~~aDiV~~~lp~~~~t~~~i~~~~l~~mk--~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      .++++ .+|||++-|.     +.+.|+.+..+.++  .=.+++-.+.+.+.+  +-.+.|.++.|.
T Consensus       114 ~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~  172 (254)
T cd05313         114 GKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL  172 (254)
T ss_pred             CcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence            33433 4699888773     67889999888884  334777888888755  455788888775

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.38  E-value=0.0012  Score=52.35  Aligned_cols=99  Identities=20%  Similarity=0.264  Sum_probs=59.7

Q ss_pred             CEEEEEcC-ChHHHHHHHHhcc-CCCEEE-EECCCCCCCC-------------CcccccCHHHhhcCCCEEEEeccCChh
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVP-FGCSIA-YTSRKKKPGV-------------SYPFYANVSGLAADSDVLIVCCALTEE  212 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~-~g~~V~-~~~r~~~~~~-------------~~~~~~~l~e~l~~aDiV~~~lp~~~~  212 (286)
                      ++|+|+|+ |+||+.+++.+.. -++++. +++++.+...             +.....++++++.++|+++-..  +++
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~   78 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPD   78 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChH
Confidence            48999999 9999999999987 678864 5677662211             2334578999999999987764  233


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          213 THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       213 t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      ...-.-+..+   +.|.-+|-..+|---++.+.++.+.+.
T Consensus        79 ~~~~~~~~~~---~~g~~~ViGTTG~~~~~~~~l~~~a~~  115 (124)
T PF01113_consen   79 AVYDNLEYAL---KHGVPLVIGTTGFSDEQIDELEELAKK  115 (124)
T ss_dssp             HHHHHHHHHH---HHT-EEEEE-SSSHHHHHHHHHHHTTT
T ss_pred             HhHHHHHHHH---hCCCCEEEECCCCCHHHHHHHHHHhcc
Confidence            2211112222   345556655566544444555555444

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.37  E-value=0.0019  Score=56.40  Aligned_cols=104  Identities=20%  Similarity=0.289  Sum_probs=69.5

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCCEEE-EECCCC----------CCC-----C-Ccccc-----cCHHHhh-cCC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA-YTSRKK----------KPG-----V-SYPFY-----ANVSGLA-ADS  200 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~-~~~r~~----------~~~-----~-~~~~~-----~~l~e~l-~~a  200 (286)
                      .++.|+++.|.|+|++|+.+|+.|...|.+|+ +.|.+.          +..     . ....+     .+-++++ .+|
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   98 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV   98 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence            45889999999999999999999999999765 556554          110     0 11111     1112332 379


Q ss_pred             CEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          201 DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       201 DiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      |+++-|.+     .++|+.+....++ -.+++-.+.+.+.+  .-.+.|+++++.
T Consensus        99 DVlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~  145 (217)
T cd05211          99 DIFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGIV  145 (217)
T ss_pred             cEEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence            99988865     4478888888776 34566677777655  456677776654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.37  E-value=0.0047  Score=54.31  Aligned_cols=104  Identities=23%  Similarity=0.313  Sum_probs=70.8

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC---C--------------C----c--ccccCHHHhh-cC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG---V--------------S----Y--PFYANVSGLA-AD  199 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~---~--------------~----~--~~~~~l~e~l-~~  199 (286)
                      .++.+++++|.|+|.+|+.+|+.|..+|++|++...+....   .              +    +  ....+.++++ .+
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~  106 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELD  106 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeec
Confidence            45889999999999999999999999999998543331100   0              0    0  0011223332 36


Q ss_pred             CCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          200 SDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       200 aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      ||+++-|.+     .+.++.+...+++ =.+++-.+.+.+-  ....+.|+++.+.
T Consensus       107 ~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~t--~~a~~~L~~rGi~  154 (227)
T cd01076         107 CDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPTT--PEADEILHERGVL  154 (227)
T ss_pred             ccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCCC--HHHHHHHHHCCCE
Confidence            898887764     5578888888887 3456777777764  5566888888775

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.36  E-value=0.00076  Score=63.24  Aligned_cols=105  Identities=13%  Similarity=0.219  Sum_probs=79.0

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------------C-------------cccccCHHHhhcCCCEE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------------S-------------YPFYANVSGLAADSDVL  203 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------------~-------------~~~~~~l~e~l~~aDiV  203 (286)
                      |+|.|+|.|-+|...+..|..+|++|+.+|..+++..            +             .....+.++.++++|++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~   80 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV   80 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence            5899999999999999999999999999997765311            0             12235778899999999


Q ss_pred             EEeccCChhhhhccc--------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 043239          204 IVCCALTEETHHMIN--------KDVMTALGKEGVIINVGRGALIDEKELVHFLVRGS  253 (286)
Q Consensus       204 ~~~lp~~~~t~~~i~--------~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~  253 (286)
                      ++++|......+-++        ++..+.++..+++|+=|+-.+=..+.+.+-+....
T Consensus        81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~  138 (414)
T COG1004          81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREEN  138 (414)
T ss_pred             EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhc
Confidence            999985444344333        44566777779999999888777777766555443

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=97.36  E-value=0.00034  Score=62.64  Aligned_cols=86  Identities=12%  Similarity=0.138  Sum_probs=54.1

Q ss_pred             HHHHhccCC--CEEEEECCCCCCCC-----Ccc-cccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEc
Q 043239          163 VAKRLVPFG--CSIAYTSRKKKPGV-----SYP-FYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINV  234 (286)
Q Consensus       163 ~A~~l~~~g--~~V~~~~r~~~~~~-----~~~-~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~  234 (286)
                      +|+.|+..|  .+|+++|+++....     ++. ...+-.+.++++|+|++|+|.. .+..++ ++..+.+++|++++|+
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~-~~~~~l-~~~~~~~~~~~iv~Dv   78 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVS-AIEDVL-EEIAPYLKPGAIVTDV   78 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HH-HHHHHH-HHHHCGS-TTSEEEE-
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHH-HHHHHH-HHhhhhcCCCcEEEEe
Confidence            577788777  68999999876432     222 1222257889999999999943 444444 5677789999999999


Q ss_pred             CCCcccCHHHHHHHHH
Q 043239          235 GRGALIDEKELVHFLV  250 (286)
Q Consensus       235 srg~~vd~~al~~al~  250 (286)
                      +.-..--.+++.+.+.
T Consensus        79 ~SvK~~~~~~~~~~~~   94 (258)
T PF02153_consen   79 GSVKAPIVEAMERLLP   94 (258)
T ss_dssp             -S-CHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHhcC
Confidence            8776555556666555

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=97.35  E-value=0.0017  Score=59.94  Aligned_cols=103  Identities=17%  Similarity=0.212  Sum_probs=66.0

Q ss_pred             CEEEEEcCChHHHHHHHHhccC-CCEEE-EECCCC-CCC-C--CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF-GCSIA-YTSRKK-KPG-V--SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM  222 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~-g~~V~-~~~r~~-~~~-~--~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l  222 (286)
                      .+|||+|+|+||+.+++.+... ++++. +++++. +.. .  +.....+.++++.+.|+|++|.|.....     ....
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th~-----~~~~   78 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATDI-----PEQA   78 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccCH-----HHHH
Confidence            5999999999999999999765 78876 578875 221 1  2223356777888999999999854321     2334


Q ss_pred             hcCCCCcEEEEcCCCc--ccCHHH-HHHHHHh-CCeeE
Q 043239          223 TALGKEGVIINVGRGA--LIDEKE-LVHFLVR-GSLVE  256 (286)
Q Consensus       223 ~~mk~g~ilvn~srg~--~vd~~a-l~~al~~-~~i~g  256 (286)
                      ..|+.|--+|+..--.  +-+..+ +.++.++ |+...
T Consensus        79 ~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsv  116 (324)
T TIGR01921        79 PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSV  116 (324)
T ss_pred             HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence            4456666677774321  223334 4445553 56553

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.34  E-value=0.00039  Score=64.89  Aligned_cols=85  Identities=14%  Similarity=0.178  Sum_probs=62.4

Q ss_pred             CCEEEEEcCChHHHHHHHHhcc-CCC-EEEEECCCCCCCC---------C--cccccCHHHhhcCCCEEEEeccCChhhh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVP-FGC-SIAYTSRKKKPGV---------S--YPFYANVSGLAADSDVLIVCCALTEETH  214 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~-~g~-~V~~~~r~~~~~~---------~--~~~~~~l~e~l~~aDiV~~~lp~~~~t~  214 (286)
                      -++++|||.|..+...++.+.. +.. +|.+|+|+.++..         +  +....++++++++||+|+++.|.+ +..
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~  207 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNA  207 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCC
Confidence            3589999999999988876653 344 7999999976532         1  223578999999999999998632 223


Q ss_pred             hcccHHHHhcCCCCcEEEEcCC
Q 043239          215 HMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                      .++..+.   +|||+.+.-+|.
T Consensus       208 Pvl~~~~---lkpG~hV~aIGs  226 (346)
T PRK07589        208 TILTDDM---VEPGMHINAVGG  226 (346)
T ss_pred             ceecHHH---cCCCcEEEecCC
Confidence            5666554   589998777663

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.31  E-value=0.00044  Score=59.72  Aligned_cols=70  Identities=24%  Similarity=0.296  Sum_probs=50.7

Q ss_pred             CCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------C-ccc-ccCH-HHhhcCCCEEEEeccCC
Q 043239          141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------S-YPF-YANV-SGLAADSDVLIVCCALT  210 (286)
Q Consensus       141 ~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~-~~~-~~~l-~e~l~~aDiV~~~lp~~  210 (286)
                      +..-++.|++|.|||.|.+|...++.|...|++|+++++...+..      + ... ...+ .+.+.++|+|+.++...
T Consensus         3 Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~   81 (202)
T PRK06718          3 PLMIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDP   81 (202)
T ss_pred             ceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCH
Confidence            455679999999999999999999999999999999987643321      1 110 1111 23577899888876643

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.31  E-value=0.00031  Score=60.84  Aligned_cols=68  Identities=16%  Similarity=0.272  Sum_probs=49.6

Q ss_pred             CCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-------Cccc---ccCHHHhhcCCCEEEEeccC
Q 043239          141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------SYPF---YANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       141 ~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------~~~~---~~~l~e~l~~aDiV~~~lp~  209 (286)
                      +..-++.|++|.|||.|.+|..-++.|...|++|+++++...+..       ....   ... .+.+.++|+|+.+...
T Consensus         2 P~~l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~-~~dl~~~~lVi~at~d   79 (205)
T TIGR01470         2 PVFANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFD-ADILEGAFLVIAATDD   79 (205)
T ss_pred             CeEEEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCC-HHHhCCcEEEEECCCC
Confidence            344568999999999999999999999999999999988654321       1110   112 3456788988877543

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.30  E-value=0.00053  Score=62.26  Aligned_cols=100  Identities=15%  Similarity=0.191  Sum_probs=66.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCCC----------cccc---cCHHHhhcCCCEEEEeccCCh
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVS----------YPFY---ANVSGLAADSDVLIVCCALTE  211 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~~----------~~~~---~~l~e~l~~aDiV~~~lp~~~  211 (286)
                      +.++++.|||.|.+|++++..|...|+ +|++++|+.++...          ....   .++.+.+.++|+|+.++|...
T Consensus       123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~  202 (282)
T TIGR01809       123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADV  202 (282)
T ss_pred             cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCC
Confidence            678899999999999999999999998 69999998765321          0111   223355688999999998653


Q ss_pred             hhhhcccHHHHh---------cCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239          212 ETHHMINKDVMT---------ALGKEGVIINVGRGALIDEKELVHFLVR  251 (286)
Q Consensus       212 ~t~~~i~~~~l~---------~mk~g~ilvn~srg~~vd~~al~~al~~  251 (286)
                      .    ++...+.         .++++.+++|+--.. ..+ .|+++.++
T Consensus       203 ~----~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P-~~T-~ll~~A~~  245 (282)
T TIGR01809       203 P----ADYVDLFATVPFLLLKRKSSEGIFLDAAYDP-WPT-PLVAIVSA  245 (282)
T ss_pred             C----CCHHHhhhhhhhhccccCCCCcEEEEEeeCC-CCC-HHHHHHHH
Confidence            2    2222221         234667888886433 233 34444444

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PLN02477 glutamate dehydrogenase

Probab=97.29  E-value=0.0019  Score=61.56  Aligned_cols=105  Identities=22%  Similarity=0.301  Sum_probs=73.4

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCCEEE-EECCCCCC--CC------------------Ccc--cccCHHHh-hc
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA-YTSRKKKP--GV------------------SYP--FYANVSGL-AA  198 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~-~~~r~~~~--~~------------------~~~--~~~~l~e~-l~  198 (286)
                      +.+++|++|+|.|+|++|+.+|+.|...|.+|+ +.|.+..-  ..                  ++.  ...+.+++ ..
T Consensus       201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~  280 (410)
T PLN02477        201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE  280 (410)
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec
Confidence            457899999999999999999999999999988 44544110  00                  000  01122333 34


Q ss_pred             CCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          199 DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       199 ~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      .|||++-|.     ..+.|+++....++- .+++-.+.+.+ .. .-.+.|+++.|.
T Consensus       281 ~~DvliP~A-----l~~~I~~~na~~i~a-k~I~egAN~p~-t~-ea~~~L~~rGI~  329 (410)
T PLN02477        281 PCDVLIPAA-----LGGVINKENAADVKA-KFIVEAANHPT-DP-EADEILRKKGVV  329 (410)
T ss_pred             cccEEeecc-----ccccCCHhHHHHcCC-cEEEeCCCCCC-CH-HHHHHHHHCCcE
Confidence            799887764     567899998888853 57788888887 33 345888888775

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.29  E-value=0.0014  Score=58.57  Aligned_cols=100  Identities=25%  Similarity=0.369  Sum_probs=65.5

Q ss_pred             CEEEEEcCChHHHHHHHHhccC---CCEEE-EECCCCCCCC----CcccccCHHHh-hcCCCEEEEeccCChhhhhcccH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF---GCSIA-YTSRKKKPGV----SYPFYANVSGL-AADSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~---g~~V~-~~~r~~~~~~----~~~~~~~l~e~-l~~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      ++|||||+|.||+.+++.+.+-   ++++. +++|..+...    ....+.+++++ ....|+|+=|.+  ++   .+.+
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~--~~---av~e   77 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAG--QQ---AIAE   77 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCC--HH---HHHH
Confidence            5899999999999999998753   35544 5666543221    23456789997 577999988865  22   1212


Q ss_pred             HHHhcCCCCcEEEEcCCCcccC---HHHHHHHHHhCC
Q 043239          220 DVMTALGKEGVIINVGRGALID---EKELVHFLVRGS  253 (286)
Q Consensus       220 ~~l~~mk~g~ilvn~srg~~vd---~~al~~al~~~~  253 (286)
                      -..+-++.|.-++=+|-|.+.|   .+.|.++.++++
T Consensus        78 ~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g  114 (267)
T PRK13301         78 HAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGG  114 (267)
T ss_pred             HHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCC
Confidence            2233345676677777888887   455556555544

>PRK06223 malate dehydrogenase; Reviewed

Probab=97.28  E-value=0.00098  Score=61.04  Aligned_cols=108  Identities=15%  Similarity=0.189  Sum_probs=67.1

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCCC---------------cc--cccCHHHhhcCCCEEEEecc--
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVS---------------YP--FYANVSGLAADSDVLIVCCA--  208 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~~---------------~~--~~~~l~e~l~~aDiV~~~lp--  208 (286)
                      ++|+|||.|.||..+|..+...|. +|..+|+..+...+               ..  ...+. +.+++||+|+++..  
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~p   81 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGVP   81 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCCC
Confidence            589999999999999999987665 89999986654320               00  11344 45799999999863  


Q ss_pred             CCh---------hhhhcccHHH---HhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCeeEEE
Q 043239          209 LTE---------ETHHMINKDV---MTALGKEGVIINVGRGALIDEKELVHF--LVRGSLVELV  258 (286)
Q Consensus       209 ~~~---------~t~~~i~~~~---l~~mk~g~ilvn~srg~~vd~~al~~a--l~~~~i~ga~  258 (286)
                      ..+         .+..++ ++.   +....+.+++|+++...-+....+.+.  +...++.|.+
T Consensus        82 ~~~~~~r~~~~~~n~~i~-~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~g  144 (307)
T PRK06223         82 RKPGMSRDDLLGINAKIM-KDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMA  144 (307)
T ss_pred             CCcCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeC
Confidence            211         111112 122   222246678888866655555555543  2235677664

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=97.26  E-value=0.0014  Score=58.91  Aligned_cols=102  Identities=20%  Similarity=0.266  Sum_probs=62.3

Q ss_pred             CEEEEEcCChHHHHHHHHhccC-CCEEE-EECCCCCCC--C-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF-GCSIA-YTSRKKKPG--V-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~-g~~V~-~~~r~~~~~--~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      ++|||||+|.||+.+++.+... ++++. ++++.....  .     +...+.+++++-.+.|+|+.|.|.. ...    +
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~-~~~----e   76 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHA-ALK----E   76 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHH-HHH----H
Confidence            4899999999999999999875 55653 333322211  0     2334577888745699999998743 222    2


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHhCCee
Q 043239          220 DVMTALGKEGVIINVGRGALIDE---KELVHFLVRGSLV  255 (286)
Q Consensus       220 ~~l~~mk~g~ilvn~srg~~vd~---~al~~al~~~~i~  255 (286)
                      -....++.|.-++-.+-+...|.   +.|.++.++++..
T Consensus        77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~  115 (265)
T PRK13303         77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR  115 (265)
T ss_pred             HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence            22333455554555555655443   4566666666544

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=97.24  E-value=0.0011  Score=61.28  Aligned_cols=111  Identities=18%  Similarity=0.189  Sum_probs=70.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-------------C----cccccCHHHhhcCCCEEEEec
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-------------S----YPFYANVSGLAADSDVLIVCC  207 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-------------~----~~~~~~l~e~l~~aDiV~~~l  207 (286)
                      +..++|+|||.|.||..+|..+...|. +|+.+|.+++...             +    .....+. +.+++||+|+++.
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta   82 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA   82 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence            455799999999999999999887785 8999998776321             0    1112455 5679999999975


Q ss_pred             cCCh----------------hhhhcccHHH---HhcCCCCcEEEEcCCCcccCHHHHHHHHH--hCCeeEEE
Q 043239          208 ALTE----------------ETHHMINKDV---MTALGKEGVIINVGRGALIDEKELVHFLV--RGSLVELV  258 (286)
Q Consensus       208 p~~~----------------~t~~~i~~~~---l~~mk~g~ilvn~srg~~vd~~al~~al~--~~~i~ga~  258 (286)
                      -...                .+..++ .+.   +....|.+++++++...-+....+.+...  ..++.|.+
T Consensus        83 g~~~~~~~~~~~~~r~~~l~~n~~i~-~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg  153 (321)
T PTZ00082         83 GLTKRPGKSDKEWNRDDLLPLNAKIM-DEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA  153 (321)
T ss_pred             CCCCCCCCCcCCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence            2211                111111 122   22235677999998655444555555432  34666666

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.23  E-value=0.00065  Score=53.59  Aligned_cols=83  Identities=20%  Similarity=0.314  Sum_probs=51.3

Q ss_pred             EEEEEc-CChHHHHHHHHhccC-CCEE-EEECCCCCCCC------C----cc--cc-cCHHHhhcCCCEEEEeccCChhh
Q 043239          150 RVGIVG-LGSIGSEVAKRLVPF-GCSI-AYTSRKKKPGV------S----YP--FY-ANVSGLAADSDVLIVCCALTEET  213 (286)
Q Consensus       150 ~vgIiG-~G~iG~~~A~~l~~~-g~~V-~~~~r~~~~~~------~----~~--~~-~~l~e~l~~aDiV~~~lp~~~~t  213 (286)
                      +|+|+| .|.+|+.+.++|... .+++ .+++++.+.-.      +    ..  .. ..-.+.+.++|+|++|+|... +
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~-~   79 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGA-S   79 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHH-H
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhH-H
Confidence            699999 999999999999974 3454 44555542211      0    00  01 112244599999999998432 2


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCC
Q 043239          214 HHMINKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       214 ~~~i~~~~l~~mk~g~ilvn~srg  237 (286)
                      ..+. ...   +++|..+||.|..
T Consensus        80 ~~~~-~~~---~~~g~~ViD~s~~   99 (121)
T PF01118_consen   80 KELA-PKL---LKAGIKVIDLSGD   99 (121)
T ss_dssp             HHHH-HHH---HHTTSEEEESSST
T ss_pred             HHHH-HHH---hhCCcEEEeCCHH
Confidence            2222 222   4789999999754

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.22  E-value=0.0031  Score=57.65  Aligned_cols=111  Identities=14%  Similarity=0.179  Sum_probs=77.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCC--CCCCcccccCHHHhhcCCCEEEEeccCChhh---h-------
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK--PGVSYPFYANVSGLAADSDVLIVCCALTEET---H-------  214 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~--~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t---~-------  214 (286)
                      .|++++|||-=.--..++++|.+.|++|.++.-+.+  ...+.....+.+++++++|+|+.-+|.+.+.   .       
T Consensus         1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~   80 (296)
T PRK08306          1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEK   80 (296)
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccC
Confidence            378999999999999999999999999886544322  2335555667788999999999988865332   1       


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCC
Q 043239          215 HMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRT  264 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~  264 (286)
                      --++.+.+++|++|.+++ ++.+..   . +-+.+.++++..  +|..+.
T Consensus        81 ~~~~~~~l~~l~~~~~v~-~G~~~~---~-~~~~~~~~gi~~--~~~~~~  123 (296)
T PRK08306         81 LVLTEELLELTPEHCTIF-SGIANP---Y-LKELAKETNRKL--VELFER  123 (296)
T ss_pred             CcchHHHHHhcCCCCEEE-EecCCH---H-HHHHHHHCCCeE--EEEecc
Confidence            113567899999998544 344332   2 335667777764  355543

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=97.14  E-value=0.00038  Score=54.25  Aligned_cols=102  Identities=24%  Similarity=0.359  Sum_probs=68.9

Q ss_pred             CEEEEEcCChHHHHHHHHhccC--CCEEE-EECCCCCCCC------CcccccCHHHhhc--CCCEEEEeccCChhhhhcc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF--GCSIA-YTSRKKKPGV------SYPFYANVSGLAA--DSDVLIVCCALTEETHHMI  217 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~--g~~V~-~~~r~~~~~~------~~~~~~~l~e~l~--~aDiV~~~lp~~~~t~~~i  217 (286)
                      .++||||+|.+|+...+.+...  ++++. +++++++...      +...+.|++++++  +.|+|+++.|......  +
T Consensus         1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~--~   78 (120)
T PF01408_consen    1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAE--I   78 (120)
T ss_dssp             EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHH--H
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHH--H
Confidence            3799999999999999888765  45664 6788765422      4446789999998  7999999998543222  2


Q ss_pred             cHHHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHhCCee
Q 043239          218 NKDVMTALGKE-GVIINVG-RGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       218 ~~~~l~~mk~g-~ilvn~s-rg~~vd~~al~~al~~~~i~  255 (286)
                      -...++   .| .+++.-- --++-+.+.|.++.++.+..
T Consensus        79 ~~~~l~---~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~  115 (120)
T PF01408_consen   79 AKKALE---AGKHVLVEKPLALTLEEAEELVEAAKEKGVK  115 (120)
T ss_dssp             HHHHHH---TTSEEEEESSSSSSHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHH---cCCEEEEEcCCcCCHHHHHHHHHHHHHhCCE
Confidence            233333   33 5666642 23556777777777765543

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.12  E-value=0.0011  Score=61.44  Aligned_cols=84  Identities=19%  Similarity=0.298  Sum_probs=57.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc------ccCHHHhhcCCCEEEEeccCChhhhh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF------YANVSGLAADSDVLIVCCALTEETHH  215 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~------~~~l~e~l~~aDiV~~~lp~~~~t~~  215 (286)
                      .|++|+|+|+|-+|....+.++++|++|++++++.++.+     +...      ...++++-+.+|+++.++| ....  
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~--  242 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATL--  242 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhH--
Confidence            489999999999999999999999999999999988642     2211      1122233333999999887 4332  


Q ss_pred             cccHHHHhcCCCCcEEEEcCC
Q 043239          216 MINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       216 ~i~~~~l~~mk~g~ilvn~sr  236 (286)
                         ...+..++++..++-++-
T Consensus       243 ---~~~l~~l~~~G~~v~vG~  260 (339)
T COG1064         243 ---EPSLKALRRGGTLVLVGL  260 (339)
T ss_pred             ---HHHHHHHhcCCEEEEECC
Confidence               234445555555555543

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.10  E-value=0.0014  Score=59.63  Aligned_cols=105  Identities=16%  Similarity=0.179  Sum_probs=67.6

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCE-EEEECCCC---CCCC-----------C--cc--cc---cCHHHhhcCCCE
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKK---KPGV-----------S--YP--FY---ANVSGLAADSDV  202 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~-V~~~~r~~---~~~~-----------~--~~--~~---~~l~e~l~~aDi  202 (286)
                      .+.++++.|+|.|.+|++++..|...|++ |.+++|+.   ++..           .  ..  ..   .++++.++.+|+
T Consensus       123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di  202 (289)
T PRK12548        123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI  202 (289)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence            36788999999999999999999999995 99999985   2210           0  00  01   123445678899


Q ss_pred             EEEeccCChh--hhh-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          203 LIVCCALTEE--THH-MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       203 V~~~lp~~~~--t~~-~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      |+.++|..-.  ... .+.  ....++++.+++|+--.. .++.=|..|-+.|
T Consensus       203 lINaTp~Gm~~~~~~~~~~--~~~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G  252 (289)
T PRK12548        203 LVNATLVGMKPNDGETNIK--DTSVFRKDLVVADTVYNP-KKTKLLEDAEAAG  252 (289)
T ss_pred             EEEeCCCCCCCCCCCCCCC--cHHhcCCCCEEEEecCCC-CCCHHHHHHHHCC
Confidence            9999986521  111 110  124467888999997554 3444444444433

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=97.08  E-value=0.00048  Score=56.08  Aligned_cols=105  Identities=23%  Similarity=0.299  Sum_probs=70.6

Q ss_pred             EEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc--------------cccCHHHhhcCCCEEEEeccCCh
Q 043239          151 VGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP--------------FYANVSGLAADSDVLIVCCALTE  211 (286)
Q Consensus       151 vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~--------------~~~~l~e~l~~aDiV~~~lp~~~  211 (286)
                      |+|+|.|.||..+|.+|+..|++|..+.|+. ...     +..              ...+..+....+|+|++|+.. .
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa-~   78 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA-Y   78 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG-G
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc-c
Confidence            6899999999999999999999999998877 211     110              011122456789999999874 3


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEe
Q 043239          212 ETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVL  259 (286)
Q Consensus       212 ~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~l  259 (286)
                      ++...+. .....+.+++.++-+-.| +-.++.+.+.+...++.++..
T Consensus        79 ~~~~~l~-~l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~~  124 (151)
T PF02558_consen   79 QLEQALQ-SLKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGVT  124 (151)
T ss_dssp             GHHHHHH-HHCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEEE
T ss_pred             chHHHHH-HHhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEEE
Confidence            4454543 366667777788877666 445666666765556654443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=97.08  E-value=0.0051  Score=55.07  Aligned_cols=60  Identities=23%  Similarity=0.366  Sum_probs=46.0

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccC-CCEEE-EECCCCCCCC-----CcccccCHHHhhcCCCEEEEecc
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPF-GCSIA-YTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~-g~~V~-~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp  208 (286)
                      ++|+|+|+ |.||+.+++.+... ++++. ++++..+...     +...+.+++++++.+|+|+.+.|
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~   69 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT   69 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence            58999998 99999999998864 67865 5777654332     23346789999989999997765

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=97.05  E-value=0.00065  Score=65.19  Aligned_cols=102  Identities=12%  Similarity=0.079  Sum_probs=67.7

Q ss_pred             CEEEEEcCChHHHHHHH---Hh---ccCCCEEEEECCCCCCCC-----------------CcccccCHHHhhcCCCEEEE
Q 043239          149 KRVGIVGLGSIGSEVAK---RL---VPFGCSIAYTSRKKKPGV-----------------SYPFYANVSGLAADSDVLIV  205 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~---~l---~~~g~~V~~~~r~~~~~~-----------------~~~~~~~l~e~l~~aDiV~~  205 (286)
                      .+|+|||.|.+|.+.+-   .+   ...|.+|..||++++...                 ......++++.+++||+|+.
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~   80 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN   80 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence            37999999999998554   22   344679999999875421                 11234678899999999999


Q ss_pred             eccCChh---hh--------h-------------c--------ccHHHHhcC---CCCcEEEEcCCCcccCHHHHHHHHH
Q 043239          206 CCALTEE---TH--------H-------------M--------INKDVMTAL---GKEGVIINVGRGALIDEKELVHFLV  250 (286)
Q Consensus       206 ~lp~~~~---t~--------~-------------~--------i~~~~l~~m---k~g~ilvn~srg~~vd~~al~~al~  250 (286)
                      ++|....   .+        +             +        +-.+..+.+   .|.++++|.+...-+-+.++.+...
T Consensus        81 ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~~k~~~  160 (423)
T cd05297          81 TIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNRYTP  160 (423)
T ss_pred             eeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHHHHhCC
Confidence            9983110   00        0             0        011233333   3689999998887777777776654

linked to 3D####ucture

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.04  E-value=0.0016  Score=56.14  Aligned_cols=80  Identities=23%  Similarity=0.246  Sum_probs=55.8

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC------------------------------Cc--c--
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV------------------------------SY--P--  188 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~------------------------------~~--~--  188 (286)
                      ..|.+++|.|+|+|.+|..+|+.|...|. +++.+|+..-...                              ..  .  
T Consensus        17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~   96 (202)
T TIGR02356        17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTAL   96 (202)
T ss_pred             HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            46899999999999999999999999998 7888887521100                              00  0  


Q ss_pred             --c--ccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhc
Q 043239          189 --F--YANVSGLAADSDVLIVCCALTEETHHMINKDVMTA  224 (286)
Q Consensus       189 --~--~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~  224 (286)
                        .  ..++++.++++|+|+.|+ ++.+++..+++....+
T Consensus        97 ~~~i~~~~~~~~~~~~D~Vi~~~-d~~~~r~~l~~~~~~~  135 (202)
T TIGR02356        97 KERVTAENLELLINNVDLVLDCT-DNFATRYLINDACVAL  135 (202)
T ss_pred             hhcCCHHHHHHHHhCCCEEEECC-CCHHHHHHHHHHHHHc
Confidence              0  123456778888887776 4556676666554443

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=97.00  E-value=0.0045  Score=59.58  Aligned_cols=138  Identities=19%  Similarity=0.237  Sum_probs=84.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC---------CCccc--ccCHHHhhcCCCEEEEeccCChhhh
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG---------VSYPF--YANVSGLAADSDVLIVCCALTEETH  214 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~---------~~~~~--~~~l~e~l~~aDiV~~~lp~~~~t~  214 (286)
                      ..+++|.|+|+|.-|.++|+.|++.|++|+++|.++...         .+...  -.-..+.+.++|+|+.. |.-+-+.
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S-PGi~~~~   83 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS-PGIPPTH   83 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC-CCCCCCC
Confidence            449999999999999999999999999999999666551         11111  11112567889999886 3222222


Q ss_pred             hc-----------ccH-HHHhcC-CCCcE-EEEcCCCcccCHHHHHHHHHh--------CCeeEEEeeccCCCCC-----
Q 043239          215 HM-----------INK-DVMTAL-GKEGV-IINVGRGALIDEKELVHFLVR--------GSLVELVLMCLRTSLM-----  267 (286)
Q Consensus       215 ~~-----------i~~-~~l~~m-k~g~i-lvn~srg~~vd~~al~~al~~--------~~i~ga~lDv~~~e~~-----  267 (286)
                      .+           +.+ +.+-+. .+..+ -|-=+.|....+.-+..-|++        |.|...++++.+.+..     
T Consensus        84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~~~~d~~V  163 (448)
T COG0771          84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQAEPADVYV  163 (448)
T ss_pred             HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcccCCCCEEE
Confidence            22           211 223332 13333 344457887777777666665        4566777888876322     


Q ss_pred             --CcCCccccccccccccc
Q 043239          268 --CQRSCLHWIMLCCLHML  284 (286)
Q Consensus       268 --~~~~~l~~~~~~tph~~  284 (286)
                        ....+|.+..-+.|++|
T Consensus       164 lElSSfQL~~~~~~~P~ia  182 (448)
T COG0771         164 LELSSFQLETTSSLRPEIA  182 (448)
T ss_pred             EEccccccccCccCCccEE
Confidence              12334444446666665

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=97.00  E-value=0.0025  Score=58.49  Aligned_cols=107  Identities=16%  Similarity=0.192  Sum_probs=71.3

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-----C-Ccc-----------cccCHHHhhcCCCEEEEeccCCh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----V-SYP-----------FYANVSGLAADSDVLIVCCALTE  211 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~-~~~-----------~~~~l~e~l~~aDiV~~~lp~~~  211 (286)
                      ++|+|+|.|.||+-+|-+|...|++|+.+.|+.+..     . +..           ......+....+|+|++++... 
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~-   81 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY-   81 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence            589999999999999999999999999998864221     1 110           0011112345789999998743 


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEE
Q 043239          212 ETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELV  258 (286)
Q Consensus       212 ~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~  258 (286)
                      ++...+ +...+.+.+++.+|-+-.|= -.++.+.+.+...++.++.
T Consensus        82 ~~~~al-~~l~~~l~~~t~vv~lQNGv-~~~e~l~~~~~~~~v~~g~  126 (305)
T PRK05708         82 DAEPAV-ASLAHRLAPGAELLLLQNGL-GSQDAVAARVPHARCIFAS  126 (305)
T ss_pred             hHHHHH-HHHHhhCCCCCEEEEEeCCC-CCHHHHHHhCCCCcEEEEE
Confidence            344433 45666778888888776653 3455667777655555443

>PRK09414 glutamate dehydrogenase; Provisional

Probab=97.00  E-value=0.008  Score=57.90  Aligned_cols=106  Identities=14%  Similarity=0.248  Sum_probs=72.1

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEE-CCCCCC---------------------CCCcc-----cccCHHH
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYT-SRKKKP---------------------GVSYP-----FYANVSG  195 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~-~r~~~~---------------------~~~~~-----~~~~l~e  195 (286)
                      +.+++|++|+|.|+|++|+.+|+.|..+|++|++. |.+..-                     ...+.     ...+.++
T Consensus       227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~  306 (445)
T PRK09414        227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS  306 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence            45689999999999999999999999999999877 522110                     00000     0112333


Q ss_pred             hhc-CCCEEEEeccCChhhhhcccHHHHhcCC-CC-cEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          196 LAA-DSDVLIVCCALTEETHHMINKDVMTALG-KE-GVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       196 ~l~-~aDiV~~~lp~~~~t~~~i~~~~l~~mk-~g-~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      ++. +|||++-|.     +.+.|+.+....++ ++ .+++-.+.+.+  +.+-.+.|.++.|.
T Consensus       307 i~~~d~DVliPaA-----l~n~It~~~a~~i~~~~akiIvEgAN~p~--t~~A~~~L~~rGI~  362 (445)
T PRK09414        307 PWSVPCDIALPCA-----TQNELDEEDAKTLIANGVKAVAEGANMPS--TPEAIEVFLEAGVL  362 (445)
T ss_pred             ccccCCcEEEecC-----CcCcCCHHHHHHHHHcCCeEEEcCCCCCC--CHHHHHHHHHCCcE
Confidence            333 699988775     46678888766663 23 47778888887  44455788888775

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.99  E-value=0.0022  Score=58.81  Aligned_cols=88  Identities=19%  Similarity=0.332  Sum_probs=57.4

Q ss_pred             CEEEEEcCChHHHHHHHHhccCC--CEEEEECCCCCCCCC-------------c--ccccCHHHhhcCCCEEEEeccCCh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFG--CSIAYTSRKKKPGVS-------------Y--PFYANVSGLAADSDVLIVCCALTE  211 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g--~~V~~~~r~~~~~~~-------------~--~~~~~l~e~l~~aDiV~~~lp~~~  211 (286)
                      ++|+|||.|.+|..+|..|...|  .+|..+|++.+...+             .  .....-.+.+++||+|+++.....
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~   80 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ   80 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence            47999999999999999999888  479999997765321             0  011122345789999999876421


Q ss_pred             h---hh--------hccc--HHHHhcCCCCcEEEEcCC
Q 043239          212 E---TH--------HMIN--KDVMTALGKEGVIINVGR  236 (286)
Q Consensus       212 ~---t~--------~~i~--~~~l~~mk~g~ilvn~sr  236 (286)
                      .   ++        .++.  ...+....|.+++++++.
T Consensus        81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN  118 (306)
T cd05291          81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN  118 (306)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence            1   11        1111  012333467889999973

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=96.98  E-value=0.0002  Score=62.23  Aligned_cols=118  Identities=18%  Similarity=0.162  Sum_probs=76.5

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC---------------------Cc-------------ccc
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV---------------------SY-------------PFY  190 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~---------------------~~-------------~~~  190 (286)
                      ...-+.|+|+|.|.||..+|+.....|++|+.+|++.+...                     ..             +..
T Consensus         8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~   87 (298)
T KOG2304|consen    8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTS   87 (298)
T ss_pred             cccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHc
Confidence            34456899999999999999999999999999998875321                     00             012


Q ss_pred             cCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCC
Q 043239          191 ANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVII-NVGRGALIDEKELVHFLVRGSLVELVLMCLRTSL  266 (286)
Q Consensus       191 ~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilv-n~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~  266 (286)
                      .++.++++++|+|+=++-.+-+.+.-+-++.=...|+.+++. |+|.   +...+++.++++. -+.++|-.|.+.|
T Consensus        88 tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~-srf~GlHFfNPvP  160 (298)
T KOG2304|consen   88 TNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRP-SRFAGLHFFNPVP  160 (298)
T ss_pred             CCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccCh-hhhceeeccCCch
Confidence            456677788888765554333322222233333357766654 3333   4556677776653 4467888887765

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.98  E-value=0.0024  Score=58.93  Aligned_cols=62  Identities=24%  Similarity=0.338  Sum_probs=46.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCCC-------c-------ccccCHHHhhcCCCEEEEecc
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGVS-------Y-------PFYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~~-------~-------~~~~~l~e~l~~aDiV~~~lp  208 (286)
                      .+++|+|||.|.+|..+|..|...|.  ++..+|++.+...+       .       ....+-.+.+++||+|+++.-
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag   82 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG   82 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence            56799999999999999999988887  79999987664321       0       011122356899999999753

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=96.98  E-value=0.0055  Score=50.79  Aligned_cols=95  Identities=13%  Similarity=0.217  Sum_probs=69.1

Q ss_pred             CCCEEEEEc--CChHHHHHHHHhccCCCEEEEECCCCCC--C----------------CCcccccCHHHhhcCCCEEEEe
Q 043239          147 GGKRVGIVG--LGSIGSEVAKRLVPFGCSIAYTSRKKKP--G----------------VSYPFYANVSGLAADSDVLIVC  206 (286)
Q Consensus       147 ~g~~vgIiG--~G~iG~~~A~~l~~~g~~V~~~~r~~~~--~----------------~~~~~~~~l~e~l~~aDiV~~~  206 (286)
                      .|++|+++|  -+++..+++..+..+|+++.+..+..-.  .                .......++++.++++|+|..-
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~   80 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD   80 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence            478999999  3899999999999999999888876622  1                0123457999999999999775


Q ss_pred             ccCC---hh--------hhhcccHHHHhcCCCCcEEEEcC---CCcccC
Q 043239          207 CALT---EE--------THHMINKDVMTALGKEGVIINVG---RGALID  241 (286)
Q Consensus       207 lp~~---~~--------t~~~i~~~~l~~mk~g~ilvn~s---rg~~vd  241 (286)
                      .--+   .+        ....++++.++.+|++++|..+.   ||.=++
T Consensus        81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~LP~~R~~Ev~  129 (158)
T PF00185_consen   81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPLPANRGEEVS  129 (158)
T ss_dssp             SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESSS--BTTSBE
T ss_pred             CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCCCCCCCceeC
Confidence            4320   11        22567899999999999999985   454333

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=96.97  E-value=0.007  Score=58.54  Aligned_cols=110  Identities=20%  Similarity=0.284  Sum_probs=79.9

Q ss_pred             CCCCEEEEEcC----ChHHHHHHHHhccCCC--EEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239          146 LGGKRVGIVGL----GSIGSEVAKRLVPFGC--SIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       146 l~g~~vgIiG~----G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      +.-++|+|||.    |.+|..+.+.|...|+  +|+.+++......+...+.+++++-...|++++++|. +.+..++. 
T Consensus         5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp~-~~~~~~l~-   82 (447)
T TIGR02717         5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPA-KYVPQVVE-   82 (447)
T ss_pred             cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecCH-HHHHHHHH-
Confidence            45679999999    8899999999999887  7888898877666777788999998889999999993 34444443 


Q ss_pred             HHHhcCCCCcE-EEEcCCCcc-----cCHHHHHHHHHhCCeeEEE
Q 043239          220 DVMTALGKEGV-IINVGRGAL-----IDEKELVHFLVRGSLVELV  258 (286)
Q Consensus       220 ~~l~~mk~g~i-lvn~srg~~-----vd~~al~~al~~~~i~ga~  258 (286)
                      +... ..-..+ ++.-+-++.     ..++.+.+..+++.++-.+
T Consensus        83 e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlG  126 (447)
T TIGR02717        83 ECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLG  126 (447)
T ss_pred             HHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence            2222 333344 443333332     3467888888888887554

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.95  E-value=0.0049  Score=56.16  Aligned_cols=106  Identities=12%  Similarity=0.175  Sum_probs=68.4

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCC---CCC------C----c-ccccCH------HHhhcCCCEE
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKK---PGV------S----Y-PFYANV------SGLAADSDVL  203 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~---~~~------~----~-~~~~~l------~e~l~~aDiV  203 (286)
                      .+.++++.|+|.|..+++++-.|...|. +|++++|+.+   +..      .    . ....++      .+.+.++|+|
T Consensus       121 ~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDiv  200 (288)
T PRK12749        121 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADIL  200 (288)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEE
Confidence            4678899999999999999999988887 7999999853   211      0    0 012222      3355689999


Q ss_pred             EEeccCChh--hhh-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239          204 IVCCALTEE--THH-MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       204 ~~~lp~~~~--t~~-~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i  254 (286)
                      +++.|..-.  ... ...  ....++++.++.|+--.. ..+ .|+++.++.++
T Consensus       201 INaTp~Gm~~~~~~~~~~--~~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~  250 (288)
T PRK12749        201 TNGTKVGMKPLENESLVN--DISLLHPGLLVTECVYNP-HMT-KLLQQAQQAGC  250 (288)
T ss_pred             EECCCCCCCCCCCCCCCC--cHHHCCCCCEEEEecCCC-ccC-HHHHHHHHCCC
Confidence            999986421  111 111  123467888999997544 333 45555555444

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=96.92  E-value=0.002  Score=58.98  Aligned_cols=106  Identities=14%  Similarity=0.189  Sum_probs=65.1

Q ss_pred             EEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-------------Cc--c--cccCHHHhhcCCCEEEEeccCC--
Q 043239          151 VGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-------------SY--P--FYANVSGLAADSDVLIVCCALT--  210 (286)
Q Consensus       151 vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-------------~~--~--~~~~l~e~l~~aDiV~~~lp~~--  210 (286)
                      |+|||.|.||..+|..+...|. +|+.+|++.+...             ..  .  ...+. +.+++||+|+++....  
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g~p~~   79 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAGIPRK   79 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecCCCCC
Confidence            6899999999999999886665 9999998765321             00  1  12344 4589999999976311  


Q ss_pred             h---------hhhhcccHHH---HhcCCCCcEEEEcCCCcccCHHHHHHHH--HhCCeeEEE
Q 043239          211 E---------ETHHMINKDV---MTALGKEGVIINVGRGALIDEKELVHFL--VRGSLVELV  258 (286)
Q Consensus       211 ~---------~t~~~i~~~~---l~~mk~g~ilvn~srg~~vd~~al~~al--~~~~i~ga~  258 (286)
                      +         .+..++ ++.   +....+.+++|+++...-+-...+.+..  ...++.|.+
T Consensus        80 ~~~~r~e~~~~n~~i~-~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlg  140 (300)
T cd01339          80 PGMSRDDLLGTNAKIV-KEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMA  140 (300)
T ss_pred             cCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEec
Confidence            1         111111 122   2233567788888755544555555543  233566666

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=96.92  E-value=0.0036  Score=55.83  Aligned_cols=97  Identities=22%  Similarity=0.215  Sum_probs=66.4

Q ss_pred             CcccCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCC-----------CCcccccCHHHhhcCCCEEEEeccC
Q 043239          142 LGSTLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPG-----------VSYPFYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       142 ~~~~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----------~~~~~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      +|.+++..+++|+|+ |.||..+|+.|.+.+.+....-|..+..           .+.....|++..+.+.|+++-... 
T Consensus       161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs-  239 (351)
T COG5322         161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVAS-  239 (351)
T ss_pred             hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEee-
Confidence            688999999999995 9999999999999888654444332211           122334566665555555543322 


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHH
Q 043239          210 TEETHHMINKDVMTALGKEGVIINVGRGALIDEK  243 (286)
Q Consensus       210 ~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~  243 (286)
                       -.+-..|+.+.   +|||+.+||-++..=+|+.
T Consensus       240 -~~~g~~I~pq~---lkpg~~ivD~g~P~dvd~~  269 (351)
T COG5322         240 -MPKGVEIFPQH---LKPGCLIVDGGYPKDVDTS  269 (351)
T ss_pred             -cCCCceechhh---ccCCeEEEcCCcCcccccc
Confidence             22445566554   6899999999998877765

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.87  E-value=0.0015  Score=54.17  Aligned_cols=70  Identities=21%  Similarity=0.225  Sum_probs=49.6

Q ss_pred             CCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC---C-ccc-ccCH-HHhhcCCCEEEEeccC
Q 043239          140 YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV---S-YPF-YANV-SGLAADSDVLIVCCAL  209 (286)
Q Consensus       140 ~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~---~-~~~-~~~l-~e~l~~aDiV~~~lp~  209 (286)
                      +++.-++.|++|.|||.|.+|...++.|...|++|+++++......   . ... ...+ ++-+.++|+|+.++..
T Consensus         5 ~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d   80 (157)
T PRK06719          5 YPLMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQ   80 (157)
T ss_pred             cceEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHHHHhccCcEEEecccChhcCCCceEEEECCCC
Confidence            4566789999999999999999999999999999999875432210   0 000 1111 1236788988887653

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.85  E-value=0.0011  Score=58.20  Aligned_cols=63  Identities=19%  Similarity=0.266  Sum_probs=48.2

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCC-------cc-------cccCHHHh-hcCCCEEEEeccCCh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS-------YP-------FYANVSGL-AADSDVLIVCCALTE  211 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~-------~~-------~~~~l~e~-l~~aDiV~~~lp~~~  211 (286)
                      |++.|+|+|.+|..+|+.|...|++|+..++..+....       ..       ....|.++ +.++|+++.+...+.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~   78 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDE   78 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCH
Confidence            58999999999999999999999999999887754221       11       12345555 788999998876543

>PRK14031 glutamate dehydrogenase; Provisional

Probab=96.84  E-value=0.0069  Score=58.24  Aligned_cols=106  Identities=14%  Similarity=0.148  Sum_probs=70.2

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC---CCc---------------------------ccccC
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG---VSY---------------------------PFYAN  192 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~---~~~---------------------------~~~~~  192 (286)
                      |.+|.|++|.|.|+|++|...|+.|..+|++|++.+.+....   .+.                           ....+
T Consensus       223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~  302 (444)
T PRK14031        223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE  302 (444)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence            557999999999999999999999999999998744322110   000                           00112


Q ss_pred             HHHhh-cCCCEEEEeccCChhhhhcccHHHHhcCCC-Cc-EEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          193 VSGLA-ADSDVLIVCCALTEETHHMINKDVMTALGK-EG-VIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       193 l~e~l-~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~-g~-ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      .++++ ..|||++=|.     +.+.|+++..+.++. |+ +|+--+.+ ++..++. +.|.++.|.
T Consensus       303 ~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI~  361 (444)
T PRK14031        303 GARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKIL  361 (444)
T ss_pred             CcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCcE
Confidence            33332 4588887664     678899998888865 44 45555666 5655554 555555553

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=96.83  E-value=0.0044  Score=57.15  Aligned_cols=109  Identities=17%  Similarity=0.261  Sum_probs=66.9

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCCC----------c----c-c-ccCHHHhhcCCCEEEEeccC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGVS----------Y----P-F-YANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~~----------~----~-~-~~~l~e~l~~aDiV~~~lp~  209 (286)
                      ..+|+|||.|.+|..+|..|...|.  ++..+|.+.+...+          +    . . ..+.+ .+++||+|+++.-.
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvitaG~   81 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVTAGA   81 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEECCCC
Confidence            3589999999999999999887665  78899987654320          0    1 1 13454 48999999996432


Q ss_pred             Ch---hhhh-cc--c----H---HHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCeeEE
Q 043239          210 TE---ETHH-MI--N----K---DVMTALGKEGVIINVGRGALIDEKELVHF--LVRGSLVEL  257 (286)
Q Consensus       210 ~~---~t~~-~i--~----~---~~l~~mk~g~ilvn~srg~~vd~~al~~a--l~~~~i~ga  257 (286)
                      .+   .++. ++  |    +   +.+....|.+++++++...=+-...+.+.  +...++-|.
T Consensus        82 ~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~  144 (312)
T cd05293          82 RQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGS  144 (312)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEec
Confidence            11   1221 11  1    1   12233467899999985443444444444  445565555

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=96.83  E-value=0.0045  Score=57.87  Aligned_cols=93  Identities=19%  Similarity=0.275  Sum_probs=59.3

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccC-CCEEE-EECCCC--CCCC----C---c---cccc--CHHHhhcCCCEEEEeccCCh
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPF-GCSIA-YTSRKK--KPGV----S---Y---PFYA--NVSGLAADSDVLIVCCALTE  211 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~-g~~V~-~~~r~~--~~~~----~---~---~~~~--~l~e~l~~aDiV~~~lp~~~  211 (286)
                      ++|+|+|. |.+|+.+++.|..+ ++++. .++++.  .+..    +   .   ..+.  +.++++.++|+|++|+|.. 
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~-   79 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG-   79 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence            47999998 99999999999987 56776 434332  1110    1   0   0122  4556667899999999954 


Q ss_pred             hhhhcccHHHHhc-CCCCcEEEEcCCCcccCHHHHHH
Q 043239          212 ETHHMINKDVMTA-LGKEGVIINVGRGALIDEKELVH  247 (286)
Q Consensus       212 ~t~~~i~~~~l~~-mk~g~ilvn~srg~~vd~~al~~  247 (286)
                      ...     +.... .+.|..+||.|..--.+..++++
T Consensus        80 ~s~-----~~~~~~~~~G~~VIDlS~~fR~~~~~~y~  111 (346)
T TIGR01850        80 VSA-----ELAPELLAAGVKVIDLSADFRLKDPEVYE  111 (346)
T ss_pred             HHH-----HHHHHHHhCCCEEEeCChhhhcCChhhhH
Confidence            222     22222 25789999998665555444333

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.83  E-value=0.014  Score=52.05  Aligned_cols=132  Identities=15%  Similarity=0.132  Sum_probs=91.6

Q ss_pred             hHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCC-----------EEE
Q 043239          107 GADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGC-----------SIA  175 (286)
Q Consensus       107 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-----------~V~  175 (286)
                      +|=-+++.+|+.+|-                    .+++|...+|.|+|.|..|..+|+.+...+.           +++
T Consensus         4 TaaV~lAgllnAlk~--------------------~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~   63 (254)
T cd00762           4 TASVAVAGLLAALKV--------------------TKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIW   63 (254)
T ss_pred             hHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEE
Confidence            455677888887774                    3456889999999999999999999987654           577


Q ss_pred             EECCCCC----C--CC----C---c----ccccCHHHhhc--CCCEEEEeccCChhhhhcccHHHHhcCC---CCcEEEE
Q 043239          176 YTSRKKK----P--GV----S---Y----PFYANVSGLAA--DSDVLIVCCALTEETHHMINKDVMTALG---KEGVIIN  233 (286)
Q Consensus       176 ~~~r~~~----~--~~----~---~----~~~~~l~e~l~--~aDiV~~~lp~~~~t~~~i~~~~l~~mk---~g~ilvn  233 (286)
                      .+|+..-    .  ..    .   +    ....+|.|+++  ..|+++-.-    ...+++.++.+..|.   +.++|.=
T Consensus        64 ~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFa  139 (254)
T cd00762          64 XVDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFA  139 (254)
T ss_pred             EECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEE
Confidence            7776531    1  10    0   1    12358999999  999887642    235789999999998   8899999


Q ss_pred             cCCCcc---cCHHHHHHHHHhCCeeEEEeecc
Q 043239          234 VGRGAL---IDEKELVHFLVRGSLVELVLMCL  262 (286)
Q Consensus       234 ~srg~~---vd~~al~~al~~~~i~ga~lDv~  262 (286)
                      .|+...   ...++.+++=+.+.|.+.+....
T Consensus       140 LSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~  171 (254)
T cd00762         140 LSNPTSKAECTAEEAYTATEGRAIFASGSPFH  171 (254)
T ss_pred             CCCcCCccccCHHHHHhhcCCCEEEEECCCCC
Confidence            998876   34444444433334555544433

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=96.82  E-value=0.0025  Score=59.21  Aligned_cols=58  Identities=24%  Similarity=0.287  Sum_probs=46.6

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCC------cc-c---ccCHHHhhcCCCEEEE
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS------YP-F---YANVSGLAADSDVLIV  205 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~------~~-~---~~~l~e~l~~aDiV~~  205 (286)
                      +++|||||-|..|+.|+.....+|++|.+.++++.....      .. .   ...+.++.+.||+|..
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~   68 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY   68 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence            479999999999999999999999999999987765431      01 1   2357789999999965

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.82  E-value=0.011  Score=54.40  Aligned_cols=97  Identities=16%  Similarity=0.283  Sum_probs=71.6

Q ss_pred             CCCCEEEEEcC---ChHHHHHHHHhccCCCEEEEECCCCCCCC---CcccccCHHHhhcCCCEEEEeccC--------Ch
Q 043239          146 LGGKRVGIVGL---GSIGSEVAKRLVPFGCSIAYTSRKKKPGV---SYPFYANVSGLAADSDVLIVCCAL--------TE  211 (286)
Q Consensus       146 l~g~~vgIiG~---G~iG~~~A~~l~~~g~~V~~~~r~~~~~~---~~~~~~~l~e~l~~aDiV~~~lp~--------~~  211 (286)
                      +.|++|+++|-   +++..+++..+..+|++|.+..+..-...   ......+++++++++|+|..-.=.        .+
T Consensus       154 l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~~~~  233 (305)
T PRK00856        154 LEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIEDADVVMMLRVQKERMDGGLLP  233 (305)
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhCCCCEEEECCcccccccccchH
Confidence            77899999997   58999999999999999998887553321   123468999999999999774310        01


Q ss_pred             h-----hhhcccHHHHhcCCCCcEEEEcC---CCcccCH
Q 043239          212 E-----THHMINKDVMTALGKEGVIINVG---RGALIDE  242 (286)
Q Consensus       212 ~-----t~~~i~~~~l~~mk~g~ilvn~s---rg~~vd~  242 (286)
                      +     ....++++.++.+|++++|.-+.   ||.=|+.
T Consensus       234 ~~~~~~~~y~v~~~ll~~a~~~~~~mHcLPa~Rg~Ev~~  272 (305)
T PRK00856        234 SYEEYKRSYGLTAERLALAKPDAIVMHPGPVNRGVEIAS  272 (305)
T ss_pred             HHHHHhccCccCHHHHhhcCCCCEEECCCCCCCCCccCH
Confidence            1     13456888898899999988874   5654443

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=96.78  E-value=0.0049  Score=54.67  Aligned_cols=81  Identities=10%  Similarity=0.174  Sum_probs=66.5

Q ss_pred             HHHHHHHhccCCCEEEEECCCCCCCC----------CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCc
Q 043239          160 GSEVAKRLVPFGCSIAYTSRKKKPGV----------SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEG  229 (286)
Q Consensus       160 G~~~A~~l~~~g~~V~~~~r~~~~~~----------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~  229 (286)
                      |..||-.+...|++|+..+++.+-..          ++....+=.+..+.+.+.++..|..+.|-++. ++.++++++|+
T Consensus        33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA  111 (340)
T COG4007          33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA  111 (340)
T ss_pred             chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence            77899999999999999998776543          33445566678999999999999998888765 68999999999


Q ss_pred             EEEEcCCCcccC
Q 043239          230 VIINVGRGALID  241 (286)
Q Consensus       230 ilvn~srg~~vd  241 (286)
                      ++.|+.+-+.+.
T Consensus       112 VicnTCT~sp~v  123 (340)
T COG4007         112 VICNTCTVSPVV  123 (340)
T ss_pred             EecccccCchhH
Confidence            999998876653

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.77  E-value=0.0086  Score=58.00  Aligned_cols=108  Identities=14%  Similarity=0.166  Sum_probs=69.5

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------Ccccc--cCHHHhhcCCCEEEEeccCChhh
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------SYPFY--ANVSGLAADSDVLIVCCALTEET  213 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------~~~~~--~~l~e~l~~aDiV~~~lp~~~~t  213 (286)
                      +.+++|+|+|+|..|.++|+.|+..|++|.++|++.....          +....  ....+.+.++|+|+.. |.-+.+
T Consensus        12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~~   90 (458)
T PRK01710         12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRID   90 (458)
T ss_pred             hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCCC
Confidence            6688999999999999999999999999999997653211          11111  1223446789999887 433322


Q ss_pred             hhcc-----------cH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239          214 HHMI-----------NK-DVM-TALGKEGVIINVGRGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       214 ~~~i-----------~~-~~l-~~mk~g~ilvn~srg~~vd~~al~~al~~~~i  254 (286)
                      ...+           .+ +.+ ...+...+-|-=+.|......-+...|+....
T Consensus        91 ~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~  144 (458)
T PRK01710         91 SPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGY  144 (458)
T ss_pred             chHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence            2222           11 122 22232244455568888888888888876444

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.76  E-value=0.0031  Score=55.37  Aligned_cols=88  Identities=22%  Similarity=0.266  Sum_probs=58.5

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-------------C-----------------c--c--
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-------------S-----------------Y--P--  188 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-------------~-----------------~--~--  188 (286)
                      ..|.+++|.|+|+|.+|..+|+.|...|. +++.+|...-...             +                 .  .  
T Consensus        17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~   96 (228)
T cd00757          17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY   96 (228)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            46889999999999999999999999998 6777764321100             0                 0  0  


Q ss_pred             --c--ccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcC
Q 043239          189 --F--YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       189 --~--~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                        .  ..++.++++++|+|+.|+. +..++..+++....   .+.-+|+++
T Consensus        97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g  143 (228)
T cd00757          97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGA  143 (228)
T ss_pred             cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence              0  1234567788998888764 56667666654443   233455554

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.75  E-value=0.005  Score=55.92  Aligned_cols=105  Identities=23%  Similarity=0.263  Sum_probs=72.2

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCCC----------cccccCHHHh--hcCCCEEEEeccCC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVS----------YPFYANVSGL--AADSDVLIVCCALT  210 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~~----------~~~~~~l~e~--l~~aDiV~~~lp~~  210 (286)
                      ....|+++.|+|.|-.+++++..|+..|+ +|++++|+.++...          ......+.++  ..++|+||+++|..
T Consensus       122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G  201 (283)
T COG0169         122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG  201 (283)
T ss_pred             cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence            34678999999999999999999999996 79999998876431          0011222221  22699999999966


Q ss_pred             hhhhh---cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          211 EETHH---MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       211 ~~t~~---~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      -.-..   .++   ...++++.++.|+--... ++.=|..|-++|
T Consensus       202 m~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~TplL~~A~~~G  242 (283)
T COG0169         202 MAGPEGDSPVP---AELLPKGAIVYDVVYNPL-ETPLLREARAQG  242 (283)
T ss_pred             CCCCCCCCCCc---HHhcCcCCEEEEeccCCC-CCHHHHHHHHcC
Confidence            44321   233   556789999999966553 455444444445

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.75  E-value=0.026  Score=51.01  Aligned_cols=129  Identities=18%  Similarity=0.172  Sum_probs=90.8

Q ss_pred             hHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccC----CC-------EEE
Q 043239          107 GADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPF----GC-------SIA  175 (286)
Q Consensus       107 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~----g~-------~V~  175 (286)
                      +|=-+++.+|+.+|-                    .+++|...+|.|+|.|.-|..+|+.+...    |.       +++
T Consensus         4 Ta~V~lAgllnAlk~--------------------~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~   63 (279)
T cd05312           4 TAAVALAGLLAALRI--------------------TGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIW   63 (279)
T ss_pred             HHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEE
Confidence            455677788887775                    34568899999999999999999999876    76       688


Q ss_pred             EECCCCC----C--CCC-----c---c--cccCHHHhhc--CCCEEEEeccCChhhhhcccHHHHhcCC---CCcEEEEc
Q 043239          176 YTSRKKK----P--GVS-----Y---P--FYANVSGLAA--DSDVLIVCCALTEETHHMINKDVMTALG---KEGVIINV  234 (286)
Q Consensus       176 ~~~r~~~----~--~~~-----~---~--~~~~l~e~l~--~aDiV~~~lp~~~~t~~~i~~~~l~~mk---~g~ilvn~  234 (286)
                      .+|+..-    .  ...     .   .  ...+|.|+++  .+|+++-+-    ...++++++.+..|.   +.++|.=.
T Consensus        64 ~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaL  139 (279)
T cd05312          64 LVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLS----GVGGAFTEEVVRAMAKSNERPIIFAL  139 (279)
T ss_pred             EEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeC----CCCCCCCHHHHHHHHhcCCCCEEEEC
Confidence            8887531    1  110     0   1  2358999999  889887642    124789999999998   88999999


Q ss_pred             CCCccc---CHHHHHHHHHhCCeeEEEe
Q 043239          235 GRGALI---DEKELVHFLVRGSLVELVL  259 (286)
Q Consensus       235 srg~~v---d~~al~~al~~~~i~ga~l  259 (286)
                      |+....   ..++.+++=+..-|.+.+.
T Consensus       140 SNPt~~~E~~pe~a~~~t~G~ai~ATGs  167 (279)
T cd05312         140 SNPTSKAECTAEDAYKWTDGRALFASGS  167 (279)
T ss_pred             CCcCCccccCHHHHHHhhcCCEEEEeCC
Confidence            988763   3344444333334665554

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.75  E-value=0.0023  Score=56.87  Aligned_cols=37  Identities=27%  Similarity=0.477  Sum_probs=32.6

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRK  180 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~  180 (286)
                      ..|.+++|+|+|+|.+|..+++.|...|. ++.++|..
T Consensus        28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            46899999999999999999999999997 67777643

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=96.75  E-value=0.012  Score=52.32  Aligned_cols=91  Identities=14%  Similarity=0.244  Sum_probs=56.8

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKE  228 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g  228 (286)
                      .++-|+|.|.+++++++.++..|++|+++|..++.....        ....++.+....|          .+.+..+.+.
T Consensus       101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~~--------~~~~~~~~~~~~~----------~~~~~~~~~~  162 (246)
T TIGR02964       101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPED--------LPDGVATLVTDEP----------EAEVAEAPPG  162 (246)
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCccccccc--------CCCCceEEecCCH----------HHHHhcCCCC
Confidence            489999999999999999999999999998654421110        0123332222111          1222234456


Q ss_pred             cEEEEcCCCcccCHHHHHHHHHhCCeeEE
Q 043239          229 GVIINVGRGALIDEKELVHFLVRGSLVEL  257 (286)
Q Consensus       229 ~ilvn~srg~~vd~~al~~al~~~~i~ga  257 (286)
                      +.+|=+.++.-.|...|..+|++....+.
T Consensus       163 t~vvi~th~h~~D~~~L~~aL~~~~~~YI  191 (246)
T TIGR02964       163 SYFLVLTHDHALDLELCHAALRRGDFAYF  191 (246)
T ss_pred             cEEEEEeCChHHHHHHHHHHHhCCCCcEE
Confidence            66666667777777777777754444333

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=96.74  E-value=0.0031  Score=59.66  Aligned_cols=97  Identities=21%  Similarity=0.290  Sum_probs=64.0

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHhccC-CCEEEEECCCCCCCC-----C-------cccccCHHH-hhcCCCEEEEeccCC
Q 043239          146 LGGKRVGIVGL-GSIGSEVAKRLVPF-GCSIAYTSRKKKPGV-----S-------YPFYANVSG-LAADSDVLIVCCALT  210 (286)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~A~~l~~~-g~~V~~~~r~~~~~~-----~-------~~~~~~l~e-~l~~aDiV~~~lp~~  210 (286)
                      -..++|+|+|. |.+|+.+.+.|... +++|..+.+....-.     .       .....+++. .++++|+|++++|..
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~  115 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG  115 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence            35568999995 99999999999987 668876654322211     0       011222222 258899999999853


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 043239          211 EETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHF  248 (286)
Q Consensus       211 ~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~a  248 (286)
                       .     ..+..+.|+.|..+||.|..-..+.++.++.
T Consensus       116 -~-----s~~i~~~~~~g~~VIDlSs~fRl~~~~~y~~  147 (381)
T PLN02968        116 -T-----TQEIIKALPKDLKIVDLSADFRLRDIAEYEE  147 (381)
T ss_pred             -H-----HHHHHHHHhCCCEEEEcCchhccCCcccchh
Confidence             2     2344444567899999997766666655543

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.72  E-value=0.0024  Score=58.34  Aligned_cols=106  Identities=24%  Similarity=0.371  Sum_probs=66.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------Cccc----ccC---HHHhhcCCCEEEEeccCChhh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SYPF----YAN---VSGLAADSDVLIVCCALTEET  213 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~~~----~~~---l~e~l~~aDiV~~~lp~~~~t  213 (286)
                      .|+.+||+|+|-+|.--.+..+++|++|++.+++.++.+      ++..    ..+   .+++...-|.++-+++.-  .
T Consensus       181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~--a  258 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL--A  258 (360)
T ss_pred             CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec--c
Confidence            799999999999999999999999999999999864322      2111    111   233445556655554421  1


Q ss_pred             hhcccHHHHhcCCCCcEEEEcC------------------------CCcccCHHHHHHHHHhCCee
Q 043239          214 HHMINKDVMTALGKEGVIINVG------------------------RGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       214 ~~~i~~~~l~~mk~g~ilvn~s------------------------rg~~vd~~al~~al~~~~i~  255 (286)
                      .+-+ +..+..||++..+|-++                        -|+..|++.+++...++.|.
T Consensus       259 ~~~~-~~~~~~lk~~Gt~V~vg~p~~~~~~~~~~lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik  323 (360)
T KOG0023|consen  259 EHAL-EPLLGLLKVNGTLVLVGLPEKPLKLDTFPLILGRKSIKGSIVGSRKETQEALDFVARGLIK  323 (360)
T ss_pred             ccch-HHHHHHhhcCCEEEEEeCcCCcccccchhhhcccEEEEeeccccHHHHHHHHHHHHcCCCc
Confidence            1111 23555566666555544                        24455666666666666654

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.72  E-value=0.003  Score=60.39  Aligned_cols=106  Identities=18%  Similarity=0.220  Sum_probs=64.8

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCc-----ccccCHHHhhcCCCEEEEeccCChhhh--------
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY-----PFYANVSGLAADSDVLIVCCALTEETH--------  214 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~-----~~~~~l~e~l~~aDiV~~~lp~~~~t~--------  214 (286)
                      .++|.|+|+|.+|.++|+.|+..|++|.++|++.......     ....+.+....++|+|+.+.+..+...        
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~   82 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS   82 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence            4689999999999999999999999999999865432210     011233344577998887754432211        


Q ss_pred             --hcccHHH--Hhc--CCCC-cEEEEcCCCcccCHHHHHHHHHhCC
Q 043239          215 --HMINKDV--MTA--LGKE-GVIINVGRGALIDEKELVHFLVRGS  253 (286)
Q Consensus       215 --~~i~~~~--l~~--mk~g-~ilvn~srg~~vd~~al~~al~~~~  253 (286)
                        .++.+..  +..  +.+. .+=|-=+.|......-+...|+..+
T Consensus        83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g  128 (418)
T PRK00683         83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLG  128 (418)
T ss_pred             CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcC
Confidence              1222211  121  1122 3444445777777777777776543

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.72  E-value=0.0041  Score=57.93  Aligned_cols=38  Identities=32%  Similarity=0.459  Sum_probs=34.2

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKK  181 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~  181 (286)
                      ..|++++|.|||+|.+|..+|+.|...|. ++.++|+..
T Consensus        20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            46899999999999999999999999998 788888754

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=96.69  E-value=0.04  Score=51.30  Aligned_cols=126  Identities=8%  Similarity=0.024  Sum_probs=81.9

Q ss_pred             HHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCC--hHHHHHHH
Q 043239           88 ECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLG--SIGSEVAK  165 (286)
Q Consensus        88 ~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G--~iG~~~A~  165 (286)
                      .+...+|+|.|..+...-++  .+|+=++.+..+                    .|..+.|++|+++|-+  ++..+++.
T Consensus       118 ~a~~~~vPVINa~~~~~HPt--QaL~Dl~Ti~e~--------------------~g~~l~gl~ia~vGD~~~~v~~Sl~~  175 (334)
T PRK01713        118 LAEYAGVPVFNGLTDEFHPT--QMLADVLTMIEN--------------------CDKPLSEISYVYIGDARNNMGNSLLL  175 (334)
T ss_pred             HHHhCCCCEEECCCCCCChH--HHHHHHHHHHHH--------------------cCCCcCCcEEEEECCCccCHHHHHHH
Confidence            34556899999865433232  223323332221                    1223788999999986  68899999


Q ss_pred             HhccCCCEEEEECCCCCCCC--------------C--cccccCHHHhhcCCCEEEEec----cCCh---h------hhhc
Q 043239          166 RLVPFGCSIAYTSRKKKPGV--------------S--YPFYANVSGLAADSDVLIVCC----ALTE---E------THHM  216 (286)
Q Consensus       166 ~l~~~g~~V~~~~r~~~~~~--------------~--~~~~~~l~e~l~~aDiV~~~l----p~~~---~------t~~~  216 (286)
                      .+..+|++|.+..+..-...              +  +....+++++++++|+|..-.    ....   .      ....
T Consensus       176 ~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~~w~sm~~~~~~~~~~~~~~~~y~  255 (334)
T PRK01713        176 IGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTDVWVSMGEPLETWGERIKLLMPYQ  255 (334)
T ss_pred             HHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcceeecccchhhHHHHHHhccCCc
Confidence            99999999998876432211              1  224578999999999998732    1100   1      1234


Q ss_pred             ccHHHHhcC-CCCcEEEEcC
Q 043239          217 INKDVMTAL-GKEGVIINVG  235 (286)
Q Consensus       217 i~~~~l~~m-k~g~ilvn~s  235 (286)
                      ++++.++.. |++++|.-+.
T Consensus       256 v~~ell~~a~k~~aivmH~l  275 (334)
T PRK01713        256 VTPELMKRTGNPKVKFMHCL  275 (334)
T ss_pred             CCHHHHhccCCCCCEEECCC
Confidence            678888886 7999998875

>PRK14030 glutamate dehydrogenase; Provisional

Probab=96.68  E-value=0.02  Score=55.04  Aligned_cols=106  Identities=15%  Similarity=0.236  Sum_probs=71.5

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCCEEEE--------ECCCCCCCC---------------------Cc--cccc
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAY--------TSRKKKPGV---------------------SY--PFYA  191 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~--------~~r~~~~~~---------------------~~--~~~~  191 (286)
                      +.++.|+||+|=|+|++|+..|+.|...|++|++        ++...-...                     .+  ....
T Consensus       223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i  302 (445)
T PRK14030        223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF  302 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence            4579999999999999999999999999999988        553211100                     00  0011


Q ss_pred             CHHHhh-cCCCEEEEeccCChhhhhcccHHHHhcCC-CC-cEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          192 NVSGLA-ADSDVLIVCCALTEETHHMINKDVMTALG-KE-GVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       192 ~l~e~l-~~aDiV~~~lp~~~~t~~~i~~~~l~~mk-~g-~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      +.++++ ..|||++-|.     +.+.|+.+..+.+. .+ .+++-.+.+ ++..++ .+.|++++|.
T Consensus       303 ~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA-~~iL~~rGI~  362 (445)
T PRK14030        303 AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEA-IDKFIAAKQL  362 (445)
T ss_pred             CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHH-HHHHHHCCCE
Confidence            223333 3588887664     67889888877772 22 467777888 455543 4777777775

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=96.68  E-value=0.0076  Score=55.46  Aligned_cols=90  Identities=18%  Similarity=0.190  Sum_probs=64.0

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhcc-------CCCEEEEECCCCCCCC--------------------------CcccccC
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVP-------FGCSIAYTSRKKKPGV--------------------------SYPFYAN  192 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~-------~g~~V~~~~r~~~~~~--------------------------~~~~~~~  192 (286)
                      -.-++|+|||.|+.|+.+|+.+..       |..+|..|-+..+...                          ......+
T Consensus        19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d   98 (372)
T KOG2711|consen   19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD   98 (372)
T ss_pred             cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence            345789999999999999998873       2335555543221100                          1123468


Q ss_pred             HHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 043239          193 VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       193 l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg  237 (286)
                      +.+++.+||+++..+|. +-+..++ ++...+.|+++..|.+..|
T Consensus        99 l~ea~~dADilvf~vPh-Qf~~~ic-~~l~g~vk~~~~aISL~KG  141 (372)
T KOG2711|consen   99 LVEAAKDADILVFVVPH-QFIPRIC-EQLKGYVKPGATAISLIKG  141 (372)
T ss_pred             HHHHhccCCEEEEeCCh-hhHHHHH-HHHhcccCCCCeEEEeecc
Confidence            99999999999999994 3444444 5788889999999998776

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=96.66  E-value=0.0089  Score=53.17  Aligned_cols=104  Identities=26%  Similarity=0.403  Sum_probs=70.8

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEEC-CC-------CCCCC---------C--cccc----------cCHH-
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTS-RK-------KKPGV---------S--YPFY----------ANVS-  194 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~-r~-------~~~~~---------~--~~~~----------~~l~-  194 (286)
                      ++.|+++.|-|+|.+|+.+|+.|...|.+|++.+ .+       .-...         +  ...+          .+-+ 
T Consensus        29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  108 (244)
T PF00208_consen   29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD  108 (244)
T ss_dssp             SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence            5899999999999999999999999999987652 21       10000         1  1111          1121 


Q ss_pred             Hhh-cCCCEEEEeccCChhhhhcccHHHHh-cCCCCc-EEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          195 GLA-ADSDVLIVCCALTEETHHMINKDVMT-ALGKEG-VIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       195 e~l-~~aDiV~~~lp~~~~t~~~i~~~~l~-~mk~g~-ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      +++ ..||+++-|.     ..+.|+.+... .+++++ +|+-.+.+.+. .++.. .|++++|.
T Consensus       109 ~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~t-~~a~~-~L~~rGI~  165 (244)
T PF00208_consen  109 EILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPLT-PEADE-ILRERGIL  165 (244)
T ss_dssp             HGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSBS-HHHHH-HHHHTT-E
T ss_pred             ccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhcc-HHHHH-HHHHCCCE
Confidence            455 5799999883     46678888888 887776 66677777765 44444 88888875

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.62  E-value=0.0082  Score=55.39  Aligned_cols=104  Identities=12%  Similarity=0.114  Sum_probs=77.3

Q ss_pred             HHHHHHHHhccCCCEEEEECCCCCCC-----------------------CC-------------cccccC--HHHhhcCC
Q 043239          159 IGSEVAKRLVPFGCSIAYTSRKKKPG-----------------------VS-------------YPFYAN--VSGLAADS  200 (286)
Q Consensus       159 iG~~~A~~l~~~g~~V~~~~r~~~~~-----------------------~~-------------~~~~~~--l~e~l~~a  200 (286)
                      ||..+|..+...|++|..+|++++..                       .+             .....+  ..+++++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            78999999999999999999987420                       00             001112  55788999


Q ss_pred             CEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239          201 DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS  265 (286)
Q Consensus       201 DiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e  265 (286)
                      |+|+-++|...+.+..+-.+..+.++++++|  +|.-+.+....|.+.+.. .=+..++-.|.+.
T Consensus        81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~~-p~r~~g~Hf~~Pp  142 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVAH-PERFLNAHWLNPA  142 (314)
T ss_pred             CEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcCC-cccEEEEecCCcc
Confidence            9999999999998888878888889999988  566667788888887742 2234556666544

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.58  E-value=0.0061  Score=54.05  Aligned_cols=38  Identities=29%  Similarity=0.466  Sum_probs=33.1

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKK  181 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~  181 (286)
                      ..|++.+|.|+|+|.+|..+|+.|...|. +++.+|...
T Consensus        20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            45899999999999999999999999997 677777543

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=96.58  E-value=0.0079  Score=56.82  Aligned_cols=91  Identities=25%  Similarity=0.463  Sum_probs=67.6

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCC------------------CCC------CcccccCHHHhh-
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK------------------PGV------SYPFYANVSGLA-  197 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~------------------~~~------~~~~~~~l~e~l-  197 (286)
                      +.++.|+||+|=|+|++|+.+|+.|...|.+|++.+-+..                  +..      +.... +-++++ 
T Consensus       202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i-~~~e~~~  280 (411)
T COG0334         202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYI-TNEELLE  280 (411)
T ss_pred             CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEc-ccccccc
Confidence            4459999999999999999999999999999988775554                  100      11111 224444 


Q ss_pred             cCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 043239          198 ADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALI  240 (286)
Q Consensus       198 ~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~v  240 (286)
                      .+|||.+=|.     +.+.|+.+..++++.. +++-.+.+.+.
T Consensus       281 ~~cDIl~PcA-----~~n~I~~~na~~l~ak-~V~EgAN~P~t  317 (411)
T COG0334         281 VDCDILIPCA-----LENVITEDNADQLKAK-IVVEGANGPTT  317 (411)
T ss_pred             ccCcEEcccc-----cccccchhhHHHhhhc-EEEeccCCCCC
Confidence            3689886553     7888999998988876 77888888865

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=96.54  E-value=0.021  Score=55.01  Aligned_cols=106  Identities=17%  Similarity=0.251  Sum_probs=69.7

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCCEEE-EECCCCC----------CC--------------CCc------cccc
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA-YTSRKKK----------PG--------------VSY------PFYA  191 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~-~~~r~~~----------~~--------------~~~------~~~~  191 (286)
                      +.++.|+||.|=|+|++|+..|+.|...|.+|+ +.|.+..          ..              ..+      ..+.
T Consensus       232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~  311 (454)
T PTZ00079        232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV  311 (454)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence            557999999999999999999999999999988 4554410          00              000      0011


Q ss_pred             CHHHhh-cCCCEEEEeccCChhhhhcccHHHHhcC-CCCcE-EEEcCCCcccCHHHHHHHHHhCCee
Q 043239          192 NVSGLA-ADSDVLIVCCALTEETHHMINKDVMTAL-GKEGV-IINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       192 ~l~e~l-~~aDiV~~~lp~~~~t~~~i~~~~l~~m-k~g~i-lvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      +-++++ -.||+.+-|.     +.+.|+.+..+.+ +.++. ++--+.+.+..  .-.+.|++++|.
T Consensus       312 ~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~--eA~~~L~~~GI~  371 (454)
T PTZ00079        312 PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPTTI--EATHLFKKNGVI  371 (454)
T ss_pred             CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCCCH--HHHHHHHHCCcE
Confidence            122222 3688887663     6778888877765 55554 55556666544  345677777765

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=96.54  E-value=0.0065  Score=56.73  Aligned_cols=89  Identities=20%  Similarity=0.260  Sum_probs=56.1

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccC-CCEEEE-ECCCCCCCC-----C-cc-----cccCHHH-hhcCCCEEEEeccCChhh
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPF-GCSIAY-TSRKKKPGV-----S-YP-----FYANVSG-LAADSDVLIVCCALTEET  213 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~-g~~V~~-~~r~~~~~~-----~-~~-----~~~~l~e-~l~~aDiV~~~lp~~~~t  213 (286)
                      ++|+|+|. |.+|+.+++.|... ++++.. .++......     + ..     .+.++++ ...++|+|++|+|.... 
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~-   81 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS-   81 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH-
Confidence            68999996 99999999999876 567654 554322110     0 11     1223333 45789999999995422 


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCcccCH
Q 043239          214 HHMINKDVMTALGKEGVIINVGRGALIDE  242 (286)
Q Consensus       214 ~~~i~~~~l~~mk~g~ilvn~srg~~vd~  242 (286)
                      ..++    ...++.|..+||.|-.--.+.
T Consensus        82 ~~~v----~~a~~aG~~VID~S~~fR~~~  106 (343)
T PRK00436         82 MDLA----PQLLEAGVKVIDLSADFRLKD  106 (343)
T ss_pred             HHHH----HHHHhCCCEEEECCcccCCCC
Confidence            2222    122357899999985555544

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=96.50  E-value=0.017  Score=52.04  Aligned_cols=60  Identities=25%  Similarity=0.389  Sum_probs=43.1

Q ss_pred             CEEEEEc-CChHHHHHHHHhcc-CCCEEE-EECCCCCCC-------------CCcccccCHHHhhcCCCEEEEecc
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVP-FGCSIA-YTSRKKKPG-------------VSYPFYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~-~g~~V~-~~~r~~~~~-------------~~~~~~~~l~e~l~~aDiV~~~lp  208 (286)
                      .+|+|+| +|.||+.+++.+.. -++++. +++|.....             .+...+.+++++...+|+|+.+.|
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~   77 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT   77 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC
Confidence            4899999 69999999999875 578865 567432211             122335788888567999999875

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=96.49  E-value=0.01  Score=55.32  Aligned_cols=62  Identities=19%  Similarity=0.320  Sum_probs=42.5

Q ss_pred             CEEEEEcCChHHHHHHHHhccC-CCEEEE-ECCCCCCC------------------------CCcccccCHHHhhcCCCE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF-GCSIAY-TSRKKKPG------------------------VSYPFYANVSGLAADSDV  202 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~-g~~V~~-~~r~~~~~------------------------~~~~~~~~l~e~l~~aDi  202 (286)
                      .+|||+|+|.||+.+++.+... ++++.+ .+++++..                        .+.....++++++.++|+
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV   81 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI   81 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence            4899999999999999988754 577764 44332100                        011122467788888999


Q ss_pred             EEEeccCC
Q 043239          203 LIVCCALT  210 (286)
Q Consensus       203 V~~~lp~~  210 (286)
                      |+.|.|..
T Consensus        82 VIdaT~~~   89 (341)
T PRK04207         82 VVDATPGG   89 (341)
T ss_pred             EEECCCch
Confidence            99998743

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.48  E-value=0.0043  Score=47.86  Aligned_cols=75  Identities=12%  Similarity=0.144  Sum_probs=54.5

Q ss_pred             HHHHHHHHhccCCCEEEEECCCCCCCC--------CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcE
Q 043239          159 IGSEVAKRLVPFGCSIAYTSRKKKPGV--------SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGV  230 (286)
Q Consensus       159 iG~~~A~~l~~~g~~V~~~~r~~~~~~--------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~i  230 (286)
                      -+..+++.|...|++|.+||+......        +.....++++.++.+|+|+++.+ .++-..+--.+....|+++.+
T Consensus        18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~-h~~f~~l~~~~~~~~~~~~~~   96 (106)
T PF03720_consen   18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATD-HDEFRELDWEEIAKLMRKPPV   96 (106)
T ss_dssp             HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS---GGGGCCGHHHHHHHSCSSEE
T ss_pred             HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEec-CHHHhccCHHHHHHhcCCCCE
Confidence            467899999999999999998765432        23345789999999999999986 344444434556677888999


Q ss_pred             EEEc
Q 043239          231 IINV  234 (286)
Q Consensus       231 lvn~  234 (286)
                      |||+
T Consensus        97 iiD~  100 (106)
T PF03720_consen   97 IIDG  100 (106)
T ss_dssp             EEES
T ss_pred             EEEC
Confidence            9998

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=96.46  E-value=0.024  Score=52.05  Aligned_cols=96  Identities=23%  Similarity=0.205  Sum_probs=69.4

Q ss_pred             CCCCEEEEEcCC---hHHHHHHHHhccCCCEEEEECCCCCCCC----------C--cccccCHHHhhcCCCEEEEeccC-
Q 043239          146 LGGKRVGIVGLG---SIGSEVAKRLVPFGCSIAYTSRKKKPGV----------S--YPFYANVSGLAADSDVLIVCCAL-  209 (286)
Q Consensus       146 l~g~~vgIiG~G---~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------~--~~~~~~l~e~l~~aDiV~~~lp~-  209 (286)
                      +.|.+|+++|-|   ++..+++..+..+|++|.+..+..-...          +  +....++++.++++|+|..---. 
T Consensus       148 l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~~~~  227 (301)
T TIGR00670       148 LDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTRIQK  227 (301)
T ss_pred             CCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECCccc
Confidence            788999999985   9999999999999999998887543211          1  12357899999999999773110 


Q ss_pred             -----Chh-----hhhcccHHHHhcCCCCcEEEEcC-CCcccC
Q 043239          210 -----TEE-----THHMINKDVMTALGKEGVIINVG-RGALID  241 (286)
Q Consensus       210 -----~~~-----t~~~i~~~~l~~mk~g~ilvn~s-rg~~vd  241 (286)
                           .++     ...-++++.++.++++++|.-+. ||.=|+
T Consensus       228 er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHclPRg~Ev~  270 (301)
T TIGR00670       228 ERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPLPRVDEID  270 (301)
T ss_pred             cccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCCCCCcccC
Confidence                 001     13345778888899999888664 554333

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.46  E-value=0.0028  Score=52.85  Aligned_cols=62  Identities=18%  Similarity=0.210  Sum_probs=48.3

Q ss_pred             EEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC---C-------cccccCHHHhhcCCCEEEEeccCChh
Q 043239          151 VGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV---S-------YPFYANVSGLAADSDVLIVCCALTEE  212 (286)
Q Consensus       151 vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~---~-------~~~~~~l~e~l~~aDiV~~~lp~~~~  212 (286)
                      |.|+|. |.+|+.+++.|...|++|.+..|++.+..   +       .....++.+.++.+|.|+.+++....
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~   73 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK   73 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence            678994 99999999999999999999999877532   1       11224567788999999999875433

...

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=96.44  E-value=0.0059  Score=60.31  Aligned_cols=104  Identities=15%  Similarity=0.163  Sum_probs=66.8

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCC--------cccccCHHHhh-cCCCEEEEeccCChh--h
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS--------YPFYANVSGLA-ADSDVLIVCCALTEE--T  213 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~--------~~~~~~l~e~l-~~aDiV~~~lp~~~~--t  213 (286)
                      .+.++++.|+|.|.+|++++..|...|++|++++|+.++...        .....++.+.. ..+|+|+.+.|..-.  .
T Consensus       376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~  455 (529)
T PLN02520        376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNV  455 (529)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCC
Confidence            577899999999999999999999999999999997654221        11122222222 357888888775421  1


Q ss_pred             hh-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          214 HH-MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       214 ~~-~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      .. .+.   ...++++.+++|+.-.. .++.=|..|-+.|
T Consensus       456 ~~~pl~---~~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G  491 (529)
T PLN02520        456 DETPIS---KHALKHYSLVFDAVYTP-KITRLLREAEESG  491 (529)
T ss_pred             CCCccc---HhhCCCCCEEEEeccCC-CcCHHHHHHHHCC
Confidence            11 122   23467788899996554 3344444444444

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.43  E-value=0.0038  Score=54.23  Aligned_cols=70  Identities=26%  Similarity=0.276  Sum_probs=51.5

Q ss_pred             CCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-------C---cccccCHHHhhcCCCEEEEeccCC
Q 043239          141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------S---YPFYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       141 ~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------~---~~~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      +...++.|++|.|||.|.+|..=++.|.+.|.+|++++++..+..       .   .....+.+ .+..+++|+.++++.
T Consensus         5 Pl~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~-~~~~~~lviaAt~d~   83 (210)
T COG1648           5 PLFLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAE-DLDDAFLVIAATDDE   83 (210)
T ss_pred             ceEEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChh-hhcCceEEEEeCCCH
Confidence            455679999999999999999999999999999999998773221       1   01112333 344599999988754


Q ss_pred             h
Q 043239          211 E  211 (286)
Q Consensus       211 ~  211 (286)
                      +
T Consensus        84 ~   84 (210)
T COG1648          84 E   84 (210)
T ss_pred             H
Confidence            3

>PLN02527 aspartate carbamoyltransferase

Probab=96.43  E-value=0.029  Score=51.53  Aligned_cols=93  Identities=23%  Similarity=0.266  Sum_probs=67.5

Q ss_pred             CCCCEEEEEcCC---hHHHHHHHHhccC-CCEEEEECCCCCCCC----------C--cccccCHHHhhcCCCEEEEeccC
Q 043239          146 LGGKRVGIVGLG---SIGSEVAKRLVPF-GCSIAYTSRKKKPGV----------S--YPFYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       146 l~g~~vgIiG~G---~iG~~~A~~l~~~-g~~V~~~~r~~~~~~----------~--~~~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      +.|.+|+++|-+   ++..+++..+..+ |++|.+..+..-...          +  +....++++++++||+|.+..-.
T Consensus       149 l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~q  228 (306)
T PLN02527        149 LDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRIQ  228 (306)
T ss_pred             cCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCcc
Confidence            778999999976   6899999998887 999988876543211          1  22357899999999999884311


Q ss_pred             Ch------h------hhhcccHHHHhcCCCCcEEEEcC-CCc
Q 043239          210 TE------E------THHMINKDVMTALGKEGVIINVG-RGA  238 (286)
Q Consensus       210 ~~------~------t~~~i~~~~l~~mk~g~ilvn~s-rg~  238 (286)
                      .+      .      ....++++.++.++++++|..+. ||.
T Consensus       229 ~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHclPRg~  270 (306)
T PLN02527        229 RERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPLPRLD  270 (306)
T ss_pred             hhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCCCCcc
Confidence            00      1      12556788888899999888774 554

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=96.42  E-value=0.0048  Score=56.69  Aligned_cols=60  Identities=23%  Similarity=0.326  Sum_probs=45.8

Q ss_pred             CEEEEEcCChHHHHHHHHhccCC--CEEEEECCCCCCCCC-------cc--------cccCHHHhhcCCCEEEEeccC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFG--CSIAYTSRKKKPGVS-------YP--------FYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g--~~V~~~~r~~~~~~~-------~~--------~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      ++|+|||.|.+|..+|..|...|  .+|..+|++.+...+       ..        ...+. +.+++||+|+++.+.
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~   77 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGA   77 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCC
Confidence            47999999999999999999888  479999987654321       10        01233 568999999999875

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.41  E-value=0.0064  Score=58.45  Aligned_cols=64  Identities=20%  Similarity=0.220  Sum_probs=48.2

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------Cc-------ccccCHHHh-hcCCCEEEEeccCChh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SY-------PFYANVSGL-AADSDVLIVCCALTEE  212 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~-------~~~~~l~e~-l~~aDiV~~~lp~~~~  212 (286)
                      |+|.|+|+|.+|+.+++.|...|++|++++++++...      +.       .....++++ +.++|.|+++++....
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~   78 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET   78 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence            4799999999999999999999999999988665321      11       112345555 7889999999885433

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=96.40  E-value=0.032  Score=54.33  Aligned_cols=98  Identities=12%  Similarity=0.223  Sum_probs=68.1

Q ss_pred             cCCCCEEEEEcC----------ChHHHHHHHHhccCCCEEEEECCCCCCCCC---------------------------c
Q 043239          145 TLGGKRVGIVGL----------GSIGSEVAKRLVPFGCSIAYTSRKKKPGVS---------------------------Y  187 (286)
Q Consensus       145 ~l~g~~vgIiG~----------G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~---------------------------~  187 (286)
                      .+.|++|+|+|+          ..-...+++.|...|.+|.+||+.......                           .
T Consensus       321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (473)
T PLN02353        321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV  400 (473)
T ss_pred             ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence            478999999998          557889999999999999999986433110                           1


Q ss_pred             ccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHH
Q 043239          188 PFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKEL  245 (286)
Q Consensus       188 ~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al  245 (286)
                      ....++.+++++||+|+++..- ++-+.+--+.....|++..+|+|. |+ +.|.+.+
T Consensus       401 ~~~~~~~~a~~~aD~vvi~t~~-~ef~~l~~~~~~~~m~~~~~viD~-rn-~l~~~~~  455 (473)
T PLN02353        401 SVVWDAYEATKGAHGICILTEW-DEFKTLDYQKIYDNMQKPAFVFDG-RN-VLDHEKL  455 (473)
T ss_pred             eeeCCHHHHhcCCCEEEECCCC-hHhcccCHHHHHHhccCCCEEEEC-CC-CCCHHHH
Confidence            1234567899999999998763 333433223345667766689996 44 4565444

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=96.40  E-value=0.12  Score=47.42  Aligned_cols=124  Identities=14%  Similarity=0.171  Sum_probs=83.8

Q ss_pred             HhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcC-ChHHHHHHHHh
Q 043239           89 CRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGL-GSIGSEVAKRL  167 (286)
Q Consensus        89 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~-G~iG~~~A~~l  167 (286)
                      +...+++|.|+.+...-++  .+|+=++.+.++                    .| .+.|.+|+++|- +++.++++..+
T Consensus       116 a~~~~vPVINag~~~~HPt--QaL~Dl~Ti~e~--------------------~g-~l~gl~i~~vGd~~~v~~Sl~~~l  172 (304)
T PRK00779        116 AEYSTVPVINGLTDLSHPC--QILADLLTIYEH--------------------RG-SLKGLKVAWVGDGNNVANSLLLAA  172 (304)
T ss_pred             HHhCCCCEEeCCCCCCChH--HHHHHHHHHHHH--------------------hC-CcCCcEEEEEeCCCccHHHHHHHH
Confidence            4556899999876443332  233333333222                    11 267899999997 88999999999


Q ss_pred             ccCCCEEEEECCCCCCCC-----------C--cccccCHHHhhcCCCEEEEe----ccCCh---h-----hhhcccHHHH
Q 043239          168 VPFGCSIAYTSRKKKPGV-----------S--YPFYANVSGLAADSDVLIVC----CALTE---E-----THHMINKDVM  222 (286)
Q Consensus       168 ~~~g~~V~~~~r~~~~~~-----------~--~~~~~~l~e~l~~aDiV~~~----lp~~~---~-----t~~~i~~~~l  222 (286)
                      ..+|++|.+..+..-...           +  +....+++++++++|+|..-    .....   +     ...-++++.+
T Consensus       173 ~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l  252 (304)
T PRK00779        173 ALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELM  252 (304)
T ss_pred             HHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCccccccchhHHHHHHHhcccCCCHHHH
Confidence            999999988876543221           1  22357999999999999874    11101   1     2344678888


Q ss_pred             hcCCCCcEEEEcC
Q 043239          223 TALGKEGVIINVG  235 (286)
Q Consensus       223 ~~mk~g~ilvn~s  235 (286)
                      +.+|++++|.-+.
T Consensus       253 ~~~~~~~ivmHpl  265 (304)
T PRK00779        253 ALAKPDAIFMHCL  265 (304)
T ss_pred             HhcCCCeEEecCC
Confidence            8899999988875

>PRK11579 putative oxidoreductase; Provisional

Probab=96.39  E-value=0.02  Score=53.32  Aligned_cols=62  Identities=18%  Similarity=0.233  Sum_probs=45.1

Q ss_pred             CEEEEEcCChHHHH-HHHHhccC-CCEEE-EECCCCCCCC----CcccccCHHHhhc--CCCEEEEeccCC
Q 043239          149 KRVGIVGLGSIGSE-VAKRLVPF-GCSIA-YTSRKKKPGV----SYPFYANVSGLAA--DSDVLIVCCALT  210 (286)
Q Consensus       149 ~~vgIiG~G~iG~~-~A~~l~~~-g~~V~-~~~r~~~~~~----~~~~~~~l~e~l~--~aDiV~~~lp~~  210 (286)
                      .+|||||+|.||+. .+..+... ++++. +++++.++..    ....+.+++++++  +.|+|++|+|..
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~   75 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPND   75 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcH
Confidence            48999999999985 56666543 67875 5777654321    2335689999996  479999999854

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.39  E-value=0.019  Score=54.86  Aligned_cols=87  Identities=17%  Similarity=0.239  Sum_probs=62.2

Q ss_pred             CCCCEEEEEcC----------ChHHHHHHHHhccCCCEEEEECCCCCCCC--CcccccCHHHhhcCCCEEEEeccCChhh
Q 043239          146 LGGKRVGIVGL----------GSIGSEVAKRLVPFGCSIAYTSRKKKPGV--SYPFYANVSGLAADSDVLIVCCALTEET  213 (286)
Q Consensus       146 l~g~~vgIiG~----------G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--~~~~~~~l~e~l~~aDiV~~~lp~~~~t  213 (286)
                      +.|++|+|+|+          ..-...+++.|...|.+|.+||+......  ......++++.++++|.|+++..- ++-
T Consensus       311 ~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~ad~~v~~t~~-~~~  389 (411)
T TIGR03026       311 LKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPLIDDLEEALKGADALVILTDH-DEF  389 (411)
T ss_pred             ccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcccCCCHHHHHhCCCEEEEecCC-HHH
Confidence            68999999998          45788999999999999999998754322  122247888999999999998763 333


Q ss_pred             hhcccHHHHhcCCCCcEEEEc
Q 043239          214 HHMINKDVMTALGKEGVIINV  234 (286)
Q Consensus       214 ~~~i~~~~l~~mk~g~ilvn~  234 (286)
                      +.+--+.....|+ ..+++|.
T Consensus       390 ~~~~~~~~~~~~~-~~~v~D~  409 (411)
T TIGR03026       390 KDLDLEKIKDLMK-GKVVVDT  409 (411)
T ss_pred             hccCHHHHHHhcC-CCEEEeC
Confidence            3332223334455 4578885

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK05086 malate dehydrogenase; Provisional

Probab=96.37  E-value=0.019  Score=52.87  Aligned_cols=90  Identities=16%  Similarity=0.232  Sum_probs=56.7

Q ss_pred             CEEEEEcC-ChHHHHHHHHhc---cCCCEEEEECCCCCCC----C----C-ccc-----ccCHHHhhcCCCEEEEeccCC
Q 043239          149 KRVGIVGL-GSIGSEVAKRLV---PFGCSIAYTSRKKKPG----V----S-YPF-----YANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~---~~g~~V~~~~r~~~~~----~----~-~~~-----~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      ++|+|||. |.+|..++..+.   ..+..+..+++++...    +    . ...     ..++.+.++++|+|+++.-..
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~   80 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA   80 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence            58999999 999999998773   3445788888764331    0    1 010     245667889999999986532


Q ss_pred             hh---hh-hc------ccHHHHhcC---CCCcEEEEcCCCc
Q 043239          211 EE---TH-HM------INKDVMTAL---GKEGVIINVGRGA  238 (286)
Q Consensus       211 ~~---t~-~~------i~~~~l~~m---k~g~ilvn~srg~  238 (286)
                      ..   ++ .+      +-++..+.|   .+.+++++++...
T Consensus        81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~  121 (312)
T PRK05086         81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV  121 (312)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence            11   01 11      112333333   5678999996654

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=96.34  E-value=0.036  Score=51.62  Aligned_cols=91  Identities=13%  Similarity=0.080  Sum_probs=68.0

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC--------------C--cccccCHHHhhcCCCEEEEec
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV--------------S--YPFYANVSGLAADSDVLIVCC  207 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------------~--~~~~~~l~e~l~~aDiV~~~l  207 (286)
                      .+.|.+|+++|- .++..+++..+..+|++|.+..+..-...              +  +....+++++++++|+|..-.
T Consensus       151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~  230 (338)
T PRK02255        151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDV  230 (338)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence            488999999996 68899999999999999998876542211              1  223578999999999998822


Q ss_pred             -----cCCh---h------hhhcccHHHHhcCCCCcEEEEcC
Q 043239          208 -----ALTE---E------THHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       208 -----p~~~---~------t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                           ....   +      ....++++.++.+|++++|.-+.
T Consensus       231 w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpL  272 (338)
T PRK02255        231 WYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCL  272 (338)
T ss_pred             cHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCC
Confidence                 1100   1      12567889999999999998885

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=96.34  E-value=0.013  Score=53.94  Aligned_cols=103  Identities=21%  Similarity=0.301  Sum_probs=68.3

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC------------CC----cccccCHHHhhcCCCEEEEeccCChh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG------------VS----YPFYANVSGLAADSDVLIVCCALTEE  212 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~------------~~----~~~~~~l~e~l~~aDiV~~~lp~~~~  212 (286)
                      ++|.|+|.|.||.-++.+|...|..|+.+.|++...            .+    ......-.+.+..+|+|++++... +
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~-q   79 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY-Q   79 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc-c
Confidence            589999999999999999999998888888876410            01    011223335567899999998643 4


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239          213 THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       213 t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i  254 (286)
                      +...+ +...+.+++.+.++-+-.|= =..+.+-+...+.++
T Consensus        80 ~~~al-~~l~~~~~~~t~vl~lqNG~-g~~e~l~~~~~~~~i  119 (307)
T COG1893          80 LEEAL-PSLAPLLGPNTVVLFLQNGL-GHEEELRKILPKETV  119 (307)
T ss_pred             HHHHH-HHhhhcCCCCcEEEEEeCCC-cHHHHHHHhCCcceE
Confidence            44443 45667778887777665552 233355555555533

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.32  E-value=0.045  Score=49.82  Aligned_cols=111  Identities=13%  Similarity=0.134  Sum_probs=77.8

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCC--CCCCCCcccccCHHHhhcCCCEEEEeccCChhhh----------h
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRK--KKPGVSYPFYANVSGLAADSDVLIVCCALTEETH----------H  215 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~--~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~----------~  215 (286)
                      |++++|||--.--..+++.|...|++|..+.-.  ...-.+.....+.++.++++|+|++=+|.+....          -
T Consensus         1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~   80 (287)
T TIGR02853         1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNEKV   80 (287)
T ss_pred             CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccCCceEecccccCCc
Confidence            679999999999999999999999998766543  2222344445566667999999999999665421          1


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239          216 MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS  265 (286)
Q Consensus       216 ~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e  265 (286)
                      .++++.+.+|+++++ +-+|    ++..++-++.++++|.  ..|.++.+
T Consensus        81 ~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi~--v~~~~~~~  123 (287)
T TIGR02853        81 VLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGVK--LIELFERD  123 (287)
T ss_pred             cccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCCe--EEEEEecc
Confidence            246789999998665 4444    3445555677778876  45544444

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=96.29  E-value=0.0067  Score=55.13  Aligned_cols=103  Identities=18%  Similarity=0.192  Sum_probs=68.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCCC--------c----ccccC---HHHhhcCCCEEEEeccC
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVS--------Y----PFYAN---VSGLAADSDVLIVCCAL  209 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~~--------~----~~~~~---l~e~l~~aDiV~~~lp~  209 (286)
                      +.++++.|+|.|-.|++++-.|...|+ +|++++|+.++...        .    ....+   +.+.+..+|+|+.+.|.
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~  204 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPM  204 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCC
Confidence            557899999999999999999999998 79999998754321        0    01112   23456789999999986


Q ss_pred             Chhhh--hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          210 TEETH--HMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       210 ~~~t~--~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      .-...  ..++.   ..+.++.++.|+--.. ..+.-|..|-+.|
T Consensus       205 Gm~~~~~~~~~~---~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G  245 (283)
T PRK14027        205 GMPAHPGTAFDV---SCLTKDHWVGDVVYMP-IETELLKAARALG  245 (283)
T ss_pred             CCCCCCCCCCCH---HHcCCCcEEEEcccCC-CCCHHHHHHHHCC
Confidence            53211  11222   3466788899986544 4444444454444

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=96.28  E-value=0.071  Score=54.62  Aligned_cols=119  Identities=13%  Similarity=0.183  Sum_probs=90.8

Q ss_pred             CeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCC
Q 043239           93 GILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGC  172 (286)
Q Consensus        93 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~  172 (286)
                      +|++.|.- .  .-+|=-+++.+++.+|-                    .++++...+|.|.|.|.-|..+++.|...|.
T Consensus       153 ~ip~f~DD-~--~GTa~v~lA~l~na~~~--------------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~  209 (752)
T PRK07232        153 DIPVFHDD-Q--HGTAIISAAALLNALEL--------------------VGKKIEDVKIVVSGAGAAAIACLNLLVALGA  209 (752)
T ss_pred             CCCeeccc-c--chHHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECccHHHHHHHHHHHHcCC
Confidence            67888763 2  24666677888887765                    3567889999999999999999999999888


Q ss_pred             ---EEEEECCCCC----C---CCC-------cccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcC
Q 043239          173 ---SIAYTSRKKK----P---GVS-------YPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       173 ---~V~~~~r~~~----~---~~~-------~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                         +++.+|+..-    .   ...       .....+|.|+++.+|+++-. .    ..++++++.+..|.+.+++.=.|
T Consensus       210 ~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~-s----~~g~~~~~~v~~M~~~piifals  284 (752)
T PRK07232        210 KKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGL-S----AAGVLTPEMVKSMADNPIIFALA  284 (752)
T ss_pred             CcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccCCEEEecC
Confidence               6888886431    1   110       11235899999999988653 2    25799999999999999999999


Q ss_pred             CCcc
Q 043239          236 RGAL  239 (286)
Q Consensus       236 rg~~  239 (286)
                      ....
T Consensus       285 NP~~  288 (752)
T PRK07232        285 NPDP  288 (752)
T ss_pred             CCCc
Confidence            8875

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.28  E-value=0.0018  Score=52.60  Aligned_cols=60  Identities=20%  Similarity=0.325  Sum_probs=45.2

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccCCC--EEEEECCCCCCCC---------------CcccccCHHHhhcCCCEEEEecc
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPFGC--SIAYTSRKKKPGV---------------SYPFYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~---------------~~~~~~~l~e~l~~aDiV~~~lp  208 (286)
                      ++|+|||. |.+|..+|..|...+.  ++..+|+......               ......+..+.+++||+|+++.-
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag   78 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG   78 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence            48999999 9999999999886654  7999998754322               01122355678899999999863

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=96.23  E-value=0.0079  Score=48.64  Aligned_cols=86  Identities=14%  Similarity=0.290  Sum_probs=49.3

Q ss_pred             EEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcE
Q 043239          151 VGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGV  230 (286)
Q Consensus       151 vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~i  230 (286)
                      +.|+|.|.+++++++.++.+|++|+++|..++.             +..++-+. +.+.    ..+.  +.+ .+.+++.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~-------------~~~~~~~~-~~~~----~~~~--~~~-~~~~~t~   59 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER-------------FPEADEVI-CIPP----DDIL--EDL-EIDPNTA   59 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC--------------TTSSEEE-CSHH----HHHH--HHC--S-TT-E
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc-------------cCCCCccE-ecCh----HHHH--hcc-CCCCCeE
Confidence            468999999999999999999999999876432             12334332 2221    1110  111 3455555


Q ss_pred             EEEcCCCcccCHHHHHHHHHhCCeeEEEe
Q 043239          231 IINVGRGALIDEKELVHFLVRGSLVELVL  259 (286)
Q Consensus       231 lvn~srg~~vd~~al~~al~~~~i~ga~l  259 (286)
                      +| +.++.-.|...|..+|++ ...+.++
T Consensus        60 Vv-~th~h~~D~~~L~~~l~~-~~~YiG~   86 (136)
T PF13478_consen   60 VV-MTHDHELDAEALEAALAS-PARYIGL   86 (136)
T ss_dssp             EE---S-CCCHHHHHHHHTTS-S-SEEEE
T ss_pred             EE-EcCCchhHHHHHHHHHcC-CCCEEEe
Confidence            55 777877888777777776 4555544

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.23  E-value=0.0042  Score=58.63  Aligned_cols=60  Identities=22%  Similarity=0.348  Sum_probs=43.8

Q ss_pred             EEEEcCChHHHHHHHHhccCC-C-EEEEECCCCCCCC---------C-------cccccCHHHhhcCCCEEEEeccCC
Q 043239          151 VGIVGLGSIGSEVAKRLVPFG-C-SIAYTSRKKKPGV---------S-------YPFYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       151 vgIiG~G~iG~~~A~~l~~~g-~-~V~~~~r~~~~~~---------~-------~~~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      |+|+|.|.+|+.+++.|...+ . +|++.+|+.++..         .       .....++.++++++|+|+.|+|..
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~   78 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF   78 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence            789999999999999999876 4 8999999876521         1       111234778999999999999743

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.19  E-value=0.018  Score=50.06  Aligned_cols=37  Identities=30%  Similarity=0.494  Sum_probs=33.0

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRK  180 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~  180 (286)
                      ..|++.+|+|+|+|.+|..+|+.|...|. ++..+|..
T Consensus        24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            45889999999999999999999999998 58888765

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=96.15  E-value=0.013  Score=53.76  Aligned_cols=106  Identities=17%  Similarity=0.318  Sum_probs=63.7

Q ss_pred             EEEEcCChHHHHHHHHhccCC--CEEEEECCCCCCCC----------Cc----cc--ccCHHHhhcCCCEEEEeccCChh
Q 043239          151 VGIVGLGSIGSEVAKRLVPFG--CSIAYTSRKKKPGV----------SY----PF--YANVSGLAADSDVLIVCCALTEE  212 (286)
Q Consensus       151 vgIiG~G~iG~~~A~~l~~~g--~~V~~~~r~~~~~~----------~~----~~--~~~l~e~l~~aDiV~~~lp~~~~  212 (286)
                      |+|||.|.+|..+|..+...|  .++..+|+..+...          ..    ..  ..+ .+.+++||+|+++......
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~   79 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK   79 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence            589999999999999998878  47999998775432          10    11  123 4688999999998753211


Q ss_pred             ---hh--------hccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCeeEE
Q 043239          213 ---TH--------HMIN--KDVMTALGKEGVIINVGRGALIDEKELVHF--LVRGSLVEL  257 (286)
Q Consensus       213 ---t~--------~~i~--~~~l~~mk~g~ilvn~srg~~vd~~al~~a--l~~~~i~ga  257 (286)
                         ++        .++.  ...+....|.+++++++...=+-...+.+.  +...++.|.
T Consensus        80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~~~~sg~~~~kviG~  139 (300)
T cd00300          80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVAQKLSGLPKNRVIGS  139 (300)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHHHHHhCcCHHHEEec
Confidence               11        1111  012223357889999974432333333333  334455444

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.15  E-value=0.0042  Score=48.08  Aligned_cols=80  Identities=21%  Similarity=0.212  Sum_probs=51.0

Q ss_pred             EEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc-------cccCHHH-hhcCCCEEEEeccCChhhhhcc
Q 043239          151 VGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP-------FYANVSG-LAADSDVLIVCCALTEETHHMI  217 (286)
Q Consensus       151 vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~-------~~~~l~e-~l~~aDiV~~~lp~~~~t~~~i  217 (286)
                      |.|+|+|.+|+.+++.|+..+.+|++.+++++...     +..       ....+++ -++++|.|+++.+....+..+ 
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~-   79 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLI-   79 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHH-
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHH-
Confidence            57999999999999999997779999988765321     211       1122333 268899999988754333322 


Q ss_pred             cHHHHhcCCCCcEEE
Q 043239          218 NKDVMTALGKEGVII  232 (286)
Q Consensus       218 ~~~~l~~mk~g~ilv  232 (286)
                       ...+..+.+...++
T Consensus        80 -~~~~r~~~~~~~ii   93 (116)
T PF02254_consen   80 -ALLARELNPDIRII   93 (116)
T ss_dssp             -HHHHHHHTTTSEEE
T ss_pred             -HHHHHHHCCCCeEE
Confidence             34445445554444

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK08223 hypothetical protein; Validated

Probab=96.13  E-value=0.018  Score=52.31  Aligned_cols=37  Identities=27%  Similarity=0.414  Sum_probs=32.6

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRK  180 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~  180 (286)
                      ..|++.+|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus        23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D   60 (287)
T PRK08223         23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD   60 (287)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            46899999999999999999999999998 67777754

>PRK08328 hypothetical protein; Provisional

Probab=96.13  E-value=0.015  Score=51.19  Aligned_cols=38  Identities=32%  Similarity=0.496  Sum_probs=33.3

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKK  181 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~  181 (286)
                      ..|.+++|.|+|+|.+|..+++.|...|. ++.++|...
T Consensus        23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            46899999999999999999999999998 687887543

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=96.12  E-value=0.19  Score=46.21  Aligned_cols=125  Identities=13%  Similarity=0.142  Sum_probs=83.7

Q ss_pred             HHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcC-ChHHHHHHHH
Q 043239           88 ECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGL-GSIGSEVAKR  166 (286)
Q Consensus        88 ~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~-G~iG~~~A~~  166 (286)
                      .++..+|+|.|+.+...-++  .+|+=++.+.++                    .| .+.|.+|+++|- +++.++++..
T Consensus       111 ~a~~~~vPVINa~~~~~HPt--QaL~Dl~Ti~e~--------------------~g-~l~g~~v~~vGd~~~v~~Sl~~~  167 (304)
T TIGR00658       111 LAKYASVPVINGLTDLFHPC--QALADLLTIIEH--------------------FG-KLKGVKVVYVGDGNNVCNSLMLA  167 (304)
T ss_pred             HHHhCCCCEEECCCCCCChH--HHHHHHHHHHHH--------------------hC-CCCCcEEEEEeCCCchHHHHHHH
Confidence            34556899999866443333  233333332222                    11 277899999996 7899999999


Q ss_pred             hccCCCEEEEECCCCCCCC--------------C--cccccCHHHhhcCCCEEEEec--cCC-----h-----hhhhccc
Q 043239          167 LVPFGCSIAYTSRKKKPGV--------------S--YPFYANVSGLAADSDVLIVCC--ALT-----E-----ETHHMIN  218 (286)
Q Consensus       167 l~~~g~~V~~~~r~~~~~~--------------~--~~~~~~l~e~l~~aDiV~~~l--p~~-----~-----~t~~~i~  218 (286)
                      +..+|++|.+..+..-...              +  +....+++++++++|+|.+-.  ...     +     .....++
T Consensus       168 l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~l~  247 (304)
T TIGR00658       168 GAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVWVSMGEEDKKEERLKLFRPYQVN  247 (304)
T ss_pred             HHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCcccCccccccHHHHHHhcCCcCC
Confidence            9999999988876443221              1  223578999999999998742  100     0     1234578


Q ss_pred             HHHHhcCCCCcEEEEcC
Q 043239          219 KDVMTALGKEGVIINVG  235 (286)
Q Consensus       219 ~~~l~~mk~g~ilvn~s  235 (286)
                      ++.++.+|++++|.-+.
T Consensus       248 ~~~l~~~~~~~ivmHpl  264 (304)
T TIGR00658       248 EELMELAKPEVIFMHCL  264 (304)
T ss_pred             HHHHhhcCCCCEEECCC
Confidence            88899999999988885

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.12  E-value=0.035  Score=53.38  Aligned_cols=108  Identities=19%  Similarity=0.231  Sum_probs=68.3

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------Ccc--cccCHHHhhcCCCEEEEeccCChh
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------SYP--FYANVSGLAADSDVLIVCCALTEE  212 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------~~~--~~~~l~e~l~~aDiV~~~lp~~~~  212 (286)
                      ++.++++.|+|.|.+|.++|+.|...|++|+++++......          +..  .....++....+|+|+.+.-..+.
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~   81 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD   81 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence            36789999999999999999999999999999998752210          111  112233556789999887543333


Q ss_pred             hhhcc----------cH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          213 THHMI----------NK-DVMTA-LGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       213 t~~~i----------~~-~~l~~-mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      ...+.          .. +.+.. .+...+-|-=+.|.....+-|...|+..
T Consensus        82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~  133 (450)
T PRK14106         82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNA  133 (450)
T ss_pred             CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHc
Confidence            22111          10 11122 2322333444688888888888888764

>PLN02602 lactate dehydrogenase

Probab=96.12  E-value=0.025  Score=52.97  Aligned_cols=88  Identities=17%  Similarity=0.358  Sum_probs=56.7

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCCC--------------cccc--cCHHHhhcCCCEEEEeccCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGVS--------------YPFY--ANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~~--------------~~~~--~~l~e~l~~aDiV~~~lp~~  210 (286)
                      ++|+|||.|.+|..+|-.+...+.  ++..+|...+...+              ....  .+. +.+++||+|+++.-..
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~  116 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR  116 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence            699999999999999999887665  78899987654321              0111  233 4489999999984321


Q ss_pred             h---hhh-hcc--c----HH---HHhcCCCCcEEEEcCCC
Q 043239          211 E---ETH-HMI--N----KD---VMTALGKEGVIINVGRG  237 (286)
Q Consensus       211 ~---~t~-~~i--~----~~---~l~~mk~g~ilvn~srg  237 (286)
                      .   .++ .++  |    ++   .+....|.+++|+++..
T Consensus       117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNP  156 (350)
T PLN02602        117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNP  156 (350)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence            1   122 111  1    11   22334678899999744

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=96.11  E-value=0.025  Score=50.48  Aligned_cols=122  Identities=21%  Similarity=0.211  Sum_probs=82.4

Q ss_pred             hHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccC----CC-------EEE
Q 043239          107 GADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPF----GC-------SIA  175 (286)
Q Consensus       107 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~----g~-------~V~  175 (286)
                      +|--+++.+|+.+|-                    .+++|+..+|.|+|.|..|..+|+.+...    |.       +++
T Consensus         4 TaaV~lAgll~Al~~--------------------~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~   63 (255)
T PF03949_consen    4 TAAVVLAGLLNALRV--------------------TGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIW   63 (255)
T ss_dssp             HHHHHHHHHHHHHHH--------------------HTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEE
T ss_pred             hHHHHHHHHHHHHHH--------------------hCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEE
Confidence            455677788887776                    34568999999999999999999999877    87       478


Q ss_pred             EECCCC----CCCC-------------CcccccCHHHhhcCC--CEEEEeccCChhhhhcccHHHHhcCCC---CcEEEE
Q 043239          176 YTSRKK----KPGV-------------SYPFYANVSGLAADS--DVLIVCCALTEETHHMINKDVMTALGK---EGVIIN  233 (286)
Q Consensus       176 ~~~r~~----~~~~-------------~~~~~~~l~e~l~~a--DiV~~~lp~~~~t~~~i~~~~l~~mk~---g~ilvn  233 (286)
                      .+|+..    ....             ......+|.|+++.+  |+++-+-    ...+.++++.+..|.+   .++|.=
T Consensus        64 lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S----~~~g~ft~evv~~Ma~~~erPIIF~  139 (255)
T PF03949_consen   64 LVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLS----GQGGAFTEEVVRAMAKHNERPIIFP  139 (255)
T ss_dssp             EEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECS----SSTTSS-HHHHHHCHHHSSSEEEEE
T ss_pred             EEeccceEeccCccCChhhhhhhccCcccccccCHHHHHHhcCCCEEEEec----CCCCcCCHHHHHHHhccCCCCEEEE
Confidence            787642    1110             011124899999999  9887652    1577899999999976   889999


Q ss_pred             cCCCcccCHHHHHHHHHhC
Q 043239          234 VGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       234 ~srg~~vd~~al~~al~~~  252 (286)
                      .|+...--|-.-.++.+-+
T Consensus       140 LSNPt~~aE~~peda~~~t  158 (255)
T PF03949_consen  140 LSNPTPKAECTPEDAYEWT  158 (255)
T ss_dssp             -SSSCGGSSS-HHHHHHTT
T ss_pred             CCCCCCcccCCHHHHHhhC
Confidence            9988774444444444443

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=96.09  E-value=0.072  Score=49.62  Aligned_cols=91  Identities=8%  Similarity=0.050  Sum_probs=65.7

Q ss_pred             cCCCCEEEEEcCC--hHHHHHHHHhccCCCEEEEECCCCCCCC--------------C--cccccCHHHhhcCCCEEEEe
Q 043239          145 TLGGKRVGIVGLG--SIGSEVAKRLVPFGCSIAYTSRKKKPGV--------------S--YPFYANVSGLAADSDVLIVC  206 (286)
Q Consensus       145 ~l~g~~vgIiG~G--~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------------~--~~~~~~l~e~l~~aDiV~~~  206 (286)
                      .+.|.+|+++|-+  ++..+++..+..+|+++.+..+..-...              +  +....+++++++++|+|..-
T Consensus       153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd  232 (336)
T PRK03515        153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD  232 (336)
T ss_pred             CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence            4788999999976  6899999999999999988876543211              1  22357899999999999874


Q ss_pred             c----cCC---------hhhhhcccHHHHhcC-CCCcEEEEcC
Q 043239          207 C----ALT---------EETHHMINKDVMTAL-GKEGVIINVG  235 (286)
Q Consensus       207 l----p~~---------~~t~~~i~~~~l~~m-k~g~ilvn~s  235 (286)
                      .    ...         .-....++++.++.. |++++|.-+.
T Consensus       233 ~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcL  275 (336)
T PRK03515        233 VWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCL  275 (336)
T ss_pred             CcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECCC
Confidence            1    100         002344677888874 7889888875

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=96.08  E-value=0.013  Score=55.16  Aligned_cols=58  Identities=24%  Similarity=0.380  Sum_probs=44.0

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-C-c-----cccc---CHHHhhcCCCEEEE
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-S-Y-----PFYA---NVSGLAADSDVLIV  205 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-~-~-----~~~~---~l~e~l~~aDiV~~  205 (286)
                      .++|||||.|..|+.++..++.+|++|.++++++.... . .     ..+.   .+.++++.||+|..
T Consensus         2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~   69 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY   69 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence            37899999999999999999999999999998654421 0 0     0122   36667889998754

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.07  E-value=0.0084  Score=56.26  Aligned_cols=37  Identities=24%  Similarity=0.380  Sum_probs=32.8

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRK  180 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~  180 (286)
                      ..|++++|.|+|+|.+|..+++.|...|. ++.++|..
T Consensus        24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D   61 (355)
T PRK05597         24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD   61 (355)
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46899999999999999999999999998 67777754

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=96.07  E-value=0.0041  Score=56.47  Aligned_cols=92  Identities=15%  Similarity=0.251  Sum_probs=67.9

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-------------------Ccccc----------cCH
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------------------SYPFY----------ANV  193 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------------------~~~~~----------~~l  193 (286)
                      +-...+.++.++|+|..|...+-.....|+-|..++-.....+                   ++...          .-+
T Consensus       159 agtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~  238 (356)
T COG3288         159 AGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELV  238 (356)
T ss_pred             cccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHH
Confidence            3456778899999999999999999999998888775443211                   11011          123


Q ss_pred             HHhhcCCCEEEEe--ccCChhhhhcccHHHHhcCCCCcEEEEcC
Q 043239          194 SGLAADSDVLIVC--CALTEETHHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       194 ~e~l~~aDiV~~~--lp~~~~t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      .+.+++.||||..  +|..+. ..++.+++...||||+++||.+
T Consensus       239 a~~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlA  281 (356)
T COG3288         239 AEQAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLA  281 (356)
T ss_pred             HHHhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEeh
Confidence            4567899999875  565544 4578899999999999999985

>PRK12862 malic enzyme; Reviewed

Probab=96.05  E-value=0.087  Score=54.20  Aligned_cols=119  Identities=15%  Similarity=0.171  Sum_probs=91.5

Q ss_pred             CeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCC
Q 043239           93 GILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGC  172 (286)
Q Consensus        93 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~  172 (286)
                      +|++.|.- .  .-+|=-+++.+++.+|-                    .|+.+...+|.|.|.|.-|..+|+.|...|.
T Consensus       161 ~ip~f~DD-~--~GTa~v~la~l~~a~~~--------------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~  217 (763)
T PRK12862        161 KIPVFHDD-Q--HGTAIIVAAALLNGLKL--------------------VGKDIEDVKLVASGAGAAALACLDLLVSLGV  217 (763)
T ss_pred             CCceEecC-c--ccHHHHHHHHHHHHHHH--------------------hCCChhhcEEEEEChhHHHHHHHHHHHHcCC
Confidence            68888863 2  35666778888887775                    3567889999999999999999999999898


Q ss_pred             ---EEEEECCCCC-----C--CCC-------cccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcC
Q 043239          173 ---SIAYTSRKKK-----P--GVS-------YPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       173 ---~V~~~~r~~~-----~--~~~-------~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                         +++.+|+..-     .  ...       .....+|.|+++.+|+++-+ .    +.++++++.+..|.+.+++.=+|
T Consensus       218 ~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v~iG~-s----~~g~~~~~~v~~M~~~piifals  292 (763)
T PRK12862        218 KRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGL-S----AAGVLKPEMVKKMAPRPLIFALA  292 (763)
T ss_pred             CcccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccCCEEEeCC
Confidence               6888885421     1  110       01235899999999988654 2    25799999999999999999999


Q ss_pred             CCcc
Q 043239          236 RGAL  239 (286)
Q Consensus       236 rg~~  239 (286)
                      ....
T Consensus       293 NP~~  296 (763)
T PRK12862        293 NPTP  296 (763)
T ss_pred             CCcc
Confidence            8774

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.04  E-value=0.0083  Score=56.61  Aligned_cols=80  Identities=16%  Similarity=0.194  Sum_probs=55.4

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC------------------------------C--cc-
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV------------------------------S--YP-  188 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~------------------------------~--~~-  188 (286)
                      ...|.+.+|.|+|+|.+|..+++.|...|. ++.++|...-...                              .  .. 
T Consensus        36 q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~  115 (370)
T PRK05600         36 QERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNA  115 (370)
T ss_pred             HHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEE
Confidence            356899999999999999999999999997 7888875421100                              0  00 


Q ss_pred             -----cccCHHHhhcCCCEEEEeccCChhhhhcccHHHHh
Q 043239          189 -----FYANVSGLAADSDVLIVCCALTEETHHMINKDVMT  223 (286)
Q Consensus       189 -----~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~  223 (286)
                           ...+..++++++|+|+.|+ ++.+++.++++.-..
T Consensus       116 ~~~~i~~~~~~~~~~~~DlVid~~-Dn~~~r~~in~~~~~  154 (370)
T PRK05600        116 LRERLTAENAVELLNGVDLVLDGS-DSFATKFLVADAAEI  154 (370)
T ss_pred             eeeecCHHHHHHHHhCCCEEEECC-CCHHHHHHHHHHHHH
Confidence                 0124556788899887665 456777777654433

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=96.04  E-value=0.15  Score=47.82  Aligned_cols=91  Identities=12%  Similarity=0.173  Sum_probs=64.3

Q ss_pred             cCCCCEEEEEcCC--------hHHHHHHHHhccCCCEEEEECCCCCCCC--------------C--cccccCHHHhhcCC
Q 043239          145 TLGGKRVGIVGLG--------SIGSEVAKRLVPFGCSIAYTSRKKKPGV--------------S--YPFYANVSGLAADS  200 (286)
Q Consensus       145 ~l~g~~vgIiG~G--------~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------------~--~~~~~~l~e~l~~a  200 (286)
                      .+.|++|+|+|.|        ++.++++..+..+|++|.+..+..-...              +  +....+++++++++
T Consensus       167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a  246 (357)
T TIGR03316       167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA  246 (357)
T ss_pred             ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            3789999999853        4557888889999999998887542211              1  12357899999999


Q ss_pred             CEEEEec----c----------CCh-----------------hhhhcccHHHHhcCC-CCcEEEEcC
Q 043239          201 DVLIVCC----A----------LTE-----------------ETHHMINKDVMTALG-KEGVIINVG  235 (286)
Q Consensus       201 DiV~~~l----p----------~~~-----------------~t~~~i~~~~l~~mk-~g~ilvn~s  235 (286)
                      |+|..-.    .          ..+                 -....++++.++.+| ++++|.-+.
T Consensus       247 Dvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~vt~e~l~~a~~~~~i~MHcL  313 (357)
T TIGR03316       247 DIVYPKSWAPIAAMEKRTELYTGSDTEGAELLEQELLSQNKKHKDWVCTEERMALTHDGEALYMHCL  313 (357)
T ss_pred             CEEEECCeeccccccccchhcccchhhhhhhhhccchhHHHHhcCCeECHHHHHhcCCCCcEEECCC
Confidence            9997752    1          000                 013346888888888 888888884

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>PRK10637 cysG siroheme synthase; Provisional

Probab=96.02  E-value=0.0092  Score=57.88  Aligned_cols=71  Identities=15%  Similarity=0.119  Sum_probs=50.9

Q ss_pred             CCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------C-cc--cccCHHHhhcCCCEEEEeccCC
Q 043239          140 YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------S-YP--FYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       140 ~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~-~~--~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      ++..-++.|++|.|||.|.++..=++.|..+|++|+++++.-.+..      + ..  .-.=..+.+..+++|+.++.+.
T Consensus         4 ~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~   83 (457)
T PRK10637          4 LPIFCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDD   83 (457)
T ss_pred             eceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCH
Confidence            3556689999999999999999999999999999999987543321      0 00  0001134568899888886543

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.97  E-value=0.018  Score=53.77  Aligned_cols=37  Identities=32%  Similarity=0.503  Sum_probs=33.7

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRK  180 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~  180 (286)
                      ..|..++|.|+|+|.+|..+|+.|...|. ++..+|..
T Consensus        20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46899999999999999999999999998 88888875

>PRK06270 homoserine dehydrogenase; Provisional

Probab=95.97  E-value=0.041  Score=51.34  Aligned_cols=107  Identities=17%  Similarity=0.223  Sum_probs=63.2

Q ss_pred             CEEEEEcCChHHHHHHHHhccC----------CCEEE-EECCCCC-------CC---------CC-cc------cccCHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF----------GCSIA-YTSRKKK-------PG---------VS-YP------FYANVS  194 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~----------g~~V~-~~~r~~~-------~~---------~~-~~------~~~~l~  194 (286)
                      .+|+|+|+|.||+.+++.+...          +++|. +.|++..       ..         .+ ..      ...+++
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL   82 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence            4899999999999999998754          46655 4554321       00         00 00      123778


Q ss_pred             Hhhc--CCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHhCCee
Q 043239          195 GLAA--DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGAL-IDEKELVHFLVRGSLV  255 (286)
Q Consensus       195 e~l~--~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~-vd~~al~~al~~~~i~  255 (286)
                      +++.  +.|+|+.|+|....+...-..-....|+.|.-+|-...+.+ ...+.|.+..++.+..
T Consensus        83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~  146 (341)
T PRK06270         83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVR  146 (341)
T ss_pred             HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCE
Confidence            8874  68999999885433211111223445667766665433332 2456777777665543

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=95.92  E-value=0.073  Score=46.96  Aligned_cols=121  Identities=20%  Similarity=0.182  Sum_probs=72.4

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-------------C-----------------cc-----
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-------------S-----------------YP-----  188 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-------------~-----------------~~-----  188 (286)
                      .|.+++|.|+|+|.+|..+++.|...|. +++.+|...-...             +                 ..     
T Consensus         8 ~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~   87 (231)
T cd00755           8 KLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE   87 (231)
T ss_pred             HHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence            4788999999999999999999999898 7777774321100             0                 00     


Q ss_pred             ---cccCHHHhh-cCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC-----------------HHHHHH
Q 043239          189 ---FYANVSGLA-ADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALID-----------------EKELVH  247 (286)
Q Consensus       189 ---~~~~l~e~l-~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd-----------------~~al~~  247 (286)
                         ...+..+++ .+.|+|+.|+- +...+..+++....+  .-.+|...+-|.-.|                 .+.+-+
T Consensus        88 ~~i~~~~~~~l~~~~~D~VvdaiD-~~~~k~~L~~~c~~~--~ip~I~s~g~g~~~dp~~i~i~di~~t~~~pla~~~R~  164 (231)
T cd00755          88 EFLTPDNSEDLLGGDPDFVVDAID-SIRAKVALIAYCRKR--KIPVISSMGAGGKLDPTRIRVADISKTSGDPLARKVRK  164 (231)
T ss_pred             eecCHhHHHHHhcCCCCEEEEcCC-CHHHHHHHHHHHHHh--CCCEEEEeCCcCCCCCCeEEEccEeccccCcHHHHHHH
Confidence               012345555 36899988864 334443333322221  123444455554333                 345667


Q ss_pred             HHHhCCeeEEEeeccCCCCCC
Q 043239          248 FLVRGSLVELVLMCLRTSLMC  268 (286)
Q Consensus       248 al~~~~i~ga~lDv~~~e~~~  268 (286)
                      .|++.++..-.-=||..|++.
T Consensus       165 ~Lrk~~~~~~~~~v~S~E~~~  185 (231)
T cd00755         165 RLRKRGIFFGVPVVYSTEPPD  185 (231)
T ss_pred             HHHHcCCCCCeEEEeCCCCCC
Confidence            888888862234467777543

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=95.89  E-value=0.018  Score=60.88  Aligned_cols=64  Identities=19%  Similarity=0.197  Sum_probs=45.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccC-CCE-------------EEEECCCCCCCC-------Cc---cc-ccCHHH---hhc
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPF-GCS-------------IAYTSRKKKPGV-------SY---PF-YANVSG---LAA  198 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~-g~~-------------V~~~~r~~~~~~-------~~---~~-~~~l~e---~l~  198 (286)
                      ..++|+|||.|.||+..|+.|... +.+             |.+.|++.+...       +.   .. +.+.++   +++
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~  647 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS  647 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence            467999999999999999999764 233             788887764321       11   11 334444   457


Q ss_pred             CCCEEEEeccCC
Q 043239          199 DSDVLIVCCALT  210 (286)
Q Consensus       199 ~aDiV~~~lp~~  210 (286)
                      ++|+|++|+|..
T Consensus       648 ~~DaVIsalP~~  659 (1042)
T PLN02819        648 QVDVVISLLPAS  659 (1042)
T ss_pred             CCCEEEECCCch
Confidence            899999999963

>PRK07411 hypothetical protein; Validated

Probab=95.88  E-value=0.019  Score=54.61  Aligned_cols=37  Identities=24%  Similarity=0.297  Sum_probs=32.6

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRK  180 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~  180 (286)
                      ..|+..+|.|+|+|.+|..+|+.|...|. ++..+|..
T Consensus        34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D   71 (390)
T PRK07411         34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD   71 (390)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            46899999999999999999999999998 67777753

>PRK06153 hypothetical protein; Provisional

Probab=95.87  E-value=0.021  Score=53.82  Aligned_cols=35  Identities=29%  Similarity=0.461  Sum_probs=31.9

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECC
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSR  179 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r  179 (286)
                      .|++++|+|||+|..|..++..|...|. ++..+|.
T Consensus       173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~  208 (393)
T PRK06153        173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDG  208 (393)
T ss_pred             HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence            6899999999999999999999999998 7887774

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.85  E-value=0.078  Score=50.97  Aligned_cols=108  Identities=17%  Similarity=0.156  Sum_probs=67.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC---------Ccccc--cCHHHhhcC-CCEEEEec--cCC-
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV---------SYPFY--ANVSGLAAD-SDVLIVCC--ALT-  210 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~---------~~~~~--~~l~e~l~~-aDiV~~~l--p~~-  210 (286)
                      +.|+++.|+|.|.+|.++|+.|...|++|+++|++.....         +....  ....+++.. .|+|+..-  |.+ 
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~   82 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTN   82 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCC
Confidence            6789999999999999999999999999999987643211         11111  122344444 89887753  222 


Q ss_pred             hh-------hhhcccHH-HHhcC-CCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 043239          211 EE-------THHMINKD-VMTAL-GKEGVIINVGRGALIDEKELVHFLVRGS  253 (286)
Q Consensus       211 ~~-------t~~~i~~~-~l~~m-k~g~ilvn~srg~~vd~~al~~al~~~~  253 (286)
                      +.       ...++.+. .+..+ +...+-|-=+.|......-+...|+...
T Consensus        83 ~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g  134 (447)
T PRK02472         83 PMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGG  134 (447)
T ss_pred             HHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCC
Confidence            11       01223222 22233 3234445556888888888888887643

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=95.83  E-value=0.036  Score=46.62  Aligned_cols=32  Identities=31%  Similarity=0.519  Sum_probs=28.0

Q ss_pred             EEEEEcCChHHHHHHHHhccCCC-EEEEECCCC
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKK  181 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~  181 (286)
                      +|+|+|+|.+|..+++.|...|. ++..+|...
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            58999999999999999999998 588887654

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.83  E-value=0.0094  Score=59.82  Aligned_cols=84  Identities=18%  Similarity=0.274  Sum_probs=57.8

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc-------cccCHHHh-hcCCCEEEEeccCChhhh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP-------FYANVSGL-AADSDVLIVCCALTEETH  214 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~-------~~~~l~e~-l~~aDiV~~~lp~~~~t~  214 (286)
                      ..++.|+|+|++|+.+++.|...|.++++.|.+++...     +..       ..+.++++ +.+||.+++++++.+.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~  479 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM  479 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence            45799999999999999999999999999998776432     111       11223332 678999999998766555


Q ss_pred             hcccHHHHhcCCCCcEEEE
Q 043239          215 HMINKDVMTALGKEGVIIN  233 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn  233 (286)
                      .++  ....++.|...++-
T Consensus       480 ~i~--~~~r~~~p~~~Iia  496 (601)
T PRK03659        480 KIV--ELCQQHFPHLHILA  496 (601)
T ss_pred             HHH--HHHHHHCCCCeEEE
Confidence            443  23444555555543

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.83  E-value=0.019  Score=49.37  Aligned_cols=37  Identities=32%  Similarity=0.537  Sum_probs=33.0

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRK  180 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~  180 (286)
                      +.|.+++|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus        17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            46899999999999999999999999998 58888754

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK15076 alpha-galactosidase; Provisional

Probab=95.80  E-value=0.012  Score=56.68  Aligned_cols=109  Identities=11%  Similarity=0.044  Sum_probs=68.3

Q ss_pred             CEEEEEcCChHHHHHHH--Hh---ccC-CCEEEEECCCCCCCC-------------C----cccccCHHHhhcCCCEEEE
Q 043239          149 KRVGIVGLGSIGSEVAK--RL---VPF-GCSIAYTSRKKKPGV-------------S----YPFYANVSGLAADSDVLIV  205 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~--~l---~~~-g~~V~~~~r~~~~~~-------------~----~~~~~~l~e~l~~aDiV~~  205 (286)
                      ++|+|||.|.+|...+-  .+   .++ +.+|+.+|...+...             +    .....++.+.+++||+|+.
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~   81 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN   81 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence            58999999999955443  22   222 558999998765422             1    1124577899999999999


Q ss_pred             eccCChhh-h------------------hc----------cc----HH---HHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 043239          206 CCALTEET-H------------------HM----------IN----KD---VMTALGKEGVIINVGRGALIDEKELVHFL  249 (286)
Q Consensus       206 ~lp~~~~t-~------------------~~----------i~----~~---~l~~mk~g~ilvn~srg~~vd~~al~~al  249 (286)
                      ++-..... .                  ..          -+    .+   .+....|++++||.+...-+-+.++. .+
T Consensus        82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~-~~  160 (431)
T PRK15076         82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN-RY  160 (431)
T ss_pred             eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh-cC
Confidence            86643111 1                  00          00    11   22334689999999988766666666 33


Q ss_pred             HhCCeeEEE
Q 043239          250 VRGSLVELV  258 (286)
Q Consensus       250 ~~~~i~ga~  258 (286)
                      ...++.|.+
T Consensus       161 ~~~rviG~c  169 (431)
T PRK15076        161 PGIKTVGLC  169 (431)
T ss_pred             CCCCEEEEC
Confidence            445666654

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=95.77  E-value=0.055  Score=51.89  Aligned_cols=91  Identities=18%  Similarity=0.203  Sum_probs=67.1

Q ss_pred             cCCCCEEEEEcC---ChHHHHHHHHhccC-CCEEEEECCCCCCCC----------C--cccccCHHHhhcCCCEEEEecc
Q 043239          145 TLGGKRVGIVGL---GSIGSEVAKRLVPF-GCSIAYTSRKKKPGV----------S--YPFYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       145 ~l~g~~vgIiG~---G~iG~~~A~~l~~~-g~~V~~~~r~~~~~~----------~--~~~~~~l~e~l~~aDiV~~~lp  208 (286)
                      .+.|++|+++|-   +++..+++..+..+ |++|.+..+..-...          +  +....+++++++++|+|....-
T Consensus       238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~  317 (429)
T PRK11891        238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRI  317 (429)
T ss_pred             CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence            478999999998   58999999998876 999988876543211          1  2235899999999999987442


Q ss_pred             CCh----h------hhhcccHHHHhc-CCCCcEEEEcC
Q 043239          209 LTE----E------THHMINKDVMTA-LGKEGVIINVG  235 (286)
Q Consensus       209 ~~~----~------t~~~i~~~~l~~-mk~g~ilvn~s  235 (286)
                      ..+    .      ....++++.++. .|++++|.-+.
T Consensus       318 q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHcL  355 (429)
T PRK11891        318 QKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHPL  355 (429)
T ss_pred             hhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECCC
Confidence            100    0      124568888888 89999988774

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=95.75  E-value=0.043  Score=50.55  Aligned_cols=77  Identities=19%  Similarity=0.249  Sum_probs=51.9

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCCC-EEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCC
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALG  226 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk  226 (286)
                      .+|+|+| .|-.|+.+.+.|..... ++.....+.....     .+.++.++++|++++|+|.. ....+. .+.   .+
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~~-----~~~~~~~~~~DvvFlalp~~-~s~~~~-~~~---~~   72 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKDA-----AARRELLNAADVAILCLPDD-AAREAV-ALI---DN   72 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCcc-----cCchhhhcCCCEEEECCCHH-HHHHHH-HHH---Hh
Confidence            5899999 79999999999998754 5554433322211     23345678899999999854 222222 122   25


Q ss_pred             CCcEEEEcC
Q 043239          227 KEGVIINVG  235 (286)
Q Consensus       227 ~g~ilvn~s  235 (286)
                      .|..+||.|
T Consensus        73 ~g~~VIDlS   81 (313)
T PRK11863         73 PATRVIDAS   81 (313)
T ss_pred             CCCEEEECC
Confidence            688999998

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.75  E-value=0.01  Score=58.92  Aligned_cols=82  Identities=13%  Similarity=0.109  Sum_probs=55.2

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc-------cccCHHHh-hcCCCEEEEeccCChhhhh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP-------FYANVSGL-AADSDVLIVCCALTEETHH  215 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~-------~~~~l~e~-l~~aDiV~~~lp~~~~t~~  215 (286)
                      -++.|+|+|++|+.+|+.|+..|++|++.|.+++...     +..       ..+.++++ ++++|.+++++++..++..
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~  497 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE  497 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence            5789999999999999999999999999998765432     111       11122222 5789999999887666554


Q ss_pred             cccHHHHhcCCCCcEEE
Q 043239          216 MINKDVMTALGKEGVII  232 (286)
Q Consensus       216 ~i~~~~l~~mk~g~ilv  232 (286)
                      ++.. ..+ +.+...+|
T Consensus       498 iv~~-~~~-~~~~~~ii  512 (558)
T PRK10669        498 IVAS-ARE-KRPDIEII  512 (558)
T ss_pred             HHHH-HHH-HCCCCeEE
Confidence            4432 222 34454444

>PRK12861 malic enzyme; Reviewed

Probab=95.74  E-value=0.1  Score=53.45  Aligned_cols=141  Identities=16%  Similarity=0.212  Sum_probs=100.8

Q ss_pred             ccEEEEcCCCCCcCCh---------hHHhhc-CeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCC
Q 043239           71 LEIVVGSTAGIDHVDL---------QECRRR-GILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAY  140 (286)
Q Consensus        71 Lk~i~~~~~G~d~id~---------~~~~~~-gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~  140 (286)
                      ++.+...+.|++.=|+         +.++++ .|++.|.- .  .-+|=-+++.+++.+|-                   
T Consensus       125 v~a~~~~fg~i~lED~~~p~~f~il~~~~~~~~ipvf~DD-~--qGTa~v~lA~llnal~~-------------------  182 (764)
T PRK12861        125 IAGLEPTFGGINLEDIKAPECFTVERKLRERMKIPVFHDD-Q--HGTAITVSAAFINGLKV-------------------  182 (764)
T ss_pred             HHHHHhhcCCceeeeccCchHHHHHHHHHhcCCCCeeccc-c--chHHHHHHHHHHHHHHH-------------------
Confidence            4555555555554332         223332 68888863 2  24666778888887775                   


Q ss_pred             CCcccCCCCEEEEEcCChHHHHHHHHhccCCC---EEEEECCCC-----CC--CCC-------cccccCHHHhhcCCCEE
Q 043239          141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGC---SIAYTSRKK-----KP--GVS-------YPFYANVSGLAADSDVL  203 (286)
Q Consensus       141 ~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~---~V~~~~r~~-----~~--~~~-------~~~~~~l~e~l~~aDiV  203 (286)
                       .++++...+|.|.|.|..|..+++.|...|.   +++.+|+..     ..  ...       .....+|.|+++.+|++
T Consensus       183 -~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~L~eai~~advl  261 (764)
T PRK12861        183 -VGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQETDARTLAEVIGGADVF  261 (764)
T ss_pred             -hCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcCCCCHHHHHhcCCEE
Confidence             3567889999999999999999999999998   688888543     11  110       11236899999999987


Q ss_pred             EEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 043239          204 IVCCALTEETHHMINKDVMTALGKEGVIINVGRGAL  239 (286)
Q Consensus       204 ~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~  239 (286)
                      +-+ .    ..++++++.+..|.+.+++.=.|....
T Consensus       262 iG~-S----~~g~ft~e~v~~Ma~~PIIFaLsNPtp  292 (764)
T PRK12861        262 LGL-S----AGGVLKAEMLKAMAARPLILALANPTP  292 (764)
T ss_pred             EEc-C----CCCCCCHHHHHHhccCCEEEECCCCCc
Confidence            553 3    258999999999999999999988764

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=95.73  E-value=0.092  Score=48.63  Aligned_cols=97  Identities=14%  Similarity=0.150  Sum_probs=59.3

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccCCC-------EEEEECCCCCC--CCC-------c--------ccccCHHHhhcCCCEE
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPFGC-------SIAYTSRKKKP--GVS-------Y--------PFYANVSGLAADSDVL  203 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~g~-------~V~~~~r~~~~--~~~-------~--------~~~~~l~e~l~~aDiV  203 (286)
                      ++|+|||. |.+|..+|..|...|.       ++..+|.....  ..+       .        ....+..+.+++||+|
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv   82 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA   82 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence            48999999 9999999999886655       68888884332  210       0        1113445788999999


Q ss_pred             EEeccCCh---hhhh--------cc---cHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 043239          204 IVCCALTE---ETHH--------MI---NKDVMTALGKEGVIINVGRGALIDEKELVH  247 (286)
Q Consensus       204 ~~~lp~~~---~t~~--------~i---~~~~l~~mk~g~ilvn~srg~~vd~~al~~  247 (286)
                      +++.-...   .++.        ++   .....+.-++.+++|.++  .++|.-..+-
T Consensus        83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~  138 (322)
T cd01338          83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALIA  138 (322)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHHH
Confidence            99854311   1111        11   111122223588899986  5565555443

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=95.71  E-value=0.068  Score=49.21  Aligned_cols=90  Identities=13%  Similarity=0.182  Sum_probs=66.8

Q ss_pred             CCCCEEEEEcC---ChHHHHHHHHhccCCC-EEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCC-----h
Q 043239          146 LGGKRVGIVGL---GSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALT-----E  211 (286)
Q Consensus       146 l~g~~vgIiG~---G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~-----~  211 (286)
                      +.|.+|+++|=   +++..+++..+..+|+ +|.+..+..-...     .+....+++++++++|+|...-=..     +
T Consensus       155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~~~~~~er~~~~  234 (310)
T PRK13814        155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVTLRLQKERHDNS  234 (310)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEECccccccccch
Confidence            67899999997   6999999999999999 8988876542211     1234578999999999997621100     0


Q ss_pred             h----h--hhcccHHHHhcCCCCcEEEEcC
Q 043239          212 E----T--HHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       212 ~----t--~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      .    .  ...++++.++.+|++++|.-+.
T Consensus       235 ~~~~~~~~~y~v~~~~l~~a~~~~i~mHcL  264 (310)
T PRK13814        235 VDIDAFRGSFRLTPEKLYSAKPDAIVMHPG  264 (310)
T ss_pred             hHHHHhCCCcccCHHHHHhcCCCCEEECCC
Confidence            1    1  2456788888899999998885

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.70  E-value=0.016  Score=54.72  Aligned_cols=37  Identities=27%  Similarity=0.398  Sum_probs=33.4

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRK  180 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~  180 (286)
                      ..+.+++|.|+|+|.+|..+++.|...|. ++..+|+.
T Consensus       131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            45899999999999999999999999998 68888875

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=95.68  E-value=0.027  Score=53.61  Aligned_cols=37  Identities=24%  Similarity=0.374  Sum_probs=32.6

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRK  180 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~  180 (286)
                      ..|.+.+|.|+|+|.+|..+|+.|...|. ++.++|..
T Consensus        38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D   75 (392)
T PRK07878         38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD   75 (392)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            45889999999999999999999999888 68888753

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=95.67  E-value=0.044  Score=50.90  Aligned_cols=90  Identities=16%  Similarity=0.180  Sum_probs=65.6

Q ss_pred             CCCCEEEEEcCC--hHHHHHHHHhccCCCEEEEECCCCCCCC--------------C--cccccCHHHhhcCCCEEEEec
Q 043239          146 LGGKRVGIVGLG--SIGSEVAKRLVPFGCSIAYTSRKKKPGV--------------S--YPFYANVSGLAADSDVLIVCC  207 (286)
Q Consensus       146 l~g~~vgIiG~G--~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------------~--~~~~~~l~e~l~~aDiV~~~l  207 (286)
                      +.|++|+++|-+  ++..+++..+..+|++|.+..+..-...              +  +....+++++++++|+|..-.
T Consensus       153 l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~  232 (331)
T PRK02102        153 LKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTDV  232 (331)
T ss_pred             CCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence            789999999987  7999999999999999988876543211              1  123478999999999998742


Q ss_pred             cC----C---hh-----hhhcccHHHHh-cCCCCcEEEEcC
Q 043239          208 AL----T---EE-----THHMINKDVMT-ALGKEGVIINVG  235 (286)
Q Consensus       208 p~----~---~~-----t~~~i~~~~l~-~mk~g~ilvn~s  235 (286)
                      =.    .   ++     ....++++.++ .+|++++|.-+.
T Consensus       233 w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~l  273 (331)
T PRK02102        233 WVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCL  273 (331)
T ss_pred             cccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCC
Confidence            10    0   01     23446778888 479999988774

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=95.67  E-value=0.034  Score=41.94  Aligned_cols=69  Identities=22%  Similarity=0.251  Sum_probs=45.2

Q ss_pred             CCEEEEEcCChHHHHHHHHhc-cCCCEE-EEECCCCCCCC----CcccccCHHHhhcC--CCEEEEeccCChhhhhcc
Q 043239          148 GKRVGIVGLGSIGSEVAKRLV-PFGCSI-AYTSRKKKPGV----SYPFYANVSGLAAD--SDVLIVCCALTEETHHMI  217 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~-~~g~~V-~~~~r~~~~~~----~~~~~~~l~e~l~~--aDiV~~~lp~~~~t~~~i  217 (286)
                      ..++.|+|+|+.|++++.... ..|+++ .++|.+++...    +...+.+++++.+.  .|+-++++|. +.....+
T Consensus         3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~-~~a~~~~   79 (96)
T PF02629_consen    3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPA-EAAQEVA   79 (96)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-H-HHHHHHH
T ss_pred             CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCH-HHHHHHH
Confidence            358999999999999885443 456653 46666655432    33345577777665  9999999984 3334343

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=95.64  E-value=0.055  Score=50.57  Aligned_cols=104  Identities=16%  Similarity=0.165  Sum_probs=68.2

Q ss_pred             CEEEEEcCChHHHHHHHHhccC--CCEEE-EECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCC-h-hhhhcc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF--GCSIA-YTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALT-E-ETHHMI  217 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~--g~~V~-~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~-~-~t~~~i  217 (286)
                      .+|||||. .+|+..++.++..  +++++ ++|++.++..      +...+.++++++++.|++++++|.+ + ....-+
T Consensus         4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~   82 (343)
T TIGR01761         4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSAL   82 (343)
T ss_pred             cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHH
Confidence            58999999 6899999988765  46765 5788766532      3445789999999999999998742 1 222212


Q ss_pred             cHHHHhcCCCCc-EEEEcCCCcccCHHHHHHHHHhCCeeEE
Q 043239          218 NKDVMTALGKEG-VIINVGRGALIDEKELVHFLVRGSLVEL  257 (286)
Q Consensus       218 ~~~~l~~mk~g~-ilvn~srg~~vd~~al~~al~~~~i~ga  257 (286)
                         ....|+.|. +++-=-= ..-+.++|+++.++.++...
T Consensus        83 ---a~~aL~aGkHVL~EKPl-a~~Ea~el~~~A~~~g~~l~  119 (343)
T TIGR01761        83 ---ARALLARGIHVLQEHPL-HPRDIQDLLRLAERQGRRYL  119 (343)
T ss_pred             ---HHHHHhCCCeEEEcCCC-CHHHHHHHHHHHHHcCCEEE
Confidence               233344543 3333211 24677778888888766644

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PLN02342 ornithine carbamoyltransferase

Probab=95.64  E-value=0.12  Score=48.28  Aligned_cols=90  Identities=16%  Similarity=0.115  Sum_probs=66.7

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC-------------CcccccCHHHhhcCCCEEEEec----
Q 043239          146 LGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------------SYPFYANVSGLAADSDVLIVCC----  207 (286)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------------~~~~~~~l~e~l~~aDiV~~~l----  207 (286)
                      +.|.+|+++|- .++..+++..+..+|++|.+..+..-...             .+....+++++++++|+|.+-.    
T Consensus       192 l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s~  271 (348)
T PLN02342        192 LEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWASM  271 (348)
T ss_pred             cCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCcccc
Confidence            78899999996 46888888889999999988876543211             1224578999999999998752    


Q ss_pred             cCChh--------hhhcccHHHHhcCCCCcEEEEcC
Q 043239          208 ALTEE--------THHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       208 p~~~~--------t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      -..+.        ....++++.++.+|++++|.-+.
T Consensus       272 ~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpL  307 (348)
T PLN02342        272 GQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCL  307 (348)
T ss_pred             ccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCC
Confidence            11111        12557888999999999998885

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.62  E-value=0.05  Score=47.04  Aligned_cols=38  Identities=32%  Similarity=0.516  Sum_probs=33.7

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      ++.|+++.|.|. |.+|..+++.|...|++|++.+|+.+
T Consensus         2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~   40 (238)
T PRK05786          2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN   40 (238)
T ss_pred             CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            367899999986 77999999999999999999998765

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.61  E-value=0.017  Score=50.62  Aligned_cols=69  Identities=14%  Similarity=0.132  Sum_probs=49.8

Q ss_pred             CCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-------Ccc---cccCHHHhhcCCCEEEEeccC
Q 043239          140 YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------SYP---FYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       140 ~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------~~~---~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      ++..-+++|++|.|||.|.++..=++.|..+|.+|+++++...+..       ...   ...+. +.+..+++|+.++.+
T Consensus        17 ~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~-~dl~g~~LViaATdD   95 (223)
T PRK05562         17 MFISLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDK-EFIKDKHLIVIATDD   95 (223)
T ss_pred             eeeEEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCCh-HHhCCCcEEEECCCC
Confidence            3445678899999999999999999999999999999988654321       110   01122 345788888888653

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.60  E-value=0.016  Score=56.66  Aligned_cols=107  Identities=15%  Similarity=0.145  Sum_probs=66.9

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccccc--cCHHHhhcCCCEEEEeccCChhhhh---
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFY--ANVSGLAADSDVLIVCCALTEETHH---  215 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~--~~l~e~l~~aDiV~~~lp~~~~t~~---  215 (286)
                      +.|+++.|+|+|..|.+.++.|+..|++|+++|+......     +....  ....+.++++|+|+.+-. -+....   
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpG-i~~~~p~~~   88 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPG-FRPTAPVLA   88 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCC-CCCCCHHHH
Confidence            4688999999999999999999999999999996543211     22111  123355678998887632 222111   


Q ss_pred             --------cccHHHH--hcCC------C-CcEEEEcCCCcccCHHHHHHHHHhCC
Q 043239          216 --------MINKDVM--TALG------K-EGVIINVGRGALIDEKELVHFLVRGS  253 (286)
Q Consensus       216 --------~i~~~~l--~~mk------~-g~ilvn~srg~~vd~~al~~al~~~~  253 (286)
                              ++.+-.+  ..++      + ..+=|-=+.|......-+...|+...
T Consensus        89 ~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g  143 (488)
T PRK03369         89 AAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAG  143 (488)
T ss_pred             HHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence                    2222222  1111      2 23334446888888888888887643

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=95.58  E-value=0.057  Score=45.82  Aligned_cols=62  Identities=18%  Similarity=0.221  Sum_probs=48.8

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCCC---c-------ccccCHHHhhcCCCEEEEeccCC
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS---Y-------PFYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~---~-------~~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      ++|+||| -|.+|+.+++-+...|++|+..-|++.+...   .       ....++.+.+..-|+|+.+....
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~   73 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG   73 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence            5899999 5999999999999999999999888876531   1       11244557889999999886543

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.54  E-value=0.16  Score=40.93  Aligned_cols=32  Identities=41%  Similarity=0.578  Sum_probs=28.5

Q ss_pred             EEEEEcCChHHHHHHHHhccCCC-EEEEECCCC
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKK  181 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~  181 (286)
                      +|.|+|+|.+|..+++.|...|. ++..+|...
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            58999999999999999999998 788888653

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.51  E-value=0.027  Score=54.13  Aligned_cols=87  Identities=26%  Similarity=0.237  Sum_probs=56.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-------Cccc-------ccCHHH-hhcCCCEEEEeccCC
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------SYPF-------YANVSG-LAADSDVLIVCCALT  210 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------~~~~-------~~~l~e-~l~~aDiV~~~lp~~  210 (286)
                      ...+++.|+|+|.+|+.+++.|...|.+|++.+++++...       +...       ...|++ -+.++|.|+++.+..
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~  308 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD  308 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence            4578899999999999999999999999999988765311       1110       112222 357899998888755


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEc
Q 043239          211 EETHHMINKDVMTALGKEGVIINV  234 (286)
Q Consensus       211 ~~t~~~i~~~~l~~mk~g~ilvn~  234 (286)
                      ..+  ++.......+.+..+++-+
T Consensus       309 ~~n--~~~~~~~~~~~~~~ii~~~  330 (453)
T PRK09496        309 EAN--ILSSLLAKRLGAKKVIALV  330 (453)
T ss_pred             HHH--HHHHHHHHHhCCCeEEEEE
Confidence            332  2223333445555555533

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=95.49  E-value=0.037  Score=50.00  Aligned_cols=101  Identities=17%  Similarity=0.219  Sum_probs=64.6

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCCCcc--cccCHH-Hh-hcCCCEEEEeccCChhh-----hhcc
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVSYP--FYANVS-GL-AADSDVLIVCCALTEET-----HHMI  217 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~~~~--~~~~l~-e~-l~~aDiV~~~lp~~~~t-----~~~i  217 (286)
                      ++++.|+|.|..+++++..|...|+ +|++++|+.++.....  ...+.. ++ ...+|+||.+.|..-..     ...+
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~~~~~~dlvINaTp~Gm~~~~~~~~~pi  201 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDLGGIEADILVNVTPIGMAGGPEADKLAF  201 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhcccccCCEEEECCccccCCCCccccCCC
Confidence            4689999999999999999999998 6999999876543110  001111 11 24689999999854211     0113


Q ss_pred             cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          218 NKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       218 ~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      +.   ..++++.+++|+--.. .++.=|..|-+.|
T Consensus       202 ~~---~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G  232 (272)
T PRK12550        202 PE---AEIDAASVVFDVVALP-AETPLIRYARARG  232 (272)
T ss_pred             CH---HHcCCCCEEEEeecCC-ccCHHHHHHHHCc
Confidence            32   3467888999997654 3444444444433

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=95.49  E-value=0.051  Score=49.76  Aligned_cols=83  Identities=14%  Similarity=0.214  Sum_probs=54.3

Q ss_pred             CCEEEEEcCChHHHHHHHHhcc-CCCEEE-EECCCCCCC-------CCccc-ccCHHHhhc-----CCCEEEEeccCChh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVP-FGCSIA-YTSRKKKPG-------VSYPF-YANVSGLAA-----DSDVLIVCCALTEE  212 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~-~g~~V~-~~~r~~~~~-------~~~~~-~~~l~e~l~-----~aDiV~~~lp~~~~  212 (286)
                      ..++||||.|+||+..+..+.. -++++. +++++++..       .+... +.+.+++++     +.|+|+.+.|....
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H   83 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH   83 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence            4689999999999997776664 356765 566655421       13332 467888884     58889999874321


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcC
Q 043239          213 THHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       213 t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      .     +......+.|..+||-+
T Consensus        84 ~-----e~a~~a~eaGk~VID~s  101 (302)
T PRK08300         84 V-----RHAAKLREAGIRAIDLT  101 (302)
T ss_pred             H-----HHHHHHHHcCCeEEECC
Confidence            1     12223356788888876

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=95.49  E-value=0.17  Score=46.26  Aligned_cols=109  Identities=15%  Similarity=0.231  Sum_probs=73.7

Q ss_pred             CCEEEEEcC-ChHHHHHHHHhccCCCE-EEEECCC--CCCCCCcccccCHHHhhcC--CCEEEEeccCChhhhhcccHHH
Q 043239          148 GKRVGIVGL-GSIGSEVAKRLVPFGCS-IAYTSRK--KKPGVSYPFYANVSGLAAD--SDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       148 g~~vgIiG~-G~iG~~~A~~l~~~g~~-V~~~~r~--~~~~~~~~~~~~l~e~l~~--aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      ..+|.|.|. |.+|..+.+.|..+|++ ++.+++.  .....+...+.++.++-..  .|+.++++|. +.+...+. +.
T Consensus         8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~-~~v~~~l~-e~   85 (291)
T PRK05678          8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPP-PFAADAIL-EA   85 (291)
T ss_pred             CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCH-HHHHHHHH-HH
Confidence            457888896 88999999999998885 4456776  4455577778899998886  8999999993 34444442 22


Q ss_pred             HhcCC-CCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEee
Q 043239          222 MTALG-KEGVIINVGRGALIDEKELVHFLVRGSLVELVLM  260 (286)
Q Consensus       222 l~~mk-~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lD  260 (286)
                      .. .. +.++++..+. ..-+++.|.+..+++.++-.+=.
T Consensus        86 ~~-~gvk~avI~s~Gf-~~~~~~~l~~~a~~~girvlGPN  123 (291)
T PRK05678         86 ID-AGIDLIVCITEGI-PVLDMLEVKAYLERKKTRLIGPN  123 (291)
T ss_pred             HH-CCCCEEEEECCCC-CHHHHHHHHHHHHHcCCEEECCC
Confidence            22 22 2334443333 33444589999998887755433

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=95.48  E-value=0.042  Score=44.98  Aligned_cols=86  Identities=16%  Similarity=0.161  Sum_probs=55.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCC---cccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS---YPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM  222 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~---~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l  222 (286)
                      ..|++|++||+=   +++++.|+..+.++.++++++.....   .......++++++||+|++.-.  .-..+-+ .+.+
T Consensus         9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGs--TlvN~Ti-~~iL   82 (147)
T PF04016_consen    9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGS--TLVNGTI-DDIL   82 (147)
T ss_dssp             TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECH--HCCTTTH-HHHH
T ss_pred             cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEee--eeecCCH-HHHH
Confidence            468999999972   23788888888999999998854322   1134567789999999987621  1111222 3567


Q ss_pred             hcCCCCcEEEEcCCC
Q 043239          223 TALGKEGVIINVGRG  237 (286)
Q Consensus       223 ~~mk~g~ilvn~srg  237 (286)
                      ++.+++..++=.|-.
T Consensus        83 ~~~~~~~~vil~GpS   97 (147)
T PF04016_consen   83 ELARNAREVILYGPS   97 (147)
T ss_dssp             HHTTTSSEEEEESCC
T ss_pred             HhCccCCeEEEEecC
Confidence            777777766666543

; PDB: 3L5O_B 3NPG_A.

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.46  E-value=0.089  Score=50.90  Aligned_cols=109  Identities=17%  Similarity=0.198  Sum_probs=66.9

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEe--ccCC-h----h
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVC--CALT-E----E  212 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~--lp~~-~----~  212 (286)
                      ++.|++|.|+|+|..|.++|+.|...|++|.++|.......     +......-.+-+.++|+|+..  +|.+ +    .
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~   85 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV   85 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence            36789999999999999999999999999999996543211     221111011235679988764  2211 1    1


Q ss_pred             h---hh----cccH-HHHhc-C-----CCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 043239          213 T---HH----MINK-DVMTA-L-----GKEGVIINVGRGALIDEKELVHFLVRGS  253 (286)
Q Consensus       213 t---~~----~i~~-~~l~~-m-----k~g~ilvn~srg~~vd~~al~~al~~~~  253 (286)
                      .   +.    ++.+ +.+.. +     +...+-|-=+.|......-+...|+...
T Consensus        86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g  140 (460)
T PRK01390         86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAG  140 (460)
T ss_pred             HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence            1   11    1222 22222 2     2234455557899888888888888643

>CHL00194 ycf39 Ycf39; Provisional

Probab=95.45  E-value=0.023  Score=51.98  Aligned_cols=60  Identities=10%  Similarity=0.217  Sum_probs=45.4

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cc-------ccccCHHHhhcCCCEEEEecc
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SY-------PFYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~-------~~~~~l~e~l~~aDiV~~~lp  208 (286)
                      ++|.|.| .|.+|+.+++.|...|++|.+.+|+.++..     +.       ....++.++++.+|+|+.+.+
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~   73 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST   73 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence            4789999 699999999999999999999888754321     11       122456778999999887644

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.45  E-value=0.033  Score=54.55  Aligned_cols=110  Identities=16%  Similarity=0.173  Sum_probs=68.2

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC---------Ccccc--cCHHHhhcCCCEEEEe--ccCC--
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV---------SYPFY--ANVSGLAADSDVLIVC--CALT--  210 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~---------~~~~~--~~l~e~l~~aDiV~~~--lp~~--  210 (286)
                      +.+++|.|+|+|..|.++|+.|+..|++|.++|.......         +....  ....+.+.++|+|+..  +|.+  
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~   84 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEA   84 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCccc
Confidence            5688999999999999999999999999999996543211         11110  1123456689999886  4432  


Q ss_pred             ---hh-------hhhcccH-HHH-hcC--------CCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          211 ---EE-------THHMINK-DVM-TAL--------GKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       211 ---~~-------t~~~i~~-~~l-~~m--------k~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                         +.       ...++.+ +.+ ..+        ++..+-|-=+.|......-+...|+.....
T Consensus        85 ~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~  149 (498)
T PRK02006         85 ALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKK  149 (498)
T ss_pred             ccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence               11       1122222 121 112        122344444688888888888888775544

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=95.44  E-value=0.11  Score=47.90  Aligned_cols=59  Identities=27%  Similarity=0.348  Sum_probs=43.0

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccCCC--EEEEECCCC--CCCC-------------C--ccc--ccCHHHhhcCCCEEEEe
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPFGC--SIAYTSRKK--KPGV-------------S--YPF--YANVSGLAADSDVLIVC  206 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~g~--~V~~~~r~~--~~~~-------------~--~~~--~~~l~e~l~~aDiV~~~  206 (286)
                      ++|+|+|. |.+|..++..|...|.  +|..+|+..  +...             +  ...  ..+. +.+++||+|+++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit   79 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT   79 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence            58999997 9999999999998876  588888844  2221             0  001  1243 458999999999


Q ss_pred             cc
Q 043239          207 CA  208 (286)
Q Consensus       207 lp  208 (286)
                      ..
T Consensus        80 ag   81 (309)
T cd05294          80 AG   81 (309)
T ss_pred             cC
Confidence            75

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK07877 hypothetical protein; Provisional

Probab=95.43  E-value=0.045  Score=55.88  Aligned_cols=79  Identities=20%  Similarity=0.320  Sum_probs=56.3

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCC------C----C-------------------Cc--c--
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKP------G----V-------------------SY--P--  188 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~------~----~-------------------~~--~--  188 (286)
                      ..|++++|+|+|+| +|+.+|..|...|.  ++..+|...-.      .    .                   ..  .  
T Consensus       103 ~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~  181 (722)
T PRK07877        103 ERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF  181 (722)
T ss_pred             HHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence            45899999999999 89999999998884  67776642210      0    0                   00  0  


Q ss_pred             ----cccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhc
Q 043239          189 ----FYANVSGLAADSDVLIVCCALTEETHHMINKDVMTA  224 (286)
Q Consensus       189 ----~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~  224 (286)
                          ...+++++++++|+|+-|+ ++-+++.++++.-..+
T Consensus       182 ~~~i~~~n~~~~l~~~DlVvD~~-D~~~~R~~ln~~a~~~  220 (722)
T PRK07877        182 TDGLTEDNVDAFLDGLDVVVEEC-DSLDVKVLLREAARAR  220 (722)
T ss_pred             eccCCHHHHHHHhcCCCEEEECC-CCHHHHHHHHHHHHHc
Confidence                1246778899999998877 4667888887666554

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=95.42  E-value=0.055  Score=49.48  Aligned_cols=29  Identities=28%  Similarity=0.690  Sum_probs=25.9

Q ss_pred             EEEEEcCChHHHHHHHHhccCCC-EEEEEC
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGC-SIAYTS  178 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~  178 (286)
                      +|.|+|.|.+|..+|+.|...|. +++.+|
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD   30 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVD   30 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEC
Confidence            58999999999999999999998 677766

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=95.37  E-value=0.047  Score=51.06  Aligned_cols=84  Identities=20%  Similarity=0.271  Sum_probs=51.2

Q ss_pred             CCCEEEEEc-CChHHHHHHHHhccCCC---EEEEE-C-CCCCCCCCc--c--cccCH-HHhhcCCCEEEEeccCChhhhh
Q 043239          147 GGKRVGIVG-LGSIGSEVAKRLVPFGC---SIAYT-S-RKKKPGVSY--P--FYANV-SGLAADSDVLIVCCALTEETHH  215 (286)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~A~~l~~~g~---~V~~~-~-r~~~~~~~~--~--~~~~l-~e~l~~aDiV~~~lp~~~~t~~  215 (286)
                      ...+|+|+| .|.+|+.+.+.|...++   ++.+. + |+..+....  .  ...++ .+.+.++|+|++++|.. .+..
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~s~~   84 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGS-ISKK   84 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcH-HHHH
Confidence            356899999 69999999999998665   34333 2 232222111  0  11222 24558899999999854 2232


Q ss_pred             cccHHHHhcCCCCcEEEEcC
Q 043239          216 MINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       216 ~i~~~~l~~mk~g~ilvn~s  235 (286)
                      +.. +   ..+.|+.+||.|
T Consensus        85 ~~~-~---~~~~g~~VIDlS  100 (344)
T PLN02383         85 FGP-I---AVDKGAVVVDNS  100 (344)
T ss_pred             HHH-H---HHhCCCEEEECC
Confidence            221 1   125688999998

>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1

Probab=95.36  E-value=0.13  Score=41.47  Aligned_cols=93  Identities=17%  Similarity=0.252  Sum_probs=65.8

Q ss_pred             HHHHHhccCCCEEEEECCCCCCC---------CCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEE
Q 043239          162 EVAKRLVPFGCSIAYTSRKKKPG---------VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVII  232 (286)
Q Consensus       162 ~~A~~l~~~g~~V~~~~r~~~~~---------~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilv  232 (286)
                      ..+++|.+.|++|++=.-.....         .++....+.++++++||+|+-.-|.+        .+.+++|++|.+++
T Consensus        18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li   89 (136)
T PF05222_consen   18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLI   89 (136)
T ss_dssp             HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred             HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEE
Confidence            67788888899998754332221         13444556678999999997654432        45678899999999


Q ss_pred             EcCCCcccCHHHHHHHHHhCCeeEEEeeccCC
Q 043239          233 NVGRGALIDEKELVHFLVRGSLVELVLMCLRT  264 (286)
Q Consensus       233 n~srg~~vd~~al~~al~~~~i~ga~lDv~~~  264 (286)
                      -.....  ....+++.|.++++...++|....
T Consensus        90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr  119 (136)
T PF05222_consen   90 GFLHPA--QNKELLEALAKKGITAFALELIPR  119 (136)
T ss_dssp             EE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred             Eeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence            775444  699999999999999888888766

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.35  E-value=0.018  Score=58.00  Aligned_cols=83  Identities=19%  Similarity=0.221  Sum_probs=55.8

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc----ccC---HHH-hhcCCCEEEEeccCChhhh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF----YAN---VSG-LAADSDVLIVCCALTEETH  214 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~----~~~---l~e-~l~~aDiV~~~lp~~~~t~  214 (286)
                      ..++-|+|+|++|+.+++.|.+.|.++++.|.+++..+     +...    ..+   +++ =++++|.+++++++.+.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~  479 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL  479 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence            46899999999999999999999999999988776432     2111    122   222 2568999999987665554


Q ss_pred             hcccHHHHhcCCCCcEEE
Q 043239          215 HMINKDVMTALGKEGVII  232 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilv  232 (286)
                      .++  .....+.|...++
T Consensus       480 ~i~--~~ar~~~p~~~ii  495 (621)
T PRK03562        480 QLV--ELVKEHFPHLQII  495 (621)
T ss_pred             HHH--HHHHHhCCCCeEE
Confidence            443  2333344554443

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=95.35  E-value=0.38  Score=44.32  Aligned_cols=61  Identities=10%  Similarity=0.192  Sum_probs=48.4

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC------------C-cccccCHHHhhcCCCEEEE
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV------------S-YPFYANVSGLAADSDVLIV  205 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------------~-~~~~~~l~e~l~~aDiV~~  205 (286)
                      .+.|++|+++|- +++..+++..+..+|++|.+..+..-...            + +....+++++++++|+|.+
T Consensus       150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~  224 (311)
T PRK14804        150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYT  224 (311)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEe
Confidence            378999999997 79999999999999999998887542100            1 1225789999999999987

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.35  E-value=0.049  Score=50.68  Aligned_cols=84  Identities=15%  Similarity=0.230  Sum_probs=52.0

Q ss_pred             CCEEEEEc-CChHHHHHHHHhccCCC---EEEEECCCCCC--CCCc----ccccCHH-HhhcCCCEEEEeccCChhhhhc
Q 043239          148 GKRVGIVG-LGSIGSEVAKRLVPFGC---SIAYTSRKKKP--GVSY----PFYANVS-GLAADSDVLIVCCALTEETHHM  216 (286)
Q Consensus       148 g~~vgIiG-~G~iG~~~A~~l~~~g~---~V~~~~r~~~~--~~~~----~~~~~l~-e~l~~aDiV~~~lp~~~~t~~~  216 (286)
                      +++|+|+| .|.+|+.+.+.|...|+   ++.+..+....  ....    ....+++ +.++++|+|+.|+|.. .+..+
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g-~s~~~   79 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGS-VSKKY   79 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChH-HHHHH
Confidence            46899999 69999999999998766   34555433222  1111    1122222 3457899999999843 23322


Q ss_pred             ccHHHHhcCCCCcEEEEcCC
Q 043239          217 INKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       217 i~~~~l~~mk~g~ilvn~sr  236 (286)
                      . ..   .++.|+.+||.|.
T Consensus        80 ~-~~---~~~~G~~VIDlS~   95 (334)
T PRK14874         80 A-PK---AAAAGAVVIDNSS   95 (334)
T ss_pred             H-HH---HHhCCCEEEECCc
Confidence            2 11   2357889999874

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=95.31  E-value=0.11  Score=48.43  Aligned_cols=126  Identities=13%  Similarity=0.131  Sum_probs=82.3

Q ss_pred             HHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCC--hHHHHHHH
Q 043239           88 ECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLG--SIGSEVAK  165 (286)
Q Consensus        88 ~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G--~iG~~~A~  165 (286)
                      .+....|+|.|..+...-++  .+|+=++.+.+++                   .| .+.|++|+++|-+  ++..+++.
T Consensus       117 ~a~~s~vPVINa~~~~~HPt--QaL~Dl~Ti~e~~-------------------~g-~l~g~kia~vGD~~~~v~~Sl~~  174 (332)
T PRK04284        117 LAEYSGVPVWNGLTDEDHPT--QVLADFLTAKEHL-------------------KK-PYKDIKFTYVGDGRNNVANALMQ  174 (332)
T ss_pred             HHHhCCCCEEECCCCCCChH--HHHHHHHHHHHHh-------------------cC-CcCCcEEEEecCCCcchHHHHHH
Confidence            34556899999765433332  2333333333221                   01 3778999999975  88999999


Q ss_pred             HhccCCCEEEEECCCCCCCC--------------C--cccccCHHHhhcCCCEEEEec----cCCh----h-----hhhc
Q 043239          166 RLVPFGCSIAYTSRKKKPGV--------------S--YPFYANVSGLAADSDVLIVCC----ALTE----E-----THHM  216 (286)
Q Consensus       166 ~l~~~g~~V~~~~r~~~~~~--------------~--~~~~~~l~e~l~~aDiV~~~l----p~~~----~-----t~~~  216 (286)
                      .+..+|++|.+..+..-...              +  +....+++++++++|+|.+-.    ....    +     ....
T Consensus       175 ~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~y~  254 (332)
T PRK04284        175 GAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTDVWVSMGEPDEVWEERIKLLKPYQ  254 (332)
T ss_pred             HHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECCcccCccchhhHHHHHHhccCCc
Confidence            99999999988876532111              1  224578999999999998741    1000    0     2344


Q ss_pred             ccHHHHhcCC-CCcEEEEcC
Q 043239          217 INKDVMTALG-KEGVIINVG  235 (286)
Q Consensus       217 i~~~~l~~mk-~g~ilvn~s  235 (286)
                      ++++.++.++ ++++|.-+.
T Consensus       255 v~~e~l~~a~~~~~ivmHpl  274 (332)
T PRK04284        255 VNKEMMKKTGNPNAIFEHCL  274 (332)
T ss_pred             CCHHHHhhcCCCCcEEECCC
Confidence            6788888886 588888875

>PRK06349 homoserine dehydrogenase; Provisional

Probab=95.30  E-value=0.1  Score=50.26  Aligned_cols=103  Identities=19%  Similarity=0.285  Sum_probs=62.0

Q ss_pred             CEEEEEcCChHHHHHHHHhccC----------CCEEE-EECCCCCCCC-----CcccccCHHHhhc--CCCEEEEeccCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF----------GCSIA-YTSRKKKPGV-----SYPFYANVSGLAA--DSDVLIVCCALT  210 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~----------g~~V~-~~~r~~~~~~-----~~~~~~~l~e~l~--~aDiV~~~lp~~  210 (286)
                      .+|||+|+|.||+.+++.|...          +.+|. +++++..+..     ......++++++.  +.|+|+.+++..
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~   83 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI   83 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence            4899999999999999887542          34544 5676654432     1234568889985  469999887643


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHhCCee
Q 043239          211 EETHHMINKDVMTALGKEGVIINVGRGAL-IDEKELVHFLVRGSLV  255 (286)
Q Consensus       211 ~~t~~~i~~~~l~~mk~g~ilvn~srg~~-vd~~al~~al~~~~i~  255 (286)
                      .....+    ....|+.|.-+|-..-+-. ...+.|.++.++.+..
T Consensus        84 ~~~~~~----~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~  125 (426)
T PRK06349         84 EPAREL----ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVD  125 (426)
T ss_pred             hHHHHH----HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCc
Confidence            222211    2244556655553322222 2346777777766553

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.28  E-value=0.17  Score=44.05  Aligned_cols=111  Identities=18%  Similarity=0.123  Sum_probs=68.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc-----ccCHHHh-----hcCCCEEEEeccCCh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF-----YANVSGL-----AADSDVLIVCCALTE  211 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~-----~~~l~e~-----l~~aDiV~~~lp~~~  211 (286)
                      .|.+|.|.|.|.+|+.+++.++..|.+|.+.+++.+...     +...     ..+..+.     -...|+++.+++...
T Consensus       134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~  213 (271)
T cd05188         134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPE  213 (271)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHH
Confidence            578999999999999999999999999998887653211     1100     0111111     245899988775321


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeecc
Q 043239          212 ETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCL  262 (286)
Q Consensus       212 ~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~  262 (286)
                           .-...+..|+++..+++++..............-.+.+.-.+.+.+
T Consensus       214 -----~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (271)
T cd05188         214 -----TLAQALRLLRPGGRIVVVGGTSGGPPLDDLRRLLFKELTIIGSTGG  259 (271)
T ss_pred             -----HHHHHHHhcccCCEEEEEccCCCCCCcccHHHHHhcceEEEEeecC
Confidence                 1245677888999999987665433322222233344444444444

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=95.26  E-value=0.1  Score=51.80  Aligned_cols=64  Identities=16%  Similarity=0.275  Sum_probs=46.8

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC--------------C------cc-------cccCHHHhh
Q 043239          146 LGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV--------------S------YP-------FYANVSGLA  197 (286)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------------~------~~-------~~~~l~e~l  197 (286)
                      -.|+++.|.|. |.||+.+++.|...|++|.+..|+.+...              +      ..       ...++.+.+
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL  157 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL  157 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence            35789999985 99999999999999999998888654310              0      00       112445568


Q ss_pred             cCCCEEEEeccC
Q 043239          198 ADSDVLIVCCAL  209 (286)
Q Consensus       198 ~~aDiV~~~lp~  209 (286)
                      .++|+|+.++..
T Consensus       158 ggiDiVVn~AG~  169 (576)
T PLN03209        158 GNASVVICCIGA  169 (576)
T ss_pred             cCCCEEEEcccc
Confidence            899999888643

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=95.23  E-value=0.02  Score=48.52  Aligned_cols=62  Identities=16%  Similarity=0.165  Sum_probs=44.6

Q ss_pred             EEEEEcCChHHHHHHHH--hccCCCEEE-EECCCCCCCC----C--cccccCHHHhhc--CCCEEEEeccCCh
Q 043239          150 RVGIVGLGSIGSEVAKR--LVPFGCSIA-YTSRKKKPGV----S--YPFYANVSGLAA--DSDVLIVCCALTE  211 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~--l~~~g~~V~-~~~r~~~~~~----~--~~~~~~l~e~l~--~aDiV~~~lp~~~  211 (286)
                      ++.|||.|++|++++..  ....|+++. +||..++..-    +  ....+++++.++  +.|+.++|+|...
T Consensus        86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~  158 (211)
T COG2344          86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEH  158 (211)
T ss_pred             eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHHH
Confidence            59999999999999985  336788865 7887765321    1  223456777776  6788999999543

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=95.20  E-value=0.2  Score=45.60  Aligned_cols=109  Identities=14%  Similarity=0.172  Sum_probs=73.3

Q ss_pred             CCCEEEEEc-CChHHHHHHHHhccCCCE-EEEECCC--CCCCCCcccccCHHHhhcC--CCEEEEeccCChhhhhcccHH
Q 043239          147 GGKRVGIVG-LGSIGSEVAKRLVPFGCS-IAYTSRK--KKPGVSYPFYANVSGLAAD--SDVLIVCCALTEETHHMINKD  220 (286)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~A~~l~~~g~~-V~~~~r~--~~~~~~~~~~~~l~e~l~~--aDiV~~~lp~~~~t~~~i~~~  220 (286)
                      .+.+|.|.| .|.+|..+-+.+.+.|.+ |..+++.  .....+...+.+++|+-+.  .|+.++++|. +.+...+. +
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa-~~v~~~l~-e   82 (286)
T TIGR01019         5 KDTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPA-PFAADAIF-E   82 (286)
T ss_pred             CCCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCH-HHHHHHHH-H
Confidence            355788888 699999999999998886 3456666  4444567778899998876  6999999993 34444443 2


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEE
Q 043239          221 VMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELV  258 (286)
Q Consensus       221 ~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~  258 (286)
                      ....=-+.++++.-+-++ -+++.|.+..++..++-.+
T Consensus        83 ~~~~Gvk~avIis~Gf~e-~~~~~l~~~a~~~girilG  119 (286)
T TIGR01019        83 AIDAGIELIVCITEGIPV-HDMLKVKRYMEESGTRLIG  119 (286)
T ss_pred             HHHCCCCEEEEECCCCCH-HHHHHHHHHHHHcCCEEEC
Confidence            222111234444444444 3678899999888776543

ATP citrate lyases appear to form an outgroup.

>PRK04148 hypothetical protein; Provisional

Probab=95.16  E-value=0.026  Score=45.47  Aligned_cols=62  Identities=15%  Similarity=0.181  Sum_probs=46.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc-----cccCHHHhhcCCCEEEEeccC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP-----FYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~-----~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      +++++..||+| -|..+|+.|...|++|++.|.++....     ...     .+..--++.+.+|+|..+-|.
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp   87 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPP   87 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCC
Confidence            46799999999 899999999999999999998876422     111     122223567788888777663

>PRK07806 short chain dehydrogenase; Provisional

Probab=95.11  E-value=0.093  Score=45.72  Aligned_cols=37  Identities=32%  Similarity=0.447  Sum_probs=32.5

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCC
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      ++.++++.|.|. |.||+.+++.|...|++|++.+|+.
T Consensus         3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~   40 (248)
T PRK07806          3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK   40 (248)
T ss_pred             CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence            367899999996 9999999999999999998887754

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=95.10  E-value=0.13  Score=47.99  Aligned_cols=91  Identities=18%  Similarity=0.211  Sum_probs=63.4

Q ss_pred             cCCCCEEEEEcC---ChHHHHHHHHhcc-CCCEEEEECCCCCCCC----------C--cccccCHHHhhcCCCEEEEecc
Q 043239          145 TLGGKRVGIVGL---GSIGSEVAKRLVP-FGCSIAYTSRKKKPGV----------S--YPFYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       145 ~l~g~~vgIiG~---G~iG~~~A~~l~~-~g~~V~~~~r~~~~~~----------~--~~~~~~l~e~l~~aDiV~~~lp  208 (286)
                      .+.|.+|+++|-   +++..+++..+.. +|++|.+..+..-...          +  +....+++++++++|+|.+-.-
T Consensus       156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~~  235 (338)
T PRK08192        156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLTRI  235 (338)
T ss_pred             CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEcCc
Confidence            578999999998   5889998887664 4899988876543211          1  2235789999999999987321


Q ss_pred             CC------hh-----hhhcccHHHH-hcCCCCcEEEEcC
Q 043239          209 LT------EE-----THHMINKDVM-TALGKEGVIINVG  235 (286)
Q Consensus       209 ~~------~~-----t~~~i~~~~l-~~mk~g~ilvn~s  235 (286)
                      -.      +.     ....++++.+ ..+|++++|.-+.
T Consensus       236 q~e~~~~~~~~~~~~~~y~v~~e~l~~~a~~~ai~mHcL  274 (338)
T PRK08192        236 QEERFPSQEEANKYRGKFRLNQSIYTQHCKSNTVIMHPL  274 (338)
T ss_pred             ccccccchHHHHHhhhccccCHHHHHhhhCCCCEEECCC
Confidence            10      11     1244567777 4589999988774

>PRK13529 malate dehydrogenase; Provisional

Probab=95.04  E-value=0.33  Score=48.00  Aligned_cols=140  Identities=16%  Similarity=0.201  Sum_probs=93.1

Q ss_pred             CeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhcc---
Q 043239           93 GILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVP---  169 (286)
Q Consensus        93 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~---  169 (286)
                      .|.+.|.-=   .-+|--+++.+|+.+|-                    .|+.|...+|.|+|.|..|..+|+.+..   
T Consensus       263 ~i~~FnDDi---QGTaaV~LAgll~A~r~--------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~~~  319 (563)
T PRK13529        263 EICTFNDDI---QGTGAVTLAGLLAALKI--------------------TGEPLSDQRIVFLGAGSAGCGIADQIVAAMV  319 (563)
T ss_pred             CCCeecccc---chHHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECCCHHHHHHHHHHHHHHH
Confidence            455555321   34666777777777664                    3557889999999999999999999886   


Q ss_pred             -CCC-------EEEEECCCCC----C--CCC-----cc------------cccCHHHhhcCC--CEEEEeccCChhhhhc
Q 043239          170 -FGC-------SIAYTSRKKK----P--GVS-----YP------------FYANVSGLAADS--DVLIVCCALTEETHHM  216 (286)
Q Consensus       170 -~g~-------~V~~~~r~~~----~--~~~-----~~------------~~~~l~e~l~~a--DiV~~~lp~~~~t~~~  216 (286)
                       .|.       +++.+|+..-    .  ...     .+            ...+|.|+++.+  |+++-+-    ...+.
T Consensus       320 ~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S----~~~g~  395 (563)
T PRK13529        320 REGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVS----GQPGA  395 (563)
T ss_pred             HcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEec----CCCCC
Confidence             576       6888886531    1  000     00            114789999988  9887542    12478


Q ss_pred             ccHHHHhcCCC---CcEEEEcCCCcccCHHHHHHHHH--hC-CeeEEEe
Q 043239          217 INKDVMTALGK---EGVIINVGRGALIDEKELVHFLV--RG-SLVELVL  259 (286)
Q Consensus       217 i~~~~l~~mk~---g~ilvn~srg~~vd~~al~~al~--~~-~i~ga~l  259 (286)
                      ++++.+..|.+   .++|.=.|+....-|-.-.++.+  +| -|.+.+.
T Consensus       396 Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGs  444 (563)
T PRK13529        396 FTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGS  444 (563)
T ss_pred             CCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECC
Confidence            99999999976   78999999887643333333333  34 4544444

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=95.02  E-value=0.06  Score=53.81  Aligned_cols=65  Identities=20%  Similarity=0.267  Sum_probs=48.7

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-C----c--ccccC---HHHhhcCCCEEEEecc
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-S----Y--PFYAN---VSGLAADSDVLIVCCA  208 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-~----~--~~~~~---l~e~l~~aDiV~~~lp  208 (286)
                      .+...++|||||-|..|+.+++.++.+|++|.+++.++.... .    .  ..+.+   +.++++++|+|.....
T Consensus        18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e   92 (577)
T PLN02948         18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE   92 (577)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence            347889999999999999999999999999999988664221 0    0  11233   5566788999876544

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=95.01  E-value=0.055  Score=54.18  Aligned_cols=35  Identities=26%  Similarity=0.567  Sum_probs=31.6

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEEC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTS  178 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~  178 (286)
                      ..|++.+|.|+|+|.+|..+|+.|.+.|. +++.+|
T Consensus       334 ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD  369 (664)
T TIGR01381       334 ERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVD  369 (664)
T ss_pred             HHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEc
Confidence            56899999999999999999999999998 677766

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK05442 malate dehydrogenase; Provisional

Probab=94.98  E-value=0.23  Score=46.09  Aligned_cols=97  Identities=15%  Similarity=0.143  Sum_probs=58.4

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccCCC-------EEEEECCCCCC--CCC---------------cccccCHHHhhcCCCEE
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPFGC-------SIAYTSRKKKP--GVS---------------YPFYANVSGLAADSDVL  203 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~g~-------~V~~~~r~~~~--~~~---------------~~~~~~l~e~l~~aDiV  203 (286)
                      ++|+|||. |.+|..+|-.|...|.       ++..+|.....  ..+               .....+..+.+++||+|
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV   84 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA   84 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence            48999998 9999999998875443       68888874432  110               01123455788999999


Q ss_pred             EEeccCC--h-hhhhc-c--c----HHH----HhcCCCCcEEEEcCCCcccCHHHHHH
Q 043239          204 IVCCALT--E-ETHHM-I--N----KDV----MTALGKEGVIINVGRGALIDEKELVH  247 (286)
Q Consensus       204 ~~~lp~~--~-~t~~~-i--~----~~~----l~~mk~g~ilvn~srg~~vd~~al~~  247 (286)
                      +++.-..  + +++.- +  |    ++.    -+..++.++++.++  .++|.-..+-
T Consensus        85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t~v~  140 (326)
T PRK05442         85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNALIA  140 (326)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHHHHH
Confidence            9875421  1 11111 1  1    112    22234688999997  5565554443

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.98  E-value=0.075  Score=50.12  Aligned_cols=84  Identities=17%  Similarity=0.267  Sum_probs=60.6

Q ss_pred             CCCCEEEEEcCC----------hHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCC
Q 043239          146 LGGKRVGIVGLG----------SIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       146 l~g~~vgIiG~G----------~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      |.|++|||+|+-          .-...++++|+..|.+|.+||+......     ......++.+++++||+++++.. .
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te-w  386 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE-W  386 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc-H
Confidence            889999999975          3677899999999999999998665432     23456899999999999988753 3


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEE
Q 043239          211 EETHHMINKDVMTALGKEGVIIN  233 (286)
Q Consensus       211 ~~t~~~i~~~~l~~mk~g~ilvn  233 (286)
                      ++-+.+- -+.+ .|| +.+++|
T Consensus       387 ~ef~~~d-~~~~-~m~-~~~v~D  406 (414)
T COG1004         387 DEFRDLD-FEKL-LMK-TPVVID  406 (414)
T ss_pred             HHHhccC-hhhh-hcc-CCEEEe
Confidence            3444332 2223 454 455665

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=94.98  E-value=0.12  Score=47.54  Aligned_cols=76  Identities=21%  Similarity=0.258  Sum_probs=51.1

Q ss_pred             EEEEEc-CChHHHHHHHHhccCCC-EEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCC
Q 043239          150 RVGIVG-LGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGK  227 (286)
Q Consensus       150 ~vgIiG-~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~  227 (286)
                      +|+|+| -|-.|.++.++|...-. ++.....+..    .. ..+.+++++++|++++|+|.. .+..+. ...   .+.
T Consensus         3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~----~~-~~~~~~~~~~~D~vFlalp~~-~s~~~~-~~~---~~~   72 (310)
T TIGR01851         3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR----KD-AAERAKLLNAADVAILCLPDD-AAREAV-SLV---DNP   72 (310)
T ss_pred             eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc----cC-cCCHhHhhcCCCEEEECCCHH-HHHHHH-HHH---HhC
Confidence            799998 69999999999998643 5554432211    11 234567778999999999954 333332 112   256


Q ss_pred             CcEEEEcC
Q 043239          228 EGVIINVG  235 (286)
Q Consensus       228 g~ilvn~s  235 (286)
                      |+.+||.|
T Consensus        73 g~~VIDlS   80 (310)
T TIGR01851        73 NTCIIDAS   80 (310)
T ss_pred             CCEEEECC
Confidence            88999998

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=94.97  E-value=0.044  Score=50.43  Aligned_cols=59  Identities=19%  Similarity=0.340  Sum_probs=42.6

Q ss_pred             EEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC----------Cc------ccccCHHHhhcCCCEEEEecc
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV----------SY------PFYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~----------~~------~~~~~l~e~l~~aDiV~~~lp  208 (286)
                      +|+|||.|.+|..+|..|...+.  ++..+|...+...          .+      ....+-.+.+++||+|+++.-
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG   77 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG   77 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence            58999999999999998876665  7889998665432          00      011122467899999999754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.95  E-value=0.036  Score=53.95  Aligned_cols=110  Identities=13%  Similarity=0.162  Sum_probs=68.1

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------Cccccc--CHHHhhcCCCEEEEe--ccCC-hhh
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SYPFYA--NVSGLAADSDVLIVC--CALT-EET  213 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~~~~~--~l~e~l~~aDiV~~~--lp~~-~~t  213 (286)
                      .+.+++|.|+|+|..|.++|+.|...|++|.++|++.....      +.....  ...+.+.++|+|+..  +|.+ +..
T Consensus        12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~   91 (473)
T PRK00141         12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL   91 (473)
T ss_pred             cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence            46788999999999999999999999999999997543211      221111  123445688988776  2322 211


Q ss_pred             -------hhcccHHHHh-c------C-CCC-cEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239          214 -------HHMINKDVMT-A------L-GKE-GVIINVGRGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       214 -------~~~i~~~~l~-~------m-k~g-~ilvn~srg~~vd~~al~~al~~~~i  254 (286)
                             ..++.+-.+. .      + .+. .+-|-=+.|......-+...|+....
T Consensus        92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~  148 (473)
T PRK00141         92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGF  148 (473)
T ss_pred             HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCC
Confidence                   1122222221 1      1 122 33444468888888888888887543

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.95  E-value=0.053  Score=52.75  Aligned_cols=108  Identities=19%  Similarity=0.149  Sum_probs=67.3

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-C-------Cccc--ccCHHHhhcCCCEEEEe--ccCC-hh
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-V-------SYPF--YANVSGLAADSDVLIVC--CALT-EE  212 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-~-------~~~~--~~~l~e~l~~aDiV~~~--lp~~-~~  212 (286)
                      +.|++|+|+|+|.-|.+.|+.|...|++|+++|...... .       ....  .....+.+.++|+|+..  +|.+ +.
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~   85 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE   85 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence            468899999999999999999999999999999543221 1       0000  11113456789998776  2322 11


Q ss_pred             h-------hhcccHHH--Hhc-CC-----CCcEEEEcCCCcccCHHHHHHHHHhCC
Q 043239          213 T-------HHMINKDV--MTA-LG-----KEGVIINVGRGALIDEKELVHFLVRGS  253 (286)
Q Consensus       213 t-------~~~i~~~~--l~~-mk-----~g~ilvn~srg~~vd~~al~~al~~~~  253 (286)
                      .       ..++.+-.  +.. ++     ...+-|-=+.|......-+...|+...
T Consensus        86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g  141 (468)
T PRK04690         86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAG  141 (468)
T ss_pred             HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcC
Confidence            1       12344333  232 32     124445556888888888888887643

>PTZ00325 malate dehydrogenase; Provisional

Probab=94.95  E-value=0.084  Score=48.89  Aligned_cols=95  Identities=18%  Similarity=0.307  Sum_probs=58.1

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHhccCC--CEEEEECCCCCCC---C------Cccc--c---cCHHHhhcCCCEEEEecc
Q 043239          146 LGGKRVGIVGL-GSIGSEVAKRLVPFG--CSIAYTSRKKKPG---V------SYPF--Y---ANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~A~~l~~~g--~~V~~~~r~~~~~---~------~~~~--~---~~l~e~l~~aDiV~~~lp  208 (286)
                      ++.++|+|+|. |.+|..+|..|...+  .++..+|+.....   +      ....  .   .+..+.+++||+|++++-
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG   85 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG   85 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence            56779999999 999999999998544  4788898832211   1      1111  1   122678999999998764


Q ss_pred             CChh---h-hhccc------HHHHhcC---CCCcEEEEcCCCccc
Q 043239          209 LTEE---T-HHMIN------KDVMTAL---GKEGVIINVGRGALI  240 (286)
Q Consensus       209 ~~~~---t-~~~i~------~~~l~~m---k~g~ilvn~srg~~v  240 (286)
                      ....   + ..++.      ++..+.|   .+..+++.++.+--+
T Consensus        86 ~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv  130 (321)
T PTZ00325         86 VPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNS  130 (321)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHH
Confidence            3211   1 11111      2233333   556788888665433

>cd00704 MDH Malate dehydrogenase

Probab=94.93  E-value=0.26  Score=45.62  Aligned_cols=95  Identities=18%  Similarity=0.167  Sum_probs=58.8

Q ss_pred             EEEEEcC-ChHHHHHHHHhccCCC-------EEEEECCCC--CCCCC-------c--------ccccCHHHhhcCCCEEE
Q 043239          150 RVGIVGL-GSIGSEVAKRLVPFGC-------SIAYTSRKK--KPGVS-------Y--------PFYANVSGLAADSDVLI  204 (286)
Q Consensus       150 ~vgIiG~-G~iG~~~A~~l~~~g~-------~V~~~~r~~--~~~~~-------~--------~~~~~l~e~l~~aDiV~  204 (286)
                      +|+|+|. |.+|..+|..|...|.       ++..+|+..  +...+       .        ....+..+.+++||+|+
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV   81 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI   81 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence            7999999 9999999999886543       488888876  33221       0        01145668899999998


Q ss_pred             EeccC--Ch-hhhhc-c--c----HH---HHhcC-CCCcEEEEcCCCcccCHHHHH
Q 043239          205 VCCAL--TE-ETHHM-I--N----KD---VMTAL-GKEGVIINVGRGALIDEKELV  246 (286)
Q Consensus       205 ~~lp~--~~-~t~~~-i--~----~~---~l~~m-k~g~ilvn~srg~~vd~~al~  246 (286)
                      ++.-.  .+ +++.- +  |    ++   .+... +|.+++|.++  .++|.-+.+
T Consensus        82 itAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~  135 (323)
T cd00704          82 LVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNALI  135 (323)
T ss_pred             EeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHHH
Confidence            87432  11 11111 0  1    12   22233 5788888885  556655444

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=94.91  E-value=0.36  Score=47.92  Aligned_cols=119  Identities=20%  Similarity=0.202  Sum_probs=84.1

Q ss_pred             CeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhcc---
Q 043239           93 GILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVP---  169 (286)
Q Consensus        93 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~---  169 (286)
                      .|.+.|.-=   ..+|--+++.+|+.+|-                    .+++|...+|.|+|.|..|..+|+.+..   
T Consensus       289 ~i~~FnDDi---QGTaaV~lAgll~A~r~--------------------~g~~l~d~riv~~GAGsAgigia~ll~~~~~  345 (581)
T PLN03129        289 THLCFNDDI---QGTAAVALAGLLAALRA--------------------TGGDLADQRILFAGAGEAGTGIAELIALAMS  345 (581)
T ss_pred             CCCEecccc---chHHHHHHHHHHHHHHH--------------------hCCchhhceEEEECCCHHHHHHHHHHHHHHH
Confidence            455554321   34666777777777664                    3457899999999999999999999876   


Q ss_pred             --CCC-------EEEEECCCCC----C---CC--------CcccccCHHHhhcC--CCEEEEeccCChhhhhcccHHHHh
Q 043239          170 --FGC-------SIAYTSRKKK----P---GV--------SYPFYANVSGLAAD--SDVLIVCCALTEETHHMINKDVMT  223 (286)
Q Consensus       170 --~g~-------~V~~~~r~~~----~---~~--------~~~~~~~l~e~l~~--aDiV~~~lp~~~~t~~~i~~~~l~  223 (286)
                        .|.       +++.+|+..-    .   ..        ......+|.|+++.  .|+++-+-    ...+.++++.+.
T Consensus       346 ~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi~  421 (581)
T PLN03129        346 RQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLS----GVGGTFTKEVLE  421 (581)
T ss_pred             hhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEec----CCCCCCCHHHHH
Confidence              466       6777776431    1   11        01124589999998  89887642    124689999999


Q ss_pred             cCC---CCcEEEEcCCCc
Q 043239          224 ALG---KEGVIINVGRGA  238 (286)
Q Consensus       224 ~mk---~g~ilvn~srg~  238 (286)
                      .|.   +.++|.=.|+..
T Consensus       422 ~Ma~~~~rPIIFaLSNPt  439 (581)
T PLN03129        422 AMASLNERPIIFALSNPT  439 (581)
T ss_pred             HHHhcCCCCEEEECCCCC
Confidence            995   788999888775

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=94.91  E-value=0.16  Score=47.28  Aligned_cols=128  Identities=9%  Similarity=0.066  Sum_probs=82.6

Q ss_pred             HHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCC--hHHHHHHH
Q 043239           88 ECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLG--SIGSEVAK  165 (286)
Q Consensus        88 ~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G--~iG~~~A~  165 (286)
                      .+...+|+|.|..+...-++  .+|+=++.+.++            |       .+..+.|.+|+++|-+  ++..+++.
T Consensus       117 ~a~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~------------~-------g~~~l~gl~va~vGD~~~~v~~S~~~  175 (334)
T PRK12562        117 LAEYAGVPVWNGLTNEFHPT--QLLADLLTMQEH------------L-------PGKAFNEMTLVYAGDARNNMGNSMLE  175 (334)
T ss_pred             HHHhCCCCEEECCCCCCChH--HHHHHHHHHHHH------------h-------CCCCcCCcEEEEECCCCCCHHHHHHH
Confidence            34556899999865433332  233333332221            0       1124788999999975  79999999


Q ss_pred             HhccCCCEEEEECCCCCCC-C-------------C--cccccCHHHhhcCCCEEEEec----cCCh----h-----hhhc
Q 043239          166 RLVPFGCSIAYTSRKKKPG-V-------------S--YPFYANVSGLAADSDVLIVCC----ALTE----E-----THHM  216 (286)
Q Consensus       166 ~l~~~g~~V~~~~r~~~~~-~-------------~--~~~~~~l~e~l~~aDiV~~~l----p~~~----~-----t~~~  216 (286)
                      .+..+|++|.+..+..-.. .             +  +....+++++++++|+|.+-.    ....    +     ...-
T Consensus       176 ~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~w~sm~~~~~~~~~~~~~~~~y~  255 (334)
T PRK12562        176 AAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTDVWVSMGEPKEKWAERIALLRGYQ  255 (334)
T ss_pred             HHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCccccccchhhHHHHHHhccCCc
Confidence            9999999998887654211 0             1  223578999999999998742    1100    0     1334


Q ss_pred             ccHHHHhcC-CCCcEEEEcCC
Q 043239          217 INKDVMTAL-GKEGVIINVGR  236 (286)
Q Consensus       217 i~~~~l~~m-k~g~ilvn~sr  236 (286)
                      ++++.++.. |++++|.-+.-
T Consensus       256 v~~ell~~a~~~~~i~mHcLP  276 (334)
T PRK12562        256 VNSKMMALTGNPQVKFLHCLP  276 (334)
T ss_pred             CCHHHHHhhcCCCCEEECCCC
Confidence            677888885 78999988853

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=94.89  E-value=0.048  Score=52.84  Aligned_cols=108  Identities=18%  Similarity=0.273  Sum_probs=69.1

Q ss_pred             CCCCEEEEEcCChHHHH-HHHHhccCCCEEEEECCCCCCCC------Ccccc-cCHHHhhcCCCEEEEe--ccCC-hhhh
Q 043239          146 LGGKRVGIVGLGSIGSE-VAKRLVPFGCSIAYTSRKKKPGV------SYPFY-ANVSGLAADSDVLIVC--CALT-EETH  214 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~-~A~~l~~~g~~V~~~~r~~~~~~------~~~~~-~~l~e~l~~aDiV~~~--lp~~-~~t~  214 (286)
                      .++++|.|+|+|..|.+ +|+.|+..|++|.++|.......      +.... ..-.+.+.++|+|+..  +|.+ +...
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~   84 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV   84 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence            56789999999999999 79999999999999997653211      11111 1123445689988776  2322 2111


Q ss_pred             -------hcccHH-HHhc-CCC-CcEEEEcCCCcccCHHHHHHHHHhCC
Q 043239          215 -------HMINKD-VMTA-LGK-EGVIINVGRGALIDEKELVHFLVRGS  253 (286)
Q Consensus       215 -------~~i~~~-~l~~-mk~-g~ilvn~srg~~vd~~al~~al~~~~  253 (286)
                             .++.+- .+.. +++ ..+-|-=+.|......-+...|+...
T Consensus        85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g  133 (461)
T PRK00421         85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG  133 (461)
T ss_pred             HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence                   234332 3333 332 24455556899888888888887654

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=94.85  E-value=0.15  Score=48.33  Aligned_cols=140  Identities=21%  Similarity=0.288  Sum_probs=97.2

Q ss_pred             ccEEEEcCCCCC--cCChhHH--------hhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCC
Q 043239           71 LEIVVGSTAGID--HVDLQEC--------RRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAY  140 (286)
Q Consensus        71 Lk~i~~~~~G~d--~id~~~~--------~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~  140 (286)
                      +|.+.-...|++  .++...|        .+..|+|.|.--   .-+|=-+++.+++.+|-                   
T Consensus       135 Vkal~p~FgginLedi~ap~cf~ie~~lr~~~~IPvFhDDq---qGTaiv~lA~llnalk~-------------------  192 (432)
T COG0281         135 VKALEPTFGGINLEDIDAPRCFAIEERLRYRMNIPVFHDDQ---QGTAIVTLAALLNALKL-------------------  192 (432)
T ss_pred             HHHhhhcCCCcceeecccchhhHHHHHHhhcCCCCcccccc---cHHHHHHHHHHHHHHHH-------------------
Confidence            455566666665  3444444        233566666432   24666777788876665                   


Q ss_pred             CCcccCCCCEEEEEcCChHHHHHHHHhccCCC---EEEEECCCCCCCC--------Cccc---------ccCHHHhhcCC
Q 043239          141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGC---SIAYTSRKKKPGV--------SYPF---------YANVSGLAADS  200 (286)
Q Consensus       141 ~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~---~V~~~~r~~~~~~--------~~~~---------~~~l~e~l~~a  200 (286)
                       .|++|+..+|.+.|.|.-|-.+++.+.+.|+   +|+.+|+..--..        ....         ... ++.+..+
T Consensus       193 -~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~a  270 (432)
T COG0281         193 -TGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGA  270 (432)
T ss_pred             -hCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCC
Confidence             4677999999999999999999999999998   5888887642111        0100         011 4478889


Q ss_pred             CEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 043239          201 DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGAL  239 (286)
Q Consensus       201 DiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~  239 (286)
                      |+++-+ .    ..+.+.++.++.|.+.+++.=+|...+
T Consensus       271 dv~iG~-S----~~G~~t~e~V~~Ma~~PiIfalaNP~p  304 (432)
T COG0281         271 DVLIGV-S----GVGAFTEEMVKEMAKHPIIFALANPTP  304 (432)
T ss_pred             CEEEEc-C----CCCCcCHHHHHHhccCCEEeecCCCCc
Confidence            988665 2    238999999999999999998887764

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=94.81  E-value=0.051  Score=39.24  Aligned_cols=35  Identities=31%  Similarity=0.462  Sum_probs=32.1

Q ss_pred             EEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG  184 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~  184 (286)
                      ++.|||.|.+|-.+|..|..+|.+|+++.+++...
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            58999999999999999999999999998887665

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=94.80  E-value=0.15  Score=49.09  Aligned_cols=94  Identities=17%  Similarity=0.208  Sum_probs=61.3

Q ss_pred             cccCCCCEEEEEcC----------ChHHHHHHHHhccCCCEEEEECCCCCCCC--CcccccCHHH-hhcCCCEEEEeccC
Q 043239          143 GSTLGGKRVGIVGL----------GSIGSEVAKRLVPFGCSIAYTSRKKKPGV--SYPFYANVSG-LAADSDVLIVCCAL  209 (286)
Q Consensus       143 ~~~l~g~~vgIiG~----------G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--~~~~~~~l~e-~l~~aDiV~~~lp~  209 (286)
                      +..+.|++|+|+|+          ..-+..+++.|...|.+|.+||+......  .......+++ .++.||.|+++.. 
T Consensus       309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~-  387 (425)
T PRK15182        309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVSEVKSSHYDAIIVAVG-  387 (425)
T ss_pred             CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccchhhhhcCCCEEEEccC-
Confidence            34578999999998          46788999999999999999998633211  1001111222 4678999999875 


Q ss_pred             ChhhhhcccHH-HHhcCCCCcEEEEcCCCcc
Q 043239          210 TEETHHMINKD-VMTALGKEGVIINVGRGAL  239 (286)
Q Consensus       210 ~~~t~~~i~~~-~l~~mk~g~ilvn~srg~~  239 (286)
                      .++-+. ++-+ ....|+...+++|. |+-+
T Consensus       388 h~~f~~-~~~~~~~~~~~~~~~iiD~-r~~~  416 (425)
T PRK15182        388 HQQFKQ-MGSEDIRGFGKDKHVLYDL-KYVL  416 (425)
T ss_pred             CHHhhc-CCHHHHHHhcCCCCEEEEC-CCCC
Confidence            333333 3333 33456655688994 6554

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.79  E-value=0.053  Score=52.56  Aligned_cols=106  Identities=16%  Similarity=0.151  Sum_probs=64.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCc------ccc-cCHHHhhcCCCEEEEec--cCC-hhh---
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY------PFY-ANVSGLAADSDVLIVCC--ALT-EET---  213 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~------~~~-~~l~e~l~~aDiV~~~l--p~~-~~t---  213 (286)
                      .|++|+|+|+|.-|.+.++.|+. |++|+++|.........      ... ....+.+.++|+|+..-  |.+ +..   
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a   83 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIA   83 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHH
Confidence            47899999999999999999996 99999999543321100      000 11124567899887762  221 111   


Q ss_pred             ----hhcccHH-HH-hcCCCC-cEEEEcCCCcccCHHHHHHHHHhCC
Q 043239          214 ----HHMINKD-VM-TALGKE-GVIINVGRGALIDEKELVHFLVRGS  253 (286)
Q Consensus       214 ----~~~i~~~-~l-~~mk~g-~ilvn~srg~~vd~~al~~al~~~~  253 (286)
                          ..++.+- .+ ..+++. .+=|-=+.|......-+...|+..+
T Consensus        84 ~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g  130 (454)
T PRK01368         84 KNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNG  130 (454)
T ss_pred             HHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcC
Confidence                1133322 22 333332 3334446888888888888888744

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=94.78  E-value=0.12  Score=47.77  Aligned_cols=85  Identities=21%  Similarity=0.301  Sum_probs=59.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-----Cccc-----ccCHHHhhc---CCCEEEEeccCChh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-----SYPF-----YANVSGLAA---DSDVLIVCCALTEE  212 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-----~~~~-----~~~l~e~l~---~aDiV~~~lp~~~~  212 (286)
                      .|++|.|+|.|.+|...++.++..|. +|++.++++++..     ++..     -.++.+...   ..|+|+-+... +.
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~-~~  247 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH-PS  247 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC-HH
Confidence            58899999999999999999999998 5888887765422     2211     123334332   27999887652 11


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCC
Q 043239          213 THHMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       213 t~~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                      +   + ...++.++++..++.++.
T Consensus       248 ~---~-~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        248 S---I-NTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             H---H-HHHHHHhhcCCEEEEEcc
Confidence            1   1 356778899999999875

>PLN00106 malate dehydrogenase

Probab=94.77  E-value=0.091  Score=48.67  Aligned_cols=93  Identities=13%  Similarity=0.179  Sum_probs=58.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHhccCCC--EEEEECCCCCCC---C------Ccc-----cccCHHHhhcCCCEEEEeccC
Q 043239          147 GGKRVGIVGL-GSIGSEVAKRLVPFGC--SIAYTSRKKKPG---V------SYP-----FYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~A~~l~~~g~--~V~~~~r~~~~~---~------~~~-----~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      ...+|+|+|. |.+|..+|..|...+.  ++..+|......   +      ...     ...++.+.+++||+|+++.-.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~   96 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV   96 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence            3469999999 9999999999985554  788898765211   1      011     123457889999999887442


Q ss_pred             Ch---hhhh-cc------cHHH---HhcCCCCcEEEEcCCCcc
Q 043239          210 TE---ETHH-MI------NKDV---MTALGKEGVIINVGRGAL  239 (286)
Q Consensus       210 ~~---~t~~-~i------~~~~---l~~mk~g~ilvn~srg~~  239 (286)
                      ..   .++. ++      -++.   +....+.+++++++..--
T Consensus        97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD  139 (323)
T PLN00106         97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVN  139 (323)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            11   1111 11      1122   222357889999976653

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=94.75  E-value=0.021  Score=49.66  Aligned_cols=60  Identities=15%  Similarity=0.201  Sum_probs=46.3

Q ss_pred             EEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCC-------CCc-------ccccCHHHhhcCCCEEEEeccCC
Q 043239          151 VGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPG-------VSY-------PFYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       151 vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~-------~~~-------~~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      |.|+|. |.+|+.+++.|.+.+++|.+..|+..+.       .+.       ...+++.++++.+|.|++++|..
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~   75 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS   75 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence            678985 9999999999999999999888876421       121       12356777899999999999843

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=94.73  E-value=0.06  Score=50.18  Aligned_cols=56  Identities=23%  Similarity=0.373  Sum_probs=42.4

Q ss_pred             EEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCC--c-----ccccC---HHHhhcCCCEEEE
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS--Y-----PFYAN---VSGLAADSDVLIV  205 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~--~-----~~~~~---l~e~l~~aDiV~~  205 (286)
                      +|||||.|..|+.+++.++.+|++|.+++.++.....  .     ..+.+   +.++++.||+|..
T Consensus         1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~   66 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITF   66 (352)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEe
Confidence            5899999999999999999999999999886543220  0     11233   6667888998754

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=94.70  E-value=0.19  Score=45.28  Aligned_cols=37  Identities=24%  Similarity=0.427  Sum_probs=32.3

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRK  180 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~  180 (286)
                      ..|.+++|.|+|+|.+|..+|+.|...|. +++++|..
T Consensus        26 ~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         26 QLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             HHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            45899999999999999999999999895 77777743

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=94.70  E-value=0.073  Score=47.69  Aligned_cols=61  Identities=11%  Similarity=0.088  Sum_probs=45.0

Q ss_pred             EEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC--C-------cccccCHHHhh------cC-CCEEEEeccCC
Q 043239          150 RVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV--S-------YPFYANVSGLA------AD-SDVLIVCCALT  210 (286)
Q Consensus       150 ~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--~-------~~~~~~l~e~l------~~-aDiV~~~lp~~  210 (286)
                      +|.|.|. |.+|+.+++.|...|++|.+..|++++..  +       .....++.+++      .. +|.|+.+.|..
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~   78 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI   78 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCC
Confidence            3678876 99999999999999999999998875432  1       11234566666      45 89998887754

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=94.66  E-value=0.045  Score=50.33  Aligned_cols=65  Identities=25%  Similarity=0.361  Sum_probs=47.5

Q ss_pred             CCEEEEEcCChHH-HHHHHHhccCC--CE-EEEECCCCCCCC------Cc-ccccCHHHhhcC--CCEEEEeccCChh
Q 043239          148 GKRVGIVGLGSIG-SEVAKRLVPFG--CS-IAYTSRKKKPGV------SY-PFYANVSGLAAD--SDVLIVCCALTEE  212 (286)
Q Consensus       148 g~~vgIiG~G~iG-~~~A~~l~~~g--~~-V~~~~r~~~~~~------~~-~~~~~l~e~l~~--aDiV~~~lp~~~~  212 (286)
                      -.++||||+|.++ +..+..+...+  +. |.+++++.++..      +. ..+.+++++++.  .|+|++++|....
T Consensus         3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H   80 (342)
T COG0673           3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALH   80 (342)
T ss_pred             eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhh
Confidence            3589999999666 45888888766  35 456788876532      22 357899999986  5899999996543

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=94.60  E-value=0.51  Score=46.63  Aligned_cols=139  Identities=12%  Similarity=0.128  Sum_probs=91.9

Q ss_pred             eEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhcc----
Q 043239           94 ILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVP----  169 (286)
Q Consensus        94 I~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~----  169 (286)
                      |.+.|.--   .-+|--+++.+|+.+|-                    .+++|...+|.|+|.|..|..+|+.+..    
T Consensus       266 i~~FnDDi---QGTaaV~lAgll~Alr~--------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~  322 (559)
T PTZ00317        266 YRCFNDDI---QGTGAVIAAGFLNALKL--------------------SGVPPEEQRIVFFGAGSAAIGVANNIADLAAE  322 (559)
T ss_pred             CCEecccc---hhHHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECCCHHHHHHHHHHHHHHHH
Confidence            55555321   34666777888887764                    3456889999999999999999998873    


Q ss_pred             CCC-------EEEEECCCCC----C---CC--------Cc--cc---ccCHHHhhcCC--CEEEEeccCChhhhhcccHH
Q 043239          170 FGC-------SIAYTSRKKK----P---GV--------SY--PF---YANVSGLAADS--DVLIVCCALTEETHHMINKD  220 (286)
Q Consensus       170 ~g~-------~V~~~~r~~~----~---~~--------~~--~~---~~~l~e~l~~a--DiV~~~lp~~~~t~~~i~~~  220 (286)
                      .|.       +++.+|+..-    .   ..        ..  ..   ..+|.|+++..  |+++-+-    ...+.++++
T Consensus       323 ~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S----~~~g~Ft~e  398 (559)
T PTZ00317        323 YGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLS----GVGGVFTEE  398 (559)
T ss_pred             cCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEec----CCCCCCCHH
Confidence            576       6888875431    1   11        00  11   34899999998  9887542    124689999


Q ss_pred             HHhcCC---CCcEEEEcCCCccc---CHHHHHHHHHhCCeeEEEe
Q 043239          221 VMTALG---KEGVIINVGRGALI---DEKELVHFLVRGSLVELVL  259 (286)
Q Consensus       221 ~l~~mk---~g~ilvn~srg~~v---d~~al~~al~~~~i~ga~l  259 (286)
                      .+..|.   +..+|.=.|+....   ..++.+++=+.+-|.+.+.
T Consensus       399 vv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGs  443 (559)
T PTZ00317        399 VVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGS  443 (559)
T ss_pred             HHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECC
Confidence            999997   47899999887643   3344444333333544444

>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional

Probab=94.59  E-value=0.24  Score=48.77  Aligned_cols=91  Identities=10%  Similarity=0.050  Sum_probs=65.7

Q ss_pred             cCCCCEEEEEcC---ChHHHHHHHHhccCC-CEEEEECCCCCCCC----------C--cccccCHHHhhcCCCEE--EE-
Q 043239          145 TLGGKRVGIVGL---GSIGSEVAKRLVPFG-CSIAYTSRKKKPGV----------S--YPFYANVSGLAADSDVL--IV-  205 (286)
Q Consensus       145 ~l~g~~vgIiG~---G~iG~~~A~~l~~~g-~~V~~~~r~~~~~~----------~--~~~~~~l~e~l~~aDiV--~~-  205 (286)
                      .+.|.+|+++|-   +++..+++..+..+| ++|.+..+..-...          +  +....+++++++++|+.  +. 
T Consensus       171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw~~  250 (525)
T PRK13376        171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIWYF  250 (525)
T ss_pred             CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceEEE
Confidence            477999999998   699999999999998 89988876443211          1  22357899999999952  23 


Q ss_pred             ------eccCC-----hh--hhhcccHHHHhcCCCCcEEEEcC
Q 043239          206 ------CCALT-----EE--THHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       206 ------~lp~~-----~~--t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                            .++..     ..  -...++++.++.+|++++|.-+.
T Consensus       251 ~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL  293 (525)
T PRK13376        251 TRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL  293 (525)
T ss_pred             eccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence                  22211     01  23456888999999999998885

>PRK06392 homoserine dehydrogenase; Provisional

Probab=94.58  E-value=0.18  Score=46.72  Aligned_cols=104  Identities=14%  Similarity=0.229  Sum_probs=61.6

Q ss_pred             CEEEEEcCChHHHHHHHHhcc--------CCCEEE-EECCCCCCC--CC--------------cc--ccc--CHHHhh-c
Q 043239          149 KRVGIVGLGSIGSEVAKRLVP--------FGCSIA-YTSRKKKPG--VS--------------YP--FYA--NVSGLA-A  198 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~--------~g~~V~-~~~r~~~~~--~~--------------~~--~~~--~l~e~l-~  198 (286)
                      ++|+|+|+|.+|+.+++.|..        .+.+|+ +.+++....  .+              ..  ...  ++++++ .
T Consensus         1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~   80 (326)
T PRK06392          1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI   80 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence            379999999999999999875        456765 445443111  10              00  012  455553 4


Q ss_pred             CCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHhCC
Q 043239          199 DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALI-DEKELVHFLVRGS  253 (286)
Q Consensus       199 ~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~v-d~~al~~al~~~~  253 (286)
                      ++|+|+=|.|..++-... -.-....|+.|.-+|-.+-|.+. ....|.+..++++
T Consensus        81 ~~DVvVE~t~~~~~g~~~-~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g  135 (326)
T PRK06392         81 KPDVIVDVTPASKDGIRE-KNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNR  135 (326)
T ss_pred             CCCEEEECCCCCCcCchH-HHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcC
Confidence            689998888743211111 12234556788888887777664 4556666666554

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.55  E-value=0.1  Score=49.98  Aligned_cols=66  Identities=14%  Similarity=0.133  Sum_probs=52.1

Q ss_pred             cccCCCCEEEEEcC----------ChHHHHHHHHhccCC-CEEEEECCCCCCCC----CcccccCHHHhhcCCCEEEEec
Q 043239          143 GSTLGGKRVGIVGL----------GSIGSEVAKRLVPFG-CSIAYTSRKKKPGV----SYPFYANVSGLAADSDVLIVCC  207 (286)
Q Consensus       143 ~~~l~g~~vgIiG~----------G~iG~~~A~~l~~~g-~~V~~~~r~~~~~~----~~~~~~~l~e~l~~aDiV~~~l  207 (286)
                      +.++.|++|+|+|+          ..-...+++.|...| .+|.+||+......    ......++++.+++||+|+++.
T Consensus       315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t  394 (415)
T PRK11064        315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV  394 (415)
T ss_pred             ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence            45678999999998          457889999999996 99999998744321    1123478999999999999987


Q ss_pred             c
Q 043239          208 A  208 (286)
Q Consensus       208 p  208 (286)
                      +
T Consensus       395 ~  395 (415)
T PRK11064        395 D  395 (415)
T ss_pred             C
Confidence            6

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=94.52  E-value=0.11  Score=48.32  Aligned_cols=83  Identities=7%  Similarity=0.165  Sum_probs=51.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHhccC--CC-EEEEECCC--CCCCCCc----ccccCHHHh-hcCCCEEEEeccCChhhhh
Q 043239          147 GGKRVGIVGL-GSIGSEVAKRLVPF--GC-SIAYTSRK--KKPGVSY----PFYANVSGL-AADSDVLIVCCALTEETHH  215 (286)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~A~~l~~~--g~-~V~~~~r~--~~~~~~~----~~~~~l~e~-l~~aDiV~~~lp~~~~t~~  215 (286)
                      .+.+|+|||. |-+|+.+.+.|...  -. ++......  ..+....    ..+.++++. ++++|++++++|.. ..  
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~-~s--   79 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGRE-AS--   79 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHH-HH--
Confidence            4569999996 99999999999983  32 55544322  1111111    112344443 37899999999844 22  


Q ss_pred             cccHHHHhc-CCCCcEEEEcC
Q 043239          216 MINKDVMTA-LGKEGVIINVG  235 (286)
Q Consensus       216 ~i~~~~l~~-mk~g~ilvn~s  235 (286)
                         .+..+. .+.|+.+||.|
T Consensus        80 ---~~~~~~~~~~g~~VIDlS   97 (336)
T PRK08040         80 ---AAYAEEATNAGCLVIDSS   97 (336)
T ss_pred             ---HHHHHHHHHCCCEEEECC
Confidence               222222 25688999998

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=94.52  E-value=0.19  Score=46.41  Aligned_cols=31  Identities=39%  Similarity=0.523  Sum_probs=27.2

Q ss_pred             EEEEEcCChHHHHHHHHhccCCC-EEEEECCC
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRK  180 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~  180 (286)
                      +|.|+|+|.+|.++++.|...|. ++.++|..
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D   32 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLD   32 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCC
Confidence            58999999999999999999888 68888753

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=94.49  E-value=0.11  Score=47.11  Aligned_cols=62  Identities=19%  Similarity=0.194  Sum_probs=45.1

Q ss_pred             CCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC-------------C-------cccccCHHHhhcCCCEEEE
Q 043239          147 GGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------------S-------YPFYANVSGLAADSDVLIV  205 (286)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------------~-------~~~~~~l~e~l~~aDiV~~  205 (286)
                      .|++|.|.| .|-||+.+++.|...|++|.+..|+.....             .       .....+++++++.+|+|+.
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih   82 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH   82 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence            368999999 699999999999999999988776543210             0       0112346677888998876


Q ss_pred             ecc
Q 043239          206 CCA  208 (286)
Q Consensus       206 ~lp  208 (286)
                      +..
T Consensus        83 ~A~   85 (322)
T PLN02662         83 TAS   85 (322)
T ss_pred             eCC
Confidence            653

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=94.45  E-value=0.32  Score=45.12  Aligned_cols=93  Identities=18%  Similarity=0.188  Sum_probs=56.7

Q ss_pred             EEEEEcC-ChHHHHHHHHhccCCC-------EEEEECCCCCC--CCC-------cc--------cccCHHHhhcCCCEEE
Q 043239          150 RVGIVGL-GSIGSEVAKRLVPFGC-------SIAYTSRKKKP--GVS-------YP--------FYANVSGLAADSDVLI  204 (286)
Q Consensus       150 ~vgIiG~-G~iG~~~A~~l~~~g~-------~V~~~~r~~~~--~~~-------~~--------~~~~l~e~l~~aDiV~  204 (286)
                      +|+|+|. |.+|..+|..|...+.       ++..+|+....  ..+       ..        ...+..+.+++||+|+
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV   80 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI   80 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence            5899999 9999999999886444       48888885432  211       00        0124467899999998


Q ss_pred             EeccCCh---hhh-hcc--c----HH---HHhcC-CCCcEEEEcCCCcccCHHH
Q 043239          205 VCCALTE---ETH-HMI--N----KD---VMTAL-GKEGVIINVGRGALIDEKE  244 (286)
Q Consensus       205 ~~lp~~~---~t~-~~i--~----~~---~l~~m-k~g~ilvn~srg~~vd~~a  244 (286)
                      ++.-...   +++ .++  |    ++   .+... ++.++++.++  .++|.-.
T Consensus        81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t  132 (324)
T TIGR01758        81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA  132 (324)
T ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence            8743211   111 111  0    11   12223 4778888886  5555544

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.40  E-value=0.32  Score=46.85  Aligned_cols=109  Identities=17%  Similarity=0.292  Sum_probs=68.0

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC---------Ccccc--cCHHHhhcCCCEEEEeccCCh---
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV---------SYPFY--ANVSGLAADSDVLIVCCALTE---  211 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~---------~~~~~--~~l~e~l~~aDiV~~~lp~~~---  211 (286)
                      +.++++.|+|.|.+|.++|+.|...|++|.++|.......         +....  ...++.+.++|+|+..--..+   
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p   82 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP   82 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence            5688999999999999999999999999999987554310         11111  112234568999887632222   


Q ss_pred             hhh-------hcccH-HHH-hcCC---CCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239          212 ETH-------HMINK-DVM-TALG---KEGVIINVGRGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       212 ~t~-------~~i~~-~~l-~~mk---~g~ilvn~srg~~vd~~al~~al~~~~i  254 (286)
                      ...       .++.+ +.+ ..++   ...+-|-=+.|......-+...|+....
T Consensus        83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~  137 (445)
T PRK04308         83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGL  137 (445)
T ss_pred             HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCC
Confidence            211       12222 233 2232   1234455568888888888888876444

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=94.38  E-value=0.18  Score=46.49  Aligned_cols=91  Identities=13%  Similarity=0.244  Sum_probs=56.8

Q ss_pred             EEEEEcC-ChHHHHHHHHhccCCC--EEEEECCCCCCCC-----C----cccc-----cCHHHhhcCCCEEEEeccCCh-
Q 043239          150 RVGIVGL-GSIGSEVAKRLVPFGC--SIAYTSRKKKPGV-----S----YPFY-----ANVSGLAADSDVLIVCCALTE-  211 (286)
Q Consensus       150 ~vgIiG~-G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~-----~----~~~~-----~~l~e~l~~aDiV~~~lp~~~-  211 (286)
                      +|+|||. |.+|..+|-.|...+.  ++..+|.......     .    ....     .++.+.+++||+|+++..... 
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            5899999 9999999999876665  7888987662110     0    1111     134678999999998854321 


Q ss_pred             --hh--------hhcccH--HHHhcCCCCcEEEEcCCCcccCH
Q 043239          212 --ET--------HHMINK--DVMTALGKEGVIINVGRGALIDE  242 (286)
Q Consensus       212 --~t--------~~~i~~--~~l~~mk~g~ilvn~srg~~vd~  242 (286)
                        .+        ..++..  ..+..-.|.+++++++.  ++|.
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN--PvDv  121 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN--PVNS  121 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC--chhh
Confidence              11        111110  12223368899999954  4553

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=94.37  E-value=0.28  Score=46.65  Aligned_cols=91  Identities=11%  Similarity=0.192  Sum_probs=65.2

Q ss_pred             cCCCCEEEEEcC-----C---hHHHHHHHHhccCCCEEEEECCCCCCC-C-------------C--cccccCHHHhhcCC
Q 043239          145 TLGGKRVGIVGL-----G---SIGSEVAKRLVPFGCSIAYTSRKKKPG-V-------------S--YPFYANVSGLAADS  200 (286)
Q Consensus       145 ~l~g~~vgIiG~-----G---~iG~~~A~~l~~~g~~V~~~~r~~~~~-~-------------~--~~~~~~l~e~l~~a  200 (286)
                      .+.|++|+|+|-     |   ++..+++..+..+|++|.+..+..-.. .             +  +....+++++++++
T Consensus       184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a  263 (395)
T PRK07200        184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA  263 (395)
T ss_pred             ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            378999999985     5   677999999999999999888754211 1             1  22357999999999


Q ss_pred             CEEEEec----cC----------Ch-----------------hhhhcccHHHHhcCCCC-cEEEEcC
Q 043239          201 DVLIVCC----AL----------TE-----------------ETHHMINKDVMTALGKE-GVIINVG  235 (286)
Q Consensus       201 DiV~~~l----p~----------~~-----------------~t~~~i~~~~l~~mk~g-~ilvn~s  235 (286)
                      |+|.+-.    ..          .+                 -...-++++.++.++++ ++|.-+.
T Consensus       264 DvVYtd~W~sm~~~~er~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~elm~~a~~~~ai~MHcL  330 (395)
T PRK07200        264 DIVYPKSWAPYKVMEERTELYRAGDHEGIKALEKELLAQNAQHKDWHCTEEMMKLTKDGKALYMHCL  330 (395)
T ss_pred             CEEEEcCeeecccccccccccccccchhhhhhhhhhhHHHHHccCCCcCHHHHhccCCCCcEEECCC
Confidence            9997752    10          00                 12234677888888885 8988885

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=94.31  E-value=0.11  Score=47.26  Aligned_cols=85  Identities=19%  Similarity=0.112  Sum_probs=55.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCE-EEEECCCCCCCCCcc--cccCHHH-hhcCCCEEEEeccCChhhhhcccHHHH
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKKPGVSYP--FYANVSG-LAADSDVLIVCCALTEETHHMINKDVM  222 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~-V~~~~r~~~~~~~~~--~~~~l~e-~l~~aDiV~~~lp~~~~t~~~i~~~~l  222 (286)
                      .++++.|+|.|.+|...++.++.+|++ |.+.++..++.....  ...+..+ .-...|+|+-++... .   .+ ...+
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~G~~-~---~~-~~~~  218 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDASGDP-S---LI-DTLV  218 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECCCCH-H---HH-HHHH
Confidence            467899999999999999999999997 556665543322111  1111111 123579888876531 1   11 3567


Q ss_pred             hcCCCCcEEEEcCC
Q 043239          223 TALGKEGVIINVGR  236 (286)
Q Consensus       223 ~~mk~g~ilvn~sr  236 (286)
                      +.++++..++.+|-
T Consensus       219 ~~l~~~G~iv~~G~  232 (308)
T TIGR01202       219 RRLAKGGEIVLAGF  232 (308)
T ss_pred             HhhhcCcEEEEEee
Confidence            78899998888763

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=94.30  E-value=0.16  Score=46.26  Aligned_cols=82  Identities=17%  Similarity=0.278  Sum_probs=52.0

Q ss_pred             CEEEEEcCChHHHHHHHHhcc-CCCEEE-EECCCCCCC-------CCcc-cccCHHHhhc--CCCEEEEeccCChhhhhc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVP-FGCSIA-YTSRKKKPG-------VSYP-FYANVSGLAA--DSDVLIVCCALTEETHHM  216 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~-~g~~V~-~~~r~~~~~-------~~~~-~~~~l~e~l~--~aDiV~~~lp~~~~t~~~  216 (286)
                      .++||||.|.||+..+..+.. -++++. ++++++++.       .+.. .+.+.+++++  +.|+|+++.|......  
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e--   79 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHAR--   79 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHH--
Confidence            479999999999998766654 456765 566655431       1222 2457888875  5788999988542211  


Q ss_pred             ccHHHHhcCCCCcEEEEcC
Q 043239          217 INKDVMTALGKEGVIINVG  235 (286)
Q Consensus       217 i~~~~l~~mk~g~ilvn~s  235 (286)
                         .....++.|..+++-.
T Consensus        80 ---~a~~al~aGk~VIdek   95 (285)
T TIGR03215        80 ---HARLLAELGKIVIDLT   95 (285)
T ss_pred             ---HHHHHHHcCCEEEECC
Confidence               2233345676666654

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PLN02214 cinnamoyl-CoA reductase

Probab=94.28  E-value=0.13  Score=47.72  Aligned_cols=63  Identities=22%  Similarity=0.247  Sum_probs=46.9

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC------------Cc-------ccccCHHHhhcCCCEEEE
Q 043239          146 LGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV------------SY-------PFYANVSGLAADSDVLIV  205 (286)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------------~~-------~~~~~l~e~l~~aDiV~~  205 (286)
                      +++++|.|.|. |.||+.+++.|...|++|.+..|+.....            ..       ....+++++++.+|+|+.
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih   87 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFH   87 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEE
Confidence            57889999997 99999999999999999998887654210            01       112345677888998877


Q ss_pred             ecc
Q 043239          206 CCA  208 (286)
Q Consensus       206 ~lp  208 (286)
                      +..
T Consensus        88 ~A~   90 (342)
T PLN02214         88 TAS   90 (342)
T ss_pred             ecC
Confidence            653

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.28  E-value=0.04  Score=44.10  Aligned_cols=34  Identities=44%  Similarity=0.607  Sum_probs=29.2

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKK  181 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~  181 (286)
                      .++|.|+|+|.+|..+|+.|...|+ ++..+|...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            5799999999999999999999998 788887543

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=94.26  E-value=0.28  Score=47.39  Aligned_cols=101  Identities=13%  Similarity=0.137  Sum_probs=64.4

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccC-------CC--EEEEECCCCCCCCC---------------cccccCHHHhhcCCCEE
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPF-------GC--SIAYTSRKKKPGVS---------------YPFYANVSGLAADSDVL  203 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~-------g~--~V~~~~r~~~~~~~---------------~~~~~~l~e~l~~aDiV  203 (286)
                      .+|+|||. |.+|..+|-.|...       |.  +++.+|++.+...+               .....+-.+.+++||+|
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV  180 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA  180 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence            38999999 99999999998765       44  68888987766431               01112445788999999


Q ss_pred             EEeccCC--hh-h--------hhcccH--HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239          204 IVCCALT--EE-T--------HHMINK--DVMTA-LGKEGVIINVGRGALIDEKELVHFLVR  251 (286)
Q Consensus       204 ~~~lp~~--~~-t--------~~~i~~--~~l~~-mk~g~ilvn~srg~~vd~~al~~al~~  251 (286)
                      ++..-..  +. +        ..++..  ..+.. ..+.+++|.++  .++|.-+.+-.-..
T Consensus       181 VitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~~k~s  240 (444)
T PLN00112        181 LLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALICLKNA  240 (444)
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHHHHHc
Confidence            9975321  11 1        111111  12333 46789999996  66666665554333

>PRK14851 hypothetical protein; Provisional

Probab=94.21  E-value=0.11  Score=52.93  Aligned_cols=36  Identities=22%  Similarity=0.344  Sum_probs=31.6

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSR  179 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r  179 (286)
                      ..|++++|+|+|+|.+|..++..|...|. ++..+|.
T Consensus        39 ~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~   75 (679)
T PRK14851         39 ERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADF   75 (679)
T ss_pred             HHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcC
Confidence            46899999999999999999999999888 6766663

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=94.19  E-value=0.31  Score=44.54  Aligned_cols=141  Identities=15%  Similarity=0.203  Sum_probs=84.2

Q ss_pred             CCccEEEEcCCCCCcCChhHHhhcCe-EEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCC
Q 043239           69 PALEIVVGSTAGIDHVDLQECRRRGI-LVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLG  147 (286)
Q Consensus        69 ~~Lk~i~~~~~G~d~id~~~~~~~gI-~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~  147 (286)
                      ++.=+|=+...|+-.+   ++..-++ +|.|+++.....=.+..| =++...+.                    .| .+.
T Consensus       103 ~D~iViRH~~egaa~~---~a~~~~~~pvINaGDG~~qHPTQ~LL-Dl~TI~~~--------------------~G-~~~  157 (316)
T COG0540         103 VDAIVIRHPEEGAARL---LAEFSGVNPVINAGDGSHQHPTQALL-DLYTIREE--------------------FG-RLD  157 (316)
T ss_pred             CCEEEEeCccccHHHH---HHHhcCCCceEECCCCCCCCccHHHH-HHHHHHHH--------------------hC-CcC
Confidence            3444444445554443   3333466 699987654443333322 22222222                    12 288


Q ss_pred             CCEEEEEc---CChHHHHHHHHhccCCCEEEEECCCCCCCC----------C-c-ccccCHHHhhcCCCEEEEeccCChh
Q 043239          148 GKRVGIVG---LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------S-Y-PFYANVSGLAADSDVLIVCCALTEE  212 (286)
Q Consensus       148 g~~vgIiG---~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------~-~-~~~~~l~e~l~~aDiV~~~lp~~~~  212 (286)
                      |.+|+|+|   .|+..++.++.|..||.+|....+..-...          + . ......+|+++++|++.+. ..-.+
T Consensus       158 gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~l-RvQ~E  236 (316)
T COG0540         158 GLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYML-RVQKE  236 (316)
T ss_pred             CcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEee-hhhHh
Confidence            99999999   899999999999999999999887543331          1 1 2234555699999999663 21111


Q ss_pred             ----------hh--hcccHHHHhc-CCCCcEEEEcC
Q 043239          213 ----------TH--HMINKDVMTA-LGKEGVIINVG  235 (286)
Q Consensus       213 ----------t~--~~i~~~~l~~-mk~g~ilvn~s  235 (286)
                                .+  +.+....+.. +|+++++.--+
T Consensus       237 R~~~~~~~s~~~~y~~~~~~~~~~~~k~~~ivmHP~  272 (316)
T COG0540         237 RFNDPEEYSKVKEYYKLYGLTLERLAKPDAIVMHPL  272 (316)
T ss_pred             hcCCccchHHHHHHHHHHHHHHHhhcCCCcEEECCC
Confidence                      11  1112234455 88888888765

>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]

Probab=94.19  E-value=0.12  Score=50.91  Aligned_cols=81  Identities=21%  Similarity=0.330  Sum_probs=62.4

Q ss_pred             ccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239          144 STLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM  222 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l  222 (286)
                      ..+.|++..++|-.. +|.+++..|+.....|+++-..         ..++.|.+.++|+|+.++-    ..+++..+  
T Consensus       158 v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSK---------T~~lae~v~~ADIvIvAiG----~PefVKgd--  222 (935)
T KOG4230|consen  158 VFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSK---------TRNLAEKVSRADIVIVAIG----QPEFVKGD--  222 (935)
T ss_pred             CccccceeEEEecccccCChHHHHHHhcCceEEEecCC---------CccHHHHhccCCEEEEEcC----Ccceeecc--
Confidence            458999999999765 5999999999988899875321         3588999999999999975    23344443  


Q ss_pred             hcCCCCcEEEEcCCCccc
Q 043239          223 TALGKEGVIINVGRGALI  240 (286)
Q Consensus       223 ~~mk~g~ilvn~srg~~v  240 (286)
                       .+|||+++||++--.+-
T Consensus       223 -WiKpGavVIDvGINyvp  239 (935)
T KOG4230|consen  223 -WIKPGAVVIDVGINYVP  239 (935)
T ss_pred             -cccCCcEEEEccccccC
Confidence             46899999999854433

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=94.16  E-value=0.24  Score=46.23  Aligned_cols=84  Identities=20%  Similarity=0.336  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC------CCccc---cc---CHHHhhcCCCEEEEeccCChhhh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG------VSYPF---YA---NVSGLAADSDVLIVCCALTEETH  214 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~------~~~~~---~~---~l~e~l~~aDiV~~~lp~~~~t~  214 (286)
                      .|.+|.|.|.|.+|...++.++.+|.+|++.+.+.++.      .+...   ..   .+.+.....|+++-++... .  
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~-~--  259 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAV-H--  259 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCH-H--
Confidence            57899999999999999999999999987766544321      12211   11   2233334579888776421 1  


Q ss_pred             hcccHHHHhcCCCCcEEEEcC
Q 043239          215 HMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~s  235 (286)
                       .+ ...++.++++..++.++
T Consensus       260 -~~-~~~~~~l~~~G~iv~vG  278 (360)
T PLN02586        260 -AL-GPLLGLLKVNGKLITLG  278 (360)
T ss_pred             -HH-HHHHHHhcCCcEEEEeC
Confidence             11 23566677777777765

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=94.16  E-value=0.071  Score=48.33  Aligned_cols=58  Identities=33%  Similarity=0.398  Sum_probs=39.8

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcC--CCEEEEeccC
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAAD--SDVLIVCCAL  209 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~--aDiV~~~lp~  209 (286)
                      |+|.|+| -|.+|+.+.+.|...|++|+.++|+.-.   ......+.+++.+  .|+|+.|...
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~d---l~d~~~~~~~~~~~~pd~Vin~aa~   61 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGYEVIATSRSDLD---LTDPEAVAKLLEAFKPDVVINCAAY   61 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS----TTSHHHHHHHHHHH--SEEEE----
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcC---CCCHHHHHHHHHHhCCCeEecccee
Confidence            6899999 6999999999999999999999876222   1223344555543  7999888643

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=94.15  E-value=0.09  Score=48.78  Aligned_cols=85  Identities=22%  Similarity=0.328  Sum_probs=57.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCC---CCCC-----Ccccc----cCHHH--hhcCCCEEEEeccCChh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKK---KPGV-----SYPFY----ANVSG--LAADSDVLIVCCALTEE  212 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~---~~~~-----~~~~~----~~l~e--~l~~aDiV~~~lp~~~~  212 (286)
                      .|.+|.|+|.|.+|...++.++..|.+|++.+++.   ++..     ++...    .++.+  .....|+|+-++... .
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~-~  250 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVP-P  250 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCH-H
Confidence            57899999999999999999999999999988742   2211     21111    11111  224579999887522 1


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCC
Q 043239          213 THHMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       213 t~~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                         .+ .+.++.|+++..++.++.
T Consensus       251 ---~~-~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         251 ---LA-FEALPALAPNGVVILFGV  270 (355)
T ss_pred             ---HH-HHHHHHccCCcEEEEEec
Confidence               22 456788999998888764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK10206 putative oxidoreductase; Provisional

Probab=94.12  E-value=0.084  Score=49.23  Aligned_cols=63  Identities=17%  Similarity=0.310  Sum_probs=42.8

Q ss_pred             CEEEEEcCChHHHH-HHHHhcc--CCCEEE-EECCCCCCCC-----C-cccccCHHHhhc--CCCEEEEeccCCh
Q 043239          149 KRVGIVGLGSIGSE-VAKRLVP--FGCSIA-YTSRKKKPGV-----S-YPFYANVSGLAA--DSDVLIVCCALTE  211 (286)
Q Consensus       149 ~~vgIiG~G~iG~~-~A~~l~~--~g~~V~-~~~r~~~~~~-----~-~~~~~~l~e~l~--~aDiV~~~lp~~~  211 (286)
                      .++||||+|.+++. .+..+..  -+++|. ++|++.+...     + ...+.+++++++  +.|+|++++|...
T Consensus         2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~   76 (344)
T PRK10206          2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADS   76 (344)
T ss_pred             eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchH
Confidence            37999999998753 3454422  357775 6787654321     1 234678999996  5799999998553

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=94.11  E-value=0.21  Score=45.56  Aligned_cols=30  Identities=27%  Similarity=0.481  Sum_probs=26.4

Q ss_pred             EEEEEcCChHHHHHHHHhccCCC-EEEEECC
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGC-SIAYTSR  179 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r  179 (286)
                      +|.|+|+|.+|.++++.|...|. ++.+.|.
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~   31 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDM   31 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            58999999999999999998888 6777774

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PLN02427 UDP-apiose/xylose synthase

Probab=94.11  E-value=0.11  Score=48.94  Aligned_cols=65  Identities=17%  Similarity=0.196  Sum_probs=47.2

Q ss_pred             cccCCCCEEEEEc-CChHHHHHHHHhccC-CCEEEEECCCCCCCC------------Ccc-------cccCHHHhhcCCC
Q 043239          143 GSTLGGKRVGIVG-LGSIGSEVAKRLVPF-GCSIAYTSRKKKPGV------------SYP-------FYANVSGLAADSD  201 (286)
Q Consensus       143 ~~~l~g~~vgIiG-~G~iG~~~A~~l~~~-g~~V~~~~r~~~~~~------------~~~-------~~~~l~e~l~~aD  201 (286)
                      |+.++.++|.|.| .|-||+.+++.|... |++|.+++|+.....            ...       ...++.++++++|
T Consensus         9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d   88 (386)
T PLN02427          9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD   88 (386)
T ss_pred             CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence            6678889999999 599999999999987 589998887643210            010       1234566788899


Q ss_pred             EEEEec
Q 043239          202 VLIVCC  207 (286)
Q Consensus       202 iV~~~l  207 (286)
                      +|+-+.
T Consensus        89 ~ViHlA   94 (386)
T PLN02427         89 LTINLA   94 (386)
T ss_pred             EEEEcc
Confidence            886654

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=94.05  E-value=0.024  Score=44.16  Aligned_cols=95  Identities=20%  Similarity=0.326  Sum_probs=57.7

Q ss_pred             cCChHHHHHHHHhccC----CCEEE-EECCC--CCCC-----CCcccccCHHHhhc--CCCEEEEeccCChhhhhcccHH
Q 043239          155 GLGSIGSEVAKRLVPF----GCSIA-YTSRK--KKPG-----VSYPFYANVSGLAA--DSDVLIVCCALTEETHHMINKD  220 (286)
Q Consensus       155 G~G~iG~~~A~~l~~~----g~~V~-~~~r~--~~~~-----~~~~~~~~l~e~l~--~aDiV~~~lp~~~~t~~~i~~~  220 (286)
                      |+|.||+.+++.+...    +++|. +++|+  ....     .......++++++.  ..|+|+=|.+ .+...    +-
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~-~~~~~----~~   75 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTS-SEAVA----EY   75 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SS-CHHHH----HH
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCC-chHHH----HH
Confidence            8999999999999865    56765 56666  1111     12334678999988  8999988854 22222    23


Q ss_pred             HHhcCCCCcEEEEcCCCccc---CHHHHHHHHHhCCe
Q 043239          221 VMTALGKEGVIINVGRGALI---DEKELVHFLVRGSL  254 (286)
Q Consensus       221 ~l~~mk~g~ilvn~srg~~v---d~~al~~al~~~~i  254 (286)
                      ....|+.|.-+|-.+-+.+.   ..+.|.++.++++.
T Consensus        76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~  112 (117)
T PF03447_consen   76 YEKALERGKHVVTANKGALADEALYEELREAARKNGV  112 (117)
T ss_dssp             HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCC
Confidence            44556788888988888877   33444454454443

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=94.04  E-value=0.12  Score=48.08  Aligned_cols=36  Identities=28%  Similarity=0.273  Sum_probs=32.2

Q ss_pred             CCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCC
Q 043239          146 LGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       146 l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      +++++|.|.| .|-+|+.+++.|...|++|+++++..
T Consensus        13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~   49 (348)
T PRK15181         13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS   49 (348)
T ss_pred             ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            6778999999 59999999999999999999998743

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=94.03  E-value=0.13  Score=46.04  Aligned_cols=85  Identities=19%  Similarity=0.264  Sum_probs=57.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCE-EEEECCCCCCCC-----Cccc---ccCHHH----hh--cCCCEEEEeccCCh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKKPGV-----SYPF---YANVSG----LA--ADSDVLIVCCALTE  211 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~-V~~~~r~~~~~~-----~~~~---~~~l~e----~l--~~aDiV~~~lp~~~  211 (286)
                      .|.+|.|+|.|.+|...++.++.+|.+ |++.+++.++..     +...   ..+..+    +.  ...|+++-++....
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~  199 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATA  199 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChH
Confidence            578999999999999999999999996 887776654321     2211   111111    21  24799888764221


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCC
Q 043239          212 ETHHMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       212 ~t~~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                          .+ ...++.++++..++.++-
T Consensus       200 ----~~-~~~~~~l~~~G~iv~~G~  219 (280)
T TIGR03366       200 ----AV-RACLESLDVGGTAVLAGS  219 (280)
T ss_pred             ----HH-HHHHHHhcCCCEEEEecc
Confidence                11 345777899999998873

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=94.01  E-value=0.12  Score=47.98  Aligned_cols=29  Identities=34%  Similarity=0.540  Sum_probs=23.3

Q ss_pred             EEEEEcCChHHHHHHHHhccCC----CEEEEEC
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFG----CSIAYTS  178 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g----~~V~~~~  178 (286)
                      +|||.|+|+||+.+.+.+...+    ++|...+
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaIn   33 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALN   33 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEe
Confidence            5899999999999999987643    6776543

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=94.00  E-value=0.12  Score=48.54  Aligned_cols=61  Identities=25%  Similarity=0.257  Sum_probs=43.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc-------cccCHHHhhcCCCEEEEec
Q 043239          147 GGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP-------FYANVSGLAADSDVLIVCC  207 (286)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~-------~~~~l~e~l~~aDiV~~~l  207 (286)
                      .+|+|.|.|. |.||+.+++.|...|++|.+.+|......     ...       ...++..++.++|+|+-+.
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A   93 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA   93 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence            5789999996 99999999999999999999887543211     001       1123345567899887664

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=93.97  E-value=0.18  Score=46.71  Aligned_cols=60  Identities=17%  Similarity=0.105  Sum_probs=43.3

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccCCC-------EEEEECCCCCC--CCC---------------cccccCHHHhhcCCCEE
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPFGC-------SIAYTSRKKKP--GVS---------------YPFYANVSGLAADSDVL  203 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~g~-------~V~~~~r~~~~--~~~---------------~~~~~~l~e~l~~aDiV  203 (286)
                      .+|+|||. |.+|..+|..|...|.       ++..+|.....  ..+               .....+..+.+++||+|
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV   83 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA   83 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence            38999998 9999999999887664       68888885422  211               01113456789999999


Q ss_pred             EEecc
Q 043239          204 IVCCA  208 (286)
Q Consensus       204 ~~~lp  208 (286)
                      +++.-
T Consensus        84 VitAG   88 (323)
T TIGR01759        84 LLVGA   88 (323)
T ss_pred             EEeCC
Confidence            98754

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=93.95  E-value=0.45  Score=43.37  Aligned_cols=90  Identities=16%  Similarity=0.252  Sum_probs=67.5

Q ss_pred             CCCCEEEEEcCC-hHHHHHHHHhccCCCEEEEECCCCCCCC--------------C--cccccCHHHhhcCCCEEEEecc
Q 043239          146 LGGKRVGIVGLG-SIGSEVAKRLVPFGCSIAYTSRKKKPGV--------------S--YPFYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       146 l~g~~vgIiG~G-~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------------~--~~~~~~l~e~l~~aDiV~~~lp  208 (286)
                      ++|++++.+|-| +|+.++......+|++|.+..+..-...              +  .....++++.++.+|+|..=+.
T Consensus       151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvW  230 (310)
T COG0078         151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVW  230 (310)
T ss_pred             ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCc
Confidence            899999999955 6899999999999999988876543321              1  2235789999999999976432


Q ss_pred             C--Chhhh-----------hcccHHHHhcCCCCcEEEEcC
Q 043239          209 L--TEETH-----------HMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       209 ~--~~~t~-----------~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      .  .++.+           .-++.++++..+++++|.-|-
T Consensus       231 vSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHCL  270 (310)
T COG0078         231 VSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHCL  270 (310)
T ss_pred             ccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeCC
Confidence            2  12221           567888899889999999984

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=93.94  E-value=0.12  Score=45.42  Aligned_cols=38  Identities=26%  Similarity=0.431  Sum_probs=33.8

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      ++.|+++.|.|. |.+|..+|+.|...|++|.+.+|+..
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~   45 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPA   45 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            478999999985 99999999999999999999888653

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=93.93  E-value=0.1  Score=46.02  Aligned_cols=65  Identities=20%  Similarity=0.299  Sum_probs=46.3

Q ss_pred             cCCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCC-------CCccc--------ccCHHHhh-cCCCEEEEec
Q 043239          145 TLGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPG-------VSYPF--------YANVSGLA-ADSDVLIVCC  207 (286)
Q Consensus       145 ~l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-------~~~~~--------~~~l~e~l-~~aDiV~~~l  207 (286)
                      ...+++|.|+| .|.+|+.+++.|...|++|++..|+.++.       ..+..        ..++.+.+ ...|+|+.+.
T Consensus        14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~   93 (251)
T PLN00141         14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICAT   93 (251)
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECC
Confidence            46788999999 59999999999999999998887764321       01110        12334455 5799999776


Q ss_pred             cC
Q 043239          208 AL  209 (286)
Q Consensus       208 p~  209 (286)
                      +.
T Consensus        94 g~   95 (251)
T PLN00141         94 GF   95 (251)
T ss_pred             CC
Confidence            54

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=93.90  E-value=0.12  Score=49.10  Aligned_cols=66  Identities=24%  Similarity=0.259  Sum_probs=47.9

Q ss_pred             cccCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCC-------------CCcc-------cccCHHHhhc---
Q 043239          143 GSTLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPG-------------VSYP-------FYANVSGLAA---  198 (286)
Q Consensus       143 ~~~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~-------------~~~~-------~~~~l~e~l~---  198 (286)
                      ++...+++|.|+|. |.||+.+++.|...|++|.+.+|+....             .+..       ...++.++++   
T Consensus        55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~  134 (390)
T PLN02657         55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEG  134 (390)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhC
Confidence            44577889999985 9999999999999999999888865321             0111       1234555666   


Q ss_pred             -CCCEEEEecc
Q 043239          199 -DSDVLIVCCA  208 (286)
Q Consensus       199 -~aDiV~~~lp  208 (286)
                       .+|+|+.|+.
T Consensus       135 ~~~D~Vi~~aa  145 (390)
T PLN02657        135 DPVDVVVSCLA  145 (390)
T ss_pred             CCCcEEEECCc
Confidence             5899988764

>PRK06523 short chain dehydrogenase; Provisional

Probab=93.90  E-value=0.41  Score=42.00  Aligned_cols=40  Identities=30%  Similarity=0.415  Sum_probs=34.8

Q ss_pred             cccCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          143 GSTLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       143 ~~~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      ..+++|+++.|.|. |.||..+++.|...|++|++.+|+..
T Consensus         4 ~~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~   44 (260)
T PRK06523          4 FLELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP   44 (260)
T ss_pred             CcCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh
Confidence            34588999999995 89999999999999999999888654

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=93.89  E-value=0.26  Score=43.58  Aligned_cols=30  Identities=37%  Similarity=0.538  Sum_probs=26.2

Q ss_pred             EEEEEcCChHHHHHHHHhccCCC-EEEEECC
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGC-SIAYTSR  179 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r  179 (286)
                      +|.|+|+|.+|.++++.|...|. ++.++|.
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~   31 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDM   31 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeC
Confidence            58999999999999999998887 6777764

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=93.89  E-value=0.11  Score=47.07  Aligned_cols=60  Identities=22%  Similarity=0.207  Sum_probs=44.6

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc-------cccCHHHhhcCCCEEEEecc
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP-------FYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~-------~~~~l~e~l~~aDiV~~~lp  208 (286)
                      +++.|.| .|.+|+.+++.|...|++|.+.+|+.....     +..       ...++.++++.+|+|+.+..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~   73 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA   73 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence            4788998 599999999999999999999988755421     111       12345677888998877654

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=93.82  E-value=0.17  Score=53.54  Aligned_cols=65  Identities=25%  Similarity=0.377  Sum_probs=53.2

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC--------------------------Cc--------cccc
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV--------------------------SY--------PFYA  191 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------------------------~~--------~~~~  191 (286)
                      -.|++|+|||-|..|.+.|..|...|+.|++|.|+.+.--                          +.        ....
T Consensus      1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~v 1862 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHV 1862 (2142)
T ss_pred             ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccccc
Confidence            5799999999999999999999999999999999875310                          11        1236


Q ss_pred             CHHHhhcCCCEEEEeccCC
Q 043239          192 NVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       192 ~l~e~l~~aDiV~~~lp~~  210 (286)
                      +++++.+.-|.|+++.-.|
T Consensus      1863 s~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1863 SLDELKKENDAIVLATGST 1881 (2142)
T ss_pred             cHHHHhhccCeEEEEeCCC
Confidence            8999999999999986544

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=93.81  E-value=0.059  Score=57.08  Aligned_cols=121  Identities=10%  Similarity=0.125  Sum_probs=77.2

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEE-------------------------EEE--CCCCC---CCCC--c------
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSI-------------------------AYT--SRKKK---PGVS--Y------  187 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V-------------------------~~~--~r~~~---~~~~--~------  187 (286)
                      +.-.++.|+|.|++|+..++.+..+|++.                         ++.  .+...   ...+  +      
T Consensus       201 v~P~~vVi~G~G~Vg~gA~~i~~~lg~~~v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~y~  280 (1042)
T PLN02819        201 ICPLVFVFTGSGNVSQGAQEIFKLLPHTFVEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKADYY  280 (1042)
T ss_pred             CCCeEEEEeCCchHHHHHHHHHhhcCCCccCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhhhc
Confidence            44578999999999999999988876541                         100  00000   0000  0      


Q ss_pred             ----ccccC-HHHhhcCCCEEEEeccCChhhhhcccHH-HHhcCCCCc----EEEEcC--CCcccCHH------------
Q 043239          188 ----PFYAN-VSGLAADSDVLIVCCALTEETHHMINKD-VMTALGKEG----VIINVG--RGALIDEK------------  243 (286)
Q Consensus       188 ----~~~~~-l~e~l~~aDiV~~~lp~~~~t~~~i~~~-~l~~mk~g~----ilvn~s--rg~~vd~~------------  243 (286)
                          ..... +++.+..+|+++.|+-..+....++.++ +.+.||+|+    +|+|++  .|+.+..-            
T Consensus       281 ~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs~D~gG~ie~~~~~Tt~~~P~~~  360 (1042)
T PLN02819        281 AHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDITCDIGGSIEFLNKTTSIEKPFFR  360 (1042)
T ss_pred             cCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEccCCCCCeeecccCCCCcCCeEe
Confidence                00011 3467889999999997777788888888 788899998    899987  44444222            


Q ss_pred             ------HHHHHHHhCCeeEEEeeccCCCC
Q 043239          244 ------ELVHFLVRGSLVELVLMCLRTSL  266 (286)
Q Consensus       244 ------al~~al~~~~i~ga~lDv~~~e~  266 (286)
                            ...+-.....+..+++|-...+.
T Consensus       361 ~~~~~~~~~~~~~~~gv~~~~VdNlP~~l  389 (1042)
T PLN02819        361 YNPSNNSYHDDMDGDGILCMAVDILPTEF  389 (1042)
T ss_pred             ecccccccccccCCCCeEEEEECCccccC
Confidence                  11122234467778888887663

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=93.80  E-value=0.38  Score=46.03  Aligned_cols=104  Identities=18%  Similarity=0.197  Sum_probs=66.2

Q ss_pred             EEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----------Ccccc--cCHHHhhcCCCEEEEec--cC-Chhh
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----------SYPFY--ANVSGLAADSDVLIVCC--AL-TEET  213 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----------~~~~~--~~l~e~l~~aDiV~~~l--p~-~~~t  213 (286)
                      ++.|+|+|..|.++|+.|+..|++|.++|.......           +....  .+ .+.+.++|+|+..-  |. ++..
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~   79 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV   79 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence            478999999999999999999999999997543211           11111  23 34567899887752  32 2211


Q ss_pred             h-------hcccHH-HH-hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239          214 H-------HMINKD-VM-TALGKEGVIINVGRGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       214 ~-------~~i~~~-~l-~~mk~g~ilvn~srg~~vd~~al~~al~~~~i  254 (286)
                      .       .++.+. .+ ..++...+-|-=+.|......-+...|+..+.
T Consensus        80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~  129 (433)
T TIGR01087        80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGL  129 (433)
T ss_pred             HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence            1       123222 22 33333345555578998888888888887553

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=93.80  E-value=0.24  Score=44.08  Aligned_cols=86  Identities=16%  Similarity=0.177  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCC-----------CEEEEECCCCCCCC------------C----------------c
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFG-----------CSIAYTSRKKKPGV------------S----------------Y  187 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g-----------~~V~~~~r~~~~~~------------~----------------~  187 (286)
                      +..+|.|||+|.+|..+++.|...|           .+++++|...=...            +                .
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~~ri~~~~~~   89 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVLVNRLNQAMGT   89 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHHHHHHHhccCc
Confidence            5679999999999999999998653           27888875321100            0                0


Q ss_pred             --c----cccCHHHhhcCCCEEEEeccCChhhhhcccHHHHh--cCCCCcEEEEcCC
Q 043239          188 --P----FYANVSGLAADSDVLIVCCALTEETHHMINKDVMT--ALGKEGVIINVGR  236 (286)
Q Consensus       188 --~----~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~--~mk~g~ilvn~sr  236 (286)
                        .    .+.. ++.+.++|+|+.|+ ++-+++..+++....  .|  ...+++.|.
T Consensus        90 ~i~a~~~~~~~-~~~~~~~DiVi~av-Dn~~aR~~l~~~~~~~~~~--~~~~ld~Gn  142 (244)
T TIGR03736        90 DWTAHPERVER-SSTLHRPDIVIGCV-DNRAARLAILRAFEGGYSG--YAYWLDLGN  142 (244)
T ss_pred             eEEEEEeeeCc-hhhhcCCCEEEECC-CCHHHHHHHHHHHHHhccc--ccceecccC
Confidence              0    0111 33456789888877 466677777665544  22  246777764

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK05865 hypothetical protein; Provisional

Probab=93.79  E-value=0.31  Score=50.84  Aligned_cols=90  Identities=20%  Similarity=0.335  Sum_probs=56.8

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC--Cc-------ccccCHHHhhcCCCEEEEeccCChhh--hhc
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV--SY-------PFYANVSGLAADSDVLIVCCALTEET--HHM  216 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--~~-------~~~~~l~e~l~~aDiV~~~lp~~~~t--~~~  216 (286)
                      |+|.|.| .|.||+.+++.|.+.|++|.+.+|+.....  ..       ....++.++++.+|+|+.+.......  .++
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~~~~~~vNv   80 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSWPSSADFIAADIRDATAVESAMTGADVVAHCAWVRGRNDHINI   80 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhcccCceEEEeeCCCHHHHHHHHhCCCEEEECCCcccchHHHHH
Confidence            4789998 499999999999999999999888643211  11       11234566788899988775432110  001


Q ss_pred             c-cHHHHhcCCCC--cEEEEcCCCc
Q 043239          217 I-NKDVMTALGKE--GVIINVGRGA  238 (286)
Q Consensus       217 i-~~~~l~~mk~g--~ilvn~srg~  238 (286)
                      . ....++.|+..  ..||.+|...
T Consensus        81 ~GT~nLLeAa~~~gvkr~V~iSS~~  105 (854)
T PRK05865         81 DGTANVLKAMAETGTGRIVFTSSGH  105 (854)
T ss_pred             HHHHHHHHHHHHcCCCeEEEECCcH
Confidence            1 12344445332  3688888765

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=93.72  E-value=0.74  Score=42.90  Aligned_cols=96  Identities=13%  Similarity=0.117  Sum_probs=63.5

Q ss_pred             C-CCCEEEEEcCC-------hHHHHHHHHhccCCCEEEEECC-CCCCCC--------------C--cccccCHHHhhcCC
Q 043239          146 L-GGKRVGIVGLG-------SIGSEVAKRLVPFGCSIAYTSR-KKKPGV--------------S--YPFYANVSGLAADS  200 (286)
Q Consensus       146 l-~g~~vgIiG~G-------~iG~~~A~~l~~~g~~V~~~~r-~~~~~~--------------~--~~~~~~l~e~l~~a  200 (286)
                      + .|++|+|+|.|       ++..+++..+..+|++|.+..+ ..-...              +  +....+++++++++
T Consensus       166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~a  245 (335)
T PRK04523        166 TLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGA  245 (335)
T ss_pred             ccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            5 68899776543       7888999999999999998887 332111              1  22357899999999


Q ss_pred             CEEEEeccC------C-h---h-----hhhcccHHHHhcCCCCcEEEEcC---CCcccCH
Q 043239          201 DVLIVCCAL------T-E---E-----THHMINKDVMTALGKEGVIINVG---RGALIDE  242 (286)
Q Consensus       201 DiV~~~lp~------~-~---~-----t~~~i~~~~l~~mk~g~ilvn~s---rg~~vd~  242 (286)
                      |+|..-.-.      . .   +     ....++++.++..+ +++|.-+.   ||.=|+.
T Consensus       246 Dvvy~~~w~~~~~~~~~~~~~~~~~~~~~y~v~~~ll~~a~-~~i~mHcLP~~Rg~Ei~~  304 (335)
T PRK04523        246 DVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMALTN-NGVFSHCLPLRRNVKVTD  304 (335)
T ss_pred             CEEEeceeeccccCCcccccHHHHHhCcCCcCCHHHHhCCC-CCEEECCCCCCCCCeeCH
Confidence            999764311      0 0   1     12446777777654 67777774   5543433

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=93.72  E-value=0.16  Score=47.38  Aligned_cols=81  Identities=15%  Similarity=0.182  Sum_probs=49.3

Q ss_pred             EEEEEc-CChHHHHHHHHhccCCCE---EEEECCCCCC--CC---Ccc-cccCH-HHhhcCCCEEEEeccCChhhhhccc
Q 043239          150 RVGIVG-LGSIGSEVAKRLVPFGCS---IAYTSRKKKP--GV---SYP-FYANV-SGLAADSDVLIVCCALTEETHHMIN  218 (286)
Q Consensus       150 ~vgIiG-~G~iG~~~A~~l~~~g~~---V~~~~r~~~~--~~---~~~-~~~~l-~e~l~~aDiV~~~lp~~~~t~~~i~  218 (286)
                      +|+|+| .|.+|+.+++.|...++.   +.++.+....  ..   +.. ...++ .+.+.++|+++.|+|.. .+..+. 
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~-~s~~~a-   78 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGS-VSKEFA-   78 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHH-HHHHHH-
Confidence            589999 899999999999987664   3333333222  11   110 11122 23458899999999854 222221 


Q ss_pred             HHHHhcCCCCcEEEEcC
Q 043239          219 KDVMTALGKEGVIINVG  235 (286)
Q Consensus       219 ~~~l~~mk~g~ilvn~s  235 (286)
                      ...   ++.|+.+||.|
T Consensus        79 ~~~---~~~G~~VID~s   92 (339)
T TIGR01296        79 PKA---AKCGAIVIDNT   92 (339)
T ss_pred             HHH---HHCCCEEEECC
Confidence            122   35688899887

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=93.69  E-value=0.19  Score=46.61  Aligned_cols=59  Identities=17%  Similarity=0.078  Sum_probs=42.9

Q ss_pred             EEEEEcC-ChHHHHHHHHhccCC-------CEEEEECCCCCC--CCC----cc-----------cccCHHHhhcCCCEEE
Q 043239          150 RVGIVGL-GSIGSEVAKRLVPFG-------CSIAYTSRKKKP--GVS----YP-----------FYANVSGLAADSDVLI  204 (286)
Q Consensus       150 ~vgIiG~-G~iG~~~A~~l~~~g-------~~V~~~~r~~~~--~~~----~~-----------~~~~l~e~l~~aDiV~  204 (286)
                      +|+|+|. |.+|..++..|...+       .+|..+|+....  ..+    ..           ...++.+.+++||+|+
T Consensus         4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI   83 (325)
T cd01336           4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI   83 (325)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence            7999999 999999999998644       478889885422  221    00           1346668899999998


Q ss_pred             Eecc
Q 043239          205 VCCA  208 (286)
Q Consensus       205 ~~lp  208 (286)
                      .+.-
T Consensus        84 ~tAG   87 (325)
T cd01336          84 LVGA   87 (325)
T ss_pred             EeCC
Confidence            8743

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=93.54  E-value=0.14  Score=45.64  Aligned_cols=56  Identities=21%  Similarity=0.298  Sum_probs=42.0

Q ss_pred             EEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCC--CEEEEecc
Q 043239          150 RVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADS--DVLIVCCA  208 (286)
Q Consensus       150 ~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~a--DiV~~~lp  208 (286)
                      +|.|+| .|.+|+.+++.|.+.|++|.+.+|+..   ......++.++++.+  |+|+.+..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~---d~~~~~~~~~~~~~~~~d~vi~~a~   59 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQL---DLTDPEALERLLRAIRPDAVVNTAA   59 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCccc---CCCCHHHHHHHHHhCCCCEEEECCc
Confidence            477888 599999999999999999999988622   122234566677765  99887654

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK08628 short chain dehydrogenase; Provisional

Probab=93.53  E-value=0.15  Score=44.80  Aligned_cols=39  Identities=26%  Similarity=0.285  Sum_probs=33.9

Q ss_pred             ccCCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          144 STLGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       144 ~~l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      .+++|+++.|.| .|.||+.+|+.|.+.|++|.+.+|+..
T Consensus         3 ~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~   42 (258)
T PRK08628          3 LNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAP   42 (258)
T ss_pred             CCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChh
Confidence            358899999998 578999999999999999988887654

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=93.52  E-value=0.42  Score=43.54  Aligned_cols=38  Identities=37%  Similarity=0.533  Sum_probs=33.6

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKK  181 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~  181 (286)
                      +.|.+.+|.|+|+|.+|.++|+.|...|. +++.+|...
T Consensus        15 ~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~   53 (286)
T cd01491          15 KKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP   53 (286)
T ss_pred             HHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence            45889999999999999999999999998 688888654

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=93.52  E-value=0.32  Score=45.46  Aligned_cols=82  Identities=15%  Similarity=0.283  Sum_probs=50.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHhcc-CCCE---EEEE-CC-CCCCCCCc----ccc--cCHHHhhcCCCEEEEeccCChhh
Q 043239          147 GGKRVGIVGL-GSIGSEVAKRLVP-FGCS---IAYT-SR-KKKPGVSY----PFY--ANVSGLAADSDVLIVCCALTEET  213 (286)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~A~~l~~-~g~~---V~~~-~r-~~~~~~~~----~~~--~~l~e~l~~aDiV~~~lp~~~~t  213 (286)
                      .+.+|||||. |..|+.+.+.|.. -.+.   +..+ +. +..+...+    ...  .+.+ .++++|++++++|.. .+
T Consensus         4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~-~~~~~Divf~a~~~~-~s   81 (347)
T PRK06728          4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKIN-SFEGVDIAFFSAGGE-VS   81 (347)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHH-HhcCCCEEEECCChH-HH
Confidence            3469999996 9999999999984 4555   4333 22 22222111    011  2333 357899999999843 22


Q ss_pred             hhcccHHHHhc-CCCCcEEEEcC
Q 043239          214 HHMINKDVMTA-LGKEGVIINVG  235 (286)
Q Consensus       214 ~~~i~~~~l~~-mk~g~ilvn~s  235 (286)
                      .     +..+. .+.|+.+||.|
T Consensus        82 ~-----~~~~~~~~~G~~VID~S   99 (347)
T PRK06728         82 R-----QFVNQAVSSGAIVIDNT   99 (347)
T ss_pred             H-----HHHHHHHHCCCEEEECc
Confidence            2     22222 35688889887

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=93.50  E-value=0.26  Score=45.64  Aligned_cols=88  Identities=14%  Similarity=0.169  Sum_probs=55.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHhcc-CC-CEEEEECCCCCCCC---CcccccCHHHhhc--CCCEEEEeccCChhhhhcccH
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVP-FG-CSIAYTSRKKKPGV---SYPFYANVSGLAA--DSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~-~g-~~V~~~~r~~~~~~---~~~~~~~l~e~l~--~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      .|.+|.|+|.|.+|...++.++. +| .+|++.++++++..   ........++...  ..|+|+-++... .+...+ .
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~G~~-~~~~~~-~  240 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECVGGR-GSQSAI-N  240 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECCCCC-ccHHHH-H
Confidence            47899999999999999888875 44 57988888765432   1111111122222  379998877521 111122 3


Q ss_pred             HHHhcCCCCcEEEEcCC
Q 043239          220 DVMTALGKEGVIINVGR  236 (286)
Q Consensus       220 ~~l~~mk~g~ilvn~sr  236 (286)
                      ..++.++++..++.++-
T Consensus       241 ~~~~~l~~~G~iv~~G~  257 (341)
T cd08237         241 QIIDYIRPQGTIGLMGV  257 (341)
T ss_pred             HHHHhCcCCcEEEEEee
Confidence            56778899988887763

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK10537 voltage-gated potassium channel; Provisional

Probab=93.49  E-value=0.18  Score=48.02  Aligned_cols=83  Identities=8%  Similarity=-0.021  Sum_probs=52.2

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC---CCcc-------cccCHHH-hhcCCCEEEEeccCChhhhhc
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG---VSYP-------FYANVSG-LAADSDVLIVCCALTEETHHM  216 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~---~~~~-------~~~~l~e-~l~~aDiV~~~lp~~~~t~~~  216 (286)
                      ..++-|+|+|.+|+.+++.|++.|.++++.+......   .+..       ..+.|++ =+++|+.|+++.+.+.++..+
T Consensus       240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~i  319 (393)
T PRK10537        240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAFV  319 (393)
T ss_pred             CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHH
Confidence            4579999999999999999999898887776542211   1111       1122222 257899998888765554433


Q ss_pred             ccHHHHhcCCCCcEEE
Q 043239          217 INKDVMTALGKEGVII  232 (286)
Q Consensus       217 i~~~~l~~mk~g~ilv  232 (286)
                      +  ...+.+.|...+|
T Consensus       320 v--L~ar~l~p~~kII  333 (393)
T PRK10537        320 V--LAAKEMSSDVKTV  333 (393)
T ss_pred             H--HHHHHhCCCCcEE
Confidence            3  3344555654333

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=93.46  E-value=0.24  Score=45.20  Aligned_cols=62  Identities=24%  Similarity=0.209  Sum_probs=44.5

Q ss_pred             CCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC-------------C-------cccccCHHHhhcCCCEEEE
Q 043239          147 GGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------------S-------YPFYANVSGLAADSDVLIV  205 (286)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------------~-------~~~~~~l~e~l~~aDiV~~  205 (286)
                      .|+++.|.| .|.||+.+++.|...|++|.+..|+.....             .       .....+++++++..|+|+.
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih   83 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH   83 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence            378999998 599999999999999999987766543210             0       1112345677888998877


Q ss_pred             ecc
Q 043239          206 CCA  208 (286)
Q Consensus       206 ~lp  208 (286)
                      +..
T Consensus        84 ~A~   86 (325)
T PLN02989         84 TAS   86 (325)
T ss_pred             eCC
Confidence            653

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=93.45  E-value=0.32  Score=45.46  Aligned_cols=80  Identities=13%  Similarity=0.216  Sum_probs=49.8

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCCC-EEEEECCCCCCC---C----Cc----------c--c--ccCHHHhhcCCCEEEE
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFGC-SIAYTSRKKKPG---V----SY----------P--F--YANVSGLAADSDVLIV  205 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~---~----~~----------~--~--~~~l~e~l~~aDiV~~  205 (286)
                      .+|+|+| .|.+|+.+++.|..+.. ++.++.++....   .    +.          .  .  ..+.+ .+.++|+|+.
T Consensus         4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~DvVf~   82 (349)
T PRK08664          4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPE-AVDDVDIVFS   82 (349)
T ss_pred             cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHH-HhcCCCEEEE
Confidence            5899998 89999999999987644 777663322111   0    01          0  0  11333 4478999999


Q ss_pred             eccCChhhhhcccHHHHhcC-CCCcEEEEcC
Q 043239          206 CCALTEETHHMINKDVMTAL-GKEGVIINVG  235 (286)
Q Consensus       206 ~lp~~~~t~~~i~~~~l~~m-k~g~ilvn~s  235 (286)
                      ++|.... .     +..+.+ +.|..+||.+
T Consensus        83 a~p~~~s-~-----~~~~~~~~~G~~vIDls  107 (349)
T PRK08664         83 ALPSDVA-G-----EVEEEFAKAGKPVFSNA  107 (349)
T ss_pred             eCChhHH-H-----HHHHHHHHCCCEEEECC
Confidence            9985422 2     222222 4577778876

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=93.43  E-value=0.2  Score=46.10  Aligned_cols=59  Identities=15%  Similarity=0.278  Sum_probs=42.3

Q ss_pred             CEEEEEcCChHHHHHHHHhccCC--CEEEEECCCCCCCCCc---------------cccc-CHHHhhcCCCEEEEec
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFG--CSIAYTSRKKKPGVSY---------------PFYA-NVSGLAADSDVLIVCC  207 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g--~~V~~~~r~~~~~~~~---------------~~~~-~l~e~l~~aDiV~~~l  207 (286)
                      ++|+|||.|.+|+++|-.|...+  -++..+|...+...+.               .... .-.+.+++||+|+++.
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA   77 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA   77 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence            48999999999999999996544  3788999885443310               0111 1146789999999986

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.39  E-value=0.12  Score=50.29  Aligned_cols=109  Identities=16%  Similarity=0.208  Sum_probs=67.4

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------Ccccc--cCHHHhhcCCCEEEEeccCCh
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------SYPFY--ANVSGLAADSDVLIVCCALTE  211 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------~~~~~--~~l~e~l~~aDiV~~~lp~~~  211 (286)
                      ..+.+++|.|+|.|.+|.++|+.|+..|++|++++++.....          +....  ... +....+|+|+++.-..+
T Consensus        12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~-~~~~~~D~Vv~s~Gi~~   90 (480)
T PRK01438         12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGP-TLPEDTDLVVTSPGWRP   90 (480)
T ss_pred             cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc-cccCCCCEEEECCCcCC
Confidence            357789999999999999999999999999999986543211          11111  111 13456899988753222


Q ss_pred             hhh----------hcccH-HHH-hcCCC----CcEEEEcCCCcccCHHHHHHHHHhCC
Q 043239          212 ETH----------HMINK-DVM-TALGK----EGVIINVGRGALIDEKELVHFLVRGS  253 (286)
Q Consensus       212 ~t~----------~~i~~-~~l-~~mk~----g~ilvn~srg~~vd~~al~~al~~~~  253 (286)
                      .+.          .++.+ +.+ ..+.+    ..+-|-=+.|......-+...|+...
T Consensus        91 ~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g  148 (480)
T PRK01438         91 DAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAG  148 (480)
T ss_pred             CCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcC
Confidence            211          12222 222 33422    13444446888888888888887643

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=93.37  E-value=0.14  Score=47.57  Aligned_cols=65  Identities=18%  Similarity=0.181  Sum_probs=46.7

Q ss_pred             cccCCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC----------Ccc-------cccCHHHhhcCCCEEE
Q 043239          143 GSTLGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------SYP-------FYANVSGLAADSDVLI  204 (286)
Q Consensus       143 ~~~l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------~~~-------~~~~l~e~l~~aDiV~  204 (286)
                      +++-++++|.|.| .|-||+.+++.|...|++|++.+|+.....          ...       ....+.+++++.|+|+
T Consensus         5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   84 (353)
T PLN02896          5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVF   84 (353)
T ss_pred             ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence            5677899999999 699999999999999999998777543210          011       1123556677889876


Q ss_pred             Eec
Q 043239          205 VCC  207 (286)
Q Consensus       205 ~~l  207 (286)
                      -+.
T Consensus        85 h~A   87 (353)
T PLN02896         85 HVA   87 (353)
T ss_pred             ECC
Confidence            654

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=93.34  E-value=0.24  Score=45.67  Aligned_cols=88  Identities=16%  Similarity=0.222  Sum_probs=56.0

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccCCC--EEEEECCCCCCCC-------C---ccc--c---cCHHHhhcCCCEEEEeccCC
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPFGC--SIAYTSRKKKPGV-------S---YPF--Y---ANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~-------~---~~~--~---~~l~e~l~~aDiV~~~lp~~  210 (286)
                      ++|+|||. |.+|..+|-.|...|.  ++..+|.. ....       .   ...  .   .++.+.+++||+|+++.-..
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~   79 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVP   79 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCC
Confidence            48999999 9999999999987775  78888876 2111       0   111  1   23457899999999875431


Q ss_pred             --h-hhhhc-c--c----HH---HHhcCCCCcEEEEcCCC
Q 043239          211 --E-ETHHM-I--N----KD---VMTALGKEGVIINVGRG  237 (286)
Q Consensus       211 --~-~t~~~-i--~----~~---~l~~mk~g~ilvn~srg  237 (286)
                        + +++.- +  |    ++   .+..-.|.+++++++..
T Consensus        80 ~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP  119 (310)
T cd01337          80 RKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP  119 (310)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence              1 11211 1  1    11   22233688999999655

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05884 short chain dehydrogenase; Provisional

Probab=93.33  E-value=0.15  Score=44.07  Aligned_cols=33  Identities=15%  Similarity=0.287  Sum_probs=28.7

Q ss_pred             EEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          150 RVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       150 ~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      ++.|.|. |.||+.+++.|...|++|+..+|+.+
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~   35 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRD   35 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5778875 89999999999999999998888654

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=93.26  E-value=0.18  Score=44.59  Aligned_cols=36  Identities=28%  Similarity=0.384  Sum_probs=30.9

Q ss_pred             cCCCCEEEEEcC---ChHHHHHHHHhccCCCEEEEECCC
Q 043239          145 TLGGKRVGIVGL---GSIGSEVAKRLVPFGCSIAYTSRK  180 (286)
Q Consensus       145 ~l~g~~vgIiG~---G~iG~~~A~~l~~~g~~V~~~~r~  180 (286)
                      ++.||++.|.|.   +.||.++|+.|...|++|++..++
T Consensus         3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~   41 (258)
T PRK07370          3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLP   41 (258)
T ss_pred             ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence            467999999997   489999999999999999776554

>PRK12937 short chain dehydrogenase; Provisional

Probab=93.25  E-value=0.36  Score=41.76  Aligned_cols=35  Identities=29%  Similarity=0.395  Sum_probs=30.3

Q ss_pred             CCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCC
Q 043239          146 LGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRK  180 (286)
Q Consensus       146 l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~  180 (286)
                      +.++++.|.| .|.+|+.+|+.|...|++|+...++
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~   38 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAG   38 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence            6788999998 5999999999999999998776554

>PRK08374 homoserine dehydrogenase; Provisional

Probab=93.22  E-value=0.56  Score=43.70  Aligned_cols=100  Identities=17%  Similarity=0.268  Sum_probs=58.3

Q ss_pred             CEEEEEcCChHHHHHHHHhcc--------CC--CEEEE-ECCCCCC--CCCc---------------cc--------ccC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVP--------FG--CSIAY-TSRKKKP--GVSY---------------PF--------YAN  192 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~--------~g--~~V~~-~~r~~~~--~~~~---------------~~--------~~~  192 (286)
                      .+|+|+|+|.+|+.+++.|..        +|  .+|.+ .+++...  ..+.               ..        ..+
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~   82 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS   82 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence            489999999999999998876        56  45543 3443211  0010               00        115


Q ss_pred             HHHhh--cCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHhCC
Q 043239          193 VSGLA--ADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALI-DEKELVHFLVRGS  253 (286)
Q Consensus       193 l~e~l--~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~v-d~~al~~al~~~~  253 (286)
                      +++++  .++|+|+-+.+. +....    -....++.|.-+|-...|.+- ..+.|.+..++++
T Consensus        83 ~~ell~~~~~DVvVd~t~~-~~a~~----~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~  141 (336)
T PRK08374         83 PEEIVEEIDADIVVDVTND-KNAHE----WHLEALKEGKSVVTSNKPPIAFHYDELLDLANERN  141 (336)
T ss_pred             HHHHHhcCCCCEEEECCCc-HHHHH----HHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcC
Confidence            67777  479999877642 22222    233345677767766555332 4556666555544

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=93.20  E-value=0.19  Score=44.72  Aligned_cols=57  Identities=23%  Similarity=0.257  Sum_probs=41.9

Q ss_pred             EEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCCCcc-------cccCHHHhhcCCCEEEEecc
Q 043239          152 GIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYP-------FYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       152 gIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~-------~~~~l~e~l~~aDiV~~~lp  208 (286)
                      .|.| .|.||+.+++.|...|++|++.+|+........       ......+.+.++|+|+.+..
T Consensus         2 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~   66 (292)
T TIGR01777         2 LITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAG   66 (292)
T ss_pred             EEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCC
Confidence            4666 699999999999999999999998776532110       01344567788999887764

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.19  E-value=0.51  Score=45.48  Aligned_cols=105  Identities=16%  Similarity=0.191  Sum_probs=65.7

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC---------Ccccc---cCHHHhhcCCCEEEEe--ccCC-hh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV---------SYPFY---ANVSGLAADSDVLIVC--CALT-EE  212 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~---------~~~~~---~~l~e~l~~aDiV~~~--lp~~-~~  212 (286)
                      +-+++|+|+|..|.++|+.|...|++|.++|.......         +....   .+ .+.+.++|+|+..  +|.+ +.
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~-~~~~~~~d~vV~sp~i~~~~p~   84 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFD-CELLVQASEIIISPGLALDTPA   84 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCC-hHHhcCCCEEEECCCCCCCCHH
Confidence            45899999999999999999999999999997543210         11111   12 2446689988775  2222 21


Q ss_pred             hh-------hcccH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 043239          213 TH-------HMINK-DVM-TALGKEGVIINVGRGALIDEKELVHFLVRGS  253 (286)
Q Consensus       213 t~-------~~i~~-~~l-~~mk~g~ilvn~srg~~vd~~al~~al~~~~  253 (286)
                      ..       .++.+ +.+ ..++...+-|-=+.|......-+...|+..+
T Consensus        85 ~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g  134 (448)
T PRK03803         85 LRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAG  134 (448)
T ss_pred             HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcC
Confidence            11       12322 233 2233334445556888888888888887643

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=93.13  E-value=0.2  Score=46.31  Aligned_cols=37  Identities=27%  Similarity=0.289  Sum_probs=32.5

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          146 LGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      ++|++|.|.|. |-||+.+++.|...|++|++.+|+..
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~   39 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPP   39 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCc
Confidence            46789999994 99999999999999999999887654

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=93.10  E-value=1  Score=42.75  Aligned_cols=91  Identities=16%  Similarity=0.242  Sum_probs=65.4

Q ss_pred             CcccCCCCEEEEEcCC---h-------HHHHHHHHhccCCCEEEEECCCCCCCC----Cc-ccccCHHHhhcCCCEEEEe
Q 043239          142 LGSTLGGKRVGIVGLG---S-------IGSEVAKRLVPFGCSIAYTSRKKKPGV----SY-PFYANVSGLAADSDVLIVC  206 (286)
Q Consensus       142 ~~~~l~g~~vgIiG~G---~-------iG~~~A~~l~~~g~~V~~~~r~~~~~~----~~-~~~~~l~e~l~~aDiV~~~  206 (286)
                      .++.+++.+|+++|+-   .       =...+.+.+...|.+|.+||+..+...    +. ....++++.++++|+|++.
T Consensus       316 ~~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l~~~g~~v~~~DP~v~~~~~~~~~~~~~~~~~e~al~~~D~vVi~  395 (436)
T COG0677         316 AGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGEVLVYDPYVKELPTREDGEGVTLAILEEALKDADAVVIA  395 (436)
T ss_pred             cCCCCcCceEEEEEeeecCCCcccccCchHHHHHHHHHhCCeEEEECCCCCcchhhhhccccchhhHHHHhccCCEEEEE
Confidence            4567899999999974   3       245788999999999999999776532    21 1247889999999999988


Q ss_pred             ccCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 043239          207 CALTEETHHMINKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       207 lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg  237 (286)
                      +- . +....++.+.+...  ..++||+ |+
T Consensus       396 tD-H-~~fk~id~~~i~~~--~~vivDt-rn  421 (436)
T COG0677         396 TD-H-SEFKEIDYEAIGKE--AKVIVDT-RN  421 (436)
T ss_pred             ec-c-HHhhcCCHHHhccC--CcEEEEC-cc
Confidence            53 2 22224677777654  5688887 44

>PRK08265 short chain dehydrogenase; Provisional

Probab=93.05  E-value=0.35  Score=42.73  Aligned_cols=38  Identities=32%  Similarity=0.390  Sum_probs=33.9

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      +++++++.|.|. |.||+.+|+.|...|++|++.+|+.+
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD   41 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478899999985 89999999999999999999988754

>PRK06196 oxidoreductase; Provisional

Probab=93.01  E-value=0.19  Score=45.84  Aligned_cols=38  Identities=24%  Similarity=0.418  Sum_probs=33.5

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      .+.|+++.|.|. |.||..+|+.|...|++|++.+|+.+
T Consensus        23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~   61 (315)
T PRK06196         23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD   61 (315)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            467899999996 88999999999999999999888754

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.00  E-value=0.42  Score=42.18  Aligned_cols=37  Identities=32%  Similarity=0.436  Sum_probs=32.7

Q ss_pred             cCCCCEEEEEcCC---hHHHHHHHHhccCCCEEEEECCCC
Q 043239          145 TLGGKRVGIVGLG---SIGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       145 ~l~g~~vgIiG~G---~iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      ++.||++.|.|.+   .||.++|+.|...|++|++.+|+.
T Consensus         7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~   46 (258)
T PRK07533          7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND   46 (258)
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence            4789999999986   699999999999999998887764

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=92.95  E-value=0.3  Score=44.86  Aligned_cols=85  Identities=24%  Similarity=0.314  Sum_probs=57.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc---cc--C-HHHhhcCCCEEEEeccCChhhhh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF---YA--N-VSGLAADSDVLIVCCALTEETHH  215 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~---~~--~-l~e~l~~aDiV~~~lp~~~~t~~  215 (286)
                      .|.++.|.|.|.+|..+++.++.+|.+|++.+++.+...     +...   ..  + ..+.-...|+++.+.+..     
T Consensus       169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~-----  243 (337)
T cd05283         169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSAS-----  243 (337)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCc-----
Confidence            467999999999999999999999999988887654321     1110   11  1 112235679998887632     


Q ss_pred             cccHHHHhcCCCCcEEEEcCC
Q 043239          216 MINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       216 ~i~~~~l~~mk~g~ilvn~sr  236 (286)
                      ......++.++++..+++++.
T Consensus       244 ~~~~~~~~~l~~~G~~v~~g~  264 (337)
T cd05283         244 HDLDPYLSLLKPGGTLVLVGA  264 (337)
T ss_pred             chHHHHHHHhcCCCEEEEEec
Confidence            112456777788888887764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>PRK14852 hypothetical protein; Provisional

Probab=92.90  E-value=0.16  Score=53.30  Aligned_cols=36  Identities=28%  Similarity=0.346  Sum_probs=31.4

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSR  179 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r  179 (286)
                      ..|++++|+|+|+|.+|..+++.|...|. ++...|.
T Consensus       328 ~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~  364 (989)
T PRK14852        328 RRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADF  364 (989)
T ss_pred             HHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcC
Confidence            35899999999999999999999999988 6666663

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=92.89  E-value=0.67  Score=44.02  Aligned_cols=98  Identities=15%  Similarity=0.164  Sum_probs=58.5

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccCCC-E------EEEE--CCCCCCCCC---------------cccccCHHHhhcCCCEE
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPFGC-S------IAYT--SRKKKPGVS---------------YPFYANVSGLAADSDVL  203 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~g~-~------V~~~--~r~~~~~~~---------------~~~~~~l~e~l~~aDiV  203 (286)
                      .+|+|||. |.+|..+|-.+...|. .      +..+  |+..+...+               .....+-.+.+++||+|
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIV  124 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWA  124 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEE
Confidence            48999999 9999999999876554 2      3334  665554321               01112345788999999


Q ss_pred             EEeccCC--h-hhh--------hccc---HHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 043239          204 IVCCALT--E-ETH--------HMIN---KDVMTALGKEGVIINVGRGALIDEKELVHF  248 (286)
Q Consensus       204 ~~~lp~~--~-~t~--------~~i~---~~~l~~mk~g~ilvn~srg~~vd~~al~~a  248 (286)
                      +++.-..  + +++        .++.   ...-..-++.+++|.++  .++|.-+.+-+
T Consensus       125 VitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs--NPvDv~t~v~~  181 (387)
T TIGR01757       125 LLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG--NPCNTNALIAM  181 (387)
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC--CcHHHHHHHHH
Confidence            9974321  1 111        1111   11222234788999886  66666555543

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PRK08324 short chain dehydrogenase; Validated

Probab=92.88  E-value=0.17  Score=51.66  Aligned_cols=40  Identities=30%  Similarity=0.482  Sum_probs=35.2

Q ss_pred             ccCCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCC
Q 043239          144 STLGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       144 ~~l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      ..+.|+++.|.| .|.||..+++.|...|++|++.+|+.+.
T Consensus       418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~  458 (681)
T PRK08324        418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEA  458 (681)
T ss_pred             cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHH
Confidence            457899999999 5999999999999999999999987643

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=92.81  E-value=0.29  Score=45.75  Aligned_cols=83  Identities=20%  Similarity=0.233  Sum_probs=57.5

Q ss_pred             EEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC------Ccccc----c-CH----HHhh--cCCCEEEEeccCCh
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV------SYPFY----A-NV----SGLA--ADSDVLIVCCALTE  211 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~------~~~~~----~-~l----~e~l--~~aDiV~~~lp~~~  211 (286)
                      ++.|+|.|.||...+..++.+|. +|++.|+++++..      +....    . +.    .++-  ..+|+++-|.. ++
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-~~  249 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-SP  249 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-CH
Confidence            99999999999999999999997 6788888776532      11111    1 11    1222  24999999876 22


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCCC
Q 043239          212 ETHHMINKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       212 ~t~~~i~~~~l~~mk~g~ilvn~srg  237 (286)
                      .    .-.+.+..++++..++.+|-.
T Consensus       250 ~----~~~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         250 P----ALDQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             H----HHHHHHHHhcCCCEEEEEecc
Confidence            2    124567778899888888744

>PRK06398 aldose dehydrogenase; Validated

Probab=92.76  E-value=0.53  Score=41.49  Aligned_cols=39  Identities=26%  Similarity=0.274  Sum_probs=34.1

Q ss_pred             cCCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCC
Q 043239          145 TLGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       145 ~l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      ++.|+++.|.| .|.||..+|+.|...|++|+..+|+...
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~   42 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS   42 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc
Confidence            47899999998 4689999999999999999998887644

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=92.74  E-value=0.11  Score=44.72  Aligned_cols=37  Identities=38%  Similarity=0.606  Sum_probs=32.6

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRK  180 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~  180 (286)
                      +.|++.+|.|+|+|.+|..+++.|...|. +++.+|..
T Consensus        15 ~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485          15 NKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             HHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            45889999999999999999999999998 58777754

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.70  E-value=0.29  Score=42.51  Aligned_cols=39  Identities=28%  Similarity=0.491  Sum_probs=34.1

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCC
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      ++.++++.|+|. |.+|..+++.|...|++|++.+|+...
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~   41 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEA   41 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            367889999985 899999999999999999999997643

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=92.67  E-value=0.16  Score=46.54  Aligned_cols=84  Identities=19%  Similarity=0.321  Sum_probs=53.3

Q ss_pred             EEcCChHHHHHHHHhccCCC--EEEEECCCCCCCCC---------------cccccCHHHhhcCCCEEEEeccCCh---h
Q 043239          153 IVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGVS---------------YPFYANVSGLAADSDVLIVCCALTE---E  212 (286)
Q Consensus       153 IiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~~---------------~~~~~~l~e~l~~aDiV~~~lp~~~---~  212 (286)
                      |||.|.+|..+|..|...+.  ++..+|...+...+               .....+-.+.+++||+|+++.-...   .
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~   80 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGE   80 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCC
Confidence            68999999999999987665  78999987654321               1111233578899999999754211   1


Q ss_pred             hh--------hcccH--HHHhcCCCCcEEEEcCC
Q 043239          213 TH--------HMINK--DVMTALGKEGVIINVGR  236 (286)
Q Consensus       213 t~--------~~i~~--~~l~~mk~g~ilvn~sr  236 (286)
                      ++        .++.+  ..+....|.+++++++.
T Consensus        81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN  114 (299)
T TIGR01771        81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATN  114 (299)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            11        11110  12333468899999863

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK08264 short chain dehydrogenase; Validated

Probab=92.67  E-value=0.24  Score=42.83  Aligned_cols=39  Identities=23%  Similarity=0.382  Sum_probs=34.1

Q ss_pred             cCCCCEEEEEc-CChHHHHHHHHhccCCC-EEEEECCCCCC
Q 043239          145 TLGGKRVGIVG-LGSIGSEVAKRLVPFGC-SIAYTSRKKKP  183 (286)
Q Consensus       145 ~l~g~~vgIiG-~G~iG~~~A~~l~~~g~-~V~~~~r~~~~  183 (286)
                      ++.++++.|+| .|.+|+.+|+.|...|+ +|+..+|+.++
T Consensus         3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~   43 (238)
T PRK08264          3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPES   43 (238)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhh
Confidence            46788999998 59999999999999999 99988887654

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=92.65  E-value=0.37  Score=43.88  Aligned_cols=62  Identities=23%  Similarity=0.224  Sum_probs=45.1

Q ss_pred             CCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC-------------C-------cccccCHHHhhcCCCEEEE
Q 043239          147 GGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------------S-------YPFYANVSGLAADSDVLIV  205 (286)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------------~-------~~~~~~l~e~l~~aDiV~~  205 (286)
                      .|++|.|.| .|.||+.+++.|...|++|.+..|+.....             .       .....+++++++.+|+|+.
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih   83 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFH   83 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEE
Confidence            578999998 699999999999999999987665543210             0       0112356778888998877


Q ss_pred             ecc
Q 043239          206 CCA  208 (286)
Q Consensus       206 ~lp  208 (286)
                      +..
T Consensus        84 ~A~   86 (322)
T PLN02986         84 TAS   86 (322)
T ss_pred             eCC
Confidence            653

>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]

Probab=92.64  E-value=0.095  Score=46.92  Aligned_cols=101  Identities=15%  Similarity=0.146  Sum_probs=66.6

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCC---EEEEECCCCCCCC---------------CcccccCHHHhhcCCCEEEEeccCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGC---SIAYTSRKKKPGV---------------SYPFYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~---~V~~~~r~~~~~~---------------~~~~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      ..+.|+|.|...-......-+.-+   +|..|+|+.+.+.               ....+.+++++++.+|||+.+++.+
T Consensus       139 ~vL~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atlst  218 (333)
T KOG3007|consen  139 CVLTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLST  218 (333)
T ss_pred             eEEEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEeccccC
Confidence            357899999998887775443322   7999999876432               2335678999999999999998755


Q ss_pred             hhhhhcccHH---------------------HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          211 EETHHMINKD---------------------VMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       211 ~~t~~~i~~~---------------------~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      +   .++-.+                     --..|+.+.+|||.--+.+....+|++.+.+|
T Consensus       219 e---PilfgewlkpgthIdlVGsf~p~mhEcDdelIq~a~vfVDsre~aL~EsGell~~~~~g  278 (333)
T KOG3007|consen  219 E---PILFGEWLKPGTHIDLVGSFKPVMHECDDELIQSACVFVDSREHALLESGELLDSNIAG  278 (333)
T ss_pred             C---ceeeeeeecCCceEeeeccCCchHHHHhHHHhhhheEEEecchHHhhhhhhhccccccC
Confidence            3   332111                     11224556677776666666666666666655

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.53  E-value=0.3  Score=42.95  Aligned_cols=36  Identities=28%  Similarity=0.510  Sum_probs=32.4

Q ss_pred             cCCCCEEEEEcCC---hHHHHHHHHhccCCCEEEEECCC
Q 043239          145 TLGGKRVGIVGLG---SIGSEVAKRLVPFGCSIAYTSRK  180 (286)
Q Consensus       145 ~l~g~~vgIiG~G---~iG~~~A~~l~~~g~~V~~~~r~  180 (286)
                      .+.||++.|.|.+   .||+++|+.|...|++|+..+|+
T Consensus         4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~   42 (252)
T PRK06079          4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN   42 (252)
T ss_pred             ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence            3789999999985   79999999999999999988776

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=92.49  E-value=0.32  Score=44.80  Aligned_cols=85  Identities=18%  Similarity=0.241  Sum_probs=56.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCH-HHhhcCCCEEEEeccCChhhhhcccHH
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANV-SGLAADSDVLIVCCALTEETHHMINKD  220 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l-~e~l~~aDiV~~~lp~~~~t~~~i~~~  220 (286)
                      .|.+|.|.|.|.+|...++.++..|.+|++.+++.++..     ++...-+. ++.-...|+++.+.... .   . -..
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~---~-~~~  239 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G---L-VPP  239 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H---H-HHH
Confidence            478999999999999999999999999988887765422     22111111 11112367766654421 1   2 245


Q ss_pred             HHhcCCCCcEEEEcCC
Q 043239          221 VMTALGKEGVIINVGR  236 (286)
Q Consensus       221 ~l~~mk~g~ilvn~sr  236 (286)
                      .++.++++..++.++.
T Consensus       240 ~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       240 ALEALDRGGVLAVAGI  255 (329)
T ss_pred             HHHhhCCCcEEEEEec
Confidence            6778889988888764

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=92.48  E-value=0.3  Score=44.81  Aligned_cols=86  Identities=22%  Similarity=0.318  Sum_probs=57.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCE-EEEECCCCCCCC-----Cccc---c--cC---HHHhhc--CCCEEEEeccCC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKKPGV-----SYPF---Y--AN---VSGLAA--DSDVLIVCCALT  210 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~-V~~~~r~~~~~~-----~~~~---~--~~---l~e~l~--~aDiV~~~lp~~  210 (286)
                      .|.+|.|+|.|.+|...++.++.+|.+ |++.+++.++..     +...   .  .+   +.++..  ..|+|+-+....
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~  242 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNT  242 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCH
Confidence            488999999999999999999999998 988887654321     1110   1  11   222332  478888776522


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCCC
Q 043239          211 EETHHMINKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       211 ~~t~~~i~~~~l~~mk~g~ilvn~srg  237 (286)
                       .   . ....+..++++..++.++..
T Consensus       243 -~---~-~~~~~~~l~~~G~~v~~g~~  264 (339)
T cd08239         243 -A---A-RRLALEAVRPWGRLVLVGEG  264 (339)
T ss_pred             -H---H-HHHHHHHhhcCCEEEEEcCC
Confidence             1   1 13456778888888877643

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.47  E-value=0.21  Score=44.21  Aligned_cols=37  Identities=30%  Similarity=0.396  Sum_probs=32.7

Q ss_pred             cCCCCEEEEEcC---ChHHHHHHHHhccCCCEEEEECCCC
Q 043239          145 TLGGKRVGIVGL---GSIGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       145 ~l~g~~vgIiG~---G~iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      .+.|+++.|.|.   +.||.++|+.|...|++|+..+|+.
T Consensus         4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~   43 (256)
T PRK07889          4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR   43 (256)
T ss_pred             cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc
Confidence            478899999996   7999999999999999999888753

>PRK08862 short chain dehydrogenase; Provisional

Probab=92.42  E-value=0.16  Score=44.30  Aligned_cols=39  Identities=13%  Similarity=0.337  Sum_probs=33.7

Q ss_pred             cCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCC
Q 043239          145 TLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       145 ~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      +++|+++.|.|.+. ||.++|+.|...|++|...+|+.+.
T Consensus         2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~   41 (227)
T PRK08862          2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSA   41 (227)
T ss_pred             CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            46889999999765 9999999999999999999887543

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.41  E-value=0.25  Score=43.98  Aligned_cols=35  Identities=31%  Similarity=0.539  Sum_probs=31.6

Q ss_pred             CCCCEEEEEcCC---hHHHHHHHHhccCCCEEEEECCC
Q 043239          146 LGGKRVGIVGLG---SIGSEVAKRLVPFGCSIAYTSRK  180 (286)
Q Consensus       146 l~g~~vgIiG~G---~iG~~~A~~l~~~g~~V~~~~r~  180 (286)
                      +.|+++.|.|.+   .||.++|+.|...|++|++.+|+
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~   41 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN   41 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence            688999999987   59999999999999999887775

>PRK12939 short chain dehydrogenase; Provisional

Probab=92.34  E-value=0.18  Score=43.71  Aligned_cols=38  Identities=26%  Similarity=0.477  Sum_probs=33.1

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      .+.++++.|.|. |.||+.+|+.|...|++|++.+|+.+
T Consensus         4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~   42 (250)
T PRK12939          4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAA   42 (250)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            467899999985 99999999999999999998887643

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=92.31  E-value=0.73  Score=42.85  Aligned_cols=95  Identities=16%  Similarity=0.228  Sum_probs=57.2

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCC-CEEEEECCCC-CCCC------Ccc-----c--ccCHHHh-hcCCCEEEEeccCCh
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFG-CSIAYTSRKK-KPGV------SYP-----F--YANVSGL-AADSDVLIVCCALTE  211 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g-~~V~~~~r~~-~~~~------~~~-----~--~~~l~e~-l~~aDiV~~~lp~~~  211 (286)
                      .+|+|+| -|--|.++.++|...- .++..++.+. ....      ...     .  ..+.+++ ..+||+|++|+|...
T Consensus         3 ~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg~   82 (349)
T COG0002           3 IKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHGV   82 (349)
T ss_pred             ceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCchh
Confidence            5899998 5889999999999864 3665444333 2111      011     0  1123333 456999999999653


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 043239          212 ETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHF  248 (286)
Q Consensus       212 ~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~a  248 (286)
                      + ..++ .+.   +..|..+||.|-.--++..++++.
T Consensus        83 s-~~~v-~~l---~~~g~~VIDLSadfR~~d~~~ye~  114 (349)
T COG0002          83 S-AELV-PEL---LEAGCKVIDLSADFRLKDPEVYEK  114 (349)
T ss_pred             H-HHHH-HHH---HhCCCeEEECCcccccCCHHHHHH
Confidence            3 2222 122   245777999997766665555543

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=92.30  E-value=0.47  Score=44.22  Aligned_cols=82  Identities=13%  Similarity=0.182  Sum_probs=48.7

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCC-CEEEEE-CCCCCCCC------C------c----c--cccCH-HHhhcCCCEEEEe
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFG-CSIAYT-SRKKKPGV------S------Y----P--FYANV-SGLAADSDVLIVC  206 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g-~~V~~~-~r~~~~~~------~------~----~--~~~~l-~e~l~~aDiV~~~  206 (286)
                      ++|+|+| .|.+|+.+++.|.... +++... +++.....      .      .    .  .+.++ .+.+.++|+|+++
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a   80 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA   80 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence            4799999 5999999999998765 577654 43321100      0      0    0  01111 2345889999999


Q ss_pred             ccCChhhhhcccHHHHhcCCCCcEEEEcC
Q 043239          207 CALTEETHHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       207 lp~~~~t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      +|..-. ..+. ...   ++.|..+||.|
T Consensus        81 ~p~~~s-~~~~-~~~---~~~G~~VIDls  104 (341)
T TIGR00978        81 LPSEVA-EEVE-PKL---AEAGKPVFSNA  104 (341)
T ss_pred             CCHHHH-HHHH-HHH---HHCCCEEEECC
Confidence            985422 2222 222   24677777765

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=92.29  E-value=0.47  Score=44.66  Aligned_cols=84  Identities=21%  Similarity=0.370  Sum_probs=53.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCC------CCCccc---ccC---HHHhhcCCCEEEEeccCChhhh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP------GVSYPF---YAN---VSGLAADSDVLIVCCALTEETH  214 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~------~~~~~~---~~~---l~e~l~~aDiV~~~lp~~~~t~  214 (286)
                      .|.+|.|.|.|.+|...++.++.+|.+|++.+++.++      ..+...   ..+   +.+.....|+|+-++.....  
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~~--  255 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHA--  255 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHHH--
Confidence            5889999999999999999999999998887665332      112211   111   22333457888887642111  


Q ss_pred             hcccHHHHhcCCCCcEEEEcC
Q 043239          215 HMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~s  235 (286)
                        + ...++.++++..++.++
T Consensus       256 --~-~~~~~~l~~~G~iv~vG  273 (375)
T PLN02178        256 --L-LPLFSLLKVSGKLVALG  273 (375)
T ss_pred             --H-HHHHHhhcCCCEEEEEc
Confidence              1 23455566676666654

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=92.26  E-value=0.36  Score=45.56  Aligned_cols=80  Identities=21%  Similarity=0.338  Sum_probs=47.5

Q ss_pred             CEEEEEcC-ChHHHHHHH-HhccCCCE---EEEECCCC--CCCCCc-----ccc--cCHHHhhcCCCEEEEeccCChhhh
Q 043239          149 KRVGIVGL-GSIGSEVAK-RLVPFGCS---IAYTSRKK--KPGVSY-----PFY--ANVSGLAADSDVLIVCCALTEETH  214 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~-~l~~~g~~---V~~~~r~~--~~~~~~-----~~~--~~l~e~l~~aDiV~~~lp~~~~t~  214 (286)
                      .+|||||. |.+|+.+.+ .|....+.   +..++.+.  .+...+     ...  .+. +.++++|+++.++|.. .+.
T Consensus         2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~-~~~~~~Divf~a~~~~-~s~   79 (369)
T PRK06598          2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDI-DALKKLDIIITCQGGD-YTN   79 (369)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCCh-hHhcCCCEEEECCCHH-HHH
Confidence            47999995 999999998 55555554   55554432  111111     111  122 3458899999999843 222


Q ss_pred             hcccHHHHhc-CCCC--cEEEEcC
Q 043239          215 HMINKDVMTA-LGKE--GVIINVG  235 (286)
Q Consensus       215 ~~i~~~~l~~-mk~g--~ilvn~s  235 (286)
                           +..+. .+.|  +++||.|
T Consensus        80 -----~~~~~~~~aG~~~~VID~S   98 (369)
T PRK06598         80 -----EVYPKLRAAGWQGYWIDAA   98 (369)
T ss_pred             -----HHHHHHHhCCCCeEEEECC
Confidence                 22222 2456  6788887

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=92.23  E-value=0.22  Score=43.35  Aligned_cols=37  Identities=27%  Similarity=0.394  Sum_probs=33.0

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCC
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      ++.|+++.|.|. |.||..+|+.|...|++|++.+|+.
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~   39 (248)
T TIGR01832         2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE   39 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence            368999999996 7999999999999999999888754

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.22  E-value=0.68  Score=40.93  Aligned_cols=37  Identities=27%  Similarity=0.422  Sum_probs=32.4

Q ss_pred             cCCCCEEEEEcC---ChHHHHHHHHhccCCCEEEEECCCC
Q 043239          145 TLGGKRVGIVGL---GSIGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       145 ~l~g~~vgIiG~---G~iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      .+.||++.|.|.   +.||.++|+.|...|++|+..+|+.
T Consensus         4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~   43 (257)
T PRK08594          4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGE   43 (257)
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcc
Confidence            478999999997   4899999999999999998877653

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=92.21  E-value=0.41  Score=44.61  Aligned_cols=81  Identities=9%  Similarity=0.139  Sum_probs=48.3

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccCCC---EEEEE-CCCCCC-C---CCc-cccc--CHHHhhcCCCEEEEeccCChhhhhc
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPFGC---SIAYT-SRKKKP-G---VSY-PFYA--NVSGLAADSDVLIVCCALTEETHHM  216 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~g~---~V~~~-~r~~~~-~---~~~-~~~~--~l~e~l~~aDiV~~~lp~~~~t~~~  216 (286)
                      .+|+|+|. |.+|+.+.+.|...++   ++... +++... .   .+. ..+.  +..+ ++++|++++++|. .....+
T Consensus         5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~-~~s~~~   82 (336)
T PRK05671          5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGA-AVSRSF   82 (336)
T ss_pred             CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCH-HHHHHH
Confidence            58999995 9999999999996544   33333 222111 0   010 1111  2223 5889999999993 233322


Q ss_pred             ccHHHHhcCCCCcEEEEcC
Q 043239          217 INKDVMTALGKEGVIINVG  235 (286)
Q Consensus       217 i~~~~l~~mk~g~ilvn~s  235 (286)
                      + ...   .+.|..+||.|
T Consensus        83 v-~~~---~~~G~~VIDlS   97 (336)
T PRK05671         83 A-EKA---RAAGCSVIDLS   97 (336)
T ss_pred             H-HHH---HHCCCeEEECc
Confidence            2 122   24688899998

>PRK07825 short chain dehydrogenase; Provisional

Probab=92.20  E-value=0.37  Score=42.70  Aligned_cols=38  Identities=32%  Similarity=0.439  Sum_probs=32.8

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      ++.|+++.|.|. |.||+.+++.|...|++|.+.+|+.+
T Consensus         2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~   40 (273)
T PRK07825          2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEA   40 (273)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHH
Confidence            367889999985 88999999999999999998887653

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=92.18  E-value=0.33  Score=44.02  Aligned_cols=58  Identities=17%  Similarity=0.316  Sum_probs=40.7

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC-CcccccCHHHhhc--CCCEEEEec
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV-SYPFYANVSGLAA--DSDVLIVCC  207 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-~~~~~~~l~e~l~--~aDiV~~~l  207 (286)
                      |+|.|.|. |-||+.+++.|...| +|++.+|...... .......+.++++  +.|+|+-+.
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih~A   62 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHSTDYCGDFSNPEGVAETVRKIRPDVIVNAA   62 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC-CEEEeccccccccCCCCCHHHHHHHHHhcCCCEEEECC
Confidence            47899996 999999999999888 7888887643221 1222334556666  479887654

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=92.03  E-value=0.31  Score=45.58  Aligned_cols=85  Identities=16%  Similarity=0.210  Sum_probs=56.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-----Cccc---c--cCHHH----hhc-CCCEEEEeccCC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-----SYPF---Y--ANVSG----LAA-DSDVLIVCCALT  210 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-----~~~~---~--~~l~e----~l~-~aDiV~~~lp~~  210 (286)
                      .|.+|.|.|.|.+|...++.++..|+ +|++.++++++..     ++..   .  .++.+    +.. ..|+|+-++...
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~  270 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSV  270 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCCh
Confidence            47899999999999999999999999 6888887654421     2111   1  12211    211 479998876422


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCC
Q 043239          211 EETHHMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       211 ~~t~~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                       .+    -...++.++++..++.++-
T Consensus       271 -~~----~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         271 -PA----LETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             -HH----HHHHHHHHhcCCEEEEEcc
Confidence             11    1345667888888888763

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=92.02  E-value=0.41  Score=44.54  Aligned_cols=85  Identities=22%  Similarity=0.282  Sum_probs=56.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC------CCccc---cc---CHHHhhcCCCEEEEeccCChhhh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG------VSYPF---YA---NVSGLAADSDVLIVCCALTEETH  214 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~------~~~~~---~~---~l~e~l~~aDiV~~~lp~~~~t~  214 (286)
                      .|.++.|.|.|.+|..+++.++..|.+|++.+++.++.      .+...   ..   .+.+.....|+++-+++....  
T Consensus       180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~--  257 (357)
T PLN02514        180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHP--  257 (357)
T ss_pred             CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHH--
Confidence            57899999999999999999999999887776554321      12111   11   122333457988887753211  


Q ss_pred             hcccHHHHhcCCCCcEEEEcCC
Q 043239          215 HMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                         ....++.++++..++.++.
T Consensus       258 ---~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        258 ---LEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             ---HHHHHHHhccCCEEEEECC
Confidence               1345677888888888763

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=92.01  E-value=0.21  Score=47.73  Aligned_cols=63  Identities=24%  Similarity=0.354  Sum_probs=46.3

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC--------Cc-------ccccCHHHhhcCCCEEEEec
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV--------SY-------PFYANVSGLAADSDVLIVCC  207 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------~~-------~~~~~l~e~l~~aDiV~~~l  207 (286)
                      +++|+++.|.|. |.||+++++.|...|++|.+.+|+.+...        ..       ....++.+.+.+.|+++.+.
T Consensus       175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnA  253 (406)
T PRK07424        175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINH  253 (406)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECC
Confidence            578999999986 89999999999999999998887653211        00       01123455678899998764

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=91.98  E-value=0.66  Score=42.16  Aligned_cols=84  Identities=20%  Similarity=0.299  Sum_probs=56.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc---ccc--CH-HHhhcCCCEEEEeccCChhhhh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP---FYA--NV-SGLAADSDVLIVCCALTEETHH  215 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~---~~~--~l-~e~l~~aDiV~~~lp~~~~t~~  215 (286)
                      .|.+|.|.|.|.+|+.+++.++..|++|++.+++.++..     +..   ...  +. ...-...|+++-++....    
T Consensus       162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~----  237 (330)
T cd08245         162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA----  237 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH----
Confidence            467999999999999999999999999988887664321     111   000  11 111235788887754211    


Q ss_pred             cccHHHHhcCCCCcEEEEcC
Q 043239          216 MINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       216 ~i~~~~l~~mk~g~ilvn~s  235 (286)
                       ...+.+..|+++..+++++
T Consensus       238 -~~~~~~~~l~~~G~~i~~~  256 (330)
T cd08245         238 -AAEAALGGLRRGGRIVLVG  256 (330)
T ss_pred             -HHHHHHHhcccCCEEEEEC
Confidence             2245677888888888875

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	286
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		8e-43
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		6e-29
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		2e-28
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		7e-21
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		2e-20
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		7e-20
2dbr_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		3e-18
2dbq_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		1e-17
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		6e-15
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		3e-14
3n7u_A	351	Nad-Dependent Formate Dehydrogenase From Higher-Pla		4e-13
3naq_A	357	Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro		5e-13
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		5e-13
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		5e-13
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		6e-13
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		7e-13
4e5m_A	329	Thermostable Phosphite Dehydrogenase E175aA176R IN		1e-12
4e5p_A	332	Thermostable Phosphite Dehydrogenase A176r Variant		1e-12
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		2e-12
4e5k_A	329	Thermostable Phosphite Dehydrogenase In Complex Wit		4e-12
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		4e-12
4e5n_A	330	Thermostable Phosphite Dehydrogenase In Complex Wit		5e-12
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		5e-12
2gug_A	401	Nad-dependent Formate Dehydrogenase From Pseudomona		5e-12
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		1e-11
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		2e-11
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		2e-11
4ebf_A	334	Semet Thermostable Phosphite Dehydrogenase Glu175-A		2e-11
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		2e-11
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		2e-11
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		1e-10
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		2e-10
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		5e-08
3hg7_A	324	Crystal Structure Of D-Isomer Specific 2-Hydroxyaci		2e-07
3gg9_A	352	Crystal Structure Of Putative D-3-Phosphoglycerate		3e-07
3k5p_A	416	Crystal Structure Of Amino Acid-Binding Act: D-Isom		7e-07
1j49_A	333	Insights Into Domain Closure, Substrate Specificity		1e-06
1j4a_A	333	Insights Into Domain Closure, Substrate Specificity		1e-06
3kbo_A	315	2.14 Angstrom Crystal Structure Of Putative Oxidore		2e-06
2w2l_D	348	Crystal Structure Of The Holo Forms Of Rhodotorula		2e-06
2w2k_A	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		2e-06
2w2k_B	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		2e-06
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		3e-06
2j6i_A	364	Candida Boidinii Formate Dehydrogenase (Fdh) C-Term		4e-06
1qp8_A	303	Crystal Structure Of A Putative Formate Dehydrogena		1e-05
2dld_A	337	D-Lactate Dehydrogenase Complexed With Nadh And Oxa		1e-05
2yq4_A	343	Crystal Structure Of D-isomer Specific 2-hydroxyaci		2e-05
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		8e-05
3evt_A	324	Crystal Structure Of Phosphoglycerate Dehydrogenase		8e-05
1psd_A	409	The Allosteric Ligand Site In The Vmax-Type Coopera		6e-04
2p9c_A	410	Crystal Structure Of Serine Bound G336v Mutant Of E		6e-04
2p9g_A	410	Crystal Structure Of Serine Bound G336v,G337v Doubl		7e-04
3oet_A	381	D-Erythronate-4-Phosphate Dehydrogenase Complexed W		7e-04

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score =  170 bits (431), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 94/234 (40%), Positives = 129/234 (55%), Gaps = 3/234 (1%)
Query: 21  LSERFTLLDPLLHSADSTHSFLSRHASSVRAILCXXXXXXXXXXXXXXXXXEIVVGSTAG 80
           L +RF L       A     FL+  A S+RA++                  EIV   + G
Sbjct: 40  LDKRFKLFRYWTQPAQ--RDFLALQAESIRAVVGNSNAGADAELIDALPKLEIVSSFSVG 97
Query: 81  IDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGAY 140
           +D VDL +C  +G+ VTN  +  ++D AD                D++VR G W   G +
Sbjct: 98  LDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAW-KFGDF 156
Query: 141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADS 200
            L +   GKRVGI+GLG IG  VA+R   F C I+Y SR KKP  +Y +Y +V  LA++S
Sbjct: 157 KLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNTNYTYYGSVVELASNS 216
Query: 201 DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
           D+L+V C LT ET H+IN++V+ ALG +GV+IN+GRG  +DE ELV  LV G L
Sbjct: 217 DILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRL 270

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score =  124 bits (311), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 104/185 (56%), Gaps = 10/185 (5%)
Query: 78  TAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDH 137
           +AG D++DL+E  +RGI VT      SE  A++               D+F+R G W  H
Sbjct: 72  SAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESH 131
Query: 138 GAYPLG----STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF---Y 190
                G     +L GK+VGI+G+G+IG  +A+RL+PFG  + Y SR +K  V       Y
Sbjct: 132 AKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKVNVEKELKARY 191
Query: 191 ANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEG-VIINVGRGALIDEKELVHFL 249
            ++  L   SD++I+   LT +T+H+IN++ +  L  EG  ++N+GRGAL+DEK +   +
Sbjct: 192 MDIDELLEKSDIVILALPLTRDTYHIINEERVKKL--EGKYLVNIGRGALVDEKAVTEAI 249
Query: 250 VRGSL 254
            +G L
Sbjct: 250 KQGKL 254

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/182 (37%), Positives = 97/182 (53%)
Query: 73  IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNG 132
           I+  +  G D VDL   RRR I VT      ++D AD                DR VR G
Sbjct: 96  IIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDGDRLVREG 155
Query: 133 LWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYAN 192
            W      PLG +  GKR+G++GLG IG  +A R   FG S+ Y +R    GV +  + +
Sbjct: 156 RWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSVRYWNRSTLSGVDWIAHQS 215
Query: 193 VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
              LA DSDVL VC A +  T ++++  ++ ALG EG+++NV RG ++DE  L+  L  G
Sbjct: 216 PVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSG 275
Query: 253 SL 254
           ++
Sbjct: 276 TI 277

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score = 97.4 bits (241), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 91/188 (48%), Gaps = 5/188 (2%)
Query: 72  EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRN 131
           +++   + GIDH+ L E ++RGI V    +  ++  A+                   V+N
Sbjct: 78  KVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKN 137
Query: 132 GLWPDHGAYPL-GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKKPGVSYPF 189
           G W       L G  L    VGI+GLG IG  +A+RL PFG     YT R+ +P  +  F
Sbjct: 138 GGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEF 197
Query: 190 YA---NVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELV 246
            A   +   LAA SD ++V C+LT  T  + NKD    + +  V IN+ RG ++++ +L 
Sbjct: 198 QAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLY 257
Query: 247 HFLVRGSL 254
             L  G +
Sbjct: 258 QALASGKI 265

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 90/188 (47%), Gaps = 5/188 (2%)
Query: 72  EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRN 131
           +++   + GIDH+ L E ++RGI V    +  ++  A+                   V+N
Sbjct: 76  KVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKN 135
Query: 132 GLWPDHGAYPL-GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKKPGVSYPF 189
           G W       L G  L    VGI+GLG IG  +A+RL PFG     YT R+ +P  +  F
Sbjct: 136 GGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEF 195
Query: 190 YA---NVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELV 246
            A   +   LAA SD ++V C+LT  T  + NKD      +  V IN+ RG ++++ +L 
Sbjct: 196 QAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINISRGDVVNQDDLY 255
Query: 247 HFLVRGSL 254
             L  G +
Sbjct: 256 QALASGKI 263

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score = 94.4 bits (233), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 65/178 (36%), Positives = 97/178 (54%), Gaps = 4/178 (2%)
Query: 78  TAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPD- 136
           + G+DHVDL+  R RGI VT+     +E  AD                  + R+GLW   
Sbjct: 73  SVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAW 132
Query: 137 HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGL 196
           H    LG  L G  +G+VG+G IG  VAKR + FG  + Y +R  KP + YPF  ++  L
Sbjct: 133 HPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKP-LPYPFL-SLEEL 190
Query: 197 AADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
             ++DV+ +   LT ETH ++N++ + A+ +  +++N  RGAL+D + LV  L RG L
Sbjct: 191 LKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEAL-RGHL 247

>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 95/188 (50%), Gaps = 8/188 (4%)
Query: 73  IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNG 132
           IV     G D++D++E  +RGI VTN  +  ++  AD                DRFVR+G
Sbjct: 70  IVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSG 129
Query: 133 LWPD-----HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY 187
            W       H  + LG  + GK +GI+GLG IG  +AKR   F   I Y SR +K  V  
Sbjct: 130 EWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKEEVER 189
Query: 188 PFYAN---VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKE 244
              A    +  L  +SD +++   LT ET+H+IN++ +  + K  ++IN+ RG ++D   
Sbjct: 190 ELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNA 249
Query: 245 LVHFLVRG 252
           LV  L  G
Sbjct: 250 LVKALKEG 257

>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 94/188 (50%), Gaps = 8/188 (4%)
Query: 73  IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNG 132
           IV     G D++D++E  +RGI VTN  +  ++  AD                DRFVR+G
Sbjct: 70  IVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSG 129
Query: 133 LWPD-----HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY 187
            W       H  + LG  + GK +GI+GLG IG  +AKR   F   I Y SR +K  V  
Sbjct: 130 EWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNXRILYYSRTRKEEVER 189
Query: 188 PFYAN---VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKE 244
              A    +  L  +SD +++   LT ET+H+IN++ +    K  ++IN+ RG ++D   
Sbjct: 190 ELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTAILINIARGKVVDTNA 249
Query: 245 LVHFLVRG 252
           LV  L  G
Sbjct: 250 LVKALKEG 257

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 80/184 (43%), Gaps = 10/184 (5%)
Query: 80  GIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGA 139
           G DH+DL  C+ RGI V NA +  +   A+                ++ +R   WP  G 
Sbjct: 77  GFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWP--GW 134
Query: 140 YPL---GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAY-----TSRKKKPGVSYPFYA 191
            PL   G  L  K +GI G GSIG  +AKR   F   I Y      S   +      F+ 
Sbjct: 135 EPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHD 194
Query: 192 NVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVR 251
           ++  L + S    +    T ET +  NK  + +L +  +++N  RG L+D + +V  L  
Sbjct: 195 SLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEA 254
Query: 252 GSLV 255
           G L 
Sbjct: 255 GRLA 258

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 8/178 (4%)
Query: 78  TAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDH 137
           + G DH+D    R  GI V +  +  S+  A+                DR VR+G WP  
Sbjct: 102 SVGYDHIDXAAARSLGIKVLHTPDVLSDACAEIAXLLVLNACRRGYEADRXVRSGSWPGW 161
Query: 138 GAYPL-GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKK-----KPGVSYPFYA 191
           G   L G  L G+R+GI G G IG  +A R   FG +I Y +R +     + G  Y  + 
Sbjct: 162 GPTQLLGXGLTGRRLGIFGXGRIGRAIATRARGFGLAIHYHNRTRLSHALEEGAIY--HD 219
Query: 192 NVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFL 249
            +  L   SD+ ++      E    ++ D +  + +  V+IN+ RG LI++  L+  L
Sbjct: 220 TLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEAL 277

>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 13/187 (6%)
Query: 78  TAGI--DHVDLQECRRRGILVTN-AGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLW 134
           TAGI  DH+DLQ     G+ V    G+       D                ++ V+ G W
Sbjct: 92  TAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVK-GEW 150
Query: 135 PDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSR-------KKKPGVSY 187
              G       L GK +G VG G IG  + +RL PFGC++ Y  R       +K+ G   
Sbjct: 151 NVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAK- 209
Query: 188 PFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVH 247
            F  +++ +    DV+++   LTE+T  M NK+++  L K  +I+N  RGA+++ + +V 
Sbjct: 210 -FVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVD 268
Query: 248 FLVRGSL 254
            +  G +
Sbjct: 269 AVESGHI 275

>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 13/187 (6%)
Query: 78  TAGI--DHVDLQECRRRGILVTN-AGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLW 134
           TAGI  DH+DLQ     G+ V    G+       D                ++ V+ G W
Sbjct: 98  TAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVK-GEW 156
Query: 135 PDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSR-------KKKPGVSY 187
              G       L GK +G VG G IG  + +RL PFGC++ Y  R       +K+ G   
Sbjct: 157 NVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAK- 215
Query: 188 PFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVH 247
            F  +++ +    DV+++   LTE+T  M NK+++  L K  +I+N  RGA+++ + +V 
Sbjct: 216 -FVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVD 274
Query: 248 FLVRGSL 254
            +  G +
Sbjct: 275 AVESGHI 281

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 84/229 (36%), Gaps = 7/229 (3%)
Query: 34  SADSTHSFLSRHASSVRAILCXXXXXXXXXXXXXXXXXEIVVGSTAGI--DHVDLQECRR 91
           S D   S L +H      I+                  ++ +  TAGI  DHVDLQ    
Sbjct: 76  SKDGPDSELEKHLHDAEVIISQPFWPAYLTAERIAKAPKLKLALTAGIGSDHVDLQAAID 135
Query: 92  RGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGAYPLGSTLGGKRV 151
             I V       S   A++                 + RNG W           + G  V
Sbjct: 136 NNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHV 195
Query: 152 GIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGLAADSDVLIVC 206
           G V  G IG  V + L PF   + YT R + P      ++  ++A    +    DV+ + 
Sbjct: 196 GTVAAGRIGLRVLRLLAPFDMHLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTLN 255
Query: 207 CALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV 255
           C L  ET HMIN + +    +   ++N  RG L D   +V  L  G L 
Sbjct: 256 CPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLA 304

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 94/185 (50%), Gaps = 7/185 (3%)
Query: 72  EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRN 131
           +++  +  G+D++D++  + +GI V NA  A S   A+             +  DR +R 
Sbjct: 68  KVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMRE 127
Query: 132 GLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSI----AYTSRKKKPGVSY 187
           G+W    A  +G  L GK +GI+G G IG +VAK     G +I     Y + ++   V+ 
Sbjct: 128 GVWAKKEA--MGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERAKEVNG 185
Query: 188 PFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVH 247
            F  ++  L  +SDV+ +   L E T+H+IN++ +  + K  ++IN  RG ++D   LV 
Sbjct: 186 KF-VDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVK 244
Query: 248 FLVRG 252
            L  G
Sbjct: 245 ALKEG 249

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 84/229 (36%), Gaps = 7/229 (3%)
Query: 34  SADSTHSFLSRHASSVRAILCXXXXXXXXXXXXXXXXXEIVVGSTAGI--DHVDLQECRR 91
           S D   S L +H      I+                  ++ +  TAGI  DHVDLQ    
Sbjct: 75  SKDGPDSELEKHLHDAEVIISQPFWPAYLTAERIAKAPKLKLALTAGIGSDHVDLQAAID 134
Query: 92  RGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGAYPLGSTLGGKRV 151
             I V       S   A++                 + RNG W           + G  V
Sbjct: 135 NNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHV 194
Query: 152 GIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGLAADSDVLIVC 206
           G V  G IG  V + L PF   + YT R + P      ++  ++A    +    DV+ + 
Sbjct: 195 GTVAAGRIGLRVLRLLAPFDMHLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTLN 254
Query: 207 CALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV 255
           C L  ET HMIN + +    +   ++N  RG L D   +V  L  G L 
Sbjct: 255 CPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLA 303

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 5/180 (2%)
Query: 78  TAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDH 137
           + G DH+DL  C+++GILVT+      E  A++              I+  V+  L    
Sbjct: 72  SVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLKRIEDRVKK-LNFSQ 130
Query: 138 GAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYP--FYANVSG 195
            +  L   L    +G++G G IGS VA   + FG  +      K+  +      Y ++  
Sbjct: 131 DSEILARELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCYDVVKREDLKEKGCVYTSLDE 190
Query: 196 LAADSDVLIVCCALTEETHHMINKDVMTALGKEGV-IINVGRGALIDEKELVHFLVRGSL 254
           L  +SDV+ +    T+ETHH IN++ + +L K+GV +IN  RG ++D   L     RG  
Sbjct: 191 LLKESDVISLHVPYTKETHHXINEERI-SLXKDGVYLINTARGKVVDTDALYRAYQRGKF 249

>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 10/182 (5%)
Query: 80  GIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGA 139
           G D+ D+  C  RG+ +T   +  +   A+              + D FVR+G +     
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 136
Query: 140 YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRK-------KKPGVSYPFYAN 192
              G+ L    VG +G+G+IG  +A RL  +G ++ Y +RK       ++ G+       
Sbjct: 137 RFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRLGLRQ---VA 193
Query: 193 VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
            S L A SD +++   L  +T H++N +++  +    +++N  RG+++DE  ++  L RG
Sbjct: 194 CSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERG 253
Query: 253 SL 254
            L
Sbjct: 254 QL 255

>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 10/182 (5%)
Query: 80  GIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGA 139
           G D+ D+  C  RG+ +T   +  +   A+              + D FVR+G +     
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 136
Query: 140 YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRK-------KKPGVSYPFYAN 192
              G+ L    VG +G+G+IG  +A RL  +G ++ Y +RK       ++ G+       
Sbjct: 137 RFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRLGLRQ---VA 193
Query: 193 VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
            S L A SD +++   L  +T H++N +++  +    +++N  RG+++DE  ++  L RG
Sbjct: 194 CSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERG 253
Query: 253 SL 254
            L
Sbjct: 254 QL 255

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 80/187 (42%), Gaps = 9/187 (4%)
Query: 72  EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRN 131
           ++V  +  G+D+VDL+   R+GILV N  N  S   A+                   +++
Sbjct: 91  QVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKD 150
Query: 132 GLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYA 191
           G W       +G+ L GK +GI+GLG IG EVA R+  FG           P VS  F  
Sbjct: 151 GKWERKKF--MGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASF-- 206
Query: 192 NVSGLAADS-----DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELV 246
            V  L  +      D + V   L   T  ++N +      K   ++N  RG ++DE  L+
Sbjct: 207 GVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALL 266
Query: 247 HFLVRGS 253
             L  G 
Sbjct: 267 RALQSGQ 273

>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 86/182 (47%), Gaps = 10/182 (5%)
Query: 80  GIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGA 139
           G D+ D+  C  RG+ +T   +  +   A+              + D FVR+G +     
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP 136
Query: 140 YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAY-------TSRKKKPGVSYPFYAN 192
              G+ L    VG +G+G+IG  +A RL  +G ++ Y       T  +++ G+       
Sbjct: 137 RFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQ---VA 193
Query: 193 VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
            S L A SD +++   L  +T H++N +++  +    +++N  RG+++DE  ++  L RG
Sbjct: 194 CSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERG 253
Query: 253 SL 254
            L
Sbjct: 254 QL 255

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 72/184 (39%), Gaps = 7/184 (3%)
Query: 78  TAGI--DHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWP 135
           TAGI  DHVDLQ    R + V       S   A++                 + R G W 
Sbjct: 119 TAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWN 178
Query: 136 DHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFY 190
                     L    VG V  G IG  V +RL PF   + YT R + P      ++  ++
Sbjct: 179 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWH 238
Query: 191 ANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLV 250
           A    +    DV+ + C L  ET HMIN + +    +   I+N  RG L D   +   L 
Sbjct: 239 ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALE 298
Query: 251 RGSL 254
            G L
Sbjct: 299 SGRL 302

>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 86/182 (47%), Gaps = 10/182 (5%)
Query: 80  GIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGA 139
           G D+ D+  C  RG+ +T   +  +   A+              + D FVR+G +     
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP 136
Query: 140 YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAY-------TSRKKKPGVSYPFYAN 192
              G+ L    VG +G+G+IG  +A RL  +G ++ Y       T  +++ G+       
Sbjct: 137 RFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQ---VA 193
Query: 193 VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
            S L A SD +++   L  +T H++N +++  +    +++N  RG+++DE  ++  L RG
Sbjct: 194 CSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERG 253
Query: 253 SL 254
            L
Sbjct: 254 QL 255

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 72/184 (39%), Gaps = 7/184 (3%)
Query: 78  TAGI--DHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWP 135
           TAGI  DHVDLQ    R + V       S   A++                 + R G W 
Sbjct: 120 TAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWN 179
Query: 136 DHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFY 190
                     L    VG V  G IG  V +RL PF   + YT R + P      ++  ++
Sbjct: 180 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWH 239
Query: 191 ANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLV 250
           A    +    DV+ + C L  ET HMIN + +    +   I+N  RG L D   +   L 
Sbjct: 240 ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALE 299
Query: 251 RGSL 254
            G L
Sbjct: 300 SGRL 303

>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 72/184 (39%), Gaps = 7/184 (3%)
Query: 78  TAGI--DHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWP 135
           TAGI  DHVDLQ    R + V       S   A++                 + R G W 
Sbjct: 120 TAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWN 179
Query: 136 DHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFY 190
                     L    VG V  G IG  V +RL PF   + YT R + P      ++  ++
Sbjct: 180 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWH 239
Query: 191 ANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLV 250
           A    +    DV+ + C L  ET HMIN + +    +   I+N  RG L D   +   L 
Sbjct: 240 ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALE 299
Query: 251 RGSL 254
            G L
Sbjct: 300 SGRL 303

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 96/228 (42%), Gaps = 18/228 (7%)
Query: 29  DPLLHSADSTHSFLSRHASSVRAILCXXXXXXXXXXXXXXXXXEIVVGSTAGIDHVDLQE 88
           D LL +     + L R A++V A +                  +IV  +  G+D+VD+  
Sbjct: 36  DKLLAAVPEADALLVRSATTVDAEVLAAAPKL-----------KIVARAGVGLDNVDVDA 84
Query: 89  CRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGAYPLGSTLGG 148
              RG+LV NA  +     A++             + D  +R   W        G+ + G
Sbjct: 85  ATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFS--GTEIFG 142
Query: 149 KRVGIVGLGSIGSEVAKRLVPFGCSIA----YTSRKKKPGVSYPFYANVSGLAADSDVLI 204
           K VG+VGLG IG  VA+R+  FG  +     Y S  +   +      ++  L A +D + 
Sbjct: 143 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELL-SLDDLLARADFIS 201
Query: 205 VCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
           V    T ET  +I+K+ +       +I+N  RG L+DE  L   +  G
Sbjct: 202 VHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGG 249

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 96/228 (42%), Gaps = 18/228 (7%)
Query: 29  DPLLHSADSTHSFLSRHASSVRAILCXXXXXXXXXXXXXXXXXEIVVGSTAGIDHVDLQE 88
           D LL +     + L R A++V A +                  +IV  +  G+D+VD+  
Sbjct: 35  DKLLAAVPEADALLVRSATTVDAEVLAAAPKL-----------KIVARAGVGLDNVDVDA 83
Query: 89  CRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGAYPLGSTLGG 148
              RG+LV NA  +     A++             + D  +R   W        G+ + G
Sbjct: 84  ATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFS--GTEIFG 141
Query: 149 KRVGIVGLGSIGSEVAKRLVPFGCSIA----YTSRKKKPGVSYPFYANVSGLAADSDVLI 204
           K VG+VGLG IG  VA+R+  FG  +     Y S  +   +      ++  L A +D + 
Sbjct: 142 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELL-SLDDLLARADFIS 200
Query: 205 VCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
           V    T ET  +I+K+ +       +I+N  RG L+DE  L   +  G
Sbjct: 201 VHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGG 248

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 9/191 (4%)
Query: 73  IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNG 132
           I+V   +G D++D++     GI V N   A  E+ AD             + + + +R G
Sbjct: 88  IIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREG 147
Query: 133 -----LWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY 187
                +          + + G+ +GI+GLG +G  VA R   FG ++ +       GV  
Sbjct: 148 TRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVER 207
Query: 188 PF----YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEK 243
                  + +  L   SD + + C L E  HH+IN   +  + +   ++N  RG L+DEK
Sbjct: 208 ALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEK 267
Query: 244 ELVHFLVRGSL 254
            L   L  G +
Sbjct: 268 ALAQALKEGRI 278

>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 84/182 (46%), Gaps = 10/182 (5%)
Query: 80  GIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGA 139
           G D+ D+  C  RG+ +T   +  +   A+              + D FVR+G +     
Sbjct: 78  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 137
Query: 140 YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAY-------TSRKKKPGVSYPFYAN 192
              G+ L    VG +G G+IG   A RL  +G ++ Y       T  +++ G+       
Sbjct: 138 RFYGTGLDNATVGFLGXGAIGLAXADRLQGWGATLQYHAAKALDTQTEQRLGLRQ---VA 194
Query: 193 VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
            S L A SD +++   L  +T H++N +++  +    +++N  RG+++DE  ++  L RG
Sbjct: 195 CSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERG 254
Query: 253 SL 254
            L
Sbjct: 255 QL 256

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 9/191 (4%)
Query: 73  IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNG 132
           I+V   +G D++D++     GI V N   A  E+ AD             + + + +R G
Sbjct: 91  IIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREG 150
Query: 133 -----LWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY 187
                +          + + G+ +GI+GLG +G  VA R   FG ++ +       G+  
Sbjct: 151 TRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGIER 210
Query: 188 PF----YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEK 243
                  + +  L   SD + + C L E  HH+IN   +  + +   ++N  RG L+DEK
Sbjct: 211 ALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEK 270
Query: 244 ELVHFLVRGSL 254
            L   L  G +
Sbjct: 271 ALAQALKEGRI 281

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 9/191 (4%)
Query: 73  IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNG 132
           I+V   +G D++D++     GI V N   A  E+ AD             + + + +R G
Sbjct: 91  IIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREG 150
Query: 133 -----LWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY 187
                +          + + G+ +GI+GLG +G  VA R   FG ++ +       G+  
Sbjct: 151 TRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGIER 210
Query: 188 PF----YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEK 243
                  + +  L   SD + + C L E  HH+IN   +  + +   ++N  RG L+DEK
Sbjct: 211 ALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEK 270
Query: 244 ELVHFLVRGSL 254
            L   L  G +
Sbjct: 271 ALAQALKEGRI 281

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 9/191 (4%)
Query: 73  IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNG 132
           I+V   +G D++D++     GI V N   A  E+ AD             + + + +R G
Sbjct: 91  IIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREG 150
Query: 133 -----LWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY 187
                +          + + G+ +GI+GL  +G  VA R   FG ++ +       G+  
Sbjct: 151 TRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVALRAKAFGFNVLFYDPYLSDGIER 210
Query: 188 PF----YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEK 243
                  + +  L   SD + + C L E  HH+IN   +  + +   ++N  RG L+DEK
Sbjct: 211 ALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEK 270
Query: 244 ELVHFLVRGSL 254
            L   L  G +
Sbjct: 271 ALAQALKEGRI 281

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 9/191 (4%)
Query: 73  IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNG 132
           ++V   +G D+VD++     GI V N  +A  E+ AD             + + + +R G
Sbjct: 72  VIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALREG 131
Query: 133 -----LWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY 187
                +          + + G+ +G++G G  G  VA R   FG S+ +     + G+  
Sbjct: 132 TRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIER 191
Query: 188 PF----YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEK 243
                    +  L   SD + + C L E  HH+IN   +  + +   ++N  RG L+DEK
Sbjct: 192 SLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEK 251
Query: 244 ELVHFLVRGSL 254
            L   L  G +
Sbjct: 252 ALAQALKEGRI 262

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 2/176 (1%)
Query: 80  GIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGA 139
           G D++D+   ++ GI ++N         A++              +   ++ G +   G 
Sbjct: 78  GTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGT 137
Query: 140 YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKKPGVSYPFYANVSGLAA 198
           + +G  LG + VG++G G IG    K    FG   IAY     K       Y ++  L  
Sbjct: 138 F-IGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFK 196
Query: 199 DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
            SDV+ +     E+  H+IN+     +    ++IN  R  LID + ++  L  G L
Sbjct: 197 QSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKL 252

>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 8/186 (4%)
Query: 77  STAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPD 136
           + AG+D +    CRR    +TN    F    ++Y                   +  LW  
Sbjct: 74  TYAGVDVLLDARCRR-DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQS 132
Query: 137 HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSR--KKKPGVSYPFY-ANV 193
           H        L G+ + I+G GSIG  +A     FG  +   SR  +++ G    +    +
Sbjct: 133 HPY----QGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPAL 188
Query: 194 SGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGS 253
           + + A +DV++     T ETHH+             ++ NVGRG  I+E +L+  L  G 
Sbjct: 189 NKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGK 248
Query: 254 LVELVL 259
           L   VL
Sbjct: 249 LGMAVL 254

>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 13/182 (7%)
Query: 83  HVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHG---- 138
           H+DL+ C  +G++V   G       A+                   +++G W   G    
Sbjct: 88  HIDLEACTDKGVVVLE-GKGSPVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKST 146
Query: 139 ----AYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAY----TSRKKKPGVSYPFY 190
                + +G  L G+ +GI G G IG  VA     FG ++       S+++     +   
Sbjct: 147 TMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVA 206
Query: 191 ANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLV 250
            +   L   SDVL V   L +ET  +I    +T +    + +N  R  L++E  +V  L 
Sbjct: 207 ESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALN 266
Query: 251 RG 252
           RG
Sbjct: 267 RG 268

>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 7/180 (3%)
Query: 78  TAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDH 137
           + G + V+L+  R+RGI V NA  + +   A+                      G W   
Sbjct: 88  SVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKT 147
Query: 138 GAYPLGS-TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAY--TSRKKKPGVSYPFYANVS 194
               +GS  + GK +GIVG G+IGS+V       G ++ Y  TS K + G   P  A++ 
Sbjct: 148 A---IGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQYGNVKP-AASLD 203
Query: 195 GLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
            L   SDV+ +    ++ T  +I +  +  + K   +IN  RG+ +D + L   L  G L
Sbjct: 204 ELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHL 263

>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 14/182 (7%)
Query: 80  GIDHVDLQECRRRGILVTN----AGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGL-W 134
           G+D++D+ + +  G  +TN    + NA +E  A              +  ++  R+ L W
Sbjct: 80  GVDNIDMAKAKELGFQITNVPVYSPNAIAEHAA---IQAARILRQDKAMDEKVARHDLRW 136
Query: 135 PDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFY--AN 192
               A  +G  +  + VG+VG G IG    + +  FG  +      + P +    Y   +
Sbjct: 137 ----APTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDS 192
Query: 193 VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
           +  L   +DV+ +         HMIN + +  + ++ VI+NV RG L+D   ++  L  G
Sbjct: 193 LDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSG 252
Query: 253 SL 254
            +
Sbjct: 253 KI 254

>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 14/182 (7%)
Query: 80  GIDHVDLQECRRRGILVTN----AGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGL-W 134
           G+D++D+ + +  G  +TN    + NA +E  A              +  ++  R+ L W
Sbjct: 80  GVDNIDMAKAKELGFQITNVPVYSPNAIAEHAA---IQAARILRQDKAMDEKVARHDLRW 136
Query: 135 PDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFY--AN 192
               A  +G  +  + VG+VG G IG    + +  FG  +      + P +    Y   +
Sbjct: 137 ----APTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDS 192
Query: 193 VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
           +  L   +DV+ +         HMIN + +  + ++ VI+NV RG L+D   ++  L  G
Sbjct: 193 LDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSG 252
Query: 253 SL 254
            +
Sbjct: 253 KI 254

>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase (ycdw) From Salmonella Typhimurium In Complex With Nadp Length = 315

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
Query: 151 VGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK--PGV-SYPFYANVSGLAADSDVLIVCC 207
           VGI G G +G++VA+ L  +G  +   SR +K  PGV SY     +      + VLI   
Sbjct: 142 VGIXGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLL 201
Query: 208 ALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLM 267
             T +T  +IN +++  L     ++N+ RG  + E +L+  L  G L    L       +
Sbjct: 202 PNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEPL 261
Query: 268 CQRSCL 273
            Q S L
Sbjct: 262 PQESPL 267

>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 21/200 (10%)
Query: 72  EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRN 131
           ++   + AG D +DL     RG+   N+  A     +D             S  +R  R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 132 GLWPDHGAY-----PLGSTLGGKR---VGIVGLGSIGSEVAKR--------LVPFGCSIA 175
           G   D   +      +G +    R   +G VGLG+I  E+A++        LV +  + A
Sbjct: 142 G---DPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA 198
Query: 176 YTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVG 235
               +K  G       ++  LA  SD + V     + THH+I++    A+     I+N  
Sbjct: 199 DAETEKALGAER--VDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTA 256
Query: 236 RGALIDEKELVHFLVRGSLV 255
           RG +I +  L+  L  G L+
Sbjct: 257 RGPVISQDALIAALKSGKLL 276

>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 21/200 (10%)
Query: 72  EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRN 131
           ++   + AG D +DL     RG+   N+  A     +D             S  +R  R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 132 GLWPDHGAY-----PLGSTLGGKR---VGIVGLGSIGSEVAKR--------LVPFGCSIA 175
           G   D   +      +G +    R   +G VGLG+I  E+A++        LV +  + A
Sbjct: 142 G---DPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA 198
Query: 176 YTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVG 235
               +K  G       ++  LA  SD + V     + THH+I++    A+     I+N  
Sbjct: 199 DAETEKALGAER--VDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTA 256
Query: 236 RGALIDEKELVHFLVRGSLV 255
           RG +I +  L+  L  G L+
Sbjct: 257 RGPVISQDALIAALKSGKLL 276

>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 21/200 (10%)
Query: 72  EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRN 131
           ++   + AG D +DL     RG+   N+  A     +D             S  +R  R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 132 GLWPDHGAY-----PLGSTLGGKR---VGIVGLGSIGSEVAKR--------LVPFGCSIA 175
           G   D   +      +G +    R   +G VGLG+I  E+A++        LV +  + A
Sbjct: 142 G---DPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA 198
Query: 176 YTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVG 235
               +K  G       ++  LA  SD + V     + THH+I++    A+     I+N  
Sbjct: 199 DAETEKALGAER--VDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTA 256
Query: 236 RGALIDEKELVHFLVRGSLV 255
           RG +I +  L+  L  G L+
Sbjct: 257 RGPVISQDALIAALKSGKLL 276

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 78/193 (40%), Gaps = 12/193 (6%)
Query: 72  EIVVGSTAGIDHVDL----QECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDR 127
           ++VV +  G DH+DL    Q  ++  +L     N  S   A++                 
Sbjct: 87  KLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSV--AEHVVMTMLVLVRNFVPAHE 144
Query: 128 FVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFG-CSIAYTSRKKKPG-- 184
            + N  W           + GK +  +G G IG  V +RLVPF    + Y   +  P   
Sbjct: 145 QIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDA 204
Query: 185 ---VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALID 241
              V      N+  L A +D++ V   L   T  +INK++++   K   ++N  RGA+  
Sbjct: 205 EEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICV 264
Query: 242 EKELVHFLVRGSL 254
            +++   L  G L
Sbjct: 265 AEDVAAALESGQL 277

>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 78/193 (40%), Gaps = 12/193 (6%)
Query: 72  EIVVGSTAGIDHVDL----QECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDR 127
           ++VV +  G DH+DL    Q  ++  +L     N  S   A++                 
Sbjct: 86  KLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSV--AEHVVMTMLVLVRNFVPAHE 143
Query: 128 FVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPG-- 184
            + N  W           + GK +  +G G IG  V +RLVPF    + Y   +  P   
Sbjct: 144 QIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDA 203
Query: 185 ---VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALID 241
              V      N+  L A +D++ V   L   T  +INK++++   K   ++N  RGA+  
Sbjct: 204 EEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICV 263
Query: 242 EKELVHFLVRGSL 254
            +++   L  G L
Sbjct: 264 AEDVAAALESGQL 276

>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From Pyrobaculum Aerophilum Length = 303

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 17/178 (9%)
Query: 78  TAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDH 137
           TAG+DH+  +        VT AGNA    G++             +   R ++ G     
Sbjct: 58  TAGLDHLPWESIPPH---VTVAGNA----GSNADAVAEFALALLLAPYKRIIQYGEKXKR 110
Query: 138 GAY------PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYA 191
           G Y      PL   + G++V ++GLG IG+ V K L   G  +   SR  K G  + F  
Sbjct: 111 GDYGRDVEIPL---IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG-PWRFTN 166
Query: 192 NVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFL 249
           ++     ++   +    L + T  ++    +    ++ V +NVGR  ++D   ++  L
Sbjct: 167 SLEEALREARAAVCALPLNKHTRGLVKYQHLALXAEDAVFVNVGRAEVLDRDGVLRIL 224

>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 12/186 (6%)
Query: 80  GIDHVDLQECRRRGILVTN----AGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWP 135
           G+D++D+ + +  G  +TN    + NA +E  A                + +  R+  W 
Sbjct: 80  GVDNIDMDKAKELGFQITNVPVYSPNAIAEHAAIQAARVLRQDKRMDEKMAK--RDLRW- 136
Query: 136 DHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKKPGVSYPFYAN-V 193
              A  +G  +  + VG+VG G IG    + +  FG   IAY   K        +Y + +
Sbjct: 137 ---APTIGREVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDIFKNPELEKKGYYVDSL 193
Query: 194 SGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGS 253
             L   +DV+ +         HMIN   +  +    VI+N  RG L+D   ++  L  G 
Sbjct: 194 DDLYKQADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGK 253
Query: 254 LVELVL 259
           +   V+
Sbjct: 254 IFGFVM 259

>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 151 VGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF--YANVSGLAADSDVLIVCCA 208
           VG++G+G IGS VA+     G  +        P    PF  Y +   +  ++D++ +   
Sbjct: 151 VGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFE-PFLTYTDFDTVLKEADIVSLHTP 209
Query: 209 LTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
           L   T +MI +  +  + K   +IN  RG L+D   L+  L  G +
Sbjct: 210 LFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEI 255

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 83/187 (44%), Gaps = 9/187 (4%)
Query: 72  EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRN 131
           +I+  +  G+D++D +E  +R I V  A  A ++   +              +     ++
Sbjct: 70  KIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKS 129
Query: 132 GLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSI-AY---TSRKKKPGVSY 187
           G++        G  L GK +GIVG G IG++V       G  + AY     R+K   ++ 
Sbjct: 130 GIFKKIE----GLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINA 185
Query: 188 PFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVH 247
               ++  L  +SDV+ +   ++++   +I+      +    +I+N  R   ++ K L+ 
Sbjct: 186 KA-VSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLD 244
Query: 248 FLVRGSL 254
           ++ +G +
Sbjct: 245 YIKKGKV 251

>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 80/186 (43%), Gaps = 33/186 (17%)
Query: 78  TAGIDHVDLQECRRRGILVTNA----GNAFSEDGADYXXXXXXXXXXXXSSIDRFVR--N 131
           +AG+D++ L+  +  G++V N      +A SE                 +++   VR  +
Sbjct: 69  SAGVDYLPLKALQAAGVVVANTSGIHADAISES--------------VLAAMLSVVRGYH 114
Query: 132 GLWPDH-----GAYPLG-STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV 185
             W +       A P+  STL G+++ I G G IG  +A +    G  +   +    P  
Sbjct: 115 AAWLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPAD 174
Query: 186 SYPFYANVSGLAADS-----DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALI 240
              F+  V+  A        + ++    LT  THH+ + ++     ++ ++IN+GRG  +
Sbjct: 175 H--FHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAV 232
Query: 241 DEKELV 246
           D   L+
Sbjct: 233 DTTALM 238

>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 3/163 (1%)
Query: 80  GIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGA 139
           G + VDL    +RGI V NA  + +   A+                +     G+W    A
Sbjct: 84  GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAA 143
Query: 140 YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA-YTSRKKKPGVSYPFYANVSGLAA 198
               +   GK++GI+G G IG+++       G  +  Y    K P  +     ++S L  
Sbjct: 144 GSFEAR--GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLN 201
Query: 199 DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALID 241
            SDV+ +       T +M+    ++ +    ++IN  RG ++D
Sbjct: 202 MSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVD 244

>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 4/171 (2%)
Query: 73  IVVGSTA-GIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRN 131
           + +G+ A G + VDL    +RGI V NA  + +   A+                +     
Sbjct: 77  VAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHR 136
Query: 132 GLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA-YTSRKKKPGVSYPFY 190
           G+W    A    +   GK++GI+G G IG+++       G  +  Y    K P  +    
Sbjct: 137 GVWNKLAAGSFEAR--GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQV 194
Query: 191 ANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALID 241
            ++S L   SDV+ +       T +M+    ++ +    ++IN  RG ++D
Sbjct: 195 QHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVD 245

>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 4/171 (2%)
Query: 73  IVVGSTA-GIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRN 131
           + +G+ A G + VDL    +RGI V NA  + +   A+                +     
Sbjct: 77  VAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHR 136
Query: 132 GLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA-YTSRKKKPGVSYPFY 190
           G+W    A    +   GK++GI+G G IG+++       G  +  Y    K P  +    
Sbjct: 137 GVWNKLAAGSFEAR--GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQV 194
Query: 191 ANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALID 241
            ++S L   SDV+ +       T +M+    ++ +    ++IN  RG ++D
Sbjct: 195 QHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVD 245

>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query: 143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDV 202
           G +L  + +GIVG+G++GS +  RL   G         +        +  +  L  ++DV
Sbjct: 114 GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADV 173
Query: 203 LIVCCALTEE----THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELV 258
           L     L ++    T H+ ++ ++  L    ++IN  RG ++D   L+  L  G  + +V
Sbjct: 174 LTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVV 233
Query: 259 L 259
           L
Sbjct: 234 L 234

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	286
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	1e-92
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	3e-91
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	5e-67
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	7e-62
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	3e-60
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	5e-60
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	7e-58
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	8e-58
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	1e-57
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	1e-56
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	1e-52
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	3e-51
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	5e-50
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	3e-48
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	4e-47
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	1e-44
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	1e-44
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	7e-43
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	1e-42
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	2e-42
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	2e-42
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	5e-42
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	3e-40
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	2e-39
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	4e-38
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	2e-37
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	5e-37
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	1e-35
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	6e-34
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	2e-33
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	3e-29
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	1e-28
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	5e-15

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score =  276 bits (709), Expect = 1e-92
 Identities = 102/234 (43%), Positives = 147/234 (62%), Gaps = 3/234 (1%)

Query: 21  LSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAG 80
           L +RF L      +  +   FL+  A S+RA++    +   ++ +  LP LEIV   + G
Sbjct: 40  LDKRFKLFR--YWTQPAQRDFLALQAESIRAVVGNSNAGADAELIDALPKLEIVSSFSVG 97

Query: 81  IDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAY 140
           +D VDL +C  +G+ VTN  +  ++D AD  +GL++ VLRR+   D++VR G W   G +
Sbjct: 98  LDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWK-FGDF 156

Query: 141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADS 200
            L +   GKRVGI+GLG IG  VA+R   F C I+Y SR KKP  +Y +Y +V  LA++S
Sbjct: 157 KLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNTNYTYYGSVVELASNS 216

Query: 201 DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
           D+L+V C LT ET H+IN++V+ ALG +GV+IN+GRG  +DE ELV  LV G L
Sbjct: 217 DILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRL 270

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score =  272 bits (699), Expect = 3e-91
 Identities = 83/234 (35%), Positives = 127/234 (54%), Gaps = 3/234 (1%)

Query: 21  LSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAG 80
           L   +++         +    L     S+RA+   G + L+++ +  LP+L I+  +  G
Sbjct: 47  LQRNYSVHRLY---QAADRPALEAALPSIRAVATGGGAGLSNEWMEKLPSLGIIAINGVG 103

Query: 81  IDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAY 140
            D VDL   RRR I VT      ++D AD  + L++ VLRRV   DR VR G W      
Sbjct: 104 TDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQL 163

Query: 141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADS 200
           PLG +  GKR+G++GLG IG  +A R   FG S+ Y +R    GV +  + +   LA DS
Sbjct: 164 PLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSGVDWIAHQSPVDLARDS 223

Query: 201 DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
           DVL VC A +  T ++++  ++ ALG EG+++NV RG ++DE  L+  L  G++
Sbjct: 224 DVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTI 277

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =  211 bits (539), Expect = 5e-67
 Identities = 65/241 (26%), Positives = 113/241 (46%), Gaps = 10/241 (4%)

Query: 21  LSERFTLLDPLLHSADS--THSFLSRHASSVRAILCLGPSPLTSDTLS-LLPALEIVVGS 77
           L +RF   D  ++  D+  T S ++  A     +       +T++ +  L P L+ +   
Sbjct: 45  LRQRF---DLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIATL 101

Query: 78  TAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPD- 136
           + G DH+D+   R  GI V +  +  S+  A+  + L+++  RR    DR VR+G WP  
Sbjct: 102 SVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGW 161

Query: 137 HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS---YPFYANV 193
                LG  L G+R+GI G+G IG  +A R   FG +I Y +R +          ++  +
Sbjct: 162 GPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDTL 221

Query: 194 SGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGS 253
             L   SD+ ++      E    ++ D +  + +  V+IN+ RG LI++  L+  L    
Sbjct: 222 DSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKH 281

Query: 254 L 254
           L
Sbjct: 282 L 282

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  196 bits (501), Expect = 7e-62
 Identities = 42/214 (19%), Positives = 92/214 (42%), Gaps = 5/214 (2%)

Query: 41  FLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAG 100
           F       +  +     S +T++ L+ +P L+ +   TAG+DH+  +      + V    
Sbjct: 21  FKIVRGGDLGNVEAALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPPH-VTVAGNA 79

Query: 101 NAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIG 160
            + ++  A++ + LL+   +R+      ++ G +           + G++V ++GLG IG
Sbjct: 80  GSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE---IPLIQGEKVAVLGLGEIG 136

Query: 161 SEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKD 220
           + V K L   G  +   SR  K G  + F  ++     ++   +    L + T  ++   
Sbjct: 137 TRVGKILAALGAQVRGFSRTPKEGP-WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQ 195

Query: 221 VMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
            +  + ++ V +NVGR  ++D   ++  L     
Sbjct: 196 HLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQ 229

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  193 bits (493), Expect = 3e-60
 Identities = 72/219 (32%), Positives = 111/219 (50%), Gaps = 8/219 (3%)

Query: 42  LSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGN 101
           L +    V A++ +    +  +     P L IV     G D++D++E  +RGI VTN  +
Sbjct: 39  LLKKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPD 98

Query: 102 AFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGA-----YPLGSTLGGKRVGIVGL 156
             ++  AD    LL+   R V   DRFVR+G W   G      + LG  + GK +GI+GL
Sbjct: 99  VLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGL 158

Query: 157 GSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEET 213
           G IG  +AKR   F   I Y SR +K  V       +  +  L  +SD +++   LT ET
Sbjct: 159 GRIGQAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRET 218

Query: 214 HHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
           +H+IN++ +  + K  ++IN+ RG ++D   LV  L  G
Sbjct: 219 YHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEG 257

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  192 bits (490), Expect = 5e-60
 Identities = 67/210 (31%), Positives = 111/210 (52%), Gaps = 5/210 (2%)

Query: 42  LSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGN 101
           L +       ++      + ++ +     L+++   + G+DHVDL+  R RGI VT+   
Sbjct: 37  LLKRVEGAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPG 96

Query: 102 AFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPD-HGAYPLGSTLGGKRVGIVGLGSIG 160
             +E  AD  + LL+ V RRV     + R+GLW   H    LG  L G  +G+VG+G IG
Sbjct: 97  VLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIG 156

Query: 161 SEVAKRLVPFGCSIAYTSRKKKP-GVSYPFYANVSGLAADSDVLIVCCALTEETHHMINK 219
             VAKR + FG  + Y +R  KP       + ++  L  ++DV+ +   LT ETH ++N+
Sbjct: 157 QAVAKRALAFGMRVVYHARTPKPLPYP---FLSLEELLKEADVVSLHTPLTPETHRLLNR 213

Query: 220 DVMTALGKEGVIINVGRGALIDEKELVHFL 249
           + + A+ +  +++N  RGAL+D + LV  L
Sbjct: 214 ERLFAMKRGAILLNTARGALVDTEALVEAL 243

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  186 bits (476), Expect = 7e-58
 Identities = 58/220 (26%), Positives = 98/220 (44%), Gaps = 11/220 (5%)

Query: 42  LSRHASSVRAILCLGPSPLTSDTLSLLPA-LEIVVGSTAGIDHVDLQECRRRGILVTNAG 100
           +   A SV A+L         + +  +P  ++ +   + G DH+DL  C+ RGI V NA 
Sbjct: 38  MIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAP 97

Query: 101 NAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPD-HGAYPLGSTLGGKRVGIVGLGSI 159
           +  +   A+  + LL+   RR    ++ +R   WP       +G  L  K +GI G GSI
Sbjct: 98  HGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSI 157

Query: 160 GSEVAKRLVPFGCSIAYTSRKKKP-------GVSYPFYANVSGLAADSDVLIVCCALTEE 212
           G  +AKR   F   I Y    +           ++  + ++  L + S    +    T E
Sbjct: 158 GQALAKRAQGFDMDIDYFDTHRASSSDEASYQATF--HDSLDSLLSVSQFFSLNAPSTPE 215

Query: 213 THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
           T +  NK  + +L +  +++N  RG L+D + +V  L  G
Sbjct: 216 TRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAG 255

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score =  187 bits (478), Expect = 8e-58
 Identities = 59/253 (23%), Positives = 100/253 (39%), Gaps = 19/253 (7%)

Query: 21  LSERFTLLDPLLHS-ADSTHSFLSRHASSVRAILCLGPS------PLTSDTLSLLPA-LE 72
             ++F ++   L +      +   +      AI+ L         P  +D +S LP+ L+
Sbjct: 23  FQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLPSSLK 82

Query: 73  IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNG 132
           +   + AG D +DL     RG+   N+  A     +D  + L++ V R  S  +R  R G
Sbjct: 83  VFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTG 142

Query: 133 LWP-----DHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLV-PFGCSIAYTSRKKKP--- 183
                               G  +G VGLG+I  E+A++ V   G  + Y          
Sbjct: 143 DPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAET 202

Query: 184 --GVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALID 241
              +      ++  LA  SD + V     + THH+I++    A+     I+N  RG +I 
Sbjct: 203 EKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVIS 262

Query: 242 EKELVHFLVRGSL 254
           +  L+  L  G L
Sbjct: 263 QDALIAALKSGKL 275

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score =  186 bits (475), Expect = 1e-57
 Identities = 69/217 (31%), Positives = 108/217 (49%), Gaps = 6/217 (2%)

Query: 42  LSRHASSVRAILCLGPSPLTSDTL-SLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAG 100
           L R  +    +LCL    +    L +    L+++   + GIDH+ L E ++RGI V    
Sbjct: 47  LERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTP 106

Query: 101 NAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPD-HGAYPLGSTLGGKRVGIVGLGSI 159
           +  ++  A+  V LL+   RR+      V+NG W      +  G  L    VGI+GLG I
Sbjct: 107 DVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRI 166

Query: 160 GSEVAKRLVPFGCS-IAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHH 215
           G  +A+RL PFG     YT R+ +P  +  F   + +   LAA SD ++V C+LT  T  
Sbjct: 167 GQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEG 226

Query: 216 MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
           + NKD    + +  V IN+ RG ++++ +L   L  G
Sbjct: 227 LCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASG 263

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score =  183 bits (468), Expect = 1e-56
 Identities = 57/220 (25%), Positives = 106/220 (48%), Gaps = 10/220 (4%)

Query: 42  LSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGN 101
           + R     +A++   P  + +D L   P L ++  +  G D+ D+  C  RG+ +T   +
Sbjct: 39  ILRRCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPD 98

Query: 102 AFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGS 161
             +   A+  +GL V + R + + D FVR+G +        G+ L    VG +G+G+IG 
Sbjct: 99  LLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGL 158

Query: 162 EVAKRLVPFGCSIAYTSRKKKP-------GVSYPFYANVSGLAADSDVLIVCCALTEETH 214
            +A RL  +G ++ Y   K          G+        S L A SD +++   L  +T 
Sbjct: 159 AMADRLQGWGATLQYHEAKALDTQTEQRLGLR---QVACSELFASSDFILLALPLNADTL 215

Query: 215 HMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
           H++N +++  +    +++N  RG+++DE  ++  L RG L
Sbjct: 216 HLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQL 255

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score =  174 bits (442), Expect = 1e-52
 Identities = 41/206 (19%), Positives = 87/206 (42%), Gaps = 5/206 (2%)

Query: 52  ILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYV 111
           ++      L +        L+ V   +AG+D++ L+  +  G++V N     ++  ++ V
Sbjct: 43  VMYGNHPLLKTILARPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESV 102

Query: 112 VGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFG 171
           +  ++ V+R   +     R             STL G+++ I G G IG  +A +    G
Sbjct: 103 LAAMLSVVRGYHAAWLNQRGARQWALPM--TTSTLTGQQLLIYGTGQIGQSLAAKASALG 160

Query: 172 CSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKE 228
             +   +    P   +     +   +   A ++ ++    LT  THH+ + ++     ++
Sbjct: 161 MHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQ 220

Query: 229 GVIINVGRGALIDEKELVHFLVRGSL 254
            ++IN+GRG  +D   L+  L    L
Sbjct: 221 PMLINIGRGPAVDTTALMTALDHHQL 246

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  172 bits (437), Expect = 3e-51
 Identities = 60/208 (28%), Positives = 91/208 (43%), Gaps = 11/208 (5%)

Query: 55  LGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGL 114
             P+ LT + ++    L++ + +  G DHVDLQ    R + V       S   A++VV +
Sbjct: 98  FWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMM 157

Query: 115 LVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSI 174
           ++ ++R       + R G W           L    VG V  G IG  V +RL PF   +
Sbjct: 158 ILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHL 217

Query: 175 AYTSRKKKP-------GVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGK 227
            YT R + P        +++  +A    +    DV+ + C L  ET HMIN + +  L K
Sbjct: 218 HYTDRHRLPESVEKELNLTW--HATREDMYPVCDVVTLNCPLHPETEHMINDETL-KLFK 274

Query: 228 EGV-IINVGRGALIDEKELVHFLVRGSL 254
            G  I+N  RG L D   +   L  G L
Sbjct: 275 RGAYIVNTARGKLCDRDAVARALESGRL 302

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  166 bits (424), Expect = 5e-50
 Identities = 69/221 (31%), Positives = 122/221 (55%), Gaps = 14/221 (6%)

Query: 42  LSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGN 101
           L         I+    + +T + L     L+++   +AG D++DL+E  +RGI VT    
Sbjct: 36  LKGVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSG 95

Query: 102 AFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLW----PDHGAYPLGSTLGGKRVGIVGLG 157
             SE  A++ VGL+++++R++   D+F+R G W         +    +L GK+VGI+G+G
Sbjct: 96  LLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMG 155

Query: 158 SIGSEVAKRLVPFGCSIAYTSRKKKP------GVSYPFYANVSGLAADSDVLIVCCALTE 211
           +IG  +A+RL+PFG  + Y SR +K             Y ++  L   SD++I+   LT 
Sbjct: 156 AIGKAIARRLIPFGVKLYYWSRHRKVNVEKELKAR---YMDIDELLEKSDIVILALPLTR 212

Query: 212 ETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
           +T+H+IN++ +    +   ++N+GRGAL+DEK +   + +G
Sbjct: 213 DTYHIINEERV-KKLEGKYLVNIGRGALVDEKAVTEAIKQG 252

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score =  158 bits (401), Expect = 4e-47
 Identities = 46/195 (23%), Positives = 92/195 (47%), Gaps = 7/195 (3%)

Query: 59  PLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDV 118
            +  D   L    +++   +AG+DH+D+       +L +NAG A+S   A++   LL+  
Sbjct: 38  QVIKDRYVLGKRTKMIQAISAGVDHIDVNGIPENVVLCSNAG-AYSISVAEHAFALLLAH 96

Query: 119 LRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTS 178
            + +   +  ++ G++         + L GK +GI+G G IG  VA     FG  +   +
Sbjct: 97  AKNILENNELMKAGIFRQS----PTTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYT 152

Query: 179 RKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGV-IINVGRG 237
           R            + + L   SD +++   LT++T  M+N  ++ A  ++ + I+NV R 
Sbjct: 153 RSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLL-ANARKNLTIVNVARA 211

Query: 238 ALIDEKELVHFLVRG 252
            ++ + +++ FL   
Sbjct: 212 DVVSKPDMIGFLKER 226

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  153 bits (389), Expect = 1e-44
 Identities = 61/233 (26%), Positives = 110/233 (47%), Gaps = 21/233 (9%)

Query: 36  DSTHSFLSRHASSVRAILC--LGPSPLTSDTLSLLPALEIVVGSTAGI--DHVDLQECRR 91
           +     L +H   +  ++     P+ +T++ +     L++++  TAGI  DH+DLQ    
Sbjct: 50  EGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLL--TAGIGSDHIDLQAAAA 107

Query: 92  RGILVTNA--GNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGK 149
            G+ V      N  S   A+  +  ++ ++R        V  G W   G       L GK
Sbjct: 108 AGLTVAEVTGSNVVS--VAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGK 165

Query: 150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP-------GVSYPFYANVSGLAADSDV 202
            +G VG G IG  + +RL PFGC++ Y  R +         G  +    +++ +    DV
Sbjct: 166 TIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKF--VEDLNEMLPKCDV 223

Query: 203 LIVCCALTEETHHMINKDVMTALGKEGV-IINVGRGALIDEKELVHFLVRGSL 254
           +++   LTE+T  M NK+++    K+GV I+N  RGA+++ + +V  +  G +
Sbjct: 224 IVINMPLTEKTRGMFNKELI-GKLKKGVLIVNNARGAIMERQAVVDAVESGHI 275

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score =  153 bits (389), Expect = 1e-44
 Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 15/230 (6%)

Query: 35  ADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGI 94
           A ST     +  +     L      LT + L    AL I+V   +G D++D++     GI
Sbjct: 50  AQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGI 109

Query: 95  LVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLW-----PDHGAYPLGSTLGGK 149
            V N   A  E+ AD  +  ++++ RR + + + +R G                + + G+
Sbjct: 110 AVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGE 169

Query: 150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP------GVSYPFYANVSGLAADSDVL 203
            +GI+GLG +G  VA R   FG ++ +             G+     + +  L   SD +
Sbjct: 170 TLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQR--VSTLQDLLFHSDCV 227

Query: 204 IVCCALTEETHHMINKDVMTALGKEGV-IINVGRGALIDEKELVHFLVRG 252
            + C L E  HH+IN   +    ++G  ++N  RG L+DEK L   L  G
Sbjct: 228 TLHCGLNEHNHHLINDFTV-KQMRQGAFLVNTARGGLVDEKALAQALKEG 276

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  149 bits (378), Expect = 7e-43
 Identities = 56/213 (26%), Positives = 95/213 (44%), Gaps = 22/213 (10%)

Query: 57  PSPLTSDTLSLLPALEIVVGSTAGI--DHVDLQECRRRG--ILVTNA--GNAFSEDGADY 110
           P+ +T + +     L++VV   AG+  DH+DL    + G  I V      N  S   A++
Sbjct: 71  PAYITKERIDKAKKLKLVV--VAGVGSDHIDLDYINQTGKKISVLEVTGSNVVS--VAEH 126

Query: 111 VVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPF 170
           VV  ++ ++R        + N  W           + GK +  +G G IG  V +RLVPF
Sbjct: 127 VVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPF 186

Query: 171 GCS-IAYT-------SRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM 222
               + Y          ++K G       N+  L A +D++ V   L   T  +INK+++
Sbjct: 187 NPKELLYYDYQALPKDAEEKVGARR--VENIEELVAQADIVTVNAPLHAGTKGLINKELL 244

Query: 223 TALGKEGV-IINVGRGALIDEKELVHFLVRGSL 254
            +  K+G  ++N  RGA+   +++   L  G L
Sbjct: 245 -SKFKKGAWLVNTARGAICVAEDVAAALESGQL 276

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score =  147 bits (373), Expect = 1e-42
 Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 10/204 (4%)

Query: 55  LGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGL 114
           +         L+    L     + AG+D + L    RR   +TN    F    ++YV G 
Sbjct: 52  MAEPARAKPLLAKANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGH 110

Query: 115 LVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSI 174
           L+ ++R++       +  LW  H    L     G+ + I+G GSIG  +A     FG  +
Sbjct: 111 LLSLMRQLPLYREQQKQRLWQSHPYQGLK----GRTLLILGTGSIGQHIAHTGKHFGMKV 166

Query: 175 AYTSR--KKKPGVS--YPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGV 230
              SR  +++ G    Y     ++ + A +DV++     T ETHH+             +
Sbjct: 167 LGVSRSGRERAGFDQVYQL-PALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAI 225

Query: 231 IINVGRGALIDEKELVHFLVRGSL 254
           + NVGRG  I+E +L+  L  G L
Sbjct: 226 LFNVGRGNAINEGDLLTALRTGKL 249

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score =  147 bits (373), Expect = 2e-42
 Identities = 49/217 (22%), Positives = 88/217 (40%), Gaps = 14/217 (6%)

Query: 46  ASSVRAILCLGPSPLTSDTLSLLPALEI-VVGS-TAGIDHVDLQECRRRGILVTNAGNAF 103
           A     ++        ++TL  L    I  +     G+D++D+ + +  G  +TN     
Sbjct: 44  AKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYS 103

Query: 104 SEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEV 163
               A++       +LR+  ++D  V            +G  +  + VG+VG G IG   
Sbjct: 104 PNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPT--IGREVRDQVVGVVGTGHIGQVF 161

Query: 164 AKRLVPFGCS-IAY----TSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMIN 218
            + +  FG   I Y        +K G    +  ++  L   +DV+ +         HMIN
Sbjct: 162 MQIMEGFGAKVITYDIFRNPELEKKGY---YVDSLDDLYKQADVISLHVPDVPANVHMIN 218

Query: 219 KDVMTALGKEGV-IINVGRGALIDEKELVHFLVRGSL 254
            + + A  K+ V I+NV RG L+D   ++  L  G +
Sbjct: 219 DESI-AKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKI 254

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score =  146 bits (372), Expect = 2e-42
 Identities = 39/216 (18%), Positives = 83/216 (38%), Gaps = 12/216 (5%)

Query: 46  ASSVRAILCLGPSPLTSDTLSLLPALEI-VVGS-TAGIDHVDLQECRRRGILVTNAGNAF 103
           A+   A++  G        L +   L +  + + TAG DH+D +  +  G  +       
Sbjct: 43  AAGFDAVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYS 102

Query: 104 SEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEV 163
               A+  V   + +LR  +          +           +    VG+VGLG IG   
Sbjct: 103 PNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFM-FSKEVRNCTVGVVGLGRIGRVA 161

Query: 164 AKRLVPFGCSI----AYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINK 219
           A+     G ++     +  +  +   +     ++  +   SD++ +     +E   ++ +
Sbjct: 162 AQIFHGMGATVIGEDVFEIKGIEDYCT---QVSLDEVLEKSDIITIHAPYIKENGAVVTR 218

Query: 220 DVMTALGKEGV-IINVGRGALIDEKELVHFLVRGSL 254
           D +    K+G  ++N  RG L+D + ++  +  G L
Sbjct: 219 DFL-KKMKDGAILVNCARGQLVDTEAVIEAVESGKL 253

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score =  146 bits (370), Expect = 5e-42
 Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 12/216 (5%)

Query: 46  ASSVRAILCLGPSPLTSDTLSLLPALEI-VVGS-TAGIDHVDLQECRRRGILVTNAGNAF 103
           A     I  L  +P  +     + A  I  +     G D++D+   ++ GI ++N     
Sbjct: 42  AKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYS 101

Query: 104 SEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEV 163
               A++ +   + +LR +  +   ++ G +   G + +G  LG + VG++G G IG   
Sbjct: 102 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTF-IGKELGQQTVGVMGTGHIGQVA 160

Query: 164 AKRLVPFGCSI----AYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINK 219
            K    FG  +     Y  +   P      Y ++  L   SDV+ +     E+  H+IN+
Sbjct: 161 IKLFKGFGAKVIAYDPYPMKGDHPDFD---YVSLEDLFKQSDVIDLHVPGIEQNTHIINE 217

Query: 220 DVMTALGKEGV-IINVGRGALIDEKELVHFLVRGSL 254
                L K G  +IN  R  LID + ++  L  G L
Sbjct: 218 AAF-NLMKPGAIVINTARPNLIDTQAMLSNLKSGKL 252

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  140 bits (356), Expect = 3e-40
 Identities = 64/209 (30%), Positives = 107/209 (51%), Gaps = 13/209 (6%)

Query: 51  AILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADY 110
           AI+      +T   +   P L+++  +  G+D++D++  + +GI V NA  A S   A+ 
Sbjct: 47  AIIVRSKPKVTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAEL 106

Query: 111 VVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPF 170
            VGL+  V R+++  DR +R G+W       +G  L GK +GI+G G IG +VAK     
Sbjct: 107 AVGLMFSVARKIAFADRKMREGVW-AKKEA-MGIELEGKTIGIIGFGRIGYQVAKIANAL 164

Query: 171 GCS-IAY-----TSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTA 224
           G + + Y       R K+       + ++  L  +SDV+ +   L E T+H+IN++ +  
Sbjct: 165 GMNILLYDPYPNEERAKEVNGK---FVDLETLLKESDVVTIHVPLVESTYHLINEERL-K 220

Query: 225 LGKEGV-IINVGRGALIDEKELVHFLVRG 252
           L K+   +IN  RG ++D   LV  L  G
Sbjct: 221 LMKKTAILINTSRGPVVDTNALVKALKEG 249

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score =  140 bits (354), Expect = 2e-39
 Identities = 54/214 (25%), Positives = 88/214 (41%), Gaps = 25/214 (11%)

Query: 59  PLTSDTLSLLPALEIV----VGSTAGIDHVDLQECRRRGILVTNA-GNAFSEDGADYVVG 113
            +T   L  LP L+I+      S     H+DL+ C  +G++V    G+  +   A+    
Sbjct: 60  RVTRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGSPVAP--AELTWA 117

Query: 114 LLVDVLRRVSSIDRFVRNGLW--------PDHGAYPLGSTLGGKRVGIVGLGSIGSEVAK 165
           L++   RR+      +++G W             + +G  L G+ +GI G G IG  VA 
Sbjct: 118 LVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAG 177

Query: 166 RLVPFGCS-IAYTS-----RKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINK 219
               FG + + +       R +  G +     +   L   SDVL V   L +ET  +I  
Sbjct: 178 YGRAFGMNVLVWGRENSKERARADGFAV--AESKDALFEQSDVLSVHLRLNDETRSIITV 235

Query: 220 DVMTALGKEGV-IINVGRGALIDEKELVHFLVRG 252
             +    K     +N  R  L++E  +V  L RG
Sbjct: 236 ADL-TRMKPTALFVNTSRAELVEENGMVTALNRG 268

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  139 bits (353), Expect = 4e-38
 Identities = 65/219 (29%), Positives = 108/219 (49%), Gaps = 15/219 (6%)

Query: 42  LSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNA-- 99
           L        A+L    + + ++ L+  P L+IV  +  G+D+VD+     RG+LV NA  
Sbjct: 38  LLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPT 97

Query: 100 GNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSI 159
            N  S   A++ + LL+   R++ + D  +R   W    ++  G+ + GK VG+VGLG I
Sbjct: 98  SNIHS--AAEHALALLLAASRQIPAADASLREHTW-KRSSF-SGTEIFGKTVGVVGLGRI 153

Query: 160 GSEVAKRLVPFGCS-IAY-----TSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEET 213
           G  VA+R+  FG   +AY      +R  + G+      ++  L A +D + V    T ET
Sbjct: 154 GQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIEL---LSLDDLLARADFISVHLPKTPET 210

Query: 214 HHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
             +I+K+ +       +I+N  RG L+DE  L   +  G
Sbjct: 211 AGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGG 249

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  133 bits (338), Expect = 2e-37
 Identities = 61/203 (30%), Positives = 102/203 (50%), Gaps = 17/203 (8%)

Query: 59  PLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNA--GNAFSEDGADYVVGLLV 116
            +T+D ++    L++V  +  G+D+VDL+   R+GILV N   GN+ S   A+   G+++
Sbjct: 78  KVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLS--AAELTCGMIM 135

Query: 117 DVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IA 175
            + R++      +++G W +   + +G+ L GK +GI+GLG IG EVA R+  FG   I 
Sbjct: 136 CLARQIPQATASMKDGKW-ERKKF-MGTELNGKTLGILGLGRIGREVATRMQSFGMKTIG 193

Query: 176 Y-----TSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGV 230
           Y            GV       +  +    D + V   L   T  ++N +   A  K+GV
Sbjct: 194 YDPIISPEVSASFGVQQ---LPLEEIWPLCDFITVHTPLLPSTTGLLNDNTF-AQCKKGV 249

Query: 231 -IINVGRGALIDEKELVHFLVRG 252
            ++N  RG ++DE  L+  L  G
Sbjct: 250 RVVNCARGGIVDEGALLRALQSG 272

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score =  132 bits (335), Expect = 5e-37
 Identities = 47/221 (21%), Positives = 78/221 (35%), Gaps = 23/221 (10%)

Query: 46  ASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGI------LVTNA 99
            +     L   P       +     L+ V    AG+D +  +      +      L    
Sbjct: 39  NNPADYALVWQPPVE----MLAGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLE 94

Query: 100 GNAFSEDGADYVVGLLVDVLRRVSSIDRFVRN---GLWPDHGAYPLGSTLGGKRVGIVGL 156
                    +Y V  ++   RR    D +       LW     Y          VGI+G 
Sbjct: 95  DTGMGLQMQEYAVSQVLHWFRR---FDDYQALKNQALWKPLPEYTRE----EFSVGIMGA 147

Query: 157 GSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLA---ADSDVLIVCCALTEET 213
           G +G++VA+ L  +G  +   SR +K       Y     L      + VLI     T +T
Sbjct: 148 GVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQT 207

Query: 214 HHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
             +IN +++  L     ++N+ RG  + E +L+  L  G L
Sbjct: 208 VGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKL 248

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  129 bits (326), Expect = 1e-35
 Identities = 47/201 (23%), Positives = 95/201 (47%), Gaps = 15/201 (7%)

Query: 59  PLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDV 118
            +T D +     L+I+  +  G+D++D +E  +R I V  A  A ++   +  +GL++  
Sbjct: 57  KVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAA 116

Query: 119 LRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAY- 176
            R++ +     ++G++        G  L GK +GIVG G IG++V       G   +AY 
Sbjct: 117 ARKMYTSMALAKSGIFKKI----EGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYD 172

Query: 177 ----TSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGV-I 231
                 + +K         ++  L  +SDV+ +   ++++   +I+      L K+ V I
Sbjct: 173 ILDIREKAEKINAKA---VSLEELLKNSDVISLHVTVSKDAKPIIDYPQF-ELMKDNVII 228

Query: 232 INVGRGALIDEKELVHFLVRG 252
           +N  R   ++ K L+ ++ +G
Sbjct: 229 VNTSRAVAVNGKALLDYIKKG 249

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score =  125 bits (317), Expect = 6e-34
 Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 35/196 (17%)

Query: 74  VVGS-TAGIDHVDLQECRRRGILVTNA--GNAFSEDGADYVVGLLVDVLRRVSSIDRFVR 130
            VG+ T G DH+DL      GI  ++A   NA      DYV+G L+ +            
Sbjct: 61  FVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARG--VVDYVLGCLLAMAEVR-------- 110

Query: 131 NGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAY--TSRKKKPGVSY 187
                       G+ L  +  G+VG G +G  + + L   G   +      + ++P   +
Sbjct: 111 ------------GADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAREPDGEF 158

Query: 188 PFYANVSGLAADSDVLIVCCALTEE----THHMINKDVMTALGKEGVIINVGRGALIDEK 243
               ++  L A++DV+ +   L  +    T H++++  + AL     ++N  RGA++D +
Sbjct: 159 ---VSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQ 215

Query: 244 ELVHFLVRGSLVELVL 259
            L   L  G+ +E+ L
Sbjct: 216 ALRRLLEGGADLEVAL 231

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score =  124 bits (314), Expect = 2e-33
 Identities = 48/196 (24%), Positives = 83/196 (42%), Gaps = 35/196 (17%)

Query: 74  VVGS-TAGIDHVDLQECRRRGILVTNA--GNAFSEDGADYVVGLLVDVLRRVSSIDRFVR 130
            VG+ TAG DHVD    ++ GI  + A   NA +    +YV   L+ +  R         
Sbjct: 64  FVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIA--VVEYVFSALLMLAER--------- 112

Query: 131 NGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAY--TSRKKKPGVSY 187
                       G +L  + +GIVG+G++GS +  RL   G   +        +     +
Sbjct: 113 -----------DGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEGDF 161

Query: 188 PFYANVSGLAADSDVLIVCCALTEE----THHMINKDVMTALGKEGVIINVGRGALIDEK 243
                +  L  ++DVL     L ++    T H+ ++ ++  L    ++IN  RG ++D  
Sbjct: 162 ---RTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNA 218

Query: 244 ELVHFLVRGSLVELVL 259
            L+  L  G  + +VL
Sbjct: 219 ALLARLNAGQPLSVVL 234

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score =  113 bits (285), Expect = 3e-29
 Identities = 53/202 (26%), Positives = 82/202 (40%), Gaps = 15/202 (7%)

Query: 60  LTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNA--GNAFSEDGADYVVGLLVD 117
           LT D ++    L  +     G + VDL    +RGI V NA   N  S   A+ V+G L+ 
Sbjct: 59  LTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRS--VAELVIGELLL 116

Query: 118 VLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAY 176
           +LR V   +     G+  +  A        GK++GI+G G IG+++       G     Y
Sbjct: 117 LLRGVPEANAKAHRGVG-NKLAA-GSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFY 174

Query: 177 ---TSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGV-II 232
                             ++S L   SDV+ +       T +M+    + +L K G  +I
Sbjct: 175 DIENKLPLGNATQVQ---HLSDLLNMSDVVSLHVPENPSTKNMMGAKEI-SLMKPGSLLI 230

Query: 233 NVGRGALIDEKELVHFLVRGSL 254
           N  RG ++D   L   L    L
Sbjct: 231 NASRGTVVDIPALADALASKHL 252

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score =  111 bits (281), Expect = 1e-28
 Identities = 57/203 (28%), Positives = 94/203 (46%), Gaps = 17/203 (8%)

Query: 60  LTSDTLSLLPALEIVVGSTAGI--DHVDLQECRRRGILVTNA--GNAFSEDGADYVVGLL 115
           LT +  +    L I VG    +  + V+L+  R+RGI V NA   N  S   A+ V+G +
Sbjct: 70  LTEEIFAAANRL-IAVG-CFSVGTNQVELKAARKRGIPVFNAPFSNTRS--VAELVIGEI 125

Query: 116 VDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-I 174
           + ++RR+         G W +  A      + GK +GIVG G+IGS+V       G +  
Sbjct: 126 IMLMRRIFPRSVSAHAGGW-EKTAI-GSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVR 183

Query: 175 AY--TSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGV-I 231
            Y  + + +   V     A++  L   SDV+ +    ++ T  +I +  +    K+G  +
Sbjct: 184 YYDTSDKLQYGNVKP--AASLDELLKTSDVVSLHVPSSKSTSKLITEAKL-RKMKKGAFL 240

Query: 232 INVGRGALIDEKELVHFLVRGSL 254
           IN  RG+ +D + L   L  G L
Sbjct: 241 INNARGSDVDLEALAKVLQEGHL 263

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 72.7 bits (178), Expect = 5e-15
 Identities = 28/196 (14%), Positives = 62/196 (31%), Gaps = 31/196 (15%)

Query: 49  VRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGA 108
           V  I       LT + +   P   +V     GI +  L +       +        +   
Sbjct: 75  VDTIFSNESIVLTEEMIEKTPNHCVVYS---GISNTYLNQ------CMKKTNRTLVKLME 125

Query: 109 DYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLV 168
              + +   +     +I   +++             T+ G  V ++GLG +G  VA++  
Sbjct: 126 RDDIAIYNSIPTAEGTIMMAIQH----------TDFTIHGANVAVLGLGRVGMSVARKFA 175

Query: 169 PFGCSIAYTSRKKKP-------GVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221
             G  +   +R+          G+     +  +    D DV I           ++  +V
Sbjct: 176 ALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTI-----PALVVTANV 230

Query: 222 MTALGKEGVIINVGRG 237
           +  +     +I++   
Sbjct: 231 LAEMPSHTFVIDLASK 246

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	286
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	100.0
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	99.96
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	99.96
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.94
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.9
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.84
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.83
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.7
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.68
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.66
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.65
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.64
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.62
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.62
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	99.57
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.55
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.51
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.51
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.5
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.48
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.48
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.45
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.45
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.42
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.42
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.39
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.36
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.35
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.31
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.29
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.27
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.25
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.24
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.24
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.23
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.21
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.21
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.2
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.19
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.18
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.18
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.18
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.18
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.17
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.16
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.15
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	99.15
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.12
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	99.11
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.1
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.08
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.07
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.05
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	99.01
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.0
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.99
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.54
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	98.98
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.98
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.97
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.96
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.95
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.91
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	98.9
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.89
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.88
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.88
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.88
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.86
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.84
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.83
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.81
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.79
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.79
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.79
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.78
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.77
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.76
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.76
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.75
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.72
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.71
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	98.68
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.67
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.66
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.66
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.66
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.66
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.65
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.64
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.63
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.62
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.62
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.61
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.61
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	98.6
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.59
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.59
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.58
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.56
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	98.56
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.56
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.56
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.56
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.55
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.54
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.54
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.54
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	98.54
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.54
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.53
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.53
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.52
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.5
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.47
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.42
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	98.36
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.35
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	98.32
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	98.31
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	98.3
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	98.3
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	98.28
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.26
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.24
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	98.22
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	98.2
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	98.2
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	98.18
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	98.18
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.17
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.15
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.15
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.13
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	98.08
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	98.06
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.05
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	98.04
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	98.03
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.03
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	98.03
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.99
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.99
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.99
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.97
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.95
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.95
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	97.93
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.92
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.87
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.86
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	97.86
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.85
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.82
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.79
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.78
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.78
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	97.78
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.75
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.74
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.74
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.7
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.7
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	97.7
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.69
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.68
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	97.67
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.66
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	97.65
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	97.65
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.64
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.63
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.63
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.62
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.61
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.58
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.57
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.57
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.57
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.56
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.54
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	97.52
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	97.52
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	97.51
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.51
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.5
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.5
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.49
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	97.46
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.45
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	97.45
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.41
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	97.4
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	97.39
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	97.38
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.38
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.37
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	97.37
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	97.33
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	97.31
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	97.3
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	97.29
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	97.26
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	97.26
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.24
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	97.23
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	97.22
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	97.22
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.22
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	97.2
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	97.2
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	97.19
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.18
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	97.16
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.15
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.14
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.13
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	97.13
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	97.13
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	97.13
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	97.11
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	97.1
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	97.09
1ydw_A	362	AX110P-like protein; structural genomics, protein	97.09
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	97.09
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	97.09
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	97.05
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	97.05
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	97.04
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	97.03
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	97.02
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	97.0
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.98
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.97
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	96.97
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.97
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	96.96
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.95
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	96.94
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.93
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	96.92
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	96.91
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.91
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	96.88
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	96.86
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.86
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.85
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	96.85
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	96.83
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	96.83
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	96.82
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.81
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	96.8
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	96.8
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	96.8
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	96.78
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.76
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	96.75
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	96.74
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	96.74
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	96.73
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	96.7
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	96.7
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	96.69
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	96.69
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.69
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.69
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	96.68
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.68
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	96.68
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	96.67
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	96.67
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.66
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	96.66
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.65
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	96.64
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	96.62
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.61
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	96.61
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.59
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.59
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.59
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	96.55
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	96.55
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	96.54
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	96.52
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	96.48
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.44
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.43
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	96.43
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	96.42
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	96.41
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	96.4
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.39
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	96.38
4had_A	350	Probable oxidoreductase protein; structural genomi	96.36
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.36
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	96.35
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	96.34
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	96.34
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.31
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	96.31
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.31
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.3
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	96.29
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.29
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.29
1js1_X	324	Transcarbamylase; alpha/beta topology, two domains	96.28
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.23
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	96.22
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	96.21
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	96.2
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.19
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.18
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.18
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.16
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	96.16
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.15
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	96.15
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	96.14
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	96.13
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	96.12
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	96.11
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	96.09
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	96.09
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.07
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	96.07
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	96.06
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	96.05
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	96.04
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	96.03
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	96.01
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	95.99
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	95.99
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	95.99
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	95.98
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	95.97
2csu_A	457	457AA long hypothetical protein; structural genomi	95.97
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	95.93
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	95.91
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	95.91
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	95.9
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	95.9
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	95.9
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	95.88
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	95.86
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	95.86
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.84
3on5_A	362	BH1974 protein; structural genomics, joint center	95.83
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	95.83
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	95.82
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	95.81
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.8
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	95.78
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	95.77
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	95.77
4h3v_A	390	Oxidoreductase domain protein; structural genomics	95.75
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	95.74
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.73
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	95.73
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.7
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	95.7
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	95.68
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.68
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	95.67
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	95.66
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.65
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	95.65
1zq6_A	359	Otcase, ornithine carbamoyltransferase; alpha/beta	95.64
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	95.63
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.63
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.61
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	95.61
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	95.61
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	95.61
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	95.59
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.59
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	95.56
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.55
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	95.55
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	95.55
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	95.54
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.5
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	95.5
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	95.49
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.49
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	95.48
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	95.47
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	95.47
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	95.46
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	95.45
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	95.43
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	95.41
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	95.4
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	95.4
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	95.36
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.35
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	95.34
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	95.31
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	95.3
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	95.3
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.3
1lnq_A	336	MTHK channels, potassium channel related protein;	95.28
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	95.28
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	95.28
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	95.26
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	95.26
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.25
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	95.23
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	95.23
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	95.23
1xq6_A	253	Unknown protein; structural genomics, protein stru	95.22
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	95.22
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	95.22
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.2
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	95.18
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	95.16
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	95.11
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	95.1
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	95.1
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	95.07
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	95.05
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	95.05
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	95.04
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	95.0
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	95.0
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	95.0
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	94.99
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	94.96
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	94.96
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	94.94
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	94.93
2yfk_A	418	Aspartate/ornithine carbamoyltransferase; transcar	94.93
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	94.92
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	94.91
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	94.9
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	94.89
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	94.89
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	94.88
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	94.87
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	94.85
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	94.83
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	94.82
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	94.8
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	94.78
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	94.78
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	94.77
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	94.77
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	94.76
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	94.7
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	94.7
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	94.69
4eye_A	342	Probable oxidoreductase; structural genomics, niai	94.69
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	94.68
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	94.67
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	94.65
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	94.62
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	94.57
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	94.57
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	94.56
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	94.53
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	94.51
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	94.49
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	94.46
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	94.45
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	94.45

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=5.2e-61  Score=443.54  Aligned_cols=272  Identities=25%  Similarity=0.405  Sum_probs=240.7

Q ss_pred             CCCCCchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccC-CCccEEEEcCCCCCcCChhHHhh
Q 043239           13 APGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLL-PALEIVVGSTAGIDHVDLQECRR   91 (286)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~-~~Lk~i~~~~~G~d~id~~~~~~   91 (286)
                      +++...+.|++.|++.......+. ..+.+.+.++++|++++++.+++++++++++ |+||||++.|+|+||||+++|++
T Consensus        37 ~~~~~~~~l~~~~~v~~~~~~~~~-~~~~l~~~~~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~~~G~D~id~~~a~~  115 (345)
T 4g2n_A           37 FTPAIEAELRQRFDLEVNLEDTVL-TPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIATLSVGYDHIDMAAARS  115 (345)
T ss_dssp             CCHHHHHHHHHHSEEEECTTCCCC-CHHHHHHHTTTCSEEEECTTSCBCHHHHHHTTTTCCEEEESSSCCTTBCHHHHHH
T ss_pred             CCHHHHHHHHccCCEEEecCCCCC-CHHHHHHHhcCCeEEEEeCCCCCCHHHHHhhcCCceEEEEcCCcccccCHHHHHh
Confidence            455567778888887654322222 2444556678999999987788999999997 79999999999999999999999


Q ss_pred             cCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCC-CCCCcccCCCCEEEEEcCChHHHHHHHHhccC
Q 043239           92 RGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHG-AYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPF  170 (286)
Q Consensus        92 ~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~-~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~  170 (286)
                      +||.|+|+|++++.+||||++++||++.|+++.+.+.+++|.|.... ....+.+++|++|||||+|.||+.+|+++++|
T Consensus       116 ~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~  195 (345)
T 4g2n_A          116 LGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGF  195 (345)
T ss_dssp             TTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEESCSHHHHHHHHHHHTT
T ss_pred             CCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEEEEeChhHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999999997532 12358899999999999999999999999999


Q ss_pred             CCEEEEECCCCCCC---CCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 043239          171 GCSIAYTSRKKKPG---VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVH  247 (286)
Q Consensus       171 g~~V~~~~r~~~~~---~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~  247 (286)
                      |++|++|||+..+.   .+.....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|++
T Consensus       196 G~~V~~~dr~~~~~~~~~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~  275 (345)
T 4g2n_A          196 GLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIE  275 (345)
T ss_dssp             TCEEEEECSSCCCHHHHTTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHH
T ss_pred             CCEEEEECCCCcchhhhcCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHH
Confidence            99999999986432   233444699999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCeeEEEeeccCCCCCCcCCcccccc--cccccccCC
Q 043239          248 FLVRGSLVELVLMCLRTSLMCQRSCLHWIM--LCCLHMLLW  286 (286)
Q Consensus       248 al~~~~i~ga~lDv~~~e~~~~~~~l~~~~--~~tph~~~~  286 (286)
                      +|++|+|.||+||||+.|| +.+++|+..+  ++|||||++
T Consensus       276 aL~~g~i~gA~LDVf~~EP-~~~~pL~~~~nvilTPHia~~  315 (345)
T 4g2n_A          276 ALRSKHLFAAGLDVFANEP-AIDPRYRSLDNIFLTPHIGSA  315 (345)
T ss_dssp             HHHHTSEEEEEESCCTTTT-SCCTTGGGCTTEEECCSCTTC
T ss_pred             HHHhCCceEEEecCCCCCC-CCCchHHhCCCEEEcCccCcC
Confidence            9999999999999999999 7888888776  999999986

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=6e-61  Score=442.28  Aligned_cols=270  Identities=32%  Similarity=0.492  Sum_probs=215.5

Q ss_pred             CCCCCchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhc
Q 043239           13 APGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRR   92 (286)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~   92 (286)
                      +++...+.|++.|++..+. . ..+.++++.+. +++|++++++.+++++++++++|+||+|++.|+|+||||+++|+++
T Consensus        39 ~~~~~~~~L~~~~~v~~~~-~-~~~~~~~~~~~-~~~d~li~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~id~~~a~~~  115 (340)
T 4dgs_A           39 MMPFVMDELQRNYSVHRLY-Q-AADRPALEAAL-PSIRAVATGGGAGLSNEWMEKLPSLGIIAINGVGTDKVDLARARRR  115 (340)
T ss_dssp             CCHHHHHTHHHHSCCEETT-C-GGGHHHHHHHG-GGCCEEEEETTTCBCHHHHHHCSSCCEEEEESSCCTTBCHHHHHHT
T ss_pred             CCHHHHHHHhcCCcEEEeC-C-CCCHHHHHHHh-CCcEEEEEcCCCCCCHHHHhhCCCCEEEEECCCCccccCHHHHHhC
Confidence            4555667788888877553 1 22334555554 8999999988889999999999999999999999999999999999


Q ss_pred             CeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCC
Q 043239           93 GILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGC  172 (286)
Q Consensus        93 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~  172 (286)
                      ||.|+|+|++++.+|||+++++||++.|+++.+.+.+++|.|.+...++.+.+++|++|||||+|.||+.+|++++++|+
T Consensus       116 gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIGlG~IG~~vA~~l~~~G~  195 (340)
T 4dgs_A          116 NIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGM  195 (340)
T ss_dssp             TCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC------CCCCCCTTCEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             CEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCccccccCCEEEEECCCHHHHHHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999985322346789999999999999999999999999999


Q ss_pred             EEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          173 SIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       173 ~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      +|++|+|+.....+.....++++++++||+|++|+|++++|+++++++.++.||+|++|||+|||+++|+++|+++|++|
T Consensus       196 ~V~~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g  275 (340)
T 4dgs_A          196 SVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSG  275 (340)
T ss_dssp             EEEEECSSCCTTSCCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC--------------C
T ss_pred             EEEEEcCCcccccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcC
Confidence            99999998876555555679999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEeeccCCCCCCcCCcccccc--cccccccCC
Q 043239          253 SLVELVLMCLRTSLMCQRSCLHWIM--LCCLHMLLW  286 (286)
Q Consensus       253 ~i~ga~lDv~~~e~~~~~~~l~~~~--~~tph~~~~  286 (286)
                      +|.||+||||+.||++.+ +|+..+  ++|||+|++
T Consensus       276 ~i~gA~LDVf~~EP~~~~-~L~~~~nvilTPHia~~  310 (340)
T 4dgs_A          276 TIAGAGLDVFVNEPAIRS-EFHTTPNTVLMPHQGSA  310 (340)
T ss_dssp             CSSEEEESCCSSSSSCCS-HHHHSSSEEECSSCSSC
T ss_pred             CceEEEeCCcCCCCCCcc-chhhCCCEEEcCcCCcC
Confidence            999999999999998764 677665  999999986

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=8.8e-61  Score=441.01  Aligned_cols=240  Identities=25%  Similarity=0.392  Sum_probs=219.5

Q ss_pred             cCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHH
Q 043239           46 ASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSI  125 (286)
Q Consensus        46 ~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~  125 (286)
                      ++++|+++++..+++++++++++|+||+|++.|+|+||||+++|+++||.|+|+|++++.+||||+++++|++.|++..+
T Consensus        40 l~~ad~i~v~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~~~  119 (334)
T 3kb6_A           40 LKKAELISVFVYDKLTEELLSKMPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRI  119 (334)
T ss_dssp             HHHCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             hcCCCEEEEeCCCCCCHHHHhcCCCCcEEEECCcccchhcHHHHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhccccc
Confidence            35789999988889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC--CcccccCHHHhhcCCCEE
Q 043239          126 DRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV--SYPFYANVSGLAADSDVL  203 (286)
Q Consensus       126 ~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--~~~~~~~l~e~l~~aDiV  203 (286)
                      ++.++++.|.... ...+++++|+++||||+|.||+.+|+++++|||+|.+||+......  ....+.++++++++||+|
T Consensus       120 ~~~~~~~~~~~~~-~~~~~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~l~ell~~sDiv  198 (334)
T 3kb6_A          120 EDRVKKLNFSQDS-EILARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLKESDVI  198 (334)
T ss_dssp             HHHHHTTCCCCCG-GGCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCEECCHHHHHHHCSEE
T ss_pred             ccccccccccccc-ccccceecCcEEEEECcchHHHHHHHhhcccCceeeecCCccchhhhhcCceecCHHHHHhhCCEE
Confidence            9999999987532 2357899999999999999999999999999999999998765421  223467999999999999


Q ss_pred             EEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCc-----------
Q 043239          204 IVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSC-----------  272 (286)
Q Consensus       204 ~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~-----------  272 (286)
                      ++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||+.||++.+++           
T Consensus       199 slh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~~~  278 (334)
T 3kb6_A          199 SLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNL  278 (334)
T ss_dssp             EECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHH
T ss_pred             EEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCcccccccccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999877663           


Q ss_pred             ----cc--ccccccccccCC
Q 043239          273 ----LH--WIMLCCLHMLLW  286 (286)
Q Consensus       273 ----l~--~~~~~tph~~~~  286 (286)
                          |+  .+.++|||+||+
T Consensus       279 ~~~~L~~~~nvilTPHia~~  298 (334)
T 3kb6_A          279 KILELACKDNVIITPHIAYY  298 (334)
T ss_dssp             HHHHHHTSTTEEECCSCTTC
T ss_pred             cchhhccCCCEEECCchhhC
Confidence                22  345999999986

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=1.2e-59  Score=433.02  Aligned_cols=272  Identities=23%  Similarity=0.351  Sum_probs=240.5

Q ss_pred             CCCCCchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhc
Q 043239           13 APGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRR   92 (286)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~   92 (286)
                      +++...+.|++.++++... .......+.+.+.++++|++++++..++++++++++|+||||++.|+|+||||+++|+++
T Consensus        11 ~~~~~~~~l~~~~~v~~~~-~~~~~~~~~~~~~~~~~d~~i~~~~~~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~   89 (330)
T 4e5n_A           11 VHEEILQLLAPHCELITNQ-TDSTLTREEILRRCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTAR   89 (330)
T ss_dssp             CCHHHHHHHTTTCEEECCC-SSSCCCHHHHHHHHTTCSEEEECTTCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHT
T ss_pred             CCHHHHHHHHhCCeEEEec-CCCCCCHHHHHHHhCCCeEEEEeCCCCCCHHHHhhCCCCcEEEECCCcccccCHHHHHhc
Confidence            4556677888888765433 222212444556678999999977789999999999999999999999999999999999


Q ss_pred             CeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCC
Q 043239           93 GILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGC  172 (286)
Q Consensus        93 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~  172 (286)
                      ||.|+|+|++++.+||||+++++|++.|+++.+++.+++|.|........+.+++|++|||||+|.||+.+|++++++|+
T Consensus        90 gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~  169 (330)
T 4e5n_A           90 GVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGA  169 (330)
T ss_dssp             TCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCCCCSTTCEEEEECCSHHHHHHHHHTTTSCC
T ss_pred             CcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccCCccCCCEEEEEeeCHHHHHHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999974322335789999999999999999999999999999


Q ss_pred             EEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 043239          173 SIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVH  247 (286)
Q Consensus       173 ~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~  247 (286)
                      +|++|+|+.....     +. ...++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|++
T Consensus       170 ~V~~~d~~~~~~~~~~~~g~-~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~  248 (330)
T 4e5n_A          170 TLQYHEAKALDTQTEQRLGL-RQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLA  248 (330)
T ss_dssp             EEEEECSSCCCHHHHHHHTE-EECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHH
T ss_pred             EEEEECCCCCcHhHHHhcCc-eeCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHH
Confidence            9999999874321     22 24589999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCeeEEEeeccCCC-------CCCcCCcccccc--cccccccCC
Q 043239          248 FLVRGSLVELVLMCLRTS-------LMCQRSCLHWIM--LCCLHMLLW  286 (286)
Q Consensus       248 al~~~~i~ga~lDv~~~e-------~~~~~~~l~~~~--~~tph~~~~  286 (286)
                      +|++|+|.||+||||+.|       |++.+++|+..+  ++|||+|++
T Consensus       249 aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia~~  296 (330)
T 4e5n_A          249 ALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSA  296 (330)
T ss_dssp             HHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCTTC
T ss_pred             HHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCCCC
Confidence            999999999999999999       988888888765  999999986

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=2e-59  Score=434.13  Aligned_cols=269  Identities=21%  Similarity=0.290  Sum_probs=235.3

Q ss_pred             CCchhhhC-CCcEEecCCCCCCCchHHHHhccCCceEEEEeCC--CCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhc
Q 043239           16 CFNPPLSE-RFTLLDPLLHSADSTHSFLSRHASSVRAILCLGP--SPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRR   92 (286)
Q Consensus        16 ~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~--~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~   92 (286)
                      .+.+.|++ .++++.+.+.. . ..+.+.+.++++|++++++.  .++++++++++|+||+|++.|+|+||||+++|+++
T Consensus        31 ~~~~~L~~~g~ev~~~~~~~-~-~~~~~~~~~~~ad~li~~~~~~~~~~~~~l~~~p~Lk~i~~~g~G~d~id~~~a~~~  108 (351)
T 3jtm_A           31 GIRDWLESQGHQYIVTDDKE-G-PDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAA  108 (351)
T ss_dssp             GCHHHHHHTTCEEEEESCCS-S-TTSHHHHHTTTCSEEEECTTSCCCBCHHHHHHCSSCCEEEESSSCCTTBCHHHHHHT
T ss_pred             HHHHHHHHCCCEEEEeCCCC-C-CHHHHHHHhCCCEEEEEccCCCCCCCHHHHhhCCCCeEEEEeCeeecccCHHHHHhc
Confidence            34556665 46766554222 1 23345567789999998542  46899999999999999999999999999999999


Q ss_pred             CeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCC
Q 043239           93 GILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGC  172 (286)
Q Consensus        93 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~  172 (286)
                      ||.|+|+|++++.+||||++++||++.|++..+++.+++|.|........+.+++|++|||||+|.||+.+|+++++||+
T Consensus       109 gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~IG~~vA~~l~~~G~  188 (351)
T 3jtm_A          109 GLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGC  188 (351)
T ss_dssp             TCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCC
T ss_pred             CeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEEeCHHHHHHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999974211124678999999999999999999999999999


Q ss_pred             EEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 043239          173 SIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVH  247 (286)
Q Consensus       173 ~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~  247 (286)
                      +|++|+|+..+..     +.....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|++
T Consensus       189 ~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~  268 (351)
T 3jtm_A          189 NLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVD  268 (351)
T ss_dssp             EEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHH
T ss_pred             EEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHH
Confidence            9999999864421     34445699999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCeeEEEeeccCCCCCCcCCcccccc--cccccccCC
Q 043239          248 FLVRGSLVELVLMCLRTSLMCQRSCLHWIM--LCCLHMLLW  286 (286)
Q Consensus       248 al~~~~i~ga~lDv~~~e~~~~~~~l~~~~--~~tph~~~~  286 (286)
                      +|++|+|.||+||||+.||++.+++|+.++  ++|||+||+
T Consensus       269 aL~~g~i~ga~lDV~~~EP~~~~~pL~~~~nvilTPHia~~  309 (351)
T 3jtm_A          269 AVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGT  309 (351)
T ss_dssp             HHHHTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCGGG
T ss_pred             HHHhCCccEEEeCCCCCCCCCCCChhhcCCCEEECCcCCCC
Confidence            999999999999999999999999887765  999999985

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=2e-58  Score=434.04  Aligned_cols=270  Identities=23%  Similarity=0.270  Sum_probs=230.2

Q ss_pred             CCCCCchhhhCC-CcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhh
Q 043239           13 APGCFNPPLSER-FTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRR   91 (286)
Q Consensus        13 ~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~   91 (286)
                      +++...+.|++. |..+.+... .. .++.+.+.++++|++++++.+++++++++++|+||+|++.++|+||||+++|++
T Consensus        24 i~~~~~~~l~~~g~~~v~~~~~-~~-~~~~l~~~~~~~d~l~v~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~IDl~~a~~  101 (416)
T 3k5p_A           24 ISQTAVEYFKSSGYTNVTHLPK-AL-DKADLIKAISSAHIIGIRSRTQLTEEIFAAANRLIAVGCFSVGTNQVELKAARK  101 (416)
T ss_dssp             CCHHHHHHHHHTTCCCEEECSS-CC-CHHHHHHHHTTCSEEEECSSCCBCHHHHHHCTTCCEEEECSSCCTTBCHHHHHH
T ss_pred             CCHHHHHHHHHCCCcEEEECCC-CC-CHHHHHHHccCCEEEEEcCCCCCCHHHHHhCCCcEEEEECccccCccCHHHHHh
Confidence            334445566653 523333312 22 244455667899999888888999999999999999999999999999999999


Q ss_pred             cCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCC
Q 043239           92 RGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFG  171 (286)
Q Consensus        92 ~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g  171 (286)
                      +||.|+|+|++++.+|||++++++|++.|+++.+.+.+++|.|.+..  ..+.+++|+++||||+|.||+.+|+++++||
T Consensus       102 ~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~--~~~~el~gktvGIIGlG~IG~~vA~~l~~~G  179 (416)
T 3k5p_A          102 RGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTA--IGSREVRGKTLGIVGYGNIGSQVGNLAESLG  179 (416)
T ss_dssp             TTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC--TTCCCSTTCEEEEECCSHHHHHHHHHHHHTT
T ss_pred             cCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccC--CCCccCCCCEEEEEeeCHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999999999998642  3478999999999999999999999999999


Q ss_pred             CEEEEECCCCCCCC-CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 043239          172 CSIAYTSRKKKPGV-SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLV  250 (286)
Q Consensus       172 ~~V~~~~r~~~~~~-~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~  250 (286)
                      |+|++||++.+... ......++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++|+++|+++|+
T Consensus       180 ~~V~~yd~~~~~~~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~  259 (416)
T 3k5p_A          180 MTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQ  259 (416)
T ss_dssp             CEEEEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             CEEEEECCcchhcccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHH
Confidence            99999999865443 33456799999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCeeEEEeeccCCCCCCcC----Ccccccc--cccccccCC
Q 043239          251 RGSLVELVLMCLRTSLMCQR----SCLHWIM--LCCLHMLLW  286 (286)
Q Consensus       251 ~~~i~ga~lDv~~~e~~~~~----~~l~~~~--~~tph~~~~  286 (286)
                      +|+|.||+||||+.||++.+    ++|+..+  ++|||+||+
T Consensus       260 ~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~~  301 (416)
T 3k5p_A          260 EGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGS  301 (416)
T ss_dssp             TTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTTC
T ss_pred             cCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCCC
Confidence            99999999999999998765    5565544  999999986

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=7.5e-58  Score=430.96  Aligned_cols=267  Identities=21%  Similarity=0.210  Sum_probs=224.8

Q ss_pred             CCCchhhhCC-C-cEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhc
Q 043239           15 GCFNPPLSER-F-TLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRR   92 (286)
Q Consensus        15 ~~~~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~   92 (286)
                      +...+.|.+. + ++.... . ..+ ++.+.+.++++|++++++.+++++++++++|+||+|++.++|+||||+++|+++
T Consensus        15 ~~~~~~l~~~~~~~v~~~~-~-~~~-~~~l~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~iD~~~a~~~   91 (404)
T 1sc6_A           15 QKALESLRAAGYTNIEFHK-G-ALD-DEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKR   91 (404)
T ss_dssp             HHHHHHHHHTTCCCEEECS-S-CCC-HHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECSSCCTTBCHHHHHHT
T ss_pred             HHHHHHHHhCCCcEEEEcC-C-CCC-HHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCcEEEECCcccCccCHHHHHhC
Confidence            3344556553 5 454332 1 222 344555678999998888889999999999999999999999999999999999


Q ss_pred             CeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCC
Q 043239           93 GILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGC  172 (286)
Q Consensus        93 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~  172 (286)
                      ||.|+|+|++++.+||||++++||++.|+++.+...+++|.|.+.  ...+.+++|+++||||+|.||+.+|++++++||
T Consensus        92 GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~--~~~~~el~gktlGiIGlG~IG~~vA~~l~~~G~  169 (404)
T 1sc6_A           92 GIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKL--AAGSFEARGKKLGIIGYGHIGTQLGILAESLGM  169 (404)
T ss_dssp             TCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-------CCCSTTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCcccc--CCCccccCCCEEEEEeECHHHHHHHHHHHHCCC
Confidence            999999999999999999999999999999999999999999753  234789999999999999999999999999999


Q ss_pred             EEEEECCCCCCCCC-cccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239          173 SIAYTSRKKKPGVS-YPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVR  251 (286)
Q Consensus       173 ~V~~~~r~~~~~~~-~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~  251 (286)
                      +|++|||+.....+ .....++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||+++|+++|+++|++
T Consensus       170 ~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~  249 (404)
T 1sc6_A          170 YVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALAS  249 (404)
T ss_dssp             EEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHT
T ss_pred             EEEEEcCCchhccCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHc
Confidence            99999998765443 34456999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEeeccCCCCCCc----CCcccccc--cccccccCC
Q 043239          252 GSLVELVLMCLRTSLMCQ----RSCLHWIM--LCCLHMLLW  286 (286)
Q Consensus       252 ~~i~ga~lDv~~~e~~~~----~~~l~~~~--~~tph~~~~  286 (286)
                      |+++||+||||+.||++.    +++|+..+  ++|||+|++
T Consensus       250 g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTPHi~~~  290 (404)
T 1sc6_A          250 KHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGS  290 (404)
T ss_dssp             TSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSCC
T ss_pred             CCccEEEEeecCCCCCCccccccchhhcCCCEEECCCCCCC
Confidence            999999999999999864    35666544  999999985

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=2.4e-58  Score=422.42  Aligned_cols=260  Identities=23%  Similarity=0.318  Sum_probs=227.5

Q ss_pred             Cchhh-hCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeE
Q 043239           17 FNPPL-SERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGIL   95 (286)
Q Consensus        17 ~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~   95 (286)
                      ..+.| .+.++.+.+... .+  .+...+.++++|+++++  ..+++++++++|+||||++.|+|+|+||.+++++ ||.
T Consensus        18 ~~~~L~~~~~p~~~~~~~-~~--~~~~~~~~~~ad~li~~--~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~-gI~   91 (324)
T 3hg7_A           18 YERLLKAAHLPHLRILRA-DN--QSDAEKLIGEAHILMAE--PARAKPLLAKANKLSWFQSTYAGVDVLLDARCRR-DYQ   91 (324)
T ss_dssp             HHHHHHHSCCTTEEEEEC-SS--HHHHHHHGGGCSEEEEC--HHHHGGGGGGCTTCCEEEESSSCCGGGSCTTSCC-SSE
T ss_pred             HHHHHhhccCCCeEEEeC-CC--hhHHHHHhCCCEEEEEC--CCCCHHHHhhCCCceEEEECCCCCCccChHHHhC-CEE
Confidence            34556 555543333211 11  33445567899999984  3466889999999999999999999999988754 999


Q ss_pred             EEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEE
Q 043239           96 VTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA  175 (286)
Q Consensus        96 v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~  175 (286)
                      |+|+|++++.+||||+++++|++.|+++.+.+.+++|.|...    .+.+++|++|||||+|.||+++|+++++||++|+
T Consensus        92 v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~----~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~  167 (324)
T 3hg7_A           92 LTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSH----PYQGLKGRTLLILGTGSIGQHIAHTGKHFGMKVL  167 (324)
T ss_dssp             EECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC----CCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred             EEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCC----CCcccccceEEEEEECHHHHHHHHHHHhCCCEEE
Confidence            999999999999999999999999999999999999999853    4678999999999999999999999999999999


Q ss_pred             EECCCCCCCCCc---ccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          176 YTSRKKKPGVSY---PFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       176 ~~~r~~~~~~~~---~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      +|+|+.+.....   ....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|
T Consensus       168 ~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  247 (324)
T 3hg7_A          168 GVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTG  247 (324)
T ss_dssp             EECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTT
T ss_pred             EEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcC
Confidence            999987654432   23568999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEeeccCCCCCCcCCcccccc--cccccccCC
Q 043239          253 SLVELVLMCLRTSLMCQRSCLHWIM--LCCLHMLLW  286 (286)
Q Consensus       253 ~i~ga~lDv~~~e~~~~~~~l~~~~--~~tph~~~~  286 (286)
                      +|+||+||||+.||++.+++|+..+  ++|||+||+
T Consensus       248 ~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~  283 (324)
T 3hg7_A          248 KLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAY  283 (324)
T ss_dssp             SSSEEEESCCSSSSCCTTCTTTTCTTEEECCSCSSC
T ss_pred             CceEEEeccCCCCCCCCCChhhcCCCEEEeCCCccc
Confidence            9999999999999999999997665  999999986

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=6.7e-58  Score=424.21  Aligned_cols=264  Identities=23%  Similarity=0.356  Sum_probs=233.4

Q ss_pred             hhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEE-eCCCCCCHHHhccCCCccEEEEcCCCC----CcCChhHHhhcC
Q 043239           19 PPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILC-LGPSPLTSDTLSLLPALEIVVGSTAGI----DHVDLQECRRRG   93 (286)
Q Consensus        19 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~-~~~~~~~~~~l~~~~~Lk~i~~~~~G~----d~id~~~~~~~g   93 (286)
                      +.+. .+++..+. .... .++.+.+.++++|++++ +...++++++++++|+||+|++.|+|+    ||||+++|+++|
T Consensus        22 ~~l~-~~~v~~~~-~~~~-~~~~l~~~~~~ad~li~~~~~~~~~~~~l~~~~~Lk~I~~~g~G~~~~~d~id~~~a~~~g   98 (352)
T 3gg9_A           22 SLLQ-DHEVKVFN-NTVK-GVGQLAARVADVEALVLIRERTRVTRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKG   98 (352)
T ss_dssp             GGGT-TSEEEECC-SCCC-SHHHHHHHTTTCSEEEECTTSSCBCHHHHTTCTTCCEEEESSCCCCSSSCSBCHHHHHHHT
T ss_pred             hhhc-CceEEEec-CCCC-CHHHHHHHhcCCeEEEEeCCCCCCCHHHHhhCCCCeEEEEeCcccCCccCcccHHHHHhCC
Confidence            3444 47766554 2222 23445566789999998 456889999999999999999999999    999999999999


Q ss_pred             eEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCC--------CCCCcccCCCCEEEEEcCChHHHHHHH
Q 043239           94 ILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHG--------AYPLGSTLGGKRVGIVGLGSIGSEVAK  165 (286)
Q Consensus        94 I~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~--------~~~~~~~l~g~~vgIiG~G~iG~~~A~  165 (286)
                      |.|+|+|++ +.+||||+++++|++.|+++.+++.+++|.|....        ....+.+++|++|||||+|.||+++|+
T Consensus        99 I~V~n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~~l~g~tvGIIGlG~IG~~vA~  177 (352)
T 3gg9_A           99 VVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAG  177 (352)
T ss_dssp             CEEECCCCC-SHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBCCCTTCEEEEECCSHHHHHHHH
T ss_pred             eEEEECCCC-cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCccCCCCEEEEEeECHHHHHHHH
Confidence            999999999 99999999999999999999999999999998642        113578999999999999999999999


Q ss_pred             HhccCCCEEEEECCCCCCC----CCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC
Q 043239          166 RLVPFGCSIAYTSRKKKPG----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALID  241 (286)
Q Consensus       166 ~l~~~g~~V~~~~r~~~~~----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd  241 (286)
                      +++++|++|++|||+....    .++....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|
T Consensus       178 ~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd  257 (352)
T 3gg9_A          178 YGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVE  257 (352)
T ss_dssp             HHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBC
T ss_pred             HHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhc
Confidence            9999999999999975321    244445699999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCeeEEEeeccCCCCCCcCCcccccc--cccccccCC
Q 043239          242 EKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWIM--LCCLHMLLW  286 (286)
Q Consensus       242 ~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~~--~~tph~~~~  286 (286)
                      +++|+++|++|+|.||+||||+.||++.+++|+..+  ++|||+|++
T Consensus       258 ~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~  304 (352)
T 3gg9_A          258 ENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYV  304 (352)
T ss_dssp             TTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEECCSCTTC
T ss_pred             HHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEEECCCCCCC
Confidence            999999999999999999999999999999888765  999999985

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=1.2e-58  Score=424.78  Aligned_cols=236  Identities=19%  Similarity=0.264  Sum_probs=218.5

Q ss_pred             cCCceEEEEeCCCCCCHHHh-ccCCCccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchH
Q 043239           46 ASSVRAILCLGPSPLTSDTL-SLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSS  124 (286)
Q Consensus        46 ~~~~d~i~~~~~~~~~~~~l-~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~  124 (286)
                      ++++|+++++. .++ ++++ +++|+||||++.|+|+|+||+++++++||.|+|+|++++.+||||+++++|++.|++..
T Consensus        38 ~~~ad~l~~~~-~~~-~~~l~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~  115 (324)
T 3evt_A           38 YDQIEVMYGNH-PLL-KTILARPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHA  115 (324)
T ss_dssp             GGGEEEEESCC-THH-HHHHHSTTCCCCEEECSSSCCTTSCHHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             hCCcEEEEECC-cCh-HHHHHhhCCCceEEEECCccccccCHHHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhH
Confidence            46899998864 456 8999 78999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCc---ccccCHHHhhcCC
Q 043239          125 I-DRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY---PFYANVSGLAADS  200 (286)
Q Consensus       125 ~-~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~---~~~~~l~e~l~~a  200 (286)
                      + .+.++++.|....   .+.+++|++|||||+|.||+.+|++++++|++|++|+|+.+.....   ....++++++++|
T Consensus       116 ~~~~~~~~~~W~~~~---~~~~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~a  192 (324)
T 3evt_A          116 AWLNQRGARQWALPM---TTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATA  192 (324)
T ss_dssp             HHHHHTTTCCSSCSS---CCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHC
T ss_pred             HHHHHHhcCCcccCC---CCccccCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhC
Confidence            9 9999999998541   4789999999999999999999999999999999999987665432   2346899999999


Q ss_pred             CEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCcccccc--c
Q 043239          201 DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWIM--L  278 (286)
Q Consensus       201 DiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~~--~  278 (286)
                      |+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||+.||++.+++|+..+  +
T Consensus       193 DvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvi  272 (324)
T 3evt_A          193 NFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVL  272 (324)
T ss_dssp             SEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEE
T ss_pred             CEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998766  9


Q ss_pred             ccccccCC
Q 043239          279 CCLHMLLW  286 (286)
Q Consensus       279 ~tph~~~~  286 (286)
                      +|||+||+
T Consensus       273 lTPHia~~  280 (324)
T 3evt_A          273 ITPHISGQ  280 (324)
T ss_dssp             ECCSCTTC
T ss_pred             EcCccccC
Confidence            99999985

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=1.8e-57  Score=422.26  Aligned_cols=266  Identities=18%  Similarity=0.270  Sum_probs=227.4

Q ss_pred             CCCCchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEc-CCCCCcCChhHHhhc
Q 043239           14 PGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGS-TAGIDHVDLQECRRR   92 (286)
Q Consensus        14 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~-~~G~d~id~~~~~~~   92 (286)
                      .+...+.|.+.++++...   +.+.++++.+...++++++.  ..++++++++++|+||+|++. ++|+||||+++|+++
T Consensus        45 ~~~~~~~L~~~~~v~~~~---~~~~~e~~~~~~~~~~~i~~--~~~i~~~~l~~~p~Lk~I~~~~~~G~d~iD~~~a~~~  119 (365)
T 4hy3_A           45 SDEARAALHSKYEIVEAD---PENIAGLGDDILGRARYIIG--QPPLSAETLARMPALRSILNVESNLLNNMPYEVLFQR  119 (365)
T ss_dssp             CHHHHHHHHHHSEEEECC---GGGGGGSCTTHHHHEEEEEE--CCCCCHHHHTTCTTCCEEECCSSSCCSCSCTTHHHHS
T ss_pred             CHHHHHHHhCCcEEEECC---CCChHHHHHHhhCCeEEEEe--CCCCCHHHHhhCCCCeEEEEecccccCcccHHHHhcC
Confidence            344567788888887433   22223333344457788775  368999999999999999975 899999999999999


Q ss_pred             CeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCC-CCCCcccCCCCEEEEEcCChHHHHHHHHhccCC
Q 043239           93 GILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHG-AYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFG  171 (286)
Q Consensus        93 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~-~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g  171 (286)
                      ||.|+|+|++++.+||||+++++|++.|++..+.+.+++|.|.... ....+.+++|++|||||+|.||+.+|+++++||
T Consensus       120 GI~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~w~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~~fG  199 (365)
T 4hy3_A          120 GIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIAGSEIGIVGFGDLGKALRRVLSGFR  199 (365)
T ss_dssp             CCEEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCCCCSSSSTTSCCCSSSSEEEEECCSHHHHHHHHHHTTSC
T ss_pred             CeEEEeCCCccchHHHHHHHHHHHHHHhchhHHHHHHHcCCccccccccccccccCCCEEEEecCCcccHHHHHhhhhCC
Confidence            9999999999999999999999999999999999999999854221 123578999999999999999999999999999


Q ss_pred             CEEEEECCCCCCC----CCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 043239          172 CSIAYTSRKKKPG----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVH  247 (286)
Q Consensus       172 ~~V~~~~r~~~~~----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~  247 (286)
                      ++|++||++....    .++ ...++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|++
T Consensus       200 ~~V~~~d~~~~~~~~~~~g~-~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~  278 (365)
T 4hy3_A          200 ARIRVFDPWLPRSMLEENGV-EPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMA  278 (365)
T ss_dssp             CEEEEECSSSCHHHHHHTTC-EECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHH
T ss_pred             CEEEEECCCCCHHHHhhcCe-eeCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHH
Confidence            9999999985432    122 35699999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCeeEEEeeccCCCCCCcCCcccccc--cccccccCC
Q 043239          248 FLVRGSLVELVLMCLRTSLMCQRSCLHWIM--LCCLHMLLW  286 (286)
Q Consensus       248 al~~~~i~ga~lDv~~~e~~~~~~~l~~~~--~~tph~~~~  286 (286)
                      +|++|+|. |+||||+.||++.+++|+..+  ++|||+||+
T Consensus       279 aL~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvilTPHia~~  318 (365)
T 4hy3_A          279 AVSSGHIV-AASDVYPEEPLPLDHPVRSLKGFIRSAHRAGA  318 (365)
T ss_dssp             HHHTTSSE-EEESCCSSSSCCTTCGGGTCTTEEECCSCSSC
T ss_pred             HHHcCCce-EEeeCCCCCCCCCCChhhcCCCEEECCccccC
Confidence            99999998 899999999999999888766  999999986

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=3.4e-57  Score=417.74  Aligned_cols=244  Identities=18%  Similarity=0.266  Sum_probs=217.4

Q ss_pred             HHhccCCceEEEEeCCCCCCHH-HhccCC--CccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHH
Q 043239           42 LSRHASSVRAILCLGPSPLTSD-TLSLLP--ALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDV  118 (286)
Q Consensus        42 ~~~~~~~~d~i~~~~~~~~~~~-~l~~~~--~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~  118 (286)
                      +.+.++++|+++++..++++++ +++++|  +||+|++.|+|+||||+++|+++||.|+|+|++++.+||||+++++|++
T Consensus        39 ~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~  118 (343)
T 2yq5_A           39 TVDLAEGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGLRIVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYL  118 (343)
T ss_dssp             GGGGGTTCSEEEECCSSCBCCHHHHHHHHHTTCCEEEESSSCCTTBCSSTTCC--CEEECCSCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEEcCCCCcCHHHHHHhccccCceEEEECceeecccchhHHHhCCEEEEECCCCCcHHHHHHHHHHHHHH
Confidence            4466789999999877899999 999986  6999999999999999999999999999999999999999999999999


Q ss_pred             HhcchHHHHHHH-cCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-CcccccCHHHh
Q 043239          119 LRRVSSIDRFVR-NGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-SYPFYANVSGL  196 (286)
Q Consensus       119 ~R~~~~~~~~~~-~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-~~~~~~~l~e~  196 (286)
                      .|++..+.+.++ +|.|.... ...+++++|++|||||+|.||+.+|+++++||++|++|+|+.+... ......+++++
T Consensus       119 ~R~~~~~~~~~~~~g~~~w~~-~~~~~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~el  197 (343)
T 2yq5_A          119 LRKIGEFRYRMDHDHDFTWPS-NLISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTV  197 (343)
T ss_dssp             HHTHHHHHHHHHHHCCCCCCG-GGCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGGGTTTCEECCHHHH
T ss_pred             HhchHHHHHHHHHcCCccccc-CCCccccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhhhhccccccCHHHH
Confidence            999999999999 88775421 2357899999999999999999999999999999999999876432 22334599999


Q ss_pred             hcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCC--CCcC----
Q 043239          197 AADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSL--MCQR----  270 (286)
Q Consensus       197 l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~--~~~~----  270 (286)
                      +++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||+.||  ++.+    
T Consensus       198 l~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~  277 (343)
T 2yq5_A          198 LKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTD  277 (343)
T ss_dssp             HHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCT
T ss_pred             HhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCCCccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999  4444    


Q ss_pred             -------Ccccccc--cccccccCC
Q 043239          271 -------SCLHWIM--LCCLHMLLW  286 (286)
Q Consensus       271 -------~~l~~~~--~~tph~~~~  286 (286)
                             ++|+..+  ++|||+|++
T Consensus       278 ~~l~~~~~pL~~~~nvilTPHia~~  302 (343)
T 2yq5_A          278 SEIPEDYKTLAKMPNVVITPHSAFY  302 (343)
T ss_dssp             TTSCHHHHHHTTCTTEEECSSCTTC
T ss_pred             cccccchhHHhcCCCEEECCccccc
Confidence                   2455444  999999986

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=2e-55  Score=401.96  Aligned_cols=269  Identities=29%  Similarity=0.432  Sum_probs=237.1

Q ss_pred             CCCCCchhhhCC-CcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhh
Q 043239           13 APGCFNPPLSER-FTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRR   91 (286)
Q Consensus        13 ~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~   91 (286)
                      +++...+.+.+. +++.... .... ..+.+.+.++++|+++++...++++++++++|+||||++.|+|+||||++++++
T Consensus         9 ~~~~~~~~l~~~g~~v~~~~-~~~~-~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~   86 (311)
T 2cuk_A            9 LPGKALDRLRERGLEVEVHR-GLFL-PKAELLKRVEGAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGVDHVDLEAARE   86 (311)
T ss_dssp             CSSSTTHHHHHTTCEEEECC-SSCC-CHHHHHHHHTTCSEEECCTTSCBCHHHHHHSTTCCEEECSSSCCTTBCHHHHHT
T ss_pred             CCHHHHHHHHhcCCeEEEec-CCCC-CHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEECCcCccccCHHHHHh
Confidence            445567777776 7765433 2222 234455567899999987667899999999999999999999999999999999


Q ss_pred             cCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCC-CCCCcccCCCCEEEEEcCChHHHHHHHHhccC
Q 043239           92 RGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHG-AYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPF  170 (286)
Q Consensus        92 ~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~-~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~  170 (286)
                      +||.|+|+|++++.+||||++++||++.|+++.+++.+++|.|.... ....+.++.|++|||||+|.||+.+|++++++
T Consensus        87 ~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~  166 (311)
T 2cuk_A           87 RGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAF  166 (311)
T ss_dssp             TTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHHT
T ss_pred             CCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECHHHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999999996321 11247799999999999999999999999999


Q ss_pred             CCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 043239          171 GCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLV  250 (286)
Q Consensus       171 g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~  250 (286)
                      |++|++|+|+.++.. . ...++++++++||+|++|+|.+++|+++++++.++.||+|+++||+|||+++|+++|.++|+
T Consensus       167 G~~V~~~d~~~~~~~-~-~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~  244 (311)
T 2cuk_A          167 GMRVVYHARTPKPLP-Y-PFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR  244 (311)
T ss_dssp             TCEEEEECSSCCSSS-S-CBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT
T ss_pred             CCEEEEECCCCcccc-c-ccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh
Confidence            999999999876654 2 35689999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCeeEEEeeccCCCCCCcCCcccccc--cccccccCC
Q 043239          251 RGSLVELVLMCLRTSLMCQRSCLHWIM--LCCLHMLLW  286 (286)
Q Consensus       251 ~~~i~ga~lDv~~~e~~~~~~~l~~~~--~~tph~~~~  286 (286)
                       |+|.||++|||+.||++.+++|+...  ++|||++++
T Consensus       245 -g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~  281 (311)
T 2cuk_A          245 -GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSA  281 (311)
T ss_dssp             -TTSSEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTC
T ss_pred             -CcCCEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCC
Confidence             99999999999999998888888765  999999985

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=1.1e-55  Score=413.89  Aligned_cols=246  Identities=24%  Similarity=0.339  Sum_probs=222.1

Q ss_pred             HHHhccCCceEEEEeC--CCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHH
Q 043239           41 FLSRHASSVRAILCLG--PSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDV  118 (286)
Q Consensus        41 ~~~~~~~~~d~i~~~~--~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~  118 (286)
                      .+.+.+.++|++++..  ..++++++++++|+||+|++.++|+||||+++|+++||.|+|+|++++.+||||++++||++
T Consensus        82 ~l~~~l~~ad~li~~~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~~g~~~~~VAE~al~liL~~  161 (393)
T 2nac_A           82 VFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSL  161 (393)
T ss_dssp             HHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCCCEEEEcCccCCCCCHHHHhhCCCCcEEEEcCccccccCHHHHhcCCEEEEeCCCcccHHHHHHHHHHHHHH
Confidence            3445568999999853  35799999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCH
Q 043239          119 LRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANV  193 (286)
Q Consensus       119 ~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l  193 (286)
                      .|++..+++.+++|.|........+.+++|++|||||+|.||+.+|+++++||++|++|+++..+..     +.....++
T Consensus       162 ~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l  241 (393)
T 2nac_A          162 VRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATR  241 (393)
T ss_dssp             HTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSH
T ss_pred             HhccHHHHHHHHcCCCCccccccCCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCH
Confidence            9999999999999999632111236789999999999999999999999999999999999865422     33334689


Q ss_pred             HHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCcc
Q 043239          194 SGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCL  273 (286)
Q Consensus       194 ~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l  273 (286)
                      ++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||+.||++.+++|
T Consensus       242 ~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~pL  321 (393)
T 2nac_A          242 EDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPW  321 (393)
T ss_dssp             HHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCTTCGG
T ss_pred             HHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCCCCCChh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cccc--cccccccCC
Q 043239          274 HWIM--LCCLHMLLW  286 (286)
Q Consensus       274 ~~~~--~~tph~~~~  286 (286)
                      +..+  ++|||+|++
T Consensus       322 ~~~~nvilTPHia~~  336 (393)
T 2nac_A          322 RTMPYNGMTPHISGT  336 (393)
T ss_dssp             GTSTTBCCCCSCTTC
T ss_pred             HcCCCEEECCCCCcC
Confidence            8765  999999985

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=3.6e-56  Score=414.81  Aligned_cols=268  Identities=21%  Similarity=0.246  Sum_probs=229.9

Q ss_pred             CchhhhC-CCcEEecCCCCCCCchHHHHhccCCceEEEEeC--CCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhc-
Q 043239           17 FNPPLSE-RFTLLDPLLHSADSTHSFLSRHASSVRAILCLG--PSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRR-   92 (286)
Q Consensus        17 ~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~--~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~-   92 (286)
                      ..+.+.+ .+++..+. ..... .+.+.+.++++|+++++.  ..++++++++++|+||+|++.++|+||||+++|+++ 
T Consensus        30 ~~~~l~~~~~~v~~~~-~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~~  107 (364)
T 2j6i_A           30 IANWLKDQGHELITTS-DKEGG-NSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTG  107 (364)
T ss_dssp             CHHHHHHTTCEEEEES-CCSST-TSHHHHHGGGCSEEEECTTSCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHHT
T ss_pred             HHHHHHhCCCEEEEcC-CCCCC-HHHHHHHhhCCeEEEecCcCCCCCCHHHHhhCCCCeEEEECCcccccccHHHHHhcC
Confidence            4455554 35655443 22112 233445668999998853  246899999999999999999999999999999999 


Q ss_pred             -CeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCC
Q 043239           93 -GILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFG  171 (286)
Q Consensus        93 -gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g  171 (286)
                       ||.|+|+|++++.+||||++++||++.|+++.+++.+++|.|........+.+++|++|||||+|.||+.+|++++++|
T Consensus       108 ~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~tvgIIG~G~IG~~vA~~l~~~G  187 (364)
T 2j6i_A          108 KKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFN  187 (364)
T ss_dssp             CCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGC
T ss_pred             CCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCcCcccCCcccCCCCEEEEECcCHHHHHHHHHHHhCC
Confidence             9999999999999999999999999999999999999999996311012467899999999999999999999999999


Q ss_pred             CE-EEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHH
Q 043239          172 CS-IAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKEL  245 (286)
Q Consensus       172 ~~-V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al  245 (286)
                      ++ |++|+|+..+..     +.....++++++++||+|++|+|.+++|+++++++.|+.||+|++|||+|||+++|+++|
T Consensus       188 ~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL  267 (364)
T 2j6i_A          188 PKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDV  267 (364)
T ss_dssp             CSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHH
T ss_pred             CcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHH
Confidence            97 999998775421     333346899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCeeEEEeeccCCCCCCcCCcccc-------cccccccccCC
Q 043239          246 VHFLVRGSLVELVLMCLRTSLMCQRSCLHW-------IMLCCLHMLLW  286 (286)
Q Consensus       246 ~~al~~~~i~ga~lDv~~~e~~~~~~~l~~-------~~~~tph~~~~  286 (286)
                      +++|++|+|.||+||||+.||++.+++|+.       +.++|||+|++
T Consensus       268 ~~aL~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvilTPHia~~  315 (364)
T 2j6i_A          268 AAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGT  315 (364)
T ss_dssp             HHHHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCEEECCSCGGG
T ss_pred             HHHHHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcEEECCccCcC
Confidence            999999999999999999999999888764       46999999985

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=6.9e-56  Score=408.38  Aligned_cols=244  Identities=24%  Similarity=0.377  Sum_probs=221.5

Q ss_pred             hHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHH
Q 043239           39 HSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDV  118 (286)
Q Consensus        39 ~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~  118 (286)
                      .+.+.+.++++|+++++..+++++++++++|+||||++.|+|+|+||+++++++||.|+|+|++++.+||||+++++|++
T Consensus        58 ~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~  137 (335)
T 2g76_A           58 KEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCL  137 (335)
T ss_dssp             HHHHHHHGGGCSEEEECSSSCBCHHHHHHCSSCCEEEESSSSCTTBCHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCceEEEEcCCCCCCHHHHhhCCCCcEEEECCCCcchhChHHHHhCCeEEEECCCccchHHHHHHHHHHHHH
Confidence            33444566899999998777899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC----CCcccccCHH
Q 043239          119 LRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG----VSYPFYANVS  194 (286)
Q Consensus       119 ~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~----~~~~~~~~l~  194 (286)
                      .|+++.+++.+++|.|.+.  ...+.++.|++|||||+|.||+.+|++++++|++|++|||+..+.    .+.. ..+++
T Consensus       138 ~R~~~~~~~~~~~g~W~~~--~~~~~~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~  214 (335)
T 2g76_A          138 ARQIPQATASMKDGKWERK--KFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQ-QLPLE  214 (335)
T ss_dssp             HHTHHHHHHHHHTTCCCTG--GGCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHHHHHHTTCE-ECCHH
T ss_pred             HhchHHHHHHHHcCCCCcc--CCCCcCCCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhhhhhcCce-eCCHH
Confidence            9999999999999999743  124678999999999999999999999999999999999976542    1222 35899


Q ss_pred             HhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCccc
Q 043239          195 GLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLH  274 (286)
Q Consensus       195 e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~  274 (286)
                      +++++||+|++|+|.+++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||+.|| +.+++|+
T Consensus       215 ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP-~~~~~L~  293 (335)
T 2g76_A          215 EIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALV  293 (335)
T ss_dssp             HHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSS-CSCCHHH
T ss_pred             HHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEeecCCCC-CCCchHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999 4567777


Q ss_pred             ccc--cccccccCC
Q 043239          275 WIM--LCCLHMLLW  286 (286)
Q Consensus       275 ~~~--~~tph~~~~  286 (286)
                      ..+  ++|||+|++
T Consensus       294 ~~~nvilTPH~~~~  307 (335)
T 2g76_A          294 DHENVISCPHLGAS  307 (335)
T ss_dssp             HSTTEEECSSCTTC
T ss_pred             hCCCEEECCcCCCC
Confidence            554  999999986

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=3.3e-56  Score=410.86  Aligned_cols=243  Identities=19%  Similarity=0.259  Sum_probs=218.0

Q ss_pred             HHhccCCceEEEEeCCCCCCHHHhccCCC--ccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHH
Q 043239           42 LSRHASSVRAILCLGPSPLTSDTLSLLPA--LEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVL  119 (286)
Q Consensus        42 ~~~~~~~~d~i~~~~~~~~~~~~l~~~~~--Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~  119 (286)
                      +.+.++++|+++++..+++++++++++|+  ||||++.|+|+||||+++++++||.|+|+|++++.+||||++++||++.
T Consensus        40 ~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~  119 (333)
T 1j4a_A           40 TVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARIL  119 (333)
T ss_dssp             TGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEEcCCCCCCHHHHHhccccCCeEEEECCcccccccHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHH
Confidence            44556899999997777899999999998  9999999999999999999999999999999999999999999999999


Q ss_pred             hcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC--CcccccCHHHhh
Q 043239          120 RRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV--SYPFYANVSGLA  197 (286)
Q Consensus       120 R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--~~~~~~~l~e~l  197 (286)
                      |++..+++.+++|.|...  ...+.++.|++|||||+|.||+.+|++++++|++|++|+++.++..  ......++++++
T Consensus       120 R~~~~~~~~~~~g~w~~~--~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~l~ell  197 (333)
T 1j4a_A          120 RQDKAMDEKVARHDLRWA--PTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLY  197 (333)
T ss_dssp             HTHHHHHHHHHTTBCCCT--TCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHH
T ss_pred             cCHHHHHHHHHcCCCccC--CcccccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchhHHhhCeecCCHHHHH
Confidence            999999999999999643  2357899999999999999999999999999999999999875421  122234899999


Q ss_pred             cCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCC--CCcCC----
Q 043239          198 ADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSL--MCQRS----  271 (286)
Q Consensus       198 ~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~--~~~~~----  271 (286)
                      ++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||+.||  ++.++    
T Consensus       198 ~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~  277 (333)
T 1j4a_A          198 KQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKE  277 (333)
T ss_dssp             HHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSC
T ss_pred             hhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCcccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999998  34433    


Q ss_pred             -------cccc--cccccccccCC
Q 043239          272 -------CLHW--IMLCCLHMLLW  286 (286)
Q Consensus       272 -------~l~~--~~~~tph~~~~  286 (286)
                             +|+.  +.++|||+|++
T Consensus       278 ~~~p~~~~L~~~~nvilTPHia~~  301 (333)
T 1j4a_A          278 FPDARLADLIARPNVLVTPKTAFY  301 (333)
T ss_dssp             CSCHHHHHHHHCTTEEECSSCTTC
T ss_pred             CCccchhhHHhCCCEEECCccccC
Confidence                   3554  44999999986

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=1.7e-55  Score=405.65  Aligned_cols=270  Identities=39%  Similarity=0.651  Sum_probs=238.7

Q ss_pred             CCCCCchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhc
Q 043239           13 APGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRR   92 (286)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~   92 (286)
                      +++...+.+.+.+++..+. . ....++++.+.++++|++++++..++++++++++|+||+|++.|+|+||||+++++++
T Consensus        32 ~~~~~~~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~  109 (333)
T 3ba1_A           32 MSTYLEQELDKRFKLFRYW-T-QPAQRDFLALQAESIRAVVGNSNAGADAELIDALPKLEIVSSFSVGLDKVDLIKCEEK  109 (333)
T ss_dssp             CCHHHHHHHHHHSEEEEGG-G-CSSHHHHHHHHTTTEEEEEECSSSCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHH
T ss_pred             CCHHHHHHHHhcCCEEEec-C-CCChHHHHHHHhCCCEEEEEcCCCCCCHHHHhhCCCCcEEEEcCccccccCHHHHHhC
Confidence            3444556677777765543 1 1234555666678999999877778999999999999999999999999999999999


Q ss_pred             CeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCC
Q 043239           93 GILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGC  172 (286)
Q Consensus        93 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~  172 (286)
                      ||.|+|+|++++.+||||++++||++.|++..+.+.+++|.|... ....+.++.|++|||||+|.||+.+|++++++|+
T Consensus       110 gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~-~~~~~~~l~g~~vgIIG~G~iG~~vA~~l~~~G~  188 (333)
T 3ba1_A          110 GVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKFG-DFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDC  188 (333)
T ss_dssp             TCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGC-CCCCCCCCTTCCEEEECCSHHHHHHHHHHHTTTC
T ss_pred             CcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcc-ccccccccCCCEEEEECCCHHHHHHHHHHHHCCC
Confidence            999999999999999999999999999999999999999999642 2235789999999999999999999999999999


Q ss_pred             EEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          173 SIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       173 ~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      +|++|+|+.+...+.....++++++++||+|++|+|.+++++++++++.++.||+|++|||+|||.++|+++|+++|++|
T Consensus       189 ~V~~~dr~~~~~~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g  268 (333)
T 3ba1_A          189 PISYFSRSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEG  268 (333)
T ss_dssp             CEEEECSSCCTTCCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHT
T ss_pred             EEEEECCCchhccCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcC
Confidence            99999998876555555678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEeeccCCCCCCcCCcccccc--cccccccCC
Q 043239          253 SLVELVLMCLRTSLMCQRSCLHWIM--LCCLHMLLW  286 (286)
Q Consensus       253 ~i~ga~lDv~~~e~~~~~~~l~~~~--~~tph~~~~  286 (286)
                      +++||++|||+.||.+. ++|+..+  ++|||+|++
T Consensus       269 ~i~ga~lDv~~~EP~~~-~~L~~~~nviltPH~~~~  303 (333)
T 3ba1_A          269 RLGGAGLDVFEREPEVP-EKLFGLENVVLLPHVGSG  303 (333)
T ss_dssp             SSCEEEESCCTTTTCCC-GGGGGCTTEEECSSCTTC
T ss_pred             CCeEEEEecCCCCCCCc-chhhcCCCEEECCcCCCC
Confidence            99999999999999766 6676655  999999985

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=7.9e-56  Score=404.83  Aligned_cols=232  Identities=22%  Similarity=0.256  Sum_probs=212.7

Q ss_pred             CCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcC-C-hhH---HhhcCeEEEecCCCC-CcChHHHHHHHHHHHHh
Q 043239           47 SSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHV-D-LQE---CRRRGILVTNAGNAF-SEDGADYVVGLLVDVLR  120 (286)
Q Consensus        47 ~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i-d-~~~---~~~~gI~v~n~~~~~-~~~vAE~~l~~~L~~~R  120 (286)
                      +++|+++++.   .+++++++ |+||||++.|+|+||| | +++   +.++||.|+|+++.. +.+||||+++++|++.|
T Consensus        40 ~~ad~~i~~~---~~~~~l~~-~~Lk~I~~~~aG~d~i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R  115 (315)
T 3pp8_A           40 NPADYALVWQ---PPVEMLAG-RRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFR  115 (315)
T ss_dssp             SCCSEEEESS---CCHHHHTT-CCCSEEEESSSCCHHHHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHT
T ss_pred             cCcEEEEECC---CCHHHhCC-CCceEEEECCEecccccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHh
Confidence            5899999964   57999999 9999999999999999 7 876   788999999998764 79999999999999999


Q ss_pred             cchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCccc---ccCHHHhh
Q 043239          121 RVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF---YANVSGLA  197 (286)
Q Consensus       121 ~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~---~~~l~e~l  197 (286)
                      +++.+++.+++|.|...    .+++++|++|||||+|.||+.+|++++++|++|++|+|+.+...+...   ..++++++
T Consensus       116 ~~~~~~~~~~~g~W~~~----~~~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell  191 (315)
T 3pp8_A          116 RFDDYQALKNQALWKPL----PEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFL  191 (315)
T ss_dssp             THHHHHHHHHTTCCCCC----CCCCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHH
T ss_pred             CChHHHHHHHhcccCCC----CCCCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHH
Confidence            99999999999999853    467899999999999999999999999999999999998876554332   26899999


Q ss_pred             cCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCcccccc
Q 043239          198 ADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWIM  277 (286)
Q Consensus       198 ~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~~  277 (286)
                      ++||+|++|+|++++|+++++++.|++||+|++|||+|||+++|+++|+++|++|+|.||+||||+.||++.+++|+..+
T Consensus       192 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~  271 (315)
T 3pp8_A          192 NQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHP  271 (315)
T ss_dssp             HTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGCT
T ss_pred             hhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998665


Q ss_pred             --cccccccCC
Q 043239          278 --LCCLHMLLW  286 (286)
Q Consensus       278 --~~tph~~~~  286 (286)
                        ++|||+|++
T Consensus       272 nvilTPHia~~  282 (315)
T 3pp8_A          272 RVAMTPHIAAV  282 (315)
T ss_dssp             TEEECSSCSSC
T ss_pred             CEEECCCCCcc
Confidence              999999986

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=4.9e-55  Score=400.94  Aligned_cols=271  Identities=23%  Similarity=0.328  Sum_probs=234.0

Q ss_pred             CCCCchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCC-ccEEEEcCCCCCcCChhHHhhc
Q 043239           14 PGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPA-LEIVVGSTAGIDHVDLQECRRR   92 (286)
Q Consensus        14 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~-Lk~i~~~~~G~d~id~~~~~~~   92 (286)
                      ++...+.+.+.+++.........+ .+.+.+.++++|+++++..+++++++++++|+ ||||++.|+|+||||+++++++
T Consensus        11 ~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~Lk~I~~~~~G~d~id~~~~~~~   89 (320)
T 1gdh_A           11 PEAAMARARESYDVIAHGDDPKIT-IDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKAR   89 (320)
T ss_dssp             CHHHHHHHHTTSEEEECCSTTCCC-HHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESSCCTTBCHHHHHHT
T ss_pred             CHHHHHHHHhcCCEEEecCCCCCC-HHHHHHHhcCCEEEEECCCCCCCHHHHHhCCccceEEEECCcccccccHHHHHhC
Confidence            334456677767754332111122 34455567899999998767899999999999 9999999999999999999999


Q ss_pred             CeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCC-CCCCcccCCCCEEEEEcCChHHHHHHHHhccCC
Q 043239           93 GILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHG-AYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFG  171 (286)
Q Consensus        93 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~-~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g  171 (286)
                      ||.|+|+|++++.+||||++++||++.|+++.+++.+++|.|.... ....+.++.|++|||||+|.||+++|++++++|
T Consensus        90 gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G  169 (320)
T 1gdh_A           90 GIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFD  169 (320)
T ss_dssp             TCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTT
T ss_pred             CcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEECcCHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999999999999996321 123577999999999999999999999999999


Q ss_pred             CEEEEECC-CCCCC----CCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 043239          172 CSIAYTSR-KKKPG----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELV  246 (286)
Q Consensus       172 ~~V~~~~r-~~~~~----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~  246 (286)
                      ++|++||+ +.++.    .+.....++++++++||+|++|+|.+++|+++++++.++.||+|++|||+|||+++|+++|.
T Consensus       170 ~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~  249 (320)
T 1gdh_A          170 MDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVV  249 (320)
T ss_dssp             CEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHH
T ss_pred             CEEEEECCCCcChhhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHH
Confidence            99999999 76542    13333348999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCeeEEEeeccCCCCCCcCCcccccc--cccccccCC
Q 043239          247 HFLVRGSLVELVLMCLRTSLMCQRSCLHWIM--LCCLHMLLW  286 (286)
Q Consensus       247 ~al~~~~i~ga~lDv~~~e~~~~~~~l~~~~--~~tph~~~~  286 (286)
                      ++|++|+|.||+||||+.|| +.+++|+...  ++|||++++
T Consensus       250 ~aL~~g~i~gA~lDv~~~eP-~~~~~L~~~~nviltPH~~~~  290 (320)
T 1gdh_A          250 AALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPHIGSA  290 (320)
T ss_dssp             HHHHHTSEEEEEESCCTTTT-SCCTTGGGCTTEEECSSCTTC
T ss_pred             HHHHhCCCcEEEEeCCCCCC-CCCChhhhCCCEEECCcCCcC
Confidence            99999999999999999999 7777787655  999999985

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=1.4e-55  Score=406.33  Aligned_cols=246  Identities=17%  Similarity=0.256  Sum_probs=220.3

Q ss_pred             HHHHhccCCceEEEEeCCCCCCHHHhccCCC--ccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHH
Q 043239           40 SFLSRHASSVRAILCLGPSPLTSDTLSLLPA--LEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVD  117 (286)
Q Consensus        40 ~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~--Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~  117 (286)
                      +.+.+.++++|+++++...++++++++++|+  ||+|++.|+|+||||+++++++||.|+|+|++++.+||||++++||+
T Consensus        37 ~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~  116 (331)
T 1xdw_A           37 KETAEMAAGFDAVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMM  116 (331)
T ss_dssp             HHHHHTTTTCSEEEECTTCCBCHHHHHHHHHHTCCEEEESSSCCTTBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCeEEEEeCCCCCCHHHHhhCcccCceEEEEccccccccCHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHH
Confidence            3455567899999998778899999999998  99999999999999999999999999999999999999999999999


Q ss_pred             HHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-CcccccCHHHh
Q 043239          118 VLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-SYPFYANVSGL  196 (286)
Q Consensus       118 ~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-~~~~~~~l~e~  196 (286)
                      +.|+++.+++.+++|.|.... ...+.++.|++|||||+|.||+.+|++++++|++|++|+|+..+.. ......+++++
T Consensus       117 ~~R~~~~~~~~~~~g~w~~~~-~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~el  195 (331)
T 1xdw_A          117 LLRHTAYTTSRTAKKNFKVDA-FMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGIEDYCTQVSLDEV  195 (331)
T ss_dssp             HHTTHHHHHHHHTTTCCCCCS-TTCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSCTTTCEECCHHHH
T ss_pred             HHhCHHHHHHHHHcCCCcccc-CcCccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHHHHhccccCCHHHH
Confidence            999999999999999986311 1357889999999999999999999999999999999999876532 11234589999


Q ss_pred             hcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCC--CcC----
Q 043239          197 AADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLM--CQR----  270 (286)
Q Consensus       197 l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~--~~~----  270 (286)
                      +++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||+.||+  +.+    
T Consensus       196 l~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~  275 (331)
T 1xdw_A          196 LEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQ  275 (331)
T ss_dssp             HHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTS
T ss_pred             HhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCCCCCccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999985  222    


Q ss_pred             ---C----ccccc---ccccccccCC
Q 043239          271 ---S----CLHWI---MLCCLHMLLW  286 (286)
Q Consensus       271 ---~----~l~~~---~~~tph~~~~  286 (286)
                         +    +|+..   .++|||+|++
T Consensus       276 ~~~~~~~~~L~~~~~nvilTPHia~~  301 (331)
T 1xdw_A          276 KLENPLFEKLVDLYPRVLITPHLGSY  301 (331)
T ss_dssp             CCSSHHHHHHHHTTTTEEECCSCTTC
T ss_pred             ccCccchHHHHhCCCCEEEcCccccC
Confidence               2    46544   5999999986

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=3e-55  Score=400.19  Aligned_cols=244  Identities=27%  Similarity=0.436  Sum_probs=223.7

Q ss_pred             HHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHH
Q 043239           40 SFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVL  119 (286)
Q Consensus        40 ~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~  119 (286)
                      +.+.+.++++|++++++..++++++++++|+||||++.|+|+||||+++++++||.|+|+|++++.+||||+++++|++.
T Consensus        36 ~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~  115 (307)
T 1wwk_A           36 DRLVELVKDVEAIIVRSKPKVTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVA  115 (307)
T ss_dssp             HHHHHHSTTCSEEEESSCSCBCHHHHTTCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCEEEEEcCCCCCCHHHHhhCCCCeEEEECCccccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHH
Confidence            34455678999999876667999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC----CCcccccCHHH
Q 043239          120 RRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG----VSYPFYANVSG  195 (286)
Q Consensus       120 R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~----~~~~~~~~l~e  195 (286)
                      |+++.+++.+++|.|.+.  ...+.++.|++|||||+|.||+.+|++++++|++|++|+|+.++.    .+.. ..++++
T Consensus       116 R~~~~~~~~~~~g~w~~~--~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~e  192 (307)
T 1wwk_A          116 RKIAFADRKMREGVWAKK--EAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERAKEVNGK-FVDLET  192 (307)
T ss_dssp             TTHHHHHHHHTTTCCCTT--TCCBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCE-ECCHHH
T ss_pred             hCHHHHHHHHHcCCCCcc--CcCCcccCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCChhhHhhcCcc-ccCHHH
Confidence            999999999999999742  135789999999999999999999999999999999999987642    1232 358999


Q ss_pred             hhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCcccc
Q 043239          196 LAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHW  275 (286)
Q Consensus       196 ~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~  275 (286)
                      ++++||+|++|+|++++|+++++++.++.||+|++|||+|||+++|+++|+++|++|+|.||+||||+.||++.+++|+.
T Consensus       193 ll~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~  272 (307)
T 1wwk_A          193 LLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTK  272 (307)
T ss_dssp             HHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGG
T ss_pred             HHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988888886


Q ss_pred             cc--cccccccCC
Q 043239          276 IM--LCCLHMLLW  286 (286)
Q Consensus       276 ~~--~~tph~~~~  286 (286)
                      .+  ++|||++++
T Consensus       273 ~~nviltPh~~~~  285 (307)
T 1wwk_A          273 FDNVVLTPHIGAS  285 (307)
T ss_dssp             CTTEEECSSCTTC
T ss_pred             CCCEEECCccccC
Confidence            55  999999985

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=7.1e-56  Score=408.51  Aligned_cols=243  Identities=20%  Similarity=0.294  Sum_probs=217.9

Q ss_pred             HHhccCCceEEEEeCCCCCCHHHhccCCC--ccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHH
Q 043239           42 LSRHASSVRAILCLGPSPLTSDTLSLLPA--LEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVL  119 (286)
Q Consensus        42 ~~~~~~~~d~i~~~~~~~~~~~~l~~~~~--Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~  119 (286)
                      +.+.++++|++++++.+++++++++++|+  ||+|++.|+|+||||+++++++||.|+|+|++++.+||||++++||++.
T Consensus        38 ~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~  117 (333)
T 1dxy_A           38 TVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLL  117 (333)
T ss_dssp             GGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCeEEEEcCCCCCCHHHHHhCcccCceEEEEcCcccCccCHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHh
Confidence            44556899999997777899999999998  9999999999999999999999999999999999999999999999999


Q ss_pred             hcchHHHHHHHcCCCCC-CCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-CcccccCHHHhh
Q 043239          120 RRVSSIDRFVRNGLWPD-HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-SYPFYANVSGLA  197 (286)
Q Consensus       120 R~~~~~~~~~~~~~w~~-~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-~~~~~~~l~e~l  197 (286)
                      |+++.+++.+++|.|.. .  ...+.++.|++|||||+|.||+.+|++++++|++|++|+|+..+.. ......++++++
T Consensus       118 R~~~~~~~~~~~g~w~~~~--~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell  195 (333)
T 1dxy_A          118 RNMGKVQAQLQAGDYEKAG--TFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLF  195 (333)
T ss_dssp             TTHHHHHHHHHTTCHHHHT--CCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHH
T ss_pred             hhHHHHHHHHHcCCccccc--CCCccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchhhHhccccCCHHHHH
Confidence            99999999999999842 1  1257789999999999999999999999999999999999876532 112345899999


Q ss_pred             cCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCC--Cc------
Q 043239          198 ADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLM--CQ------  269 (286)
Q Consensus       198 ~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~--~~------  269 (286)
                      ++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||+.||.  +.      
T Consensus       196 ~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~  275 (333)
T 1dxy_A          196 KQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGS  275 (333)
T ss_dssp             HHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSS
T ss_pred             hcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCCCcccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999983  21      


Q ss_pred             -C----Ccccc--cccccccccCC
Q 043239          270 -R----SCLHW--IMLCCLHMLLW  286 (286)
Q Consensus       270 -~----~~l~~--~~~~tph~~~~  286 (286)
                       +    ++|+.  +.++|||+|++
T Consensus       276 ~~~~~~~pL~~~~nvi~TPHia~~  299 (333)
T 1dxy_A          276 FKDPLWDELLGMPNVVLSPHIAYY  299 (333)
T ss_dssp             CCCHHHHHHHTCTTEEECSSCTTC
T ss_pred             cCccchhHHhcCCCEEECCccccC
Confidence             1    34554  44999999986

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=3.4e-54  Score=398.81  Aligned_cols=267  Identities=25%  Similarity=0.371  Sum_probs=229.0

Q ss_pred             CchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEE
Q 043239           17 FNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILV   96 (286)
Q Consensus        17 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v   96 (286)
                      ..+.+...+++..+. .  .+.+++..+...++|+++++...++++++++++|+||+|++.++|+|+||+++++++||.|
T Consensus        35 ~~~~l~~~~~~~~~~-~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V  111 (347)
T 1mx3_A           35 EMPILKDVATVAFCD-A--QSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAV  111 (347)
T ss_dssp             THHHHTTTCEEEECC-C--SSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSSCCTTBCHHHHHHTTCEE
T ss_pred             hHHHhhccceEEecC-C--CCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhCCCCCEEEEcccccCcccHHHHHhCCceE
Confidence            356677767666554 2  2233333333357788888777789999999999999999999999999999999999999


Q ss_pred             EecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCC----CCC-cccCCCCEEEEEcCChHHHHHHHHhccCC
Q 043239           97 TNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGA----YPL-GSTLGGKRVGIVGLGSIGSEVAKRLVPFG  171 (286)
Q Consensus        97 ~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~----~~~-~~~l~g~~vgIiG~G~iG~~~A~~l~~~g  171 (286)
                      +|+|++++.+||||++++||++.|++..+++.+++|.|.....    ... +.++.|++|||||+|.||+.+|++++++|
T Consensus       112 ~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~g~tvGIIG~G~IG~~vA~~l~~~G  191 (347)
T 1mx3_A          112 CNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFG  191 (347)
T ss_dssp             ECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTT
T ss_pred             EECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccccccccCccCCCCCEEEEEeECHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999999999963210    011 26899999999999999999999999999


Q ss_pred             CEEEEECCCCCCCC----CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 043239          172 CSIAYTSRKKKPGV----SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVH  247 (286)
Q Consensus       172 ~~V~~~~r~~~~~~----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~  247 (286)
                      ++|++||++..+..    +.....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|++
T Consensus       192 ~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~  271 (347)
T 1mx3_A          192 FNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQ  271 (347)
T ss_dssp             CEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHH
T ss_pred             CEEEEECCCcchhhHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHH
Confidence            99999998765421    23334589999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCeeEEEeeccCCCCCC-cCCcccc--cccccccccCC
Q 043239          248 FLVRGSLVELVLMCLRTSLMC-QRSCLHW--IMLCCLHMLLW  286 (286)
Q Consensus       248 al~~~~i~ga~lDv~~~e~~~-~~~~l~~--~~~~tph~~~~  286 (286)
                      +|++|+|.||++|||+.||++ ..++|+.  +.++|||+|++
T Consensus       272 aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~~  313 (347)
T 1mx3_A          272 ALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWY  313 (347)
T ss_dssp             HHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTTC
T ss_pred             HHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHHH
Confidence            999999999999999999986 3566664  44999999985

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=2.1e-54  Score=395.70  Aligned_cols=241  Identities=19%  Similarity=0.301  Sum_probs=220.2

Q ss_pred             HHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHH
Q 043239           40 SFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVL  119 (286)
Q Consensus        40 ~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~  119 (286)
                      +.+.+.++++|++++++..++++++++++|+||||++.|+|+||||+++++++||.|+|+|++++.+||||++++||++.
T Consensus        38 ~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~  117 (313)
T 2ekl_A           38 EELLNIIGNYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAA  117 (313)
T ss_dssp             HHHHHHGGGCSEEEECSSSCBCHHHHHHCTTCCEEEECSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEEcCCCCCccCHHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHH
Confidence            34455668999999876678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC----CCcccccCHHH
Q 043239          120 RRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG----VSYPFYANVSG  195 (286)
Q Consensus       120 R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~----~~~~~~~~l~e  195 (286)
                      |+++.+++.+++|.|..    ..+.++.|++|||||+|.||+.+|++++++|++|++|+|+.++.    .+.. ..++++
T Consensus       118 R~~~~~~~~~~~g~w~~----~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~e  192 (313)
T 2ekl_A          118 RKMYTSMALAKSGIFKK----IEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINAK-AVSLEE  192 (313)
T ss_dssp             HTHHHHHHHHHTTCCCC----CCCCCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCE-ECCHHH
T ss_pred             hCHHHHHHHHHcCCCCC----CCCCCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhHHHhcCce-ecCHHH
Confidence            99999999999999962    35778999999999999999999999999999999999987642    1333 358999


Q ss_pred             hhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCC---c
Q 043239          196 LAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRS---C  272 (286)
Q Consensus       196 ~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~---~  272 (286)
                      ++++||+|++|+|.+++|+++++++.++.||+|+++||+|||+++|+++|.++|++|+|.||+||||+.||++ ++   +
T Consensus       193 ll~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~-~~~~~~  271 (313)
T 2ekl_A          193 LLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPK-EEWELE  271 (313)
T ss_dssp             HHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSCC-SHHHHH
T ss_pred             HHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCCCC-Ccccch
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988 44   6


Q ss_pred             ccccc--cccccccCC
Q 043239          273 LHWIM--LCCLHMLLW  286 (286)
Q Consensus       273 l~~~~--~~tph~~~~  286 (286)
                      |+..+  ++|||+|++
T Consensus       272 L~~~~nviltPH~~~~  287 (313)
T 2ekl_A          272 LLKHERVIVTTHIGAQ  287 (313)
T ss_dssp             HHHSTTEEECCSCTTC
T ss_pred             HhhCCCEEECCccCcC
Confidence            66544  999999985

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=4.9e-54  Score=400.11  Aligned_cols=242  Identities=21%  Similarity=0.264  Sum_probs=209.4

Q ss_pred             CchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEE
Q 043239           17 FNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILV   96 (286)
Q Consensus        17 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v   96 (286)
                      ..+.+.+..++..+. ..+. ..    +.++++|++++++.+++++++++ .++||||++.++|+||||+++++++||.|
T Consensus        15 ~~~~~~~~~~v~~~~-~~~~-~~----~~l~~ad~li~~~~~~v~~~ll~-~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v   87 (381)
T 3oet_A           15 ARELFSRLGEVKAVP-GRPI-PV----EELNHADALMVRSVTKVNESLLS-GTPINFVGTATAGTDHVDEAWLKQAGIGF   87 (381)
T ss_dssp             HHHHHTTSSEEEEEC-C----CH----HHHTTCSEEEECTTSCBSHHHHT-TSCCCEEEESSSCCTTBCHHHHHHTTCEE
T ss_pred             HHHHHhhCCcEEEeC-CCCC-CH----HHHCCCEEEEECCCCCCCHHHHc-CCCCEEEEEccccccccCHHHHHhCCEEE
Confidence            344555555555443 2111 12    23579999999887889999999 57799999999999999999999999999


Q ss_pred             EecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEE
Q 043239           97 TNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAY  176 (286)
Q Consensus        97 ~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~  176 (286)
                      +|+|++++.+||||+++++|++.|+.                    +.+++|++|||||+|.||+.+|++++++|++|++
T Consensus        88 ~n~pg~~~~~VAE~~l~~lL~l~r~~--------------------g~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~  147 (381)
T 3oet_A           88 SAAPGCNAIAVVEYVFSALLMLAERD--------------------GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLL  147 (381)
T ss_dssp             ECCTTTTHHHHHHHHHHHHHHHHHHT--------------------TCCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             EECCCcCcchhHHHHHHHHHHHHHhc--------------------CCccCCCEEEEEeECHHHHHHHHHHHHCCCEEEE
Confidence            99999999999999999999999872                    3468999999999999999999999999999999


Q ss_pred             ECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChh----hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          177 TSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEE----THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       177 ~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~----t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      ||++.........+.++++++++||+|++|+|++++    |+++++++.|+.||+|++|||+|||+++|+++|+++|++|
T Consensus       148 ~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g  227 (381)
T 3oet_A          148 CDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAG  227 (381)
T ss_dssp             ECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred             ECCChHHhccCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence            998654332333467999999999999999999999    9999999999999999999999999999999999999999


Q ss_pred             CeeEEEeeccCCCCCCcCCcccccc-cccccccCC
Q 043239          253 SLVELVLMCLRTSLMCQRSCLHWIM-LCCLHMLLW  286 (286)
Q Consensus       253 ~i~ga~lDv~~~e~~~~~~~l~~~~-~~tph~~~~  286 (286)
                      ++.||+||||+.||++.+. |+... ++|||||||
T Consensus       228 ~i~gA~LDV~e~EP~~~~~-L~~~~~i~TPHiag~  261 (381)
T 3oet_A          228 QPLSVVLDVWEGEPDLNVA-LLEAVDIGTSHIAGY  261 (381)
T ss_dssp             CCEEEEESCCTTTTSCCHH-HHHHSSEECSSCTTC
T ss_pred             CCeEEEeeccccCCCCcch-hhhCCEEECCccCcC
Confidence            9999999999999987665 44444 899999996

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=3.1e-53  Score=386.13  Aligned_cols=234  Identities=18%  Similarity=0.304  Sum_probs=213.5

Q ss_pred             ccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchH
Q 043239           45 HASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSS  124 (286)
Q Consensus        45 ~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~  124 (286)
                      .++++|+++++.   .+.++++++|+||||++.|+|+||||++++ ++||.|+|+|++++.+||||++++||++.|+++.
T Consensus        28 ~~~~~d~~i~~~---~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~-~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~  103 (303)
T 1qp8_A           28 DLGNVEAALVSR---ITAEELAKMPRLKFIQVVTAGLDHLPWESI-PPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQ  103 (303)
T ss_dssp             CCTTBCCCCBSC---CCHHHHHHCTTCCCEEBSSSCCTTSCCTTS-CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHH
T ss_pred             hhCCCEEEEECC---CCHHHHhhCCCCcEEEECCcCcccccHHHH-hcCCEEEECCCCCchHHHHHHHHHHHHHHhCHHH
Confidence            457899998854   467999999999999999999999999885 7999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEE
Q 043239          125 IDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLI  204 (286)
Q Consensus       125 ~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~  204 (286)
                      +++.+++|.|...   ....++.|++|||||+|.||+.+|++++++|++|++|+|+.+ ..+.....++++++++||+|+
T Consensus       104 ~~~~~~~g~w~~~---~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~-~~~~~~~~~l~ell~~aDvV~  179 (303)
T 1qp8_A          104 YGEKMKRGDYGRD---VEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK-EGPWRFTNSLEEALREARAAV  179 (303)
T ss_dssp             HHHHHHTTCCCCC---SCCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC-CSSSCCBSCSHHHHTTCSEEE
T ss_pred             HHHHHHcCCCCCC---CCCCCCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc-ccCcccCCCHHHHHhhCCEEE
Confidence            9999999999743   124589999999999999999999999999999999999876 223344568999999999999


Q ss_pred             EeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeecc-CCCCCCcCCcccccc--cccc
Q 043239          205 VCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCL-RTSLMCQRSCLHWIM--LCCL  281 (286)
Q Consensus       205 ~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~-~~e~~~~~~~l~~~~--~~tp  281 (286)
                      +|+|++++|+++++++.++.||+|++|||+|||+++|+++|+++|++|+|.||++||| +.||++.+++|+..+  ++||
T Consensus       180 l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~nviltP  259 (303)
T 1qp8_A          180 CALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATP  259 (303)
T ss_dssp             ECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECC
T ss_pred             EeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCCCChhhcCCCEEECC
Confidence            9999999999999999999999999999999999999999999999999999999999 889988888887655  9999


Q ss_pred             cccCC
Q 043239          282 HMLLW  286 (286)
Q Consensus       282 h~~~~  286 (286)
                      |+|++
T Consensus       260 H~~~~  264 (303)
T 1qp8_A          260 WVAGG  264 (303)
T ss_dssp             SCSSS
T ss_pred             CcCCC
Confidence            99984

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=100.00  E-value=6.5e-53  Score=381.11  Aligned_cols=227  Identities=21%  Similarity=0.284  Sum_probs=204.4

Q ss_pred             hccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcch
Q 043239           44 RHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVS  123 (286)
Q Consensus        44 ~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~  123 (286)
                      +.++++|+++++ ...+      ++|+||||++.|+|+|+||++++++++|.++|. +.++.+||||++++||++.|++.
T Consensus        30 ~~~~~ad~li~~-~~~~------~~~~Lk~I~~~~~G~d~id~~~~~~~~~~~~~~-~~~~~~vAE~~~~~~L~~~R~~~  101 (290)
T 3gvx_A           30 PDYYDAEAQVIK-DRYV------LGKRTKMIQAISAGVDHIDVNGIPENVVLCSNA-GAYSISVAEHAFALLLAHAKNIL  101 (290)
T ss_dssp             TSCCCCSEEEES-SCCC------CCSSCCEEEECSSCCTTSCGGGSCTTSEEECCH-HHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             cchhhhhhhhhh-hhhh------hhhhhHHHHHHhcCCceeecCCCccceEEeecC-CcceeeHHHHHHHHHHHHHHhhh
Confidence            345799999983 3332      789999999999999999999999877766664 77899999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEE
Q 043239          124 SIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVL  203 (286)
Q Consensus       124 ~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV  203 (286)
                      .+++.+++|.|.+.    ..+++.|++|||||+|.||+++|++++++|++|++|+|+.++........++++++++||+|
T Consensus       102 ~~~~~~~~g~w~~~----~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~l~ell~~aDiV  177 (290)
T 3gvx_A          102 ENNELMKAGIFRQS----PTTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNVDVISESPADLFRQSDFV  177 (290)
T ss_dssp             HHHHHHHTTCCCCC----CCCCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTCSEECSSHHHHHHHCSEE
T ss_pred             hhhhHhhhcccccC----CceeeecchheeeccCchhHHHHHHHHhhCcEEEEEeccccccccccccCChHHHhhccCeE
Confidence            99999999999854    23689999999999999999999999999999999999887665555556999999999999


Q ss_pred             EEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCcccccc--cccc
Q 043239          204 IVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWIM--LCCL  281 (286)
Q Consensus       204 ~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~~--~~tp  281 (286)
                      ++|+|++++|+++++++.++.||+|++|||+|||+++|+++|+++|++|++.||+||||+.||+   ++|+..+  ++||
T Consensus       178 ~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~---~pL~~~~nvilTP  254 (290)
T 3gvx_A          178 LIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPE---ITETNLRNAILSP  254 (290)
T ss_dssp             EECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTS---CCSCCCSSEEECC
T ss_pred             EEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcc---cchhhhhhhhcCc
Confidence            9999999999999999999999999999999999999999999999999999999999999998   5555544  9999


Q ss_pred             cccC
Q 043239          282 HMLL  285 (286)
Q Consensus       282 h~~~  285 (286)
                      |+||
T Consensus       255 Hiag  258 (290)
T 3gvx_A          255 HVAG  258 (290)
T ss_dssp             SCSS
T ss_pred             cccC
Confidence            9993

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=5.3e-52  Score=382.43  Aligned_cols=270  Identities=25%  Similarity=0.378  Sum_probs=232.8

Q ss_pred             CCCchhhhCC--CcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccC-CCccEEEEcCCCCCcCChhHHhh
Q 043239           15 GCFNPPLSER--FTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLL-PALEIVVGSTAGIDHVDLQECRR   91 (286)
Q Consensus        15 ~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~-~~Lk~i~~~~~G~d~id~~~~~~   91 (286)
                      +...+.+.+.  +++..+......+ .+.+.+.++++|++++++..++++++++++ |+||||++.++|+||||++++++
T Consensus        19 ~~~~~~l~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~Lk~I~~~~~G~d~id~~~~~~   97 (330)
T 2gcg_A           19 AEGRVALARAADCEVEQWDSDEPIP-AKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKK   97 (330)
T ss_dssp             HHHHHHHHHCTTEEEEECCSSSCCC-HHHHHHHHTTCSEEEECTTSCBCHHHHHHHCTTCCEEEESSSCCTTBCHHHHHH
T ss_pred             HHHHHHHHhcCCceEEEecCCCCCC-HHHHHHHhcCCeEEEECCCCCCCHHHHHhcCCCceEEEECCcccccccHHHHHh
Confidence            3345566665  5654433111222 344455668999999877778999999999 99999999999999999999999


Q ss_pred             cCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCC-CCCCcccCCCCEEEEEcCChHHHHHHHHhccC
Q 043239           92 RGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHG-AYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPF  170 (286)
Q Consensus        92 ~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~-~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~  170 (286)
                      +||.|+|+|++++.+||||+++++|++.|++..+++.+++|.|.... ....+.++.|++|||||+|.||+.+|++++++
T Consensus        98 ~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~  177 (330)
T 2gcg_A           98 RGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPF  177 (330)
T ss_dssp             TTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEEEECCSHHHHHHHHHHGGG
T ss_pred             CCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEEEECcCHHHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999999997421 12347899999999999999999999999999


Q ss_pred             CCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHH
Q 043239          171 GCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKEL  245 (286)
Q Consensus       171 g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al  245 (286)
                      |++|++|+++.....     +.. ..++++++++||+|++|+|.+++++++++++.++.||+|++|||+|||+++|+++|
T Consensus       178 G~~V~~~d~~~~~~~~~~~~g~~-~~~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL  256 (330)
T 2gcg_A          178 GVQRFLYTGRQPRPEEAAEFQAE-FVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDL  256 (330)
T ss_dssp             TCCEEEEESSSCCHHHHHTTTCE-ECCHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHH
T ss_pred             CCEEEEECCCCcchhHHHhcCce-eCCHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHH
Confidence            999999998765321     222 23899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCeeEEEeeccCCCCCCcCCcccccc--cccccccCC
Q 043239          246 VHFLVRGSLVELVLMCLRTSLMCQRSCLHWIM--LCCLHMLLW  286 (286)
Q Consensus       246 ~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~~--~~tph~~~~  286 (286)
                      .++|+++++.|+++|||++||++.+++|+...  ++|||+|++
T Consensus       257 ~~aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nvi~tPh~~~~  299 (330)
T 2gcg_A          257 YQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSA  299 (330)
T ss_dssp             HHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECCSCTTC
T ss_pred             HHHHHcCCccEEEeCCCCCCCCCCCChhhcCCCEEECCCCCCC
Confidence            99999999999999999999998888887655  999999985

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=3.4e-52  Score=384.28  Aligned_cols=269  Identities=28%  Similarity=0.418  Sum_probs=231.9

Q ss_pred             CCCchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCe
Q 043239           15 GCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGI   94 (286)
Q Consensus        15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI   94 (286)
                      +...+.+.+.+++..+....+. ..+.+.+.++++|+++++...++++++++++|+||||++.|+|+||||+++++++||
T Consensus        13 ~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi   91 (334)
T 2dbq_A           13 EVGIKMLEDEFEVEVWGDEKEI-PREILLKKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGI   91 (334)
T ss_dssp             HHHHHHHHTTSEEEECCCSSCC-CHHHHHHHTTSCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCCTTBCHHHHHHTTC
T ss_pred             HHHHHHHHhcCCEEEecCCCCC-CHHHHHHHhcCcEEEEEcCCCCCCHHHHhhCCCceEEEECCcccccccHHHHHhCCC
Confidence            3345667777776544311112 234455567899999997777899999999999999999999999999999999999


Q ss_pred             EEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCC----CCC-CCCCcccCCCCEEEEEcCChHHHHHHHHhcc
Q 043239           95 LVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWP----DHG-AYPLGSTLGGKRVGIVGLGSIGSEVAKRLVP  169 (286)
Q Consensus        95 ~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~----~~~-~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~  169 (286)
                      .|+|+|++++.+||||++++||++.|+++.+++.+++|.|.    ... ....+.++.|++|||||+|.||+.+|+++++
T Consensus        92 ~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~  171 (334)
T 2dbq_A           92 YVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKG  171 (334)
T ss_dssp             EEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEEECCSHHHHHHHHHHHH
T ss_pred             EEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEEEccCHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999995    211 1124678999999999999999999999999


Q ss_pred             CCCEEEEECCCCCCCC----CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHH
Q 043239          170 FGCSIAYTSRKKKPGV----SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKEL  245 (286)
Q Consensus       170 ~g~~V~~~~r~~~~~~----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al  245 (286)
                      +|++|++|+|+.+...    +. ...++++++++||+|++|+|.+++++++++++.++.||+|++|||+|||.++|+++|
T Consensus       172 ~G~~V~~~d~~~~~~~~~~~g~-~~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL  250 (334)
T 2dbq_A          172 FNMRILYYSRTRKEEVERELNA-EFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNAL  250 (334)
T ss_dssp             TTCEEEEECSSCCHHHHHHHCC-EECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHH
T ss_pred             CCCEEEEECCCcchhhHhhcCc-ccCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHH
Confidence            9999999999876511    22 245899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCeeEEEeeccCCCCCCcCCcccccc--cccccccCC
Q 043239          246 VHFLVRGSLVELVLMCLRTSLMCQRSCLHWIM--LCCLHMLLW  286 (286)
Q Consensus       246 ~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~~--~~tph~~~~  286 (286)
                      .++|++|+|.||++|||+.|| +.+++|+..+  ++|||+|++
T Consensus       251 ~~aL~~~~i~ga~lDv~~~EP-~~~~~L~~~~~vi~tPh~~~~  292 (334)
T 2dbq_A          251 VKALKEGWIAGAGLDVFEEEP-YYNEELFKLDNVVLTPHIGSA  292 (334)
T ss_dssp             HHHHHHTSSSEEEESCCSSSS-CCCHHHHHCTTEEECSSCTTC
T ss_pred             HHHHHhCCeeEEEecCCCCCC-CCCchhhcCCCEEECCccCCC
Confidence            999999999999999999998 6666676655  999999985

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=4e-52  Score=383.60  Aligned_cols=267  Identities=29%  Similarity=0.480  Sum_probs=230.4

Q ss_pred             CCCCCchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhc
Q 043239           13 APGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRR   92 (286)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~   92 (286)
                      +++...+.+.+.+++..+.   .. ..+.+.+.++++|++++++..++++++++++|+||+|++.++|+|+||+++++++
T Consensus        11 ~~~~~~~~l~~~~~~~~~~---~~-~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~   86 (333)
T 2d0i_A           11 MKREALEELKKYADVEIIL---YP-SGEELKGVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKR   86 (333)
T ss_dssp             CCHHHHHHHHTTSEEEECC---SC-CHHHHHHHGGGCSEEEECTTSCBCHHHHTTCTTCCEEEESSSCCTTBCHHHHHHT
T ss_pred             CCHHHHHHHHhcCCEEEeC---CC-CHHHHHHHhcCCEEEEECCCCCCCHHHHhhCCCceEEEECCcccccccHHHHHhC
Confidence            3444566777777654432   12 2334455668999999877778999999999999999999999999999999999


Q ss_pred             CeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCc----ccCCCCEEEEEcCChHHHHHHHHhc
Q 043239           93 GILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLG----STLGGKRVGIVGLGSIGSEVAKRLV  168 (286)
Q Consensus        93 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~----~~l~g~~vgIiG~G~iG~~~A~~l~  168 (286)
                      ||.|+|+|++++.+||||++++||++.|++..+++.+++|.|........+    .++.|++|||||+|.||+.+|++++
T Consensus        87 gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~l~g~~vgIIG~G~iG~~vA~~l~  166 (333)
T 2d0i_A           87 GIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLI  166 (333)
T ss_dssp             TCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHHHHHTTSCCCCCSTTCEEEEECCSHHHHHHHHHHG
T ss_pred             CcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcccccCCcccCCCCcCEEEEEccCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999631001134    7899999999999999999999999


Q ss_pred             cCCCEEEEECCCCCCCC----CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHH
Q 043239          169 PFGCSIAYTSRKKKPGV----SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKE  244 (286)
Q Consensus       169 ~~g~~V~~~~r~~~~~~----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~a  244 (286)
                      ++|++|++|+|+.+...    +.. ..++++++++||+|++|+|.+++++++++++.++.||+| +|||+|||.++|+++
T Consensus       167 ~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~vd~~a  244 (333)
T 2d0i_A          167 PFGVKLYYWSRHRKVNVEKELKAR-YMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKA  244 (333)
T ss_dssp             GGTCEEEEECSSCCHHHHHHHTEE-ECCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGGBCHHH
T ss_pred             HCCCEEEEECCCcchhhhhhcCce-ecCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcccCHHH
Confidence            99999999999876421    222 348999999999999999999999999999899999999 999999999999999


Q ss_pred             HHHHHHhCCeeEEEeeccCCCCCCcCCccccc---ccccccccCC
Q 043239          245 LVHFLVRGSLVELVLMCLRTSLMCQRSCLHWI---MLCCLHMLLW  286 (286)
Q Consensus       245 l~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~---~~~tph~~~~  286 (286)
                      |+++|++++|.||++|||+.||++ +++|+..   .++|||+|++
T Consensus       245 L~~aL~~~~i~gaglDv~~~EP~~-~~~L~~~~~nviltPh~~~~  288 (333)
T 2d0i_A          245 VTEAIKQGKLKGYATDVFEKEPVR-EHELFKYEWETVLTPHYAGL  288 (333)
T ss_dssp             HHHHHHTTCBCEEEESCCSSSSCS-CCGGGGCTTTEEECCSCTTC
T ss_pred             HHHHHHcCCceEEEecCCCCCCCC-CchHHcCCCCEEEcCccCCC
Confidence            999999999999999999999987 6777654   4999999985

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=3.7e-51  Score=379.21  Aligned_cols=265  Identities=23%  Similarity=0.314  Sum_probs=225.4

Q ss_pred             CchhhhCCCcEEecCCCCCCCchHHHHhccC-----CceEEEEe------CCCCCCHHHhccCC-CccEEEEcCCCCCcC
Q 043239           17 FNPPLSERFTLLDPLLHSADSTHSFLSRHAS-----SVRAILCL------GPSPLTSDTLSLLP-ALEIVVGSTAGIDHV   84 (286)
Q Consensus        17 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~i~~~------~~~~~~~~~l~~~~-~Lk~i~~~~~G~d~i   84 (286)
                      ..+.|.+.+++..+. .  .+.+++.+ .++     ++|++++.      ...++++++++++| +||+|++.++|+|||
T Consensus        19 ~~~~l~~~~~~~~~~-~--~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~Lk~I~~~~~G~d~i   94 (348)
T 2w2k_A           19 LWSDFQQKFEVIPAN-L--TTHDGFKQ-ALREKRYGDFEAIIKLAVENGTESYPWNADLISHLPSSLKVFAAAGAGFDWL   94 (348)
T ss_dssp             HHHHHHHHSEEEECC-C--CCHHHHHH-HHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTTSCTTCCEEEESSSCCTTB
T ss_pred             HHHHHHhcceEEecC-C--CCHHHHHH-HhhhcccCCeEEEEEcccccccccCCCCHHHHHhcccCceEEEECCcccccc
Confidence            355666677775543 2  22344443 334     88998864      23579999999998 699999999999999


Q ss_pred             ChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCC---CCCCC--CCCCcccCCCCEEEEEcCChH
Q 043239           85 DLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGL---WPDHG--AYPLGSTLGGKRVGIVGLGSI  159 (286)
Q Consensus        85 d~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~---w~~~~--~~~~~~~l~g~~vgIiG~G~i  159 (286)
                      |+++|+++||.|+|+|++++.+||||++++||++.|+++.+++.+++|.   |....  ....+.++.|++|||||+|.|
T Consensus        95 d~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~~~~~~l~g~~vgIIG~G~I  174 (348)
T 2w2k_A           95 DLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAI  174 (348)
T ss_dssp             CHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHHTTCCCSTTCEEEEECCSHH
T ss_pred             CHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccccccccccCcCCCCCEEEEEEECHH
Confidence            9999999999999999999999999999999999999999999999999   93210  012467899999999999999


Q ss_pred             HHHHHHHhc-cCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEE
Q 043239          160 GSEVAKRLV-PFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIIN  233 (286)
Q Consensus       160 G~~~A~~l~-~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn  233 (286)
                      |+.+|++++ ++|++|++|||+.....     +.....++++++++||+|++|+|.+++++++++++.++.||+|++|||
T Consensus       175 G~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin  254 (348)
T 2w2k_A          175 QKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVN  254 (348)
T ss_dssp             HHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEE
T ss_pred             HHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEE
Confidence            999999999 99999999999875421     333335899999999999999999999999999999999999999999


Q ss_pred             cCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCcccccc--cccccccCC
Q 043239          234 VGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWIM--LCCLHMLLW  286 (286)
Q Consensus       234 ~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~~--~~tph~~~~  286 (286)
                      +|||+++|+++|.++|++|+|.||++|||+.|| ..+.+|+..+  ++|||+|++
T Consensus       255 ~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP-~~~~~L~~~~nviltPH~~~~  308 (348)
T 2w2k_A          255 TARGPVISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELIEMKHVTLTTHIGGV  308 (348)
T ss_dssp             CSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTT-SCCHHHHTSSSEEECCSCTTC
T ss_pred             CCCCchhCHHHHHHHHHhCCceEEEeccCCCCC-CCCchhhcCCCEEEcCcCCCC
Confidence            999999999999999999999999999999998 4455565544  999999985

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=1.6e-50  Score=393.79  Aligned_cols=265  Identities=25%  Similarity=0.346  Sum_probs=231.0

Q ss_pred             CCCCchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcC
Q 043239           14 PGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRG   93 (286)
Q Consensus        14 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~g   93 (286)
                      ++...+.|.+.+++....   ..+ .+.+.+.+.++|++++++.+++++++++++|+||||++.|+|+||||+++|+++|
T Consensus        14 ~~~~~~~l~~~~~v~~~~---~~~-~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~g   89 (529)
T 1ygy_A           14 APSTVAALGDQVEVRWVD---GPD-RDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARG   89 (529)
T ss_dssp             CGGGGTTSCSSSEEEECC---TTS-HHHHHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSSCCTTBCHHHHHHTT
T ss_pred             CHHHHHHHhcCceEEEcC---CCC-HHHHHHHhcCCEEEEEcCCCCCCHHHHhhCCCCcEEEECCcCcCccCHhHHHhCC
Confidence            344455566666654433   122 3344556789999999877889999999999999999999999999999999999


Q ss_pred             eEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCE
Q 043239           94 ILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS  173 (286)
Q Consensus        94 I~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~  173 (286)
                      |.|+|+|++++.+||||++++||++.|+++++++.+++|.|.+.  ...+.+++|++|||||+|.||+++|++|+++|++
T Consensus        90 i~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~--~~~~~~l~g~~vgIIG~G~IG~~vA~~l~~~G~~  167 (529)
T 1ygy_A           90 VLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRS--SFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAY  167 (529)
T ss_dssp             CEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGG--GCCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCE
T ss_pred             eEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCccc--CcCccccCCCEEEEEeeCHHHHHHHHHHHhCCCE
Confidence            99999999999999999999999999999999999999999753  2357899999999999999999999999999999


Q ss_pred             EEEECCCCCCCC----CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 043239          174 IAYTSRKKKPGV----SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFL  249 (286)
Q Consensus       174 V~~~~r~~~~~~----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al  249 (286)
                      |++||++.....    +.. ..++++++++||+|++|+|.++++.++++++.++.||+|+++||+|||+++|+.+|+++|
T Consensus       168 V~~~d~~~~~~~a~~~g~~-~~~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al  246 (529)
T 1ygy_A          168 VVAYDPYVSPARAAQLGIE-LLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAI  246 (529)
T ss_dssp             EEEECTTSCHHHHHHHTCE-ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHH
T ss_pred             EEEECCCCChhHHHhcCcE-EcCHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHH
Confidence            999999764211    333 248999999999999999999999999999899999999999999999999999999999


Q ss_pred             HhCCeeEEEeeccCCCCCCcCCcccccc--cccccccCC
Q 043239          250 VRGSLVELVLMCLRTSLMCQRSCLHWIM--LCCLHMLLW  286 (286)
Q Consensus       250 ~~~~i~ga~lDv~~~e~~~~~~~l~~~~--~~tph~~~~  286 (286)
                      ++|++.||++|||+.||++ +++|+...  ++|||++++
T Consensus       247 ~~g~i~ga~lDv~~~eP~~-~~~L~~~~~vilTPh~~~~  284 (529)
T 1ygy_A          247 TGGHVRAAGLDVFATEPCT-DSPLFELAQVVVTPHLGAS  284 (529)
T ss_dssp             HTSSEEEEEESSCSSSSCS-CCGGGGCTTEEECSSCSSC
T ss_pred             HcCCccEEEEeeccCCCCC-CchHHhCCCEEEccccCCC
Confidence            9999999999999999974 66677655  999999964

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.1e-51  Score=385.14  Aligned_cols=220  Identities=21%  Similarity=0.347  Sum_probs=200.3

Q ss_pred             cCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHH
Q 043239           46 ASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSI  125 (286)
Q Consensus        46 ~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~  125 (286)
                      ++++|++++++.+++++++++ +|+||||++.++|+||||+++++++||.|+|+|++++.+||||+++++|++.|+.   
T Consensus        35 l~~ad~li~~~~~~~~~~~l~-~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~---  110 (380)
T 2o4c_A           35 LAEVDVLLVRSVTEVSRAALA-GSPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVR---  110 (380)
T ss_dssp             TTTCSEEEECTTSCBCHHHHT-TSCCCEEEECSSCSTTBCHHHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHHH---
T ss_pred             HCCcEEEEEcCCCCCCHHHhc-CCCceEEEEcCcccchhhHHHHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhhh---
Confidence            479999999877889999999 8999999999999999999999999999999999999999999999999999872   


Q ss_pred             HHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEE
Q 043239          126 DRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIV  205 (286)
Q Consensus       126 ~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~  205 (286)
                                       +.++.|++|||||+|+||+.+|++|+++|++|++||++...........++++++++||+|++
T Consensus       111 -----------------~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~g~~~~~l~ell~~aDvV~l  173 (380)
T 2o4c_A          111 -----------------GADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAREPDGEFVSLERLLAEADVISL  173 (380)
T ss_dssp             -----------------TCCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHHSTTSCCCCHHHHHHHCSEEEE
T ss_pred             -----------------hcccCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhhccCcccCCHHHHHHhCCEEEE
Confidence                             236899999999999999999999999999999999865432111235789999999999999


Q ss_pred             eccCChh----hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCcccccccccc
Q 043239          206 CCALTEE----THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWIMLCCL  281 (286)
Q Consensus       206 ~lp~~~~----t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~~~~tp  281 (286)
                      |+|++++    |+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|.+|+||||+.||.+.+..+..+.++||
T Consensus       174 ~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~~~~~l~~~nvi~TP  253 (380)
T 2o4c_A          174 HTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPELAARCLIATP  253 (380)
T ss_dssp             CCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHTTCSEECS
T ss_pred             eccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccCCCCchhhccCCEEEcc
Confidence            9999999    999999999999999999999999999999999999999999999999999999766655554559999


Q ss_pred             cccCC
Q 043239          282 HMLLW  286 (286)
Q Consensus       282 h~~~~  286 (286)
                      |||||
T Consensus       254 Hiag~  258 (380)
T 2o4c_A          254 HIAGY  258 (380)
T ss_dssp             SCTTC
T ss_pred             ccCcC
Confidence            99986

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=99.96  E-value=5.1e-31  Score=251.61  Aligned_cols=192  Identities=15%  Similarity=0.161  Sum_probs=164.8

Q ss_pred             CCCccEEE-EcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccC
Q 043239           68 LPALEIVV-GSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTL  146 (286)
Q Consensus        68 ~~~Lk~i~-~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l  146 (286)
                      +|+++.|+ .+++|+|++  ++++++||.++|+++++. +|||       +++|++..+...++.| |.+    ..+.++
T Consensus       191 ~~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~l~~g-w~r----~~~~~l  255 (479)
T 1v8b_A          191 AKKIIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHSLPDG-LMR----ATDFLI  255 (479)
T ss_dssp             HTTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHHHHHH-HHH----HHCCCC
T ss_pred             hcCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHHHhhh-hhh----cccccc
Confidence            47899998 889999998  889999999999999999 9999       3467887777777777 853    245679


Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-----CCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      .|++|||||+|.||+.+|++++++|++|++++++....     .++ ...++++++++||+|++|+    .+.++|+++.
T Consensus       256 ~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~-~~~~l~ell~~aDiVi~~~----~t~~lI~~~~  330 (479)
T 1v8b_A          256 SGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGF-NVVTLDEIVDKGDFFITCT----GNVDVIKLEH  330 (479)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTC-EECCHHHHTTTCSEEEECC----SSSSSBCHHH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCC-EecCHHHHHhcCCEEEECC----ChhhhcCHHH
Confidence            99999999999999999999999999999999987542     233 3568999999999999995    5789999999


Q ss_pred             HhcCCCCcEEEEcCCCcc-cCHHHHHH--HHHhCCeeEEEeeccCCCCCCcCCccccc----cccccccc
Q 043239          222 MTALGKEGVIINVGRGAL-IDEKELVH--FLVRGSLVELVLMCLRTSLMCQRSCLHWI----MLCCLHML  284 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~-vd~~al~~--al~~~~i~ga~lDv~~~e~~~~~~~l~~~----~~~tph~~  284 (286)
                      |+.||+|++|||+|||++ ||+++|.+  +|++|+|+ +++|||+.   +..++++..    .++| |+|
T Consensus       331 l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~pl---p~~~~l~~l~~~nvv~t-H~a  395 (479)
T 1v8b_A          331 LLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRITL---PNGNKIIVLARGRLLNL-GCA  395 (479)
T ss_dssp             HTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEEEC---TTSCEEEEEGGGSBHHH-HSS
T ss_pred             HhhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEEEC---CCCCeeeEecCCCEEEE-ecc
Confidence            999999999999999999 99999999  99999998 89999843   334555544    4888 998

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=99.96  E-value=5.7e-31  Score=252.12  Aligned_cols=190  Identities=16%  Similarity=0.190  Sum_probs=158.9

Q ss_pred             CCccEEE-EcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCC
Q 043239           69 PALEIVV-GSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLG  147 (286)
Q Consensus        69 ~~Lk~i~-~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~  147 (286)
                      |+++.|+ .+++|+|++  ++++++||.++|+++++. +|||+.       +|++......+..| |.+    ..+.++.
T Consensus       212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~l-------~r~~~~~~~~l~~g-w~~----~~g~~L~  276 (494)
T 3d64_A          212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKSK-------FDNLYGCRESLVDG-IKR----ATDVMIA  276 (494)
T ss_dssp             TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHH-------HHHHHHHHTTHHHH-HHH----HHCCCCT
T ss_pred             hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHHH-------HhhhHhhhhhhhhh-hhh----ccccccC
Confidence            7999998 889999998  789999999999999999 999954       46665554445555 643    2456899


Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-----CCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM  222 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l  222 (286)
                      |++|||||+|.||+.+|++++++|++|++++++..+.     .++ ...++++++++||+|++|+    .++++|+++.|
T Consensus       277 GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~-~~~~l~ell~~aDiVi~~~----~t~~lI~~~~l  351 (494)
T 3d64_A          277 GKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGY-RVVTMEYAADKADIFVTAT----GNYHVINHDHM  351 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTC-EECCHHHHTTTCSEEEECS----SSSCSBCHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCC-EeCCHHHHHhcCCEEEECC----CcccccCHHHH
Confidence            9999999999999999999999999999999987542     133 3468999999999999997    47899999999


Q ss_pred             hcCCCCcEEEEcCCCcc-cCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCccccc----cccccccc
Q 043239          223 TALGKEGVIINVGRGAL-IDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWI----MLCCLHML  284 (286)
Q Consensus       223 ~~mk~g~ilvn~srg~~-vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~----~~~tph~~  284 (286)
                      +.||+|++|||+|||++ ||+++| ++|++|+|+ +++|+   +|++..++++..    .++| |+|
T Consensus       352 ~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~-~~~Dv---~plp~~~pL~~l~~~nvv~t-H~a  412 (494)
T 3d64_A          352 KAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK-PQVDH---IIFPDGKRVILLAEGRLVNL-GCA  412 (494)
T ss_dssp             HHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-TTEEE---EECTTSCEEEEEGGGSBHHH-HTS
T ss_pred             hhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc-eeEEE---EECCCCCchhhcCCCCEEEE-eCc
Confidence            99999999999999999 699999 999999997 44554   466666666654    4889 998

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.94  E-value=8.3e-28  Score=217.47  Aligned_cols=186  Identities=18%  Similarity=0.220  Sum_probs=150.9

Q ss_pred             HHhccCCceEEEEe----------------CCCCCCHHHhccCCCccEEEEcCCCCCcCCh-hHHhhcCeEEEecC----
Q 043239           42 LSRHASSVRAILCL----------------GPSPLTSDTLSLLPALEIVVGSTAGIDHVDL-QECRRRGILVTNAG----  100 (286)
Q Consensus        42 ~~~~~~~~d~i~~~----------------~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~-~~~~~~gI~v~n~~----  100 (286)
                      +.+.++++|+++++                ...++++++++.+|+||+|+   +|+|++|+ ++++++||.|+|++    
T Consensus        52 ~~~~~~~~d~ii~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~l~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~  128 (293)
T 3d4o_A           52 DEVDWNTVDAILLPISGTNEAGKVDTIFSNESIVLTEEMIEKTPNHCVVY---SGISNTYLNQCMKKTNRTLVKLMERDD  128 (293)
T ss_dssp             GGCCGGGCSEEECCTTCCCTTCBCCBSSCSCCCBCCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHH
T ss_pred             hHHHHhcCCEEEeccccccCCceeecccccCCccchHHHHHhCCCCCEEE---ecCCCHHHHHHHHHcCCeEEEecCCce
Confidence            44556789999985                23468999999999999997   89999998 89999999999998    


Q ss_pred             --CCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEEC
Q 043239          101 --NAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTS  178 (286)
Q Consensus       101 --~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~  178 (286)
                        ++++.+|||++++++|..                       .+.++.|++|||||+|.||+.+|++++++|++|++++
T Consensus       129 ~~~~~~~svae~a~~~~l~~-----------------------~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d  185 (293)
T 3d4o_A          129 IAIYNSIPTAEGTIMMAIQH-----------------------TDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGA  185 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-----------------------CSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             eeeeccHhHHHHHHHHHHHh-----------------------cCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEE
Confidence              789999999999998862                       1346899999999999999999999999999999999


Q ss_pred             CCCCCCC-----Cccc--ccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHH
Q 043239          179 RKKKPGV-----SYPF--YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGAL-IDEKELVHFLV  250 (286)
Q Consensus       179 r~~~~~~-----~~~~--~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~-vd~~al~~al~  250 (286)
                      |+.++..     +...  ..+++++++++|+|++|+|.     ++++++.++.||+++++||++||.. ++.    +..+
T Consensus       186 r~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----~~i~~~~l~~mk~~~~lin~ar~~~~~~~----~~a~  256 (293)
T 3d4o_A          186 RESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPA-----LVVTANVLAEMPSHTFVIDLASKPGGTDF----RYAE  256 (293)
T ss_dssp             SSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSS-----CCBCHHHHHHSCTTCEEEECSSTTCSBCH----HHHH
T ss_pred             CCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCCh-----HHhCHHHHHhcCCCCEEEEecCCCCCCCH----HHHH
Confidence            9865421     2221  25788999999999999985     6888899999999999999999754 333    3333


Q ss_pred             hCCeeEEEeecc
Q 043239          251 RGSLVELVLMCL  262 (286)
Q Consensus       251 ~~~i~ga~lDv~  262 (286)
                      ..++.....|-+
T Consensus       257 ~~Gv~~~~~~~l  268 (293)
T 3d4o_A          257 KRGIKALLVPGL  268 (293)
T ss_dssp             HHTCEEEECCCH
T ss_pred             HCCCEEEECCCC
Confidence            334544444444

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.90  E-value=2.9e-24  Score=194.73  Aligned_cols=173  Identities=15%  Similarity=0.205  Sum_probs=136.8

Q ss_pred             HHhccCCceEEEEe----C----------CCC--CCHHHhccCCCccEEEEcCCCCCcCC-hhHHhhcCeEEEecCCCCC
Q 043239           42 LSRHASSVRAILCL----G----------PSP--LTSDTLSLLPALEIVVGSTAGIDHVD-LQECRRRGILVTNAGNAFS  104 (286)
Q Consensus        42 ~~~~~~~~d~i~~~----~----------~~~--~~~~~l~~~~~Lk~i~~~~~G~d~id-~~~~~~~gI~v~n~~~~~~  104 (286)
                      +.+.++++|+++++    .          ..+  +++++++.+|++|+|+   +|+|++| +++++++||.|+|+|+++ 
T Consensus        54 ~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~~~~~~~~~~l~~~~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~~-  129 (300)
T 2rir_A           54 DEIPFQQIDSIILPVSATTGEGVVSTVFSNEEVVLKQDHLDRTPAHCVIF---SGISNAYLENIAAQAKRKLVKLFERD-  129 (300)
T ss_dssp             GGSCGGGCSEEECCSSCEETTTEECBSSCSSCEECCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHTTCCEEEGGGSH-
T ss_pred             hHHHHhcCCEEEeccccccCCcccccccccCCccchHHHHhhcCCCCEEE---EecCCHHHHHHHHHCCCEEEeecCCC-
Confidence            34556789999872    1          345  7899999999999998   8999999 899999999999999864 


Q ss_pred             cChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC
Q 043239          105 EDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG  184 (286)
Q Consensus       105 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~  184 (286)
                       ++         ++.|+++.+     +|.|... ....+.++.|+++||||+|.||+.+|++++++|++|++++|+.++.
T Consensus       130 -~v---------~~~r~~~~~-----~g~~~~~-~~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~  193 (300)
T 2rir_A          130 -DI---------AIYNSIPTV-----EGTIMLA-IQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHL  193 (300)
T ss_dssp             -HH---------HHHHHHHHH-----HHHHHHH-HHTCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHH
T ss_pred             -ce---------EEEcCccHH-----HHHHHHH-HHhcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence             22         334555444     2334210 0014568999999999999999999999999999999999986532


Q ss_pred             C-----Ccc--cccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 043239          185 V-----SYP--FYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGAL  239 (286)
Q Consensus       185 ~-----~~~--~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~  239 (286)
                      .     +..  ...++++++++||+|++|+|.     ++++++.++.||+|+++||++||..
T Consensus       194 ~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----~~i~~~~~~~mk~g~~lin~a~g~~  250 (300)
T 2rir_A          194 ARITEMGLVPFHTDELKEHVKDIDICINTIPS-----MILNQTVLSSMTPKTLILDLASRPG  250 (300)
T ss_dssp             HHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS-----CCBCHHHHTTSCTTCEEEECSSTTC
T ss_pred             HHHHHCCCeEEchhhHHHHhhCCCEEEECCCh-----hhhCHHHHHhCCCCCEEEEEeCCCC
Confidence            1     222  135789999999999999996     5888899999999999999999854

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.84  E-value=1.4e-22  Score=194.46  Aligned_cols=196  Identities=16%  Similarity=0.155  Sum_probs=147.3

Q ss_pred             CCccEE-EEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCC
Q 043239           69 PALEIV-VGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLG  147 (286)
Q Consensus        69 ~~Lk~i-~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~  147 (286)
                      ++++-+ -.+++|+|++  .++.++||.++|+++++. +|||+.+       |++.........+ |.+.    .+..+.
T Consensus       209 ~~i~GvveetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~~~-------r~l~~~~~s~~~g-~~r~----~~~~l~  273 (494)
T 3ce6_A          209 ESVKGVTEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKSKF-------DNKYGTRHSLIDG-INRG----TDALIG  273 (494)
T ss_dssp             HHCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHTT-------HHHHHHHHHHHHH-HHHH----HCCCCT
T ss_pred             cCeEEEEEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHHHH-------hhhhhhhhhhhHH-HHhc----cCCCCC
Confidence            344444 4779999998  778899999999999998 9999543       4443332222222 3211    233588


Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-----CCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM  222 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l  222 (286)
                      |++|+|+|+|.||+.+|++++++|++|+++++++.+.     .++. ..+++++++++|+|+.|++    +.++++++.+
T Consensus       274 GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~-~~~l~e~l~~aDvVi~atg----t~~~i~~~~l  348 (494)
T 3ce6_A          274 GKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFD-VVTVEEAIGDADIVVTATG----NKDIIMLEHI  348 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCHHHHGGGCSEEEECSS----SSCSBCHHHH
T ss_pred             cCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCE-EecHHHHHhCCCEEEECCC----CHHHHHHHHH
Confidence            9999999999999999999999999999999987542     2333 4578899999999999975    5568888899


Q ss_pred             hcCCCCcEEEEcCCCcc-cCHHHHHH-HHHhCCeeEEEeeccCCCCCCcCCcc--ccccc----ccccccC
Q 043239          223 TALGKEGVIINVGRGAL-IDEKELVH-FLVRGSLVELVLMCLRTSLMCQRSCL--HWIML----CCLHMLL  285 (286)
Q Consensus       223 ~~mk~g~ilvn~srg~~-vd~~al~~-al~~~~i~ga~lDv~~~e~~~~~~~l--~~~~~----~tph~~~  285 (286)
                      +.||+|++++|+||+.. +|..+|.. +|+++.|. +.+|+++.++...+..+  ..+.+    +|||+++
T Consensus       349 ~~mk~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~~~~l~LL~~grlvnL~~~TPH~a~  418 (494)
T 3ce6_A          349 KAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSF  418 (494)
T ss_dssp             HHSCTTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTTCCEEEEEGGGSCHHHHHSCCSCHH
T ss_pred             HhcCCCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCcchHHHHHhCCCEEeccCCCCCccc
Confidence            99999999999999998 99999998 88888887 56798865331121111  11122    8999864

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.83  E-value=6.2e-21  Score=178.23  Aligned_cols=245  Identities=11%  Similarity=0.085  Sum_probs=171.4

Q ss_pred             hhcccCCCCCCchhhhC-CCcEEecCCCC----CCCchHHH----------HhccCCceEEEEeCCCCCCHHHhccCCCc
Q 043239            7 DAYRRGAPGCFNPPLSE-RFTLLDPLLHS----ADSTHSFL----------SRHASSVRAILCLGPSPLTSDTLSLLPAL   71 (286)
Q Consensus         7 ~~~~~~~~~~~~~~l~~-~~~~~~~~~~~----~~~~~~~~----------~~~~~~~d~i~~~~~~~~~~~~l~~~~~L   71 (286)
                      .-+|-.+.|...++|.+ .++++ +....    .-+-+++.          .+.++++|+|+. ...++++++....++.
T Consensus        12 ~E~Rv~ltP~~v~~L~~~G~~V~-ve~~ag~~~~f~d~~y~~aGa~i~~~~~~~~~~adii~~-vk~p~~~e~~~l~~~~   89 (377)
T 2vhw_A           12 NEFRVAITPAGVAELTRRGHEVL-IQAGAGEGSAITDADFKAAGAQLVGTADQVWADADLLLK-VKEPIAAEYGRLRHGQ   89 (377)
T ss_dssp             TCCCCSCCHHHHHHHHHTTCEEE-EETTTTGGGTCCHHHHHHHTCEEESCHHHHHHHCSEEEC-SSCCCGGGGGGCCTTC
T ss_pred             CCcccCcCHHHHHHHHhCCCEEE-EeCCCCcCCCCCHHHHHHCCCEEecCHHHHhccCCEEEE-eCCCChHHHhhcCCCC
Confidence            34555667777777765 45554 32111    11123332          133446898764 3456777777777888


Q ss_pred             cEEEEcCCCCCcCChhHHhhcCeEEE----------ecCCCCCcChHHHHHHHHHHHH-hcchHHHHHHHcCCCCCCCCC
Q 043239           72 EIVVGSTAGIDHVDLQECRRRGILVT----------NAGNAFSEDGADYVVGLLVDVL-RRVSSIDRFVRNGLWPDHGAY  140 (286)
Q Consensus        72 k~i~~~~~G~d~id~~~~~~~gI~v~----------n~~~~~~~~vAE~~l~~~L~~~-R~~~~~~~~~~~~~w~~~~~~  140 (286)
                      .++.....++|...++.+.++||++.          |.|.+  .++||++..+++.+. |++..    ...|.|....  
T Consensus        90 ~l~~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~--s~~ae~ag~~a~~~a~r~l~~----~~~g~~~~~~--  161 (377)
T 2vhw_A           90 ILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLL--APMSEVAGRLAAQVGAYHLMR----TQGGRGVLMG--  161 (377)
T ss_dssp             EEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTT--HHHHHHHHHHHHHHHHHHTSG----GGTSCCCCTT--
T ss_pred             EEEEEecccCCHHHHHHHHHcCCeEEEeeeccccCCCcccc--CchHHHHHHHHHHHHHHHHHH----hcCCCccccc--
Confidence            88888788888888999999999997          44544  477799985554444 77633    3344433211  


Q ss_pred             CCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------Ccc------cccCHHHhhcCCCEEEEec-
Q 043239          141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SYP------FYANVSGLAADSDVLIVCC-  207 (286)
Q Consensus       141 ~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~~------~~~~l~e~l~~aDiV~~~l-  207 (286)
                       ...++.|++|+|+|+|.||+.+++.++++|++|+++|++.++..      +..      ...+++++++++|+|+.++ 
T Consensus       162 -~~~~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~  240 (377)
T 2vhw_A          162 -GVPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVL  240 (377)
T ss_dssp             -CBTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCC
T ss_pred             -CCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCC
Confidence             12368999999999999999999999999999999999765421      211      1346778889999999977 


Q ss_pred             -cCChhhhhcccHHHHhcCCCCcEEEEcC--CCcccCHHHHHHHHHhCCeeEEEeeccCC-CCCCcCCcccccc----cc
Q 043239          208 -ALTEETHHMINKDVMTALGKEGVIINVG--RGALIDEKELVHFLVRGSLVELVLMCLRT-SLMCQRSCLHWIM----LC  279 (286)
Q Consensus       208 -p~~~~t~~~i~~~~l~~mk~g~ilvn~s--rg~~vd~~al~~al~~~~i~ga~lDv~~~-e~~~~~~~l~~~~----~~  279 (286)
                       |.+ ++..++.++.++.||+|++|||+|  +|+                      ||+. ||.+.+.+++...    .+
T Consensus       241 ~p~~-~t~~li~~~~l~~mk~g~~iV~va~~~Gg----------------------v~e~~ep~~~~~~~~~~~~v~i~~  297 (377)
T 2vhw_A          241 VPGA-KAPKLVSNSLVAHMKPGAVLVDIAIDQGG----------------------CFEGSRPTTYDHPTFAVHDTLFYC  297 (377)
T ss_dssp             CTTS-CCCCCBCHHHHTTSCTTCEEEEGGGGTTC----------------------SBTTCCCBCSSSCEEEETTEEEEC
T ss_pred             cCCC-CCcceecHHHHhcCCCCcEEEEEecCCCC----------------------ccccccCCCCCCCEEEECCEEEEe
Confidence             444 678889999999999999999998  332                      6777 7766666555443    39


Q ss_pred             cccccC
Q 043239          280 CLHMLL  285 (286)
Q Consensus       280 tph~~~  285 (286)
                      |||+++
T Consensus       298 ~phl~~  303 (377)
T 2vhw_A          298 VANMPA  303 (377)
T ss_dssp             BTTGGG
T ss_pred             cCCcch
Confidence            999986

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.70  E-value=4.6e-18  Score=159.95  Aligned_cols=224  Identities=15%  Similarity=0.164  Sum_probs=147.8

Q ss_pred             hcccCCCCCCchhhhC-CCcEEecCCCCC----CCchHHHH---------hccCCceEEEEeCCCCCCHHHhccC-CCcc
Q 043239            8 AYRRGAPGCFNPPLSE-RFTLLDPLLHSA----DSTHSFLS---------RHASSVRAILCLGPSPLTSDTLSLL-PALE   72 (286)
Q Consensus         8 ~~~~~~~~~~~~~l~~-~~~~~~~~~~~~----~~~~~~~~---------~~~~~~d~i~~~~~~~~~~~~l~~~-~~Lk   72 (286)
                      -+|-...|....+|.+ .+.+.... ..+    -+-+++.+         +..+ +|+|+.. .. .+++.++.+ |+++
T Consensus        20 E~Rv~ltP~~v~~L~~~G~~V~ve~-~ag~~~gf~d~~y~~aGa~i~~~~~~~~-adiil~v-k~-p~~~~i~~l~~~~~   95 (401)
T 1x13_A           20 ETRVAATPKTVEQLLKLGFTVAVES-GAGQLASFDDKAFVQAGAEIVEGNSVWQ-SEIILKV-NA-PLDDEIALLNPGTT   95 (401)
T ss_dssp             CCCCSCCHHHHHHHHHTTCEEEEET-TTTGGGTCCHHHHHHHTCEEECGGGGGS-SSEEECS-SC-CCHHHHTTCCTTCE
T ss_pred             CeeeCCCHHHHHHHHHCCCEEEEEE-CCCcccCCChHHHHHCCCEEeccHHHhc-CCeEEEe-CC-CCHHHHHHhcCCCc
Confidence            3455566666677755 45543321 111    11133321         1333 8988763 22 357778887 7899


Q ss_pred             EEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHH--HHHHHcCCC--CCCCC---CCCccc
Q 043239           73 IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSI--DRFVRNGLW--PDHGA---YPLGST  145 (286)
Q Consensus        73 ~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~--~~~~~~~~w--~~~~~---~~~~~~  145 (286)
                      +|+..+.|+|+++++++.++||++.+.     +.|+|++.++.|.+++.+...  ...++.+.|  .+...   ...+ +
T Consensus        96 li~~~~~~~d~~~~~al~~~gI~v~~~-----e~v~~~~~a~~l~~l~~~a~~ag~~av~~~~~~~~~~~~~~~~~~g-~  169 (401)
T 1x13_A           96 LVSFIWPAQNPELMQKLAERNVTVMAM-----DSVPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAAG-K  169 (401)
T ss_dssp             EEECCCGGGCHHHHHHHHHTTCEEEEG-----GGCCCSGGGGGGCHHHHHHHHHHHHHHHHHHHHCSSCSSCEEETTE-E
T ss_pred             EEEEecCCCCHHHHHHHHHCCCEEEEe-----ehhhhhhhhcccchHHHHHHHHHHHHHHHHHHhcccccCCceeecc-C
Confidence            999999999999999999999999753     344444444433333332221  112222222  11100   0012 5


Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccccc---------------------------cCH
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFY---------------------------ANV  193 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~---------------------------~~l  193 (286)
                      +.|++|+|+|+|.||..+++.++.+|++|+++|++.....     +....                           .++
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l  249 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELF  249 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHH
Confidence            7899999999999999999999999999999999875421     22111                           036


Q ss_pred             HHhhcCCCEEEEe--ccCChhhhhcccHHHHhcCCCCcEEEEcC--CCcccCH
Q 043239          194 SGLAADSDVLIVC--CALTEETHHMINKDVMTALGKEGVIINVG--RGALIDE  242 (286)
Q Consensus       194 ~e~l~~aDiV~~~--lp~~~~t~~~i~~~~l~~mk~g~ilvn~s--rg~~vd~  242 (286)
                      .++++++|+|+.+  +|.. .+..+++++.++.||+|++|||+|  ||+.+++
T Consensus       250 ~e~~~~aDvVI~~~~~pg~-~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~  301 (401)
T 1x13_A          250 AAQAKEVDIIVTTALIPGK-PAPKLITREMVDSMKAGSVIVDLAAQNGGNCEY  301 (401)
T ss_dssp             HHHHHHCSEEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT
T ss_pred             HHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCc
Confidence            7888899999999  5532 356788899999999999999999  9888776

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.68  E-value=4.6e-17  Score=153.08  Aligned_cols=179  Identities=16%  Similarity=0.164  Sum_probs=124.5

Q ss_pred             CceEEEEeCCCCCCHHHhccCCCc----cEE-EEcCCCCCcCC-hhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhc
Q 043239           48 SVRAILCLGPSPLTSDTLSLLPAL----EIV-VGSTAGIDHVD-LQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRR  121 (286)
Q Consensus        48 ~~d~i~~~~~~~~~~~~l~~~~~L----k~i-~~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~  121 (286)
                      ..++|+=- ...++.-+-.+.|++    +=+ =-+++|+..+. .....+.+|+|.|++.    ++.++..-........
T Consensus       122 ~p~~ilDd-Ggdl~~~~h~~~~~~~~~i~G~~EeTttGv~rL~~~~~~g~L~iPVinvnd----svtk~~~Dn~~Gt~~s  196 (436)
T 3h9u_A          122 YPNMLLDD-GGDLTNYVLDECKELDGKIYGVSEETTTGVKNLYKRLQRGKLTIPAMNVND----SVTKSKFDNLYGCRES  196 (436)
T ss_dssp             CCSEEEES-SSHHHHHHHHHC-CCTTTCCCEEECSHHHHHHHHHHHHHTCCCSCEEECTT----SHHHHTTHHHHHHHHH
T ss_pred             CCceEecc-ccHHHHHHHHHhHHHHhhccceeeccCcChHHHHHHHHcCCCCCceEeech----hhhhhhhhccccchHH
Confidence            34555532 233444333444443    222 23456665542 3345678999999976    5555544444443333


Q ss_pred             chHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-----CCcccccCHHHh
Q 043239          122 VSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGL  196 (286)
Q Consensus       122 ~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~~~~~~~~l~e~  196 (286)
                      +......  .          .+.++.|++|||+|+|.||+.+|++|+++|++|+++++++...     .++ ...+++++
T Consensus       197 lldgi~r--a----------tg~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~-~~~sL~ea  263 (436)
T 3h9u_A          197 LVDGIKR--A----------TDVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGY-QVLLVEDV  263 (436)
T ss_dssp             HHHHHHH--H----------HCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-EECCHHHH
T ss_pred             HHHHHHH--h----------cCCcccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCC-eecCHHHH
Confidence            3222211  1          2456899999999999999999999999999999999976432     122 34699999


Q ss_pred             hcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHH
Q 043239          197 AADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGAL-IDEKELVHF  248 (286)
Q Consensus       197 l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~-vd~~al~~a  248 (286)
                      +++||+|+++    ..+.++|+++.|+.||+|++|||+|||.+ ||.++|.+.
T Consensus       264 l~~ADVVilt----~gt~~iI~~e~l~~MK~gAIVINvgRg~vEID~~~L~~~  312 (436)
T 3h9u_A          264 VEEAHIFVTT----TGNDDIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKAN  312 (436)
T ss_dssp             TTTCSEEEEC----SSCSCSBCTTTGGGCCTTEEEEECSSSGGGBCHHHHHHH
T ss_pred             HhhCCEEEEC----CCCcCccCHHHHhhcCCCcEEEEeCCCCCccCHHHHHhh
Confidence            9999999974    45788999999999999999999999997 999999864

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.66  E-value=1.8e-16  Score=148.24  Aligned_cols=228  Identities=14%  Similarity=0.173  Sum_probs=146.8

Q ss_pred             hcccCCCCCCchhhhC-CCcEEecCCCC----CCCchHHH----------HhccCCceEEEEeCCCCC----CHHHhccC
Q 043239            8 AYRRGAPGCFNPPLSE-RFTLLDPLLHS----ADSTHSFL----------SRHASSVRAILCLGPSPL----TSDTLSLL   68 (286)
Q Consensus         8 ~~~~~~~~~~~~~l~~-~~~~~~~~~~~----~~~~~~~~----------~~~~~~~d~i~~~~~~~~----~~~~l~~~   68 (286)
                      -+|-.+.|...++|.+ .+.+. +....    .-+-+++.          .+.++++|+|+.. ..++    +++.++.+
T Consensus        13 E~Rv~l~P~~v~~L~~~G~~V~-ve~~ag~~~~~~d~~y~~aGa~i~~~~~~~~~~adiil~v-~~p~~~~~~~~~i~~l   90 (384)
T 1l7d_A           13 EDRVAISPEVVKKLVGLGFEVI-VEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKV-QRPMTAEEGTDEVALI   90 (384)
T ss_dssp             CCCCSCCHHHHHHHHHTTCEEE-EETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEE-ECCCCGGGSCCGGGGS
T ss_pred             CcccCCCHHHHHHHHhCCCEEE-EEcCCCccCCCCHHHHHHCCCEEecChhhhhcCCCEEEEe-cCcccccCCHHHHHhh
Confidence            3455566666677766 44443 32111    11113332          2445789998874 3455    68888988


Q ss_pred             C-CccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCC--C-c-
Q 043239           69 P-ALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYP--L-G-  143 (286)
Q Consensus        69 ~-~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~--~-~-  143 (286)
                      + .+++++....+.|+.+++++.++||++++.. .....+++..+. +|+..+.+. ....+..+.|.....++  + + 
T Consensus        91 ~~~~~~i~~~~~~~~~~~~~~~~~~gi~~~~~e-~~~~~~~~~~l~-~l~~~a~~a-g~~av~~~~~~~~~~~~~~~~~~  167 (384)
T 1l7d_A           91 KEGAVLMCHLGALTNRPVVEALTKRKITAYAME-LMPRISRAQSMD-ILSSQSNLA-GYRAVIDGAYEFARAFPMMMTAA  167 (384)
T ss_dssp             CTTCEEEEECCGGGCHHHHHHHHHTTCEEEEGG-GCCCSGGGGGGC-HHHHHHHHH-HHHHHHHHHHHCSSCSSCEEETT
T ss_pred             ccCCEEEEEecccCCHHHHHHHHHCCCEEEEec-cccccccccccc-hhhHHHHHH-HHHHHHHHHHHhhhcccchhccC
Confidence            6 5899999999999999999999999999842 222222222222 222222221 11122222221000000  1 1 


Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccccc--c-------------------------
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFY--A-------------------------  191 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~--~-------------------------  191 (286)
                      .++.|++|+|+|+|.+|..+++.++.+|++|+++|++..+..     +....  .                         
T Consensus       168 ~~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~  247 (384)
T 1l7d_A          168 GTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQ  247 (384)
T ss_dssp             EEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhh
Confidence            368999999999999999999999999999999999876421     21111  0                         


Q ss_pred             --CHHHhhcCCCEEEEec--cCChhhhhcccHHHHhcCCCCcEEEEcC--CCcccC
Q 043239          192 --NVSGLAADSDVLIVCC--ALTEETHHMINKDVMTALGKEGVIINVG--RGALID  241 (286)
Q Consensus       192 --~l~e~l~~aDiV~~~l--p~~~~t~~~i~~~~l~~mk~g~ilvn~s--rg~~vd  241 (286)
                        .+.++++++|+|+.++  |.. .+..+++++.++.||+|+++||++  ||+.++
T Consensus       248 ~~~l~~~~~~aDvVi~~~~~pg~-~~~~li~~~~l~~mk~g~vivdva~~~gg~~~  302 (384)
T 1l7d_A          248 AEAVLKELVKTDIAITTALIPGK-PAPVLITEEMVTKMKPGSVIIDLAVEAGGNCP  302 (384)
T ss_dssp             HHHHHHHHTTCSEEEECCCCTTS-CCCCCSCHHHHTTSCTTCEEEETTGGGTCSST
T ss_pred             HHHHHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCCEEEEEecCCCCCee
Confidence              1678889999999887  433 245678899999999999999999  876543

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.65  E-value=9.4e-17  Score=149.39  Aligned_cols=217  Identities=14%  Similarity=0.107  Sum_probs=143.3

Q ss_pred             hhcccCCCCCCchhhhC-CCcEEecCCCC----CCCchHHHH---------hccCCceEEEEeCCCCCCHHHhccC-CCc
Q 043239            7 DAYRRGAPGCFNPPLSE-RFTLLDPLLHS----ADSTHSFLS---------RHASSVRAILCLGPSPLTSDTLSLL-PAL   71 (286)
Q Consensus         7 ~~~~~~~~~~~~~~l~~-~~~~~~~~~~~----~~~~~~~~~---------~~~~~~d~i~~~~~~~~~~~~l~~~-~~L   71 (286)
                      .-+|-.+.|...++|.+ .++++ +....    .-+-+++..         +.+ ++|+|+.. ..++ ++.++.+ ++.
T Consensus        12 ~e~Rv~l~P~~v~~L~~~g~~v~-ve~~ag~~~~~~d~~y~~aga~i~~~~~~~-~ad~il~v-k~p~-~~~~~~l~~~~   87 (369)
T 2eez_A           12 LENRVALTPGGVESLVRRGHTVL-VERGAGEGSGLSDAEYARAGAELVGREEAW-GAEMVVKV-KEPL-PEEYGFLREGL   87 (369)
T ss_dssp             TCCCCSSCHHHHHHHHHTTCEEE-EETTTTGGGTCCHHHHHHHTCEEECHHHHT-TSSEEECS-SCCC-GGGGGGCCTTC
T ss_pred             CCceeCcCHHHHHHHHhCCCEEE-EeCCCCccCCCCHHHHHHCCCEEeccccee-cCCEEEEE-CCCC-HHHHhhcCCCc
Confidence            35566677777777765 45553 32122    112233332         245 79998753 3444 4446665 789


Q ss_pred             cEEEEcCCCCCcCChhHHhhcCeEEE---ecCCC-CC----cChHHHHH--HHHHHHHhcchHHHHHHHcCCCCCCCCCC
Q 043239           72 EIVVGSTAGIDHVDLQECRRRGILVT---NAGNA-FS----EDGADYVV--GLLVDVLRRVSSIDRFVRNGLWPDHGAYP  141 (286)
Q Consensus        72 k~i~~~~~G~d~id~~~~~~~gI~v~---n~~~~-~~----~~vAE~~l--~~~L~~~R~~~~~~~~~~~~~w~~~~~~~  141 (286)
                      +++.....+.|..+++.+.++||++.   +.+.. ..    .++++.+-  +.+ ...+.+.....  .++.|..     
T Consensus        88 ~~~~~~~~~~~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~av~-~a~~~l~~~~~--g~~~~~~-----  159 (369)
T 2eez_A           88 ILFTYLHLAADRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMAPQ-VGAQFLEKPKG--GRGVLLG-----  159 (369)
T ss_dssp             EEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHHHH-HHHHHTSGGGT--SCCCCTT-----
T ss_pred             EEEEEecccCCHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHHHH-HHHHHHHHhcC--CCceecC-----
Confidence            99999999999999999999999997   44442 12    34455444  333 33333333210  1112221     


Q ss_pred             CcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------Ccc------cccCHHHhhcCCCEEEEeccC
Q 043239          142 LGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SYP------FYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       142 ~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~~------~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      ...++.+++|+|+|.|.||+.+++.++.+|++|++++++.++..      +..      ...+++++++++|+|+.|++.
T Consensus       160 ~~~~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~  239 (369)
T 2eez_A          160 GVPGVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLV  239 (369)
T ss_dssp             CBTBBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC-
T ss_pred             CCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCC
Confidence            12468999999999999999999999999999999998764321      111      124567788999999999986


Q ss_pred             Ch-hhhhcccHHHHhcCCCCcEEEEcC
Q 043239          210 TE-ETHHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       210 ~~-~t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      .. .+..++.++.++.||+|+++||++
T Consensus       240 ~~~~~~~li~~~~l~~mk~gg~iV~v~  266 (369)
T 2eez_A          240 PGAKAPKLVTRDMLSLMKEGAVIVDVA  266 (369)
T ss_dssp             ------CCSCHHHHTTSCTTCEEEECC
T ss_pred             CccccchhHHHHHHHhhcCCCEEEEEe
Confidence            65 577788999999999999999998

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.64  E-value=2.6e-16  Score=147.88  Aligned_cols=150  Identities=16%  Similarity=0.165  Sum_probs=113.6

Q ss_pred             cCCCCCcCC-hhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEc
Q 043239           77 STAGIDHVD-LQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVG  155 (286)
Q Consensus        77 ~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG  155 (286)
                      +++|+-.+- ....-...+++.|+.+    ++..+-+-......+.+.......            .+.++.|++++|+|
T Consensus       191 TtTGv~rL~~m~~~g~L~~PvinVnd----s~tK~~fDn~yG~~eslvdgI~Ra------------tg~~L~GKTVgVIG  254 (464)
T 3n58_A          191 TTTGVNRLYQLQKKGLLPFPAINVND----SVTKSKFDNKYGCKESLVDGIRRG------------TDVMMAGKVAVVCG  254 (464)
T ss_dssp             SHHHHHHHHHHHHHTCCCSCEEECTT----SHHHHTTHHHHHHHHHHHHHHHHH------------HCCCCTTCEEEEEC
T ss_pred             cccchHHHHHHHHcCCCCCCEEeecc----HhhhhhhhhhhcchHHHHHHHHHh------------cCCcccCCEEEEEC
Confidence            455555441 1222345688888654    777777766666655554433221            24569999999999


Q ss_pred             CChHHHHHHHHhccCCCEEEEECCCCCCC-----CCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcE
Q 043239          156 LGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGV  230 (286)
Q Consensus       156 ~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~i  230 (286)
                      +|.||+.+|++++++|++|+++++++...     .++ ...++++++++||+|+++.    .+.++|+++.|+.||+|++
T Consensus       255 ~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~-~vv~LeElL~~ADIVv~at----gt~~lI~~e~l~~MK~GAI  329 (464)
T 3n58_A          255 YGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGF-EVVTLDDAASTADIVVTTT----GNKDVITIDHMRKMKDMCI  329 (464)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTC-EECCHHHHGGGCSEEEECC----SSSSSBCHHHHHHSCTTEE
T ss_pred             cCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCc-eeccHHHHHhhCCEEEECC----CCccccCHHHHhcCCCCeE
Confidence            99999999999999999999998865321     122 2468999999999999864    3688999999999999999


Q ss_pred             EEEcCCCcc-cCHHHHHH
Q 043239          231 IINVGRGAL-IDEKELVH  247 (286)
Q Consensus       231 lvn~srg~~-vd~~al~~  247 (286)
                      |||+|||.+ +|.++|.+
T Consensus       330 LINvGRgdvEID~~aL~~  347 (464)
T 3n58_A          330 VGNIGHFDNEIQVAALRN  347 (464)
T ss_dssp             EEECSSSTTTBTCGGGTT
T ss_pred             EEEcCCCCcccCHHHHHh
Confidence            999999998 99998874

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.62  E-value=4.6e-16  Score=140.72  Aligned_cols=128  Identities=13%  Similarity=0.177  Sum_probs=107.0

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMT  223 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~  223 (286)
                      ++|||||+|.||..||++|.+.|++|++|||++++..     +.....++.|+++.||+|++|+|..+..+.++....+.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~   85 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVE   85 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHH
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHh
Confidence            4899999999999999999999999999999987654     34557899999999999999999888888888888999


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCccccc
Q 043239          224 ALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWI  276 (286)
Q Consensus       224 ~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~  276 (286)
                      .++++.++||+++..+-+.+.+.+.+.+.++......|+..++......+..+
T Consensus        86 ~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg~~~a~~g~l~im  138 (297)
T 4gbj_A           86 KLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAKVGNIC  138 (297)
T ss_dssp             HHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCCEEE
T ss_pred             hcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCCCccccccccceee
Confidence            99999999999999999999999999999999888888887765555544433

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.62  E-value=1.4e-16  Score=144.26  Aligned_cols=128  Identities=12%  Similarity=0.151  Sum_probs=111.0

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccH--HH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINK--DV  221 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~--~~  221 (286)
                      ++||+||+|.||..||++|.+.|++|++|||++++..     +.....++.|+++.||+|++|+|..++.+.++..  ..
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~   83 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   83 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSS
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhh
Confidence            5899999999999999999999999999999987543     5566789999999999999999999888887743  36


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCccccc
Q 043239          222 MTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWI  276 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~  276 (286)
                      ++.+++|.++||+|+.++-+.+.+.+.+++..+...-..|+...+.+.++.|..+
T Consensus        84 ~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaPVsGg~~~A~~G~L~im  138 (300)
T 3obb_A           84 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFM  138 (300)
T ss_dssp             TTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHHTCEEEE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCCCCHHHHHhCCEEEE
Confidence            8889999999999999999999999999999999888888888776666655444

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=99.57  E-value=5.4e-17  Score=152.98  Aligned_cols=130  Identities=18%  Similarity=0.144  Sum_probs=97.7

Q ss_pred             ccc-CCCCEEEEEcCChHHHHHHHHhcc-CCCEEEEECCCCCCCCCcccccCHHHhhcCCCE-EEEeccCChhhhhcccH
Q 043239          143 GST-LGGKRVGIVGLGSIGSEVAKRLVP-FGCSIAYTSRKKKPGVSYPFYANVSGLAADSDV-LIVCCALTEETHHMINK  219 (286)
Q Consensus       143 ~~~-l~g~~vgIiG~G~iG~~~A~~l~~-~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDi-V~~~lp~~~~t~~~i~~  219 (286)
                      |.+ ++|++++|+|+|+||+.+|+++++ +|++|++++++....... ...+++++++.+|. .++ +|+ ++|++ ++.
T Consensus       206 G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~~~~~-~gvdl~~L~~~~d~~~~l-~~l-~~t~~-i~~  281 (419)
T 1gtm_A          206 GWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNP-DGLNADEVLKWKNEHGSV-KDF-PGATN-ITN  281 (419)
T ss_dssp             TCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEE-EEECHHHHHHHHHHHSSS-TTC-TTSEE-ECH
T ss_pred             CCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCccccCc-cCCCHHHHHHHHHhcCEe-ecC-ccCee-eCH
Confidence            556 999999999999999999999999 999999885443211110 11266776664443 222 465 56777 788


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcC-Cccc--ccccccccc
Q 043239          220 DVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQR-SCLH--WIMLCCLHM  283 (286)
Q Consensus       220 ~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~-~~l~--~~~~~tph~  283 (286)
                      +.|..||+ .++||++||.+||+++ +++|+.+.|.+++     .||++++ .+++  .+.++|||+
T Consensus       282 ~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~~V~itPhi  341 (419)
T 1gtm_A          282 EELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEKGILQIPDF  341 (419)
T ss_dssp             HHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHTTCEEECHH
T ss_pred             HHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcCCEEEECch
Confidence            88899988 6999999999999999 6999999999887     6776543 3333  334999999

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.55  E-value=8.1e-15  Score=137.57  Aligned_cols=149  Identities=15%  Similarity=0.264  Sum_probs=107.4

Q ss_pred             cCCCCCcCC-hhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEc
Q 043239           77 STAGIDHVD-LQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVG  155 (286)
Q Consensus        77 ~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG  155 (286)
                      +++|+-.+- ....-+..++|.|..+    ++..+-+-........+......  .          .+..+.|++++|+|
T Consensus       164 TttGv~rl~~~~~~g~L~~Pvi~vnd----s~tK~~fDn~yGt~~s~~~gi~r--a----------t~~~L~GktV~ViG  227 (435)
T 3gvp_A          164 SVTGVHRLYQLSKAGKLCVPAMNVND----SVTKQKFDNLYCCRESILDGLKR--T----------TDMMFGGKQVVVCG  227 (435)
T ss_dssp             CHHHHHHHTCC--CCCCCSCEEECTT----CHHHHHHHTHHHHHHHHHHHHHH--H----------HCCCCTTCEEEEEC
T ss_pred             cchhHHHHHHHHHcCCCCCCEEEecc----hhhhhhhhhhhhhHHHHHHHHHH--h----------hCceecCCEEEEEe
Confidence            455655441 2233356799998766    45555444443333322222111  1          23468999999999


Q ss_pred             CChHHHHHHHHhccCCCEEEEECCCCCCC-----CCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcE
Q 043239          156 LGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGV  230 (286)
Q Consensus       156 ~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~i  230 (286)
                      +|.||+.+|++++++|++|+++++++...     .++ ...+++++++++|+|++|    +.+.++|+++.|+.||+|++
T Consensus       228 ~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~-~v~~Leeal~~ADIVi~a----tgt~~lI~~e~l~~MK~gai  302 (435)
T 3gvp_A          228 YGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGF-RLVKLNEVIRQVDIVITC----TGNKNVVTREHLDRMKNSCI  302 (435)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-EECCHHHHTTTCSEEEEC----SSCSCSBCHHHHHHSCTTEE
T ss_pred             eCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCC-EeccHHHHHhcCCEEEEC----CCCcccCCHHHHHhcCCCcE
Confidence            99999999999999999999999876321     122 246899999999999995    34788999999999999999


Q ss_pred             EEEcCCCcc-cCHHHHH
Q 043239          231 IINVGRGAL-IDEKELV  246 (286)
Q Consensus       231 lvn~srg~~-vd~~al~  246 (286)
                      |||+|||.+ +|.++|.
T Consensus       303 lINvgrg~~EId~~~L~  319 (435)
T 3gvp_A          303 VCNMGHSNTEIDVASLR  319 (435)
T ss_dssp             EEECSSTTTTBTGGGGC
T ss_pred             EEEecCCCccCCHHHHH
Confidence            999999987 7777664

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.51  E-value=6.5e-15  Score=134.32  Aligned_cols=122  Identities=13%  Similarity=0.180  Sum_probs=102.4

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-----CCcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      ....++|||||+|.||..+|+.|...|++|++|||++++.     .+.....++++++++||+|++|+|.....+.++..
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~  107 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFA  107 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTT
T ss_pred             ccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcc
Confidence            3467899999999999999999999999999999987642     24455679999999999999999977677766643


Q ss_pred             -HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCC
Q 043239          220 -DVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSL  266 (286)
Q Consensus       220 -~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~  266 (286)
                       ..++.+++|.++||++++.+.+.+.+.+.+.+..+......|+..++
T Consensus       108 ~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~  155 (320)
T 4dll_A          108 QGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTV  155 (320)
T ss_dssp             TCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECHHH
T ss_pred             hhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHh
Confidence             56778999999999999999999999999999888776666766554

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.51  E-value=1.7e-14  Score=130.80  Aligned_cols=125  Identities=15%  Similarity=0.104  Sum_probs=102.9

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhccc
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMIN  218 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~  218 (286)
                      .++..++|||||+|.||..+|+.|...|++|++|||++++..     +.....++.+++++||+|++|+|....++.++.
T Consensus         5 ~~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~   84 (306)
T 3l6d_A            5 DESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLG   84 (306)
T ss_dssp             CCCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHT
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhc
Confidence            356678999999999999999999999999999999876432     344567999999999999999997777777775


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCC
Q 043239          219 KDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMC  268 (286)
Q Consensus       219 ~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~  268 (286)
                      ++.+..+++|.++||+++..+.+.+.+.+.+.+..+......|+...|..
T Consensus        85 ~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~  134 (306)
T 3l6d_A           85 MPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNV  134 (306)
T ss_dssp             STTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGT
T ss_pred             ccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccc
Confidence            32345678999999999999999999999999888876666677655433

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.50  E-value=4.3e-14  Score=128.46  Aligned_cols=139  Identities=14%  Similarity=0.137  Sum_probs=95.5

Q ss_pred             HHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCC--CCC-----CCcccccCHHHhh
Q 043239          126 DRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKK--KPG-----VSYPFYANVSGLA  197 (286)
Q Consensus       126 ~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~--~~~-----~~~~~~~~l~e~l  197 (286)
                      +++.+++.|.+.+.++.......++|||||+|.||..+|+.|...|+ +|++|||+.  +..     .+.....++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~   81 (312)
T 3qsg_A            2 HHHHHHSSGVDLGTENLYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVA   81 (312)
T ss_dssp             -----------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHH
T ss_pred             CcccccccccccCcccccccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHH
Confidence            34566777776544444444556899999999999999999999999 999999973  221     2444567899999


Q ss_pred             cCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC--CeeEEEeeccCCCC
Q 043239          198 ADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG--SLVELVLMCLRTSL  266 (286)
Q Consensus       198 ~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~--~i~ga~lDv~~~e~  266 (286)
                      ++||+|++|+|...... .+ ++..+.++++.+|||+++..+....++.+.+.+.  .+......|+..++
T Consensus        82 ~~aDvVi~~vp~~~~~~-~~-~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~  150 (312)
T 3qsg_A           82 GECDVIFSLVTAQAALE-VA-QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVK  150 (312)
T ss_dssp             HHCSEEEECSCTTTHHH-HH-HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCST
T ss_pred             hcCCEEEEecCchhHHH-HH-HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCch
Confidence            99999999999766554 33 5678889999999999999999999999999886  66655556776544

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.48  E-value=3.1e-14  Score=129.23  Aligned_cols=124  Identities=10%  Similarity=0.029  Sum_probs=101.9

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcc
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMI  217 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i  217 (286)
                      .+....++|||||+|.||..+|+.|...|++|++|||+.++..     +.....++.+++++||+|++|+|....++.++
T Consensus        16 ~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~   95 (310)
T 3doj_A           16 PRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVV   95 (310)
T ss_dssp             --CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHH
T ss_pred             cccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHH
Confidence            3455668999999999999999999999999999999877542     34456789999999999999999766777665


Q ss_pred             --cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCC
Q 043239          218 --NKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSL  266 (286)
Q Consensus       218 --~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~  266 (286)
                        .++.++.+++|.++||+++..+...+.+.+.+.+..+......|+..++
T Consensus        96 ~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~~pv~g~~~  146 (310)
T 3doj_A           96 FDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKK  146 (310)
T ss_dssp             HSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHH
T ss_pred             hCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCCCCChh
Confidence              2456778999999999999999999999999998877766666665543

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.48  E-value=5.3e-14  Score=126.85  Aligned_cols=118  Identities=14%  Similarity=0.148  Sum_probs=101.1

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM  222 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l  222 (286)
                      .++|||||+|.||..+|+.|...|++|++|||++++..     +.....+++++++ ||+|++|+|....++.++ ++.+
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~-~~l~   92 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV-GELA   92 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH-HHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH-HHHH
Confidence            36899999999999999999999999999999987653     3445679999999 999999999777777776 6788


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCC
Q 043239          223 TALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLM  267 (286)
Q Consensus       223 ~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~  267 (286)
                      +.++++.++||+++..+...+.+.+.+.+..+......|+..++.
T Consensus        93 ~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~  137 (296)
T 3qha_A           93 GHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAA  137 (296)
T ss_dssp             TTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHH
T ss_pred             HhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHH
Confidence            889999999999999999999999999988777666667766543

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.45  E-value=1.1e-13  Score=128.07  Aligned_cols=124  Identities=13%  Similarity=0.190  Sum_probs=104.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-----CCcccccCHHHhhcCC---CEEEEeccCChhhhhcc
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGLAADS---DVLIVCCALTEETHHMI  217 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~~~~~~~~l~e~l~~a---DiV~~~lp~~~~t~~~i  217 (286)
                      +.+++|||||+|.||..+|+.|...|++|.+|||+.++.     .+.....+++++++++   |+|++|+|.. .+..++
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl   98 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML   98 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH
Confidence            467899999999999999999999999999999987642     2445567899999999   9999999976 777766


Q ss_pred             cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCC
Q 043239          218 NKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRS  271 (286)
Q Consensus       218 ~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~  271 (286)
                       +..++.+++|.+|||++++...+...+.+.+.+..+......|+..++....+
T Consensus        99 -~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G  151 (358)
T 4e21_A           99 -QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERG  151 (358)
T ss_dssp             -HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHC
T ss_pred             -HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcC
Confidence             56788899999999999999999999999999999988888888776544333

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.45  E-value=1.2e-13  Score=123.70  Aligned_cols=118  Identities=18%  Similarity=0.196  Sum_probs=99.9

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhccc--HHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMIN--KDV  221 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~--~~~  221 (286)
                      ++|||||+|.||..+|+.|...|++|++|||++++..     +.....++++++++||+|++|+|.....+.++.  ++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l   81 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV   81 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence            6899999999999999999999999999999877543     444567999999999999999997667777662  467


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCC
Q 043239          222 MTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSL  266 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~  266 (286)
                      ++.+++|.++||+++..+.+.+.+.+.+.+..+......|+..++
T Consensus        82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~  126 (287)
T 3pef_A           82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKK  126 (287)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHH
T ss_pred             hhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEECCCcCCHH
Confidence            788999999999999999999999999998877766666665553

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.42  E-value=6.8e-14  Score=126.43  Aligned_cols=120  Identities=18%  Similarity=0.145  Sum_probs=98.9

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc-ccCHHHhhcCCCEEEEeccCChhhhhccc--H
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF-YANVSGLAADSDVLIVCCALTEETHHMIN--K  219 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~-~~~l~e~l~~aDiV~~~lp~~~~t~~~i~--~  219 (286)
                      .++|||||+|.||..+|+.|...|++|++|||++++..     +... ..++++++++||+|++|+|.....+.++.  +
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~   86 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGED   86 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--C
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChh
Confidence            46899999999999999999999999999999876432     3344 67889999999999999997666676653  4


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCC
Q 043239          220 DVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLM  267 (286)
Q Consensus       220 ~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~  267 (286)
                      +.++.+++|.++||+++..+...+.+.+.+.+..+......|+..++.
T Consensus        87 ~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~  134 (303)
T 3g0o_A           87 GVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPVSGGAVK  134 (303)
T ss_dssp             CCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHH
T ss_pred             hHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEeCCCCCChhh
Confidence            566789999999999999999999999999988777665666655543

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.42  E-value=1.2e-13  Score=123.69  Aligned_cols=117  Identities=16%  Similarity=0.130  Sum_probs=98.1

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhccc--HHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMIN--KDV  221 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~--~~~  221 (286)
                      ++|||||+|.||..+|+.|...|++|++|||++++..     +.....++++++++||+|++|+|..+.++.++.  ++.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l   81 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV   81 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence            4799999999999999999999999999999887643     344567999999999999999997667776652  456


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239          222 MTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS  265 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e  265 (286)
                      ++.+++|.++||++++.+...+.+.+.+.+..+......|+..+
T Consensus        82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~  125 (287)
T 3pdu_A           82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTK  125 (287)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCH
T ss_pred             hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEECCccCCH
Confidence            77899999999999999999999999998887776555666554

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.39  E-value=1.3e-12  Score=119.02  Aligned_cols=134  Identities=10%  Similarity=-0.003  Sum_probs=96.7

Q ss_pred             HHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCC-CEEEEECCCCCCC------------CCcccc
Q 043239          124 SIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFG-CSIAYTSRKKKPG------------VSYPFY  190 (286)
Q Consensus       124 ~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g-~~V~~~~r~~~~~------------~~~~~~  190 (286)
                      +++.+.+-..|.+..  ++ . --.++|||||+|.||..+|+.|...| ++|++|||+.+..            .+.  .
T Consensus         4 ~~~~~~~~~~~~~~~--~~-~-~M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~   77 (317)
T 4ezb_A            4 HHHHSSGVDLGTENL--YF-Q-SMMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--E   77 (317)
T ss_dssp             -----------CCCH--HH-H-TSCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--E
T ss_pred             ccccccccccCcccC--cc-c-ccCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--C
Confidence            344445555666431  11 1 12368999999999999999999999 9999999986311            122  4


Q ss_pred             c-CHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239          191 A-NVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS  265 (286)
Q Consensus       191 ~-~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e  265 (286)
                      . ++.+++++||+|++|+|.......+  ++..+.++++.++||+++..+...+.+.+.+.+..+......|+.++
T Consensus        78 ~~s~~e~~~~aDvVi~avp~~~~~~~~--~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~  151 (317)
T 4ezb_A           78 PLDDVAGIACADVVLSLVVGAATKAVA--ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARV  151 (317)
T ss_dssp             EESSGGGGGGCSEEEECCCGGGHHHHH--HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCS
T ss_pred             CCCHHHHHhcCCEEEEecCCHHHHHHH--HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCc
Confidence            5 7889999999999999976655543  67788899999999999999999999999999877766555677643

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.35  E-value=8.2e-13  Score=126.66  Aligned_cols=120  Identities=11%  Similarity=0.118  Sum_probs=101.8

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC--------C--cccccCHHHhhc---CCCEEEEeccCChhhh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV--------S--YPFYANVSGLAA---DSDVLIVCCALTEETH  214 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------~--~~~~~~l~e~l~---~aDiV~~~lp~~~~t~  214 (286)
                      .++|||||+|.||..+|++|...|++|.+|||+.++..        +  .....+++++++   ++|+|++++|..+.++
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   83 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVD   83 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHH
Confidence            46899999999999999999999999999999876421        1  112478888876   5999999999887888


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCC
Q 043239          215 HMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMC  268 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~  268 (286)
                      .++ ++..+.|++|.+|||++++...+...+.+.+.+..+......|+..++..
T Consensus        84 ~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA  136 (484)
T 4gwg_A           84 DFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGA  136 (484)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHH
T ss_pred             HHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHH
Confidence            777 57888999999999999999999999999999999988888888766433

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.31  E-value=2.1e-12  Score=123.93  Aligned_cols=120  Identities=15%  Similarity=0.192  Sum_probs=98.3

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC---------CcccccCHHHhhcC---CCEEEEeccCChhh
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV---------SYPFYANVSGLAAD---SDVLIVCCALTEET  213 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~---------~~~~~~~l~e~l~~---aDiV~~~lp~~~~t  213 (286)
                      .+.++|||||+|.||+.+|+.|...|++|.+|+|++++..         +.....++++++++   +|+|++++|..+.+
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v   92 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGT   92 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHH
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHH
Confidence            3456899999999999999999999999999999865421         33445788898877   99999999987788


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCC
Q 043239          214 HHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSL  266 (286)
Q Consensus       214 ~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~  266 (286)
                      +.++ ++..+.+++|.+|||++.|...+...+.+.+.+..+......|+..+.
T Consensus        93 ~~vl-~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~  144 (480)
T 2zyd_A           93 DAAI-DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEE  144 (480)
T ss_dssp             HHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHH
T ss_pred             HHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHh
Confidence            8887 467788999999999999998888899999988777665566665443

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.29  E-value=1e-13  Score=130.41  Aligned_cols=164  Identities=21%  Similarity=0.262  Sum_probs=123.1

Q ss_pred             CCccEEEEcCCCCCcCChhHHh-----hcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCC-CCCCC
Q 043239           69 PALEIVVGSTAGIDHVDLQECR-----RRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDH-GAYPL  142 (286)
Q Consensus        69 ~~Lk~i~~~~~G~d~id~~~~~-----~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~-~~~~~  142 (286)
                      +.+++|...++|+|++++.+..     ++++.+++.+|. ..+++++.+.+++.+.|++...... ..+.|... .....
T Consensus        80 ~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~-~~~~~~~~~~~a~~~~k~v~~~~~~-~~~~~s~a~~av~~  157 (404)
T 1gpj_A           80 EAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT-LDEALKIVFRRAINLGKRAREETRI-SEGAVSIGSAAVEL  157 (404)
T ss_dssp             HHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHSST-TCSCCSHHHHHHHH
T ss_pred             hHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC-chHHHHHHHHHHhhhhccCcchhhh-cCCCccHHHHHHHH
Confidence            5688999999999999998887     888999998887 5789999999999999987654322 22333210 00001


Q ss_pred             c----ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC------Ccc--cccCHHHhhcCCCEEEEeccC
Q 043239          143 G----STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV------SYP--FYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       143 ~----~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~------~~~--~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      .    .++.|++|+|+|+|.||+.+++.++.+|+ +|++++|+.++..      +..  ...++.+++.++|+|+.|+|.
T Consensus       158 a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~  237 (404)
T 1gpj_A          158 AERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA  237 (404)
T ss_dssp             HHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS
T ss_pred             HHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCC
Confidence            1    14789999999999999999999999999 9999999875421      221  235778888999999999874


Q ss_pred             ChhhhhcccHHHHhc--C----CCCcEEEEcCCC
Q 043239          210 TEETHHMINKDVMTA--L----GKEGVIINVGRG  237 (286)
Q Consensus       210 ~~~t~~~i~~~~l~~--m----k~g~ilvn~srg  237 (286)
                      +   ..+++++.+..  |    +++.++||++..
T Consensus       238 ~---~~~~~~~~l~~~~lk~r~~~~~v~vdia~P  268 (404)
T 1gpj_A          238 P---HPVIHVDDVREALRKRDRRSPILIIDIANP  268 (404)
T ss_dssp             S---SCCBCHHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred             C---CceecHHHHHHHHHhccCCCCEEEEEccCC
Confidence            3   55677777776  4    356788998753

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.27  E-value=7.4e-12  Score=120.62  Aligned_cols=117  Identities=13%  Similarity=0.175  Sum_probs=97.5

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC----------CCcccccCHHHhhcC---CCEEEEeccCChhhhh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG----------VSYPFYANVSGLAAD---SDVLIVCCALTEETHH  215 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~----------~~~~~~~~l~e~l~~---aDiV~~~lp~~~~t~~  215 (286)
                      .+|||||+|.||+.+|+.|...|++|.+|+|++++.          .+.....+++++++.   +|+|++++|..+.++.
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~   90 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVDA   90 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHHH
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHHH
Confidence            489999999999999999999999999999987542          123345788898877   9999999998778888


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCC
Q 043239          216 MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSL  266 (286)
Q Consensus       216 ~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~  266 (286)
                      ++ ++..+.+++|.+|||++.+...+...+.+.+.+..+......|+..+.
T Consensus        91 vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~  140 (497)
T 2p4q_A           91 LI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEE  140 (497)
T ss_dssp             HH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHH
T ss_pred             HH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChh
Confidence            77 567788999999999999998888999999988777665556666553

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.25  E-value=1.8e-11  Score=111.32  Aligned_cols=117  Identities=17%  Similarity=0.134  Sum_probs=88.0

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC-----Cc--ccccCHHH-hhcCCCEEEEeccCChhhh
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV-----SY--PFYANVSG-LAADSDVLIVCCALTEETH  214 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~-----~~--~~~~~l~e-~l~~aDiV~~~lp~~~~t~  214 (286)
                      +...++|||||+|.||+++|+.|+..|+  +|++|||+.+...     +.  ....++++ ++++||+|++|+|.. .+.
T Consensus        30 ~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~-~~~  108 (314)
T 3ggo_A           30 SLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFR  108 (314)
T ss_dssp             CCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGG-GHH
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHH-HHH
Confidence            3456899999999999999999999999  9999999875421     22  23467888 899999999999965 344


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239          215 HMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS  265 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e  265 (286)
                      .++ ++..+.++++++++|++.......+++.+.+.. ++.+ +-.++..|
T Consensus       109 ~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~-~~v~-~hPm~G~e  156 (314)
T 3ggo_A          109 EIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGK-RFVG-GHPIAGTE  156 (314)
T ss_dssp             HHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-GEEC-EEECCCCC
T ss_pred             HHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC-CEEe-cCcccCCc
Confidence            444 567788999999999987765556677776654 3322 24566555

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.24  E-value=8.1e-12  Score=110.56  Aligned_cols=177  Identities=15%  Similarity=0.153  Sum_probs=121.4

Q ss_pred             CCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHH
Q 043239           35 ADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGL  114 (286)
Q Consensus        35 ~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~  114 (286)
                      ++++.+.+......+.++.+  +.+++++++..+++++-++....|+|.++.    +.|-.+    ++|...     .++
T Consensus        40 ~~~l~~~i~~l~~~~~G~~v--t~P~k~~i~~~~~~l~~~a~~~gavn~i~~----~~g~~~----g~ntd~-----~g~  104 (263)
T 2d5c_A           40 LEALPGRLKEVRRAFRGVNL--TLPLKEAALAHLDWVSPEAQRIGAVNTVLQ----VEGRLF----GFNTDA-----PGF  104 (263)
T ss_dssp             GGGHHHHHHHHHHHCSEEEE--CTTCTTGGGGGCSEECHHHHHHTCCCEEEE----ETTEEE----EECCHH-----HHH
T ss_pred             HHHHHHHHHhccccCceEEE--cccCHHHHHHHHHHHhHHHHHhCCCCcEEc----cCCeEE----EeCCCH-----HHH
Confidence            34445554443222455555  356788899999999988889999999865    334222    233322     244


Q ss_pred             HHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------Ccc
Q 043239          115 LVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SYP  188 (286)
Q Consensus       115 ~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~~  188 (286)
                      +.++.|.                     +.++.| +++|||+|.||+++++.|...|++|.+++|+.++..      +..
T Consensus       105 ~~~l~~~---------------------~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~  162 (263)
T 2d5c_A          105 LEALKAG---------------------GIPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR  162 (263)
T ss_dssp             HHHHHHT---------------------TCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE
T ss_pred             HHHHHHh---------------------CCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc
Confidence            4443321                     225788 999999999999999999999999999999865422      112


Q ss_pred             cccCHHHhhcCCCEEEEeccCCh--hhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          189 FYANVSGLAADSDVLIVCCALTE--ETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       189 ~~~~l~e~l~~aDiV~~~lp~~~--~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                       ..+++++ +++|+|++|+|...  .+...+.   .+.+++|.+++|++.+. .++ .+.+++++..+.
T Consensus       163 -~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~---~~~l~~g~~viD~~~~p-~~t-~l~~~a~~~g~~  224 (263)
T 2d5c_A          163 -AVPLEKA-REARLLVNATRVGLEDPSASPLP---AELFPEEGAAVDLVYRP-LWT-RFLREAKAKGLK  224 (263)
T ss_dssp             -ECCGGGG-GGCSEEEECSSTTTTCTTCCSSC---GGGSCSSSEEEESCCSS-SSC-HHHHHHHHTTCE
T ss_pred             -hhhHhhc-cCCCEEEEccCCCCCCCCCCCCC---HHHcCCCCEEEEeecCC-ccc-HHHHHHHHCcCE
Confidence             4577888 99999999999763  2223443   46689999999999874 344 477877776554

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.24  E-value=4.6e-12  Score=113.58  Aligned_cols=115  Identities=18%  Similarity=0.258  Sum_probs=91.9

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhccc--HHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMIN--KDV  221 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~--~~~  221 (286)
                      ++|+|||+|.||..+++.|...|++|.+|+|+.+...     +.....+++++++++|+|++|+|.......++.  ++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l   85 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   85 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence            5899999999999999999999999999999865421     344457888999999999999997666666663  356


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccC
Q 043239          222 MTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLR  263 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~  263 (286)
                      .+.++++.++||+++|...+.+.+.+.+.+..+......++.
T Consensus        86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~  127 (299)
T 1vpd_A           86 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSG  127 (299)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEES
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCC
Confidence            677899999999999988788899999987655543333343

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.23  E-value=1.4e-11  Score=110.03  Aligned_cols=108  Identities=15%  Similarity=0.168  Sum_probs=88.1

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccH--HH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINK--DV  221 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~--~~  221 (286)
                      ++|+|||+|.||+.+|+.|...|++|.+|+ +.+...     +.....+++++++++|+|++|+|....+..++..  +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   82 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC   82 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH
Confidence            589999999999999999999999999999 765532     3344578899999999999999976666666532  45


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEE
Q 043239          222 MTALGKEGVIINVGRGALIDEKELVHFLVRGSLVEL  257 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga  257 (286)
                      .+.++++.++|+++++...+.+.+.+.+.+..+...
T Consensus        83 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~  118 (295)
T 1yb4_A           83 AKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYL  118 (295)
T ss_dssp             TTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence            567899999999999988888899999987655533

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.21  E-value=8.4e-11  Score=105.93  Aligned_cols=108  Identities=18%  Similarity=0.178  Sum_probs=77.2

Q ss_pred             HHHHHHHcCCCCCCCCCCCcccCCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCE
Q 043239          124 SIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDV  202 (286)
Q Consensus       124 ~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDi  202 (286)
                      ++..+++...|....  +     ..++|+||| +|.||+.+|+.|+..|++|.+++|+.+        .+..+++++||+
T Consensus         4 ~~~~~~~~~~~~~~~--~-----~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~--------~~~~~~~~~aDv   68 (298)
T 2pv7_A            4 ESYANENQFGFKTIN--S-----DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW--------AVAESILANADV   68 (298)
T ss_dssp             ---------CCCCSC--T-----TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG--------GGHHHHHTTCSE
T ss_pred             hHHhhhhccCccccC--C-----CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc--------cCHHHHhcCCCE
Confidence            444566677786421  1     246899999 999999999999999999999998753        267788999999


Q ss_pred             EEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 043239          203 LIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHF  248 (286)
Q Consensus       203 V~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~a  248 (286)
                      |++|+|.. .+..++ ++..+.++++++++|+++......+.+.+.
T Consensus        69 Vilavp~~-~~~~vl-~~l~~~l~~~~iv~~~~svk~~~~~~~~~~  112 (298)
T 2pv7_A           69 VIVSVPIN-LTLETI-ERLKPYLTENMLLADLTSVKREPLAKMLEV  112 (298)
T ss_dssp             EEECSCGG-GHHHHH-HHHGGGCCTTSEEEECCSCCHHHHHHHHHH
T ss_pred             EEEeCCHH-HHHHHH-HHHHhhcCCCcEEEECCCCCcHHHHHHHHh
Confidence            99999954 466666 356677999999999987765444555444

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.21  E-value=1.3e-11  Score=110.77  Aligned_cols=109  Identities=17%  Similarity=0.221  Sum_probs=89.8

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-----CCcccccCHHHhhcCCCEEEEeccCChhhhhccc--HHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGLAADSDVLIVCCALTEETHHMIN--KDV  221 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~--~~~  221 (286)
                      ++|+|||+|.||+.+++.|...|++|.+|+|+++..     .+.....+++++++++|+|++|+|....++.++.  ++.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   84 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGV   84 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchH
Confidence            689999999999999999999999999999976532     1344456888999999999999997766777764  356


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEE
Q 043239          222 MTALGKEGVIINVGRGALIDEKELVHFLVRGSLVEL  257 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga  257 (286)
                      .+.++++.++|++++|...+.+.+.+.+.+..+...
T Consensus        85 ~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~  120 (301)
T 3cky_A           85 LSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYV  120 (301)
T ss_dssp             HHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence            678899999999999987788889998887655443

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.20  E-value=3.5e-11  Score=107.04  Aligned_cols=133  Identities=14%  Similarity=0.080  Sum_probs=93.4

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC-----Ccc--cccCHHHhhc-CCCEEEEeccCChhhhhccc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV-----SYP--FYANVSGLAA-DSDVLIVCCALTEETHHMIN  218 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~-----~~~--~~~~l~e~l~-~aDiV~~~lp~~~~t~~~i~  218 (286)
                      ++|+|||+|.||+.+|+.|...|+  +|++++|+.+...     +..  ...+++++++ +||+|++|+|.. .+..++.
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~   80 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIAK   80 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHHH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHH-HHHHHHH
Confidence            589999999999999999999998  9999999765321     222  2457888899 999999999954 4555553


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCC---CCcCCcc-cc-cccccccccC
Q 043239          219 KDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSL---MCQRSCL-HW-IMLCCLHMLL  285 (286)
Q Consensus       219 ~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~---~~~~~~l-~~-~~~~tph~~~  285 (286)
                       +..+.++++.+++|++++.....+.+.+.+.++ +-+ ...++..+.   ......+ .. ..+++||.++
T Consensus        81 -~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~-~v~-~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~  149 (281)
T 2g5c_A           81 -KLSYILSEDATVTDQGSVKGKLVYDLENILGKR-FVG-GHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKT  149 (281)
T ss_dssp             -HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGG-EEC-EEEECCCSCCSGGGCCSSTTTTCEEEECCCSSS
T ss_pred             -HHHhhCCCCcEEEECCCCcHHHHHHHHHhcccc-cee-eccccCCccCChhhhhhHHhCCCCEEEecCCCC
Confidence             566779999999999988876677788888764 211 134444432   1111111 22 2488888653

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.19  E-value=1.4e-10  Score=108.53  Aligned_cols=97  Identities=15%  Similarity=0.307  Sum_probs=79.1

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc-----------------c------------c
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP-----------------F------------Y  190 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~-----------------~------------~  190 (286)
                      .+.+.+|+|+|+|.||..+++.++++|++|+++|++.....     +..                 .            .
T Consensus       187 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~  266 (405)
T 4dio_A          187 TVPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA  266 (405)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhH
Confidence            47899999999999999999999999999999999875411     111                 0            1


Q ss_pred             cCHHHhhcCCCEEEEec--cCChhhhhcccHHHHhcCCCCcEEEEcC--CCcccCH
Q 043239          191 ANVSGLAADSDVLIVCC--ALTEETHHMINKDVMTALGKEGVIINVG--RGALIDE  242 (286)
Q Consensus       191 ~~l~e~l~~aDiV~~~l--p~~~~t~~~i~~~~l~~mk~g~ilvn~s--rg~~vd~  242 (286)
                      .++.++++++|+|+.++  |.. ....+++++.++.||+|++|||+|  +|+.++.
T Consensus       267 ~~l~e~l~~aDVVI~tvlipg~-~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~  321 (405)
T 4dio_A          267 ALVAEHIAKQDIVITTALIPGR-PAPRLVTREMLDSMKPGSVVVDLAVERGGNIEG  321 (405)
T ss_dssp             HHHHHHHHTCSEEEECCCCSSS-CCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTT
T ss_pred             hHHHHHhcCCCEEEECCcCCCC-CCCEEecHHHHhcCCCCCEEEEEeCCCCCCccc
Confidence            26788899999999885  533 356788999999999999999999  8877654

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.18  E-value=4.1e-11  Score=115.06  Aligned_cols=116  Identities=11%  Similarity=0.138  Sum_probs=95.0

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC----------CCcccccCHHHhhc---CCCEEEEeccCChhhhh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG----------VSYPFYANVSGLAA---DSDVLIVCCALTEETHH  215 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~----------~~~~~~~~l~e~l~---~aDiV~~~lp~~~~t~~  215 (286)
                      ++|||||+|.||+.+|..|...|++|.+|+|+.++.          .+.....+++++++   ++|+|++++|....+..
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~   82 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence            579999999999999999999999999999986532          22334568888874   89999999997777777


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239          216 MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS  265 (286)
Q Consensus       216 ~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e  265 (286)
                      ++ ++..+.+++|.+|||++.|...+...+.+.+.+..+......|+..+
T Consensus        83 vl-~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~  131 (482)
T 2pgd_A           83 FI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGE  131 (482)
T ss_dssp             HH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHH
T ss_pred             HH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCCh
Confidence            77 46778899999999999999888888888898876666666666554

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.18  E-value=2.4e-11  Score=109.94  Aligned_cols=115  Identities=15%  Similarity=0.235  Sum_probs=90.6

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccH--HH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINK--DV  221 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~--~~  221 (286)
                      ++|+|||+|.||..+|+.|...|++|.+|+|+.+...     +.....++.++++++|+|++|+|....+..++..  ..
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~  110 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGV  110 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhH
Confidence            6899999999999999999999999999999876532     3334568889999999999999976666665533  23


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccC
Q 043239          222 MTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLR  263 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~  263 (286)
                      ++.++++.++||++++.....+.+.+.+....+......++.
T Consensus       111 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g  152 (316)
T 2uyy_A          111 LQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSG  152 (316)
T ss_dssp             GGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEES
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccC
Confidence            567899999999999888788888998876555544334443

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.18  E-value=9.3e-12  Score=109.09  Aligned_cols=93  Identities=14%  Similarity=0.280  Sum_probs=68.0

Q ss_pred             CcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCC--------------C------CCcccccCHHHhhcCCC
Q 043239          142 LGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP--------------G------VSYPFYANVSGLAADSD  201 (286)
Q Consensus       142 ~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~--------------~------~~~~~~~~l~e~l~~aD  201 (286)
                      ...++.+++|||||+|.||+.+|+.|...|++|++|+|++++              .      .+.....++.+++++||
T Consensus        13 ~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD   92 (245)
T 3dtt_A           13 ENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAE   92 (245)
T ss_dssp             ------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCS
T ss_pred             cccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCC
Confidence            456799999999999999999999999999999999998764              0      02233567889999999


Q ss_pred             EEEEeccCChhhhhcccHHH-HhcCCCCcEEEEcCCC
Q 043239          202 VLIVCCALTEETHHMINKDV-MTALGKEGVIINVGRG  237 (286)
Q Consensus       202 iV~~~lp~~~~t~~~i~~~~-l~~mk~g~ilvn~srg  237 (286)
                      +|++|+|..... ..+. +. .+.+ ++.++||++.|
T Consensus        93 vVilavp~~~~~-~~~~-~i~~~~l-~g~ivi~~s~~  126 (245)
T 3dtt_A           93 LVVNATEGASSI-AALT-AAGAENL-AGKILVDIANP  126 (245)
T ss_dssp             EEEECSCGGGHH-HHHH-HHCHHHH-TTSEEEECCCC
T ss_pred             EEEEccCcHHHH-HHHH-Hhhhhhc-CCCEEEECCCC
Confidence            999999965443 3332 23 3344 79999999943

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.18  E-value=2.1e-11  Score=116.86  Aligned_cols=116  Identities=15%  Similarity=0.199  Sum_probs=95.6

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC---------CcccccCHHHhhcC---CCEEEEeccCChhhhhc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV---------SYPFYANVSGLAAD---SDVLIVCCALTEETHHM  216 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~---------~~~~~~~l~e~l~~---aDiV~~~lp~~~~t~~~  216 (286)
                      ++|||||+|.||+.+|+.|...|++|.+|+|+.++..         +.....++++++++   +|+|++|+|....+..+
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v   85 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT   85 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence            5899999999999999999999999999999865421         23345788898876   99999999987777777


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239          217 INKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS  265 (286)
Q Consensus       217 i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e  265 (286)
                      + ++..+.+++|.+|||++.+...+...+.+.+.+..+......|+..+
T Consensus        86 l-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~  133 (474)
T 2iz1_A           86 I-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGE  133 (474)
T ss_dssp             H-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHH
T ss_pred             H-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCCh
Confidence            7 46778899999999999998888888999888766766666666544

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.17  E-value=2.2e-11  Score=108.98  Aligned_cols=106  Identities=17%  Similarity=0.229  Sum_probs=84.8

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-----CCcccccCHHHhhcCCCEEEEeccCChhhhhcccH--HH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINK--DV  221 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~--~~  221 (286)
                      ++|+|||+|.||+.+|+.|...|++|.+|+|+.++.     .+.....+++++++++|+|++|+|....++.++..  ..
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~   80 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI   80 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence            479999999999999999999999999999987542     23444568889999999999999977677766543  24


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239          222 MTALGKEGVIINVGRGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i  254 (286)
                      ++.++++.++|+++..++.+...+.+.+.+...
T Consensus        81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~  113 (296)
T 2gf2_A           81 LKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGA  113 (296)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred             HhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            567899999999888887777778777776433

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.16  E-value=2.8e-11  Score=116.08  Aligned_cols=116  Identities=18%  Similarity=0.271  Sum_probs=94.6

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------C-------cccccCHHHhhc---CCCEEEEeccCChh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------S-------YPFYANVSGLAA---DSDVLIVCCALTEE  212 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~-------~~~~~~l~e~l~---~aDiV~~~lp~~~~  212 (286)
                      ++|||||+|.||+.+|+.|...|++|.+|+|+.++..      +       .....+++++++   .+|+|++++|....
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~   81 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence            4799999999999999999999999999999765321      2       234568888877   49999999998777


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239          213 THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS  265 (286)
Q Consensus       213 t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e  265 (286)
                      ++.++ ++..+.+++|.+|||++.|...+...+.+.+.+..+......|+..+
T Consensus        82 v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~  133 (478)
T 1pgj_A           82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGE  133 (478)
T ss_dssp             HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHH
T ss_pred             HHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCH
Confidence            77777 46777899999999999998888888999998876766556666554

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.15  E-value=3.5e-11  Score=107.11  Aligned_cols=104  Identities=16%  Similarity=0.203  Sum_probs=84.6

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMT  223 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~  223 (286)
                      ++|+|||+|.||..+|+.|.. |++|.+|+|+.++..     +..... ++++++++|+|++|+|....+..++ ++..+
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~-~~l~~   78 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVA-EALYP   78 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHH-HHHTT
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHH-HHHHh
Confidence            479999999999999999999 999999999875432     222233 6778889999999999665566655 45667


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          224 ALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       224 ~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      .++++.++||++++...+.+.+.+.+.+..+.
T Consensus        79 ~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~  110 (289)
T 2cvz_A           79 YLREGTYWVDATSGEPEASRRLAERLREKGVT  110 (289)
T ss_dssp             TCCTTEEEEECSCCCHHHHHHHHHHHHTTTEE
T ss_pred             hCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            88999999999999888889999999876554

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=99.15  E-value=1.3e-11  Score=110.09  Aligned_cols=179  Identities=14%  Similarity=0.198  Sum_probs=118.8

Q ss_pred             CCCCchHHHHhcc-CCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHH
Q 043239           34 SADSTHSFLSRHA-SSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVV  112 (286)
Q Consensus        34 ~~~~~~~~~~~~~-~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l  112 (286)
                      .++++.+.+.... .+.+++.+.  .+..++++..++.+.-.+....++|.++.    +.|-.+    ++|...     .
T Consensus        50 ~~~~l~~~i~~l~~~~~~G~nvt--iP~k~~i~~~ld~l~~~A~~~gavnti~~----~~g~~~----g~nTd~-----~  114 (275)
T 2hk9_A           50 NPEELKKAFEGFKALKVKGINVT--VPFKEEIIPLLDYVEDTAKEIGAVNTVKF----ENGKAY----GYNTDW-----I  114 (275)
T ss_dssp             CGGGHHHHHHHHHHHTCCEEEEC--TTSTTTTGGGCSEECHHHHHHTCCCEEEE----ETTEEE----EECCHH-----H
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEC--ccCHHHHHHHHHHhhHHHHHhCCcceEEe----eCCEEE----eecCCH-----H
Confidence            3444555554321 256788773  56677888888888877777788887754    334222    233322     2


Q ss_pred             HHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------C
Q 043239          113 GLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------S  186 (286)
Q Consensus       113 ~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~  186 (286)
                      +++.++.+.                     +.++.|++++|||+|.||+++++.|...|++|++++|+.++..      +
T Consensus       115 G~~~~l~~~---------------------~~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g  173 (275)
T 2hk9_A          115 GFLKSLKSL---------------------IPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFP  173 (275)
T ss_dssp             HHHHHHHHH---------------------CTTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSC
T ss_pred             HHHHHHHHh---------------------CCCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcC
Confidence            444443321                     1246789999999999999999999999999999999864321      2


Q ss_pred             cccccCHHHhhcCCCEEEEeccCChh--hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          187 YPFYANVSGLAADSDVLIVCCALTEE--THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       187 ~~~~~~l~e~l~~aDiV~~~lp~~~~--t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      .....++.++++++|+|++++|....  +...++   ++.++++.+++|++.   . ...+++..++.++.
T Consensus       174 ~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~~i~---~~~l~~g~~viDv~~---~-~t~ll~~a~~~g~~  237 (275)
T 2hk9_A          174 LEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFN---YDLIKKDHVVVDIIY---K-ETKLLKKAKEKGAK  237 (275)
T ss_dssp             EEECSCGGGTGGGCSEEEECSSTTSSTTCCCSSC---GGGCCTTSEEEESSS---S-CCHHHHHHHHTTCE
T ss_pred             CeeehhHHhhhcCCCEEEEeCCCCCCCCCCCCCC---HHHcCCCCEEEEcCC---C-hHHHHHHHHHCcCE
Confidence            22334788889999999999996642  222343   456899999999988   2 33355555554443

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.12  E-value=1e-10  Score=104.59  Aligned_cols=112  Identities=14%  Similarity=0.159  Sum_probs=87.2

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCC------------------------------cccccCHHHhhc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS------------------------------YPFYANVSGLAA  198 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~------------------------------~~~~~~l~e~l~  198 (286)
                      ++|+|||+|.||..+|+.+...|++|++||++.+....                              .....+++++++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~   84 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK   84 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence            68999999999999999999999999999998753210                              123468888999


Q ss_pred             CCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccC
Q 043239          199 DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLR  263 (286)
Q Consensus       199 ~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~  263 (286)
                      +||+|+.++|.+.+....+.++..+.+++++++++.+.+  +....+.+++.. .-+.+++..+.
T Consensus        85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~--~~~~~la~~~~~-~~~~ig~h~~~  146 (283)
T 4e12_A           85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSST--LLPSDLVGYTGR-GDKFLALHFAN  146 (283)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHHHHSC-GGGEEEEEECS
T ss_pred             cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCC-CcceEEEccCC
Confidence            999999999988766666667788889999999965444  356677777754 33456677664

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=99.11  E-value=1e-10  Score=107.70  Aligned_cols=103  Identities=18%  Similarity=0.315  Sum_probs=86.2

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-----CCcccccCHHHhhc-CCCEEEEeccCChhhhhccc
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGLAA-DSDVLIVCCALTEETHHMIN  218 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~~~~~~~~l~e~l~-~aDiV~~~lp~~~~t~~~i~  218 (286)
                      ++.|++|+|+|+|++|+.+|++++.+|++|+++|++....     .+.. ..+.++++. +||+++-|     ++.++|+
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~-~v~~~ell~~~~DIliP~-----A~~~~I~  245 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHT-AVALEDVLSTPCDVFAPC-----AMGGVIT  245 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCGGGGGGCCCSEEEEC-----SCSCCBC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCE-EeChHHhhcCccceecHh-----HHHhhcC
Confidence            6899999999999999999999999999999999764321     1222 336778887 89999754     4788999


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          219 KDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       219 ~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      ++.++.|| ..+++|.+++.++++++ .++|+++++.
T Consensus       246 ~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIl  280 (355)
T 1c1d_A          246 TEVARTLD-CSVVAGAANNVIADEAA-SDILHARGIL  280 (355)
T ss_dssp             HHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCE
T ss_pred             HHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEE
Confidence            99999998 68999999999999777 6999999875

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.10  E-value=8.5e-11  Score=109.10  Aligned_cols=220  Identities=10%  Similarity=0.051  Sum_probs=129.0

Q ss_pred             hcccCCCCCCchhhhC-CCcEEecCCCCC----CCchHHHH------hccCCceEEEEeCCCCCCHHHhccCCC-ccEEE
Q 043239            8 AYRRGAPGCFNPPLSE-RFTLLDPLLHSA----DSTHSFLS------RHASSVRAILCLGPSPLTSDTLSLLPA-LEIVV   75 (286)
Q Consensus         8 ~~~~~~~~~~~~~l~~-~~~~~~~~~~~~----~~~~~~~~------~~~~~~d~i~~~~~~~~~~~~l~~~~~-Lk~i~   75 (286)
                      -.|-.+.|...+.|.+ .+++ .+....+    -+-+++.+      +.++ +|+|+.-  ...+++.++.+.. -.++.
T Consensus        35 E~RValtP~~v~~L~~~G~~V-~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~-adiIlkV--k~p~~~e~~~l~~g~~l~~  110 (381)
T 3p2y_A           35 ERRVALVPKVVEKLSARGLEV-VVESAAGAGALFSDADYERAGATIGDPWP-ADVVVKV--NPPTSDEISQLKPGSVLIG  110 (381)
T ss_dssp             CCCCSSCHHHHHHHHHTTCEE-EECTTTTGGGTCCHHHHHHTTCEESCCTT-SSEEECS--SCCCHHHHTTSCTTCEEEE
T ss_pred             CceecCCHHHHHHHHhCCCEE-EEeCCCCccCCCChHHHHHCCCEEeeeec-CCEEEEe--CCCChhHHhhccCCCEEEE
Confidence            4455666666777765 4444 3443322    11133322      1222 6777642  2345666666654 34444


Q ss_pred             EcCCCCCcCChhHHhhcCeEEEec---CCCC-Cc------ChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCccc
Q 043239           76 GSTAGIDHVDLQECRRRGILVTNA---GNAF-SE------DGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGST  145 (286)
Q Consensus        76 ~~~~G~d~id~~~~~~~gI~v~n~---~~~~-~~------~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~  145 (286)
                      ..-.-.|.=-+..+.++||+..-.   |... +.      +++|.+      .++-.......  -+....- .......
T Consensus       111 ~lh~~~~~~l~~~l~~~~it~ia~E~i~~~~~~~~l~~l~~~s~iA------Gy~Av~~aa~~--l~~~~~~-l~~~~~~  181 (381)
T 3p2y_A          111 FLAPRTQPELASRLRIADVTAFAMESIPRISRAQTMDALSSQANVA------GYKAVLLGASL--STRFVPM-LTTAAGT  181 (381)
T ss_dssp             CCCTTTCHHHHHHHHHTTCEEEEGGGCCSSGGGGGGCHHHHHHHHH------HHHHHHHHHHH--CSSCSSC-EECSSCE
T ss_pred             EeccccCHHHHHHHHHCCCeEEEeeccccccccccceeecchhHHH------HHHHHHHHHHH--hhhhhhh-hhcccCC
Confidence            333333322346788999998642   3211 11      122221      11111111111  1111100 0001235


Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc-------------------------cccCHHH
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP-------------------------FYANVSG  195 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~-------------------------~~~~l~e  195 (286)
                      +.+++|+|+|+|.||..+|+.++++|++|+++|++..+..     +..                         ...++.+
T Consensus       182 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e  261 (381)
T 3p2y_A          182 VKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALED  261 (381)
T ss_dssp             ECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHH
Confidence            7899999999999999999999999999999999875421     111                         0135778


Q ss_pred             hhcCCCEEEEec--cCChhhhhcccHHHHhcCCCCcEEEEcC--CCcccC
Q 043239          196 LAADSDVLIVCC--ALTEETHHMINKDVMTALGKEGVIINVG--RGALID  241 (286)
Q Consensus       196 ~l~~aDiV~~~l--p~~~~t~~~i~~~~l~~mk~g~ilvn~s--rg~~vd  241 (286)
                      .++++|+|+.++  |. ..+..+++++.++.||+|++|||+|  +|+.+.
T Consensus       262 ~l~~aDIVI~tv~iPg-~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e  310 (381)
T 3p2y_A          262 AITKFDIVITTALVPG-RPAPRLVTAAAATGMQPGSVVVDLAGETGGNCE  310 (381)
T ss_dssp             HHTTCSEEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBT
T ss_pred             HHhcCCEEEECCCCCC-cccceeecHHHHhcCCCCcEEEEEeCCCCCccc
Confidence            999999999875  53 2356688999999999999999998  777665

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.08  E-value=5.1e-11  Score=109.53  Aligned_cols=130  Identities=12%  Similarity=0.100  Sum_probs=86.9

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcC----CCEEEEeccCChhhhhccc
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAAD----SDVLIVCCALTEETHHMIN  218 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~----aDiV~~~lp~~~~t~~~i~  218 (286)
                      -++|||||+|.||+++|+.|+..|++|++|||+++...     +.....++++++++    ||+|++|+|. ..+..++ 
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~~~~vl-   85 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM-TAIDSLL-   85 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HHHHHHH-
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HHHHHHH-
Confidence            35799999999999999999999999999999875422     33445688887764    7999999994 4566666 


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEE-eeccCCC-CCC--cCCcccc--ccccccc
Q 043239          219 KDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELV-LMCLRTS-LMC--QRSCLHW--IMLCCLH  282 (286)
Q Consensus       219 ~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~-lDv~~~e-~~~--~~~~l~~--~~~~tph  282 (286)
                      ++... ++++++++|++..+....+++.+.+.  ..+..+ -.++..| ..+  ....|..  ..++||+
T Consensus        86 ~~l~~-~~~~~iv~Dv~Svk~~i~~~~~~~~~--~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~  152 (341)
T 3ktd_A           86 DAVHT-HAPNNGFTDVVSVKTAVYDAVKARNM--QHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFD  152 (341)
T ss_dssp             HHHHH-HCTTCCEEECCSCSHHHHHHHHHTTC--GGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCG
T ss_pred             HHHHc-cCCCCEEEEcCCCChHHHHHHHHhCC--CCcEecCCccccccccchhhhhhHHhcCCeEEEEeC
Confidence            33434 58999999998766443444444432  122222 4666655 222  1222221  3488886

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.07  E-value=1.7e-10  Score=103.03  Aligned_cols=102  Identities=23%  Similarity=0.237  Sum_probs=79.5

Q ss_pred             CCEEEEEcCChHHHHHHHHhccC--CCEEEEECCCCCCCC-----Cc--ccccCHHHhhcCCCEEEEeccCChhhhhccc
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPF--GCSIAYTSRKKKPGV-----SY--PFYANVSGLAADSDVLIVCCALTEETHHMIN  218 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~--g~~V~~~~r~~~~~~-----~~--~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~  218 (286)
                      -++|+|||+|.||+.+|+.|...  |++|++++++.+...     +.  ....+++++++++|+|++|+|.. ....++ 
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~-   83 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIK-KTIDFI-   83 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHH-HHHHHH-
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHH-HHHHHH-
Confidence            36899999999999999999876  679999999765321     22  13457778889999999999954 335555 


Q ss_pred             HHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239          219 KDVMTA-LGKEGVIINVGRGALIDEKELVHFLVR  251 (286)
Q Consensus       219 ~~~l~~-mk~g~ilvn~srg~~vd~~al~~al~~  251 (286)
                      ++..+. ++++.+++|+++......+.+.+.+.+
T Consensus        84 ~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~  117 (290)
T 3b1f_A           84 KILADLDLKEDVIITDAGSTKYEIVRAAEYYLKD  117 (290)
T ss_dssp             HHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTT
T ss_pred             HHHHhcCCCCCCEEEECCCCchHHHHHHHHhccc
Confidence            346677 899999999998877667788888775

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.05  E-value=1.7e-10  Score=101.56  Aligned_cols=98  Identities=12%  Similarity=0.156  Sum_probs=77.5

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCC--CCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRK--KKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~--~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      ++|+|||+|.||..+|+.|...|++|+++++.  .+...     +..  .+++++++++|+|++|+|.......+  .+.
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~--~~~   76 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGAA--RRA   76 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHHH--HHH
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHHH--HHH
Confidence            48999999999999999999999999998873  21111     222  67788899999999999976555543  456


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          222 MTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      .+.+++  ++||++.+.+.+.+.+.+.+.+.
T Consensus        77 ~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~  105 (264)
T 1i36_A           77 GRHVRG--IYVDINNISPETVRMASSLIEKG  105 (264)
T ss_dssp             HTTCCS--EEEECSCCCHHHHHHHHHHCSSS
T ss_pred             HHhcCc--EEEEccCCCHHHHHHHHHHHhhC
Confidence            677877  99999988887788888888764

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=99.01  E-value=4.1e-10  Score=107.41  Aligned_cols=142  Identities=15%  Similarity=0.198  Sum_probs=97.7

Q ss_pred             cCCCCCcCC-hhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEc
Q 043239           77 STAGIDHVD-LQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVG  155 (286)
Q Consensus        77 ~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG  155 (286)
                      +++|+..+- .....+..|++.|..+    ++..+.+-........+....  ++.          .+.++.|++++|+|
T Consensus       209 TttGv~rL~~~~~~g~L~iPvinvnD----s~tK~~fDn~yGt~~sl~dgi--~r~----------tg~~L~GKtVvVtG  272 (488)
T 3ond_A          209 TTTGVKRLYQMQANGTLLFPAINVND----SVTKSKFDNLYGCRHSLPDGL--MRA----------TDVMIAGKVAVVAG  272 (488)
T ss_dssp             SHHHHHHHHHHHHTTCCCSCEEECTT----SHHHHTTHHHHHHHHHHHHHH--HHH----------HCCCCTTCEEEEEC
T ss_pred             ccccHHHHHHHHHcCCCCCceecccc----hhhhhHhhhhccccHHHHHHH--HHH----------cCCcccCCEEEEEC
Confidence            456666542 1223356799999866    444432222222222111111  111          23458999999999


Q ss_pred             CChHHHHHHHHhccCCCEEEEECCCCCCCC----CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEE
Q 043239          156 LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVI  231 (286)
Q Consensus       156 ~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~il  231 (286)
                      +|.||+.+|++|+++|++|+++++++....    ......++++++..+|+|+.+.    .+.++++.+.+..||+++++
T Consensus       273 aGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv~~lee~~~~aDvVi~at----G~~~vl~~e~l~~mk~gaiV  348 (488)
T 3ond_A          273 YGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTT----GNKDIIMLDHMKKMKNNAIV  348 (488)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGTTTTCSEEEECS----SCSCSBCHHHHTTSCTTEEE
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCccCCHHHHHHhcCEEEeCC----CChhhhhHHHHHhcCCCeEE
Confidence            999999999999999999999998764321    1123467889999999998764    35678888899999999999


Q ss_pred             EEcCCCc
Q 043239          232 INVGRGA  238 (286)
Q Consensus       232 vn~srg~  238 (286)
                      +|+|++.
T Consensus       349 vNaG~~~  355 (488)
T 3ond_A          349 CNIGHFD  355 (488)
T ss_dssp             EESSSTT
T ss_pred             EEcCCCC
Confidence            9999983

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.00  E-value=2.7e-10  Score=104.55  Aligned_cols=89  Identities=20%  Similarity=0.261  Sum_probs=72.0

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC------CCcccccCHHHhhcCCCEEEEeccCChhhhhccc
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG------VSYPFYANVSGLAADSDVLIVCCALTEETHHMIN  218 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~------~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~  218 (286)
                      .+.+++|+|||+|.||+++|+.|+..|++|++++++.+..      .+.... ++++++++||+|++|+|... ...++.
T Consensus        13 ~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp~~~-~~~v~~   90 (338)
T 1np3_A           13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDEF-QGRLYK   90 (338)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHHH-HHHHHH
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCCcHH-HHHHHH
Confidence            4788999999999999999999999999999999986541      133333 88899999999999999543 355554


Q ss_pred             HHHHhcCCCCcEEEEcC
Q 043239          219 KDVMTALGKEGVIINVG  235 (286)
Q Consensus       219 ~~~l~~mk~g~ilvn~s  235 (286)
                      ++..+.+++++++++++
T Consensus        91 ~~i~~~l~~~~ivi~~~  107 (338)
T 1np3_A           91 EEIEPNLKKGATLAFAH  107 (338)
T ss_dssp             HHTGGGCCTTCEEEESC
T ss_pred             HHHHhhCCCCCEEEEcC
Confidence            46667899999999884

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.99  E-value=7.2e-10  Score=94.77  Aligned_cols=79  Identities=14%  Similarity=0.299  Sum_probs=63.4

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhc
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTA  224 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~  224 (286)
                      ++.+++|+|||+|.||+.+|+.|...|++|++++|+.+             .+++||+|++++| .+.+..++. +..+.
T Consensus        16 ~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~-------------~~~~aD~vi~av~-~~~~~~v~~-~l~~~   80 (209)
T 2raf_A           16 YFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ-------------ATTLGEIVIMAVP-YPALAALAK-QYATQ   80 (209)
T ss_dssp             ----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC-------------CSSCCSEEEECSC-HHHHHHHHH-HTHHH
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-------------HhccCCEEEEcCC-cHHHHHHHH-HHHHh
Confidence            47788999999999999999999999999999998754             5678999999999 566666653 34456


Q ss_pred             CCCCcEEEEcCCCcc
Q 043239          225 LGKEGVIINVGRGAL  239 (286)
Q Consensus       225 mk~g~ilvn~srg~~  239 (286)
                      ++ +.++|++++|-.
T Consensus        81 ~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           81 LK-GKIVVDITNPLN   94 (209)
T ss_dssp             HT-TSEEEECCCCBC
T ss_pred             cC-CCEEEEECCCCC
Confidence            77 999999999754

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.54  E-value=4.5e-11  Score=101.89  Aligned_cols=90  Identities=20%  Similarity=0.283  Sum_probs=71.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.+++|+|||+|.||+.+|+.|.+.|++|.+++|+.+...    +.. ..++.++++++|+|++++|.. .+..++  + 
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~~~~g~~-~~~~~~~~~~aDvVilav~~~-~~~~v~--~-   91 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAE-VLCYSEAASRSDVIVLAVHRE-HYDFLA--E-   91 (201)
Confidence            6788999999999999999999999999999999865211    222 237778899999999999964 566665  2 


Q ss_pred             HhcCCCCcEEEEcCCCccc
Q 043239          222 MTALGKEGVIINVGRGALI  240 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~v  240 (286)
                      +..++++.++||+++|-..
T Consensus        92 l~~~~~~~ivI~~~~G~~~  110 (201)
T 2yjz_A           92 LADSLKGRVLIDVSNNQKM  110 (201)
Confidence            3446789999999999753

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=98.98  E-value=4.2e-10  Score=106.85  Aligned_cols=92  Identities=15%  Similarity=0.328  Sum_probs=72.2

Q ss_pred             cccCCC-CEEEEEcCChHHHHHHHHhccC------CCEEEEECCCCCCC------CCccc----ccCHHHhhcCCCEEEE
Q 043239          143 GSTLGG-KRVGIVGLGSIGSEVAKRLVPF------GCSIAYTSRKKKPG------VSYPF----YANVSGLAADSDVLIV  205 (286)
Q Consensus       143 ~~~l~g-~~vgIiG~G~iG~~~A~~l~~~------g~~V~~~~r~~~~~------~~~~~----~~~l~e~l~~aDiV~~  205 (286)
                      ...|+| ++|||||+|+||.++|+.|+..      |++|++..++..+.      .++..    ..++.+++++||+|++
T Consensus        48 ~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVIL  127 (525)
T 3fr7_A           48 PEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLL  127 (525)
T ss_dssp             HHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEE
T ss_pred             hHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEE
Confidence            356899 9999999999999999999988      99987665543321      23332    2588999999999999


Q ss_pred             eccCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 043239          206 CCALTEETHHMINKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       206 ~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg  237 (286)
                      ++|..... .++. +.++.||+|++ |..+.|
T Consensus       128 aVP~~~~~-eVl~-eI~p~LK~GaI-Ls~AaG  156 (525)
T 3fr7_A          128 LISDAAQA-DNYE-KIFSHMKPNSI-LGLSHG  156 (525)
T ss_dssp             CSCHHHHH-HHHH-HHHHHSCTTCE-EEESSS
T ss_pred             CCChHHHH-HHHH-HHHHhcCCCCe-EEEeCC
Confidence            99976554 4665 78999999998 466667

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.98  E-value=1.6e-10  Score=101.86  Aligned_cols=98  Identities=11%  Similarity=0.261  Sum_probs=76.3

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCCE-EEEECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCChhhhh
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALTEETHH  215 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~-V~~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~  215 (286)
                      .+++.+++|+|||+|.||+.+++.|...|++ |.+++|+.+...      +.....+++++++++|+|++++|.. ....
T Consensus         5 ~~~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~-~~~~   83 (266)
T 3d1l_A            5 KRSIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDS-AFAE   83 (266)
T ss_dssp             --CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHH-HHHH
T ss_pred             hcCCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHH-HHHH
Confidence            3456678999999999999999999988998 899999865422      3334568888899999999999954 3454


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCH
Q 043239          216 MINKDVMTALGKEGVIINVGRGALIDE  242 (286)
Q Consensus       216 ~i~~~~l~~mk~g~ilvn~srg~~vd~  242 (286)
                      ++ ++..+.++++.++|+++.|...+.
T Consensus        84 v~-~~l~~~~~~~~ivv~~s~~~~~~~  109 (266)
T 3d1l_A           84 LL-QGIVEGKREEALMVHTAGSIPMNV  109 (266)
T ss_dssp             HH-HHHHTTCCTTCEEEECCTTSCGGG
T ss_pred             HH-HHHHhhcCCCcEEEECCCCCchHH
Confidence            44 455667889999999999876543

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.96  E-value=6e-10  Score=105.27  Aligned_cols=121  Identities=10%  Similarity=0.078  Sum_probs=87.2

Q ss_pred             CCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----------------------CcccccCHHHhh
Q 043239          141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----------------------SYPFYANVSGLA  197 (286)
Q Consensus       141 ~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----------------------~~~~~~~l~e~l  197 (286)
                      .++++..-++|+|||+|.||..+|..|.. |++|++||+++++..                       ......++.+++
T Consensus        29 ~~~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~  107 (432)
T 3pid_A           29 QMGRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAY  107 (432)
T ss_dssp             ------CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHH
T ss_pred             ccccccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHH
Confidence            35677778899999999999999999998 999999999875321                       122346788999


Q ss_pred             cCCCEEEEeccCChhh-------hhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239          198 ADSDVLIVCCALTEET-------HHMI--NKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS  265 (286)
Q Consensus       198 ~~aDiV~~~lp~~~~t-------~~~i--~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e  265 (286)
                      ++||+|++|+|...+.       ..+.  -+...+ +++|+++|+.|+-.+-..+.+.+.+.+..+.  ...+|..|
T Consensus       108 ~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v~--~sPe~~~~  181 (432)
T 3pid_A          108 RNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNVI--FSPEFLRE  181 (432)
T ss_dssp             TTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCEE--ECCCCCCT
T ss_pred             hCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccEe--ecCccCCc
Confidence            9999999999964211       1111  245666 8999999999999988899999988776543  24444433

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.95  E-value=4.4e-10  Score=107.44  Aligned_cols=105  Identities=9%  Similarity=0.178  Sum_probs=81.5

Q ss_pred             CEEEEEcCChHHHHHHHHhccC--CCEEEEECCCCCCCC------------------------CcccccCHHHhhcCCCE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF--GCSIAYTSRKKKPGV------------------------SYPFYANVSGLAADSDV  202 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~--g~~V~~~~r~~~~~~------------------------~~~~~~~l~e~l~~aDi  202 (286)
                      ++|+|||+|.||..+|..|...  |++|++||++.++..                        +.....++.+++++||+
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDv   85 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADL   85 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCE
Confidence            5899999999999999999988  899999999764311                        11223577888999999


Q ss_pred             EEEeccCChhhhhc-------------ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 043239          203 LIVCCALTEETHHM-------------INKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGS  253 (286)
Q Consensus       203 V~~~lp~~~~t~~~-------------i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~  253 (286)
                      |++|+|......++             ..+...+.|++|.++||.|+..+-..+.+.+.+.+..
T Consensus        86 ViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~  149 (467)
T 2q3e_A           86 VFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANT  149 (467)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTC
T ss_pred             EEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhC
Confidence            99999854432221             1234567789999999999988888888999888864

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.91  E-value=5.5e-10  Score=100.54  Aligned_cols=110  Identities=13%  Similarity=0.142  Sum_probs=79.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------------CcccccCHHHhhcCCCEEEEeccCChhh
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------------SYPFYANVSGLAADSDVLIVCCALTEET  213 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------------~~~~~~~l~e~l~~aDiV~~~lp~~~~t  213 (286)
                      -+.++|||||+|.||..||+.+. .|++|++||++++...            +.....++++ +++||+|+.|+|...+.
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~v   87 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNT   87 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHH
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHH
Confidence            35789999999999999999999 9999999999875432            1223456766 89999999999998887


Q ss_pred             hhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHhCCeeEEEeeccC
Q 043239          214 HHMINKDVMTALGKEGVII-NVGRGALIDEKELVHFLVRGSLVELVLMCLR  263 (286)
Q Consensus       214 ~~~i~~~~l~~mk~g~ilv-n~srg~~vd~~al~~al~~~~i~ga~lDv~~  263 (286)
                      +..+-.+ +..+ ++++++ |+|.-++   ..+.+.+. ..-+..++-.|.
T Consensus        88 k~~l~~~-l~~~-~~~IlasntSti~~---~~~a~~~~-~~~r~~G~Hf~~  132 (293)
T 1zej_A           88 KVEVLRE-VERL-TNAPLCSNTSVISV---DDIAERLD-SPSRFLGVHWMN  132 (293)
T ss_dssp             HHHHHHH-HHTT-CCSCEEECCSSSCH---HHHHTTSS-CGGGEEEEEECS
T ss_pred             HHHHHHH-HhcC-CCCEEEEECCCcCH---HHHHHHhh-cccceEeEEecC
Confidence            6666444 5556 998885 7777554   34444442 233456666666

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=98.90  E-value=1.4e-09  Score=96.33  Aligned_cols=99  Identities=17%  Similarity=0.287  Sum_probs=76.2

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cc--ccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SY--PFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~--~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      ++|+|||+|.||+.+|+.|...|++|++++|+.+...     +.  ....+++++ +++|+|++++|. ..+..++ ++.
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~-~~~~~~~-~~l   77 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPI-QLILPTL-EKL   77 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCH-HHHHHHH-HHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCH-HHHHHHH-HHH
Confidence            4899999999999999999999999999999765321     22  124578888 899999999994 4455555 356


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 043239          222 MTALGKEGVIINVGRGALIDEKELVHFLV  250 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~vd~~al~~al~  250 (286)
                      .+.++++.++||++.......+.+.+.+.
T Consensus        78 ~~~~~~~~~vv~~~~~~~~~~~~~~~~~~  106 (279)
T 2f1k_A           78 IPHLSPTAIVTDVASVKTAIAEPASQLWS  106 (279)
T ss_dssp             GGGSCTTCEEEECCSCCHHHHHHHHHHST
T ss_pred             HhhCCCCCEEEECCCCcHHHHHHHHHHhC
Confidence            67789999999997776665666655543

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.89  E-value=9.8e-10  Score=104.53  Aligned_cols=151  Identities=11%  Similarity=0.085  Sum_probs=100.6

Q ss_pred             CCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCC---CCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEE
Q 043239          101 NAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGA---YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYT  177 (286)
Q Consensus       101 ~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~---~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~  177 (286)
                      +.|-..|.|.+.+++|...|.         .++|.....   +.....-.=++|+|||+|.||..+|..+...|++|++|
T Consensus        13 ~~~~~~~~~~~~~~~~~a~~~---------~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~   83 (460)
T 3k6j_A           13 GENLYFQGSEVRSYLMEAHSL---------AGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLV   83 (460)
T ss_dssp             SGGGGGCBCHHHHHHHHTTCC---------TTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             ccchhhhhHHHHHHHHhHHHh---------hccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            445556777777777773322         345653211   11111122368999999999999999999999999999


Q ss_pred             CCCCCCC-------------CC-------------cccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEE
Q 043239          178 SRKKKPG-------------VS-------------YPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVI  231 (286)
Q Consensus       178 ~r~~~~~-------------~~-------------~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~il  231 (286)
                      |++.++.             .+             .....+++ .+++||+|+.++|...+.+..+-++..+.++++++|
T Consensus        84 D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIl  162 (460)
T 3k6j_A           84 VRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLENICKSTCIF  162 (460)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEE
T ss_pred             ECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEE
Confidence            9987621             01             11245664 689999999999987776655556777889999999


Q ss_pred             EEcCCCcccCHHHHHHHHHhCCeeEEEeeccCC
Q 043239          232 INVGRGALIDEKELVHFLVRGSLVELVLMCLRT  264 (286)
Q Consensus       232 vn~srg~~vd~~al~~al~~~~i~ga~lDv~~~  264 (286)
                      ++.+.+  +....+.+.+.. .-+.+++..|.+
T Consensus       163 asnTSs--l~i~~ia~~~~~-p~r~iG~HffnP  192 (460)
T 3k6j_A          163 GTNTSS--LDLNEISSVLRD-PSNLVGIHFFNP  192 (460)
T ss_dssp             EECCSS--SCHHHHHTTSSS-GGGEEEEECCSS
T ss_pred             EecCCC--hhHHHHHHhccC-CcceEEEEecch
Confidence            654333  344566655543 345677787773

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.88  E-value=3.7e-09  Score=96.16  Aligned_cols=102  Identities=15%  Similarity=0.233  Sum_probs=77.9

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCC----CEEEEECCCCC--CCC-----CcccccCHHHhhcCCCEEEEeccCChhhh
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFG----CSIAYTSRKKK--PGV-----SYPFYANVSGLAADSDVLIVCCALTEETH  214 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g----~~V~~~~r~~~--~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~  214 (286)
                      ...++|+|||+|.||..+|..|...|    ++|++|+|+.+  ...     +.....+..+++++||+|++|+| .....
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~   98 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIP   98 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHH
Confidence            34568999999999999999999988    78999999875  221     34445678889999999999999 45566


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239          215 HMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVR  251 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~  251 (286)
                      .++ ++..+.++++.++|+++.|-.  .+.+.+.+.+
T Consensus        99 ~vl-~~l~~~l~~~~ivvs~s~gi~--~~~l~~~l~~  132 (322)
T 2izz_A           99 FIL-DEIGADIEDRHIVVSCAAGVT--ISSIEKKLSA  132 (322)
T ss_dssp             HHH-HHHGGGCCTTCEEEECCTTCC--HHHHHHHHHT
T ss_pred             HHH-HHHHhhcCCCCEEEEeCCCCC--HHHHHHHHhh
Confidence            555 356667889999999977643  4556666664

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.88  E-value=1.5e-09  Score=86.96  Aligned_cols=85  Identities=19%  Similarity=0.334  Sum_probs=68.9

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------Cc--ccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SY--PFYANVSGLAADSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~--~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      +++|+|||.|.||+.+++.|...|++|.+++|+.++..      +.  ....++.++++++|+|++++|..   ..++..
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~---~~~~~~   97 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSK---TPIVEE   97 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCS---SCSBCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCC---CcEeeH
Confidence            78999999999999999999999999999999876432      11  23568889999999999999865   334544


Q ss_pred             HHHhcCCCCcEEEEcCCCc
Q 043239          220 DVMTALGKEGVIINVGRGA  238 (286)
Q Consensus       220 ~~l~~mk~g~ilvn~srg~  238 (286)
                         ..+++|.+++|++...
T Consensus        98 ---~~l~~g~~vid~~~p~  113 (144)
T 3oj0_A           98 ---RSLMPGKLFIDLGNPP  113 (144)
T ss_dssp             ---GGCCTTCEEEECCSSC
T ss_pred             ---HHcCCCCEEEEccCCc
Confidence               4578999999998754

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.88  E-value=9.7e-09  Score=97.52  Aligned_cols=103  Identities=14%  Similarity=0.268  Sum_probs=81.9

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----C---------------------cccccCHHHhhcCCCEE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----S---------------------YPFYANVSGLAADSDVL  203 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----~---------------------~~~~~~l~e~l~~aDiV  203 (286)
                      -+|+|||+|.||..+|..|...|++|++||+++++..    +                     .....++.+++++||+|
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvv   88 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAV   88 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEE
Confidence            3899999999999999999999999999999887521    1                     12346788999999999


Q ss_pred             EEeccCChh----------hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          204 IVCCALTEE----------THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       204 ~~~lp~~~~----------t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      ++|+|....          .+..+ +...+.+++|.++|+.|+-.+-..+.+.+.+.+.
T Consensus        89 ii~Vptp~~~~~~~~Dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~  146 (446)
T 4a7p_A           89 FIAVGTPSRRGDGHADLSYVFAAA-REIAENLTKPSVIVTKSTVPVGTGDEVERIIAEV  146 (446)
T ss_dssp             EECCCCCBCTTTCCBCTHHHHHHH-HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHH
T ss_pred             EEEcCCCCccccCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHh
Confidence            999885431          33333 4577889999999999987777778888877764

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.86  E-value=5.7e-09  Score=99.30  Aligned_cols=102  Identities=10%  Similarity=0.195  Sum_probs=79.8

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-------------------------CcccccCHHHhhcCCCEE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------------------------SYPFYANVSGLAADSDVL  203 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------------------------~~~~~~~l~e~l~~aDiV  203 (286)
                      ++|+|||+|.||..+|..|...|++|++||+++++..                         ......++++++++||+|
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV   82 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII   82 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence            6899999999999999999999999999999864311                         112346788889999999


Q ss_pred             EEeccCCh---------hhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239          204 IVCCALTE---------ETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVR  251 (286)
Q Consensus       204 ~~~lp~~~---------~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~  251 (286)
                      ++|+|...         ....++ +...+.+++|.++|+.|.-.+-..+.+.+.+.+
T Consensus        83 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~  138 (450)
T 3gg2_A           83 FIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE  138 (450)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence            99998543         333333 456778999999999997666666777776665

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.84  E-value=1.7e-09  Score=94.52  Aligned_cols=99  Identities=13%  Similarity=0.283  Sum_probs=74.8

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCC----EEEEECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCChhhhhccc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGC----SIAYTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALTEETHHMIN  218 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~----~V~~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~  218 (286)
                      ++|+|||+|.||+.+++.|...|+    +|.+|+|++++..      +.....++.++++++|+|++|+|. .....++ 
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~-~~~~~v~-   80 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKP-DLYASII-   80 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCT-TTHHHHC-
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCH-HHHHHHH-
Confidence            589999999999999999999998    9999999876432      344567889999999999999973 3445555 


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239          219 KDVMTALGKEGVIINVGRGALIDEKELVHFLVR  251 (286)
Q Consensus       219 ~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~  251 (286)
                      ++..+.++++.++|++..|-  ..+.+.+.+..
T Consensus        81 ~~l~~~l~~~~~vvs~~~gi--~~~~l~~~~~~  111 (247)
T 3gt0_A           81 NEIKEIIKNDAIIVTIAAGK--SIESTENAFNK  111 (247)
T ss_dssp             ---CCSSCTTCEEEECSCCS--CHHHHHHHHCS
T ss_pred             HHHHhhcCCCCEEEEecCCC--CHHHHHHHhCC
Confidence            45666788999999776553  34566666644

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.83  E-value=6.5e-09  Score=83.28  Aligned_cols=103  Identities=17%  Similarity=0.282  Sum_probs=81.6

Q ss_pred             CCCCEEEEEcC----ChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          146 LGGKRVGIVGL----GSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       146 l~g~~vgIiG~----G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.-++|+|||+    |.||..+++.|...|++|+.++++.++..+...+.|++|+....|++++++| .+....++. +.
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v~~-~~   89 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVAK-EA   89 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSC-HHHHHHHHH-HH
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeECCeeecCCHHHhCCCCCEEEEEeC-HHHHHHHHH-HH
Confidence            45678999999    9999999999999999999999886555566677899999999999999999 466666664 34


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          222 MTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      .+ +..+.++++.+.    ..+++.+++++.+++
T Consensus        90 ~~-~g~~~i~~~~~~----~~~~l~~~a~~~Gi~  118 (138)
T 1y81_A           90 VE-AGFKKLWFQPGA----ESEEIRRFLEKAGVE  118 (138)
T ss_dssp             HH-TTCCEEEECTTS----CCHHHHHHHHHHTCE
T ss_pred             HH-cCCCEEEEcCcc----HHHHHHHHHHHCCCE
Confidence            44 566778887754    267888888887776

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.81  E-value=2.2e-09  Score=95.80  Aligned_cols=88  Identities=15%  Similarity=0.294  Sum_probs=70.2

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM  222 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l  222 (286)
                      ++|+|||+ |.||+.+|+.|...|++|++|+|+.+...     +.. ..++.+++++||+|++++|... +..++ ++..
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~-~~~~~~~~~~aDvVi~av~~~~-~~~v~-~~l~   88 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIP-LTDGDGWIDEADVVVLALPDNI-IEKVA-EDIV   88 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCC-CCCSSGGGGTCSEEEECSCHHH-HHHHH-HHHG
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCC-cCCHHHHhcCCCEEEEcCCchH-HHHHH-HHHH
Confidence            58999999 99999999999999999999999765321     222 2367788899999999999543 55555 4566


Q ss_pred             hcCCCCcEEEEcCCCcc
Q 043239          223 TALGKEGVIINVGRGAL  239 (286)
Q Consensus       223 ~~mk~g~ilvn~srg~~  239 (286)
                      +.++++.++|+++.|..
T Consensus        89 ~~l~~~~ivv~~s~~~~  105 (286)
T 3c24_A           89 PRVRPGTIVLILDAAAP  105 (286)
T ss_dssp             GGSCTTCEEEESCSHHH
T ss_pred             HhCCCCCEEEECCCCch
Confidence            77899999999988863

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.79  E-value=5.1e-09  Score=94.19  Aligned_cols=112  Identities=10%  Similarity=0.127  Sum_probs=78.3

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------------C------------------cccccCHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------S------------------YPFYANVS  194 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~------------------~~~~~~l~  194 (286)
                      ++|+|||+|.||..+|..|...|++|++||++.+...                +                  .....+++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~   95 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   95 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence            5899999999999999999999999999999854311                0                  11245777


Q ss_pred             HhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccC
Q 043239          195 GLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLR  263 (286)
Q Consensus       195 e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~  263 (286)
                      +.+++||+|++++|...+....+-++..+.++++++++..+.+  +....+.+.+.. .-+.++...+.
T Consensus        96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~--i~~~~l~~~~~~-~~~~~g~h~~~  161 (302)
T 1f0y_A           96 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSS--LQITSIANATTR-QDRFAGLHFFN  161 (302)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS--SCHHHHHTTSSC-GGGEEEEEECS
T ss_pred             HhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCC--CCHHHHHHhcCC-cccEEEEecCC
Confidence            7899999999999976554444445566678899988865444  334455555432 11234555554

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.79  E-value=4.6e-09  Score=97.20  Aligned_cols=102  Identities=20%  Similarity=0.291  Sum_probs=80.5

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------CcccccCHHHhhc-CCCEEEEeccCChhhhhcc
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SYPFYANVSGLAA-DSDVLIVCCALTEETHHMI  217 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~~~~~~l~e~l~-~aDiV~~~lp~~~~t~~~i  217 (286)
                      ++.|++|+|+|+|+||+.+|++|..+|++|+++|++.+...      +.. ..+.++++. +||+++.|.     +.++|
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~-~v~~~~ll~~~~DIvip~a-----~~~~I  243 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGAD-AVAPNAIYGVTCDIFAPCA-----LGAVL  243 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCE-ECCGGGTTTCCCSEEEECS-----CSCCB
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCE-EEChHHHhccCCcEeeccc-----hHHHh
Confidence            58999999999999999999999999999999998764322      222 335566665 899998874     56688


Q ss_pred             cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239          218 NKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       218 ~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i  254 (286)
                      +.+.++.|+ ..++++.+++.+.+++ ..+.|+++++
T Consensus       244 ~~~~~~~lg-~~iV~e~An~p~t~~e-a~~~L~~~Gi  278 (364)
T 1leh_A          244 NDFTIPQLK-AKVIAGSADNQLKDPR-HGKYLHELGI  278 (364)
T ss_dssp             STTHHHHCC-CSEECCSCSCCBSSHH-HHHHHHHHTC
T ss_pred             CHHHHHhCC-CcEEEeCCCCCcccHH-HHHHHHhCCC
Confidence            888888884 4688999999987755 5577777766

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.79  E-value=6.1e-09  Score=98.62  Aligned_cols=102  Identities=15%  Similarity=0.184  Sum_probs=78.1

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------------------------C-cccccCHHHhhcCCCEE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------------------------S-YPFYANVSGLAADSDVL  203 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------------------------~-~~~~~~l~e~l~~aDiV  203 (286)
                      ++|+|||+|.||..+|..|...|++|+++|+++++..                        + .....++++++++||+|
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv   80 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence            4899999999999999999999999999998764311                        1 22345777889999999


Q ss_pred             EEeccCChh---------hhhcccHHHHhcCCC---CcEEEEcCCCcccC-HHHHHHHHHh
Q 043239          204 IVCCALTEE---------THHMINKDVMTALGK---EGVIINVGRGALID-EKELVHFLVR  251 (286)
Q Consensus       204 ~~~lp~~~~---------t~~~i~~~~l~~mk~---g~ilvn~srg~~vd-~~al~~al~~  251 (286)
                      ++|+|....         ....+ ++..+.+++   +.++|+.|+..+-. .+.+.+.+.+
T Consensus        81 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~  140 (436)
T 1mv8_A           81 FICVGTPSKKNGDLDLGYIETVC-REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (436)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH-HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             EEEcCCCcccCCCcchHHHHHHH-HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence            999986543         33333 455666888   99999998777655 6667777766

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.78  E-value=8.6e-09  Score=90.38  Aligned_cols=99  Identities=18%  Similarity=0.369  Sum_probs=71.8

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCC----CEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFG----CSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMT  223 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g----~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~  223 (286)
                      .++|+|||+|.||+.+|+.|...|    ++|.+|+|+.+. .+.....+..++++++|+|++|+|. .....++. +..+
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-~g~~~~~~~~~~~~~~D~vi~~v~~-~~~~~v~~-~l~~   80 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-TTLNYMSSNEELARHCDIIVCAVKP-DIAGSVLN-NIKP   80 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-SSSEECSCHHHHHHHCSEEEECSCT-TTHHHHHH-HSGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-CceEEeCCHHHHHhcCCEEEEEeCH-HHHHHHHH-HHHH
Confidence            468999999999999999999888    689999998776 4444556888999999999999994 45555543 3445


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          224 ALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       224 ~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      .++ +.++|....|  ++.+.+.+.+..+
T Consensus        81 ~l~-~~~vv~~~~g--i~~~~l~~~~~~~  106 (262)
T 2rcy_A           81 YLS-SKLLISICGG--LNIGKLEEMVGSE  106 (262)
T ss_dssp             GCT-TCEEEECCSS--CCHHHHHHHHCTT
T ss_pred             hcC-CCEEEEECCC--CCHHHHHHHhCCC
Confidence            564 4555555444  2334666666553

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.77  E-value=6.9e-09  Score=92.64  Aligned_cols=100  Identities=13%  Similarity=0.194  Sum_probs=77.5

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCC---EEEEECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCChhhhhccc
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGC---SIAYTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALTEETHHMIN  218 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~---~V~~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~  218 (286)
                      .++|||||+|+||+.+++.|...|+   +|.+|+|+.++..      +.....+..+++++||+|++++|. .....++ 
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p-~~~~~vl-   80 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKP-HQIKMVC-   80 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCG-GGHHHHH-
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCH-HHHHHHH-
Confidence            4689999999999999999999998   8999999876422      444456888999999999999984 4445554 


Q ss_pred             HHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239          219 KDVMTA-LGKEGVIINVGRGALIDEKELVHFLVR  251 (286)
Q Consensus       219 ~~~l~~-mk~g~ilvn~srg~~vd~~al~~al~~  251 (286)
                      ++..+. ++++.++|+++-|-  ..+.+.+.+..
T Consensus        81 ~~l~~~~l~~~~iiiS~~agi--~~~~l~~~l~~  112 (280)
T 3tri_A           81 EELKDILSETKILVISLAVGV--TTPLIEKWLGK  112 (280)
T ss_dssp             HHHHHHHHTTTCEEEECCTTC--CHHHHHHHHTC
T ss_pred             HHHHhhccCCCeEEEEecCCC--CHHHHHHHcCC
Confidence            345555 78888999887664  35677777765

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.76  E-value=3e-09  Score=91.23  Aligned_cols=90  Identities=19%  Similarity=0.278  Sum_probs=68.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      .+++|+|||+|.||+.+++.|...|++|.+++|+.+...     +... .++.++++++|+|++++|. .....++.   
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~-~~~~~~~~~~DvVi~av~~-~~~~~v~~---  101 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQV-TFQEEAVSSPEVIFVAVFR-EHYSSLCS---  101 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEE-EEHHHHTTSCSEEEECSCG-GGSGGGGG---
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCce-ecHHHHHhCCCEEEECCCh-HHHHHHHH---
Confidence            457899999999999999999999999999999765321     2222 3788889999999999994 44555553   


Q ss_pred             HhcCCCCcEEEEcCCCcccC
Q 043239          222 MTALGKEGVIINVGRGALID  241 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~vd  241 (286)
                      +..+.++.++||+++|...+
T Consensus       102 l~~~~~~~~vv~~s~g~~~~  121 (215)
T 2vns_A          102 LSDQLAGKILVDVSNPTEQE  121 (215)
T ss_dssp             GHHHHTTCEEEECCCCCHHH
T ss_pred             HHHhcCCCEEEEeCCCcccc
Confidence            32233789999999997554

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.76  E-value=7.3e-09  Score=90.85  Aligned_cols=96  Identities=19%  Similarity=0.311  Sum_probs=73.7

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM  222 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l  222 (286)
                      ++|+|||+|.||+.+++.|...|++|.+|+|+.++..      +.....+++++++++|+|++|+| .....     +.+
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~~-----~v~   77 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFE-----TVL   77 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHH-----HHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhHH-----HHH
Confidence            5899999999999999999999999999999865421      34445688899999999999998 33333     445


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          223 TALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       223 ~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      ..+++|.++|+++.|--  .+.+.+.+..+
T Consensus        78 ~~l~~~~~vv~~~~~~~--~~~l~~~~~~~  105 (259)
T 2ahr_A           78 KPLHFKQPIISMAAGIS--LQRLATFVGQD  105 (259)
T ss_dssp             TTSCCCSCEEECCTTCC--HHHHHHHHCTT
T ss_pred             HHhccCCEEEEeCCCCC--HHHHHHhcCCC
Confidence            55678999999976643  34566666543

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.75  E-value=5.1e-09  Score=94.92  Aligned_cols=105  Identities=17%  Similarity=0.135  Sum_probs=78.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccC-CC-EEEEECCCCCCCC------C--cccccCHHHhhcCCCEEEEeccCChhhhhc
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPF-GC-SIAYTSRKKKPGV------S--YPFYANVSGLAADSDVLIVCCALTEETHHM  216 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~-g~-~V~~~~r~~~~~~------~--~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~  216 (286)
                      ..++|||||+|.||+.+++.|... |+ +|.+|+|+.++..      +  .....+++++++++|+|++|+|.   ...+
T Consensus       134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~---~~~v  210 (312)
T 2i99_A          134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLA---TEPI  210 (312)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCC---SSCC
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCC---CCcc
Confidence            456999999999999999998764 77 8999999875432      2  33467899999999999999985   3556


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEee
Q 043239          217 INKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLM  260 (286)
Q Consensus       217 i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lD  260 (286)
                      +..   +.+++|.++++++....-. ..+.+.+.+...  ..+|
T Consensus       211 ~~~---~~l~~g~~vi~~g~~~p~~-~el~~~~~~~g~--~~vD  248 (312)
T 2i99_A          211 LFG---EWVKPGAHINAVGASRPDW-RELDDELMKEAV--LYVD  248 (312)
T ss_dssp             BCG---GGSCTTCEEEECCCCSTTC-CSBCHHHHHHSE--EEES
T ss_pred             cCH---HHcCCCcEEEeCCCCCCCc-eeccHHHHhcCE--EEEC
Confidence            654   5789999999998776533 445544444333  3566

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.72  E-value=5.2e-08  Score=90.04  Aligned_cols=218  Identities=14%  Similarity=0.113  Sum_probs=129.3

Q ss_pred             hhcccCCCCCCchhhhC-CCcEEecCCCCC----CCchHHH----------HhccCCceEEEEeCCCCCCHHHhccCCCc
Q 043239            7 DAYRRGAPGCFNPPLSE-RFTLLDPLLHSA----DSTHSFL----------SRHASSVRAILCLGPSPLTSDTLSLLPAL   71 (286)
Q Consensus         7 ~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~----~~~~~~~----------~~~~~~~d~i~~~~~~~~~~~~l~~~~~L   71 (286)
                      .-+|-...|...++|.+ .+++. +....+    -+-+++.          .+.+ ++|+|+.. ..+...+.....+++
T Consensus        12 ~E~Rv~~~P~~v~~l~~~g~~v~-ve~~ag~~~~f~d~~y~~aga~i~~~~~~~~-~ad~i~~v-ksP~~~~~~~~~~g~   88 (361)
T 1pjc_A           12 QEFRVGLSPSSVRTLVEAGHTVF-IETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKV-KEPLPAEYDLMQKDQ   88 (361)
T ss_dssp             TCCCCSCCHHHHHHHHTTTCEEE-EETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECS-SCCCGGGGGGCCTTC
T ss_pred             CCCeeCcCHHHHHHHHhCCCEEE-EeCCCCccCCCCHHHHHHCCCEEECCHHHHh-cCCeEEEE-CCCCHHHHHhhcCCC
Confidence            34555667777777765 45553 322222    1112222          1223 68887752 334433333334566


Q ss_pred             cEEEEcCCCCCcCChhHHhhcCeEEEec---CCCC-----CcChHHHHH--HHHHHHHhcchHHHHHHHcCCCCCCCCC-
Q 043239           72 EIVVGSTAGIDHVDLQECRRRGILVTNA---GNAF-----SEDGADYVV--GLLVDVLRRVSSIDRFVRNGLWPDHGAY-  140 (286)
Q Consensus        72 k~i~~~~~G~d~id~~~~~~~gI~v~n~---~~~~-----~~~vAE~~l--~~~L~~~R~~~~~~~~~~~~~w~~~~~~-  140 (286)
                      ..+......++.-.++.+.++|+...|.   |.-.     -.++++.+-  +.+++. .++...    ..|.    +.. 
T Consensus        89 ~~~~y~~~~~~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~gA-~nt~~~----~~g~----G~~l  159 (361)
T 1pjc_A           89 LLFTYLHLAAARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFGA-RFLERQ----QGGR----GVLL  159 (361)
T ss_dssp             EEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHHH-HHTSGG----GTSC----CCCT
T ss_pred             EEEEEeccccCHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHHH-HHHhhc----cCCC----ceec
Confidence            5665555555543456778889888753   4321     133444333  344433 222211    1111    000 


Q ss_pred             CCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc-------ccCHHHhhcCCCEEEEecc
Q 043239          141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF-------YANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       141 ~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~-------~~~l~e~l~~aDiV~~~lp  208 (286)
                      ..-..+.+++|+|+|.|.+|+.+++.++.+|++|++++|+.++..     +...       ..++.+.+.++|+|+.+++
T Consensus       160 ~~l~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~  239 (361)
T 1pjc_A          160 GGVPGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVL  239 (361)
T ss_dssp             TCBTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCC
T ss_pred             cCCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCC
Confidence            001247789999999999999999999999999999999865422     1111       1245667789999999986


Q ss_pred             CCh-hhhhcccHHHHhcCCCCcEEEEcCC
Q 043239          209 LTE-ETHHMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       209 ~~~-~t~~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                      ... ....++.++.++.|+++++++|++-
T Consensus       240 ~~~~~~~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          240 VPGRRAPILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             CTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             cCCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence            532 2344567888999999999999973

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.71  E-value=9.1e-09  Score=83.06  Aligned_cols=104  Identities=16%  Similarity=0.232  Sum_probs=81.6

Q ss_pred             CCEEEEEcC----ChHHHHHHHHhccCCCEEEEECCCC--CCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          148 GKRVGIVGL----GSIGSEVAKRLVPFGCSIAYTSRKK--KPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       148 g~~vgIiG~----G~iG~~~A~~l~~~g~~V~~~~r~~--~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      -++|+|||+    |.||..+++.|...|++|+.++++.  +...+...+.+++++....|++++++| .+....++. +.
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~sl~el~~~~Dlvii~vp-~~~v~~v~~-~~   90 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVPEKVDMVDVFRN-SEAAWGVAQ-EA   90 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTCSSCCSEEECCSC-STHHHHHHH-HH
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccccCCeeccCCHHHcCCCCCEEEEEeC-HHHHHHHHH-HH
Confidence            468999999    8999999999999999999998876  444566667889998889999999999 466666664 34


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEE
Q 043239          222 MTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELV  258 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~  258 (286)
                      .+ ...+.++++.+.-    ++++.+++++.+++..+
T Consensus        91 ~~-~g~~~i~i~~~~~----~~~l~~~a~~~Gi~~ig  122 (145)
T 2duw_A           91 IA-IGAKTLWLQLGVI----NEQAAVLAREAGLSVVM  122 (145)
T ss_dssp             HH-HTCCEEECCTTCC----CHHHHHHHHTTTCEEEC
T ss_pred             HH-cCCCEEEEcCChH----HHHHHHHHHHcCCEEEc
Confidence            43 5567788876422    78889999988887543

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=98.68  E-value=8e-09  Score=90.64  Aligned_cols=95  Identities=21%  Similarity=0.270  Sum_probs=70.0

Q ss_pred             CEEEEEcCChHHHHHHHHhccCC-CEEEEECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFG-CSIAYTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g-~~V~~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      ++|+|||+|.||+.+|+.|...| ++|.+|+|+.++..      +.....++.+++ ++|+|++++| ......++    
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~----   74 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAAC----   74 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHH----
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHH----
Confidence            48999999999999999999889 99999999865421      333345677778 9999999999 54544443    


Q ss_pred             HhcCC-CCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          222 MTALG-KEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       222 l~~mk-~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                       ..+. ++.++|+++.|--  .+.+.+.+..+
T Consensus        75 -~~l~~~~~ivv~~~~g~~--~~~l~~~~~~~  103 (263)
T 1yqg_A           75 -KNIRTNGALVLSVAAGLS--VGTLSRYLGGT  103 (263)
T ss_dssp             -TTCCCTTCEEEECCTTCC--HHHHHHHTTSC
T ss_pred             -HHhccCCCEEEEecCCCC--HHHHHHHcCCC
Confidence             2332 2889999965533  36677776653

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.67  E-value=2.9e-08  Score=87.92  Aligned_cols=87  Identities=21%  Similarity=0.260  Sum_probs=66.5

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----C--cc-----cccCHHHhhcCCCEEEEeccCChhhhhc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----S--YP-----FYANVSGLAADSDVLIVCCALTEETHHM  216 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~--~~-----~~~~l~e~l~~aDiV~~~lp~~~~t~~~  216 (286)
                      ++|+|||+|.||..+|..|...|++|++|+|+.+...     +  ..     ...+..+.++++|+|++++|.. .+..+
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~-~~~~v   79 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAW-QVSDA   79 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGG-GHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHH-hHHHH
Confidence            4799999999999999999999999999999876432     1  00     0122346778999999999964 45555


Q ss_pred             ccHHHHhcCCCCcEEEEcCCC
Q 043239          217 INKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       217 i~~~~l~~mk~g~ilvn~srg  237 (286)
                      + ++..+.+++++++|++..|
T Consensus        80 ~-~~l~~~l~~~~~vv~~~~g   99 (291)
T 1ks9_A           80 V-KSLASTLPVTTPILLIHNG   99 (291)
T ss_dssp             H-HHHHTTSCTTSCEEEECSS
T ss_pred             H-HHHHhhCCCCCEEEEecCC
Confidence            4 4566778899999998765

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.66  E-value=6e-08  Score=89.53  Aligned_cols=92  Identities=15%  Similarity=0.157  Sum_probs=72.7

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-------------C------cccccCHHHhhcCCCEEEEecc
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------------S------YPFYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------------~------~~~~~~l~e~l~~aDiV~~~lp  208 (286)
                      .++|+|||.|.||..+|..|...|++|.+|+|+++...             +      .....++.++++++|+|++++|
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaVp  108 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVP  108 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECCC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECCC
Confidence            46899999999999999999999999999999754211             0      1224688899999999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccC
Q 043239          209 LTEETHHMINKDVMTALGKEGVIINVGRGALID  241 (286)
Q Consensus       209 ~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd  241 (286)
                      . ...+.++ ++..+.++++.++|+++.|-..+
T Consensus       109 ~-~~~~~vl-~~i~~~l~~~~ivvs~~kGi~~~  139 (356)
T 3k96_A          109 S-FAFHEVI-TRMKPLIDAKTRIAWGTKGLAKG  139 (356)
T ss_dssp             H-HHHHHHH-HHHGGGCCTTCEEEECCCSCBTT
T ss_pred             H-HHHHHHH-HHHHHhcCCCCEEEEEeCCCCcC
Confidence            4 4555554 45677789999999998875544

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.66  E-value=7.4e-08  Score=83.57  Aligned_cols=99  Identities=18%  Similarity=0.211  Sum_probs=75.4

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEE-EEECCCCCCCCCcccccCHHHhh-cCCCEEEEeccCChhhhhcccHHHHhcCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSI-AYTSRKKKPGVSYPFYANVSGLA-ADSDVLIVCCALTEETHHMINKDVMTALG  226 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V-~~~~r~~~~~~~~~~~~~l~e~l-~~aDiV~~~lp~~~~t~~~i~~~~l~~mk  226 (286)
                      ++|||||+|.||+.+++.+...|+++ .++|++.+ ...  .+.++++++ .++|+|++|+|.... .    +.....++
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~-~~~--~~~~~~~l~~~~~DvVv~~~~~~~~-~----~~~~~~l~   72 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGE-HEK--MVRGIDEFLQREMDVAVEAASQQAV-K----DYAEKILK   72 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-CTT--EESSHHHHTTSCCSEEEECSCHHHH-H----HHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcc-hhh--hcCCHHHHhcCCCCEEEECCCHHHH-H----HHHHHHHH
Confidence            47999999999999999998889987 68998753 222  567899999 699999999984322 2    22344567


Q ss_pred             CCcEEEEcCCCcccCH---HHHHHHHHhCCee
Q 043239          227 KEGVIINVGRGALIDE---KELVHFLVRGSLV  255 (286)
Q Consensus       227 ~g~ilvn~srg~~vd~---~al~~al~~~~i~  255 (286)
                      .|..+|+.+.+..-+.   +.|.++.++.+..
T Consensus        73 ~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~  104 (236)
T 2dc1_A           73 AGIDLIVLSTGAFADRDFLSRVREVCRKTGRR  104 (236)
T ss_dssp             TTCEEEESCGGGGGSHHHHHHHHHHHHHHCCC
T ss_pred             CCCcEEEECcccCChHHHHHHHHHHHHhcCCe
Confidence            8999999988887666   6777777765543

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.66  E-value=3.1e-08  Score=90.55  Aligned_cols=101  Identities=18%  Similarity=0.204  Sum_probs=75.3

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------Cc--------------ccccCHHHhhcCCCEEEEecc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SY--------------PFYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~--------------~~~~~l~e~l~~aDiV~~~lp  208 (286)
                      ++|+|||+|.||..+|..|...|++|.+++|+++...      +.              ....+++++++++|+|++++|
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   84 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP   84 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence            6899999999999999999999999999999754311      10              134578888899999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          209 LTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       209 ~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      ... ...++ ++..+.+++++++|++ .|.......+.+.+.+.
T Consensus        85 ~~~-~~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~~  125 (359)
T 1bg6_A           85 AIH-HASIA-ANIASYISEGQLIILN-PGATGGALEFRKILREN  125 (359)
T ss_dssp             GGG-HHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHHT
T ss_pred             chH-HHHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHhc
Confidence            554 34444 5567778999999999 44223444456666553

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.66  E-value=3.1e-08  Score=94.88  Aligned_cols=103  Identities=13%  Similarity=0.156  Sum_probs=75.9

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------------C-------------cccccCHHHhhcCCCE
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------------S-------------YPFYANVSGLAADSDV  202 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------------~-------------~~~~~~l~e~l~~aDi  202 (286)
                      .++|+|||+|.||..+|..|...|++|++||++.++..            +             .....++++.+++||+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDv   87 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDV   87 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSE
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCE
Confidence            46999999999999999999999999999998754311            1             1123467788899999


Q ss_pred             EEEeccCC---------hhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239          203 LIVCCALT---------EETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVR  251 (286)
Q Consensus       203 V~~~lp~~---------~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~  251 (286)
                      |++|+|..         ...+..+ +...+.++++.++|+.|.-.+-..+.+.+.+.+
T Consensus        88 viiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~  144 (478)
T 2y0c_A           88 QFIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAE  144 (478)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHH
Confidence            99999853         3344433 456677999999999985444445555555543

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.65  E-value=4.4e-08  Score=93.68  Aligned_cols=99  Identities=12%  Similarity=0.105  Sum_probs=75.7

Q ss_pred             CEEEEEcCChHHHHHHHHhccC-CC-EEEEECCCCC----CCC----C---c--------------------ccccCHHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF-GC-SIAYTSRKKK----PGV----S---Y--------------------PFYANVSG  195 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~-g~-~V~~~~r~~~----~~~----~---~--------------------~~~~~l~e  195 (286)
                      ++|+|||+|.||..+|..|... |+ +|++||++.+    +..    +   .                    ....+ .+
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd-~e   97 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD-FS   97 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-GG
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-HH
Confidence            5899999999999999999999 99 9999999887    210    0   0                    11233 57


Q ss_pred             hhcCCCEEEEeccCCh--------hhhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 043239          196 LAADSDVLIVCCALTE--------ETHHMI--NKDVMTALGKEGVIINVGRGALIDEKELVHF  248 (286)
Q Consensus       196 ~l~~aDiV~~~lp~~~--------~t~~~i--~~~~l~~mk~g~ilvn~srg~~vd~~al~~a  248 (286)
                      .+++||+|++|+|...        +...+.  .+...+.+++|.++|+.|+-.+-..+.+.+.
T Consensus        98 a~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~  160 (478)
T 3g79_A           98 RISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQ  160 (478)
T ss_dssp             GGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHH
T ss_pred             HHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHH
Confidence            7899999999999642        222222  2457788999999999998888777777753

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.64  E-value=4.3e-08  Score=89.72  Aligned_cols=90  Identities=21%  Similarity=0.185  Sum_probs=69.9

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCC-------CEEEEECCCCC-----CCC-------------------CcccccCHHHh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFG-------CSIAYTSRKKK-----PGV-------------------SYPFYANVSGL  196 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g-------~~V~~~~r~~~-----~~~-------------------~~~~~~~l~e~  196 (286)
                      .++|+|||+|.||..+|..|...|       ++|.+|+|+.+     ...                   ......+++++
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA   87 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence            368999999999999999999888       89999999876     110                   01223578888


Q ss_pred             hcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 043239          197 AADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGAL  239 (286)
Q Consensus       197 l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~  239 (286)
                      +++||+|++++|. .....++ ++..+.+++++++|+++.|-.
T Consensus        88 ~~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           88 AEDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HTTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBC
T ss_pred             HcCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccC
Confidence            9999999999994 4555554 355667889999999988754

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.63  E-value=4.2e-08  Score=91.98  Aligned_cols=101  Identities=10%  Similarity=0.103  Sum_probs=76.8

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cc------------------ccccCHHHhhcCCCEEEE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SY------------------PFYANVSGLAADSDVLIV  205 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~------------------~~~~~l~e~l~~aDiV~~  205 (286)
                      ++|+|||+|.||..+|..|.. |++|++++++.++..     +.                  ....++.+.+++||+|++
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii   79 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence            489999999999999999999 999999999764321     11                  223467788899999999


Q ss_pred             eccCCh----------hhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          206 CCALTE----------ETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       206 ~lp~~~----------~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      |+|...          .....+ +...+ ++++.++|+.|.-.+-..+.+.+.+.+.
T Consensus        80 avpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~  134 (402)
T 1dlj_A           80 ATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD  134 (402)
T ss_dssp             CCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS
T ss_pred             ecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC
Confidence            999653          234333 34556 8999999998877776777787776554

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.62  E-value=2.5e-08  Score=92.39  Aligned_cols=87  Identities=14%  Similarity=0.208  Sum_probs=68.1

Q ss_pred             CEEEEEcCChHHHHHHHHhccCC-------CEEEEECCCCC-----CCC-------------------CcccccCHHHhh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFG-------CSIAYTSRKKK-----PGV-------------------SYPFYANVSGLA  197 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g-------~~V~~~~r~~~-----~~~-------------------~~~~~~~l~e~l  197 (286)
                      ++|+|||+|.||..+|..|...|       ++|++|+|+.+     ...                   +.....++.+++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~  101 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI  101 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence            47999999999999999998888       89999999876     210                   112235677888


Q ss_pred             cCCCEEEEeccCChhhhhcccHHHHh----cCCCCcEEEEcCCC
Q 043239          198 ADSDVLIVCCALTEETHHMINKDVMT----ALGKEGVIINVGRG  237 (286)
Q Consensus       198 ~~aDiV~~~lp~~~~t~~~i~~~~l~----~mk~g~ilvn~srg  237 (286)
                      +++|+|++++|. .....++ ++..+    .+++++++|+++.|
T Consensus       102 ~~aDvVilav~~-~~~~~vl-~~i~~~~~~~l~~~~ivvs~~~G  143 (375)
T 1yj8_A          102 NDADLLIFIVPC-QYLESVL-ASIKESESIKIASHAKAISLTKG  143 (375)
T ss_dssp             TTCSEEEECCCH-HHHHHHH-HHHTC---CCCCTTCEEEECCCS
T ss_pred             cCCCEEEEcCCH-HHHHHHH-HHHhhhhhccCCCCCEEEEeCCc
Confidence            999999999993 5555554 34555    68889999999887

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.62  E-value=3.4e-08  Score=94.67  Aligned_cols=104  Identities=10%  Similarity=0.188  Sum_probs=78.2

Q ss_pred             CEEEEEcCChHHHHHHHHhccC--CCEEEEECCCCCCCC------------C------------cccccCHHHhhcCCCE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF--GCSIAYTSRKKKPGV------------S------------YPFYANVSGLAADSDV  202 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~--g~~V~~~~r~~~~~~------------~------------~~~~~~l~e~l~~aDi  202 (286)
                      ++|+|||+|.||..+|..|...  |++|++||++.++..            +            .....++.+.+++||+
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv   89 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL   89 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE
Confidence            5899999999999999999887  789999998754311            0            1123466788899999


Q ss_pred             EEEeccCChh--------------hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh-CC
Q 043239          203 LIVCCALTEE--------------THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVR-GS  253 (286)
Q Consensus       203 V~~~lp~~~~--------------t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~-~~  253 (286)
                      |++|+|....              .... -+...+.+++|.++|+.|.-.+-..+.+.+.+.+ .+
T Consensus        90 vii~Vptp~~~~g~~~~~~~dl~~v~~~-~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~  154 (481)
T 2o3j_A           90 IFISVNTPTKMYGRGKGMAPDLKYVESV-SRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQK  154 (481)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHH-HHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC
T ss_pred             EEEecCCccccccccccCCCcHHHHHHH-HHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhC
Confidence            9999985421              2222 2456778999999999987777667778888877 44

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.61  E-value=3.3e-08  Score=84.92  Aligned_cols=87  Identities=18%  Similarity=0.226  Sum_probs=63.1

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEE-ECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCChhhhhcccHH
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAY-TSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALTEETHHMINKD  220 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~-~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~  220 (286)
                      -++|+|||+|.||..+|+.|...|++|.+ ++|+.++..      +.....+..+.++++|+|++++|. .....++. +
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~-~~~~~v~~-~  100 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPY-DSIADIVT-Q  100 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCG-GGHHHHHT-T
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCCh-HHHHHHHH-H
Confidence            36899999999999999999999999988 999876543      222234555668999999999983 23333322 1


Q ss_pred             HHhcCCCCcEEEEcCCCc
Q 043239          221 VMTALGKEGVIINVGRGA  238 (286)
Q Consensus       221 ~l~~mk~g~ilvn~srg~  238 (286)
                      ...  .++.++|+++.|-
T Consensus       101 l~~--~~~~ivi~~~~g~  116 (220)
T 4huj_A          101 VSD--WGGQIVVDASNAI  116 (220)
T ss_dssp             CSC--CTTCEEEECCCCB
T ss_pred             hhc--cCCCEEEEcCCCC
Confidence            112  2578999998664

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.61  E-value=3e-08  Score=89.87  Aligned_cols=100  Identities=13%  Similarity=0.131  Sum_probs=72.8

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECC--CCCCC-----CCc-----------cccc--CHHHhhcCCCEEEEecc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSR--KKKPG-----VSY-----------PFYA--NVSGLAADSDVLIVCCA  208 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r--~~~~~-----~~~-----------~~~~--~l~e~l~~aDiV~~~lp  208 (286)
                      ++|+|||+|.||..+|..|...|++|++++|  +.+..     .+.           ....  ++.+.++++|+|++++|
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   80 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence            4799999999999999999998999999999  65321     111           1223  67788899999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCc---c-cCHHHHHHHHHh
Q 043239          209 LTEETHHMINKDVMTALGKEGVIINVGRGA---L-IDEKELVHFLVR  251 (286)
Q Consensus       209 ~~~~t~~~i~~~~l~~mk~g~ilvn~srg~---~-vd~~al~~al~~  251 (286)
                      .. ....++ ++..+ ++++.++|+++.|-   . -..+.+.+.+.+
T Consensus        81 ~~-~~~~v~-~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~  124 (335)
T 1txg_A           81 TD-GVLPVM-SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL  124 (335)
T ss_dssp             GG-GHHHHH-HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT
T ss_pred             hH-HHHHHH-HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH
Confidence            54 455444 34556 88999999998774   1 122445555554

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=98.60  E-value=5e-08  Score=92.17  Aligned_cols=106  Identities=17%  Similarity=0.205  Sum_probs=76.3

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----Cc--ccccCHHHh---------------hcCCCEEE
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----SY--PFYANVSGL---------------AADSDVLI  204 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----~~--~~~~~l~e~---------------l~~aDiV~  204 (286)
                      -+|.++.|||+|.||..+|.+|...|++|++||+++++..    +.  .....++|+               +++||+|+
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvi   88 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFI   88 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEE
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEE
Confidence            4688999999999999999999999999999999876432    10  011122222               45799999


Q ss_pred             EeccCChhh--------hhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239          205 VCCALTEET--------HHMI--NKDVMTALGKEGVIINVGRGALIDEKELVHFLVR  251 (286)
Q Consensus       205 ~~lp~~~~t--------~~~i--~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~  251 (286)
                      +|+|.....        ..+.  .+...+.|++|.++|+.|+-.+-..+.+.+.+.+
T Consensus        89 i~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e  145 (431)
T 3ojo_A           89 IAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIE  145 (431)
T ss_dssp             ECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHH
T ss_pred             EEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHH
Confidence            999954321        1222  2457788999999999998888888888776533

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.59  E-value=6.4e-08  Score=86.31  Aligned_cols=106  Identities=10%  Similarity=0.125  Sum_probs=76.1

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCCCc------ccccCHHHhhcCCCEEEEeccCC--hhhhh
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVSY------PFYANVSGLAADSDVLIVCCALT--EETHH  215 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~~~------~~~~~l~e~l~~aDiV~~~lp~~--~~t~~  215 (286)
                      ++.|+++.|+|.|.+|++++..|...|+ +|++++|+.++....      ....++.+.++++|+|++++|..  +....
T Consensus       114 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~  193 (277)
T 3don_A          114 GIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDS  193 (277)
T ss_dssp             TGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------CC
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcC
Confidence            4788999999999999999999999999 899999998664321      12345667788999999999864  22221


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          216 MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       216 ~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      .+.   .+.++++.+++|+..... .+ .++++.++.++.
T Consensus       194 ~l~---~~~l~~~~~V~D~vY~P~-~T-~ll~~A~~~G~~  228 (277)
T 3don_A          194 VIS---LNRLASHTLVSDIVYNPY-KT-PILIEAEQRGNP  228 (277)
T ss_dssp             SSC---CTTCCSSCEEEESCCSSS-SC-HHHHHHHHTTCC
T ss_pred             CCC---HHHcCCCCEEEEecCCCC-CC-HHHHHHHHCcCE
Confidence            232   355789999999987643 34 466666665543

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.59  E-value=1e-08  Score=94.50  Aligned_cols=89  Identities=10%  Similarity=0.159  Sum_probs=68.5

Q ss_pred             EEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-------------------CcccccCHHHhhcCCCEEEEeccCC
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------------------SYPFYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------------------~~~~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      +|+|||+|.||..+|..|...|++|.+|+|+.+...                   +.....++.++++++|+|++++|. 
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~-   95 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT-   95 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH-
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh-
Confidence            899999999999999999999999999999754211                   112235788889999999999994 


Q ss_pred             hhhhhcccHH---HHhcCCC-CcEEEEcCCCcc
Q 043239          211 EETHHMINKD---VMTALGK-EGVIINVGRGAL  239 (286)
Q Consensus       211 ~~t~~~i~~~---~l~~mk~-g~ilvn~srg~~  239 (286)
                      .....++...   ..+.+++ +.++|+++.|-.
T Consensus        96 ~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~  128 (366)
T 1evy_A           96 QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIE  128 (366)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCC
T ss_pred             HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCC
Confidence            5555555321   5556778 899999987743

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.58  E-value=1.7e-07  Score=83.17  Aligned_cols=81  Identities=16%  Similarity=0.382  Sum_probs=68.0

Q ss_pred             cccCCCCEEEEEcCChH-HHHHHHHhccC--CCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239          143 GSTLGGKRVGIVGLGSI-GSEVAKRLVPF--GCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~i-G~~~A~~l~~~--g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      +.+++|+++.|||.|.| |+.+|+.|...  |.+|++..++.         .++.+.+++||+|+.+++.    .+++.+
T Consensus       153 ~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t---------~~L~~~~~~ADIVI~Avg~----p~~I~~  219 (281)
T 2c2x_A          153 DISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT---------RDLPALTRQADIVVAAVGV----AHLLTA  219 (281)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC---------SCHHHHHTTCSEEEECSCC----TTCBCG
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch---------hHHHHHHhhCCEEEECCCC----CcccCH
Confidence            34689999999999985 99999999999  89999887543         5899999999999999873    336777


Q ss_pred             HHHhcCCCCcEEEEcCCCcc
Q 043239          220 DVMTALGKEGVIINVGRGAL  239 (286)
Q Consensus       220 ~~l~~mk~g~ilvn~srg~~  239 (286)
                      ++   +|+|+++||+|.-.+
T Consensus       220 ~~---vk~GavVIDVgi~r~  236 (281)
T 2c2x_A          220 DM---VRPGAAVIDVGVSRT  236 (281)
T ss_dssp             GG---SCTTCEEEECCEEEE
T ss_pred             HH---cCCCcEEEEccCCCC
Confidence            66   589999999986654

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.56  E-value=1e-07  Score=86.43  Aligned_cols=91  Identities=21%  Similarity=0.240  Sum_probs=70.5

Q ss_pred             CcccCCCCEEEEEcCChH-HHHHHHHhccCCCEEEEECCCCCC----CC----Cccc------c--cCHHHhhcCCCEEE
Q 043239          142 LGSTLGGKRVGIVGLGSI-GSEVAKRLVPFGCSIAYTSRKKKP----GV----SYPF------Y--ANVSGLAADSDVLI  204 (286)
Q Consensus       142 ~~~~l~g~~vgIiG~G~i-G~~~A~~l~~~g~~V~~~~r~~~~----~~----~~~~------~--~~l~e~l~~aDiV~  204 (286)
                      .+.++.|+++.|||.|.| |+.+|+.|...|.+|++.+|+...    ..    ....      .  .++.+.+++||+|+
T Consensus       171 ~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVI  250 (320)
T 1edz_A          171 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVI  250 (320)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred             cCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEE
Confidence            466799999999999986 999999999999999999887221    11    1111      1  57889999999999


Q ss_pred             EeccCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 043239          205 VCCALTEETHHMINKDVMTALGKEGVIINVGRGA  238 (286)
Q Consensus       205 ~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~  238 (286)
                      .+++.   ...+|..+.   +|+|+++||+|...
T Consensus       251 sAtg~---p~~vI~~e~---vk~GavVIDVgi~r  278 (320)
T 1edz_A          251 TGVPS---ENYKFPTEY---IKEGAVCINFACTK  278 (320)
T ss_dssp             ECCCC---TTCCBCTTT---SCTTEEEEECSSSC
T ss_pred             ECCCC---CcceeCHHH---cCCCeEEEEcCCCc
Confidence            99873   233477666   58999999998654

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=98.56  E-value=5.1e-08  Score=84.67  Aligned_cols=70  Identities=16%  Similarity=0.213  Sum_probs=58.3

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGK  227 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~  227 (286)
                      .++|+|||+|.||.++|+.|+..|++|.+|++.             ++ +++||  ++++|.. ....++ ++..+.+++
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~-------------~~-~~~aD--ilavP~~-ai~~vl-~~l~~~l~~   67 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP-------------ED-IRDFE--LVVIDAH-GVEGYV-EKLSAFARR   67 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG-------------GG-GGGCS--EEEECSS-CHHHHH-HHHHTTCCT
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH-------------HH-hccCC--EEEEcHH-HHHHHH-HHHHHhcCC
Confidence            468999999999999999999999999999983             22 57899  7889975 556555 456677899


Q ss_pred             CcEEEEcC
Q 043239          228 EGVIINVG  235 (286)
Q Consensus       228 g~ilvn~s  235 (286)
                      |++++|++
T Consensus        68 g~ivvd~s   75 (232)
T 3dfu_A           68 GQMFLHTS   75 (232)
T ss_dssp             TCEEEECC
T ss_pred             CCEEEEEC
Confidence            99999985

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.56  E-value=1.4e-07  Score=84.05  Aligned_cols=80  Identities=23%  Similarity=0.369  Sum_probs=67.4

Q ss_pred             cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.+++|+++.|||.|. +|+.+|+.|...|++|++.++..         .++.+.+++||+|+.+++.    .+++..++
T Consensus       154 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------~~L~~~~~~ADIVI~Avg~----p~lI~~~~  220 (288)
T 1b0a_A          154 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT---------KNLRHHVENADLLIVAVGK----PGFIPGDW  220 (288)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC---------SCHHHHHHHCSEEEECSCC----TTCBCTTT
T ss_pred             CCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc---------hhHHHHhccCCEEEECCCC----cCcCCHHH
Confidence            3468999999999997 59999999999999999887532         5799999999999999883    33677666


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 043239          222 MTALGKEGVIINVGRGA  238 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~  238 (286)
                         +|+|+++||+|.-.
T Consensus       221 ---vk~GavVIDVgi~r  234 (288)
T 1b0a_A          221 ---IKEGAIVIDVGINR  234 (288)
T ss_dssp             ---SCTTCEEEECCCEE
T ss_pred             ---cCCCcEEEEccCCc
Confidence               58999999999654

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.56  E-value=2.7e-08  Score=95.44  Aligned_cols=113  Identities=11%  Similarity=0.114  Sum_probs=81.7

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------------Cc-------------ccccCHHHhhcC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------SY-------------PFYANVSGLAAD  199 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~~-------------~~~~~l~e~l~~  199 (286)
                      ++|||||+|.||..+|..+...|++|++||++.+...                +.             ....+++ .+++
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~   84 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALAA   84 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-HhcC
Confidence            5899999999999999999999999999999875321                10             1234554 6889


Q ss_pred             CCEEEEeccCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCC
Q 043239          200 SDVLIVCCALTEETHHMINKDVMTALGKEGVII-NVGRGALIDEKELVHFLVRGSLVELVLMCLRTSL  266 (286)
Q Consensus       200 aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilv-n~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~  266 (286)
                      ||+|+.++|...+....+-++..+.++++++|+ |+|.-+   ...+.+.+. ..-+.+++..|.+.+
T Consensus        85 aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~---i~~ia~~~~-~p~~~ig~hf~~Pa~  148 (483)
T 3mog_A           85 ADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS---ITAIAAEIK-NPERVAGLHFFNPAP  148 (483)
T ss_dssp             CSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSC---HHHHTTTSS-SGGGEEEEEECSSTT
T ss_pred             CCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCC---HHHHHHHcc-CccceEEeeecChhh
Confidence            999999999876665445566777899999984 666544   345555553 234556777776443

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.56  E-value=1.8e-07  Score=83.29  Aligned_cols=80  Identities=23%  Similarity=0.385  Sum_probs=67.2

Q ss_pred             cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.+++|+++.|||.|. +|+.+|+.|...|++|++..++         ..++++.+++||+|+.+++.    .+++..+.
T Consensus       156 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~---------t~~L~~~~~~ADIVI~Avg~----p~~I~~~~  222 (285)
T 3l07_A          156 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF---------TTDLKSHTTKADILIVAVGK----PNFITADM  222 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------CSSHHHHHTTCSEEEECCCC----TTCBCGGG
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC---------chhHHHhcccCCEEEECCCC----CCCCCHHH
Confidence            3468999999999988 6999999999999999988764         24789999999999999873    44576654


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 043239          222 MTALGKEGVIINVGRGA  238 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~  238 (286)
                         +|+|+++||++.-.
T Consensus       223 ---vk~GavVIDvgi~~  236 (285)
T 3l07_A          223 ---VKEGAVVIDVGINH  236 (285)
T ss_dssp             ---SCTTCEEEECCCEE
T ss_pred             ---cCCCcEEEEecccC
Confidence               59999999998544

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.55  E-value=1.9e-07  Score=83.16  Aligned_cols=80  Identities=21%  Similarity=0.388  Sum_probs=67.5

Q ss_pred             cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.+++|+++.|||.|. +|+.+|..|...|++|++..++         ..++++.+++||+|+.+++.    .+++..+.
T Consensus       155 ~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~---------t~~L~~~~~~ADIVI~Avg~----p~~I~~~~  221 (285)
T 3p2o_A          155 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK---------TKDLSLYTRQADLIIVAAGC----VNLLRSDM  221 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------CSCHHHHHTTCSEEEECSSC----TTCBCGGG
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC---------chhHHHHhhcCCEEEECCCC----CCcCCHHH
Confidence            3468999999999988 6999999999999999998764         24789999999999999873    44676655


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 043239          222 MTALGKEGVIINVGRGA  238 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~  238 (286)
                         +|+|+++||++.-.
T Consensus       222 ---vk~GavVIDVgi~~  235 (285)
T 3p2o_A          222 ---VKEGVIVVDVGINR  235 (285)
T ss_dssp             ---SCTTEEEEECCCEE
T ss_pred             ---cCCCeEEEEeccCc
Confidence               59999999998544

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.54  E-value=1.6e-07  Score=83.13  Aligned_cols=77  Identities=17%  Similarity=0.327  Sum_probs=65.8

Q ss_pred             CCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhc
Q 043239          146 LGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTA  224 (286)
Q Consensus       146 l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~  224 (286)
                      ++|+++.|||.|. +|+.+|+.|...|++|+++.+.         ..++++.+++||+|+.+++.    .+++.++.   
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~---------t~~L~~~~~~ADIVI~Avg~----p~~I~~~~---  211 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK---------TKDIGSMTRSSKIVVVAVGR----PGFLNREM---  211 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------CSCHHHHHHHSSEEEECSSC----TTCBCGGG---
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC---------cccHHHhhccCCEEEECCCC----CccccHhh---
Confidence            7899999999986 8999999999999999998763         35799999999999999874    34677655   


Q ss_pred             CCCCcEEEEcCCCc
Q 043239          225 LGKEGVIINVGRGA  238 (286)
Q Consensus       225 mk~g~ilvn~srg~  238 (286)
                      +|+|+++||++.-.
T Consensus       212 vk~GavVIDvgi~~  225 (276)
T 3ngx_A          212 VTPGSVVIDVGINY  225 (276)
T ss_dssp             CCTTCEEEECCCEE
T ss_pred             ccCCcEEEEeccCc
Confidence            59999999998543

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.54  E-value=9.8e-08  Score=85.92  Aligned_cols=106  Identities=15%  Similarity=0.194  Sum_probs=76.8

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC------Cc---cc--ccCHHHhhcCCCEEEEeccCChh
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV------SY---PF--YANVSGLAADSDVLIVCCALTEE  212 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~------~~---~~--~~~l~e~l~~aDiV~~~lp~~~~  212 (286)
                      ++.+++++|+|.|.+|++++..|...|+ +|++++|+.++..      +.   ..  ..++.+.+.++|+|++++|....
T Consensus       138 ~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~  217 (297)
T 2egg_A          138 TLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMH  217 (297)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCS
T ss_pred             CCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCC
Confidence            4678999999999999999999999998 9999999865421      11   11  13566778899999999986542


Q ss_pred             hh--h-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          213 TH--H-MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       213 t~--~-~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      ..  . .+.   ...++++.+++|++.. +..+. |+++.++.++.
T Consensus       218 ~~~~~~~i~---~~~l~~~~~v~D~~y~-P~~T~-ll~~A~~~G~~  258 (297)
T 2egg_A          218 PRVEVQPLS---LERLRPGVIVSDIIYN-PLETK-WLKEAKARGAR  258 (297)
T ss_dssp             SCCSCCSSC---CTTCCTTCEEEECCCS-SSSCH-HHHHHHHTTCE
T ss_pred             CCCCCCCCC---HHHcCCCCEEEEcCCC-CCCCH-HHHHHHHCcCE
Confidence            11  1 122   2457899999999885 34443 76766766554

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.54  E-value=1.5e-07  Score=84.30  Aligned_cols=79  Identities=15%  Similarity=0.314  Sum_probs=66.2

Q ss_pred             ccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHH--HhhcCCCEEEEeccCChhhhhcccHH
Q 043239          144 STLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVS--GLAADSDVLIVCCALTEETHHMINKD  220 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~--e~l~~aDiV~~~lp~~~~t~~~i~~~  220 (286)
                      .+++|+++.|||.|. +|+.+|+.|...|++|+++++..         .+++  +.+++||+|+.+++.    .+++..+
T Consensus       161 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T---------~~l~l~~~~~~ADIVI~Avg~----p~~I~~~  227 (300)
T 4a26_A          161 IEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGT---------STEDMIDYLRTADIVIAAMGQ----PGYVKGE  227 (300)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTS---------CHHHHHHHHHTCSEEEECSCC----TTCBCGG
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCC---------CCchhhhhhccCCEEEECCCC----CCCCcHH
Confidence            468999999999988 79999999999999999998732         2567  999999999999984    3467665


Q ss_pred             HHhcCCCCcEEEEcCCCc
Q 043239          221 VMTALGKEGVIINVGRGA  238 (286)
Q Consensus       221 ~l~~mk~g~ilvn~srg~  238 (286)
                      .   +|+|+++||++.-.
T Consensus       228 ~---vk~GavVIDvgi~~  242 (300)
T 4a26_A          228 W---IKEGAAVVDVGTTP  242 (300)
T ss_dssp             G---SCTTCEEEECCCEE
T ss_pred             h---cCCCcEEEEEeccC
Confidence            5   59999999998543

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=98.54  E-value=4.1e-08  Score=89.47  Aligned_cols=96  Identities=18%  Similarity=0.269  Sum_probs=69.1

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----C-----------cccccCHHHhhcCCCEEEEeccCCh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----S-----------YPFYANVSGLAADSDVLIVCCALTE  211 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~-----------~~~~~~l~e~l~~aDiV~~~lp~~~  211 (286)
                      -++|+|||+|.||..+|..|...|++|.+|+|+.++..     +           .....++.+ ++.+|+|++++|. .
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~-~   91 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPV-Q   91 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCG-G
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCH-H
Confidence            35899999999999999999999999999999754321     1           233457778 8899999999993 5


Q ss_pred             hhhhcccHHHHhcCC-CCcEEEEcCCC-cccCHHHHHHHHH
Q 043239          212 ETHHMINKDVMTALG-KEGVIINVGRG-ALIDEKELVHFLV  250 (286)
Q Consensus       212 ~t~~~i~~~~l~~mk-~g~ilvn~srg-~~vd~~al~~al~  250 (286)
                      .++.++     ..++ ++.++|+++.| +.-..+.+.+.+.
T Consensus        92 ~~~~v~-----~~l~~~~~~vv~~~nGi~~~~~~~l~~~~~  127 (335)
T 1z82_A           92 YIREHL-----LRLPVKPSMVLNLSKGIEIKTGKRVSEIVE  127 (335)
T ss_dssp             GHHHHH-----TTCSSCCSEEEECCCCCCTTTCCCHHHHHH
T ss_pred             HHHHHH-----HHhCcCCCEEEEEeCCCCCCccCcHHHHHH
Confidence            555443     3343 78899999877 3222233444443

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.54  E-value=3e-08  Score=84.12  Aligned_cols=111  Identities=20%  Similarity=0.232  Sum_probs=78.4

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC------C-----c-ccccCHHHhhcCCCEEEEeccCChhhhh
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------S-----Y-PFYANVSGLAADSDVLIVCCALTEETHH  215 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~-----~-~~~~~l~e~l~~aDiV~~~lp~~~~t~~  215 (286)
                      ++|+|+| .|.||+.+++.|...|++|.+++|+.++..      +     . ....++.++++++|+|++++|. .....
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vi~~~~~-~~~~~   79 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPW-EHAID   79 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCH-HHHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCChhhHHHHHhcCCEEEEeCCh-hhHHH
Confidence            4799999 999999999999999999999998764321      1     0 1135677889999999999983 34444


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccC------------HHHHHHHHHhCCeeEEEeeccCCCC
Q 043239          216 MINKDVMTALGKEGVIINVGRGALID------------EKELVHFLVRGSLVELVLMCLRTSL  266 (286)
Q Consensus       216 ~i~~~~l~~mk~g~ilvn~srg~~vd------------~~al~~al~~~~i~ga~lDv~~~e~  266 (286)
                      ++. +..+.++ +.++|++++|--.+            .+.+.+.+...    ..++++.+.+
T Consensus        80 ~~~-~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~~----~~v~~~~~~~  136 (212)
T 1jay_A           80 TAR-DLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESE----KVVSALHTIP  136 (212)
T ss_dssp             HHH-HTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTCS----CEEECCTTCC
T ss_pred             HHH-HHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCCC----eEEEEccchH
Confidence            442 3334454 89999999875432            56777776532    2456665543

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.53  E-value=3.1e-07  Score=82.29  Aligned_cols=81  Identities=17%  Similarity=0.343  Sum_probs=68.2

Q ss_pred             cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.++.|+++.|||.|. +|+.+|+.|...|++|++.++.         ..++.+.+++||+|+.+++.    .++|..++
T Consensus       160 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~---------t~~L~~~~~~ADIVI~Avg~----p~~I~~~~  226 (301)
T 1a4i_A          160 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK---------TAHLDEEVNKGDILVVATGQ----PEMVKGEW  226 (301)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------CSSHHHHHTTCSEEEECCCC----TTCBCGGG
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC---------cccHHHHhccCCEEEECCCC----cccCCHHH
Confidence            4469999999999996 6999999999999999998753         35899999999999999874    34677766


Q ss_pred             HhcCCCCcEEEEcCCCcc
Q 043239          222 MTALGKEGVIINVGRGAL  239 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~  239 (286)
                         +|+|+++||+|.-.+
T Consensus       227 ---vk~GavVIDVgi~~~  241 (301)
T 1a4i_A          227 ---IKPGAIVIDCGINYV  241 (301)
T ss_dssp             ---SCTTCEEEECCCBC-
T ss_pred             ---cCCCcEEEEccCCCc
Confidence               589999999997654

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.53  E-value=4.3e-08  Score=87.73  Aligned_cols=103  Identities=14%  Similarity=0.202  Sum_probs=72.9

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc------------ccCHHHhhc---CCCEEEEecc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF------------YANVSGLAA---DSDVLIVCCA  208 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~------------~~~l~e~l~---~aDiV~~~lp  208 (286)
                      ++|+|||+|.||..+|..|...|++|++++|+.+...     +...            ..+..++.+   ++|+|++++|
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~   83 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK   83 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence            5899999999999999999999999999999764321     1100            113334444   8999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239          209 LTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       209 ~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i  254 (286)
                      . .....++ ++..+.++++.++|+++.|- -..+.+.+.+.+.++
T Consensus        84 ~-~~~~~v~-~~l~~~l~~~~~iv~~~~g~-~~~~~l~~~~~~~~v  126 (316)
T 2ew2_A           84 A-QQLDAMF-KAIQPMITEKTYVLCLLNGL-GHEDVLEKYVPKENI  126 (316)
T ss_dssp             H-HHHHHHH-HHHGGGCCTTCEEEECCSSS-CTHHHHTTTSCGGGE
T ss_pred             c-ccHHHHH-HHHHHhcCCCCEEEEecCCC-CcHHHHHHHcCCccE
Confidence            4 4555554 45667788999999998753 234556666655444

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.52  E-value=2.4e-07  Score=82.45  Aligned_cols=80  Identities=21%  Similarity=0.421  Sum_probs=66.8

Q ss_pred             cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.+++|+++.|||.|. +|+.+|..|...|++|++..+.         ..++++.+++||+|+.+++.    .+++..+.
T Consensus       156 ~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~---------T~~L~~~~~~ADIVI~Avg~----p~~I~~~~  222 (286)
T 4a5o_A          156 GADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRF---------TRDLADHVSRADLVVVAAGK----PGLVKGEW  222 (286)
T ss_dssp             TCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTT---------CSCHHHHHHTCSEEEECCCC----TTCBCGGG
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC---------CcCHHHHhccCCEEEECCCC----CCCCCHHH
Confidence            3468999999999987 7999999999999999988653         24789999999999999873    44677655


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 043239          222 MTALGKEGVIINVGRGA  238 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~  238 (286)
                         +|+|+++||++.-.
T Consensus       223 ---vk~GavVIDvgi~~  236 (286)
T 4a5o_A          223 ---IKEGAIVIDVGINR  236 (286)
T ss_dssp             ---SCTTCEEEECCSCS
T ss_pred             ---cCCCeEEEEecccc
Confidence               59999999998543

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.50  E-value=8.8e-08  Score=91.40  Aligned_cols=112  Identities=13%  Similarity=0.177  Sum_probs=78.0

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCC---------------------------cccccCHHHhhcCC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS---------------------------YPFYANVSGLAADS  200 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~---------------------------~~~~~~l~e~l~~a  200 (286)
                      -++|+|||+|.||..+|..+...|++|+++|++.+....                           .....++ +.+++|
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a  115 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV  115 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence            468999999999999999999999999999987642110                           0113455 567899


Q ss_pred             CEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccC
Q 043239          201 DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLR  263 (286)
Q Consensus       201 DiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~  263 (286)
                      |+|+.++|...+....+-++..+.++++++|++ +..+ +....+.+.+.. .-+.+++..|.
T Consensus       116 DlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~s-nTs~-~~~~~la~~~~~-~~~~ig~hf~~  175 (463)
T 1zcj_A          116 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCT-NTSA-LNVDDIASSTDR-PQLVIGTHFFS  175 (463)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEE-CCSS-SCHHHHHTTSSC-GGGEEEEEECS
T ss_pred             CEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEe-CCCC-cCHHHHHHHhcC-CcceEEeecCC
Confidence            999999997654444444556677899999887 3333 334466665542 23345666664

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.47  E-value=1.8e-07  Score=82.39  Aligned_cols=100  Identities=16%  Similarity=0.145  Sum_probs=74.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCCC------cccccCHHHhhcCCCEEEEeccCChhh-hhcc
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVS------YPFYANVSGLAADSDVLIVCCALTEET-HHMI  217 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~~------~~~~~~l~e~l~~aDiV~~~lp~~~~t-~~~i  217 (286)
                      +.| +++|||.|.+|++++..|...|+ +|++++|+.++...      .....++.+.++++|+|++++|..-.. ...+
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~~~i  185 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEELPV  185 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSCCCSC
T ss_pred             CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCCCCCC
Confidence            578 99999999999999999999999 89999998764321      123467778899999999999864211 1234


Q ss_pred             cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          218 NKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       218 ~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      ..+.   ++++.+++|+..+   .+.-+.++.+.|
T Consensus       186 ~~~~---l~~~~~V~Divy~---~T~ll~~A~~~G  214 (253)
T 3u62_A          186 SDDS---LKNLSLVYDVIYF---DTPLVVKARKLG  214 (253)
T ss_dssp             CHHH---HTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred             CHHH---hCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence            4433   5789999999888   455555555555

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.42  E-value=7.8e-08  Score=96.42  Aligned_cols=113  Identities=12%  Similarity=0.111  Sum_probs=80.1

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------------C-------------cccccCHHHhhc
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------S-------------YPFYANVSGLAA  198 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~-------------~~~~~~l~e~l~  198 (286)
                      =++|+|||+|.||..+|..+...|++|++||++.+...                +             .....++ +.++
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~  392 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFG  392 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGG
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHC
Confidence            35799999999999999999999999999999865321                1             1123455 6789


Q ss_pred             CCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCC
Q 043239          199 DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRT  264 (286)
Q Consensus       199 ~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~  264 (286)
                      +||+|+.++|...+....+-++..+.++++++|++.+.+  +....+.+.+. ..-+.+++..|.+
T Consensus       393 ~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~-~~~~~ig~hf~~P  455 (715)
T 1wdk_A          393 NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST--ISISLLAKALK-RPENFVGMHFFNP  455 (715)
T ss_dssp             GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS--SCHHHHGGGCS-CGGGEEEEECCSS
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC--CCHHHHHHHhc-CccceEEEEccCC
Confidence            999999999987766555556677789999998754433  33345555553 2223466777763

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=98.36  E-value=3e-07  Score=81.59  Aligned_cols=104  Identities=13%  Similarity=0.070  Sum_probs=74.3

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCc----ccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH-
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY----PFYANVSGLAADSDVLIVCCALTEETHHMINKDVM-  222 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~----~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l-  222 (286)
                      ++++.|+|.|.+|++++..|...|.+|++++|+.++....    ....+++++ .++|+|++++|..-.....+..+.+ 
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~~~~~l-~~~DiVInaTp~Gm~~~~~l~~~~l~  196 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCFMEPPK-SAFDLIINATSASLHNELPLNKEVLK  196 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEESSCCS-SCCSEEEECCTTCCCCSCSSCHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEecHHHh-ccCCEEEEcccCCCCCCCCCChHHHH
Confidence            7899999999999999999999999999999998764311    011133333 3899999999976432234555532 


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          223 TALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       223 ~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      +.++++.+++|+....  .+. ++++.++.++.
T Consensus       197 ~~l~~~~~v~D~vY~P--~T~-ll~~A~~~G~~  226 (269)
T 3phh_A          197 GYFKEGKLAYDLAYGF--LTP-FLSLAKELKTP  226 (269)
T ss_dssp             HHHHHCSEEEESCCSS--CCH-HHHHHHHTTCC
T ss_pred             hhCCCCCEEEEeCCCC--chH-HHHHHHHCcCE
Confidence            3577899999999875  555 66555555443

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.35  E-value=2e-07  Score=93.57  Aligned_cols=112  Identities=15%  Similarity=0.072  Sum_probs=78.4

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------------C-------------cccccCHHHhhcC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------S-------------YPFYANVSGLAAD  199 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~-------------~~~~~~l~e~l~~  199 (286)
                      ++|+|||+|.||..+|..+...|++|++||++.+...                +             .....++ +.+++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~  391 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD  391 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence            5799999999999999999999999999999764211                1             1123455 57899


Q ss_pred             CCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCC
Q 043239          200 SDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRT  264 (286)
Q Consensus       200 aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~  264 (286)
                      ||+|+.++|...+....+-++..+.++++++|++.+.+  +....+.+.+.. .-+.+++..|.+
T Consensus       392 aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~-p~~~iG~hf~~P  453 (725)
T 2wtb_A          392 VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST--IDLNKIGERTKS-QDRIVGAHFFSP  453 (725)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHTTTCSC-TTTEEEEEECSS
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHHhcC-CCCEEEecCCCC
Confidence            99999999987665555545677789999988654333  333455555432 223456666763

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=98.32  E-value=1.7e-06  Score=69.14  Aligned_cols=103  Identities=16%  Similarity=0.141  Sum_probs=77.0

Q ss_pred             CCEEEEEcC----ChHHHHHHHHhccCCCEEEEECCC--CCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          148 GKRVGIVGL----GSIGSEVAKRLVPFGCSIAYTSRK--KKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       148 g~~vgIiG~----G~iG~~~A~~l~~~g~~V~~~~r~--~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      -++|+|||.    |.+|..+++.|...|++|+..++.  .+...+...+.+++|+-...|++++++|. +....++. +.
T Consensus        13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~~i~G~~~~~sl~el~~~vDlavi~vp~-~~~~~v~~-~~   90 (140)
T 1iuk_A           13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRPP-SALMDHLP-EV   90 (140)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSCH-HHHTTTHH-HH
T ss_pred             CCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccCcCCCEEecCCHHHCCCCCCEEEEEeCH-HHHHHHHH-HH
Confidence            458999999    899999999999999997777776  33344566678899988889999999995 56666664 33


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEE
Q 043239          222 MTALGKEGVIINVGRGALIDEKELVHFLVRGSLVEL  257 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga  257 (286)
                      .+ ...+.++++.+..    ++.+.+..++.+++..
T Consensus        91 ~~-~gi~~i~~~~g~~----~~~~~~~a~~~Gir~v  121 (140)
T 1iuk_A           91 LA-LRPGLVWLQSGIR----HPEFEKALKEAGIPVV  121 (140)
T ss_dssp             HH-HCCSCEEECTTCC----CHHHHHHHHHTTCCEE
T ss_pred             HH-cCCCEEEEcCCcC----HHHHHHHHHHcCCEEE
Confidence            33 2334666665432    5888888888877644

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=98.31  E-value=4e-06  Score=77.58  Aligned_cols=91  Identities=14%  Similarity=0.288  Sum_probs=74.8

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCC----CCCC----C-----------CcccccCHHHhhcCCCE
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRK----KKPG----V-----------SYPFYANVSGLAADSDV  202 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~----~~~~----~-----------~~~~~~~l~e~l~~aDi  202 (286)
                      ++++.+.+|.|+|.|.+|..+|+.|.+.|. +|+++||+    ..+.    .           ......+|.|+++++|+
T Consensus       187 g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADV  266 (388)
T 1vl6_A          187 EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADF  266 (388)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSE
T ss_pred             CCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCE
Confidence            446889999999999999999999999999 89999998    4331    1           11124579999999999


Q ss_pred             EEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 043239          203 LIVCCALTEETHHMINKDVMTALGKEGVIINVGRGA  238 (286)
Q Consensus       203 V~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~  238 (286)
                      ++-+.     ..+++.+++++.|+++++++.+|+..
T Consensus       267 lIG~S-----ap~l~t~emVk~Ma~~pIIfalSNPt  297 (388)
T 1vl6_A          267 FIGVS-----RGNILKPEWIKKMSRKPVIFALANPV  297 (388)
T ss_dssp             EEECS-----CSSCSCHHHHTTSCSSCEEEECCSSS
T ss_pred             EEEeC-----CCCccCHHHHHhcCCCCEEEEcCCCC
Confidence            88763     13899999999999999999999764

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=98.30  E-value=7.1e-08  Score=85.64  Aligned_cols=82  Identities=17%  Similarity=0.061  Sum_probs=55.3

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEE-EEECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSI-AYTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V-~~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      ++|||||+|.||+.+++.|... ++| .+|+|+.+...      +. ...+++++++++|+|++++|... .     .+.
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~~~-~-----~~v   74 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPDRY-I-----KTV   74 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCTTT-H-----HHH
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCChHH-H-----HHH
Confidence            4799999999999999999887 888 58998765321      22 45577788889999999999643 2     233


Q ss_pred             HhcC-CCCcEEEEcCCCc
Q 043239          222 MTAL-GKEGVIINVGRGA  238 (286)
Q Consensus       222 l~~m-k~g~ilvn~srg~  238 (286)
                      +..+ +++.++||++.+-
T Consensus        75 ~~~l~~~~~ivi~~s~~~   92 (276)
T 2i76_A           75 ANHLNLGDAVLVHCSGFL   92 (276)
T ss_dssp             HTTTCCSSCCEEECCSSS
T ss_pred             HHHhccCCCEEEECCCCC
Confidence            3444 6788999998553

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=98.30  E-value=5.9e-07  Score=84.09  Aligned_cols=89  Identities=21%  Similarity=0.326  Sum_probs=70.0

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCC---C--------CCCcccccCHHHhhcCCCEEEEeccCChhh
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK---P--------GVSYPFYANVSGLAADSDVLIVCCALTEET  213 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~---~--------~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t  213 (286)
                      -|+||+|+|||+|+-|.+-|..|+..|.+|.+--|...   .        ..++. ..+..|+++.||+|++.+|+..+.
T Consensus        34 ~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~-v~~~~eA~~~ADvV~~L~PD~~q~  112 (491)
T 3ulk_A           34 YLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFK-VGTYEELIPQADLVINLTPDKQHS  112 (491)
T ss_dssp             GGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCE-EEEHHHHGGGCSEEEECSCGGGHH
T ss_pred             HHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCE-ecCHHHHHHhCCEEEEeCChhhHH
Confidence            48999999999999999999999999999987655221   1        12333 458999999999999999975444


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCC
Q 043239          214 HHMINKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       214 ~~~i~~~~l~~mk~g~ilvn~srg  237 (286)
                      . +. ++..++||+|+.+. .|.|
T Consensus       113 ~-vy-~~I~p~lk~G~~L~-faHG  133 (491)
T 3ulk_A          113 D-VV-RTVQPLMKDGAALG-YSHG  133 (491)
T ss_dssp             H-HH-HHHGGGSCTTCEEE-ESSC
T ss_pred             H-HH-HHHHhhCCCCCEEE-ecCc
Confidence            3 44 56999999999865 4555

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=98.28  E-value=2.9e-06  Score=68.10  Aligned_cols=104  Identities=15%  Similarity=0.169  Sum_probs=77.1

Q ss_pred             CCEEEEEcC----ChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHh
Q 043239          148 GKRVGIVGL----GSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMT  223 (286)
Q Consensus       148 g~~vgIiG~----G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~  223 (286)
                      -++|+|||.    |.+|..+++.|+..|++|+..++......+...+.+++++....|++++++|. +....++. +..+
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~~l~~~vDlvvi~vp~-~~~~~vv~-~~~~   99 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYVE-QAIK   99 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSCH-HHHHHHHH-HHHH
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCCeECCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHHH-HHHH
Confidence            579999999    79999999999999999877777654444566678999998889999999995 55555553 3333


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEE
Q 043239          224 ALGKEGVIINVGRGALIDEKELVHFLVRGSLVELV  258 (286)
Q Consensus       224 ~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~  258 (286)
                       ...+.+++..+  .  .++.+.+.+++.+++..+
T Consensus       100 -~gi~~i~~~~g--~--~~~~l~~~a~~~Gi~vvG  129 (144)
T 2d59_A          100 -KGAKVVWFQYN--T--YNREASKKADEAGLIIVA  129 (144)
T ss_dssp             -HTCSEEEECTT--C--CCHHHHHHHHHTTCEEEE
T ss_pred             -cCCCEEEECCC--c--hHHHHHHHHHHcCCEEEc
Confidence             23345665533  2  378888988888777544

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.26  E-value=2.4e-06  Score=77.35  Aligned_cols=83  Identities=19%  Similarity=0.290  Sum_probs=64.6

Q ss_pred             CCEEEEEcCChHHHHHHHHhcc-CCC-EEEEECCCCCCCC---------Cc--ccccCHHHhhcCCCEEEEeccCChhhh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVP-FGC-SIAYTSRKKKPGV---------SY--PFYANVSGLAADSDVLIVCCALTEETH  214 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~-~g~-~V~~~~r~~~~~~---------~~--~~~~~l~e~l~~aDiV~~~lp~~~~t~  214 (286)
                      .++++|||.|.||+.+++.|.. ++. +|.+|||+ +...         +.  ... ++++++++||+|++|+|..   .
T Consensus       121 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~---~  195 (313)
T 3hdj_A          121 SSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRST---T  195 (313)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCS---S
T ss_pred             CcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCC---C
Confidence            5699999999999999999875 344 79999999 3211         11  224 8999999999999999864   4


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCc
Q 043239          215 HMINKDVMTALGKEGVIINVGRGA  238 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~srg~  238 (286)
                      .++..   +.+++|+.++++|...
T Consensus       196 pvl~~---~~l~~G~~V~~vGs~~  216 (313)
T 3hdj_A          196 PLFAG---QALRAGAFVGAIGSSL  216 (313)
T ss_dssp             CSSCG---GGCCTTCEEEECCCSS
T ss_pred             cccCH---HHcCCCcEEEECCCCC
Confidence            56653   4589999999998653

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.24  E-value=3.8e-06  Score=75.93  Aligned_cols=104  Identities=17%  Similarity=0.253  Sum_probs=74.9

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC------------CC------cccccCHHHhhcCCCEEEEeccCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG------------VS------YPFYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~------------~~------~~~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      ++|+|||.|.||..+|..|...|++|.+|+|+....            .+      .....+++++.+.+|+|++++|..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK~~   82 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDYETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIKVV   82 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTHHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChHHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecCCC
Confidence            689999999999999999999999999999975210            00      112346667666899999999954


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          211 EETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       211 ~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                       ++..++ +...+.+++++++|.+..|= -.++.+.+.+...++.
T Consensus        83 -~~~~~l-~~l~~~l~~~t~Iv~~~nGi-~~~~~l~~~~~~~~vl  124 (320)
T 3i83_A           83 -EGADRV-GLLRDAVAPDTGIVLISNGI-DIEPEVAAAFPDNEVI  124 (320)
T ss_dssp             -TTCCHH-HHHTTSCCTTCEEEEECSSS-SCSHHHHHHSTTSCEE
T ss_pred             -ChHHHH-HHHHhhcCCCCEEEEeCCCC-ChHHHHHHHCCCCcEE
Confidence             344433 45566788899999998772 2246677777655543

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=98.22  E-value=3.3e-07  Score=82.20  Aligned_cols=99  Identities=13%  Similarity=0.247  Sum_probs=69.0

Q ss_pred             CEEEEEcCChHHHHHHHHhccC-----C-CEEEEECCCCCCC------CCcccc-------------cCHHHhhcCCCEE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF-----G-CSIAYTSRKKKPG------VSYPFY-------------ANVSGLAADSDVL  203 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~-----g-~~V~~~~r~~~~~------~~~~~~-------------~~l~e~l~~aDiV  203 (286)
                      ++|+|||+|.||..+|..|...     | ++|++|+| .+..      .+....             .+..+.+..+|+|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   87 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYI   87 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEE
Confidence            5899999999999999999988     8 99999998 3321      121111             1233567899999


Q ss_pred             EEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239          204 IVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVR  251 (286)
Q Consensus       204 ~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~  251 (286)
                      ++++|... ...++ +...+.++++.++|++..| +-..+.+.+.+.+
T Consensus        88 il~vk~~~-~~~v~-~~i~~~l~~~~~iv~~~nG-~~~~~~l~~~l~~  132 (317)
T 2qyt_A           88 LFCTKDYD-MERGV-AEIRPMIGQNTKILPLLNG-ADIAERMRTYLPD  132 (317)
T ss_dssp             EECCSSSC-HHHHH-HHHGGGEEEEEEEEECSCS-SSHHHHHTTTSCT
T ss_pred             EEecCccc-HHHHH-HHHHhhcCCCCEEEEccCC-CCcHHHHHHHCCC
Confidence            99999654 44444 3455667788999999776 2223555555544

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=98.20  E-value=8.1e-07  Score=80.94  Aligned_cols=105  Identities=16%  Similarity=0.244  Sum_probs=74.8

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC----CCc-------------ccccCHHHhhcCCCEEEEeccCC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG----VSY-------------PFYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~----~~~-------------~~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      .++|+|||+|.||..+|..|...|++|.+++|+....    .+.             ....++++ +..+|+|++++|. 
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~-   80 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARGATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA-   80 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCHHHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH-
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEChHHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc-
Confidence            4689999999999999999999999999999852110    111             11246666 5899999999985 


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCCCc------------------ccCHHHHHHHHHhCCee
Q 043239          211 EETHHMINKDVMTALGKEGVIINVGRGA------------------LIDEKELVHFLVRGSLV  255 (286)
Q Consensus       211 ~~t~~~i~~~~l~~mk~g~ilvn~srg~------------------~vd~~al~~al~~~~i~  255 (286)
                      .++..++ ++..+.+++++++|.+..|=                  +-.++.+.+.+...++.
T Consensus        81 ~~~~~~~-~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~  142 (335)
T 3ghy_A           81 PALESVA-AGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVL  142 (335)
T ss_dssp             HHHHHHH-GGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEE
T ss_pred             hhHHHHH-HHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEE
Confidence            4555444 34455678899999998882                  23345666777555543

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=98.20  E-value=1.3e-06  Score=81.27  Aligned_cols=83  Identities=20%  Similarity=0.276  Sum_probs=69.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHhccCCC---EEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239          147 GGKRVGIVGL-GSIGSEVAKRLVPFGC---SIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM  222 (286)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~A~~l~~~g~---~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l  222 (286)
                      ...+|.|||. |..|...++.+.++|+   .|.++|++.... +..    + +.+.++|+||.++........++.++.+
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~-g~~----~-~~i~~aDivIn~vlig~~aP~Lvt~e~v  286 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSR-GGP----F-DEIPQADIFINCIYLSKPIAPFTNMEKL  286 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTT-CSC----C-THHHHSSEEEECCCCCSSCCCSCCHHHH
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccccc-CCc----h-hhHhhCCEEEECcCcCCCCCcccCHHHH
Confidence            4668999999 9999999999999998   899999875222 211    1 3466999999999986667789999999


Q ss_pred             hcC-CCCcEEEEcC
Q 043239          223 TAL-GKEGVIINVG  235 (286)
Q Consensus       223 ~~m-k~g~ilvn~s  235 (286)
                      +.| |+|++|||+|
T Consensus       287 ~~m~k~gsVIVDVA  300 (394)
T 2qrj_A          287 NNPNRRLRTVVDVS  300 (394)
T ss_dssp             CCTTCCCCEEEETT
T ss_pred             hcCcCCCeEEEEEe
Confidence            999 9999999997

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=98.18  E-value=5.9e-06  Score=74.40  Aligned_cols=104  Identities=15%  Similarity=0.194  Sum_probs=73.1

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC---CC--------------cccccCHHHhhcCCCEEEEeccCCh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG---VS--------------YPFYANVSGLAADSDVLIVCCALTE  211 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~---~~--------------~~~~~~l~e~l~~aDiV~~~lp~~~  211 (286)
                      ++|+|||.|.||..+|..|...|++|++|+|+....   .+              .....+.++ ++.+|+|++++|.. 
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk~~-   80 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRDYEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLKTF-   80 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTTHHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCCGG-
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCcHHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecCCC-
Confidence            589999999999999999999999999999975210   01              011235544 67899999999843 


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeE
Q 043239          212 ETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVE  256 (286)
Q Consensus       212 ~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~g  256 (286)
                      ++..++ +...+.+++++++|.+..|= -..+.+.+.+...++.+
T Consensus        81 ~~~~~l-~~l~~~l~~~~~iv~l~nGi-~~~~~l~~~~~~~~v~~  123 (312)
T 3hn2_A           81 ANSRYE-ELIRPLVEEGTQILTLQNGL-GNEEALATLFGAERIIG  123 (312)
T ss_dssp             GGGGHH-HHHGGGCCTTCEEEECCSSS-SHHHHHHHHTCGGGEEE
T ss_pred             CcHHHH-HHHHhhcCCCCEEEEecCCC-CcHHHHHHHCCCCcEEE
Confidence            344443 45566788999999998772 22456667776555543

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=98.18  E-value=1.6e-06  Score=78.50  Aligned_cols=100  Identities=19%  Similarity=0.333  Sum_probs=69.2

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----C-------------cccccCHHHhhcCCCEEEEec
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----S-------------YPFYANVSGLAADSDVLIVCC  207 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~-------------~~~~~~l~e~l~~aDiV~~~l  207 (286)
                      ...++|+|||.|.||..+|..|...|++|.+| ++.+...     +             .....++++ ++.+|+|++++
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilav   94 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCV   94 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECC
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEc
Confidence            34679999999999999999999999999999 6543211     1             111244544 58899999999


Q ss_pred             cCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 043239          208 ALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLV  250 (286)
Q Consensus       208 p~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~  250 (286)
                      |.. ++..++ ++..+.+++++++|.+..|=- .++.+.+.+.
T Consensus        95 k~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi~-~~~~l~~~~~  134 (318)
T 3hwr_A           95 KST-DTQSAA-LAMKPALAKSALVLSLQNGVE-NADTLRSLLE  134 (318)
T ss_dssp             CGG-GHHHHH-HHHTTTSCTTCEEEEECSSSS-HHHHHHHHCC
T ss_pred             ccc-cHHHHH-HHHHHhcCCCCEEEEeCCCCC-cHHHHHHHcC
Confidence            954 555554 455667889999999977732 2245555553

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.15  E-value=2.9e-06  Score=77.99  Aligned_cols=87  Identities=14%  Similarity=0.131  Sum_probs=66.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHhcc-CC-CEEEEECCCCCCCC----------C--cccccCHHHhhcCCCEEEEeccCChh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVP-FG-CSIAYTSRKKKPGV----------S--YPFYANVSGLAADSDVLIVCCALTEE  212 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~-~g-~~V~~~~r~~~~~~----------~--~~~~~~l~e~l~~aDiV~~~lp~~~~  212 (286)
                      ..++++|||+|.||+.+++.+.. .+ .+|.+|+|+.++..          +  ...+.+++++++++|+|++|+|.. .
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~-~  206 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADK-A  206 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCS-S
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCC-C
Confidence            35699999999999999988753 34 48999999865421          2  223578999999999999999965 2


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCC
Q 043239          213 THHMINKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       213 t~~~i~~~~l~~mk~g~ilvn~srg  237 (286)
                      ...++..   +.+++|..++++|..
T Consensus       207 ~~pvl~~---~~l~~G~~V~~vgs~  228 (350)
T 1x7d_A          207 YATIITP---DMLEPGMHLNAVGGD  228 (350)
T ss_dssp             EEEEECG---GGCCTTCEEEECSCC
T ss_pred             CCceecH---HHcCCCCEEEECCCC
Confidence            3445543   467899999999864

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.15  E-value=6.4e-07  Score=74.16  Aligned_cols=89  Identities=12%  Similarity=0.189  Sum_probs=62.8

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccC-CCEEEEECCCCCCCC-----Cccc----ccC---HHHh--hcCCCEEEEecc
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPF-GCSIAYTSRKKKPGV-----SYPF----YAN---VSGL--AADSDVLIVCCA  208 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~-g~~V~~~~r~~~~~~-----~~~~----~~~---l~e~--l~~aDiV~~~lp  208 (286)
                      .++.+++|+|+|+|.||+.+|+.|... |++|++++++++...     +...    ..+   +.++  +.++|+|++++|
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~  114 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMP  114 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCS
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC
Confidence            357788999999999999999999998 999999998765321     2211    112   3444  678999999998


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEc
Q 043239          209 LTEETHHMINKDVMTALGKEGVIINV  234 (286)
Q Consensus       209 ~~~~t~~~i~~~~l~~mk~g~ilvn~  234 (286)
                      ..+.+..++  ..+..+.+...+|..
T Consensus       115 ~~~~~~~~~--~~~~~~~~~~~ii~~  138 (183)
T 3c85_A          115 HHQGNQTAL--EQLQRRNYKGQIAAI  138 (183)
T ss_dssp             SHHHHHHHH--HHHHHTTCCSEEEEE
T ss_pred             ChHHHHHHH--HHHHHHCCCCEEEEE
Confidence            655444433  345556666666554

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.13  E-value=4.6e-06  Score=67.21  Aligned_cols=94  Identities=14%  Similarity=0.055  Sum_probs=61.3

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------Cccc----ccC---HHHh-hcCCCEEEEecc
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SYPF----YAN---VSGL-AADSDVLIVCCA  208 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~~~----~~~---l~e~-l~~aDiV~~~lp  208 (286)
                      .....+++|.|+|+|.+|+.+++.|+..|++|++++++++...      +...    ..+   +.+. +.++|+|++++|
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~   93 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTN   93 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSS
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeC
Confidence            4457788999999999999999999999999999998765421      1111    112   3333 678999999998


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 043239          209 LTEETHHMINKDVMTALGKEGVIINVGRGA  238 (286)
Q Consensus       209 ~~~~t~~~i~~~~l~~mk~g~ilvn~srg~  238 (286)
                      .......+  ......+.+...+|-..++.
T Consensus        94 ~~~~~~~~--~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           94 DDSTNFFI--SMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             CHHHHHHH--HHHHHHTSCCSEEEEECSSG
T ss_pred             CcHHHHHH--HHHHHHHCCCCeEEEEECCH
Confidence            54333222  23444445555555555554

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=98.08  E-value=5e-06  Score=77.38  Aligned_cols=86  Identities=12%  Similarity=0.132  Sum_probs=66.4

Q ss_pred             EEEEEcCChHHHHHHHHhccCCC--------EEEEECCCCCCCC------------------C------cccccCHHHhh
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGC--------SIAYTSRKKKPGV------------------S------YPFYANVSGLA  197 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~--------~V~~~~r~~~~~~------------------~------~~~~~~l~e~l  197 (286)
                      +|+|||.|.+|.++|..|...|.        +|..|.|.++...                  +      .....++++++
T Consensus        36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al  115 (391)
T 4fgw_A           36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV  115 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred             eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence            89999999999999999987553        5999988654210                  1      12346899999


Q ss_pred             cCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 043239          198 ADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       198 ~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg  237 (286)
                      ++||+|++++| ++..+.++ ++..+.++++..+|+++.|
T Consensus       116 ~~ad~ii~avP-s~~~r~~l-~~l~~~~~~~~~iv~~~KG  153 (391)
T 4fgw_A          116 KDVDIIVFNIP-HQFLPRIC-SQLKGHVDSHVRAISCLKG  153 (391)
T ss_dssp             TTCSEEEECSC-GGGHHHHH-HHHTTTSCTTCEEEECCCS
T ss_pred             hcCCEEEEECC-hhhhHHHH-HHhccccCCCceeEEeccc
Confidence            99999999999 45555554 4556678899999999988

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=98.06  E-value=2.4e-06  Score=79.64  Aligned_cols=84  Identities=10%  Similarity=0.107  Sum_probs=62.3

Q ss_pred             CEEEEEcCChHHHHHHHHhcc-CCCEEEEEC---CCCCC------CCC---------c----------ccccCHHHhhcC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVP-FGCSIAYTS---RKKKP------GVS---------Y----------PFYANVSGLAAD  199 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~-~g~~V~~~~---r~~~~------~~~---------~----------~~~~~l~e~l~~  199 (286)
                      ++|+|||.|.||..+|..|.. .|++|.+|+   |+.+.      ..+         .          ....+++++++.
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   82 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG   82 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence            589999999999999999987 599999999   64221      001         1          023467888899


Q ss_pred             CCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEc
Q 043239          200 SDVLIVCCALTEETHHMINKDVMTALGKEGVIINV  234 (286)
Q Consensus       200 aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~  234 (286)
                      +|+|++++|.. ....++ ++..+.++++++||+.
T Consensus        83 aD~Vilav~~~-~~~~v~-~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           83 ADVVILTVPAF-AHEGYF-QAMAPYVQDSALIVGL  115 (404)
T ss_dssp             CSEEEECSCGG-GHHHHH-HHHTTTCCTTCEEEET
T ss_pred             CCEEEEeCchH-HHHHHH-HHHHhhCCCCcEEEEc
Confidence            99999999954 344443 4455677889999985

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.05  E-value=3.3e-06  Score=64.00  Aligned_cols=84  Identities=15%  Similarity=0.108  Sum_probs=58.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCC-CEEEEECCCCCCCC-----Cc-------ccccCHHHhhcCCCEEEEeccCChhh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFG-CSIAYTSRKKKPGV-----SY-------PFYANVSGLAADSDVLIVCCALTEET  213 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g-~~V~~~~r~~~~~~-----~~-------~~~~~l~e~l~~aDiV~~~lp~~~~t  213 (286)
                      .+++|+|+|.|.||+.+++.|...| ++|.+++|+.++..     +.       ....++.++++++|+|+.++|... +
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~-~   82 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFL-T   82 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGG-H
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchh-h
Confidence            4679999999999999999999999 89999998764321     11       112345677889999999987432 2


Q ss_pred             hhcccHHHHhcCCCCcEEEEcC
Q 043239          214 HHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       214 ~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      ..++.    ...+.|..+++++
T Consensus        83 ~~~~~----~~~~~g~~~~~~~  100 (118)
T 3ic5_A           83 PIIAK----AAKAAGAHYFDLT  100 (118)
T ss_dssp             HHHHH----HHHHTTCEEECCC
T ss_pred             HHHHH----HHHHhCCCEEEec
Confidence            22221    1134677777775

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=98.04  E-value=2.4e-06  Score=76.18  Aligned_cols=105  Identities=17%  Similarity=0.141  Sum_probs=73.7

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCCC----c-----ccccCHHHhhcCCCEEEEeccCChhhh
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVS----Y-----PFYANVSGLAADSDVLIVCCALTEETH  214 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~~----~-----~~~~~l~e~l~~aDiV~~~lp~~~~t~  214 (286)
                      ++.|+++.|+|.|.+|++++..|...|+ +|++++|+.++...    .     ....+++++.+++|+|++++|......
T Consensus       123 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~~~  202 (281)
T 3o8q_A          123 LLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGE  202 (281)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC---
T ss_pred             CccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCCCC
Confidence            4789999999999999999999999997 99999998754321    0     112355565578999999998753221


Q ss_pred             -hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239          215 -HMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       215 -~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i  254 (286)
                       ..+..   +.++++.+++|+.-.. ..+. ++++.++.++
T Consensus       203 ~~~l~~---~~l~~~~~V~DlvY~P-~~T~-ll~~A~~~G~  238 (281)
T 3o8q_A          203 LPAIDP---VIFSSRSVCYDMMYGK-GYTV-FNQWARQHGC  238 (281)
T ss_dssp             -CSCCG---GGEEEEEEEEESCCCS-SCCH-HHHHHHHTTC
T ss_pred             CCCCCH---HHhCcCCEEEEecCCC-ccCH-HHHHHHHCCC
Confidence             12332   3467899999998764 4444 4455555443

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=98.03  E-value=2.3e-05  Score=72.60  Aligned_cols=119  Identities=14%  Similarity=0.193  Sum_probs=89.5

Q ss_pred             CeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCC
Q 043239           93 GILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGC  172 (286)
Q Consensus        93 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~  172 (286)
                      +|++.|. +.  .-+|=-+++.+++.+|-                    .|+.+...+|.|+|.|..|..+|+.+.++|.
T Consensus       156 ~ipvf~D-Di--qGTa~V~lAall~al~l--------------------~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga  212 (398)
T 2a9f_A          156 HIPVFHD-DQ--HGTAIVVLAAIFNSLKL--------------------LKKSLDEVSIVVNGGGSAGLSITRKLLAAGA  212 (398)
T ss_dssp             SSCEEEH-HH--HHHHHHHHHHHHHHHHT--------------------TTCCTTSCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             Ccceecc-hh--hhHHHHHHHHHHHHHHH--------------------hCCCCCccEEEEECCCHHHHHHHHHHHHcCC
Confidence            5888873 22  23444566666665552                    3457889999999999999999999999999


Q ss_pred             -EEEEECCCC-------CCCCCc-----------ccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEE
Q 043239          173 -SIAYTSRKK-------KPGVSY-----------PFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIIN  233 (286)
Q Consensus       173 -~V~~~~r~~-------~~~~~~-----------~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn  233 (286)
                       +|+++|++.       ......           ....+|.|+++.+|+++-+-     ..+++.+++++.|+++++++.
T Consensus       213 ~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~S-----apgl~T~EmVk~Ma~~pIIfa  287 (398)
T 2a9f_A          213 TKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIGVS-----APGVLKAEWISKMAARPVIFA  287 (398)
T ss_dssp             CEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEECC-----STTCCCHHHHHTSCSSCEEEE
T ss_pred             CeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEecC-----CCCCCCHHHHHhhCCCCEEEE
Confidence             899999863       111111           11346999999999987652     368999999999999999999


Q ss_pred             cCCCcc
Q 043239          234 VGRGAL  239 (286)
Q Consensus       234 ~srg~~  239 (286)
                      +|+...
T Consensus       288 lsNPt~  293 (398)
T 2a9f_A          288 MANPIP  293 (398)
T ss_dssp             CCSSSC
T ss_pred             CCCCCc
Confidence            998753

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.03  E-value=4.2e-06  Score=65.37  Aligned_cols=85  Identities=20%  Similarity=0.263  Sum_probs=57.4

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------Cccc----ccCHH---Hh-hcCCCEEEEeccCChhh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SYPF----YANVS---GL-AADSDVLIVCCALTEET  213 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~~~----~~~l~---e~-l~~aDiV~~~lp~~~~t  213 (286)
                      +++|+|+|+|.+|+.+++.|...|++|++++++.+...      +...    ..+.+   +. +.++|+|++++|.....
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~   83 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN   83 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHH
Confidence            57999999999999999999999999999998754321      2111    11222   22 57899999998854332


Q ss_pred             hhcccHHHHhcCCCCcEEEEc
Q 043239          214 HHMINKDVMTALGKEGVIINV  234 (286)
Q Consensus       214 ~~~i~~~~l~~mk~g~ilvn~  234 (286)
                      .  .-......++++.+++-+
T Consensus        84 ~--~~~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           84 L--MSSLLAKSYGINKTIARI  102 (140)
T ss_dssp             H--HHHHHHHHTTCCCEEEEC
T ss_pred             H--HHHHHHHHcCCCEEEEEe
Confidence            2  223445567777766644

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=98.03  E-value=4.2e-06  Score=75.97  Aligned_cols=115  Identities=13%  Similarity=0.076  Sum_probs=84.3

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC--------------------C----------cccccCHHHhh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV--------------------S----------YPFYANVSGLA  197 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------------------~----------~~~~~~l~e~l  197 (286)
                      -.+|+|||.|.||..+|..+...|++|+.+|++++...                    +          .....++.+.+
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~   85 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAV   85 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHT
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHh
Confidence            35899999999999999999999999999998764210                    0          11246788899


Q ss_pred             cCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239          198 ADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS  265 (286)
Q Consensus       198 ~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e  265 (286)
                      ++||+|+=++|..-+.+.-+-++.=+.++++++|-.-+.+  +.-..+.+.+.. .=+..++=.|.+.
T Consensus        86 ~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs--l~is~ia~~~~~-p~r~ig~HffNP~  150 (319)
T 3ado_A           86 EGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC--LLPSKLFTGLAH-VKQCIVAHPVNPP  150 (319)
T ss_dssp             TTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS--CCHHHHHTTCTT-GGGEEEEEECSST
T ss_pred             ccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh--ccchhhhhhccC-CCcEEEecCCCCc
Confidence            9999999999988887766666777778999987544333  556677776643 3344556566554

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.99  E-value=1.1e-06  Score=78.64  Aligned_cols=88  Identities=18%  Similarity=0.178  Sum_probs=64.2

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cc---ccccCHHHhh-cCCCEEEEeccCChhhhhcccH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SY---PFYANVSGLA-ADSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~---~~~~~l~e~l-~~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      ++|+|||.|.||..+|..|...|++|.+++|+.+...     +.   ....+..+.+ ..+|+|++++|.. ++..++ +
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~-~~~~~l-~   80 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTH-QLDAVI-P   80 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGG-GHHHHG-G
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCcc-CHHHHH-H
Confidence            5899999999999999999988999999999854211     11   0112334444 7899999999843 455554 3


Q ss_pred             HHHhcCCCCcEEEEcCCCc
Q 043239          220 DVMTALGKEGVIINVGRGA  238 (286)
Q Consensus       220 ~~l~~mk~g~ilvn~srg~  238 (286)
                      +..+.+++++++|.+..|=
T Consensus        81 ~l~~~l~~~~~iv~~~nGi   99 (294)
T 3g17_A           81 HLTYLAHEDTLIILAQNGY   99 (294)
T ss_dssp             GHHHHEEEEEEEEECCSSC
T ss_pred             HHHHhhCCCCEEEEeccCc
Confidence            4555677888999998884

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.99  E-value=1.3e-05  Score=72.83  Aligned_cols=83  Identities=14%  Similarity=0.171  Sum_probs=64.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHhcc-CC-CEEEEECCCCCCCC-----------CcccccCHHHhhcCCCEEEEeccCChhh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVP-FG-CSIAYTSRKKKPGV-----------SYPFYANVSGLAADSDVLIVCCALTEET  213 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~-~g-~~V~~~~r~~~~~~-----------~~~~~~~l~e~l~~aDiV~~~lp~~~~t  213 (286)
                      ..++++|||+|.+|+.+++.|.. .+ .+|.+|+|+.++..           ... +.++++++ ++|+|++|+|..   
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~---  198 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSR---  198 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCS---
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCC---
Confidence            35699999999999999998876 34 47999999876532           123 67889999 999999999864   


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCC
Q 043239          214 HHMINKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       214 ~~~i~~~~l~~mk~g~ilvn~srg  237 (286)
                      ..++..   ..+++|..+++++.-
T Consensus       199 ~pv~~~---~~l~~G~~V~~ig~~  219 (322)
T 1omo_A          199 KPVVKA---EWVEEGTHINAIGAD  219 (322)
T ss_dssp             SCCBCG---GGCCTTCEEEECSCC
T ss_pred             CceecH---HHcCCCeEEEECCCC
Confidence            345543   467899999999643

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.99  E-value=2.4e-06  Score=75.73  Aligned_cols=105  Identities=12%  Similarity=0.075  Sum_probs=69.3

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCc---------ccccCHHHhhc-CCCEEEEeccCChhhh
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY---------PFYANVSGLAA-DSDVLIVCCALTEETH  214 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~---------~~~~~l~e~l~-~aDiV~~~lp~~~~t~  214 (286)
                      ++.+++++|+|.|.+|++++..|...|.+|++++|+.++....         ....+++++.+ ++|+|++++|......
T Consensus       116 ~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~~~~  195 (272)
T 1p77_A          116 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLSGG  195 (272)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-----
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCCCCC
Confidence            4678999999999999999999999999999999986542210         01223444434 8999999998654321


Q ss_pred             -hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          215 -HMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       215 -~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                       .-+..+.   ++++.+++|+......++.-+..+-+.|
T Consensus       196 ~~~i~~~~---l~~~~~v~D~~y~p~~~t~ll~~a~~~G  231 (272)
T 1p77_A          196 TASVDAEI---LKLGSAFYDMQYAKGTDTPFIALCKSLG  231 (272)
T ss_dssp             --CCCHHH---HHHCSCEEESCCCTTSCCHHHHHHHHTT
T ss_pred             CCCCCHHH---cCCCCEEEEeeCCCCcCCHHHHHHHHcC
Confidence             0133333   3578899999886654355443343433

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.97  E-value=5.8e-06  Score=74.75  Aligned_cols=100  Identities=11%  Similarity=0.134  Sum_probs=68.5

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCCC-----------------cccccCHHHhhcCCCEEEEeccC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVS-----------------YPFYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~~-----------------~~~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      .++|+|||.|.||..+|..|...|+ +|..+|++.+....                 .....++ +.+++||+|+++++.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~   82 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI   82 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence            4689999999999999999998888 99999998653221                 1112456 678999999999842


Q ss_pred             Ch-----------hhhhc---ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 043239          210 TE-----------ETHHM---INKDVMTALGKEGVIINVGRGALIDEKELVHFL  249 (286)
Q Consensus       210 ~~-----------~t~~~---i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al  249 (286)
                      ..           .+..+   +-++.-+ ..+++++++++.+.-+....+.+..
T Consensus        83 p~~~g~~r~d~~~~~~~i~~~i~~~i~~-~~~~~iii~~sNp~~~~~~~~~~~~  135 (317)
T 2ewd_A           83 PGRPKDDRSELLFGNARILDSVAEGVKK-YCPNAFVICITNPLDVMVSHFQKVS  135 (317)
T ss_dssp             SSCCSSCGGGGHHHHHHHHHHHHHHHHH-HCTTSEEEECCSSHHHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHhhHHHHHHHHHHHHH-HCCCcEEEEeCChHHHHHHHHHHhh
Confidence            11           11111   1122222 2468999999887666666666654

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.95  E-value=9.6e-06  Score=71.96  Aligned_cols=105  Identities=13%  Similarity=0.141  Sum_probs=71.9

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCCC------c--ccccCHHHhh-cCCCEEEEeccCChhh
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVS------Y--PFYANVSGLA-ADSDVLIVCCALTEET  213 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~~------~--~~~~~l~e~l-~~aDiV~~~lp~~~~t  213 (286)
                      .++.|+++.|+|.|.+|++++..|...|+ +|++++|+.++...      .  ....+++++- .++|+|++++|..-..
T Consensus       116 ~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~~  195 (272)
T 3pwz_A          116 EPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLTA  195 (272)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGGT
T ss_pred             CCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCCC
Confidence            35789999999999999999999999996 99999998754321      0  1122344433 7899999999864321


Q ss_pred             h-hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          214 H-HMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       214 ~-~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      . ..+..   +.++++.+++|+.-.. ..+.-|..|-+.|
T Consensus       196 ~~~~i~~---~~l~~~~~V~DlvY~P-~~T~ll~~A~~~G  231 (272)
T 3pwz_A          196 DLPPLPA---DVLGEAALAYELAYGK-GLTPFLRLAREQG  231 (272)
T ss_dssp             CCCCCCG---GGGTTCSEEEESSCSC-CSCHHHHHHHHHS
T ss_pred             CCCCCCH---HHhCcCCEEEEeecCC-CCCHHHHHHHHCC
Confidence            1 12333   3468999999997653 4455344444444

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.95  E-value=3e-06  Score=67.23  Aligned_cols=84  Identities=17%  Similarity=0.131  Sum_probs=57.9

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc----ccC---HHHh-hcCCCEEEEeccCChhhh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF----YAN---VSGL-AADSDVLIVCCALTEETH  214 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~----~~~---l~e~-l~~aDiV~~~lp~~~~t~  214 (286)
                      ..++.|+|+|.+|+.+|+.|...|++|++++++++...     +...    ..+   +.++ +.++|+|++++|....+.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~   86 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAG   86 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHH
Confidence            35799999999999999999999999999999875421     2211    112   2222 578999999999765554


Q ss_pred             hcccHHHHhcCCCCcEEEE
Q 043239          215 HMINKDVMTALGKEGVIIN  233 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn  233 (286)
                      .++  ..+..+.++..+|-
T Consensus        87 ~~~--~~a~~~~~~~~iia  103 (140)
T 3fwz_A           87 EIV--ASARAKNPDIEIIA  103 (140)
T ss_dssp             HHH--HHHHHHCSSSEEEE
T ss_pred             HHH--HHHHHHCCCCeEEE
Confidence            333  24444556655553

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=97.93  E-value=3.1e-05  Score=69.21  Aligned_cols=78  Identities=19%  Similarity=0.397  Sum_probs=64.4

Q ss_pred             cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.++.||++.|||-++ +|+++|..|...|+.|+.....         ..++.+.+++||+|+.++.    ..+++..+.
T Consensus       174 ~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~---------T~dl~~~~~~ADIvV~A~G----~p~~i~~d~  240 (303)
T 4b4u_A          174 NIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSR---------TQNLPELVKQADIIVGAVG----KAELIQKDW  240 (303)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------CSSHHHHHHTCSEEEECSC----STTCBCGGG
T ss_pred             CCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCC---------CCCHHHHhhcCCeEEeccC----CCCcccccc
Confidence            3469999999999776 6999999999999999876532         2479999999999999875    345777654


Q ss_pred             HhcCCCCcEEEEcCC
Q 043239          222 MTALGKEGVIINVGR  236 (286)
Q Consensus       222 l~~mk~g~ilvn~sr  236 (286)
                         +|+|+++||+|-
T Consensus       241 ---vk~GavVIDVGi  252 (303)
T 4b4u_A          241 ---IKQGAVVVDAGF  252 (303)
T ss_dssp             ---SCTTCEEEECCC
T ss_pred             ---ccCCCEEEEece
Confidence               689999999974

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.92  E-value=1.5e-05  Score=70.42  Aligned_cols=105  Identities=12%  Similarity=0.117  Sum_probs=70.6

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------Cc---ccccCHHHhh-cCCCEEEEeccCChhhh
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SY---PFYANVSGLA-ADSDVLIVCCALTEETH  214 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~---~~~~~l~e~l-~~aDiV~~~lp~~~~t~  214 (286)
                      ++.|+++.|+|.|.+|+++++.|...|.+|++++|+.++..      +.   ....+++++. .++|+|+.++|......
T Consensus       116 ~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~~~  195 (271)
T 1nyt_A          116 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISGD  195 (271)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGTC
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCCCC
Confidence            36789999999999999999999999999999999865421      00   0112333433 58999999998654311


Q ss_pred             -hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239          215 -HMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       215 -~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i  254 (286)
                       .-+..   ..++++.+++|+.... ..+. +.++.++..+
T Consensus       196 ~~~i~~---~~l~~~~~v~D~~y~p-~~t~-~~~~a~~~G~  231 (271)
T 1nyt_A          196 IPAIPS---SLIHPGIYCYDMFYQK-GKTP-FLAWCEQRGS  231 (271)
T ss_dssp             CCCCCG---GGCCTTCEEEESCCCS-SCCH-HHHHHHHTTC
T ss_pred             CCCCCH---HHcCCCCEEEEeccCC-cCCH-HHHHHHHcCC
Confidence             01222   2367899999998764 3333 4454454443

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.87  E-value=8.2e-06  Score=63.89  Aligned_cols=91  Identities=14%  Similarity=0.210  Sum_probs=57.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-----CCccc----ccC---HHHh-hcCCCEEEEeccCChh
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPF----YAN---VSGL-AADSDVLIVCCALTEE  212 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~~~~~----~~~---l~e~-l~~aDiV~~~lp~~~~  212 (286)
                      +.+++|+|+|+|.+|+.+++.|...|++|++++++.+..     .+...    ..+   +.++ +.++|+|+.+++...+
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~   83 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ   83 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHH
T ss_pred             CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCchH
Confidence            567789999999999999999999999999998865321     11111    112   2333 6789999999986423


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCc
Q 043239          213 THHMINKDVMTALGKEGVIINVGRGA  238 (286)
Q Consensus       213 t~~~i~~~~l~~mk~g~ilvn~srg~  238 (286)
                      ....+ ......+.+. .+|-.+++.
T Consensus        84 ~~~~~-~~~~~~~~~~-~ii~~~~~~  107 (144)
T 2hmt_A           84 ASTLT-TLLLKELDIP-NIWVKAQNY  107 (144)
T ss_dssp             HHHHH-HHHHHHTTCS-EEEEECCSH
T ss_pred             HHHHH-HHHHHHcCCC-eEEEEeCCH
Confidence            22122 2344556665 455444443

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.86  E-value=3.1e-05  Score=69.02  Aligned_cols=104  Identities=18%  Similarity=0.183  Sum_probs=74.5

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCCC-------------ccc--ccCHHHhhcCCCEEEEecc
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVS-------------YPF--YANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~~-------------~~~--~~~l~e~l~~aDiV~~~lp  208 (286)
                      ++.|+++.|+|.|.+|++++..|...|. +|++++|+.++...             ...  ..++.+.++++|+|+.++|
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp  203 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP  203 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSS
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCC
Confidence            4789999999999999999999999999 79999998764320             111  2378888899999999998


Q ss_pred             CChhhh--hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          209 LTEETH--HMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       209 ~~~~t~--~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      ..-...  ..+.   .+.++++.+++|+.-.. ..+.-|.+|-+.|
T Consensus       204 ~Gm~~~~~~pi~---~~~l~~~~~v~DlvY~P-~~T~ll~~A~~~G  245 (283)
T 3jyo_A          204 MGMPAHPGTAFD---VSCLTKDHWVGDVVYMP-IETELLKAARALG  245 (283)
T ss_dssp             TTSTTSCSCSSC---GGGCCTTCEEEECCCSS-SSCHHHHHHHHHT
T ss_pred             CCCCCCCCCCCC---HHHhCCCCEEEEecCCC-CCCHHHHHHHHCc
Confidence            642211  1233   34578899999997654 3444444554444

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=97.86  E-value=3.7e-05  Score=72.49  Aligned_cols=106  Identities=14%  Similarity=0.220  Sum_probs=77.8

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCC---EEEEEC----CC--CCCC------CCc-----c------cccCHHHh
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGC---SIAYTS----RK--KKPG------VSY-----P------FYANVSGL  196 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~---~V~~~~----r~--~~~~------~~~-----~------~~~~l~e~  196 (286)
                      +.++.++++.|+|.|..|+.+++.|...|.   +|+++|    |+  ..+.      ...     .      ...++.+.
T Consensus       181 g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~  260 (439)
T 2dvm_A          181 GKKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEA  260 (439)
T ss_dssp             TCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHH
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHH
Confidence            345788999999999999999999999998   799999    76  2211      110     0      13468889


Q ss_pred             hcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 043239          197 AADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGS  253 (286)
Q Consensus       197 l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~  253 (286)
                      ++++|+|+.+.|..   .+++.++.++.|+++++++|++...  .+.-+.+|.+.|.
T Consensus       261 l~~aDVlInaT~~~---~G~~~~e~v~~m~~~~iVfDLynP~--~t~~~~~A~~~G~  312 (439)
T 2dvm_A          261 LKDADVLISFTRPG---PGVIKPQWIEKMNEDAIVFPLANPV--PEILPEEAKKAGA  312 (439)
T ss_dssp             HTTCSEEEECSCCC---SSSSCHHHHTTSCTTCEEEECCSSS--CSSCHHHHHHHTC
T ss_pred             hccCCEEEEcCCCc---cCCCChHHHHhcCCCCEEEECCCCC--CcchHHHHHHcCC
Confidence            99999999998742   1456667788899999999996543  4444555555554

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.85  E-value=2.1e-05  Score=71.73  Aligned_cols=111  Identities=14%  Similarity=0.082  Sum_probs=70.6

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCCC-----------------cccccCHHHhhcCCCEEEEec--
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVS-----------------YPFYANVSGLAADSDVLIVCC--  207 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~~-----------------~~~~~~l~e~l~~aDiV~~~l--  207 (286)
                      .++|+|||.|.+|..+|..|...|+ +|..||++.+....                 .....++++.+++||+|++++  
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g~   88 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGL   88 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccCC
Confidence            4689999999999999999998887 99999998753210                 111367888899999999998  


Q ss_pred             cCChhh------hhc-------ccHHH---HhcCCCCcEEEEcCCCcccCHHHHHHHH--HhCCeeEEE
Q 043239          208 ALTEET------HHM-------INKDV---MTALGKEGVIINVGRGALIDEKELVHFL--VRGSLVELV  258 (286)
Q Consensus       208 p~~~~t------~~~-------i~~~~---l~~mk~g~ilvn~srg~~vd~~al~~al--~~~~i~ga~  258 (286)
                      |..+..      +.-       +-++.   +....|.+++++++...=+....+.+.-  ...++.|.+
T Consensus        89 p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~~~t~~~~~~~~~~~~rviG~g  157 (331)
T 1pzg_A           89 TKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVMCEASGVPTNMICGMA  157 (331)
T ss_dssp             SSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECC
T ss_pred             CCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCchHHHHHHHHHhcCCChhcEEecc
Confidence            543221      110       01122   2223578999998655433333333332  233555543

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.82  E-value=3.2e-05  Score=69.19  Aligned_cols=103  Identities=17%  Similarity=0.208  Sum_probs=70.7

Q ss_pred             CCEEEEEcCChHHHH-HHHHhcc-CCCEEE-EECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCChhhhhccc
Q 043239          148 GKRVGIVGLGSIGSE-VAKRLVP-FGCSIA-YTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALTEETHHMIN  218 (286)
Q Consensus       148 g~~vgIiG~G~iG~~-~A~~l~~-~g~~V~-~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~  218 (286)
                      ..+|||||+|.||+. +++.+.. -+++++ +++++.++..      +...+.++++++++.|+|++|+|........  
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~~--   83 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYEII--   83 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHHHH--
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHHHH--
Confidence            368999999999996 8888876 467876 7898776432      3334789999999999999999954332221  


Q ss_pred             HHHHhcCCCCc-EEEE-cCCCcccCHHHHHHHHHhCCee
Q 043239          219 KDVMTALGKEG-VIIN-VGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       219 ~~~l~~mk~g~-ilvn-~srg~~vd~~al~~al~~~~i~  255 (286)
                      ...   ++.|. +++. ...-++-+.+.|.++.++.++.
T Consensus        84 ~~a---l~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~  119 (308)
T 3uuw_A           84 KIL---LNLGVHVYVDKPLASTVSQGEELIELSTKKNLN  119 (308)
T ss_dssp             HHH---HHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCC
T ss_pred             HHH---HHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCE
Confidence            223   33443 5554 2344556677788877776544

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.79  E-value=9.7e-06  Score=63.96  Aligned_cols=86  Identities=12%  Similarity=0.125  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc----cccC---HHHh-hcCCCEEEEeccCChhh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP----FYAN---VSGL-AADSDVLIVCCALTEET  213 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~----~~~~---l~e~-l~~aDiV~~~lp~~~~t  213 (286)
                      .++++.|+|+|.+|+.+|+.|...|++|++++++++...     +..    ...+   +.++ +.++|+|++++|..+.+
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~n   84 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEFN   84 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHHHH
Confidence            457899999999999999999999999999998765321     111    0112   2222 46899999998843332


Q ss_pred             hhcccHHHHhcCCCCcEEEEc
Q 043239          214 HHMINKDVMTALGKEGVIINV  234 (286)
Q Consensus       214 ~~~i~~~~l~~mk~g~ilvn~  234 (286)
                      .  .-......+....+++-+
T Consensus        85 ~--~~~~~a~~~~~~~iia~~  103 (141)
T 3llv_A           85 L--KILKALRSVSDVYAIVRV  103 (141)
T ss_dssp             H--HHHHHHHHHCCCCEEEEE
T ss_pred             H--HHHHHHHHhCCceEEEEE
Confidence            2  223344444444454433

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.78  E-value=1.3e-05  Score=72.20  Aligned_cols=61  Identities=25%  Similarity=0.403  Sum_probs=47.9

Q ss_pred             CEEEEEcCChHHHHHHHHhccCC--CEEEEECCCCCCCC---------------Cccc-ccCHHHhhcCCCEEEEeccCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFG--CSIAYTSRKKKPGV---------------SYPF-YANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g--~~V~~~~r~~~~~~---------------~~~~-~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      ++|+|||.|.||..+|..|...|  .+|..+|++.+...               .... ..++ +.+++||+|++++|..
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~   80 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI   80 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence            58999999999999999998878  68999999764321               0111 2456 6789999999999854

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.78  E-value=4.2e-05  Score=69.20  Aligned_cols=105  Identities=15%  Similarity=0.136  Sum_probs=70.7

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCC---CCC----------C--c--cccc---CHHHhhcCCCEE
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKK---PGV----------S--Y--PFYA---NVSGLAADSDVL  203 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~---~~~----------~--~--~~~~---~l~e~l~~aDiV  203 (286)
                      ++.|+++.|+|.|.+|++++..|...|+ +|++++|+.+   +..          +  .  ....   ++.+.+.++|+|
T Consensus       151 ~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiI  230 (315)
T 3tnl_A          151 DIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIF  230 (315)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEE
T ss_pred             CccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEE
Confidence            5789999999999999999999999999 8999999832   211          0  0  1122   245677899999


Q ss_pred             EEeccCChhhh---hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          204 IVCCALTEETH---HMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       204 ~~~lp~~~~t~---~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      |.++|..-...   ..+.  ....++++.+++|+.-... .+.=|.+|-+.|
T Consensus       231 INaTp~Gm~~~~~~~p~~--~~~~l~~~~~V~DlvY~P~-~T~ll~~A~~~G  279 (315)
T 3tnl_A          231 TNATGVGMKPFEGETLLP--SADMLRPELIVSDVVYKPT-KTRLLEIAEEQG  279 (315)
T ss_dssp             EECSSTTSTTSTTCCSCC--CGGGCCTTCEEEESCCSSS-SCHHHHHHHHTT
T ss_pred             EECccCCCCCCCCCCCCC--cHHHcCCCCEEEEeccCCC-CCHHHHHHHHCC
Confidence            99998542111   1121  2334688999999976543 444444444433

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=97.78  E-value=1.7e-05  Score=75.03  Aligned_cols=101  Identities=12%  Similarity=0.103  Sum_probs=70.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC------------CC-------------cccccCHHHhhcCCC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG------------VS-------------YPFYANVSGLAADSD  201 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~------------~~-------------~~~~~~l~e~l~~aD  201 (286)
                      +-.+|+|||+|-+|..+|..|...|++|+++|.++++.            .+             .....+.++.+++||
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad   99 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATD   99 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCC
Confidence            45689999999999999999999999999999775431            01             112357788899999


Q ss_pred             EEEEeccCChh------hhhcc--cHHHHhcCC---CCcEEEEcCCCcccCHHHHHH
Q 043239          202 VLIVCCALTEE------THHMI--NKDVMTALG---KEGVIINVGRGALIDEKELVH  247 (286)
Q Consensus       202 iV~~~lp~~~~------t~~~i--~~~~l~~mk---~g~ilvn~srg~~vd~~al~~  247 (286)
                      ++++|+|....      ...+.  .+...+.|+   +|.++|.-|+-.+=.++.+..
T Consensus       100 ~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~  156 (444)
T 3vtf_A          100 ATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVA  156 (444)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHH
T ss_pred             ceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHH
Confidence            99999983211      11111  122334454   678999999887766655543

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.75  E-value=8.2e-05  Score=66.85  Aligned_cols=103  Identities=25%  Similarity=0.312  Sum_probs=70.4

Q ss_pred             CEEEEEcCChHHHH-HHHHhcc-CCCEEE-EECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239          149 KRVGIVGLGSIGSE-VAKRLVP-FGCSIA-YTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       149 ~~vgIiG~G~iG~~-~A~~l~~-~g~~V~-~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      .+|||||+|.||+. +++.+.. -+++++ +++++.+...      +...+.+++++..++|+|++++|.......    
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~~~----   81 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDV----   81 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHH----
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHHHH----
Confidence            58999999999997 8888765 367765 8898876532      233456777776789999999995433221    


Q ss_pred             HHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHhCCeeE
Q 043239          220 DVMTALGKEG-VIINV-GRGALIDEKELVHFLVRGSLVE  256 (286)
Q Consensus       220 ~~l~~mk~g~-ilvn~-srg~~vd~~al~~al~~~~i~g  256 (286)
                       ....++.|. +++.- ...++-+.+.|.++.++.++..
T Consensus        82 -~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~  119 (319)
T 1tlt_A           82 -VSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTL  119 (319)
T ss_dssp             -HHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             -HHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence             222344564 66653 3345566778888888876653

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.74  E-value=2.8e-05  Score=69.30  Aligned_cols=103  Identities=15%  Similarity=0.241  Sum_probs=70.6

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC----Cc--ccccCHHHhhcCCCEEEEeccCC--hhhh-
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV----SY--PFYANVSGLAADSDVLIVCCALT--EETH-  214 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~----~~--~~~~~l~e~l~~aDiV~~~lp~~--~~t~-  214 (286)
                      ++.|+++.|+|.|.+|++++..|...|+ +|++++|+.++..    ..  ..+.++.+ + ++|+||+++|..  +... 
T Consensus       119 ~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~~  196 (282)
T 3fbt_A          119 EIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKEGE  196 (282)
T ss_dssp             CCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTSTTC
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCCcc
Confidence            4789999999999999999999999998 8999999876532    11  11233444 4 899999999864  2111 


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239          215 HMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i  254 (286)
                      ..+..+.   ++++.+++|+.-.. ..+. |+++.++.++
T Consensus       197 ~pi~~~~---l~~~~~v~DlvY~P-~~T~-ll~~A~~~G~  231 (282)
T 3fbt_A          197 SPVDKEV---VAKFSSAVDLIYNP-VETL-FLKYARESGV  231 (282)
T ss_dssp             CSSCHHH---HTTCSEEEESCCSS-SSCH-HHHHHHHTTC
T ss_pred             CCCCHHH---cCCCCEEEEEeeCC-CCCH-HHHHHHHCcC
Confidence            1244444   46889999997544 2333 4444444443

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.74  E-value=9.4e-06  Score=72.33  Aligned_cols=105  Identities=14%  Similarity=0.149  Sum_probs=71.6

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCcc---------------cccCHHHhhcCCCEEEEeccC
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYP---------------FYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~---------------~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      ++.|+++.|+|.|.||+++|+.|...| +|++++|+.++.....               ...++.+.+.++|+|+++.|.
T Consensus       125 ~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag~  203 (287)
T 1nvt_A          125 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPI  203 (287)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCT
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCCC
Confidence            367899999999999999999999999 9999999764321100               112224567889999999886


Q ss_pred             Chhhh---hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239          210 TEETH---HMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       210 ~~~t~---~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i  254 (286)
                      .....   ..+.  ..+.++++.+++|+.... ..+ .+++..++.++
T Consensus       204 ~~~~~~~~~~~~--~~~~l~~~~~v~Dv~y~p-~~t-~ll~~a~~~G~  247 (287)
T 1nvt_A          204 GMYPNIDVEPIV--KAEKLREDMVVMDLIYNP-LET-VLLKEAKKVNA  247 (287)
T ss_dssp             TCTTCCSSCCSS--CSTTCCSSSEEEECCCSS-SSC-HHHHHHHTTTC
T ss_pred             CCCCCCCCCCCC--CHHHcCCCCEEEEeeeCC-ccC-HHHHHHHHCCC
Confidence            53211   0120  134678999999998743 333 35555555544

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.70  E-value=6.3e-05  Score=68.39  Aligned_cols=108  Identities=15%  Similarity=0.092  Sum_probs=68.1

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCCC-----------------cccccCHHHhhcCCCEEEEec--c
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVS-----------------YPFYANVSGLAADSDVLIVCC--A  208 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~~-----------------~~~~~~l~e~l~~aDiV~~~l--p  208 (286)
                      ++|+|||.|.||..+|..+...|+ +|..+|++.+...+                 .....++ +.+++||+|++++  |
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg~p   93 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAGVP   93 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCCCC
Confidence            689999999999999999998898 99999998754221                 1112466 7789999999998  4


Q ss_pred             CChh---------hhhcc---cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH--HhCCeeEEE
Q 043239          209 LTEE---------THHMI---NKDVMTALGKEGVIINVGRGALIDEKELVHFL--VRGSLVELV  258 (286)
Q Consensus       209 ~~~~---------t~~~i---~~~~l~~mk~g~ilvn~srg~~vd~~al~~al--~~~~i~ga~  258 (286)
                      ..+.         +..++   .++.-+. .|++++++++...-+....+.+.-  ...++.|.+
T Consensus        94 ~k~g~tr~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~t~~~~~~~~~~~~rviG~~  156 (328)
T 2hjr_A           94 RKPNMTRSDLLTVNAKIVGSVAENVGKY-CPNAFVICITNPLDAMVYYFKEKSGIPANKVCGMS  156 (328)
T ss_dssp             CCTTCCSGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEESC
T ss_pred             CCCCCchhhHHhhhHHHHHHHHHHHHHH-CCCeEEEEecCchHHHHHHHHHhcCCChhhEEEeC
Confidence            3211         11111   1222222 478999888654322233332322  345666653

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.70  E-value=5.1e-05  Score=68.62  Aligned_cols=101  Identities=12%  Similarity=0.181  Sum_probs=67.0

Q ss_pred             CEEEEEcCChHHHHHHHHhccC-CCEEE-EECCCCCCCC------CcccccCHHHhhc--CCCEEEEeccCChhhhhccc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF-GCSIA-YTSRKKKPGV------SYPFYANVSGLAA--DSDVLIVCCALTEETHHMIN  218 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~-g~~V~-~~~r~~~~~~------~~~~~~~l~e~l~--~aDiV~~~lp~~~~t~~~i~  218 (286)
                      .+|||||+|.||+.+++.+... +++++ ++|++.+...      +.. +.+++++++  +.|+|++|+|........  
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~~~--   80 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTHADLI--   80 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGHHHHH--
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhHHHHH--
Confidence            5899999999999999999875 77876 6888765421      334 789999998  799999999854332221  


Q ss_pred             HHHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHhCCee
Q 043239          219 KDVMTALGKE-GVIINVG-RGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       219 ~~~l~~mk~g-~ilvn~s-rg~~vd~~al~~al~~~~i~  255 (286)
                      ...   ++.| .+++.-- .-++-+.+.|.++.++.++.
T Consensus        81 ~~a---l~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~  116 (331)
T 4hkt_A           81 ERF---ARAGKAIFCEKPIDLDAERVRACLKVVSDTKAK  116 (331)
T ss_dssp             HHH---HHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             HHH---HHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCe
Confidence            222   2333 2444322 33445556666666665543

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=97.70  E-value=9.7e-05  Score=64.39  Aligned_cols=81  Identities=16%  Similarity=0.237  Sum_probs=56.5

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEE-EECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIA-YTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGK  227 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~-~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~  227 (286)
                      ++|+|+|+|.||+.+++.+...+.++. +++++.....++..+.++++++ ++|+++-+.+. ..+.     +.+. ++.
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~~~gv~v~~dl~~l~-~~DVvIDft~p-~a~~-----~~~~-l~~   75 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVK-GADVAIDFSNP-NLLF-----PLLD-EDF   75 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC--CCSCBCSCTTTCT-TCSEEEECSCH-HHHH-----HHHT-SCC
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccccCCCceeCCHHHHh-CCCEEEEeCCh-HHHH-----HHHH-Hhc
Confidence            589999999999999999987765765 4788776555566678888888 99998744321 1222     2333 677


Q ss_pred             CcEEEEcCCC
Q 043239          228 EGVIINVGRG  237 (286)
Q Consensus       228 g~ilvn~srg  237 (286)
                      |.-+|....|
T Consensus        76 g~~vVigTTG   85 (243)
T 3qy9_A           76 HLPLVVATTG   85 (243)
T ss_dssp             CCCEEECCCS
T ss_pred             CCceEeCCCC
Confidence            7666655566

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.69  E-value=5.5e-05  Score=68.76  Aligned_cols=101  Identities=11%  Similarity=0.088  Sum_probs=66.5

Q ss_pred             CEEEEEcCChHHHHHHHHhccC-CCEEE-EECCCCCCC------CCcccccCHHHhhc--CCCEEEEeccCChhhhhccc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF-GCSIA-YTSRKKKPG------VSYPFYANVSGLAA--DSDVLIVCCALTEETHHMIN  218 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~-g~~V~-~~~r~~~~~------~~~~~~~~l~e~l~--~aDiV~~~lp~~~~t~~~i~  218 (286)
                      .+|||||+|.||+.+++.+... +++++ +++++.+..      .+...+.+++++++  +.|+|++|+|........  
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~--   82 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTHVDLI--   82 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGHHHHH--
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhhHHHH--
Confidence            5899999999999999999876 67766 788876542      13445789999998  899999999854332221  


Q ss_pred             HHHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHhCCe
Q 043239          219 KDVMTALGKE-GVIINVG-RGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       219 ~~~l~~mk~g-~ilvn~s-rg~~vd~~al~~al~~~~i  254 (286)
                      ...+   +.| .+++.-- .-.+-+.+.|.++.++.++
T Consensus        83 ~~al---~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~  117 (344)
T 3euw_A           83 TRAV---ERGIPALCEKPIDLDIEMVRACKEKIGDGAS  117 (344)
T ss_dssp             HHHH---HTTCCEEECSCSCSCHHHHHHHHHHHGGGGG
T ss_pred             HHHH---HcCCcEEEECCCCCCHHHHHHHHHHHHhcCC
Confidence            2222   233 3554432 2333455556665555444

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.68  E-value=5.4e-05  Score=69.12  Aligned_cols=100  Identities=12%  Similarity=0.135  Sum_probs=65.7

Q ss_pred             CEEEEEcCChHHHHHHHHhccC-CCEEE-EECCCCCCCC------CcccccCHHHhh--cCCCEEEEeccCChhhhhccc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF-GCSIA-YTSRKKKPGV------SYPFYANVSGLA--ADSDVLIVCCALTEETHHMIN  218 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~-g~~V~-~~~r~~~~~~------~~~~~~~l~e~l--~~aDiV~~~lp~~~~t~~~i~  218 (286)
                      .+|||||+|.||+.+++.++.. +++++ ++|++.+...      +...+.++++++  .+.|+|++|+|........  
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~--   83 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHAEVI--   83 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHHHHH--
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHHHHHH--
Confidence            5899999999999999999987 77865 7888765432      344578999999  5699999999965433221  


Q ss_pred             HHHHhcCCCCc-EEEEcC-CCcccCHHHHHHHHHhCC
Q 043239          219 KDVMTALGKEG-VIINVG-RGALIDEKELVHFLVRGS  253 (286)
Q Consensus       219 ~~~l~~mk~g~-ilvn~s-rg~~vd~~al~~al~~~~  253 (286)
                      ...   ++.|. +++.-- .-++-+.+.|.++.++.+
T Consensus        84 ~~a---l~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~  117 (354)
T 3db2_A           84 EQC---ARSGKHIYVEKPISVSLDHAQRIDQVIKETG  117 (354)
T ss_dssp             HHH---HHTTCEEEEESSSCSSHHHHHHHHHHHHHHC
T ss_pred             HHH---HHcCCEEEEccCCCCCHHHHHHHHHHHHHcC
Confidence            122   33332 444432 233344555555555433

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=97.67  E-value=0.00019  Score=62.79  Aligned_cols=101  Identities=15%  Similarity=0.182  Sum_probs=71.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEE-EEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhc
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSI-AYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTA  224 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V-~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~  224 (286)
                      -+.++|+++|+|.||+.+++.  . ++++ .+|+ ......+.....+++++++++|+|+=|.+ .+    -+.+.....
T Consensus        10 ~~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~-~k~gelgv~a~~d~d~lla~pD~VVe~A~-~~----av~e~~~~i   80 (253)
T 1j5p_A           10 HHHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD-RISKDIPGVVRLDEFQVPSDVSTVVECAS-PE----AVKEYSLQI   80 (253)
T ss_dssp             -CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC-SSCCCCSSSEECSSCCCCTTCCEEEECSC-HH----HHHHHHHHH
T ss_pred             cccceEEEECcCHHHHHHHhc--C-CcEEEEEEe-ccccccCceeeCCHHHHhhCCCEEEECCC-HH----HHHHHHHHH
Confidence            357899999999999999998  3 7775 4666 21111144446789999889999977753 22    233345666


Q ss_pred             CCCCcEEEEcCCCcccCH---HHHHHHHHhCCee
Q 043239          225 LGKEGVIINVGRGALIDE---KELVHFLVRGSLV  255 (286)
Q Consensus       225 mk~g~ilvn~srg~~vd~---~al~~al~~~~i~  255 (286)
                      |+.|.-+|-+|-|.+.|.   +.|.++.++|+-+
T Consensus        81 L~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~  114 (253)
T 1j5p_A           81 LKNPVNYIIISTSAFADEVFRERFFSELKNSPAR  114 (253)
T ss_dssp             TTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCE
T ss_pred             HHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCe
Confidence            889999999999988887   5666677776654

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.66  E-value=2.7e-05  Score=69.96  Aligned_cols=101  Identities=21%  Similarity=0.375  Sum_probs=63.9

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccccc---------cCH-HHhhcCCCEEEEeccCChhh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFY---------ANV-SGLAADSDVLIVCCALTEET  213 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~---------~~l-~e~l~~aDiV~~~lp~~~~t  213 (286)
                      ++|+|||.|.||..+|..|. .|.+|.+++|+.+...     +....         .+. .+....+|+|++++|.. ++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~-~~   80 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQH-QL   80 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCGG-GH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCHH-HH
Confidence            68999999999999999999 8999999999864311     11100         000 24567899999999843 34


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          214 HHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       214 ~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      ..++  +.+..+.++. +|.+..|=- .++.+.+.+...++.
T Consensus        81 ~~~l--~~l~~~~~~~-ivs~~nGi~-~~e~l~~~~~~~~vl  118 (307)
T 3ego_A           81 QSVF--SSLERIGKTN-ILFLQNGMG-HIHDLKDWHVGHSIY  118 (307)
T ss_dssp             HHHH--HHTTSSCCCE-EEECCSSSH-HHHHHHTCCCSCEEE
T ss_pred             HHHH--HHhhcCCCCe-EEEecCCcc-HHHHHHHhCCCCcEE
Confidence            4333  2233345566 888877732 223344444444443

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=97.65  E-value=3.5e-05  Score=69.78  Aligned_cols=107  Identities=20%  Similarity=0.275  Sum_probs=67.4

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCCC--------------cc-cccCHHHhhcCCCEEEEeccCCh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGVS--------------YP-FYANVSGLAADSDVLIVCCALTE  211 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~~--------------~~-~~~~l~e~l~~aDiV~~~lp~~~  211 (286)
                      ++|+|||.|.||..+|..|...|+  +|..+|++.+....              .. ...+ .+.+++||+|++++|...
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~   79 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ   79 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence            489999999999999999998888  99999997543211              01 1124 356789999999998543


Q ss_pred             hh---h--------hcccHHHHhcC---CCCcEEEEcCCCcccCHHHHHHHH--HhCCeeEE
Q 043239          212 ET---H--------HMINKDVMTAL---GKEGVIINVGRGALIDEKELVHFL--VRGSLVEL  257 (286)
Q Consensus       212 ~t---~--------~~i~~~~l~~m---k~g~ilvn~srg~~vd~~al~~al--~~~~i~ga  257 (286)
                      ..   +        .++ ++.+..+   .|++++|+++.+.-+.+..+.+..  ...++.|.
T Consensus        80 ~~g~~r~dl~~~n~~i~-~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~~~~~~~~~~rviG~  140 (319)
T 1a5z_A           80 KPGETRLQLLGRNARVM-KEIARNVSKYAPDSIVIVVTNPVDVLTYFFLKESGMDPRKVFGS  140 (319)
T ss_dssp             CSSCCHHHHHHHHHHHH-HHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             CCCCCHHHHHHHHHHHH-HHHHHHHHhhCCCeEEEEeCCcHHHHHHHHHHHhCCChhhEEee
Confidence            10   0        111 2222222   578888888665433333333332  34456554

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.64  E-value=4.8e-05  Score=69.48  Aligned_cols=63  Identities=17%  Similarity=0.168  Sum_probs=51.2

Q ss_pred             CCEEEEEcCChHHHHHHHHhccC--CCEEE-EECCCCCCCC------CcccccCHHHhhc--CCCEEEEeccCC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPF--GCSIA-YTSRKKKPGV------SYPFYANVSGLAA--DSDVLIVCCALT  210 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~--g~~V~-~~~r~~~~~~------~~~~~~~l~e~l~--~aDiV~~~lp~~  210 (286)
                      ..+|||||+|.||+..++.+...  +++++ ++|++.++..      +...+.+++++++  +.|+|++|+|..
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~   86 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSG   86 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGG
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcH
Confidence            46899999999999999999876  77865 7888765432      3445789999997  799999999954

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.63  E-value=8.3e-05  Score=67.44  Aligned_cols=58  Identities=22%  Similarity=0.200  Sum_probs=46.7

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC---------------C--cccccCHHHhhcCCCEEEEec
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV---------------S--YPFYANVSGLAADSDVLIVCC  207 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~---------------~--~~~~~~l~e~l~~aDiV~~~l  207 (286)
                      ++|+|||.|.||..+|..+...|+ +|..+|++.+...               .  .....+. +.+++||+|++++
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~   80 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTA   80 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeC
Confidence            589999999999999999998888 8999998765321               1  1112566 7789999999998

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.63  E-value=6.6e-05  Score=67.70  Aligned_cols=102  Identities=20%  Similarity=0.238  Sum_probs=65.4

Q ss_pred             CEEEEEcCChHHHHH-HHHhccCCCEEE-EECCCCCCCC------Cc-ccccCHHHhhc--CCCEEEEeccCChhhhhcc
Q 043239          149 KRVGIVGLGSIGSEV-AKRLVPFGCSIA-YTSRKKKPGV------SY-PFYANVSGLAA--DSDVLIVCCALTEETHHMI  217 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~-A~~l~~~g~~V~-~~~r~~~~~~------~~-~~~~~l~e~l~--~aDiV~~~lp~~~~t~~~i  217 (286)
                      .+|||||+|.||+.+ ++.+...+++++ +++++.++..      +. ..+.+++++++  ++|+|++++|......   
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~---   77 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHRE---   77 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHH---
T ss_pred             CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHH---
Confidence            379999999999998 777766678865 7888765421      22 24678999987  4999999998443221   


Q ss_pred             cHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHhCCee
Q 043239          218 NKDVMTALGKEG-VIINV-GRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       218 ~~~~l~~mk~g~-ilvn~-srg~~vd~~al~~al~~~~i~  255 (286)
                        .....++.|. +++.- ...+.-+.+.|.++.++.++.
T Consensus        78 --~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~  115 (332)
T 2glx_A           78 --QTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVV  115 (332)
T ss_dssp             --HHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCC
T ss_pred             --HHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCE
Confidence              1222344554 55542 223444556666666655444

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.62  E-value=3.6e-05  Score=69.18  Aligned_cols=102  Identities=10%  Similarity=0.206  Sum_probs=68.6

Q ss_pred             CEEEEEcCChHHHHHHHHhccC-CCEE-EEECCCCCCCC----CcccccCHHHhhc--CCCEEEEeccCChhhhhcccHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF-GCSI-AYTSRKKKPGV----SYPFYANVSGLAA--DSDVLIVCCALTEETHHMINKD  220 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~-g~~V-~~~~r~~~~~~----~~~~~~~l~e~l~--~aDiV~~~lp~~~~t~~~i~~~  220 (286)
                      .+|||||+|.||+.+++.+... ++++ .+++++.++..    ....+.+++++++  ++|+|++++|......     -
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~-----~   85 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPGCVIESDWRSVVSAPEVEAVIIATPPATHAE-----I   85 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTTCEEESSTHHHHTCTTCCEEEEESCGGGHHH-----H
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhhCcccCCHHHHhhCCCCCEEEEeCChHHHHH-----H
Confidence            5899999999999999999875 5675 47888764322    1234678899985  7999999998543222     1


Q ss_pred             HHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHhCCee
Q 043239          221 VMTALGKEG-VIINV-GRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       221 ~l~~mk~g~-ilvn~-srg~~vd~~al~~al~~~~i~  255 (286)
                      ....++.|. +++.- ..-++-+.+.|.++.++.++.
T Consensus        86 ~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~  122 (315)
T 3c1a_A           86 TLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVM  122 (315)
T ss_dssp             HHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCE
Confidence            223345564 66662 233455667788877765554

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=97.61  E-value=0.00023  Score=64.27  Aligned_cols=103  Identities=16%  Similarity=0.158  Sum_probs=65.6

Q ss_pred             CCEEEEEcCChHHHHHHHHhccC-CCEEE-EECCCCCCCC------Cc-ccccCHHHhhc--CCCEEEEeccCChhhhhc
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPF-GCSIA-YTSRKKKPGV------SY-PFYANVSGLAA--DSDVLIVCCALTEETHHM  216 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~-g~~V~-~~~r~~~~~~------~~-~~~~~l~e~l~--~aDiV~~~lp~~~~t~~~  216 (286)
                      -.+|||||+|.||+.+++.++.. +++++ +++++.++..      +. ..+.+++++++  +.|+|++++|....... 
T Consensus         5 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~-   83 (329)
T 3evn_A            5 KVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYKV-   83 (329)
T ss_dssp             CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGHHHH-
T ss_pred             ceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHHH-
Confidence            35899999999999999988765 45654 6788876543      22 24689999998  79999999985433221 


Q ss_pred             ccHHHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHhCCee
Q 043239          217 INKDVMTALGKE-GVIINVG-RGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       217 i~~~~l~~mk~g-~ilvn~s-rg~~vd~~al~~al~~~~i~  255 (286)
                          ....++.| .+++.-- .-++-+.+.|.++.++.++.
T Consensus        84 ----~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~  120 (329)
T 3evn_A           84 ----AKAALLAGKHVLVEKPFTLTYDQANELFALAESCNLF  120 (329)
T ss_dssp             ----HHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCC
T ss_pred             ----HHHHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcCCE
Confidence                11223333 2444322 23344555566666555443

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.58  E-value=7.5e-05  Score=67.27  Aligned_cols=60  Identities=18%  Similarity=0.316  Sum_probs=46.7

Q ss_pred             CEEEEEcCChHHHHHHHHhcc--CCCEEEEECCCCCCCCC-----------------cccccCHHHhhcCCCEEEEeccC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVP--FGCSIAYTSRKKKPGVS-----------------YPFYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~--~g~~V~~~~r~~~~~~~-----------------~~~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      ++|+|||.|.||..+|..|..  .|.+|..+|++.+...+                 .....+.++ +++||+|++++|.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~   79 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL   79 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence            489999999999999999986  47899999998653210                 111246666 8999999999974

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.57  E-value=0.00012  Score=66.15  Aligned_cols=103  Identities=15%  Similarity=0.131  Sum_probs=67.9

Q ss_pred             CCEEEEEcCChHHHHHHHHhccC-CCEEE-EECCCCCCCC------Cc-ccccCHHHhhc--CCCEEEEeccCChhhhhc
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPF-GCSIA-YTSRKKKPGV------SY-PFYANVSGLAA--DSDVLIVCCALTEETHHM  216 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~-g~~V~-~~~r~~~~~~------~~-~~~~~l~e~l~--~aDiV~~~lp~~~~t~~~  216 (286)
                      ..+|||||+|.||+.+++.++.. +++|+ +++++.++..      +. ..+.+++++++  +.|+|++++|........
T Consensus         5 ~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~   84 (330)
T 3e9m_A            5 KIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHYSAA   84 (330)
T ss_dssp             CEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGHHHHH
T ss_pred             eEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHHHHHH
Confidence            35899999999999999999875 66776 6788765422      33 35789999997  799999999955332211


Q ss_pred             ccHHHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHhCCee
Q 043239          217 INKDVMTALGKE-GVIINVG-RGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       217 i~~~~l~~mk~g-~ilvn~s-rg~~vd~~al~~al~~~~i~  255 (286)
                        ...   ++.| .+++.-- .-++-+.+.|.++.++.++.
T Consensus        85 --~~a---l~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~  120 (330)
T 3e9m_A           85 --KLA---LSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVF  120 (330)
T ss_dssp             --HHH---HHTTCCEEECSSCCSSHHHHHHHHHHHHHTTCC
T ss_pred             --HHH---HHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence              222   2333 3454432 33445556666666665543

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.57  E-value=5.4e-05  Score=68.07  Aligned_cols=107  Identities=17%  Similarity=0.258  Sum_probs=68.1

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC--------C------ccc-ccCHHHhhcCCCEEEEeccCCh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV--------S------YPF-YANVSGLAADSDVLIVCCALTE  211 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~--------~------~~~-~~~l~e~l~~aDiV~~~lp~~~  211 (286)
                      ++|+|||.|.||..+|..|...|+  +|..+|++.+...        .      ... ..+ .+.+++||+|+++++...
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi~~~~~~   79 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVILTAGANQ   79 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEECC----
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEEcCCCCC
Confidence            489999999999999999998898  9999998764211        0      011 123 357899999999985322


Q ss_pred             h-----------hhhcccHH---HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEE
Q 043239          212 E-----------THHMINKD---VMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVEL  257 (286)
Q Consensus       212 ~-----------t~~~i~~~---~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga  257 (286)
                      .           +..++ ++   .+....|++++++++.+.-+....+.+.....++.|.
T Consensus        80 ~~g~~r~dl~~~n~~i~-~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG~  138 (304)
T 2v6b_A           80 KPGESRLDLLEKNADIF-RELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGS  138 (304)
T ss_dssp             --------CHHHHHHHH-HHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHSCSSCEEEC
T ss_pred             CCCCcHHHHHHhHHHHH-HHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhCChhcEEeC
Confidence            1           11111 11   2222358899999877654545555555555566544

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.57  E-value=0.00013  Score=66.30  Aligned_cols=101  Identities=17%  Similarity=0.267  Sum_probs=66.3

Q ss_pred             CEEEEEcCChHHHHHHHHhccC-CCEEE-EECCCCCCCC------Cc-ccccCHHHhhc--CCCEEEEeccCChhhhhcc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF-GCSIA-YTSRKKKPGV------SY-PFYANVSGLAA--DSDVLIVCCALTEETHHMI  217 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~-g~~V~-~~~r~~~~~~------~~-~~~~~l~e~l~--~aDiV~~~lp~~~~t~~~i  217 (286)
                      .+|||||+|.||+.+++.+... +++++ ++|++.+...      +. ..+.+++++++  ++|+|++|+|........ 
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~-   81 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTHSELV-   81 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGHHHHH-
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcchHHHH-
Confidence            4899999999999999999875 67765 6888765432      22 25789999998  799999999854332211 


Q ss_pred             cHHHHhcCCCCc-EEEEcC-CCcccCHHHHHHHHHhCCe
Q 043239          218 NKDVMTALGKEG-VIINVG-RGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       218 ~~~~l~~mk~g~-ilvn~s-rg~~vd~~al~~al~~~~i  254 (286)
                       ...   ++.|. +++.-- .-++-+.+.|.++.++.++
T Consensus        82 -~~a---l~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~  116 (344)
T 3ezy_A           82 -IAC---AKAKKHVFCEKPLSLNLADVDRMIEETKKADV  116 (344)
T ss_dssp             -HHH---HHTTCEEEEESCSCSCHHHHHHHHHHHHHHTC
T ss_pred             -HHH---HhcCCeEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence             222   33343 555432 3344455666666655443

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.56  E-value=0.00012  Score=64.87  Aligned_cols=102  Identities=14%  Similarity=0.257  Sum_probs=69.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCChhhh-----
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALTEETH-----  214 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~-----  214 (286)
                      .++++.|+|.|.+|++++..|...|+ +|++++|+.++..      +.....++.  +.++|+|++++|......     
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm~~~~~~~~  195 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMD  195 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCccCccccCC
Confidence            46789999999999999999999998 7999999865432      111111222  468999999999653211     


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          215 HMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      ..+..+.   ++++.+++|+.-.. .++ .|+++.++.++.
T Consensus       196 ~~~~~~~---l~~~~~v~DlvY~P-~~T-~ll~~A~~~G~~  231 (271)
T 1npy_A          196 LAFPKAF---IDNASVAFDVVAMP-VET-PFIRYAQARGKQ  231 (271)
T ss_dssp             CSSCHHH---HHHCSEEEECCCSS-SSC-HHHHHHHHTTCE
T ss_pred             CCCCHHH---cCCCCEEEEeecCC-CCC-HHHHHHHHCCCE
Confidence            1133333   35688999998744 344 566666665554

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.54  E-value=0.00013  Score=65.72  Aligned_cols=102  Identities=11%  Similarity=0.132  Sum_probs=65.6

Q ss_pred             CEEEEEcCChHHH-HHHHHhccC-CCEEEEECCCCCCCC------Cccc-ccCHHHhh-cCCCEEEEeccCChhhhhccc
Q 043239          149 KRVGIVGLGSIGS-EVAKRLVPF-GCSIAYTSRKKKPGV------SYPF-YANVSGLA-ADSDVLIVCCALTEETHHMIN  218 (286)
Q Consensus       149 ~~vgIiG~G~iG~-~~A~~l~~~-g~~V~~~~r~~~~~~------~~~~-~~~l~e~l-~~aDiV~~~lp~~~~t~~~i~  218 (286)
                      .+|||||+|.||+ .+++.+... ++++++++++.++..      +... +.+..+++ .++|+|++++|...... +  
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~~-~--   79 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHST-L--   79 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHH-H--
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHHH-H--
Confidence            4899999999999 499988765 678778998765421      2222 33445556 68999999998432211 1  


Q ss_pred             HHHHhcCCCC-cEEEEc-CCCcccCHHHHHHHHHhCCee
Q 043239          219 KDVMTALGKE-GVIINV-GRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       219 ~~~l~~mk~g-~ilvn~-srg~~vd~~al~~al~~~~i~  255 (286)
                        ....++.| .+++.- ..-++-+.+.|.++.++.++.
T Consensus        80 --~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~  116 (323)
T 1xea_A           80 --AAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP  116 (323)
T ss_dssp             --HHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             --HHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCe
Confidence              12234445 366653 223445667788887776655

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=97.52  E-value=0.00025  Score=64.12  Aligned_cols=100  Identities=19%  Similarity=0.233  Sum_probs=66.1

Q ss_pred             CEEEEEcCChHHHHHHHHhccC-CCEE-EEECCCCCCCC--CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF-GCSI-AYTSRKKKPGV--SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTA  224 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~-g~~V-~~~~r~~~~~~--~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~  224 (286)
                      .+|+|||+|+||+.+++.+... ++++ .+++++.....  +...+.++++++.++|+|++++|.....     +.....
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~~~~~gv~~~~d~~~ll~~~DvViiatp~~~h~-----~~~~~a   78 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMGSATDI-----PEQAPK   78 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTTTCSEEEECSCTTTHH-----HHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHHhhcCCCceeCCHHHHhcCCCEEEEcCCcHHHH-----HHHHHH
Confidence            4899999999999999999876 5675 47787754421  2223467888888899999999854221     223445


Q ss_pred             CCCCcEEEEcCCCcc--cCH-HHHHHHHHhCC
Q 043239          225 LGKEGVIINVGRGAL--IDE-KELVHFLVRGS  253 (286)
Q Consensus       225 mk~g~ilvn~srg~~--vd~-~al~~al~~~~  253 (286)
                      ++.|.-+|...-..+  -+. +.|.++.+++.
T Consensus        79 l~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~  110 (320)
T 1f06_A           79 FAQFACTVDTYDNHRDIPRHRQVMNEAATAAG  110 (320)
T ss_dssp             HTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             HHCCCEEEECCCCcCCHHHHHHHHHHHHHhCC
Confidence            666776665544332  223 45666666654

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=97.52  E-value=0.00017  Score=56.12  Aligned_cols=102  Identities=20%  Similarity=0.256  Sum_probs=75.8

Q ss_pred             CEEEEEcC----ChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhc
Q 043239          149 KRVGIVGL----GSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTA  224 (286)
Q Consensus       149 ~~vgIiG~----G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~  224 (286)
                      ++|+|||.    |..|..+.+.|+..|++|+-.++......+...+.++.++-. -|++++++|. +.+..++.+ ... 
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~-vDlavi~~p~-~~v~~~v~e-~~~-   80 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEG-VDTVTLYINP-QNQLSEYNY-ILS-   80 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTT-CCEEEECSCH-HHHGGGHHH-HHH-
T ss_pred             CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCC-CCEEEEEeCH-HHHHHHHHH-HHh-
Confidence            58999997    568999999999999999999988766667667788888877 9999999983 455555543 322 


Q ss_pred             CCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEE
Q 043239          225 LGKEGVIINVGRGALIDEKELVHFLVRGSLVELV  258 (286)
Q Consensus       225 mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~  258 (286)
                      +...+++++.+.    .++++.+.+++..++-..
T Consensus        81 ~g~k~v~~~~G~----~~~e~~~~a~~~Girvv~  110 (122)
T 3ff4_A           81 LKPKRVIFNPGT----ENEELEEILSENGIEPVI  110 (122)
T ss_dssp             HCCSEEEECTTC----CCHHHHHHHHHTTCEEEE
T ss_pred             cCCCEEEECCCC----ChHHHHHHHHHcCCeEEC
Confidence            334466665432    357888888888887543

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=97.51  E-value=0.00033  Score=62.45  Aligned_cols=105  Identities=17%  Similarity=0.253  Sum_probs=70.9

Q ss_pred             CCEEEEEcC-ChHHHHHHHHhccCCCEEE-EECCCCC--CCCCcccccCHHHhhc--CCCEEEEeccCChhhhhcccHHH
Q 043239          148 GKRVGIVGL-GSIGSEVAKRLVPFGCSIA-YTSRKKK--PGVSYPFYANVSGLAA--DSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       148 g~~vgIiG~-G~iG~~~A~~l~~~g~~V~-~~~r~~~--~~~~~~~~~~l~e~l~--~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      ..+|+|+|+ |.||+.+++.+...|++++ .+++...  ...+...+.+++++..  ..|++++++|.. .....+. +.
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~~~~G~~vy~sl~el~~~~~~D~viI~tP~~-~~~~~~~-ea   84 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAP-FCKDSIL-EA   84 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCGG-GHHHHHH-HH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccceeCCeeccCCHHHHhhcCCCCEEEEecCHH-HHHHHHH-HH
Confidence            468999999 9999999999998888854 5676532  2234556789999988  899999999843 3333332 23


Q ss_pred             HhcCCCCcEEEEcCCCc-ccCHHHHHHHHHhCCeeE
Q 043239          222 MTALGKEGVIINVGRGA-LIDEKELVHFLVRGSLVE  256 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~-~vd~~al~~al~~~~i~g  256 (286)
                      ++. .. ..+|..+.|- .-+.+.|.++.++..++-
T Consensus        85 ~~~-Gi-~~iVi~t~G~~~~~~~~l~~~A~~~gv~l  118 (288)
T 2nu8_A           85 IDA-GI-KLIITITEGIPTLDMLTVKVKLDEAGVRM  118 (288)
T ss_dssp             HHT-TC-SEEEECCCCCCHHHHHHHHHHHHHHTCEE
T ss_pred             HHC-CC-CEEEEECCCCCHHHHHHHHHHHHHcCCEE
Confidence            321 22 2345555553 334568888888877653

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=97.51  E-value=0.00026  Score=63.51  Aligned_cols=101  Identities=21%  Similarity=0.200  Sum_probs=63.3

Q ss_pred             CCEEEEEcCChHHHHHHHHhccC-CCEEE-EECCCCCCCC--Cc--ccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPF-GCSIA-YTSRKKKPGV--SY--PFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~-g~~V~-~~~r~~~~~~--~~--~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      -.+|||||+|.||+.+++.++.. ++++. ++++++++..  +.  ..+.++.+. .++|+|++|+|.....     +..
T Consensus         9 ~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~~g~~~~~~~~l~~~-~~~DvViiatp~~~h~-----~~~   82 (304)
T 3bio_A            9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPFELQPFRVVSDIEQL-ESVDVALVCSPSREVE-----RTA   82 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC-------CCTTSCEESSGGGS-SSCCEEEECSCHHHHH-----HHH
T ss_pred             CCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHcCCCcCCHHHHHhC-CCCCEEEECCCchhhH-----HHH
Confidence            35899999999999999998864 67876 6888776542  21  124455555 7899999999843222     223


Q ss_pred             HhcCCCCcEEEEcCC--C-cccCHHHHHHHHHhCCe
Q 043239          222 MTALGKEGVIINVGR--G-ALIDEKELVHFLVRGSL  254 (286)
Q Consensus       222 l~~mk~g~ilvn~sr--g-~~vd~~al~~al~~~~i  254 (286)
                      ...++.|.-+++..-  + .+.+.+.|.++.++.+.
T Consensus        83 ~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~  118 (304)
T 3bio_A           83 LEILKKGICTADSFDIHDGILALRRSLGDAAGKSGA  118 (304)
T ss_dssp             HHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCC
Confidence            344566777776532  2 33455677777776553

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.50  E-value=0.00013  Score=66.10  Aligned_cols=103  Identities=17%  Similarity=0.224  Sum_probs=66.7

Q ss_pred             CCEEEEEcCChHHHHHHHHhc-c-CCCEE-EEECCCCCCC------CCc-ccccCHHHhhc--CCCEEEEeccCChhhhh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLV-P-FGCSI-AYTSRKKKPG------VSY-PFYANVSGLAA--DSDVLIVCCALTEETHH  215 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~-~-~g~~V-~~~~r~~~~~------~~~-~~~~~l~e~l~--~aDiV~~~lp~~~~t~~  215 (286)
                      -.+|||||+|.||+.+++.++ . -++++ .+++++.++.      .+. ..+.+++++++  ++|+|++++|...... 
T Consensus         8 ~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~-   86 (346)
T 3cea_A            8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHPE-   86 (346)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHHH-
T ss_pred             cceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHHH-
Confidence            358999999999999999987 5 47775 5788876542      133 34678999986  6999999998543222 


Q ss_pred             cccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHhC-Cee
Q 043239          216 MINKDVMTALGKEG-VIINV-GRGALIDEKELVHFLVRG-SLV  255 (286)
Q Consensus       216 ~i~~~~l~~mk~g~-ilvn~-srg~~vd~~al~~al~~~-~i~  255 (286)
                          .....++.|. +++.- ....+-+.+.|.++.++. ++.
T Consensus        87 ----~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~  125 (346)
T 3cea_A           87 ----MTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQI  125 (346)
T ss_dssp             ----HHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSC
T ss_pred             ----HHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCe
Confidence                1223344564 44432 122333445677777766 554

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.50  E-value=0.00011  Score=67.53  Aligned_cols=63  Identities=14%  Similarity=0.129  Sum_probs=47.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----------CcccccCHHHhhcCCCEEEEeccCC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----------SYPFYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----------~~~~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      +.++|+|+|.|.+|+.+|+.|+. ..+|.+.+++.+...           ......++.++++++|+|++++|..
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~   88 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF   88 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred             CccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc
Confidence            45689999999999999999986 578988887654321           1112345778899999999999854

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.49  E-value=0.00022  Score=64.36  Aligned_cols=104  Identities=18%  Similarity=0.203  Sum_probs=70.8

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCC---CC----------Cc----ccccCH---HHhhcCCCEE
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKP---GV----------SY----PFYANV---SGLAADSDVL  203 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~---~~----------~~----~~~~~l---~e~l~~aDiV  203 (286)
                      ++.|+++.|+|.|.+|++++..|...|. +|++++|+.+.   ..          +.    ....++   .+.+.++|+|
T Consensus       145 ~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiI  224 (312)
T 3t4e_A          145 DMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADIL  224 (312)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEE
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEE
Confidence            4789999999999999999999999998 89999998332   11          00    112343   5668899999


Q ss_pred             EEeccCChh--hh-hcc-cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          204 IVCCALTEE--TH-HMI-NKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       204 ~~~lp~~~~--t~-~~i-~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      |.++|..-.  .. .++ +   ...++++.+++|+--.. ..+.=|..|-+.|
T Consensus       225 INaTp~Gm~~~~~~~~~~~---~~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G  273 (312)
T 3t4e_A          225 TNGTKVGMKPLENESLIGD---VSLLRPELLVTECVYNP-HMTKLLQQAQQAG  273 (312)
T ss_dssp             EECSSTTSTTSTTCCSCCC---GGGSCTTCEEEECCCSS-SSCHHHHHHHHTT
T ss_pred             EECCcCCCCCCCCCcccCC---HHHcCCCCEEEEeccCC-CCCHHHHHHHHCC
Confidence            999986521  11 111 2   23467899999997654 3444444444443

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=97.46  E-value=0.00017  Score=66.05  Aligned_cols=64  Identities=14%  Similarity=0.166  Sum_probs=50.9

Q ss_pred             CCEEEEEcCChHHHHHHHHhccC-CCEEE-EECCCCCCC-----CCcccccCHHHhhc--CCCEEEEeccCCh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPF-GCSIA-YTSRKKKPG-----VSYPFYANVSGLAA--DSDVLIVCCALTE  211 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~-g~~V~-~~~r~~~~~-----~~~~~~~~l~e~l~--~aDiV~~~lp~~~  211 (286)
                      ..+|||||+|.||+..++.+... ++++. +++++.++.     .+...+.+++++++  +.|+|++|+|...
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~   77 (359)
T 3e18_A            5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDS   77 (359)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGG
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHH
Confidence            35899999999999999999876 67875 678876542     24456789999997  7899999998543

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.45  E-value=0.00029  Score=56.23  Aligned_cols=84  Identities=6%  Similarity=-0.010  Sum_probs=55.3

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCC----C-----CCCcc-------cccCHHHh-hcCCCEEEEeccCC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK----P-----GVSYP-------FYANVSGL-AADSDVLIVCCALT  210 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~----~-----~~~~~-------~~~~l~e~-l~~aDiV~~~lp~~  210 (286)
                      ++++.|+|+|.+|+.+++.|...|++|++.+++..    .     ..+..       ....+.++ +.++|.|+++++..
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d   82 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND   82 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCCh
Confidence            46799999999999999999999999999998641    0     11111       11234454 78999999998865


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEE
Q 043239          211 EETHHMINKDVMTALGKEGVIIN  233 (286)
Q Consensus       211 ~~t~~~i~~~~l~~mk~g~ilvn  233 (286)
                      +.+.  .-......+.+...+|.
T Consensus        83 ~~n~--~~~~~a~~~~~~~~ii~  103 (153)
T 1id1_A           83 ADNA--FVVLSAKDMSSDVKTVL  103 (153)
T ss_dssp             HHHH--HHHHHHHHHTSSSCEEE
T ss_pred             HHHH--HHHHHHHHHCCCCEEEE
Confidence            3332  22334445534333443

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=97.45  E-value=0.00014  Score=66.51  Aligned_cols=103  Identities=16%  Similarity=0.105  Sum_probs=66.1

Q ss_pred             CCEEEEEcCChHHH-HHHHHhccC-CCEEE-EECCCCCCCC------CcccccCHHHhhc--CCCEEEEeccCChhhhhc
Q 043239          148 GKRVGIVGLGSIGS-EVAKRLVPF-GCSIA-YTSRKKKPGV------SYPFYANVSGLAA--DSDVLIVCCALTEETHHM  216 (286)
Q Consensus       148 g~~vgIiG~G~iG~-~~A~~l~~~-g~~V~-~~~r~~~~~~------~~~~~~~l~e~l~--~aDiV~~~lp~~~~t~~~  216 (286)
                      ..+|||||+|.||+ .+++.+... +++|+ +++++.++..      +...+.+++++++  +.|+|++|+|........
T Consensus        27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~  106 (350)
T 3rc1_A           27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLHAEWI  106 (350)
T ss_dssp             CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGHHHHH
T ss_pred             ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence            46899999999999 789988876 77875 7788765432      3444689999996  589999999854332211


Q ss_pred             ccHHHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHhCCee
Q 043239          217 INKDVMTALGKE-GVIINVG-RGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       217 i~~~~l~~mk~g-~ilvn~s-rg~~vd~~al~~al~~~~i~  255 (286)
                        ...   ++.| .+++.-- .-.+-+.++|.++.++.++.
T Consensus       107 --~~a---l~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~  142 (350)
T 3rc1_A          107 --DRA---LRAGKHVLAEKPLTTDRPQAERLFAVARERGLL  142 (350)
T ss_dssp             --HHH---HHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             --HHH---HHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCE
Confidence              222   2333 2444432 23445556666666554443

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.41  E-value=8.1e-05  Score=63.17  Aligned_cols=64  Identities=11%  Similarity=0.140  Sum_probs=48.0

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------Ccc-------cccCHHHh-hcCCCEEEEeccCChh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SYP-------FYANVSGL-AADSDVLIVCCALTEE  212 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~~-------~~~~l~e~-l~~aDiV~~~lp~~~~  212 (286)
                      ++|.|+|+|.+|+.+|+.|...|++|++++++++...      +..       ....+.++ +.++|+|++++|....
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~   78 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEV   78 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHH
Confidence            4799999999999999999999999999998765321      111       11224443 6789999999886543

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=97.40  E-value=0.00056  Score=60.99  Aligned_cols=106  Identities=19%  Similarity=0.244  Sum_probs=72.1

Q ss_pred             CCEEEEEcC-ChHHHHHHHHhccCCCEEE-EECCCC--CCCCCcccccCHHHhhc--CCCEEEEeccCChhhhhcccHHH
Q 043239          148 GKRVGIVGL-GSIGSEVAKRLVPFGCSIA-YTSRKK--KPGVSYPFYANVSGLAA--DSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       148 g~~vgIiG~-G~iG~~~A~~l~~~g~~V~-~~~r~~--~~~~~~~~~~~l~e~l~--~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      ..+|+|+|+ |++|+.+++.++..|++++ ..++..  ....+...+.+++++..  ..|++++++|. +.+...+. +.
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~-~~~~~~~~-ea   84 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVAHHEVDASIIFVPA-PAAADAAL-EA   84 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHSCCSEEEECCCH-HHHHHHHH-HH
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCceECCEEeeCCHHHHhhcCCCCEEEEecCH-HHHHHHHH-HH
Confidence            468999998 9999999999998899854 667654  22235556789999988  89999999983 33444443 22


Q ss_pred             HhcCCCCcEEEEcCCC-cccCHHHHHHHHHhCCeeEE
Q 043239          222 MTALGKEGVIINVGRG-ALIDEKELVHFLVRGSLVEL  257 (286)
Q Consensus       222 l~~mk~g~ilvn~srg-~~vd~~al~~al~~~~i~ga  257 (286)
                      .+ ..-. .+|..+.| ..-+++.+.++.++..++-.
T Consensus        85 ~~-~Gi~-~vVi~t~G~~~~~~~~l~~~a~~~gi~vi  119 (288)
T 1oi7_A           85 AH-AGIP-LIVLITEGIPTLDMVRAVEEIKALGSRLI  119 (288)
T ss_dssp             HH-TTCS-EEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             HH-CCCC-EEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence            22 1222 24555555 33456688888888776533

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=97.39  E-value=0.00058  Score=61.69  Aligned_cols=63  Identities=17%  Similarity=0.296  Sum_probs=49.4

Q ss_pred             CEEEEEcCChHHH-HHHHHhccCCCEE-EEECCCCCCCC-------CcccccCHHHhhc--CCCEEEEeccCCh
Q 043239          149 KRVGIVGLGSIGS-EVAKRLVPFGCSI-AYTSRKKKPGV-------SYPFYANVSGLAA--DSDVLIVCCALTE  211 (286)
Q Consensus       149 ~~vgIiG~G~iG~-~~A~~l~~~g~~V-~~~~r~~~~~~-------~~~~~~~l~e~l~--~aDiV~~~lp~~~  211 (286)
                      .+|||||+|.+|. .+++.++..++++ .++|++.++..       +...+.+++++++  +.|+|++++|...
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~   78 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCD   78 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGG
T ss_pred             cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhh
Confidence            5899999999996 6777776668886 57898877642       2345789999997  5899999998543

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=97.38  E-value=0.00022  Score=64.06  Aligned_cols=113  Identities=12%  Similarity=0.117  Sum_probs=67.4

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC-----------CcccccCHHHhhcCCCEEEEeccCCh---
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV-----------SYPFYANVSGLAADSDVLIVCCALTE---  211 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~-----------~~~~~~~l~e~l~~aDiV~~~lp~~~---  211 (286)
                      .++|+|||.|.||..+|..+...|.  +|..+|.+.+...           ......++ +.+++||+|+++.....   
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~   92 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSSQ   92 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----C
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCCC
Confidence            3689999999999999999987787  8999998775211           11122466 67899999999863211   


Q ss_pred             -------hhhhcc---cHHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCeeEE--Eeecc
Q 043239          212 -------ETHHMI---NKDVMTALGKEGVIINVGRGALIDEKELVHF--LVRGSLVEL--VLMCL  262 (286)
Q Consensus       212 -------~t~~~i---~~~~l~~mk~g~ilvn~srg~~vd~~al~~a--l~~~~i~ga--~lDv~  262 (286)
                             .+..++   -++.-+. .|.+++++++...-+-...+.+.  +...++.|.  .||+.
T Consensus        93 tR~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~sNP~~~~t~~~~~~~~~p~~rviG~gt~Ld~~  156 (303)
T 2i6t_A           93 SYLDVVQSNVDMFRALVPALGHY-SQHSVLLVASQPVEIMTYVTWKLSTFPANRVIGIGCNLDSQ  156 (303)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHH-TTTCEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEcCChHHHHHHHHHHhcCCCHHHeeCCCCCchHH
Confidence                   111111   1222222 48899999877433333333332  223456555  34653

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.37  E-value=0.00013  Score=62.86  Aligned_cols=90  Identities=17%  Similarity=0.224  Sum_probs=59.0

Q ss_pred             CCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------C-ccc-ccC-HHHhhcCCCEEEEeccCC
Q 043239          140 YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------S-YPF-YAN-VSGLAADSDVLIVCCALT  210 (286)
Q Consensus       140 ~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~-~~~-~~~-l~e~l~~aDiV~~~lp~~  210 (286)
                      ++..-++.|++|.|||.|.+|...++.|...|.+|+++++...+..      + ... ..+ .++.+.++|+|+.+.. .
T Consensus        23 ~Pifl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~-d  101 (223)
T 3dfz_A           23 YTVMLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATN-D  101 (223)
T ss_dssp             CEEEECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCC-C
T ss_pred             cccEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCC-C
Confidence            4566789999999999999999999999999999999988654210      1 110 011 1245678999887754 3


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcC
Q 043239          211 EETHHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       211 ~~t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      ++..    .......+ -.++||+.
T Consensus       102 ~~~N----~~I~~~ak-~gi~VNvv  121 (223)
T 3dfz_A          102 QAVN----KFVKQHIK-NDQLVNMA  121 (223)
T ss_dssp             THHH----HHHHHHSC-TTCEEEC-
T ss_pred             HHHH----HHHHHHHh-CCCEEEEe
Confidence            3332    23333334 34556654

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=97.37  E-value=0.00016  Score=64.81  Aligned_cols=90  Identities=12%  Similarity=0.252  Sum_probs=59.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC--------Cc------c-cc-cCHHHhhcCCCEEEEecc
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV--------SY------P-FY-ANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~--------~~------~-~~-~~l~e~l~~aDiV~~~lp  208 (286)
                      ..++|+|||.|.||..+|..|...|+  +|..++++.+...        +.      . .. .+ .+.+++||+|+++++
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~aD~Vii~v~   84 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDD-PEICRDADMVVITAG   84 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESC-GGGGTTCSEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCC-HHHhCCCCEEEECCC
Confidence            34799999999999999999998898  9999998753211        00      0 01 13 356789999999985


Q ss_pred             CChhh---h--------hc---ccHHHHhcCCCCcEEEEcCCCc
Q 043239          209 LTEET---H--------HM---INKDVMTALGKEGVIINVGRGA  238 (286)
Q Consensus       209 ~~~~t---~--------~~---i~~~~l~~mk~g~ilvn~srg~  238 (286)
                      .....   +        .+   +-+..-+ ..+++++++++.|-
T Consensus        85 ~~~~~g~~r~~~~~~n~~~~~~~~~~i~~-~~~~~~vi~~~Np~  127 (319)
T 1lld_A           85 PRQKPGQSRLELVGATVNILKAIMPNLVK-VAPNAIYMLITNPV  127 (319)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHH-HCTTSEEEECCSSH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCceEEEecCch
Confidence            32110   0        01   1122222 36788999987764

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=97.33  E-value=0.0003  Score=64.38  Aligned_cols=64  Identities=25%  Similarity=0.379  Sum_probs=50.5

Q ss_pred             CCEEEEEcCChHHHHHHHHhc-c-CCCEEE-EECCCCCCCC------C--cccccCHHHhhc--CCCEEEEeccCCh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLV-P-FGCSIA-YTSRKKKPGV------S--YPFYANVSGLAA--DSDVLIVCCALTE  211 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~-~-~g~~V~-~~~r~~~~~~------~--~~~~~~l~e~l~--~aDiV~~~lp~~~  211 (286)
                      ..+|||||+|.||+..++.+. . -+++++ ++|++.++..      +  ...+.+++++++  +.|+|++|+|...
T Consensus        23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~   99 (357)
T 3ec7_A           23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEA   99 (357)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGG
T ss_pred             eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHH
Confidence            468999999999999999988 4 367865 7898876532      3  345789999987  4899999998543

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=97.31  E-value=0.00037  Score=63.95  Aligned_cols=102  Identities=16%  Similarity=0.248  Sum_probs=64.0

Q ss_pred             CEEEEEcCChHHHH-HHHHhccC-CCEEE-EECCCCCCC----CCcccccCHHHhhc--CCCEEEEeccCChhhhhcccH
Q 043239          149 KRVGIVGLGSIGSE-VAKRLVPF-GCSIA-YTSRKKKPG----VSYPFYANVSGLAA--DSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       149 ~~vgIiG~G~iG~~-~A~~l~~~-g~~V~-~~~r~~~~~----~~~~~~~~l~e~l~--~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      .+|||||+|.||+. .++.++.. +++|+ +++++.++.    .+...+.+++++++  +.|+|++|+|.......    
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~----   83 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDLPDVTVIASPEAAVQHPDVDLVVIASPNATHAPL----   83 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHHCTTSEEESCHHHHHTCTTCSEEEECSCGGGHHHH----
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCcEECCHHHHhcCCCCCEEEEeCChHHHHHH----
Confidence            58999999999997 77777765 67875 678876532    13445789999998  78999999985433221    


Q ss_pred             HHHhcCCCCc-EEEEcC-CCcccCHHHHHHHHHhCCee
Q 043239          220 DVMTALGKEG-VIINVG-RGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       220 ~~l~~mk~g~-ilvn~s-rg~~vd~~al~~al~~~~i~  255 (286)
                       ....++.|. +++.-- .-.+-+.+.|.++.++.++.
T Consensus        84 -~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~  120 (364)
T 3e82_A           84 -ARLALNAGKHVVVDKPFTLDMQEARELIALAEEKQRL  120 (364)
T ss_dssp             -HHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             -HHHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCe
Confidence             122233343 333221 22334455566666555443

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=97.30  E-value=0.00014  Score=68.89  Aligned_cols=109  Identities=13%  Similarity=0.151  Sum_probs=72.7

Q ss_pred             CCCEEEEEcCChH--HHHHHHHhcc----CCCEEEEECCCCCCCC--------------CcccccCHHHhhcCCCEEEEe
Q 043239          147 GGKRVGIVGLGSI--GSEVAKRLVP----FGCSIAYTSRKKKPGV--------------SYPFYANVSGLAADSDVLIVC  206 (286)
Q Consensus       147 ~g~~vgIiG~G~i--G~~~A~~l~~----~g~~V~~~~r~~~~~~--------------~~~~~~~l~e~l~~aDiV~~~  206 (286)
                      ++++|+|||.|.+  |..++..+..    .| +|..||+..+...              ......++++++++||+|+++
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~a   82 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIIS   82 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEec
Confidence            4579999999997  5788877653    46 9999998764311              122346899999999999999


Q ss_pred             ccCC-----------hhhhhcccH------------------------HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239          207 CALT-----------EETHHMINK------------------------DVMTALGKEGVIINVGRGALIDEKELVHFLVR  251 (286)
Q Consensus       207 lp~~-----------~~t~~~i~~------------------------~~l~~mk~g~ilvn~srg~~vd~~al~~al~~  251 (286)
                      ++..           +...++...                        +.+....|.+++||++..--+-+.++.+.+..
T Consensus        83 irvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~~k~~p~  162 (450)
T 3fef_A           83 ILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPG  162 (450)
T ss_dssp             CCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHCTT
T ss_pred             cccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHHCCC
Confidence            9643           222333111                        12223368999999988876666666665444


Q ss_pred             CCeeE
Q 043239          252 GSLVE  256 (286)
Q Consensus       252 ~~i~g  256 (286)
                      .++.|
T Consensus       163 ~rviG  167 (450)
T 3fef_A          163 IKAIG  167 (450)
T ss_dssp             CEEEE
T ss_pred             CCEEE
Confidence            44444

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=97.29  E-value=0.00021  Score=64.52  Aligned_cols=63  Identities=19%  Similarity=0.400  Sum_probs=46.3

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCCC---------------cccccCHHHhhcCCCEEEEeccCC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGVS---------------YPFYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~~---------------~~~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      .++|+|||.|.||.++|..++..|.  +|..+|++.+...+               .....+..+.+++||+|+++.|..
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~   85 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN   85 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCC
Confidence            4699999999999999999987664  89999987642210               000123456789999999997643

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=97.26  E-value=0.00049  Score=62.54  Aligned_cols=63  Identities=17%  Similarity=0.287  Sum_probs=46.5

Q ss_pred             CEEEEEcCChHHHH-HHH-Hhcc-CCCEEE-EECCCCCCCC------CcccccCHHHhhcC--CCEEEEeccCCh
Q 043239          149 KRVGIVGLGSIGSE-VAK-RLVP-FGCSIA-YTSRKKKPGV------SYPFYANVSGLAAD--SDVLIVCCALTE  211 (286)
Q Consensus       149 ~~vgIiG~G~iG~~-~A~-~l~~-~g~~V~-~~~r~~~~~~------~~~~~~~l~e~l~~--aDiV~~~lp~~~  211 (286)
                      .+|||||+|.||+. .+. .+.. -+++++ +++++.++..      +...+.++++++++  .|+|++|+|...
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~   77 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADS   77 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGG
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHH
Confidence            48999999999996 555 3343 367876 7888765432      23356899999976  899999998543

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=97.26  E-value=0.00041  Score=63.53  Aligned_cols=101  Identities=17%  Similarity=0.231  Sum_probs=63.8

Q ss_pred             CCEEEEEcCChHHHH-HHHHhccC-CCEEE-EECCCCCCCC-------CcccccCHHHhhcCC--CEEEEeccCChhhhh
Q 043239          148 GKRVGIVGLGSIGSE-VAKRLVPF-GCSIA-YTSRKKKPGV-------SYPFYANVSGLAADS--DVLIVCCALTEETHH  215 (286)
Q Consensus       148 g~~vgIiG~G~iG~~-~A~~l~~~-g~~V~-~~~r~~~~~~-------~~~~~~~l~e~l~~a--DiV~~~lp~~~~t~~  215 (286)
                      ..+|||||+|.||+. +++.+... +++++ ++|++.++..       ....+.++++++++.  |+|++|+|...... 
T Consensus         5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~-   83 (359)
T 3m2t_A            5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQLHFE-   83 (359)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHHHHH-
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHHHHH-
Confidence            358999999999995 88888776 67875 7888765421       234568999999754  99999998432221 


Q ss_pred             cccHHHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHhCC
Q 043239          216 MINKDVMTALGKE-GVIINVG-RGALIDEKELVHFLVRGS  253 (286)
Q Consensus       216 ~i~~~~l~~mk~g-~ilvn~s-rg~~vd~~al~~al~~~~  253 (286)
                       +-...   ++.| .+|+.-- .-++-+.++|.++.++.+
T Consensus        84 -~~~~a---l~aGkhVl~EKPla~~~~e~~~l~~~a~~~g  119 (359)
T 3m2t_A           84 -MGLLA---MSKGVNVFVEKPPCATLEELETLIDAARRSD  119 (359)
T ss_dssp             -HHHHH---HHTTCEEEECSCSCSSHHHHHHHHHHHHHHT
T ss_pred             -HHHHH---HHCCCeEEEECCCcCCHHHHHHHHHHHHHcC
Confidence             11222   3344 3454421 223345556666555533

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.24  E-value=0.00021  Score=68.04  Aligned_cols=105  Identities=18%  Similarity=0.177  Sum_probs=65.0

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccC-CCEEEEECCCCCCCC------Ccc-------cccCHHHhhcCCCEEEEecc
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPF-GCSIAYTSRKKKPGV------SYP-------FYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~-g~~V~~~~r~~~~~~------~~~-------~~~~l~e~l~~aDiV~~~lp  208 (286)
                      +..+.+++|+|+|.|.+|+.+++.|... |++|.+++|+.++..      +..       ...++.++++++|+|++++|
T Consensus        18 ~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp   97 (467)
T 2axq_A           18 EGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIP   97 (467)
T ss_dssp             -----CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSC
T ss_pred             ccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCc
Confidence            4567899999999999999999999987 789999999764321      111       11245677889999999998


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 043239          209 LTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGS  253 (286)
Q Consensus       209 ~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~  253 (286)
                      ..... . +..   ..+++|..+++++--.. +...|.++.++.+
T Consensus        98 ~~~~~-~-v~~---a~l~~g~~vvd~~~~~p-~~~~Ll~~Ak~aG  136 (467)
T 2axq_A           98 YTFHP-N-VVK---SAIRTKTDVVTSSYISP-ALRELEPEIVKAG  136 (467)
T ss_dssp             GGGHH-H-HHH---HHHHHTCEEEECSCCCH-HHHHHHHHHHHHT
T ss_pred             hhhhH-H-HHH---HHHhcCCEEEEeecCCH-HHHHHHHHHHHcC
Confidence            54221 1 112   22345667777653111 2345555544433

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=97.23  E-value=0.00059  Score=61.67  Aligned_cols=114  Identities=21%  Similarity=0.255  Sum_probs=67.7

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCCC-------c-------ccccCHHHhhcCCCEEEEeccCCh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGVS-------Y-------PFYANVSGLAADSDVLIVCCALTE  211 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~~-------~-------~~~~~l~e~l~~aDiV~~~lp~~~  211 (286)
                      .++|+|||.|.+|.+++..|...|.  +|..+|...++..+       .       ....+-.+.+++||+|+++.+...
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~   86 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR   86 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            3689999999999999999998887  89999987654331       0       011123567899999999987432


Q ss_pred             hhhhc-------cc----HH---HHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCeeEE--Eeecc
Q 043239          212 ETHHM-------IN----KD---VMTALGKEGVIINVGRGALIDEKELVHF--LVRGSLVEL--VLMCL  262 (286)
Q Consensus       212 ~t~~~-------i~----~~---~l~~mk~g~ilvn~srg~~vd~~al~~a--l~~~~i~ga--~lDv~  262 (286)
                       ..+.       .+    ++   .+....|++++++++..-=+....+.+.  +...++-|.  .||+.
T Consensus        87 -k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~~~~~~k~s~~p~~rviG~gt~Ld~~  154 (318)
T 1y6j_A           87 -KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGSGTVLDSI  154 (318)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHHHHHHTCCTTTEEECTTHHHHH
T ss_pred             -CCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHHHHHcCCCHHHEeccCCchHHH
Confidence             1111       00    11   1222268999999754333333344333  344466665  36744

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=97.22  E-value=0.01  Score=53.19  Aligned_cols=146  Identities=19%  Similarity=0.184  Sum_probs=95.9

Q ss_pred             cEEEEcCCCCCcCChhH-HhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCE
Q 043239           72 EIVVGSTAGIDHVDLQE-CRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKR  150 (286)
Q Consensus        72 k~i~~~~~G~d~id~~~-~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~  150 (286)
                      -.|..+...  +=.+.. ++-.+|+|.|..+...-++  .+|+=++.+.++.         |            .+.|.+
T Consensus        96 D~iviR~~~--~~~~~~lA~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~---------g------------~l~gl~  150 (307)
T 2i6u_A           96 DAIVWRTFG--QERLDAMASVATVPVINALSDEFHPC--QVLADLQTIAERK---------G------------ALRGLR  150 (307)
T ss_dssp             EEEEEECSS--HHHHHHHHHHCSSCEEESCCSSCCHH--HHHHHHHHHHHHH---------S------------CCTTCE
T ss_pred             CEEEEecCC--hhHHHHHHhhCCCCEEcCCCCCcCcc--HHHHHHHHHHHHh---------C------------CcCCeE
Confidence            455555432  222333 3445799999766433333  3444444433321         1            378999


Q ss_pred             EEEEcCC--hHHHHHHHHhccCCCEEEEECCCCCCCC--------------C--cccccCHHHhhcCCCEEEEecc-C--
Q 043239          151 VGIVGLG--SIGSEVAKRLVPFGCSIAYTSRKKKPGV--------------S--YPFYANVSGLAADSDVLIVCCA-L--  209 (286)
Q Consensus       151 vgIiG~G--~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------------~--~~~~~~l~e~l~~aDiV~~~lp-~--  209 (286)
                      |+++|=|  ++..+++..+..+|++|.+..+..-...              +  +....+++|+++++|+|.+-.= .  
T Consensus       151 va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~~w~smg  230 (307)
T 2i6u_A          151 LSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTDTWTSMG  230 (307)
T ss_dssp             EEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSSCTT
T ss_pred             EEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEecceecCC
Confidence            9999985  9999999999999999998887553322              1  2236789999999999988321 0  


Q ss_pred             ----Ch-----hhhhcccHHHHhcCCCCcEEEEcC---CCcccCH
Q 043239          210 ----TE-----ETHHMINKDVMTALGKEGVIINVG---RGALIDE  242 (286)
Q Consensus       210 ----~~-----~t~~~i~~~~l~~mk~g~ilvn~s---rg~~vd~  242 (286)
                          .+     -....++++.++.+|++++|.-+.   ||.=|+.
T Consensus       231 ~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~lP~~Rg~EI~~  275 (307)
T 2i6u_A          231 QENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCLPAHRGDEITD  275 (307)
T ss_dssp             CTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCH
T ss_pred             cccchHHHHHHHhhcCCCHHHHhhcCCCcEEECCCCCCCCcccCH
Confidence                00     023557889999999999999996   4544443

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=97.22  E-value=0.00034  Score=70.16  Aligned_cols=113  Identities=11%  Similarity=0.151  Sum_probs=82.6

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC--------------------C-------cccccCHHHhhcCCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV--------------------S-------YPFYANVSGLAADSD  201 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------------------~-------~~~~~~l~e~l~~aD  201 (286)
                      ++|||||.|.||..+|..+...|++|+.+|++++...                    .       .....+. +.+++||
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~aD  395 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTVD  395 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCG-GGGGSCS
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcH-HHHhhCC
Confidence            6899999999999999999999999999998764211                    0       0112333 4578999


Q ss_pred             EEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239          202 VLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS  265 (286)
Q Consensus       202 iV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e  265 (286)
                      +|+=++|..-+.+.-+-++.-+.++++++|-.-.  +-+.-..|.+.++ +.=+.+++=.|.+.
T Consensus       396 lVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNT--Ssl~i~~ia~~~~-~p~r~ig~HFfnP~  456 (742)
T 3zwc_A          396 LVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNT--SALNVDDIASSTD-RPQLVIGTHFFSPA  456 (742)
T ss_dssp             EEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECC--SSSCHHHHHTTSS-CGGGEEEEECCSST
T ss_pred             EEEEeccccHHHHHHHHHHHhhcCCCCceEEecC--CcCChHHHHhhcC-CccccccccccCCC
Confidence            9999999888877777677777789999876443  3355666766653 34456677777554

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=97.22  E-value=0.00034  Score=62.94  Aligned_cols=59  Identities=25%  Similarity=0.277  Sum_probs=46.3

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC---------------C--cccccCHHHhhcCCCEEEEecc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV---------------S--YPFYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~---------------~--~~~~~~l~e~l~~aDiV~~~lp  208 (286)
                      ++|+|||.|.||..++..+...|+ +|..+|++.++..               .  .....+. +.+++||+|+++.+
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g   79 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSG   79 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCC
Confidence            589999999999999999998886 8999998764321               0  1112466 67899999999975

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=97.20  E-value=0.0011  Score=59.66  Aligned_cols=107  Identities=16%  Similarity=0.240  Sum_probs=74.6

Q ss_pred             cCCCCEEEEE-cC-ChHHHHHHHHhccCCCEEE-EECCCCC--CCCCcccccCHHHhhc--CCCEEEEeccCChhhhhcc
Q 043239          145 TLGGKRVGIV-GL-GSIGSEVAKRLVPFGCSIA-YTSRKKK--PGVSYPFYANVSGLAA--DSDVLIVCCALTEETHHMI  217 (286)
Q Consensus       145 ~l~g~~vgIi-G~-G~iG~~~A~~l~~~g~~V~-~~~r~~~--~~~~~~~~~~l~e~l~--~aDiV~~~lp~~~~t~~~i  217 (286)
                      -+..++++|| |+ |++|+.+++.++..|++++ ..++...  ...+...+.+++|+.+  ..|++++++|. +....++
T Consensus        10 l~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~vD~avI~vP~-~~~~~~~   88 (305)
T 2fp4_A           10 YVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPP-PFAAAAI   88 (305)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCH-HHHHHHH
T ss_pred             HhCCCcEEEEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcceECCeeeechHHHhhhcCCCCEEEEecCH-HHHHHHH
Confidence            3566788999 99 9999999999999999854 5666542  2335556789999988  89999999994 3334444


Q ss_pred             cHHHHhcCCCC-cEEEEcCCCcc-cCHHHHHHHHHhC-CeeE
Q 043239          218 NKDVMTALGKE-GVIINVGRGAL-IDEKELVHFLVRG-SLVE  256 (286)
Q Consensus       218 ~~~~l~~mk~g-~ilvn~srg~~-vd~~al~~al~~~-~i~g  256 (286)
                      .+ ..+   .| ..+|+.+.|-. -++..+.+.+++. .++-
T Consensus        89 ~e-~i~---~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~l  126 (305)
T 2fp4_A           89 NE-AID---AEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRL  126 (305)
T ss_dssp             HH-HHH---TTCSEEEECCCCCCHHHHHHHHHHHTTCSSCEE
T ss_pred             HH-HHH---CCCCEEEEECCCCChHHHHHHHHHHHhcCCcEE
Confidence            32 322   22 24566777642 3455888888887 6653

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=97.20  E-value=0.00039  Score=63.12  Aligned_cols=110  Identities=15%  Similarity=0.164  Sum_probs=68.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC---------------Ccc--cccCHHHhhcCCCEEEEecc
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV---------------SYP--FYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~---------------~~~--~~~~l~e~l~~aDiV~~~lp  208 (286)
                      ..++|+|||.|.||..+|..|...|+ +|..+|+..++..               ...  ...+. +.+++||+|+++.+
T Consensus         6 ~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaag   84 (324)
T 3gvi_A            6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTAG   84 (324)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECCS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEccC
Confidence            46799999999999999999988888 9999999876421               111  12344 78999999999864


Q ss_pred             CChhhhhc-----c--c----HH---HHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCeeEEE
Q 043239          209 LTEETHHM-----I--N----KD---VMTALGKEGVIINVGRGALIDEKELVHF--LVRGSLVELV  258 (286)
Q Consensus       209 ~~~~t~~~-----i--~----~~---~l~~mk~g~ilvn~srg~~vd~~al~~a--l~~~~i~ga~  258 (286)
                      .. ...++     +  |    ++   .+....|++++++++..-=+....+.+.  +...++.|.+
T Consensus        85 ~p-~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNPvd~~t~~~~k~sg~p~~rviG~~  149 (324)
T 3gvi_A           85 VP-RKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLDAMVWALQKFSGLPAHKVVGMA  149 (324)
T ss_dssp             CC-CC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECC
T ss_pred             cC-CCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCCcHHHHHHHHHhcCCCHHHEEeec
Confidence            22 11111     1  1    11   1222358899999975433333333332  1223455554

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=97.19  E-value=0.00041  Score=62.69  Aligned_cols=110  Identities=16%  Similarity=0.210  Sum_probs=67.4

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC---------------Ccccc-cCHHHhhcCCCEEEEeccCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV---------------SYPFY-ANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~---------------~~~~~-~~l~e~l~~aDiV~~~lp~~  210 (286)
                      ++|+|+|.|.||.++|..+...|.  +|..+|++.++..               ..... .+..+.+++||+|+++.+..
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~   80 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP   80 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence            589999999999999999987776  8999999875422               01111 24567899999999987543


Q ss_pred             hh-----------hhhcccH--HHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCeeEEE
Q 043239          211 EE-----------THHMINK--DVMTALGKEGVIINVGRGALIDEKELVHF--LVRGSLVELV  258 (286)
Q Consensus       211 ~~-----------t~~~i~~--~~l~~mk~g~ilvn~srg~~vd~~al~~a--l~~~~i~ga~  258 (286)
                      ..           +..++..  +.+....|.+++++++..-=+....+.+.  +...++.|.+
T Consensus        81 ~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~~k~~g~p~~rviG~~  143 (314)
T 3nep_X           81 RSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVAYEASGFPTNRVMGMA  143 (314)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSSHHHHHHHHHHHHTCCGGGEEECC
T ss_pred             CCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCchhHHHHHHHHhcCCChHHEEeec
Confidence            21           1111110  12333468899999975432333333332  1134555554

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.18  E-value=0.00014  Score=68.20  Aligned_cols=84  Identities=19%  Similarity=0.203  Sum_probs=58.5

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc-------cccCHHHh-hcCCCEEEEeccCChhhh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP-------FYANVSGL-AADSDVLIVCCALTEETH  214 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~-------~~~~l~e~-l~~aDiV~~~lp~~~~t~  214 (286)
                      +.+|.|+|+|.+|+.+++.|...|++|++.+++++...     +..       ....|.++ +.++|+|+++++....+.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~   83 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNL   83 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHH
Confidence            45799999999999999999999999999998765421     211       11224444 688999999998654443


Q ss_pred             hcccHHHHhcCCCCcEEEE
Q 043239          215 HMINKDVMTALGKEGVIIN  233 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn  233 (286)
                      .+  ......+.+...+|-
T Consensus        84 ~i--~~~ar~~~p~~~Iia  100 (413)
T 3l9w_A           84 QL--TEMVKEHFPHLQIIA  100 (413)
T ss_dssp             HH--HHHHHHHCTTCEEEE
T ss_pred             HH--HHHHHHhCCCCeEEE
Confidence            33  345555667655543

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.16  E-value=0.0068  Score=54.43  Aligned_cols=131  Identities=11%  Similarity=0.140  Sum_probs=87.7

Q ss_pred             HhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEc-CChHHHHHHHHh
Q 043239           89 CRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVG-LGSIGSEVAKRL  167 (286)
Q Consensus        89 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG-~G~iG~~~A~~l  167 (286)
                      ++..+|+|.|..+...-++  .+|+=++.+.++.         |            .+.|.+|+++| .+++..+++..+
T Consensus       118 A~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~~---------g------------~l~glkva~vGD~~~va~Sl~~~~  174 (309)
T 4f2g_A          118 AENSRVPVINGLTNEYHPC--QVLADIFTYYEHR---------G------------PIRGKTVAWVGDANNMLYTWIQAA  174 (309)
T ss_dssp             HHTCSSCEEEEECSSCCHH--HHHHHHHHHHHHH---------S------------CCTTCEEEEESCCCHHHHHHHHHH
T ss_pred             HHhCCCCEEECCCCccCcH--HHHHHHHHHHHHh---------C------------CCCCCEEEEECCCcchHHHHHHHH
Confidence            3455799999876443333  3333333333221         1            37899999999 578899999999


Q ss_pred             ccCCCEEEEECCCCCCCC----------CcccccCHHHhhcCCCEEEEec----cCCh--------hhhhcccHHHHhcC
Q 043239          168 VPFGCSIAYTSRKKKPGV----------SYPFYANVSGLAADSDVLIVCC----ALTE--------ETHHMINKDVMTAL  225 (286)
Q Consensus       168 ~~~g~~V~~~~r~~~~~~----------~~~~~~~l~e~l~~aDiV~~~l----p~~~--------~t~~~i~~~~l~~m  225 (286)
                      ..+|++|.+..+..-...          .+....+++|+++++|+|.+-.    ....        -....++.+.++.+
T Consensus       175 ~~~G~~v~~~~P~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~smg~e~~~~~r~~~~~~y~v~~~~l~~a  254 (309)
T 4f2g_A          175 RILDFKLQLSTPPGYALDAKLVDAESAPFYQVFDDPNEACKGADLVTTDVWTSMGFEAENEARKRAFADWCVDEEMMSHA  254 (309)
T ss_dssp             HHHTCEEEEECCGGGCCCGGGSCGGGGGGEEECSSHHHHTTTCSEEEECCC------------CCSGGGGCBCHHHHTTS
T ss_pred             HHcCCEEEEECCcccCCCHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecccccCcchhhHHHHHHHhcCceeCHHHHHhc
Confidence            999999998876432211          1223579999999999998743    1100        02355789999999


Q ss_pred             CCCcEEEEcC---CCcccCH
Q 043239          226 GKEGVIINVG---RGALIDE  242 (286)
Q Consensus       226 k~g~ilvn~s---rg~~vd~  242 (286)
                      |++++|.-+.   ||.=|+.
T Consensus       255 ~~~ai~mH~lP~~Rg~EI~~  274 (309)
T 4f2g_A          255 NSDALFMHCLPAHRGEEVTA  274 (309)
T ss_dssp             CTTCEEEECSSCCBTTTBCH
T ss_pred             CCCeEEECCCCCCCCceecH
Confidence            9999999986   5644443

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.15  E-value=0.00071  Score=57.73  Aligned_cols=92  Identities=16%  Similarity=0.066  Sum_probs=62.1

Q ss_pred             CCCCEEEEEc-CChHHHHHHHHhccCC-CEEEEECCCCCCCCC-----c-------ccccCHHHhhcCCCEEEEeccCCh
Q 043239          146 LGGKRVGIVG-LGSIGSEVAKRLVPFG-CSIAYTSRKKKPGVS-----Y-------PFYANVSGLAADSDVLIVCCALTE  211 (286)
Q Consensus       146 l~g~~vgIiG-~G~iG~~~A~~l~~~g-~~V~~~~r~~~~~~~-----~-------~~~~~l~e~l~~aDiV~~~lp~~~  211 (286)
                      ...++|.|.| .|.||+.+++.|...| ++|.+.+|+.++...     .       ....+++++++.+|+|+.+.....
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~  100 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGED  100 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTT
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCc
Confidence            3457899999 7999999999999999 899999987654321     1       112356678899999998876432


Q ss_pred             hhhhcccHHHHhcCCC-C-cEEEEcCCCcc
Q 043239          212 ETHHMINKDVMTALGK-E-GVIINVGRGAL  239 (286)
Q Consensus       212 ~t~~~i~~~~l~~mk~-g-~ilvn~srg~~  239 (286)
                      ..  ...+..++.|+. + ..||++|....
T Consensus       101 ~~--~~~~~~~~~~~~~~~~~iV~iSS~~~  128 (236)
T 3qvo_A          101 LD--IQANSVIAAMKACDVKRLIFVLSLGI  128 (236)
T ss_dssp             HH--HHHHHHHHHHHHTTCCEEEEECCCCC
T ss_pred             hh--HHHHHHHHHHHHcCCCEEEEEeccee
Confidence            21  112344555532 2 46888876443

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.14  E-value=7.6e-05  Score=65.16  Aligned_cols=79  Identities=22%  Similarity=0.349  Sum_probs=56.3

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCC-------------------CCC-----------Ccc--c-
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKK-------------------PGV-----------SYP--F-  189 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~-------------------~~~-----------~~~--~-  189 (286)
                      ..|.+++|.|+|+|.+|..+|+.|...|. ++.++|+..-                   +..           ...  . 
T Consensus        27 ~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~  106 (249)
T 1jw9_B           27 EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV  106 (249)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEE
Confidence            35889999999999999999999999998 8999998751                   100           000  0 


Q ss_pred             ---c--cCHHHhhcCCCEEEEeccCChhhhhcccHHHHh
Q 043239          190 ---Y--ANVSGLAADSDVLIVCCALTEETHHMINKDVMT  223 (286)
Q Consensus       190 ---~--~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~  223 (286)
                         .  .+++++++++|+|+.+++ +.+++..+++....
T Consensus       107 ~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~  144 (249)
T 1jw9_B          107 NALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFA  144 (249)
T ss_dssp             CSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHH
T ss_pred             eccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHH
Confidence               1  134567788899888875 56677666655443

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.13  E-value=0.0012  Score=55.58  Aligned_cols=86  Identities=16%  Similarity=0.212  Sum_probs=59.3

Q ss_pred             CEEEEEc-CChHHHHHHHHhc-cCCCEEEEECCCCC-CCC-------Cc-------ccccCHHHhhcCCCEEEEeccCCh
Q 043239          149 KRVGIVG-LGSIGSEVAKRLV-PFGCSIAYTSRKKK-PGV-------SY-------PFYANVSGLAADSDVLIVCCALTE  211 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~-~~g~~V~~~~r~~~-~~~-------~~-------~~~~~l~e~l~~aDiV~~~lp~~~  211 (286)
                      ++|.|.| .|.||+.+++.|. ..|++|.+.+|+.+ ...       ..       ....+++++++.+|+|+.+.... 
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~-   84 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMES-   84 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCC-
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCC-
Confidence            5699999 6999999999999 89999999998765 321       11       11245667889999999887643 


Q ss_pred             hhhhcccHHHHhcCCC-C-cEEEEcCCCc
Q 043239          212 ETHHMINKDVMTALGK-E-GVIINVGRGA  238 (286)
Q Consensus       212 ~t~~~i~~~~l~~mk~-g-~ilvn~srg~  238 (286)
                      ...   .+..++.|+. + ..||++|...
T Consensus        85 n~~---~~~~~~~~~~~~~~~iv~iSs~~  110 (221)
T 3r6d_A           85 GSD---MASIVKALSRXNIRRVIGVSMAG  110 (221)
T ss_dssp             HHH---HHHHHHHHHHTTCCEEEEEEETT
T ss_pred             Chh---HHHHHHHHHhcCCCeEEEEeece
Confidence            111   3445555532 2 3677776443

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=97.13  E-value=0.0026  Score=56.98  Aligned_cols=154  Identities=17%  Similarity=0.138  Sum_probs=100.1

Q ss_pred             HHhccCCCccEEEEcCCCCCcCChhH-HhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCC
Q 043239           63 DTLSLLPALEIVVGSTAGIDHVDLQE-CRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYP  141 (286)
Q Consensus        63 ~~l~~~~~Lk~i~~~~~G~d~id~~~-~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~  141 (286)
                      .+++++.  -.|..+...  +=.+.. ++-.+|+|.|..+...-++  .+|+=++.+.++.         |         
T Consensus        95 rvls~~~--D~iviR~~~--~~~~~~la~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~---------g---------  150 (301)
T 2ef0_A           95 KNLERFV--EGIAARVFR--HETVEALARHAKVPVVNALSDRAHPL--QALADLLTLKEVF---------G---------  150 (301)
T ss_dssp             HHHTTTC--SEEEEECSS--HHHHHHHHHHCSSCEEEEECSSCCHH--HHHHHHHHHHHHH---------S---------
T ss_pred             HHHHHhC--CEEEEecCC--hHHHHHHHHHCCCCEEeCCCCccCch--HHHHHHHHHHHHh---------C---------
Confidence            4444443  445544332  222333 3445799999765433333  3444444433321         1         


Q ss_pred             CcccCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCCC-------cccccCHHHhhcCCCEEEEecc----C
Q 043239          142 LGSTLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGVS-------YPFYANVSGLAADSDVLIVCCA----L  209 (286)
Q Consensus       142 ~~~~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~-------~~~~~~l~e~l~~aDiV~~~lp----~  209 (286)
                         .+.|.+|+++|= +++..+++..+..+|++|.+..+..-....       +....+++|+++++|+|.+-.=    .
T Consensus       151 ---~l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~~~smg~  227 (301)
T 2ef0_A          151 ---GLAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTDVWTSMGQ  227 (301)
T ss_dssp             ---CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCSEEEECCCC----
T ss_pred             ---CcCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHHHhhceeEEECCHHHHhcCCCEEEecCcccCCc
Confidence               378999999996 899999999999999999988875543321       3346799999999999987321    0


Q ss_pred             ----Ch--h--hhhcccHHHHhcCCCCcEEEEcC---CCcccCHH
Q 043239          210 ----TE--E--THHMINKDVMTALGKEGVIINVG---RGALIDEK  243 (286)
Q Consensus       210 ----~~--~--t~~~i~~~~l~~mk~g~ilvn~s---rg~~vd~~  243 (286)
                          ..  .  ....++++.++.+|++++|.-+.   ||.=|+.+
T Consensus       228 ~~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mHplP~~Rg~EI~~e  272 (301)
T 2ef0_A          228 EAEREKRLRDFQGFQVNGELLKLLRPEGVFLHCLPAHYGEETTEE  272 (301)
T ss_dssp             ----CHHHHHTTTCCBCHHHHTTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             ccchhHHHHHhhccccCHHHHHhcCCCcEEECCCCCCCCCccCHH
Confidence                00  0  23557899999999999999997   56545544

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=97.13  E-value=0.00086  Score=61.07  Aligned_cols=101  Identities=18%  Similarity=0.208  Sum_probs=64.0

Q ss_pred             CEEEEEcCChHHHH-HHHHhccC-CCEEE-EECCCCCCC----CCcccccCHHHhhcC--CCEEEEeccCChhhhhcccH
Q 043239          149 KRVGIVGLGSIGSE-VAKRLVPF-GCSIA-YTSRKKKPG----VSYPFYANVSGLAAD--SDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       149 ~~vgIiG~G~iG~~-~A~~l~~~-g~~V~-~~~r~~~~~----~~~~~~~~l~e~l~~--aDiV~~~lp~~~~t~~~i~~  219 (286)
                      .+|||||+|.||+. .++.+... +++|. +++++.++.    .+...+.++++++++  .|+|++|+|........   
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~---   84 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPLA---   84 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHTTCSSCCEESCHHHHHHCSSCCEEEECSCTTTHHHHH---
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHH---
Confidence            58999999999997 78877765 67865 678776432    134457899999976  89999999865432221   


Q ss_pred             HHHhcCCCCc-EEEEcC-CCcccCHHHHHHHHHhCCe
Q 043239          220 DVMTALGKEG-VIINVG-RGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       220 ~~l~~mk~g~-ilvn~s-rg~~vd~~al~~al~~~~i  254 (286)
                        ...++.|. +++.-- .-.+-+.+.|.++.++.++
T Consensus        85 --~~al~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~  119 (352)
T 3kux_A           85 --QSALAAGKHVVVDKPFTVTLSQANALKEHADDAGL  119 (352)
T ss_dssp             --HHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHTTC
T ss_pred             --HHHHHCCCcEEEECCCcCCHHHHHHHHHHHHHcCC
Confidence              12233332 444322 2233445555555555444

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=97.13  E-value=0.00022  Score=64.73  Aligned_cols=101  Identities=21%  Similarity=0.267  Sum_probs=64.6

Q ss_pred             CEEEEEcCChHHHHHHHHhc-c-CCCEEE-EECCCCCCCC------C--cccccCHHHhhcC--CCEEEEeccCChhhhh
Q 043239          149 KRVGIVGLGSIGSEVAKRLV-P-FGCSIA-YTSRKKKPGV------S--YPFYANVSGLAAD--SDVLIVCCALTEETHH  215 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~-~-~g~~V~-~~~r~~~~~~------~--~~~~~~l~e~l~~--aDiV~~~lp~~~~t~~  215 (286)
                      .+|||||+|.||+..++.+. . -+++++ +++++.+...      +  ...+.++++++++  .|+|++|+|.......
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~   82 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAHESS   82 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHHH
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhHHHH
Confidence            48999999999999999998 5 467765 6888765421      3  3457899999976  8999999985433221


Q ss_pred             cccHHHHhcCCCCc-EEEEcC-CCcccCHHHHHHHHHhCCe
Q 043239          216 MINKDVMTALGKEG-VIINVG-RGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       216 ~i~~~~l~~mk~g~-ilvn~s-rg~~vd~~al~~al~~~~i  254 (286)
                      .  ..   .++.|. +++.-- .-.+-+.+.|.++.++.+.
T Consensus        83 ~--~~---al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~  118 (344)
T 3mz0_A           83 V--LK---AIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGK  118 (344)
T ss_dssp             H--HH---HHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSS
T ss_pred             H--HH---HHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCC
Confidence            1  12   233342 444322 2234455556665555443

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=97.11  E-value=0.00062  Score=64.93  Aligned_cols=110  Identities=15%  Similarity=0.203  Sum_probs=72.5

Q ss_pred             CCEEEEEcCChH--HHHHHHHhcc---C-CCEEEEECCCCCCCC-----------------CcccccCHHHhhcCCCEEE
Q 043239          148 GKRVGIVGLGSI--GSEVAKRLVP---F-GCSIAYTSRKKKPGV-----------------SYPFYANVSGLAADSDVLI  204 (286)
Q Consensus       148 g~~vgIiG~G~i--G~~~A~~l~~---~-g~~V~~~~r~~~~~~-----------------~~~~~~~l~e~l~~aDiV~  204 (286)
                      .++|+|||.|.|  |.++|..|..   + |.+|..||++.+...                 ......++++.+++||+|+
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI   82 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   82 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence            468999999997  4655666642   3 789999999775311                 1122357888999999999


Q ss_pred             EeccCCh-----------hhhhccc-------------------------HH---HHhcCCCCcEEEEcCCCcccCHHHH
Q 043239          205 VCCALTE-----------ETHHMIN-------------------------KD---VMTALGKEGVIINVGRGALIDEKEL  245 (286)
Q Consensus       205 ~~lp~~~-----------~t~~~i~-------------------------~~---~l~~mk~g~ilvn~srg~~vd~~al  245 (286)
                      +++|...           .-.+++.                         .+   .+....|+++++|++..--+-+.++
T Consensus        83 iaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~~~  162 (480)
T 1obb_A           83 NTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLV  162 (480)
T ss_dssp             ECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHHHH
T ss_pred             ECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence            9997411           0001100                         11   2333468999999988876666777


Q ss_pred             HHHHHhCCeeEEE
Q 043239          246 VHFLVRGSLVELV  258 (286)
Q Consensus       246 ~~al~~~~i~ga~  258 (286)
                      .+ +...++-|.+
T Consensus       163 ~k-~p~~rviG~c  174 (480)
T 1obb_A          163 TR-TVPIKAVGFC  174 (480)
T ss_dssp             HH-HSCSEEEEEC
T ss_pred             HH-CCCCcEEecC
Confidence            65 6666776664

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=97.10  E-value=0.0011  Score=59.97  Aligned_cols=101  Identities=20%  Similarity=0.174  Sum_probs=64.8

Q ss_pred             CEEEEEcCChHHHHHHHHhccCC---CEE-EEECCCCCCCC------Cc-ccccCHHHhhc--CCCEEEEeccCChhhhh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFG---CSI-AYTSRKKKPGV------SY-PFYANVSGLAA--DSDVLIVCCALTEETHH  215 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g---~~V-~~~~r~~~~~~------~~-~~~~~l~e~l~--~aDiV~~~lp~~~~t~~  215 (286)
                      .++||||+|.||+..++.++..+   +++ .+++++.++..      +. ..+.+++++++  +.|+|++++|...... 
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~-   81 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHKA-   81 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGHHH-
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHH-
Confidence            48999999999999999998654   455 46788765432      22 35789999997  5999999998543322 


Q ss_pred             cccHHHHhcCCCC-cEEEEc-CCCcccCHHHHHHHHHhCCe
Q 043239          216 MINKDVMTALGKE-GVIINV-GRGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       216 ~i~~~~l~~mk~g-~ilvn~-srg~~vd~~al~~al~~~~i  254 (286)
                       +....   ++.| .+++.- -.-++-+.+.|.++.++.++
T Consensus        82 -~~~~a---l~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~  118 (334)
T 3ohs_X           82 -AVMLC---LAAGKAVLCEKPMGVNAAEVREMVTEARSRGL  118 (334)
T ss_dssp             -HHHHH---HHTTCEEEEESSSSSSHHHHHHHHHHHHHTTC
T ss_pred             -HHHHH---HhcCCEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence             11222   3333 244442 12344555666666665544

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=97.09  E-value=0.0053  Score=55.76  Aligned_cols=149  Identities=10%  Similarity=0.032  Sum_probs=96.4

Q ss_pred             HHHhccCCCccEEEEcCCCCCcCChhH-HhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCC
Q 043239           62 SDTLSLLPALEIVVGSTAGIDHVDLQE-CRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAY  140 (286)
Q Consensus        62 ~~~l~~~~~Lk~i~~~~~G~d~id~~~-~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~  140 (286)
                      ..++.++.  -.|..+..  .+=.+.. ++-.+|+|.|..+...-++  .+|+=++.+.++                   
T Consensus        94 arvLs~~~--D~IviR~~--~~~~~~~lA~~s~vPVINa~~~~~HPt--Q~LaDl~Ti~e~-------------------  148 (335)
T 1dxh_A           94 ARVLGRMY--DAIEYRGF--KQEIVEELAKFAGVPVFNGLTDEYHPT--QMLADVLTMREH-------------------  148 (335)
T ss_dssp             HHHHHHHC--SEEEEECS--CHHHHHHHHHHSSSCEEEEECSSCCHH--HHHHHHHHHHHT-------------------
T ss_pred             HHHHHhhC--CEEEEecC--ChhHHHHHHHhCCCCEEcCCCCCCCcH--HHHHHHHHHHHH-------------------
Confidence            34444443  44555543  2322333 3445799999765333332  334444443332                   


Q ss_pred             CCcccCCCCEEEEEcCC--hHHHHHHHHhccCCCEEEEECCCCCCCC--------------C--cccccCHHHhhcCCCE
Q 043239          141 PLGSTLGGKRVGIVGLG--SIGSEVAKRLVPFGCSIAYTSRKKKPGV--------------S--YPFYANVSGLAADSDV  202 (286)
Q Consensus       141 ~~~~~l~g~~vgIiG~G--~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------------~--~~~~~~l~e~l~~aDi  202 (286)
                       .|..+.|.+|+++|=|  +++.+++..+..+|++|.+..+..-...              +  +....+++|+++++|+
T Consensus       149 -~g~~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDv  227 (335)
T 1dxh_A          149 -SDKPLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDF  227 (335)
T ss_dssp             -CSSCGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSE
T ss_pred             -cCCCcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCE
Confidence             1224789999999986  9999999999999999998887543222              1  2235789999999999


Q ss_pred             EEEecc----C----Chh-----hhhcccHHHHhcC-CCCcEEEEcCC
Q 043239          203 LIVCCA----L----TEE-----THHMINKDVMTAL-GKEGVIINVGR  236 (286)
Q Consensus       203 V~~~lp----~----~~~-----t~~~i~~~~l~~m-k~g~ilvn~sr  236 (286)
                      |.+-.=    .    ..+     ...-++.+.++.+ ||+++|.-+.-
T Consensus       228 vytd~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP  275 (335)
T 1dxh_A          228 VHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLP  275 (335)
T ss_dssp             EEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECSC
T ss_pred             EEeCCccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCCC
Confidence            987322    0    011     2356789999999 99999999853

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=97.09  E-value=0.00076  Score=61.60  Aligned_cols=103  Identities=15%  Similarity=0.161  Sum_probs=69.3

Q ss_pred             CEEEEEcCChHHHHHHHHhccC-CCEE-EEECCCCCCCC------C----cccccCHHHhhc--CCCEEEEeccCChhhh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF-GCSI-AYTSRKKKPGV------S----YPFYANVSGLAA--DSDVLIVCCALTEETH  214 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~-g~~V-~~~~r~~~~~~------~----~~~~~~l~e~l~--~aDiV~~~lp~~~~t~  214 (286)
                      .+|||||+|.||+.+++.+... ++++ .+++++.++..      +    ...+.+++++++  +.|+|++++|......
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   86 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE   86 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHHHH
Confidence            5899999999999999998865 5676 47888765321      2    234678999986  5999999998442211


Q ss_pred             hcccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHhCCeeE
Q 043239          215 HMINKDVMTALGKEG-VIINV-GRGALIDEKELVHFLVRGSLVE  256 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~-ilvn~-srg~~vd~~al~~al~~~~i~g  256 (286)
                           -....++.|. +++.- -.-++-+.+.|.++.++.++..
T Consensus        87 -----~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~  125 (362)
T 1ydw_A           87 -----WAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQI  125 (362)
T ss_dssp             -----HHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE
T ss_pred             -----HHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCEE
Confidence                 2223455665 55543 1234456678888888776653

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=97.09  E-value=0.00051  Score=58.66  Aligned_cols=62  Identities=13%  Similarity=0.112  Sum_probs=43.3

Q ss_pred             CEEEEEcCChHHHHHHHH--hccCCCEEE-EECCCCCCCC----C--cccccCHHHhhcCCCEEEEeccCC
Q 043239          149 KRVGIVGLGSIGSEVAKR--LVPFGCSIA-YTSRKKKPGV----S--YPFYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~--l~~~g~~V~-~~~r~~~~~~----~--~~~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      .+++|+|+|.+|+.+++.  ....|+++. ++|.++++..    +  +....++++++++.|++++++|..
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs~  156 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPAV  156 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCHH
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCch
Confidence            479999999999999994  345578765 6777766543    2  123567889887779999999843

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=97.09  E-value=0.00068  Score=60.64  Aligned_cols=110  Identities=21%  Similarity=0.223  Sum_probs=70.3

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC---------------C--cccccCHHHhhcCCCEEEEeccC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV---------------S--YPFYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~---------------~--~~~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      ++|+|+|.|.+|.++|..|...|.  +|..+|++.+...               .  .....+ .+.+++||+|+++.+.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~   79 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence            589999999999999999988787  8999998764321               0  111235 7889999999998653


Q ss_pred             Chh---hh--------hcccH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHH----HhCCeeEEE--eec
Q 043239          210 TEE---TH--------HMINK--DVMTALGKEGVIINVGRGALIDEKELVHFL----VRGSLVELV--LMC  261 (286)
Q Consensus       210 ~~~---t~--------~~i~~--~~l~~mk~g~ilvn~srg~~vd~~al~~al----~~~~i~ga~--lDv  261 (286)
                      ...   ++        .++..  +.+....|++++++++  .++|.-..+-.-    ...++.|.+  ||.
T Consensus        80 ~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs--NPvd~~t~~~~k~~g~p~~rviG~gt~LD~  148 (294)
T 1oju_A           80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVMTYIMWKESGKPRNEVFGMGNQLDS  148 (294)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHHHHHHHHHSCCCTTSEEECSHHHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--CcchHHHHHHHHhcCCCHHHEeecccccHH
Confidence            211   11        11110  1233447889999997  555544333221    134566653  664

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=97.05  E-value=0.00091  Score=60.54  Aligned_cols=109  Identities=18%  Similarity=0.236  Sum_probs=67.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC---------------Ccccc-cCHHHhhcCCCEEEEeccC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV---------------SYPFY-ANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~---------------~~~~~-~~l~e~l~~aDiV~~~lp~  209 (286)
                      ..++|+|||.|.||.++|..+...|+ +|..+|+..+...               ..... .+-.+.+++||+|+++.+.
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag~   83 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGV   83 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCCc
Confidence            35799999999999999999987777 9999999875421               11111 1224789999999998643


Q ss_pred             Chhhhhc-----c--c----HH---HHhcCCCCcEEEEcCCCcccCHHH--HHHH--HHhCCeeEEE
Q 043239          210 TEETHHM-----I--N----KD---VMTALGKEGVIINVGRGALIDEKE--LVHF--LVRGSLVELV  258 (286)
Q Consensus       210 ~~~t~~~-----i--~----~~---~l~~mk~g~ilvn~srg~~vd~~a--l~~a--l~~~~i~ga~  258 (286)
                      . ...++     +  |    ++   .+....|++++++++.  ++|.-.  +.+.  +...++.|.+
T Consensus        84 p-~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN--Pvd~~t~~~~k~sg~p~~rviG~~  147 (321)
T 3p7m_A           84 P-RKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITN--PLDIMVNMLQKFSGVPDNKIVGMA  147 (321)
T ss_dssp             C-CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS--SHHHHHHHHHHHHCCCGGGEEEEC
T ss_pred             C-CCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecC--chHHHHHHHHHhcCCCHHHEEeec
Confidence            2 11111     1  1    11   1222358899999954  444433  3332  2224566654

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=97.05  E-value=0.0013  Score=60.09  Aligned_cols=101  Identities=15%  Similarity=0.172  Sum_probs=63.5

Q ss_pred             CEEEEEcCChHHHH-HHHHhccC-CCEEE-EECCCCCCCC----CcccccCHHHhhcC--CCEEEEeccCChhhhhcccH
Q 043239          149 KRVGIVGLGSIGSE-VAKRLVPF-GCSIA-YTSRKKKPGV----SYPFYANVSGLAAD--SDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       149 ~~vgIiG~G~iG~~-~A~~l~~~-g~~V~-~~~r~~~~~~----~~~~~~~l~e~l~~--aDiV~~~lp~~~~t~~~i~~  219 (286)
                      .+|||||+|.||+. .+..++.. +++|+ +++++.++..    +...+.++++++++  .|+|++|+|.......  ..
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~--~~   83 (362)
T 3fhl_A            6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKERYPQASIVRSFKELTEDPEIDLIVVNTPDNTHYEY--AG   83 (362)
T ss_dssp             EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGTTCTTSEEESCSHHHHTCTTCCEEEECSCGGGHHHH--HH
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHHhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHH--HH
Confidence            58999999999997 77777665 67775 6788765422    23456899999977  8999999985433221  12


Q ss_pred             HHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHhCCe
Q 043239          220 DVMTALGKE-GVIINVG-RGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       220 ~~l~~mk~g-~ilvn~s-rg~~vd~~al~~al~~~~i  254 (286)
                      ..   ++.| .+++.-- .-++-+.+.|.++.++.++
T Consensus        84 ~a---l~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~  117 (362)
T 3fhl_A           84 MA---LEAGKNVVVEKPFTSTTKQGEELIALAKKKGL  117 (362)
T ss_dssp             HH---HHTTCEEEEESSCCSSHHHHHHHHHHHHHHTC
T ss_pred             HH---HHCCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence            22   3333 3444322 2234455556655554333

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=97.04  E-value=0.002  Score=61.42  Aligned_cols=98  Identities=14%  Similarity=0.192  Sum_probs=70.9

Q ss_pred             cCCCCEEEEEcCC----------hHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhh
Q 043239          145 TLGGKRVGIVGLG----------SIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETH  214 (286)
Q Consensus       145 ~l~g~~vgIiG~G----------~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~  214 (286)
                      .+.|++|+|+|+-          .-...+++.|...|.+|.+||+............++++.++++|.|++++. .++-+
T Consensus       350 ~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~ad~vvi~t~-~~~f~  428 (478)
T 3g79_A          350 KMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDNLEEVVRNADAIVVLAG-HSAYS  428 (478)
T ss_dssp             CSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCBTTBCEESCHHHHHTTCSEEEECSC-CHHHH
T ss_pred             CCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCcccccCcceecCHHHHHhcCCEEEEecC-CHHHH
Confidence            4689999999975          347889999999999999999977643333345789999999999999875 34444


Q ss_pred             hcccHHHHhcCC-CCcEEEEcCCCcccCHHHH
Q 043239          215 HMINKDVMTALG-KEGVIINVGRGALIDEKEL  245 (286)
Q Consensus       215 ~~i~~~~l~~mk-~g~ilvn~srg~~vd~~al  245 (286)
                      .+--....+.|+ +..+|+|. |+- .|.+.+
T Consensus       429 ~~d~~~~~~~~~~~~~~i~D~-rn~-~~~~~~  458 (478)
T 3g79_A          429 SLKADWAKKVSAKANPVIIDG-RNV-IEPDEF  458 (478)
T ss_dssp             SCCHHHHHHHHCCSSCEEEES-SSC-SCHHHH
T ss_pred             hhhHHHHHHHhccCCCEEEEC-CCC-CCHHHH
Confidence            332234556677 47899996 554 554433

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=97.03  E-value=0.00065  Score=63.88  Aligned_cols=103  Identities=15%  Similarity=0.143  Sum_probs=65.3

Q ss_pred             CCEEEEEcCChHHH-HHHHHhccC-CCEE-EEECCCCCCCC------Ccc-----cccCHHHhhc--CCCEEEEeccCCh
Q 043239          148 GKRVGIVGLGSIGS-EVAKRLVPF-GCSI-AYTSRKKKPGV------SYP-----FYANVSGLAA--DSDVLIVCCALTE  211 (286)
Q Consensus       148 g~~vgIiG~G~iG~-~~A~~l~~~-g~~V-~~~~r~~~~~~------~~~-----~~~~l~e~l~--~aDiV~~~lp~~~  211 (286)
                      -.+|||||+|.||+ .+++.+... ++++ .+++++.+...      +..     .+.+++++++  +.|+|++++|...
T Consensus        83 ~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~  162 (433)
T 1h6d_A           83 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSL  162 (433)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGG
T ss_pred             ceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchh
Confidence            45899999999997 899998875 5675 47888765321      222     3678999987  7999999998543


Q ss_pred             hhhhcccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHhCCee
Q 043239          212 ETHHMINKDVMTALGKEG-VIINV-GRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       212 ~t~~~i~~~~l~~mk~g~-ilvn~-srg~~vd~~al~~al~~~~i~  255 (286)
                      ....     ....++.|. +++.- ..-++-+.+.|.++.++.++.
T Consensus       163 h~~~-----~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~  203 (433)
T 1h6d_A          163 HAEF-----AIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKK  203 (433)
T ss_dssp             HHHH-----HHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCC
T ss_pred             HHHH-----HHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCe
Confidence            3221     222344453 55542 122334455666666654443

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=97.02  E-value=0.0028  Score=56.32  Aligned_cols=101  Identities=17%  Similarity=0.206  Sum_probs=64.4

Q ss_pred             CEEEEEcCChHHHHHHHHhcc----CCCEEE-EECCCCCCCC-CcccccCHHHhhc--CCCEEEEeccCChhhhhcccHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVP----FGCSIA-YTSRKKKPGV-SYPFYANVSGLAA--DSDVLIVCCALTEETHHMINKD  220 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~----~g~~V~-~~~r~~~~~~-~~~~~~~l~e~l~--~aDiV~~~lp~~~~t~~~i~~~  220 (286)
                      .+|||||+|.||+..++.+..    -+++++ +++++..... +.. +.+++++++  +.|+|++++|......  +   
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H~~--~---   81 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVR-QISLEDALRSQEIDVAYICSESSSHED--Y---   81 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEETTEE-BCCHHHHHHCSSEEEEEECSCGGGHHH--H---
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHHHHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhHHH--H---
Confidence            589999999999999998875    356665 6777542211 222 478999987  6899999998543222  1   


Q ss_pred             HHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHhCCee
Q 043239          221 VMTALGKEG-VIINV-GRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       221 ~l~~mk~g~-ilvn~-srg~~vd~~al~~al~~~~i~  255 (286)
                      ....++.|. +++.- ..-.+-+.+.|.++.++.+..
T Consensus        82 ~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~  118 (294)
T 1lc0_A           82 IRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRV  118 (294)
T ss_dssp             HHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCE
Confidence            223334443 66663 222444557777777665544

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=97.00  E-value=0.011  Score=53.68  Aligned_cols=133  Identities=17%  Similarity=0.175  Sum_probs=88.3

Q ss_pred             HhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcC-ChHHHHHHHHh
Q 043239           89 CRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGL-GSIGSEVAKRL  167 (286)
Q Consensus        89 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~-G~iG~~~A~~l  167 (286)
                      ++..+|+|.|..+...-++  .+|+=++.+.++.                  +.|..+.|.+|+++|= +++..+++..+
T Consensus       136 A~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~~------------------~~G~~l~glkva~vGD~~rva~Sl~~~~  195 (339)
T 4a8t_A          136 ANCATIPVINGMSDYNHPT--QELGDLCTMVEHL------------------PEGKKLEDCKVVFVGDATQVCFSLGLIT  195 (339)
T ss_dssp             HHHCSSCEEECCCSSCCHH--HHHHHHHHHHHTC------------------CTTCCGGGCEEEEESSCCHHHHHHHHHH
T ss_pred             HHhCCCCEEECCCCCcCcH--HHHHHHHHHHHHh------------------hcCCCCCCCEEEEECCCchhHHHHHHHH
Confidence            4556899999876433232  3344344433331                  0132588999999994 78999999999


Q ss_pred             ccCCCEEEEECCCCCCCC--------------C--cccccCHHHhhcCCCEEEEec----cCC----hh----h--hhcc
Q 043239          168 VPFGCSIAYTSRKKKPGV--------------S--YPFYANVSGLAADSDVLIVCC----ALT----EE----T--HHMI  217 (286)
Q Consensus       168 ~~~g~~V~~~~r~~~~~~--------------~--~~~~~~l~e~l~~aDiV~~~l----p~~----~~----t--~~~i  217 (286)
                      ..+|++|.+..+..-...              +  +....+++ +++++|+|.+-+    ...    .+    .  ...+
T Consensus       196 ~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~-av~~aDvvytd~w~smg~~~~~~~er~~~~~~~y~v  274 (339)
T 4a8t_A          196 TKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDVWYGLYEAELSEEERMKVFYPKYQV  274 (339)
T ss_dssp             HHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEECCGG-GGTTCSEEEECCSSCCTTSCCCHHHHHHHHTTTTCB
T ss_pred             HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEECChh-HHcCCCEEEecCcccCCchhhhhHHHHHHhcccccc
Confidence            999999998887543322              1  22357888 999999998632    110    11    1  2557


Q ss_pred             cHHHHhcCCCCcEEEEcC---CCcccCH
Q 043239          218 NKDVMTALGKEGVIINVG---RGALIDE  242 (286)
Q Consensus       218 ~~~~l~~mk~g~ilvn~s---rg~~vd~  242 (286)
                      +.+.++.+|++++|.-+.   ||.=|+.
T Consensus       275 t~ell~~ak~dai~mHcLPa~Rg~EIt~  302 (339)
T 4a8t_A          275 NQEMMDRAGANCKFMHCLPATRGEEVTD  302 (339)
T ss_dssp             CHHHHHHHCTTCEEEECSCCCBTTTBCH
T ss_pred             CHHHHHhcCCCcEEECCCCCCCCCeeCH
Confidence            888999999999999986   5654443

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.98  E-value=0.0005  Score=58.78  Aligned_cols=84  Identities=13%  Similarity=0.085  Sum_probs=56.3

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC----CCccc----c---cCHHHh-hcCCCEEEEeccCChhhhh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG----VSYPF----Y---ANVSGL-AADSDVLIVCCALTEETHH  215 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~----~~~~~----~---~~l~e~-l~~aDiV~~~lp~~~~t~~  215 (286)
                      .+++.|+|+|.+|+.+++.|...|+ |++.+++++..    .+...    .   ..++++ +.++|.|++++|....+. 
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~-   86 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETI-   86 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHHTTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHHH-
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHhcCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHHH-
Confidence            4689999999999999999999999 99999876532    11111    1   233344 788999999988543332 


Q ss_pred             cccHHHHhcCCCC-cEEEEc
Q 043239          216 MINKDVMTALGKE-GVIINV  234 (286)
Q Consensus       216 ~i~~~~l~~mk~g-~ilvn~  234 (286)
                       .-......+.++ .+++.+
T Consensus        87 -~~~~~a~~~~~~~~iia~~  105 (234)
T 2aef_A           87 -HCILGIRKIDESVRIIAEA  105 (234)
T ss_dssp             -HHHHHHHHHCSSSEEEEEC
T ss_pred             -HHHHHHHHHCCCCeEEEEE
Confidence             223445556666 445544

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.97  E-value=0.00072  Score=61.03  Aligned_cols=116  Identities=16%  Similarity=0.238  Sum_probs=70.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC---------------CcccccCHHHhhcCCCEEEEeccC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV---------------SYPFYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~---------------~~~~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      ..++|+|||.|.+|.+++..|...|.  +|..+|...++..               ......+..+.+++||+|+++.+.
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~   84 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGA   84 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCC
Confidence            34699999999999999999887674  8999998653211               001112446779999999999864


Q ss_pred             Chhh---h--------hcccH--HHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCeeEE--Eeecc
Q 043239          210 TEET---H--------HMINK--DVMTALGKEGVIINVGRGALIDEKELVHF--LVRGSLVEL--VLMCL  262 (286)
Q Consensus       210 ~~~t---~--------~~i~~--~~l~~mk~g~ilvn~srg~~vd~~al~~a--l~~~~i~ga--~lDv~  262 (286)
                      ....   +        .++..  +.+....|++++++++..-=+....+.+.  +...++.|.  .||..
T Consensus        85 ~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~k~~~~p~~rviG~gt~lD~~  154 (317)
T 3d0o_A           85 AQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDILAYATWKFSGLPKERVIGSGTILDSA  154 (317)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHHHHHhCCCHHHEEecCccccHH
Confidence            3211   0        11110  12223378999999864433333444443  334466555  25643

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=96.97  E-value=0.00037  Score=66.41  Aligned_cols=111  Identities=12%  Similarity=0.098  Sum_probs=72.3

Q ss_pred             CCEEEEEcCChH-HHHHHHHhccC-----CCEEEEECCCCCCCC---------------C--cccccCHHHhhcCCCEEE
Q 043239          148 GKRVGIVGLGSI-GSEVAKRLVPF-----GCSIAYTSRKKKPGV---------------S--YPFYANVSGLAADSDVLI  204 (286)
Q Consensus       148 g~~vgIiG~G~i-G~~~A~~l~~~-----g~~V~~~~r~~~~~~---------------~--~~~~~~l~e~l~~aDiV~  204 (286)
                      .++|+|||.|.. |.++|..|...     +.+|..||+..+...               .  .....++++.+++||+|+
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VV  107 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM  107 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEE
Confidence            469999999998 66677666544     568999999775311               1  112357888999999999


Q ss_pred             EeccCChh---hh----------------------------hccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239          205 VCCALTEE---TH----------------------------HMIN--KDVMTALGKEGVIINVGRGALIDEKELVHFLVR  251 (286)
Q Consensus       205 ~~lp~~~~---t~----------------------------~~i~--~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~  251 (286)
                      +++|....   ++                            .++.  .+.+....|+++++|++..--+-+.++.+....
T Consensus       108 iaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k~~p~  187 (472)
T 1u8x_X          108 AHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPN  187 (472)
T ss_dssp             ECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHHSTT
T ss_pred             EcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhCCC
Confidence            99986321   11                            1110  012233468999999988766666666665544


Q ss_pred             CCeeEEE
Q 043239          252 GSLVELV  258 (286)
Q Consensus       252 ~~i~ga~  258 (286)
                      .++.|.+
T Consensus       188 ~rViG~c  194 (472)
T 1u8x_X          188 SKILNIC  194 (472)
T ss_dssp             CCEEECC
T ss_pred             CCEEEeC
Confidence            4666654

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.97  E-value=0.00049  Score=65.17  Aligned_cols=64  Identities=19%  Similarity=0.181  Sum_probs=48.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------C-cc----cc---cCHHHhhcCCCEEEEeccCC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------S-YP----FY---ANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~-~~----~~---~~l~e~l~~aDiV~~~lp~~  210 (286)
                      .+++|+|+|.|.||+.+++.|...|++|.+++|+.++..      + ..    ..   .++.++++++|+|+.+.|..
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~   79 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT   79 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence            367999999999999999999999999999998754311      1 10    11   24557788999999999864

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=96.96  E-value=0.0097  Score=54.40  Aligned_cols=133  Identities=17%  Similarity=0.183  Sum_probs=88.3

Q ss_pred             HhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEc-CChHHHHHHHHh
Q 043239           89 CRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVG-LGSIGSEVAKRL  167 (286)
Q Consensus        89 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG-~G~iG~~~A~~l  167 (286)
                      +...+|+|.|..+...-++  .+|+=++.+.++.                  +.|..+.|.+|+++| .+++..+++..+
T Consensus       114 A~~~~vPVINag~~~~HPt--QaLaDl~TI~E~~------------------~~G~~l~glkva~vGD~~rva~Sl~~~~  173 (355)
T 4a8p_A          114 ANCATIPVINGMSDYNHPT--QELGDLCTMVEHL------------------PEGKKLEDCKVVFVGDATQVCFSLGLIT  173 (355)
T ss_dssp             HHHCSSCEEECCCSSCCHH--HHHHHHHHHHHTC------------------CTTCCGGGCEEEEESCCCHHHHHHHHHH
T ss_pred             HHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHh------------------hcCCCCCCCEEEEECCCchhHHHHHHHH
Confidence            4556899999876333232  3344344433331                  013248899999999 478999999999


Q ss_pred             ccCCCEEEEECCCCCCCC--------------C--cccccCHHHhhcCCCEEEEec----cCC----hh-----h-hhcc
Q 043239          168 VPFGCSIAYTSRKKKPGV--------------S--YPFYANVSGLAADSDVLIVCC----ALT----EE-----T-HHMI  217 (286)
Q Consensus       168 ~~~g~~V~~~~r~~~~~~--------------~--~~~~~~l~e~l~~aDiV~~~l----p~~----~~-----t-~~~i  217 (286)
                      ..+|++|.+..+..-...              +  +....+++ +++++|+|.+-+    ...    .+     . ...+
T Consensus       174 ~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~-av~~aDVVytd~w~smgq~~~~~~er~~~~~~~y~v  252 (355)
T 4a8p_A          174 TKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDVWYGLYEAELSEEERMKVFYPKYQV  252 (355)
T ss_dssp             HHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEECCGG-GGTTCSEEEECCSSEETTEECCHHHHHHHHTTTTCB
T ss_pred             HHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEECCHH-HHcCCCEEEecccccCcchhhhhHHHHHHhcccccc
Confidence            999999998887543322              1  22357888 999999998622    110    11     1 2557


Q ss_pred             cHHHHhcCCCCcEEEEcC---CCcccCH
Q 043239          218 NKDVMTALGKEGVIINVG---RGALIDE  242 (286)
Q Consensus       218 ~~~~l~~mk~g~ilvn~s---rg~~vd~  242 (286)
                      +.+.++.+|++++|.-+.   ||.=|+.
T Consensus       253 t~ell~~ak~dai~MHcLPa~Rg~EIt~  280 (355)
T 4a8p_A          253 NQEMMDRAGANCKFMHCLPATRGEEVTD  280 (355)
T ss_dssp             CHHHHHHHCTTCEEEECSCCCBTTTBCH
T ss_pred             CHHHHHhcCCCcEEECCCCCCCCCeeCH
Confidence            888999999999999986   5644443

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=96.95  E-value=0.0011  Score=61.12  Aligned_cols=61  Identities=31%  Similarity=0.415  Sum_probs=46.9

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-C---c---cccc---CHHHhhcCCCEEEE
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-S---Y---PFYA---NVSGLAADSDVLIV  205 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-~---~---~~~~---~l~e~l~~aDiV~~  205 (286)
                      -+.|++|+|+|.|.+|+.+++.++.+|++|+++|+.+.... .   .   ..+.   .+.++++++|+|+.
T Consensus        11 ~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~   81 (389)
T 3q2o_A           11 ILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTY   81 (389)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeee
Confidence            47899999999999999999999999999999987654321 1   0   0122   36678889999854

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=96.94  E-value=0.0064  Score=54.79  Aligned_cols=154  Identities=16%  Similarity=0.239  Sum_probs=99.3

Q ss_pred             HHHhccCCCccEEEEcCCCCCcCChhH-HhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCC
Q 043239           62 SDTLSLLPALEIVVGSTAGIDHVDLQE-CRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAY  140 (286)
Q Consensus        62 ~~~l~~~~~Lk~i~~~~~G~d~id~~~-~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~  140 (286)
                      ..+++++.  -.|..+...  +=.+.. ++-.+|+|.|..+...-++  .+|+=++.+.++.         |        
T Consensus        95 arvls~~~--D~iviR~~~--~~~~~~lA~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~---------g--------  151 (315)
T 1pvv_A           95 ARVLSRYV--DAIMARVYD--HKDVEDLAKYATVPVINGLSDFSHPC--QALADYMTIWEKK---------G--------  151 (315)
T ss_dssp             HHHHTTTC--SEEEEECSS--HHHHHHHHHHCSSCEEEEECSSCCHH--HHHHHHHHHHHHH---------S--------
T ss_pred             HHHHHHhC--cEEEEecCc--hHHHHHHHHhCCCCEEcCCCCCCCcH--HHHHHHHHHHHHh---------C--------
Confidence            34445543  455555432  222333 3445799999755433332  3444444433321         1        


Q ss_pred             CCcccCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC--------------C--cccccCHHHhhcCCCEE
Q 043239          141 PLGSTLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV--------------S--YPFYANVSGLAADSDVL  203 (286)
Q Consensus       141 ~~~~~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------------~--~~~~~~l~e~l~~aDiV  203 (286)
                          .+.|.+|+++|= +++..+++..+..+|++|.+..+..-...              +  +....+++|+++++|+|
T Consensus       152 ----~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvv  227 (315)
T 1pvv_A          152 ----TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVI  227 (315)
T ss_dssp             ----CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEE
T ss_pred             ----CcCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEE
Confidence                378999999996 89999999999999999998887543322              1  22357899999999999


Q ss_pred             EEeccC-------Chh-----hhhcccHHHHhcCCCCcEEEEcC---CCcccCH
Q 043239          204 IVCCAL-------TEE-----THHMINKDVMTALGKEGVIINVG---RGALIDE  242 (286)
Q Consensus       204 ~~~lp~-------~~~-----t~~~i~~~~l~~mk~g~ilvn~s---rg~~vd~  242 (286)
                      .+-.=.       .++     ....++.+.++.+|++++|.-+.   ||.=|+.
T Consensus       228 y~~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~lP~~Rg~EI~~  281 (315)
T 1pvv_A          228 YTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTD  281 (315)
T ss_dssp             EECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSCCCBTTTBCH
T ss_pred             EEcceeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCCCCCCCCccCH
Confidence            883210       111     23567899999999999999996   4554443

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.93  E-value=0.00066  Score=61.61  Aligned_cols=91  Identities=20%  Similarity=0.339  Sum_probs=59.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC---------------CcccccCHHHhhcCCCEEEEeccC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV---------------SYPFYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~---------------~~~~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      ..++|+|||.|.||.++|..|...|.  +|..+|+..++..               ......+..+.+++||+|+++.+.
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~   83 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGA   83 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEeccc
Confidence            35699999999999999999988776  8999998654321               011112234678999999998753


Q ss_pred             Chh---hh-hcc--c----HH---HHhcCCCCcEEEEcCCC
Q 043239          210 TEE---TH-HMI--N----KD---VMTALGKEGVIINVGRG  237 (286)
Q Consensus       210 ~~~---t~-~~i--~----~~---~l~~mk~g~ilvn~srg  237 (286)
                      ...   ++ .++  +    ++   .+....|.+++++++..
T Consensus        84 p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNP  124 (326)
T 3pqe_A           84 NQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNP  124 (326)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCh
Confidence            211   11 111  1    11   23334678999999754

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=96.92  E-value=0.0057  Score=55.58  Aligned_cols=131  Identities=13%  Similarity=0.113  Sum_probs=88.2

Q ss_pred             HhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcC-ChHHHHHHHHh
Q 043239           89 CRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGL-GSIGSEVAKRL  167 (286)
Q Consensus        89 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~-G~iG~~~A~~l  167 (286)
                      ++..+|+|.|..+...-++  .+|+=++.+.++.                    | .+.|.+|+++|= +++..+++..+
T Consensus       143 A~~~~vPVINag~~~~HPt--QaLaDl~TI~E~~--------------------G-~l~glkva~vGD~~nva~Sl~~~~  199 (340)
T 4ep1_A          143 AKESSIPVINGLTDDHHPC--QALADLMTIYEET--------------------N-TFKGIKLAYVGDGNNVCHSLLLAS  199 (340)
T ss_dssp             HHHCSSCEEEEECSSCCHH--HHHHHHHHHHHHH--------------------S-CCTTCEEEEESCCCHHHHHHHHHH
T ss_pred             HHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHh--------------------C-CCCCCEEEEECCCchhHHHHHHHH
Confidence            4456799999765333222  3333333333321                    1 278999999995 67899999999


Q ss_pred             ccCCCEEEEECCCCCCCC--------------C--cccccCHHHhhcCCCEEEEeccCC------hh-----hhhcccHH
Q 043239          168 VPFGCSIAYTSRKKKPGV--------------S--YPFYANVSGLAADSDVLIVCCALT------EE-----THHMINKD  220 (286)
Q Consensus       168 ~~~g~~V~~~~r~~~~~~--------------~--~~~~~~l~e~l~~aDiV~~~lp~~------~~-----t~~~i~~~  220 (286)
                      ..+|++|.+..+..-...              +  +....+++|+++++|+|.+-.=..      ++     ....++.+
T Consensus       200 ~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDVvyt~~w~smg~e~~~~~~~~~~~y~vt~e  279 (340)
T 4ep1_A          200 AKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDVWMSMGQEGEEEKYTLFQPYQINKE  279 (340)
T ss_dssp             HHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHHHHHTTCSEEEECCC------CHHHHHHHHGGGCBCHH
T ss_pred             HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHHHHhCCCCEEEecCccCCCCCchHHHHHHhccccCCHH
Confidence            999999998887543322              1  223578999999999997643211      00     13457899


Q ss_pred             HHhcCCCCcEEEEcC---CCcccCH
Q 043239          221 VMTALGKEGVIINVG---RGALIDE  242 (286)
Q Consensus       221 ~l~~mk~g~ilvn~s---rg~~vd~  242 (286)
                      .++.+|++++|.-+.   ||.=|+.
T Consensus       280 ll~~ak~dai~MHcLPa~Rg~EIt~  304 (340)
T 4ep1_A          280 LVKHAKQTYHFLHCLPAHREEEVTG  304 (340)
T ss_dssp             HHTTSCTTCEEEECSCCCBTTTBCH
T ss_pred             HHHhcCCCcEEECCCCCCCCceeCH
Confidence            999999999999997   6754443

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=96.91  E-value=0.0053  Score=54.93  Aligned_cols=90  Identities=17%  Similarity=0.166  Sum_probs=69.7

Q ss_pred             CCCCEEEEEcC---ChHHHHHHHHhccC-CCEEEEECCCCCCCC-------C--cccccCHHHhhcCCCEEEEeccCCh-
Q 043239          146 LGGKRVGIVGL---GSIGSEVAKRLVPF-GCSIAYTSRKKKPGV-------S--YPFYANVSGLAADSDVLIVCCALTE-  211 (286)
Q Consensus       146 l~g~~vgIiG~---G~iG~~~A~~l~~~-g~~V~~~~r~~~~~~-------~--~~~~~~l~e~l~~aDiV~~~lp~~~-  211 (286)
                      +.|.+|+++|=   |++..+++..+..+ |++|.+..+..-...       +  +....+++|+++++|+|.+-.--.+ 
T Consensus       147 l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~er  226 (299)
T 1pg5_A          147 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER  226 (299)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred             cCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCccccc
Confidence            78999999997   69999999999999 999998886443221       2  2235789999999999977543221 


Q ss_pred             -----h-h----hhcccHHHHhcCCCCcEEEEcC
Q 043239          212 -----E-T----HHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       212 -----~-t----~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                           + .    ...++.+.++.+|++++|.-+.
T Consensus       227 ~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l  260 (299)
T 1pg5_A          227 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL  260 (299)
T ss_dssp             SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred             ccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCC
Confidence                 1 1    3557889999999999999886

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.91  E-value=0.003  Score=52.92  Aligned_cols=62  Identities=19%  Similarity=0.204  Sum_probs=48.2

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCCC----------ccc-ccCHHHhhcCCCEEEEeccCC
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS----------YPF-YANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~----------~~~-~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      |+|.|.| .|.||+.+++.|.+.|++|.+.+|+..+...          ... ..++.++++++|+|+.+....
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~   74 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSG   74 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCT
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcCC
Confidence            4789999 8999999999999999999999998754321          112 234566788999999887654

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=96.88  E-value=0.0014  Score=59.90  Aligned_cols=101  Identities=15%  Similarity=0.173  Sum_probs=63.8

Q ss_pred             CEEEEEcCChHHHH-HHHHhccC-CCEEE-EECCCCCCC----CCcccccCHHHhhc--CCCEEEEeccCChhhhhcccH
Q 043239          149 KRVGIVGLGSIGSE-VAKRLVPF-GCSIA-YTSRKKKPG----VSYPFYANVSGLAA--DSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       149 ~~vgIiG~G~iG~~-~A~~l~~~-g~~V~-~~~r~~~~~----~~~~~~~~l~e~l~--~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      .+|||||+|.||+. .++.++.. +++|+ +++++.++.    .+...+.+++++++  +.|+|++|+|........   
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~---   82 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDFPDAEVVHELEEITNDPAIELVIVTTPSGLHYEHT---   82 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHHHCTTSEEESSTHHHHTCTTCCEEEECSCTTTHHHHH---
T ss_pred             ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEcCCcHHHHHHH---
Confidence            58999999999997 78877765 67765 678776432    13445789999997  689999999965432221   


Q ss_pred             HHHhcCCCCc-EEEEcC-CCcccCHHHHHHHHHhCCe
Q 043239          220 DVMTALGKEG-VIINVG-RGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       220 ~~l~~mk~g~-ilvn~s-rg~~vd~~al~~al~~~~i  254 (286)
                        ...++.|. +++.-- .-.+-+.+.|.++.++.++
T Consensus        83 --~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~  117 (358)
T 3gdo_A           83 --MACIQAGKHVVMEKPMTATAEEGETLKRAADEKGV  117 (358)
T ss_dssp             --HHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTC
T ss_pred             --HHHHHcCCeEEEecCCcCCHHHHHHHHHHHHHcCC
Confidence              22233332 444321 2234455556665555433

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=96.86  E-value=0.0059  Score=55.22  Aligned_cols=153  Identities=14%  Similarity=0.158  Sum_probs=97.9

Q ss_pred             HHhccCCCccEEEEcCCCCCcCChhH-HhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCC
Q 043239           63 DTLSLLPALEIVVGSTAGIDHVDLQE-CRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYP  141 (286)
Q Consensus        63 ~~l~~~~~Lk~i~~~~~G~d~id~~~-~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~  141 (286)
                      .+++++.  -.|..+...  +=.+.. ++-.+|+|.|..+...-++  .+|+=++.+.++.         |         
T Consensus       108 rvLs~~~--D~iviR~~~--~~~~~~lA~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~---------g---------  163 (325)
T 1vlv_A          108 RVLGRMV--DAIMFRGYK--QETVEKLAEYSGVPVYNGLTDEFHPT--QALADLMTIEENF---------G---------  163 (325)
T ss_dssp             HHHHTTC--SEEEEESSC--HHHHHHHHHHHCSCEEESCCSSCCHH--HHHHHHHHHHHHH---------S---------
T ss_pred             HHHHHhC--CEEEEECCC--hHHHHHHHHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHh---------C---------
Confidence            4444543  445555432  222333 3344799999765433332  3444444433321         1         


Q ss_pred             CcccCCCCEEEEEcCC--hHHHHHHHHhccCCCEEEEECCCCCCCC--------------C--cccccCHHHhhcCCCEE
Q 043239          142 LGSTLGGKRVGIVGLG--SIGSEVAKRLVPFGCSIAYTSRKKKPGV--------------S--YPFYANVSGLAADSDVL  203 (286)
Q Consensus       142 ~~~~l~g~~vgIiG~G--~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------------~--~~~~~~l~e~l~~aDiV  203 (286)
                         .+.|.+|+++|=|  ++..+++..+..+|++|.+..+..-...              +  +....+++|+++++|+|
T Consensus       164 ---~l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvv  240 (325)
T 1vlv_A          164 ---RLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVV  240 (325)
T ss_dssp             ---CSTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEE
T ss_pred             ---CcCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEE
Confidence               3789999999985  9999999999999999998887543222              1  22367899999999999


Q ss_pred             EEeccC-------Chh-----hhhcccHHHHhcC-CCCcEEEEcC---CCcccCH
Q 043239          204 IVCCAL-------TEE-----THHMINKDVMTAL-GKEGVIINVG---RGALIDE  242 (286)
Q Consensus       204 ~~~lp~-------~~~-----t~~~i~~~~l~~m-k~g~ilvn~s---rg~~vd~  242 (286)
                      .+-.=.       .++     ....++++.++.+ |++++|.-+.   ||.=|+.
T Consensus       241 yt~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~LP~~Rg~EI~~  295 (325)
T 1vlv_A          241 YTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTY  295 (325)
T ss_dssp             EECCCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCH
T ss_pred             EeccccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCCCCCCCcccCH
Confidence            873210       011     2356789999999 9999999996   4544443

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=96.86  E-value=0.0025  Score=57.96  Aligned_cols=102  Identities=15%  Similarity=0.202  Sum_probs=63.1

Q ss_pred             CEEEEEcCChHHH-HHHHHhccC-CCEEE-EECCCCCCC-------CCcccccCHHHhhcC--CCEEEEeccCChhhhhc
Q 043239          149 KRVGIVGLGSIGS-EVAKRLVPF-GCSIA-YTSRKKKPG-------VSYPFYANVSGLAAD--SDVLIVCCALTEETHHM  216 (286)
Q Consensus       149 ~~vgIiG~G~iG~-~~A~~l~~~-g~~V~-~~~r~~~~~-------~~~~~~~~l~e~l~~--aDiV~~~lp~~~~t~~~  216 (286)
                      .+|||||+|.||+ ..+..++.. +++|+ +++++....       .+...+.++++++++  .|+|++++|....... 
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~-   81 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTHYDL-   81 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGHHHH-
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHHHHH-
Confidence            4899999999999 577777665 67875 778772111       133456899999976  8999999985433221 


Q ss_pred             ccHHHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHhCCee
Q 043239          217 INKDVMTALGKE-GVIINVG-RGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       217 i~~~~l~~mk~g-~ilvn~s-rg~~vd~~al~~al~~~~i~  255 (286)
                       ....   ++.| .+++.-- .-++-+.+.|.++.++.++.
T Consensus        82 -~~~a---l~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~  118 (349)
T 3i23_A           82 -AKQA---ILAGKSVIVEKPFCDTLEHAEELFALGQEKGVV  118 (349)
T ss_dssp             -HHHH---HHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             -HHHH---HHcCCEEEEECCCcCCHHHHHHHHHHHHHcCCe
Confidence             1222   3344 3444322 22344555666666665543

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.85  E-value=0.0013  Score=59.66  Aligned_cols=92  Identities=22%  Similarity=0.318  Sum_probs=59.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC--------------CcccccCHHHhhcCCCEEEEeccC
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV--------------SYPFYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~--------------~~~~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      -.+++|+|+|.|.||.++|..|...|.  ++..+|+..++..              ......+..+.+++||+|+++...
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~   86 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA   86 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC
Confidence            356799999999999999999987776  8999998654221              111123445789999999998643


Q ss_pred             Chh---hh-hcc--c----HH---HHhcCCCCcEEEEcCCC
Q 043239          210 TEE---TH-HMI--N----KD---VMTALGKEGVIINVGRG  237 (286)
Q Consensus       210 ~~~---t~-~~i--~----~~---~l~~mk~g~ilvn~srg  237 (286)
                      ...   ++ .++  |    ++   .+....|.+++++++..
T Consensus        87 ~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNP  127 (326)
T 3vku_A           87 PQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANP  127 (326)
T ss_dssp             C----------------CHHHHHHHHHTTTCCSEEEECSSS
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCc
Confidence            211   11 111  1    11   23334678999999643

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=96.85  E-value=0.00082  Score=60.74  Aligned_cols=115  Identities=15%  Similarity=0.219  Sum_probs=69.5

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC--------------CcccccCHHHhhcCCCEEEEeccCCh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV--------------SYPFYANVSGLAADSDVLIVCCALTE  211 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~--------------~~~~~~~l~e~l~~aDiV~~~lp~~~  211 (286)
                      .++|+|||.|.+|.+++..|...+.  ++..+|...++..              ......+..+.+++||+|+++.+...
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~   84 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQ   84 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCC
Confidence            3699999999999999999987665  8999998654321              01111244677999999999976432


Q ss_pred             hh-----------hhcccH--HHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCeeEE--Eeecc
Q 043239          212 ET-----------HHMINK--DVMTALGKEGVIINVGRGALIDEKELVHF--LVRGSLVEL--VLMCL  262 (286)
Q Consensus       212 ~t-----------~~~i~~--~~l~~mk~g~ilvn~srg~~vd~~al~~a--l~~~~i~ga--~lDv~  262 (286)
                      ..           ..++..  +.+....|.+++++++..-=+....+.+.  +...++-|.  .||..
T Consensus        85 ~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~gt~LD~~  152 (318)
T 1ez4_A           85 KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYATWKFSGFPKERVIGSGTSLDSS  152 (318)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHHcCCCHHHEEeccccchHH
Confidence            11           011110  12223378999999854433333444443  334466555  25643

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=96.83  E-value=0.0049  Score=55.27  Aligned_cols=124  Identities=15%  Similarity=0.195  Sum_probs=84.5

Q ss_pred             HhhcCeEEEecC-CCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCC---hHHHHHH
Q 043239           89 CRRRGILVTNAG-NAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLG---SIGSEVA  164 (286)
Q Consensus        89 ~~~~gI~v~n~~-~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G---~iG~~~A  164 (286)
                      ++..+|+|.|.. +...-++  .+|+=++.+.++.                    | .+.|.+|+++|=|   ++..+++
T Consensus       110 a~~~~vPVINagdg~~~HPt--QaLaDl~Ti~e~~--------------------g-~l~glkva~vGD~~~~rva~Sl~  166 (304)
T 3r7f_A          110 VSQVNIPILNAGDGCGQHPT--QSLLDLMTIYEEF--------------------N-TFKGLTVSIHGDIKHSRVARSNA  166 (304)
T ss_dssp             HHHCSSCEEESCCTTSCCHH--HHHHHHHHHHHHH--------------------S-CCTTCEEEEESCCTTCHHHHHHH
T ss_pred             HHhCCCCEEeCCCCCCcCcH--HHHHHHHHHHHHh--------------------C-CCCCCEEEEEcCCCCcchHHHHH
Confidence            344689999986 3333333  2333333333221                    1 3789999999975   6999999


Q ss_pred             HHhccCCCEEEEECCCCCCCC--CcccccCHHHhhcCCCEEEEeccCC----------h-hhhhcccHHHHhcCCCCcEE
Q 043239          165 KRLVPFGCSIAYTSRKKKPGV--SYPFYANVSGLAADSDVLIVCCALT----------E-ETHHMINKDVMTALGKEGVI  231 (286)
Q Consensus       165 ~~l~~~g~~V~~~~r~~~~~~--~~~~~~~l~e~l~~aDiV~~~lp~~----------~-~t~~~i~~~~l~~mk~g~il  231 (286)
                      ..+..+|++|.+..+..-...  ......+++|+++++|+|.+-.--.          + .....++.+.++.+|++++|
T Consensus       167 ~~~~~~G~~v~~~~P~~~~~~~~~~g~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~  246 (304)
T 3r7f_A          167 EVLTRLGARVLFSGPSEWQDEENTFGTYVSMDEAVESSDVVMLLRIQNERHQSAVSQEGYLNKYGLTVERAERMKRHAII  246 (304)
T ss_dssp             HHHHHTTCEEEEESCGGGSCTTCSSCEECCHHHHHHHCSEEEECCCCTTTCCSSCCSTTHHHHHSBCHHHHTTSCTTCEE
T ss_pred             HHHHHcCCEEEEECCCccCcchhhcCccCCHHHHhCCCCEEEeccchhhccccchhHHHHhCCCccCHHHHhhcCCCCEE
Confidence            999999999998876432221  1224568999999999998742110          1 12355788999999999999


Q ss_pred             EEcC
Q 043239          232 INVG  235 (286)
Q Consensus       232 vn~s  235 (286)
                      .-+.
T Consensus       247 mHcl  250 (304)
T 3r7f_A          247 MHPA  250 (304)
T ss_dssp             ECCS
T ss_pred             ECCC
Confidence            9886

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=96.83  E-value=0.0016  Score=58.98  Aligned_cols=62  Identities=16%  Similarity=0.249  Sum_probs=48.7

Q ss_pred             CCCEEEEEcCChHHH-HHHHHhccC-CCEEE-EECCCCCCCCCcccccCHHHhhcC---CCEEEEeccC
Q 043239          147 GGKRVGIVGLGSIGS-EVAKRLVPF-GCSIA-YTSRKKKPGVSYPFYANVSGLAAD---SDVLIVCCAL  209 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~-~~A~~l~~~-g~~V~-~~~r~~~~~~~~~~~~~l~e~l~~---aDiV~~~lp~  209 (286)
                      +..+|||||+|.||+ ..++.++.. +++|+ +++++.+. .+...+.++++++++   .|+|++++|.
T Consensus        24 ~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~-~g~~~~~~~~~ll~~~~~vD~V~i~tp~   91 (330)
T 4ew6_A           24 SPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV-EGVNSYTTIEAMLDAEPSIDAVSLCMPP   91 (330)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC-TTSEEESSHHHHHHHCTTCCEEEECSCH
T ss_pred             CCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh-cCCCccCCHHHHHhCCCCCCEEEEeCCc
Confidence            346999999999999 788888875 67765 67777654 345567899999865   8999999984

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=96.82  E-value=0.021  Score=51.54  Aligned_cols=161  Identities=14%  Similarity=0.134  Sum_probs=101.0

Q ss_pred             CceEEEEeCC-CCC--------CHHHhccCCCccEEEEcCCCCCcCChhH-HhhcCeEEEecCCCCCcChHHHHHHHHHH
Q 043239           48 SVRAILCLGP-SPL--------TSDTLSLLPALEIVVGSTAGIDHVDLQE-CRRRGILVTNAGNAFSEDGADYVVGLLVD  117 (286)
Q Consensus        48 ~~d~i~~~~~-~~~--------~~~~l~~~~~Lk~i~~~~~G~d~id~~~-~~~~gI~v~n~~~~~~~~vAE~~l~~~L~  117 (286)
                      +.+++..... ..+        +..+++++.  -.|..+..+  +=.+.. ++..+|+|.|..+...-++  .+|+=++.
T Consensus        72 Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~--D~iviR~~~--~~~~~~lA~~~~vPVINa~~~~~HPt--QaLaDl~T  145 (321)
T 1oth_A           72 GGHPCFLTTQDIHLGVNESLTDTARVLSSMA--DAVLARVYK--QSDLDTLAKEASIPIINGLSDLYHPI--QILADYLT  145 (321)
T ss_dssp             TCEEEEEETTTSCBTTTBCHHHHHHHHHHHC--SEEEEECSC--HHHHHHHHHHCSSCEEESCCSSCCHH--HHHHHHHH
T ss_pred             CCeEEEECCCcCcCCCCCCHHHHHHHHHHhC--CEEEEeCCC--hhHHHHHHHhCCCCEEcCCCCCCCcH--HHHHHHHH
Confidence            6777765321 111        234444443  345444332  222233 3445799999766433333  34444444


Q ss_pred             HHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCC-hHHHHHHHHhccCCCEEEEECCCCCCCC-----------
Q 043239          118 VLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLG-SIGSEVAKRLVPFGCSIAYTSRKKKPGV-----------  185 (286)
Q Consensus       118 ~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G-~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----------  185 (286)
                      +.++.         |            .+.|.+|+++|=| ++..+++..+..+|++|.+..+..-...           
T Consensus       146 i~e~~---------g------------~l~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a  204 (321)
T 1oth_A          146 LQEHY---------S------------SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYA  204 (321)
T ss_dssp             HHHHH---------S------------CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHH
T ss_pred             HHHHh---------C------------CcCCcEEEEECCchhhHHHHHHHHHHcCCeEEEECCccccCCHHHHHHHHHHH
Confidence            33321         1            3789999999974 5889999999999999998887554321           


Q ss_pred             ---C--cccccCHHHhhcCCCEEEEec----cCChh--------hhhcccHHHHhcCCCCcEEEEcC
Q 043239          186 ---S--YPFYANVSGLAADSDVLIVCC----ALTEE--------THHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       186 ---~--~~~~~~l~e~l~~aDiV~~~l----p~~~~--------t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                         +  +....+++|+++++|+|.+-+    ....+        ....++.+.++.+|++++|.-+.
T Consensus       205 ~~~G~~~~~~~d~~eav~~aDvvy~d~w~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~l  271 (321)
T 1oth_A          205 KENGTKLLLTNDPLEAAHGGNVLITDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  271 (321)
T ss_dssp             HHHTCCEEEESCHHHHHTTCSEEEECCSSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             HHcCCeEEEEECHHHHhccCCEEEEeccccccchhhhHHHHHhccCceECHHHHhhcCCCCEEECCC
Confidence               1  233678999999999998832    21111        11457899999999999999996

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.81  E-value=0.0032  Score=52.79  Aligned_cols=62  Identities=16%  Similarity=0.230  Sum_probs=48.2

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCCC-----------cccccCHHHhhcCCCEEEEeccCC
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS-----------YPFYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~-----------~~~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      ++|.|.| .|.+|+.+++.|...|++|.+.+|+..+...           .....++.++++++|+|+.+....
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~   78 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNPG   78 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC-
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcCC
Confidence            6899999 6999999999999999999999998664321           111235667889999998886543

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=96.80  E-value=0.0014  Score=62.58  Aligned_cols=102  Identities=17%  Similarity=0.222  Sum_probs=66.6

Q ss_pred             CCCEEEEEcC----ChHHHHHHHHhccC--CCEEE-EECCCCCCCC------Cc---ccccCHHHhhc--CCCEEEEecc
Q 043239          147 GGKRVGIVGL----GSIGSEVAKRLVPF--GCSIA-YTSRKKKPGV------SY---PFYANVSGLAA--DSDVLIVCCA  208 (286)
Q Consensus       147 ~g~~vgIiG~----G~iG~~~A~~l~~~--g~~V~-~~~r~~~~~~------~~---~~~~~l~e~l~--~aDiV~~~lp  208 (286)
                      .-.+|||||+    |.||...++.|+..  +++|+ ++|++.+...      +.   ..+.+++++++  +.|+|++|+|
T Consensus        38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp  117 (479)
T 2nvw_A           38 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK  117 (479)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred             CcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCC
Confidence            3468999999    99999999999876  67764 7888765321      22   25789999996  6899999998


Q ss_pred             CChhhhhcccHHHHhcCCCC-------cEEEEc-CCCcccCHHHHHHHHHhCC
Q 043239          209 LTEETHHMINKDVMTALGKE-------GVIINV-GRGALIDEKELVHFLVRGS  253 (286)
Q Consensus       209 ~~~~t~~~i~~~~l~~mk~g-------~ilvn~-srg~~vd~~al~~al~~~~  253 (286)
                      ......  +   ....++.|       .+++.- ..-.+-+.++|.++.++.+
T Consensus       118 ~~~H~~--~---~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g  165 (479)
T 2nvw_A          118 VPEHYE--V---VKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRA  165 (479)
T ss_dssp             HHHHHH--H---HHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCT
T ss_pred             cHHHHH--H---HHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcC
Confidence            443222  1   12223334       466664 1223445566666666554

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=96.80  E-value=0.0032  Score=57.09  Aligned_cols=106  Identities=19%  Similarity=0.257  Sum_probs=68.6

Q ss_pred             CEEEEEcCChHHHHHHHHhccC---------CCEEE-EECCCCCCCCC-------------ccccc--CHHHhhc--CCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF---------GCSIA-YTSRKKKPGVS-------------YPFYA--NVSGLAA--DSD  201 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~---------g~~V~-~~~r~~~~~~~-------------~~~~~--~l~e~l~--~aD  201 (286)
                      .+|||+|+|.||+.+++.+...         +.+|. +++++......             ...+.  +++++++  +.|
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iD   82 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYD   82 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCS
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCC
Confidence            4899999999999999998764         66765 56665432111             11233  8889885  489


Q ss_pred             EEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHhCCee
Q 043239          202 VLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALI-DEKELVHFLVRGSLV  255 (286)
Q Consensus       202 iV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~v-d~~al~~al~~~~i~  255 (286)
                      +|+.|+|....... ..+.....|+.|.-+|-..-+.+. ..+.|.+..++.+..
T Consensus        83 vVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~  136 (327)
T 3do5_A           83 VLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVR  136 (327)
T ss_dssp             EEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCC
T ss_pred             EEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCc
Confidence            99999985432111 122345567788877766555443 566777777776654

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=96.80  E-value=0.008  Score=54.28  Aligned_cols=131  Identities=20%  Similarity=0.230  Sum_probs=87.8

Q ss_pred             HhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcC-ChHHHHHHHHh
Q 043239           89 CRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGL-GSIGSEVAKRL  167 (286)
Q Consensus        89 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~-G~iG~~~A~~l  167 (286)
                      ++..+|+|.|..+...-++  .+|+=++.+.++.         |            .+.|.+|+++|= +++..+++..+
T Consensus       121 A~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~~---------g------------~l~glkva~vGD~~rva~Sl~~~~  177 (323)
T 3gd5_A          121 AHYAGIPVINALTDHEHPC--QVVADLLTIRENF---------G------------RLAGLKLAYVGDGNNVAHSLLLGC  177 (323)
T ss_dssp             HHHHCSCEEEEECSSCCHH--HHHHHHHHHHHHH---------S------------CCTTCEEEEESCCCHHHHHHHHHH
T ss_pred             HHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHh---------C------------CCCCCEEEEECCCCcHHHHHHHHH
Confidence            3455899999766333332  3333333333321         1            378999999994 78999999999


Q ss_pred             ccCCCEEEEECCCCCCCC--------------C--cccccCHHHhhcCCCEEEEeccCC--hh----------hhhcccH
Q 043239          168 VPFGCSIAYTSRKKKPGV--------------S--YPFYANVSGLAADSDVLIVCCALT--EE----------THHMINK  219 (286)
Q Consensus       168 ~~~g~~V~~~~r~~~~~~--------------~--~~~~~~l~e~l~~aDiV~~~lp~~--~~----------t~~~i~~  219 (286)
                      ..+|++|.+..+..-...              +  +....+++|+++++|+|.+-.=-.  .+          ....++.
T Consensus       178 ~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~eav~~aDvvyt~~wqs~g~~~~~~~~~~~~~~y~vt~  257 (323)
T 3gd5_A          178 AKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVWTSMGQEAETQHRLQLFEQYQINA  257 (323)
T ss_dssp             HHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCCC---------CCHHHHTTCCBCH
T ss_pred             HHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHHHHhcCCCEEEEeceecCCCcccchHHHHHhhccCCCH
Confidence            999999998887543322              1  224578999999999997642111  00          1245789


Q ss_pred             HHHhcCCCCcEEEEcC---CCcccCH
Q 043239          220 DVMTALGKEGVIINVG---RGALIDE  242 (286)
Q Consensus       220 ~~l~~mk~g~ilvn~s---rg~~vd~  242 (286)
                      +.++.+|++++|.-+.   ||.=|+.
T Consensus       258 ell~~ak~dai~mHclPa~Rg~EI~~  283 (323)
T 3gd5_A          258 ALLNCAAAEAIVLHCLPAHRGEEITD  283 (323)
T ss_dssp             HHHHTSCTTCEEEECSCCCBTTTBCH
T ss_pred             HHHhhcCCCcEEECCCCCCCCceeCH
Confidence            9999999999999985   6644443

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=96.78  E-value=0.0046  Score=56.63  Aligned_cols=91  Identities=14%  Similarity=0.235  Sum_probs=58.7

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCC-----C-EEEEEC-CC-CCCCC-----Ccc-----cc--cCHHHhhcCCCEEEEec
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFG-----C-SIAYTS-RK-KKPGV-----SYP-----FY--ANVSGLAADSDVLIVCC  207 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g-----~-~V~~~~-r~-~~~~~-----~~~-----~~--~~l~e~l~~aDiV~~~l  207 (286)
                      ++|+|+| .|.+|+.+.+.|...+     . ++.... ++ ..+..     ...     ..  .+. +.+.++|+|+.|+
T Consensus        10 ~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~-~~~~~~DvVf~al   88 (352)
T 2nqt_A           10 TKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEA-AVLGGHDAVFLAL   88 (352)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCH-HHHTTCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCH-HHhcCCCEEEECC
Confidence            6899999 9999999999998876     3 666553 22 21110     000     11  132 3466899999999


Q ss_pred             cCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 043239          208 ALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELV  246 (286)
Q Consensus       208 p~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~  246 (286)
                      |...      .++..+.++.|..+||.|..--.+..+.+
T Consensus        89 g~~~------s~~~~~~~~~G~~vIDlSa~~R~~~~~~~  121 (352)
T 2nqt_A           89 PHGH------SAVLAQQLSPETLIIDCGADFRLTDAAVW  121 (352)
T ss_dssp             TTSC------CHHHHHHSCTTSEEEECSSTTTCSCHHHH
T ss_pred             CCcc------hHHHHHHHhCCCEEEEECCCccCCcchhh
Confidence            8542      34444444678999999866555444443

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.76  E-value=0.0036  Score=59.15  Aligned_cols=98  Identities=20%  Similarity=0.340  Sum_probs=70.1

Q ss_pred             cccCCCCEEEEEcCC----------hHHHHHHHHhccCCCEEEEECCCCCCC-----CCcccccCHHHhhcCCCEEEEec
Q 043239          143 GSTLGGKRVGIVGLG----------SIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGLAADSDVLIVCC  207 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G----------~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~~~~~~~~l~e~l~~aDiV~~~l  207 (286)
                      +..+.|++|+|+|+.          .-...+++.|...|.+|.+||+.....     .+.....++++.++++|.|++++
T Consensus       317 ~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t  396 (446)
T 4a7p_A          317 GGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVT  396 (446)
T ss_dssp             TSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECS
T ss_pred             cccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEee
Confidence            345789999999997          678999999999999999999876321     13334568899999999999987


Q ss_pred             cCChhhhhcccH-HHHhcCCCCcEEEEcCCCcccCHHHH
Q 043239          208 ALTEETHHMINK-DVMTALGKEGVIINVGRGALIDEKEL  245 (286)
Q Consensus       208 p~~~~t~~~i~~-~~l~~mk~g~ilvn~srg~~vd~~al  245 (286)
                      .- ++-+. ++- ...+.|+. .+++|. |+ +.+.+.+
T Consensus       397 ~~-~~f~~-~d~~~~~~~~~~-~~i~D~-r~-~~~~~~~  430 (446)
T 4a7p_A          397 EW-DAFRA-LDLTRIKNSLKS-PVLVDL-RN-IYPPAEL  430 (446)
T ss_dssp             CC-TTTTS-CCHHHHHTTBSS-CBEECS-SC-CSCHHHH
T ss_pred             CC-HHhhc-CCHHHHHHhcCC-CEEEEC-CC-CCCHHHH
Confidence            53 33333 333 34555654 678986 54 3565444

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=96.75  E-value=0.00055  Score=62.20  Aligned_cols=90  Identities=11%  Similarity=0.078  Sum_probs=59.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCCC----------------cccccCHHHhhcCCCEEEEecc
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGVS----------------YPFYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~~----------------~~~~~~l~e~l~~aDiV~~~lp  208 (286)
                      ..++|+|+|.|.||..+|..+...|+  +|..+|...+...+                .....+.++ +++||+|+++..
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG   98 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG   98 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence            56899999999999999999988776  89999986542210                011235554 899999999854


Q ss_pred             CChh---hh-hcc--c----HH---HHhcCCCCcEEEEcCCC
Q 043239          209 LTEE---TH-HMI--N----KD---VMTALGKEGVIINVGRG  237 (286)
Q Consensus       209 ~~~~---t~-~~i--~----~~---~l~~mk~g~ilvn~srg  237 (286)
                      ....   ++ .++  |    ++   .+....|++++++++..
T Consensus        99 ~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNP  140 (330)
T 3ldh_A           99 ARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPEL  140 (330)
T ss_dssp             CCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCc
Confidence            3210   11 111  1    11   22333789999999754

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=96.74  E-value=0.0066  Score=55.07  Aligned_cols=150  Identities=9%  Similarity=0.028  Sum_probs=96.4

Q ss_pred             HHHhccCCCccEEEEcCCCCCcCChhH-HhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCC
Q 043239           62 SDTLSLLPALEIVVGSTAGIDHVDLQE-CRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAY  140 (286)
Q Consensus        62 ~~~l~~~~~Lk~i~~~~~G~d~id~~~-~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~  140 (286)
                      ..++.++.  -.|..+...  +=.+.. ++-.+|+|.|..+...-++  .+|+=++.+.+++                  
T Consensus        93 arvLs~~~--D~IviR~~~--~~~~~~lA~~~~vPVINa~~~~~HPt--Q~LaDl~Ti~e~~------------------  148 (333)
T 1duv_G           93 ARVLGRMY--DGIQYRGYG--QEIVETLAEYASVPVWNGLTNEFHPT--QLLADLLTMQEHL------------------  148 (333)
T ss_dssp             HHHHTTTC--SEEEEECSC--HHHHHHHHHHHSSCEEESCCSSCCHH--HHHHHHHHHHHHS------------------
T ss_pred             HHHHHHhC--CEEEEEcCC--chHHHHHHHhCCCCeEcCCCCCCCch--HHHHHHHHHHHHh------------------
Confidence            34444543  455555432  222333 3344799999765333333  3444444433331                  


Q ss_pred             CCcccCCCCEEEEEcCC--hHHHHHHHHhccCCCEEEEECCCCCCCC--------------C--cccccCHHHhhcCCCE
Q 043239          141 PLGSTLGGKRVGIVGLG--SIGSEVAKRLVPFGCSIAYTSRKKKPGV--------------S--YPFYANVSGLAADSDV  202 (286)
Q Consensus       141 ~~~~~l~g~~vgIiG~G--~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------------~--~~~~~~l~e~l~~aDi  202 (286)
                       .|..+.|.+|+++|=|  +++.+++..+..+|++|.+..+..-...              +  +....+++|+++++|+
T Consensus       149 -~g~~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDv  227 (333)
T 1duv_G          149 -PGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADF  227 (333)
T ss_dssp             -TTCCGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSE
T ss_pred             -cCCCCCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCE
Confidence             1224789999999986  9999999999999999998887543221              1  2236789999999999


Q ss_pred             EEEecc----CC---hh------hhhcccHHHHhcC-CCCcEEEEcCC
Q 043239          203 LIVCCA----LT---EE------THHMINKDVMTAL-GKEGVIINVGR  236 (286)
Q Consensus       203 V~~~lp----~~---~~------t~~~i~~~~l~~m-k~g~ilvn~sr  236 (286)
                      |.+-.=    ..   ..      ....++.+.++.+ |++++|.-+.-
T Consensus       228 vytd~w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP  275 (333)
T 1duv_G          228 IYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLP  275 (333)
T ss_dssp             EEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECSC
T ss_pred             EEeCCccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECCCC
Confidence            987322    00   11      2356789999999 99999999853

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=96.74  E-value=0.0067  Score=55.65  Aligned_cols=84  Identities=17%  Similarity=0.326  Sum_probs=54.8

Q ss_pred             CCEEEEEc-CChHHHHHHHHhccCCC-EEEEECCCCCCCCC-------cc-------cccCHHHhhcCCCEEEEeccCCh
Q 043239          148 GKRVGIVG-LGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVS-------YP-------FYANVSGLAADSDVLIVCCALTE  211 (286)
Q Consensus       148 g~~vgIiG-~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~~-------~~-------~~~~l~e~l~~aDiV~~~lp~~~  211 (286)
                      ..+|+|+| +|.+|+.+++.|..... ++............       +.       ...+ ++.++++|+|+.|+|...
T Consensus        16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~~~   94 (359)
T 1xyg_A           16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPHGT   94 (359)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCTTT
T ss_pred             CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCchh
Confidence            46899999 99999999999987653 77665443222110       00       1122 456678999999998543


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCCCc
Q 043239          212 ETHHMINKDVMTALGKEGVIINVGRGA  238 (286)
Q Consensus       212 ~t~~~i~~~~l~~mk~g~ilvn~srg~  238 (286)
                      .      .+.....+.|..+||.|..-
T Consensus        95 s------~~~a~~~~aG~~VId~sa~~  115 (359)
T 1xyg_A           95 T------QEIIKELPTALKIVDLSADF  115 (359)
T ss_dssp             H------HHHHHTSCTTCEEEECSSTT
T ss_pred             H------HHHHHHHhCCCEEEECCccc
Confidence            2      22222237789999997543

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=96.73  E-value=0.0016  Score=61.34  Aligned_cols=63  Identities=10%  Similarity=0.186  Sum_probs=48.4

Q ss_pred             CCEEEEEcCChHHHHHHHHhccC-CCEEE-EECCCCCCCC---------C---ccccc----CHHHhhc--CCCEEEEec
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPF-GCSIA-YTSRKKKPGV---------S---YPFYA----NVSGLAA--DSDVLIVCC  207 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~-g~~V~-~~~r~~~~~~---------~---~~~~~----~l~e~l~--~aDiV~~~l  207 (286)
                      ..+|||||+|.||+..++.+... +++|+ ++|++.++..         +   ...+.    +++++++  +.|+|++++
T Consensus        20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~t   99 (444)
T 2ixa_A           20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSS   99 (444)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECC
T ss_pred             CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcC
Confidence            35899999999999999988875 67764 7788765321         1   23456    8999997  589999999


Q ss_pred             cCC
Q 043239          208 ALT  210 (286)
Q Consensus       208 p~~  210 (286)
                      |..
T Consensus       100 p~~  102 (444)
T 2ixa_A          100 PWE  102 (444)
T ss_dssp             CGG
T ss_pred             CcH
Confidence            854

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=96.70  E-value=0.0025  Score=57.17  Aligned_cols=62  Identities=18%  Similarity=0.305  Sum_probs=48.9

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccCCCEEE-EECCCCCCCC------CcccccCHHHhh----------cCCCEEEEeccCC
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPFGCSIA-YTSRKKKPGV------SYPFYANVSGLA----------ADSDVLIVCCALT  210 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~g~~V~-~~~r~~~~~~------~~~~~~~l~e~l----------~~aDiV~~~lp~~  210 (286)
                      .++||||+ |.||+..++.++..+.+++ ++|++.+...      ....+.++++++          .+.|+|++|+|..
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~   83 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNH   83 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGG
T ss_pred             eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCch
Confidence            58999999 7899999999998888764 7788776521      233467888887          5799999999854

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=96.70  E-value=0.0018  Score=59.20  Aligned_cols=64  Identities=19%  Similarity=0.173  Sum_probs=46.4

Q ss_pred             CCEEEEEcCChHHHHHHHHhccC--------CCEEE-EECCCCCCCC------Cc-ccccCHHHhhcC--CCEEEEeccC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPF--------GCSIA-YTSRKKKPGV------SY-PFYANVSGLAAD--SDVLIVCCAL  209 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~--------g~~V~-~~~r~~~~~~------~~-~~~~~l~e~l~~--aDiV~~~lp~  209 (286)
                      --+|||||+|.||+.-++.++..        +++|+ ++|++.+...      +. ..+.++++++++  .|+|++|+|.
T Consensus        25 kirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP~  104 (393)
T 4fb5_A           25 PLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTPN  104 (393)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSCG
T ss_pred             CccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCCh
Confidence            34899999999999888776643        46765 6788876643      22 356899999964  7999999995


Q ss_pred             Ch
Q 043239          210 TE  211 (286)
Q Consensus       210 ~~  211 (286)
                      .-
T Consensus       105 ~~  106 (393)
T 4fb5_A          105 QF  106 (393)
T ss_dssp             GG
T ss_pred             HH
Confidence            43

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=96.69  E-value=0.0043  Score=55.72  Aligned_cols=147  Identities=16%  Similarity=0.147  Sum_probs=94.2

Q ss_pred             HHHhccCCCccEEEEcCCCCCcCChhHH-hhcCeEEEecCC-CCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCC
Q 043239           62 SDTLSLLPALEIVVGSTAGIDHVDLQEC-RRRGILVTNAGN-AFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGA  139 (286)
Q Consensus        62 ~~~l~~~~~Lk~i~~~~~G~d~id~~~~-~~~gI~v~n~~~-~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~  139 (286)
                      ..+++++.  -.|..+...  +=.+..+ +-.+|+|.|... ...-++  .+|+=++.+.++                  
T Consensus        94 arvls~~~--D~iviR~~~--~~~~~~la~~~~vPVINag~g~~~HPt--Q~LaDl~Ti~e~------------------  149 (308)
T 1ml4_A           94 IKTVEQYC--DVIVIRHPK--EGAARLAAEVAEVPVINAGDGSNQHPT--QTLLDLYTIKKE------------------  149 (308)
T ss_dssp             HHHHTTTC--SEEEEEESS--TTHHHHHHHTCSSCEEEEEETTSCCHH--HHHHHHHHHHHH------------------
T ss_pred             HHHHHHhC--cEEEEecCC--hhHHHHHHHhCCCCEEeCccCCccCcH--HHHHHHHHHHHH------------------
Confidence            45556553  444444332  2233333 445799999753 333333  233333333322                  


Q ss_pred             CCCcccCCCCEEEEEcC---ChHHHHHHHHhccCCCEEEEECCCCCCCC----------C--cccccCHHHhhcCCCEEE
Q 043239          140 YPLGSTLGGKRVGIVGL---GSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------S--YPFYANVSGLAADSDVLI  204 (286)
Q Consensus       140 ~~~~~~l~g~~vgIiG~---G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------~--~~~~~~l~e~l~~aDiV~  204 (286)
                        .| .+.|.+|+++|=   |++..+++..+..+|++|.+..+..-...          +  +....+++|+++++|+|.
T Consensus       150 --~g-~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy  226 (308)
T 1ml4_A          150 --FG-RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLY  226 (308)
T ss_dssp             --SS-CSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEE
T ss_pred             --hC-CCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEE
Confidence              11 378999999997   58999999999999999998887543222          1  123478999999999998


Q ss_pred             EeccCC------hhh-----hhcccHHHHhcCCCCcEEEEcC
Q 043239          205 VCCALT------EET-----HHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       205 ~~lp~~------~~t-----~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      +-.=-.      ++-     ...++.+.++.+|++++|.-+.
T Consensus       227 t~~~q~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l  268 (308)
T 1ml4_A          227 VTRIQKERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL  268 (308)
T ss_dssp             ECCCCGGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred             ECCccccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCC
Confidence            743211      111     2456888889999999999885

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=96.69  E-value=0.0016  Score=60.15  Aligned_cols=62  Identities=18%  Similarity=0.282  Sum_probs=48.8

Q ss_pred             CEEEEEcCC-hHHHHHHHHhccC-CCEEE-EECCCCCCCC------CcccccCHHHhhcC--CCEEEEeccCC
Q 043239          149 KRVGIVGLG-SIGSEVAKRLVPF-GCSIA-YTSRKKKPGV------SYPFYANVSGLAAD--SDVLIVCCALT  210 (286)
Q Consensus       149 ~~vgIiG~G-~iG~~~A~~l~~~-g~~V~-~~~r~~~~~~------~~~~~~~l~e~l~~--aDiV~~~lp~~  210 (286)
                      .+|||||+| .||..++..+... +++++ +++++.++..      ++..+.++++++++  .|+|++++|..
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~   75 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQ   75 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGG
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcH
Confidence            589999999 9999999998875 56765 6788765421      34457899999975  99999999854

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.69  E-value=0.0078  Score=53.54  Aligned_cols=108  Identities=14%  Similarity=0.101  Sum_probs=76.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCC--CCCcccccCHHHhhcCCCEEEEeccCCh----------hh
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP--GVSYPFYANVSGLAADSDVLIVCCALTE----------ET  213 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~--~~~~~~~~~l~e~l~~aDiV~~~lp~~~----------~t  213 (286)
                      ++|++|.++|........++.|...|++|.+...+...  ..+.....++.+.++++|+|+...|...          .+
T Consensus         5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~~   84 (300)
T 2rir_A            5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSNE   84 (300)
T ss_dssp             CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSCSS
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCcccccccccC
Confidence            67889999999999999999999999999877533222  1233334556778899999987444221          12


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEE
Q 043239          214 HHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELV  258 (286)
Q Consensus       214 ~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~  258 (286)
                      ...++++.++.++++.+++ ++    +|..++.+++.+.+|....
T Consensus        85 ~~~~~~~~l~~~~~l~~i~-~g----~~~~d~~~~~~~~gi~v~~  124 (300)
T 2rir_A           85 EVVLKQDHLDRTPAHCVIF-SG----ISNAYLENIAAQAKRKLVK  124 (300)
T ss_dssp             CEECCHHHHHTSCTTCEEE-ES----SCCHHHHHHHHHTTCCEEE
T ss_pred             CccchHHHHhhcCCCCEEE-Ee----cCCHHHHHHHHHCCCEEEe
Confidence            2236788999999988877 32    3777877888888776443

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.69  E-value=0.002  Score=56.23  Aligned_cols=62  Identities=23%  Similarity=0.381  Sum_probs=47.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-Cc-------ccccCHHHhhcC-CCEEEEecc
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-SY-------PFYANVSGLAAD-SDVLIVCCA  208 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-~~-------~~~~~l~e~l~~-aDiV~~~lp  208 (286)
                      .+++|.|.|.|.+|+.+++.|.+.|++|++.+|+..... +.       ....++.++++. +|+|+.+..
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~   72 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVA   72 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence            357899999999999999999999999999998865432 11       112345566766 999987753

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=96.68  E-value=0.0066  Score=55.38  Aligned_cols=83  Identities=13%  Similarity=0.185  Sum_probs=53.6

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCCC-EEEEECCCCCCCC----------C--cccccCHHHhhcCCCEEEEeccCChhhh
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV----------S--YPFYANVSGLAADSDVLIVCCALTEETH  214 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~----------~--~~~~~~l~e~l~~aDiV~~~lp~~~~t~  214 (286)
                      ++|+|+| .|.+|+.+.+.|..... ++....+......          +  .....++++ +.++|+|+.|+|.... .
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~~~s-~   82 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPHGVF-A   82 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCTTHH-H
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCcHHH-H
Confidence            5899999 79999999999987654 7665544322211          0  011234444 5789999999986533 2


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCC
Q 043239          215 HMINKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~srg  237 (286)
                      ... ..   .++.|..+|+.|..
T Consensus        83 ~~a-~~---~~~aG~~VId~Sa~  101 (345)
T 2ozp_A           83 REF-DR---YSALAPVLVDLSAD  101 (345)
T ss_dssp             HTH-HH---HHTTCSEEEECSST
T ss_pred             HHH-HH---HHHCCCEEEEcCcc
Confidence            222 22   24678899999754

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.68  E-value=0.0032  Score=55.65  Aligned_cols=61  Identities=16%  Similarity=0.329  Sum_probs=46.4

Q ss_pred             CCEEEEEc-CChHHHHHHHHhcc-CCCEEEE-ECCCCCCCC------------CcccccCHHHhhcCCCEEEEecc
Q 043239          148 GKRVGIVG-LGSIGSEVAKRLVP-FGCSIAY-TSRKKKPGV------------SYPFYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       148 g~~vgIiG-~G~iG~~~A~~l~~-~g~~V~~-~~r~~~~~~------------~~~~~~~l~e~l~~aDiV~~~lp  208 (286)
                      ..+|+|+| +|.||+.+++.+.. -++++.+ ++++.....            +.....++++++.++|+|+-+.+
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~   82 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTL   82 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSC
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCC
Confidence            36899999 99999999998875 4678764 687643211            23346799999999999988764

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=96.68  E-value=0.0019  Score=54.97  Aligned_cols=62  Identities=11%  Similarity=0.142  Sum_probs=45.6

Q ss_pred             CCEEEEEcCChHHHHHHHH--hccCCCEEE-EECCCCCCCC----C--cccccCHHHhhc-CCCEEEEeccCC
Q 043239          148 GKRVGIVGLGSIGSEVAKR--LVPFGCSIA-YTSRKKKPGV----S--YPFYANVSGLAA-DSDVLIVCCALT  210 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~--l~~~g~~V~-~~~r~~~~~~----~--~~~~~~l~e~l~-~aDiV~~~lp~~  210 (286)
                      .++++|+|+|.+|+.+++.  ... |++++ ++|.++++..    +  .....+++++++ +.|+|++|+|..
T Consensus        80 ~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps~  151 (211)
T 2dt5_A           80 KWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPRE  151 (211)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCHH
T ss_pred             CCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCch
Confidence            3589999999999999996  334 78765 5676665432    2  123567888886 589999999854

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=96.67  E-value=0.0027  Score=57.11  Aligned_cols=62  Identities=15%  Similarity=0.288  Sum_probs=48.6

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccCCCEEE-EECCCCCCCC------CcccccCHHHhh-----------cCCCEEEEeccC
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPFGCSIA-YTSRKKKPGV------SYPFYANVSGLA-----------ADSDVLIVCCAL  209 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~g~~V~-~~~r~~~~~~------~~~~~~~l~e~l-----------~~aDiV~~~lp~  209 (286)
                      .++||||+ |.||...++.++..+.+++ ++|++.+...      ....+.++++++           .+.|+|++++|.
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~   83 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPN   83 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCG
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCc
Confidence            58999999 7899999999998888764 6788765421      233467888887           568999999985


Q ss_pred             C
Q 043239          210 T  210 (286)
Q Consensus       210 ~  210 (286)
                      .
T Consensus        84 ~   84 (318)
T 3oa2_A           84 Y   84 (318)
T ss_dssp             G
T ss_pred             H
Confidence            4

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=96.67  E-value=0.003  Score=56.36  Aligned_cols=103  Identities=16%  Similarity=0.262  Sum_probs=68.6

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccCCCE-EEEECCCCC--CCCCcccccCHHHhhc--CCCEEEEeccCChhhhhcccHHHH
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPFGCS-IAYTSRKKK--PGVSYPFYANVSGLAA--DSDVLIVCCALTEETHHMINKDVM  222 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~g~~-V~~~~r~~~--~~~~~~~~~~l~e~l~--~aDiV~~~lp~~~~t~~~i~~~~l  222 (286)
                      .+++|+|. |.+|+.+++.+...|++ |...++...  ...+...+.+++++..  ..|++++++|. +.....+. +..
T Consensus        14 ~~v~V~Gasg~~G~~~~~~l~~~g~~~V~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~ii~vp~-~~~~~~v~-ea~   91 (294)
T 2yv1_A           14 TKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAVKETDANASVIFVPA-PFAKDAVF-EAI   91 (294)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCH-HHHHHHHH-HHH
T ss_pred             CEEEEECCCCCHHHHHHHHHHhCCCeEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCEEEEccCH-HHHHHHHH-HHH
Confidence            45788898 99999999999988987 345565431  1235556789999988  89999999983 33343332 233


Q ss_pred             hcCCCCcEEEEcCCC-cccCHHHHHHHHHhCCee
Q 043239          223 TALGKEGVIINVGRG-ALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       223 ~~mk~g~ilvn~srg-~~vd~~al~~al~~~~i~  255 (286)
                      + .... .+|..+.| +.-+.+.+.++.++..++
T Consensus        92 ~-~Gi~-~vVi~t~G~~~~~~~~l~~~A~~~gi~  123 (294)
T 2yv1_A           92 D-AGIE-LIVVITEHIPVHDTMEFVNYAEDVGVK  123 (294)
T ss_dssp             H-TTCS-EEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             H-CCCC-EEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            2 2222 24445544 334567888888887765

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.66  E-value=0.00098  Score=58.12  Aligned_cols=79  Identities=22%  Similarity=0.316  Sum_probs=55.8

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCC------CC------------------------Cc--cc-
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKP------GV------------------------SY--PF-  189 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~------~~------------------------~~--~~-  189 (286)
                      ..|.+++|.|+|+|.+|..+++.|...|. ++.++|+..-.      ..                        ..  .. 
T Consensus        24 ~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~  103 (251)
T 1zud_1           24 QKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTAL  103 (251)
T ss_dssp             HHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence            45889999999999999999999999998 78888754311      00                        00  00 


Q ss_pred             -----ccCHHHhhcCCCEEEEeccCChhhhhcccHHHHh
Q 043239          190 -----YANVSGLAADSDVLIVCCALTEETHHMINKDVMT  223 (286)
Q Consensus       190 -----~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~  223 (286)
                           ..++.++++++|+|+.++. +.+++..+++....
T Consensus       104 ~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~  141 (251)
T 1zud_1          104 QQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVA  141 (251)
T ss_dssp             CSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHH
T ss_pred             eccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHH
Confidence                 0134567788999988875 56677777665544

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=96.66  E-value=0.0012  Score=59.87  Aligned_cols=116  Identities=18%  Similarity=0.227  Sum_probs=69.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC--------------CcccccCHHHhhcCCCEEEEeccCC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV--------------SYPFYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~--------------~~~~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      ..++|+|||.|.+|.+++..+...+.  ++..+|...++..              ......+..+.+++||+|+++.+..
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~   87 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAP   87 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence            44799999999999999999887665  8999998653321              0111124467799999999997643


Q ss_pred             hhh-----------hhcccH--HHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCeeEE--Eeecc
Q 043239          211 EET-----------HHMINK--DVMTALGKEGVIINVGRGALIDEKELVHF--LVRGSLVEL--VLMCL  262 (286)
Q Consensus       211 ~~t-----------~~~i~~--~~l~~mk~g~ilvn~srg~~vd~~al~~a--l~~~~i~ga--~lDv~  262 (286)
                      ...           ..++..  +.+....|.+++++++..-=+....+.+.  +...++.|.  .||..
T Consensus        88 ~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~gt~LD~~  156 (326)
T 2zqz_A           88 QKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTA  156 (326)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHHcCCCHHHEEEccccchHH
Confidence            221           011100  11222368899999854433333334343  333466555  25643

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.65  E-value=0.0029  Score=51.96  Aligned_cols=63  Identities=22%  Similarity=0.224  Sum_probs=48.2

Q ss_pred             CCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc-------cccCHHHhhcCCCEEEEeccCC
Q 043239          148 GKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP-------FYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       148 g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~-------~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      +++|.|.|. |.+|+.+++.|...|++|.+.+|+.....     ...       ...++.++++.+|+|+.+....
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~   78 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR   78 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCC
Confidence            479999997 99999999999999999999988765322     111       1234567788999998887643

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=96.64  E-value=0.013  Score=52.55  Aligned_cols=132  Identities=19%  Similarity=0.190  Sum_probs=89.2

Q ss_pred             HhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCC-CCEEEEEc-CChHHHHHHHH
Q 043239           89 CRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLG-GKRVGIVG-LGSIGSEVAKR  166 (286)
Q Consensus        89 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~-g~~vgIiG-~G~iG~~~A~~  166 (286)
                      ++..+|+|.|..+...-++  .+|+=++.+.++                    .| .+. |.+|+++| .+++..+++..
T Consensus       109 A~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~--------------------~g-~l~~gl~va~vGD~~~va~Sl~~~  165 (307)
T 3tpf_A          109 ARYSKAPVINALSELYHPT--QVLGDLFTIKEW--------------------NK-MQNGIAKVAFIGDSNNMCNSWLIT  165 (307)
T ss_dssp             HHHCSSCEEEEECSSCCHH--HHHHHHHHHHHT--------------------TC-CGGGCCEEEEESCSSHHHHHHHHH
T ss_pred             HHhCCCCEEeCCCCCcCcH--HHHHHHHHHHHH--------------------hC-CCCCCCEEEEEcCCCccHHHHHHH
Confidence            3456799999766433332  333333333332                    11 377 99999999 46889999999


Q ss_pred             hccCCCEEEEECCCCCCCC----------------CcccccCHHHhhcCCCEEEEec--cCCh--h--------hhhccc
Q 043239          167 LVPFGCSIAYTSRKKKPGV----------------SYPFYANVSGLAADSDVLIVCC--ALTE--E--------THHMIN  218 (286)
Q Consensus       167 l~~~g~~V~~~~r~~~~~~----------------~~~~~~~l~e~l~~aDiV~~~l--p~~~--~--------t~~~i~  218 (286)
                      +..+|++|.+..+..-...                .+....+++|+++++|+|.+-.  +-.+  +        ....++
T Consensus       166 ~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvyt~~w~smg~e~~~~~~~~~~~~y~v~  245 (307)
T 3tpf_A          166 AAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITDTWVSMGEENEKERKIKEFEGFMID  245 (307)
T ss_dssp             HHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEECCSSCTTGGGGHHHHHHHTGGGCBC
T ss_pred             HHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecCcccCCchhhHHHHHHHhcccccC
Confidence            9999999998887543222                1123479999999999997754  0111  1        135578


Q ss_pred             HHHHhcCCCCcEEEEcC---CCcccCHH
Q 043239          219 KDVMTALGKEGVIINVG---RGALIDEK  243 (286)
Q Consensus       219 ~~~l~~mk~g~ilvn~s---rg~~vd~~  243 (286)
                      .+.++.+|++++|.-+.   ||.=|+.+
T Consensus       246 ~e~l~~a~~~ai~mH~lPa~Rg~EI~~e  273 (307)
T 3tpf_A          246 EKAMSVANKDAILLHCLPAYRGYEVSEE  273 (307)
T ss_dssp             HHHHHHSCTTCEEEECSCCCBTTTBCHH
T ss_pred             HHHHHhcCCCcEEECCCCCCCCceeCHH
Confidence            99999999999999986   66555543

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=96.62  E-value=0.01  Score=55.90  Aligned_cols=106  Identities=15%  Similarity=0.271  Sum_probs=71.4

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCC---CCCcc---------------------------cccC
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP---GVSYP---------------------------FYAN  192 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~---~~~~~---------------------------~~~~  192 (286)
                      +.++.|++|.|=|+|++|..+|+.|...|.+|++.+-+.-.   ..+..                           ...+
T Consensus       230 ~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~~  309 (450)
T 4fcc_A          230 GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYLE  309 (450)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEEE
T ss_pred             CCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEec
Confidence            34689999999999999999999999999998765422100   00000                           0001


Q ss_pred             HHHhh-cCCCEEEEeccCChhhhhcccHHHHhcCCCC--cEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          193 VSGLA-ADSDVLIVCCALTEETHHMINKDVMTALGKE--GVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       193 l~e~l-~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g--~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      -++++ ..|||.+=|.     +.+.|+.+..+.++..  .++++-+.+.+..+ + .+.|.+++|.
T Consensus       310 ~~~i~~~~~DI~iPcA-----l~~~I~~~~a~~L~a~g~k~IaEgAN~p~t~e-A-~~iL~~rGIl  368 (450)
T 4fcc_A          310 GQQPWSVPVDIALPCA-----TQNELDVDAAHQLIANGVKAVAEGANMPTTIE-A-TELFQQAGVL  368 (450)
T ss_dssp             TCCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH-H-HHHHHHTTCE
T ss_pred             CcccccCCccEEeecc-----ccccccHHHHHHHHhcCceEEecCCCCCCCHH-H-HHHHHHCCCE
Confidence            11222 3699887764     5678998888888653  47888888886544 3 3677777775

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.61  E-value=0.0034  Score=57.70  Aligned_cols=61  Identities=20%  Similarity=0.290  Sum_probs=46.4

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCC----------cccccCHHHhhcCCCEEEE
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS----------YPFYANVSGLAADSDVLIV  205 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~----------~~~~~~l~e~l~~aDiV~~  205 (286)
                      .+.+++|+|+|.|.+|+.+++.++.+|++|+++++.+.....          ......+.++++++|+|+.
T Consensus         9 ~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~   79 (377)
T 3orq_A            9 LKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITY   79 (377)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCccee
Confidence            467999999999999999999999999999999876543210          0011235667888998754

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=96.61  E-value=0.0085  Score=55.53  Aligned_cols=97  Identities=12%  Similarity=0.083  Sum_probs=65.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHh---
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMT---  223 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~---  223 (286)
                      .-.++.|+|.|.+|+++++.++.+|++|+++|..++-...        +-+..+|-++...|.     ..+..  +.   
T Consensus       203 P~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~~~~--------~~fp~a~~~~~~~p~-----~~~~~--~~~~~  267 (386)
T 2we8_A          203 PRPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFATT--------ARFPTADEVVVDWPH-----RYLAA--QAEAG  267 (386)
T ss_dssp             CCCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTTSCT--------TTCSSSSEEEESCHH-----HHHHH--HHHHT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhccc--------ccCCCceEEEeCChH-----HHHHh--hcccc
Confidence            3458999999999999999999999999999876543211        123455545444331     11111  11   


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEE
Q 043239          224 ALGKEGVIINVGRGALIDEKELVHFLVRGSLVELV  258 (286)
Q Consensus       224 ~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~  258 (286)
                      .+.+++.+|=+.++.-.|...|..+|+.....+.+
T Consensus       268 ~~~~~t~vvvlTh~~~~D~~~L~~aL~~~~~~YIG  302 (386)
T 2we8_A          268 AIDARTVVCVLTHDPKFDVPLLEVALRLPDIAYIG  302 (386)
T ss_dssp             CCCTTCEEEECCCCHHHHHHHHHHHTTSSCCSEEE
T ss_pred             CCCCCcEEEEEECChHhHHHHHHHHhcCCCCCEEE
Confidence            15667777778888888888888888776444444

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.59  E-value=0.0019  Score=58.30  Aligned_cols=91  Identities=16%  Similarity=0.254  Sum_probs=59.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCC--CCCC---------------Ccc-cccCHHHhhcCCCEEEEec
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKK--KPGV---------------SYP-FYANVSGLAADSDVLIVCC  207 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~--~~~~---------------~~~-~~~~l~e~l~~aDiV~~~l  207 (286)
                      ..++|+|+|.|.||..+|..+...|+ +|..+|+++  ....               ... ...+-.+.+++||+|+++.
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIiaa   86 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVITA   86 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEeC
Confidence            46799999999999999999998898 999999983  2111               001 1112246789999999986


Q ss_pred             cCChh---hh-hcc------cHH---HHhcCCCCcEEEEcCCC
Q 043239          208 ALTEE---TH-HMI------NKD---VMTALGKEGVIINVGRG  237 (286)
Q Consensus       208 p~~~~---t~-~~i------~~~---~l~~mk~g~ilvn~srg  237 (286)
                      .....   ++ .++      -++   .+....|++++++++..
T Consensus        87 g~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNP  129 (315)
T 3tl2_A           87 GIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNP  129 (315)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCCh
Confidence            42211   11 111      111   12223688999999754

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.59  E-value=0.002  Score=54.68  Aligned_cols=68  Identities=19%  Similarity=0.208  Sum_probs=50.1

Q ss_pred             cccCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cc-c-----cccCHHHhhcCCCEEEEeccCC
Q 043239          143 GSTLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SY-P-----FYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       143 ~~~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~-~-----~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      ...+.||+|.|.|. |.||+.+++.|.+.|++|.+.+|+.++..     +. .     ...++.+.+..+|+|+.+....
T Consensus        16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~   95 (236)
T 3e8x_A           16 NLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSG   95 (236)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred             ccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence            35689999999997 99999999999999999999998865421     11 1     1156677889999998887643

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.59  E-value=0.0029  Score=52.65  Aligned_cols=89  Identities=15%  Similarity=0.261  Sum_probs=57.7

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC----Cccc-ccCH----HHhhcCCCEEEEeccCChhhhh---
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----SYPF-YANV----SGLAADSDVLIVCCALTEETHH---  215 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----~~~~-~~~l----~e~l~~aDiV~~~lp~~~~t~~---  215 (286)
                      |+|.|.| .|.||+.+++.|.+.|++|.+.+|+.++..    +... ..++    .+.+..+|+|+.+.........   
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~~   80 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAEKHV   80 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCSSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTTSHH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccCCCeEEeccccChhhhhhcCCCEEEECCcCCccccchHH
Confidence            5799999 599999999999999999999999764321    1110 0111    1678899999988765432211   


Q ss_pred             cccHHHHhcCCCC--cEEEEcCCC
Q 043239          216 MINKDVMTALGKE--GVIINVGRG  237 (286)
Q Consensus       216 ~i~~~~l~~mk~g--~ilvn~srg  237 (286)
                      ......++.|+..  ..+|.+|..
T Consensus        81 ~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           81 TSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             HHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             HHHHHHHHHHHhcCCceEEEEecc
Confidence            1123455555443  567777654

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=96.55  E-value=0.0048  Score=55.17  Aligned_cols=104  Identities=20%  Similarity=0.296  Sum_probs=68.1

Q ss_pred             CCEEEEEcC-ChHHHHHHHHhccCCCE-EEEECCCC--CCCCCcccccCHHHhhc--C-CCEEEEeccCChhhhhcccHH
Q 043239          148 GKRVGIVGL-GSIGSEVAKRLVPFGCS-IAYTSRKK--KPGVSYPFYANVSGLAA--D-SDVLIVCCALTEETHHMINKD  220 (286)
Q Consensus       148 g~~vgIiG~-G~iG~~~A~~l~~~g~~-V~~~~r~~--~~~~~~~~~~~l~e~l~--~-aDiV~~~lp~~~~t~~~i~~~  220 (286)
                      ..++.|+|. |.+|+.+++.+...|++ |..+++..  ....+...+.+++++..  . .|++++++|. +.+...+. +
T Consensus        13 ~~~vvV~Gasg~~G~~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~~DvaIi~vp~-~~~~~~v~-e   90 (297)
T 2yv2_A           13 ETRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGSEVHGVPVYDSVKEALAEHPEINTSIVFVPA-PFAPDAVY-E   90 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHCTTCCEEEECCCG-GGHHHHHH-H
T ss_pred             CCEEEEECCCCCHHHHHHHHHHhCCCcEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCCEEEEecCH-HHHHHHHH-H
Confidence            345777798 99999999999988997 34566543  12235556789999887  5 9999999984 33444432 2


Q ss_pred             HHhcCCCCcEEEEcCCC-cccCHHHHHHHHHhCCee
Q 043239          221 VMTALGKEGVIINVGRG-ALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       221 ~l~~mk~g~ilvn~srg-~~vd~~al~~al~~~~i~  255 (286)
                      ..+ .... .+|..+.| ..-+.+.+.++.++..++
T Consensus        91 a~~-~Gi~-~vVi~t~G~~~~~~~~l~~~A~~~gi~  124 (297)
T 2yv2_A           91 AVD-AGIR-LVVVITEGIPVHDTMRFVNYARQKGAT  124 (297)
T ss_dssp             HHH-TTCS-EEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             HHH-CCCC-EEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            322 2222 24445544 224567888888887765

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=96.55  E-value=0.015  Score=54.57  Aligned_cols=105  Identities=14%  Similarity=0.252  Sum_probs=71.5

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCCEEE-EECCCCCC--CC------------------Cc--ccccCHHHhh-c
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA-YTSRKKKP--GV------------------SY--PFYANVSGLA-A  198 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~-~~~r~~~~--~~------------------~~--~~~~~l~e~l-~  198 (286)
                      |.++.|++|+|.|+|++|+.+|+.|...|.+|+ +.|++..-  ..                  ++  ....+.++++ .
T Consensus       230 g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i~~~ei~~~  309 (440)
T 3aog_A          230 GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWGL  309 (440)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEECCHHHHTTC
T ss_pred             CCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEcCchhhhcC
Confidence            456899999999999999999999999999987 55553210  00                  00  0122445655 3


Q ss_pred             CCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          199 DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       199 ~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      .||+++-|..     .+.++.+....++ -.+++-.+.+.+. .+ -.+.|.+++|.
T Consensus       310 ~~DIlvPcA~-----~n~i~~~na~~l~-ak~VvEgAN~p~t-~e-A~~iL~~~GI~  358 (440)
T 3aog_A          310 PVEFLVPAAL-----EKQITEQNAWRIR-ARIVAEGANGPTT-PA-ADDILLEKGVL  358 (440)
T ss_dssp             CCSEEEECSS-----SSCBCTTTGGGCC-CSEEECCSSSCBC-HH-HHHHHHHHTCE
T ss_pred             CCcEEEecCC-----cCccchhhHHHcC-CcEEEecCccccC-HH-HHHHHHHCCCE
Confidence            6999988753     4567777777774 4677888888864 33 34566666664

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=96.54  E-value=0.016  Score=52.97  Aligned_cols=136  Identities=13%  Similarity=0.122  Sum_probs=85.1

Q ss_pred             HhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCC-CCCCCCcccCCCCEEEEEcCC-hHHHHHHHH
Q 043239           89 CRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPD-HGAYPLGSTLGGKRVGIVGLG-SIGSEVAKR  166 (286)
Q Consensus        89 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~-~~~~~~~~~l~g~~vgIiG~G-~iG~~~A~~  166 (286)
                      ++..+|+|.|..+...-++  .+|+=++.+.+++         |.... .........+.|.+|+++|=+ ++..+++..
T Consensus       139 A~~s~vPVINag~d~~HPt--QaLaDl~TI~E~~---------G~~~~~~~~~~~~~~l~glkva~vGD~~nva~Sl~~~  207 (353)
T 3sds_A          139 AKHSSVPVINALCDTFHPL--QAIADFLTIHESF---------ASQSATHGTHPSSLGLEGLKIAWVGDANNVLFDLAIA  207 (353)
T ss_dssp             HHHCSSCEEEEECSSCCHH--HHHHHHHHHHHHT---------C--------CTTCCSCTTCEEEEESCCCHHHHHHHHH
T ss_pred             HhhCCCCEEECCCCCCCcH--HHHHHHHHHHHHh---------CCCcccccccccccccCCCEEEEECCCchHHHHHHHH
Confidence            4556899999864332222  3343344433332         11100 000112345899999999954 688888889


Q ss_pred             hccCCCEEEEECCCCCCCC------------------CcccccCHHHhhcCCCEEEEec--cCChh----------hhhc
Q 043239          167 LVPFGCSIAYTSRKKKPGV------------------SYPFYANVSGLAADSDVLIVCC--ALTEE----------THHM  216 (286)
Q Consensus       167 l~~~g~~V~~~~r~~~~~~------------------~~~~~~~l~e~l~~aDiV~~~l--p~~~~----------t~~~  216 (286)
                      +..+|++|.+..+..-...                  .+....+++|+++++|+|++-.  +..++          ....
T Consensus       208 l~~lG~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~~~d~~eav~~aDVvytd~w~smg~E~~~~~r~~~~~~y~  287 (353)
T 3sds_A          208 ATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVIVTDTWISMGQETEKIKRLEAFKDFK  287 (353)
T ss_dssp             HHHTTCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEEESCHHHHTTTCSEEEECCC--------CHHHHHHTTTCC
T ss_pred             HHHcCCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEEECCHHHHhcCCCEEEeCCccCCchhhHHHHHHHHhhCce
Confidence            9999999998887543211                  1224579999999999998632  21111          1245


Q ss_pred             ccHHHHhc--CCCCcEEEEcC
Q 043239          217 INKDVMTA--LGKEGVIINVG  235 (286)
Q Consensus       217 i~~~~l~~--mk~g~ilvn~s  235 (286)
                      ++.+.++.  +|++++|.-+.
T Consensus       288 vt~ell~~~~ak~~ai~MHcL  308 (353)
T 3sds_A          288 VTSELAKRGGAKENWKFMHCL  308 (353)
T ss_dssp             BCHHHHHHHTCCTTCEEEECS
T ss_pred             ecHHHHhhcccCCCcEEECCC
Confidence            78999998  89999999986

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=96.52  E-value=0.0013  Score=61.89  Aligned_cols=63  Identities=21%  Similarity=0.329  Sum_probs=49.2

Q ss_pred             CCEEEEEcC----ChHHHHHHHHhccC--CCEE-EEECCCCCCCC------Cc---ccccCHHHhhc--CCCEEEEeccC
Q 043239          148 GKRVGIVGL----GSIGSEVAKRLVPF--GCSI-AYTSRKKKPGV------SY---PFYANVSGLAA--DSDVLIVCCAL  209 (286)
Q Consensus       148 g~~vgIiG~----G~iG~~~A~~l~~~--g~~V-~~~~r~~~~~~------~~---~~~~~l~e~l~--~aDiV~~~lp~  209 (286)
                      -.+|||||+    |.||...++.++..  +++| .+++++.++..      +.   ..+.+++++++  +.|+|++|+|.
T Consensus        20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~   99 (438)
T 3btv_A           20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQV   99 (438)
T ss_dssp             CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCH
T ss_pred             CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCc
Confidence            358999999    99999999999886  6776 47888765321      22   25689999996  58999999984


Q ss_pred             C
Q 043239          210 T  210 (286)
Q Consensus       210 ~  210 (286)
                      .
T Consensus       100 ~  100 (438)
T 3btv_A          100 A  100 (438)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=96.48  E-value=0.01  Score=53.30  Aligned_cols=153  Identities=14%  Similarity=0.164  Sum_probs=95.3

Q ss_pred             HHHhccCCCccEEEEcCCCCCcCChhHHh-hc-CeEEEecCC-CCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCC
Q 043239           62 SDTLSLLPALEIVVGSTAGIDHVDLQECR-RR-GILVTNAGN-AFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHG  138 (286)
Q Consensus        62 ~~~l~~~~~Lk~i~~~~~G~d~id~~~~~-~~-gI~v~n~~~-~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~  138 (286)
                      ..+++++.  -.|..+...  +=.+..+. -. +|+|.|... ...-++  .+|+=++.+.++.         |      
T Consensus        92 arvls~~~--D~iviR~~~--~~~~~~la~~~~~vPVINag~G~~~HPt--QaLaDl~Ti~e~~---------g------  150 (310)
T 3csu_A           92 ISVISTYV--DAIVMRHPQ--EGAARLATEFSGNVPVLNAGDGSNQHPT--QTLLDLFTIQETQ---------G------  150 (310)
T ss_dssp             HHHHTTTC--SEEEEEESS--TTHHHHHHHHCTTCCEEEEEETTSCCHH--HHHHHHHHHHHHH---------S------
T ss_pred             HHHHHHhC--CEEEEECCC--hhHHHHHHHhcCCCCEEcCccCCCCCch--HHHHHHHHHHHHh---------C------
Confidence            34555553  445444332  22334333 44 699999753 333333  2333333333321         1      


Q ss_pred             CCCCcccCCCCEEEEEcC---ChHHHHHHHHhccC-CCEEEEECCCCCCCC----------C--cccccCHHHhhcCCCE
Q 043239          139 AYPLGSTLGGKRVGIVGL---GSIGSEVAKRLVPF-GCSIAYTSRKKKPGV----------S--YPFYANVSGLAADSDV  202 (286)
Q Consensus       139 ~~~~~~~l~g~~vgIiG~---G~iG~~~A~~l~~~-g~~V~~~~r~~~~~~----------~--~~~~~~l~e~l~~aDi  202 (286)
                            .+.|.+|+++|=   |++..+++..+..+ |++|.+..+..-...          +  +....+++|+++++|+
T Consensus       151 ------~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDv  224 (310)
T 3csu_A          151 ------RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDI  224 (310)
T ss_dssp             ------CSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSE
T ss_pred             ------CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCE
Confidence                  378999999997   59999999999999 999998887543222          2  1234789999999999


Q ss_pred             EEEeccCCh----h------hhhcccHHHHhcCCCCcEEEEcC-CCcccC
Q 043239          203 LIVCCALTE----E------THHMINKDVMTALGKEGVIINVG-RGALID  241 (286)
Q Consensus       203 V~~~lp~~~----~------t~~~i~~~~l~~mk~g~ilvn~s-rg~~vd  241 (286)
                      |.+-.--.+    +      ....++.+.++.+|++++|.-+. ||.=|+
T Consensus       225 vyt~~~q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lPrg~EI~  274 (310)
T 3csu_A          225 LYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIA  274 (310)
T ss_dssp             EEECC-----------------CCBCGGGGTTCCTTCEEECCSCCSSSBC
T ss_pred             EEECCccccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCCCCCCeec
Confidence            977532111    1      13556888899999999999886 544333

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.44  E-value=0.0033  Score=55.57  Aligned_cols=38  Identities=24%  Similarity=0.400  Sum_probs=34.3

Q ss_pred             cCCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      ++.|+++.|+| .|.+|+.+++.|...|++|++.+|+.+
T Consensus       116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~  154 (287)
T 1lu9_A          116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD  154 (287)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHH
Confidence            36789999999 999999999999999999999998753

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.43  E-value=0.0041  Score=51.97  Aligned_cols=89  Identities=10%  Similarity=0.156  Sum_probs=57.7

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc-ccCH----HHhhcCCCEEEEeccCC-----hh
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF-YANV----SGLAADSDVLIVCCALT-----EE  212 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~-~~~l----~e~l~~aDiV~~~lp~~-----~~  212 (286)
                      |+|.|.|. |.||+.+++.|.+.|++|.+.+|+..+..     +... ..++    .+.+..+|+|+.+....     ..
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~   80 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSVPWGSGRGY   80 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTTSSCTH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCccCCCcchhh
Confidence            47899997 99999999999999999999998754321     1110 1111    16788999998887542     11


Q ss_pred             hhhcccHHHHhcCCC-CcEEEEcCCC
Q 043239          213 THHMINKDVMTALGK-EGVIINVGRG  237 (286)
Q Consensus       213 t~~~i~~~~l~~mk~-g~ilvn~srg  237 (286)
                      ..-......++.|+. |..||.+|..
T Consensus        81 ~n~~~~~~l~~a~~~~~~~~v~~SS~  106 (224)
T 3h2s_A           81 LHLDFATHLVSLLRNSDTLAVFILGS  106 (224)
T ss_dssp             HHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred             HHHHHHHHHHHHHHHcCCcEEEEecc
Confidence            111112445666643 4677877653

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=96.43  E-value=0.0019  Score=58.03  Aligned_cols=109  Identities=17%  Similarity=0.248  Sum_probs=65.2

Q ss_pred             CEEEEEcCChHHHHHHHHhccCC--CEEEEECCCCCCCC--------------CcccccCHHHhhcCCCEEEEeccCChh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFG--CSIAYTSRKKKPGV--------------SYPFYANVSGLAADSDVLIVCCALTEE  212 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g--~~V~~~~r~~~~~~--------------~~~~~~~l~e~l~~aDiV~~~lp~~~~  212 (286)
                      ++|+|||.|.+|.+++..|...+  -++..+|...++..              ......+-.+.+++||+|+++.+....
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~~   80 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQR   80 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence            58999999999999999998766  48999998753221              011111336779999999998764321


Q ss_pred             -----------hhhcccH--HHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCeeEE
Q 043239          213 -----------THHMINK--DVMTALGKEGVIINVGRGALIDEKELVHF--LVRGSLVEL  257 (286)
Q Consensus       213 -----------t~~~i~~--~~l~~mk~g~ilvn~srg~~vd~~al~~a--l~~~~i~ga  257 (286)
                                 +..++..  +.+....|.+++++++..-=+....+.+.  +...++-|.
T Consensus        81 ~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~  140 (310)
T 2xxj_A           81 PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVAYALSGLPPGRVVGS  140 (310)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCGGGEEEC
T ss_pred             CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHHHHHcCCCHHHEEec
Confidence                       0111100  11222368899999854433333333333  333355444

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=96.42  E-value=0.0044  Score=58.62  Aligned_cols=111  Identities=13%  Similarity=0.110  Sum_probs=72.5

Q ss_pred             CCEEEEEcCChH-HHHHHHHhcc----C-CCEEEEECCCC--CCCC---------------C--cccccCHHHhhcCCCE
Q 043239          148 GKRVGIVGLGSI-GSEVAKRLVP----F-GCSIAYTSRKK--KPGV---------------S--YPFYANVSGLAADSDV  202 (286)
Q Consensus       148 g~~vgIiG~G~i-G~~~A~~l~~----~-g~~V~~~~r~~--~~~~---------------~--~~~~~~l~e~l~~aDi  202 (286)
                      .++|+|||.|.. |.+++..|..    + +.+|..||+..  ++..               .  .....++.+.+++||+
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~   86 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF   86 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCE
Confidence            468999999999 8887666554    3 55899999987  4211               1  1123578889999999


Q ss_pred             EEEeccCChh---hh----------------------------hccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 043239          203 LIVCCALTEE---TH----------------------------HMIN--KDVMTALGKEGVIINVGRGALIDEKELVHFL  249 (286)
Q Consensus       203 V~~~lp~~~~---t~----------------------------~~i~--~~~l~~mk~g~ilvn~srg~~vd~~al~~al  249 (286)
                      |++++|....   ++                            .++.  .+.+....|+++++|++..--+-+.++.+..
T Consensus        87 VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a~~k~~  166 (450)
T 1s6y_A           87 VTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYT  166 (450)
T ss_dssp             EEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHC
T ss_pred             EEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhC
Confidence            9999985321   11                            0110  0122334689999999888766667776665


Q ss_pred             HhCCeeEEE
Q 043239          250 VRGSLVELV  258 (286)
Q Consensus       250 ~~~~i~ga~  258 (286)
                      ...++-|.+
T Consensus       167 p~~rViG~c  175 (450)
T 1s6y_A          167 KQEKVVGLC  175 (450)
T ss_dssp             CCCCEEECC
T ss_pred             CCCCEEEeC
Confidence            343565553

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=96.41  E-value=0.0093  Score=53.04  Aligned_cols=84  Identities=14%  Similarity=0.117  Sum_probs=54.9

Q ss_pred             CEEEEEc-CChHHHHHHHHhcc-CCCEEE-EECCCCCCC-------------CCcccccCHHHhhcCCCEEEEeccCChh
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVP-FGCSIA-YTSRKKKPG-------------VSYPFYANVSGLAADSDVLIVCCALTEE  212 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~-~g~~V~-~~~r~~~~~-------------~~~~~~~~l~e~l~~aDiV~~~lp~~~~  212 (286)
                      .+|+|+| +|+||+.+++.+.. -++++. +++++....             .++....++++++.++|+|+-+.+. ..
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~p-~a  100 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQP-QA  100 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSCH-HH
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCCH-HH
Confidence            5899999 99999999998764 477865 567764321             1233467999999999999876531 11


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCC
Q 043239          213 THHMINKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       213 t~~~i~~~~l~~mk~g~ilvn~srg  237 (286)
                      +..    .....++.|.-+|-...|
T Consensus       101 ~~~----~~~~~l~~Gv~vViGTTG  121 (288)
T 3ijp_A          101 SVL----YANYAAQKSLIHIIGTTG  121 (288)
T ss_dssp             HHH----HHHHHHHHTCEEEECCCC
T ss_pred             HHH----HHHHHHHcCCCEEEECCC
Confidence            221    122223456556655556

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=96.40  E-value=0.047  Score=50.96  Aligned_cols=105  Identities=17%  Similarity=0.271  Sum_probs=72.2

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhcc-CCCEEE-EECCCCC---C-----------------CCCc--ccccCHHHhh-
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVP-FGCSIA-YTSRKKK---P-----------------GVSY--PFYANVSGLA-  197 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~-~g~~V~-~~~r~~~---~-----------------~~~~--~~~~~l~e~l-  197 (286)
                      |.++.|++|.|.|+|++|+..|+.|.. .|.+|+ +.|.+..   +                 ..++  ....+.++++ 
T Consensus       204 g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~~~~eil~  283 (415)
T 2tmg_A          204 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLE  283 (415)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEECHHHHTT
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEcCchhhhc
Confidence            457899999999999999999999998 999987 5554311   0                 0000  0112445655 


Q ss_pred             cCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          198 ADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       198 ~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      ..||+++-|..     .+.++.+....++ -.+++-.+.+.+. .+ -.+.|.++++.
T Consensus       284 ~~~DIliP~A~-----~n~i~~~~a~~l~-ak~V~EgAN~p~t-~~-a~~~l~~~Gi~  333 (415)
T 2tmg_A          284 LDVDILVPAAL-----EGAIHAGNAERIK-AKAVVEGANGPTT-PE-ADEILSRRGIL  333 (415)
T ss_dssp             CSCSEEEECSS-----TTSBCHHHHTTCC-CSEEECCSSSCBC-HH-HHHHHHHTTCE
T ss_pred             CCCcEEEecCC-----cCccCcccHHHcC-CeEEEeCCCcccC-HH-HHHHHHHCCCE
Confidence            47999988753     4567888888884 4577777888864 33 34567777665

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.39  E-value=0.0016  Score=59.61  Aligned_cols=85  Identities=25%  Similarity=0.323  Sum_probs=61.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC------CCccc---ccC---HHHhhcCCCEEEEeccCChhhh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG------VSYPF---YAN---VSGLAADSDVLIVCCALTEETH  214 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~------~~~~~---~~~---l~e~l~~aDiV~~~lp~~~~t~  214 (286)
                      .|++|.|+|.|.+|..+++.++.+|++|++.+++.++.      .+...   ..+   +.++....|+|+.++.....  
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~--  264 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHP--  264 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHH--
Confidence            68899999999999999999999999999988776532      12211   112   33344568999998764321  


Q ss_pred             hcccHHHHhcCCCCcEEEEcCC
Q 043239          215 HMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                         -...++.|+++..+|+++.
T Consensus       265 ---~~~~~~~l~~~G~iv~~g~  283 (366)
T 1yqd_A          265 ---LLPLFGLLKSHGKLILVGA  283 (366)
T ss_dssp             ---SHHHHHHEEEEEEEEECCC
T ss_pred             ---HHHHHHHHhcCCEEEEEcc
Confidence               2456777888888888864

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=96.38  E-value=0.013  Score=53.15  Aligned_cols=138  Identities=14%  Similarity=0.210  Sum_probs=90.0

Q ss_pred             HhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCC--hHHHHHHHH
Q 043239           89 CRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLG--SIGSEVAKR  166 (286)
Q Consensus        89 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G--~iG~~~A~~  166 (286)
                      ++..+|+|.|......-++  .+|+=++.+.++...      .+        ...+.+.|.+|+++|=|  ++..+++..
T Consensus       118 A~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~~g~------~~--------~~~~~l~gl~va~vGD~~~~va~Sl~~~  181 (328)
T 3grf_A          118 AQHASVPCINALDDFGHPL--QMVCDFMTIKEKFTA------AG--------EFSNGFKGIKFAYCGDSMNNVTYDLMRG  181 (328)
T ss_dssp             HHHCSSCEEESSCSSCCHH--HHHHHHHHHHHHHHH------TT--------CCTTTGGGCCEEEESCCSSHHHHHHHHH
T ss_pred             HHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHhCC------cc--------ccccccCCcEEEEeCCCCcchHHHHHHH
Confidence            4456899999866433332  334444443333110      00        01235889999999975  899999999


Q ss_pred             hccCCCEEEEECCCCCC--CC----------------C--cccccCHHHhhcCCCEEEEe----ccCCh---------hh
Q 043239          167 LVPFGCSIAYTSRKKKP--GV----------------S--YPFYANVSGLAADSDVLIVC----CALTE---------ET  213 (286)
Q Consensus       167 l~~~g~~V~~~~r~~~~--~~----------------~--~~~~~~l~e~l~~aDiV~~~----lp~~~---------~t  213 (286)
                      +..+|++|.+..+..-.  ..                +  +....+++|+++++|+|.+-    +...+         -.
T Consensus       182 ~~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvytd~W~sm~iq~er~~~~~~~~~  261 (328)
T 3grf_A          182 CALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVDVVYTDSWMSYHITKEQKEARLKVLT  261 (328)
T ss_dssp             HHHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCSEEEECCCC--------CCTHHHHHG
T ss_pred             HHHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEcCHHHHhcCCCEEEecCccccCCcHHHHHHHHHHhc
Confidence            99999999988775432  11                1  22457999999999999863    22011         02


Q ss_pred             hhcccHHHHhcCCCCcEEEEcC---CCcccCH
Q 043239          214 HHMINKDVMTALGKEGVIINVG---RGALIDE  242 (286)
Q Consensus       214 ~~~i~~~~l~~mk~g~ilvn~s---rg~~vd~  242 (286)
                      ...++.+.++.+|++++|.-+.   ||.=|+.
T Consensus       262 ~y~vt~~~l~~a~~~ai~mH~lPa~Rg~EI~~  293 (328)
T 3grf_A          262 PFQVDDAVMAVTSKRSIFMNCLPATRGEEQTA  293 (328)
T ss_dssp             GGCBCHHHHTTSCTTCEEEECSCCCTTTTBCH
T ss_pred             CCCCCHHHHHhcCCCCEEECCCCCCCCCccCH
Confidence            3457899999999999999986   6654443

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=96.36  E-value=0.0019  Score=58.48  Aligned_cols=62  Identities=19%  Similarity=0.310  Sum_probs=46.4

Q ss_pred             CEEEEEcCChHHHH-HHHHhccC-CCEEE-EECCCCCCCC------Cc-ccccCHHHhhcC--CCEEEEeccCC
Q 043239          149 KRVGIVGLGSIGSE-VAKRLVPF-GCSIA-YTSRKKKPGV------SY-PFYANVSGLAAD--SDVLIVCCALT  210 (286)
Q Consensus       149 ~~vgIiG~G~iG~~-~A~~l~~~-g~~V~-~~~r~~~~~~------~~-~~~~~l~e~l~~--aDiV~~~lp~~  210 (286)
                      .++||||+|.||+. .+..++.. +++|+ ++|++.++..      +. ..+.|+++++++  .|+|++|+|..
T Consensus        24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~   97 (350)
T 4had_A           24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTS   97 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGG
T ss_pred             cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCc
Confidence            48999999999986 46666654 67875 6788765432      22 347899999854  79999999854

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.36  E-value=0.0063  Score=54.29  Aligned_cols=66  Identities=15%  Similarity=0.116  Sum_probs=49.2

Q ss_pred             ccCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC-------Ccc-------cccCHHHhhc--CCCEEEEe
Q 043239          144 STLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------SYP-------FYANVSGLAA--DSDVLIVC  206 (286)
Q Consensus       144 ~~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------~~~-------~~~~l~e~l~--~aDiV~~~  206 (286)
                      ..+.|++|.|.|. |.||+.+++.|...|++|++.+|+.....       ...       ...++.++++  .+|+|+.+
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~   95 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHS   95 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEEC
Confidence            4688999999996 99999999999999999999988543211       111       1123556777  89999887


Q ss_pred             ccC
Q 043239          207 CAL  209 (286)
Q Consensus       207 lp~  209 (286)
                      ...
T Consensus        96 A~~   98 (330)
T 2pzm_A           96 AAA   98 (330)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            653

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=96.35  E-value=0.0053  Score=56.16  Aligned_cols=83  Identities=12%  Similarity=0.193  Sum_probs=51.9

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCC-CEEEEECC--CCCCCC-----Cc----------c--cc--cCHHHhhc-CCCEEE
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFG-CSIAYTSR--KKKPGV-----SY----------P--FY--ANVSGLAA-DSDVLI  204 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g-~~V~~~~r--~~~~~~-----~~----------~--~~--~~l~e~l~-~aDiV~  204 (286)
                      ++|+|+| +|.+|+.+++.|.... ++|.+..+  +.....     +.          .  .+  .+++++++ ++|+|+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~   88 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVF   88 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCEEE
Confidence            5899999 9999999999998764 57765532  211110     00          0  01  14455556 899999


Q ss_pred             EeccCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 043239          205 VCCALTEETHHMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       205 ~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                      .|+|... +.... ...   ++.|..+||.+.
T Consensus        89 ~atp~~~-~~~~a-~~~---~~aG~~VId~s~  115 (354)
T 1ys4_A           89 SALPSDL-AKKFE-PEF---AKEGKLIFSNAS  115 (354)
T ss_dssp             ECCCHHH-HHHHH-HHH---HHTTCEEEECCS
T ss_pred             ECCCchH-HHHHH-HHH---HHCCCEEEECCc
Confidence            9998432 22221 222   356888999874

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=96.34  E-value=0.012  Score=54.00  Aligned_cols=124  Identities=13%  Similarity=0.152  Sum_probs=84.5

Q ss_pred             HhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCC--hHHHHHHHH
Q 043239           89 CRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLG--SIGSEVAKR  166 (286)
Q Consensus        89 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G--~iG~~~A~~  166 (286)
                      ++-.+|+|.|..+...-++  .+|+=++.+..+                    .| .+.|.+|+++|=+  ++..+++..
T Consensus       144 A~~s~vPVINa~~~~~HPt--QaLaDl~Ti~E~--------------------~G-~l~glkva~vGD~~nnva~Sl~~~  200 (365)
T 4amu_A          144 VKYSGVPVWNGLTDDEHPT--QIIADFMTMKEK--------------------FG-NLKNKKIVFIGDYKNNVGVSTMIG  200 (365)
T ss_dssp             HHHHCSCEEEEECSSCCHH--HHHHHHHHHHHH--------------------HS-SCTTCEEEEESSTTSHHHHHHHHH
T ss_pred             HHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHH--------------------hC-CCCCCEEEEECCCCcchHHHHHHH
Confidence            4455899999765333332  333333333222                    11 2789999999987  889999999


Q ss_pred             hccCCCEEEEECCCCCCC--C--------------C--cccccCHHHhhcCCCEEEEe----ccCChh---------hhh
Q 043239          167 LVPFGCSIAYTSRKKKPG--V--------------S--YPFYANVSGLAADSDVLIVC----CALTEE---------THH  215 (286)
Q Consensus       167 l~~~g~~V~~~~r~~~~~--~--------------~--~~~~~~l~e~l~~aDiV~~~----lp~~~~---------t~~  215 (286)
                      +..+|++|.+..+..-..  .              +  +....+++|+++++|+|.+-    +....+         ...
T Consensus       201 ~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDVVytd~W~smg~~~~~~~er~~~~~~y  280 (365)
T 4amu_A          201 AAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKILAAQDADVIYTDVWVSLGEPFELFDKRIGELKNF  280 (365)
T ss_dssp             HHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEESCHHHHTTTCSEEEECCSCCTTCCHHHHHHHHHHHTTC
T ss_pred             HHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEEEECCHHHHhcCCCEEEecccccCCchhhhHHHHHHHhccc
Confidence            999999999888743222  1              1  22357999999999999873    121111         124


Q ss_pred             cccHHHHhcCCCCcEEEEcC
Q 043239          216 MINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       216 ~i~~~~l~~mk~g~ilvn~s  235 (286)
                      -++.+.++.+|++++|.-+.
T Consensus       281 ~vt~ell~~a~~dai~MHcL  300 (365)
T 4amu_A          281 QVDMNMIKAAKNDVIFLHCL  300 (365)
T ss_dssp             CBCHHHHHHSCTTCEEEECS
T ss_pred             ccCHHHHHhcCCCcEEECCC
Confidence            57899999999999999886

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=96.34  E-value=0.0022  Score=57.61  Aligned_cols=90  Identities=17%  Similarity=0.270  Sum_probs=58.3

Q ss_pred             EEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC---------------C--cccccCHHHhhcCCCEEEEeccCCh
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV---------------S--YPFYANVSGLAADSDVLIVCCALTE  211 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~---------------~--~~~~~~l~e~l~~aDiV~~~lp~~~  211 (286)
                      +|+|||.|.||..++..+...|+ +|..+|+..++..               .  .....+. +.+++||+|+++.+...
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~   79 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGR   79 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCC
Confidence            58999999999999999876676 6999998765322               1  1111454 67899999999965432


Q ss_pred             h-----------hhhcccHHH---HhcCCCCcEEEEcCCCcccCHH
Q 043239          212 E-----------THHMINKDV---MTALGKEGVIINVGRGALIDEK  243 (286)
Q Consensus       212 ~-----------t~~~i~~~~---l~~mk~g~ilvn~srg~~vd~~  243 (286)
                      .           +..++ ++.   +....|++++|+++.  ++|.-
T Consensus        80 k~G~~r~dl~~~n~~i~-~~i~~~i~~~~p~a~iiv~tN--Pv~~~  122 (308)
T 2d4a_B           80 KPGMTREQLLEANANTM-ADLAEKIKAYAKDAIVVITTN--PVDAM  122 (308)
T ss_dssp             CSSCCTHHHHHHHHHHH-HHHHHHHHHHCTTCEEEECCS--SHHHH
T ss_pred             CCCCcHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEeCC--chHHH
Confidence            1           11111 122   222258899999855  44433

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.31  E-value=0.0067  Score=51.34  Aligned_cols=65  Identities=22%  Similarity=0.287  Sum_probs=50.3

Q ss_pred             CCCCEEEEEc-CChHHHHHHHHhccCCC--EEEEECCCCCCCCC------------cccccCHHHhhcCCCEEEEeccCC
Q 043239          146 LGGKRVGIVG-LGSIGSEVAKRLVPFGC--SIAYTSRKKKPGVS------------YPFYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       146 l~g~~vgIiG-~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~~------------~~~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      +.++++.|.| .|.||+.+++.|...|+  +|++.+|+......            .....+++++++..|+|+.+....
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~   95 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   95 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence            4578999999 69999999999999999  99999987754321            111245667788999999887654

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=96.31  E-value=0.018  Score=54.25  Aligned_cols=121  Identities=15%  Similarity=0.228  Sum_probs=91.8

Q ss_pred             CeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCC
Q 043239           93 GILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGC  172 (286)
Q Consensus        93 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~  172 (286)
                      .|++.|.--   .-+|=-+++.+++.+|-                    .++++...+|.|.|.|..|..+|+.+...|.
T Consensus       187 ~ipvFnDD~---qGTA~V~lAgllnAlki--------------------~gk~l~d~riV~~GAGaAGigia~ll~~~G~  243 (487)
T 3nv9_A          187 DIPVWHDDQ---QGTASVTLAGLLNALKL--------------------VKKDIHECRMVFIGAGSSNTTCLRLIVTAGA  243 (487)
T ss_dssp             SSCEEETTT---HHHHHHHHHHHHHHHHH--------------------HTCCGGGCCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cCCcccccc---chHHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECCCHHHHHHHHHHHHcCC
Confidence            799998652   35677788888887775                    3456889999999999999999999999998


Q ss_pred             ---EEEEECCCC----CCCC-----------------CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCC
Q 043239          173 ---SIAYTSRKK----KPGV-----------------SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKE  228 (286)
Q Consensus       173 ---~V~~~~r~~----~~~~-----------------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g  228 (286)
                         +|+.+|+..    ....                 ......+|.|+++.+|+++-+ ...  ..+.+.++++..|.+.
T Consensus       244 ~~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n~~~~~~L~eav~~adVlIG~-S~~--~pg~ft~e~V~~Ma~~  320 (487)
T 3nv9_A          244 DPKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLISL-STP--GPGVVKAEWIKSMGEK  320 (487)
T ss_dssp             CGGGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSCTTCCCSHHHHHTTCSEEEEC-CCS--SCCCCCHHHHHTSCSS
T ss_pred             CcccEEEEeccccccCCcchhhhhcccHHHHHHHHhcccccCCCHHHHHhcCCEEEEe-ccc--CCCCCCHHHHHhhcCC
Confidence               798888752    1100                 000235799999999977654 211  1478999999999999


Q ss_pred             cEEEEcCCCcc
Q 043239          229 GVIINVGRGAL  239 (286)
Q Consensus       229 ~ilvn~srg~~  239 (286)
                      ++|.-+|+...
T Consensus       321 PIIFaLSNPtp  331 (487)
T 3nv9_A          321 PIVFCCANPVP  331 (487)
T ss_dssp             CEEEECCSSSC
T ss_pred             CEEEECCCCCc
Confidence            99999987654

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.31  E-value=0.0077  Score=54.08  Aligned_cols=35  Identities=29%  Similarity=0.175  Sum_probs=30.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCC
Q 043239          147 GGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      ..++|.|.|. |.+|+.+++.|...|++|.+.+|+.
T Consensus         9 ~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A            9 PKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             --CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            3578999997 9999999999999999999999876

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.30  E-value=0.0047  Score=55.28  Aligned_cols=67  Identities=15%  Similarity=0.085  Sum_probs=46.7

Q ss_pred             cccCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC------CcccccCHHHhhcCCCEEEEeccC
Q 043239          143 GSTLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       143 ~~~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      ..+..+++|.|.|. |.||+.+++.|...|++|++.+|+.....      ......++.++++.+|+|+.+...
T Consensus        14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~   87 (347)
T 4id9_A           14 LVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAF   87 (347)
T ss_dssp             -------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCcc
Confidence            45688999999997 99999999999999999999998765411      111234566788999999877543

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=96.29  E-value=0.0061  Score=56.86  Aligned_cols=102  Identities=18%  Similarity=0.156  Sum_probs=63.0

Q ss_pred             CCEEEEEcCCh---HHHHHHHHhccCC-CEEE--EECCCCCCCC------Cc---ccccCHHHhhcC-------CCEEEE
Q 043239          148 GKRVGIVGLGS---IGSEVAKRLVPFG-CSIA--YTSRKKKPGV------SY---PFYANVSGLAAD-------SDVLIV  205 (286)
Q Consensus       148 g~~vgIiG~G~---iG~~~A~~l~~~g-~~V~--~~~r~~~~~~------~~---~~~~~l~e~l~~-------aDiV~~  205 (286)
                      -.+|||||+|.   ||+..+..++..+ ++++  +++++.++..      +.   ..+.++++++++       .|+|++
T Consensus        37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I  116 (417)
T 3v5n_A           37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAI  116 (417)
T ss_dssp             CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEE
T ss_pred             cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEE
Confidence            35899999999   9999988877665 5765  5688765432      33   457899999876       899999


Q ss_pred             eccCChhhhhcccHHHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHhCCe
Q 043239          206 CCALTEETHHMINKDVMTALGKE-GVIINVG-RGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       206 ~lp~~~~t~~~i~~~~l~~mk~g-~ilvn~s-rg~~vd~~al~~al~~~~i  254 (286)
                      ++|......     -....++.| .+|+.-- .-.+-+.+.|.++.++.++
T Consensus       117 ~tp~~~H~~-----~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~  162 (417)
T 3v5n_A          117 VTPNHVHYA-----AAKEFLKRGIHVICDKPLTSTLADAKKLKKAADESDA  162 (417)
T ss_dssp             CSCTTSHHH-----HHHHHHTTTCEEEEESSSCSSHHHHHHHHHHHHHCSS
T ss_pred             CCCcHHHHH-----HHHHHHhCCCeEEEECCCcCCHHHHHHHHHHHHHcCC
Confidence            999653322     122223344 2444321 2233445555555555443

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.29  E-value=0.017  Score=54.27  Aligned_cols=87  Identities=14%  Similarity=0.220  Sum_probs=65.0

Q ss_pred             CCCCEEEEEcCC----------hHHHHHHHHhccC-CCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhh
Q 043239          146 LGGKRVGIVGLG----------SIGSEVAKRLVPF-GCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETH  214 (286)
Q Consensus       146 l~g~~vgIiG~G----------~iG~~~A~~l~~~-g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~  214 (286)
                      +.|++|+|+|+.          .-...+++.|... |.+|.+||+.....   ....++++.++++|.|++++. .++-+
T Consensus       313 ~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~---~~~~~~~~~~~~ad~vvi~t~-~~~f~  388 (431)
T 3ojo_A          313 LSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD---FVEHDMSHAVKDASLVLILSD-HSEFK  388 (431)
T ss_dssp             SSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT---TBCSTTHHHHTTCSEEEECSC-CGGGT
T ss_pred             cCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc---cccCCHHHHHhCCCEEEEecC-CHHHh
Confidence            589999999975          3578999999999 99999999876543   235678999999999999875 33333


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcc
Q 043239          215 HMINKDVMTALGKEGVIINVGRGAL  239 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~srg~~  239 (286)
                      .+ +-+.++.|+ +.+++|. |+-+
T Consensus       389 ~~-d~~~~~~~~-~~~i~D~-r~~~  410 (431)
T 3ojo_A          389 NL-SDSHFDKMK-HKVIFDT-KNVV  410 (431)
T ss_dssp             SC-CGGGGTTCS-SCEEEES-SCCC
T ss_pred             cc-CHHHHHhCC-CCEEEEC-CCCC
Confidence            32 333346676 6789996 5543

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.29  E-value=0.0016  Score=60.64  Aligned_cols=61  Identities=16%  Similarity=0.223  Sum_probs=46.3

Q ss_pred             CEEEEEcCChHHHHHHHHhccCC---CEEEEECCCCCCCC------------Cc-------ccccCHHHhhcC--CCEEE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFG---CSIAYTSRKKKPGV------------SY-------PFYANVSGLAAD--SDVLI  204 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g---~~V~~~~r~~~~~~------------~~-------~~~~~l~e~l~~--aDiV~  204 (286)
                      ++|+|+|.|.||+.+++.|...|   .+|.+.+|+.++..            ..       ....++++++++  +|+|+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi   81 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL   81 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence            58999999999999999999887   38999998765321            01       112456677877  89999


Q ss_pred             EeccC
Q 043239          205 VCCAL  209 (286)
Q Consensus       205 ~~lp~  209 (286)
                      .+.|.
T Consensus        82 n~ag~   86 (405)
T 4ina_A           82 NIALP   86 (405)
T ss_dssp             ECSCG
T ss_pred             ECCCc
Confidence            99874

>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*

Probab=96.28  E-value=0.082  Score=47.67  Aligned_cols=139  Identities=8%  Similarity=-0.017  Sum_probs=92.1

Q ss_pred             CcCChhHH-hhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEE-----Ec
Q 043239           82 DHVDLQEC-RRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGI-----VG  155 (286)
Q Consensus        82 d~id~~~~-~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgI-----iG  155 (286)
                      .+-.+..+ +-.+|+|.|..+...-++  .+|+=++.+.++.         |.          ..+. .+|++     +|
T Consensus       123 ~~~~~~~lA~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~---------g~----------~~l~-l~ia~a~~~~vG  180 (324)
T 1js1_X          123 NEVIINQFIQHSGRPVFSMEAATRHPL--QSFADLITIEEYK---------KT----------ARPK-VVMTWAPHPRPL  180 (324)
T ss_dssp             HTHHHHHHHHHSSSCEEESSCSSCCHH--HHHHHHHHHHHHC---------SS----------SSCE-EEEECCCCSSCC
T ss_pred             cchHHHHHHhhCCCCEEECCCCCCCcH--HHHHHHHHHHHHc---------CC----------CCee-EEEEEEcccccC
Confidence            33334433 445799999766333333  3444444433331         10          1366 89999     99


Q ss_pred             CChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEecc-C-Ch---------hhhhcccH
Q 043239          156 LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCA-L-TE---------ETHHMINK  219 (286)
Q Consensus       156 ~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp-~-~~---------~t~~~i~~  219 (286)
                      =+++..+++..+..+|++|.+..+..-...     .+....+++|+++++|+|.+-.= . .+         .....+++
T Consensus       181 D~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~w~s~g~~~~~~~~~r~~~y~vt~  260 (324)
T 1js1_X          181 PQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGD  260 (324)
T ss_dssp             CSHHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECCCCCCSTTCTTCCCCCCTTSSBCH
T ss_pred             CcchHHHHHHHHHHCCCEEEEeCCcccCCChhhccceEEECCHHHHhCCCCEEEecCcccCCCccccchHHHhcCcccCH
Confidence            999999999999999999998887554332     23456899999999999987321 0 01         12356788


Q ss_pred             HHHhcCCCCcEEEEcC---CCcccCHH
Q 043239          220 DVMTALGKEGVIINVG---RGALIDEK  243 (286)
Q Consensus       220 ~~l~~mk~g~ilvn~s---rg~~vd~~  243 (286)
                      +.++.+| +++|.-+.   ||.=|+.+
T Consensus       261 e~l~~a~-~ai~MHcLP~~Rg~EI~~e  286 (324)
T 1js1_X          261 RQMAVTN-NAYFMHCLPVRRNMIVTDD  286 (324)
T ss_dssp             HHHTTSS-SCEEECCSCCCBTTTBCHH
T ss_pred             HHHHhcC-CcEEECCCCCCCCcccCHH
Confidence            9999999 99999886   46544443

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.23  E-value=0.011  Score=51.79  Aligned_cols=61  Identities=23%  Similarity=0.283  Sum_probs=44.8

Q ss_pred             CCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCC--------------CCcc-------cccCHHHhhcCCCEEEE
Q 043239          148 GKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPG--------------VSYP-------FYANVSGLAADSDVLIV  205 (286)
Q Consensus       148 g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~--------------~~~~-------~~~~l~e~l~~aDiV~~  205 (286)
                      .++|.|.|. |.+|+.+++.|.+.|++|.+.+|+....              .+..       ...++.++++.+|+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~   83 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   83 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence            468999995 9999999999999999999999875321              1111       12345567778888877


Q ss_pred             ecc
Q 043239          206 CCA  208 (286)
Q Consensus       206 ~lp  208 (286)
                      +.+
T Consensus        84 ~a~   86 (308)
T 1qyc_A           84 TVG   86 (308)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            664

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=96.22  E-value=0.013  Score=53.51  Aligned_cols=148  Identities=15%  Similarity=0.104  Sum_probs=95.4

Q ss_pred             HHHhccCCCccEEEEcCCCCCcCChhH-HhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCC
Q 043239           62 SDTLSLLPALEIVVGSTAGIDHVDLQE-CRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAY  140 (286)
Q Consensus        62 ~~~l~~~~~Lk~i~~~~~G~d~id~~~-~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~  140 (286)
                      ..++.++.  -.|..+..+  +=.+.. ++-.+|+|.|..+...-++  .+|+=++.+.++.         |        
T Consensus       116 arvLs~~~--D~IviR~~~--~~~~~~lA~~s~vPVINa~~~~~HPt--QaLaDl~Ti~E~~---------g--------  172 (359)
T 2w37_A          116 AKVLGSMF--DGIEFRGFK--QSDAEILARDSGVPVWNGLTDEWHPT--QMLADFMTVKENF---------G--------  172 (359)
T ss_dssp             HHHHHHHC--SEEEEESSC--HHHHHHHHHHSSSCEEEEECSSCCHH--HHHHHHHHHHHHH---------S--------
T ss_pred             HHHHHHhc--CEEEEecCC--hHHHHHHHHhCCCCEEcCCCCCCCcc--HHHHHHHHHHHHh---------C--------
Confidence            34444443  445555432  222333 3445799999765333332  3444444433321         1        


Q ss_pred             CCcccCCCCEEEEEcCC--hHHHHHHHHhccCCCEEEEECCCCCCCC--------------C--cccccCHHHhhcCCCE
Q 043239          141 PLGSTLGGKRVGIVGLG--SIGSEVAKRLVPFGCSIAYTSRKKKPGV--------------S--YPFYANVSGLAADSDV  202 (286)
Q Consensus       141 ~~~~~l~g~~vgIiG~G--~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------------~--~~~~~~l~e~l~~aDi  202 (286)
                          .+.|.+|+++|=|  ++..+++..+..+|++|.+..+..-...              +  +....+++|+++++|+
T Consensus       173 ----~l~gl~va~vGD~~~rva~Sl~~~~~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDv  248 (359)
T 2w37_A          173 ----KLQGLTLTFMGDGRNNVANSLLVTGAILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNV  248 (359)
T ss_dssp             ----CCTTCEEEEESCTTSHHHHHHHHHHHHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSE
T ss_pred             ----CcCCeEEEEECCCccchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhcCCCE
Confidence                3789999999985  9999999999999999998887543221              1  2236789999999999


Q ss_pred             EEEecc----CC-hh------hhhcccHHHHhcCC---CCcEEEEcCC
Q 043239          203 LIVCCA----LT-EE------THHMINKDVMTALG---KEGVIINVGR  236 (286)
Q Consensus       203 V~~~lp----~~-~~------t~~~i~~~~l~~mk---~g~ilvn~sr  236 (286)
                      |.+-.=    .. ..      ....++.+.++.+|   ++++|.-+.-
T Consensus       249 vytd~w~smg~ee~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcLP  296 (359)
T 2w37_A          249 VYTDVWVSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCLP  296 (359)
T ss_dssp             EEECCSCCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECSC
T ss_pred             EEEcccccccccchHHHHHHhhccccCHHHHHhhCCCCCCEEEECCCC
Confidence            987332    00 11      23557889999999   9999999853

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=96.21  E-value=0.0031  Score=57.32  Aligned_cols=92  Identities=14%  Similarity=0.118  Sum_probs=59.1

Q ss_pred             CCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCC--------CCc--------ccccCHHHhhcCCCEEEEeccC
Q 043239          147 GGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPG--------VSY--------PFYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~--------~~~--------~~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      .+++|.|.| .|.+|+.+++.|...|++|.+.+|+....        .+.        ....++.++++.+|+|+.+...
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~   83 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   83 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence            367899999 59999999999999999999988876542        111        1122356778999999876643


Q ss_pred             ChhhhhcccHHHHhcCCC-C--cEEEEcCCCc
Q 043239          210 TEETHHMINKDVMTALGK-E--GVIINVGRGA  238 (286)
Q Consensus       210 ~~~t~~~i~~~~l~~mk~-g--~ilvn~srg~  238 (286)
                      .........+..++.++. |  ..||.+|...
T Consensus        84 ~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           84 QAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             TTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence            211111222344444422 3  3677877654

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=96.20  E-value=0.0053  Score=55.74  Aligned_cols=99  Identities=17%  Similarity=0.205  Sum_probs=61.7

Q ss_pred             CEEEEEcCChHHHHHHHHhccC---------CCEE-EEECCCCCCCCCc---ccccCHHHhhcCCCEEEEeccCChhhhh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF---------GCSI-AYTSRKKKPGVSY---PFYANVSGLAADSDVLIVCCALTEETHH  215 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~---------g~~V-~~~~r~~~~~~~~---~~~~~l~e~l~~aDiV~~~lp~~~~t~~  215 (286)
                      .+|||+|+|.||+.+++.+...         +++| .+++++..+..+.   ....++++++ +.|+|+.|+|.......
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~~~~~~~d~~~ll-~iDvVve~t~~~~~a~~   82 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIPQELLRAEPFDLL-EADLVVEAMGGVEAPLR   82 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSCGGGEESSCCCCT-TCSEEEECCCCSHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccCcccccCCHHHHh-CCCEEEECCCCcHHHHH
Confidence            4799999999999999988765         3565 4677776544322   2356788888 99999999885432221


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHhC
Q 043239          216 MINKDVMTALGKEGVIINVGRGAL-IDEKELVHFLVRG  252 (286)
Q Consensus       216 ~i~~~~l~~mk~g~ilvn~srg~~-vd~~al~~al~~~  252 (286)
                      .    ....++.|.-+|...-..+ ...+.|.++.+++
T Consensus        83 ~----~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~  116 (332)
T 2ejw_A           83 L----VLPALEAGIPLITANKALLAEAWESLRPFAEEG  116 (332)
T ss_dssp             H----HHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred             H----HHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence            2    1223445544444322212 3556666666655

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.19  E-value=0.005  Score=55.73  Aligned_cols=86  Identities=24%  Similarity=0.371  Sum_probs=60.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc-cccCHHHhhcCCCEEEEeccCChhhhhcccHH
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP-FYANVSGLAADSDVLIVCCALTEETHHMINKD  220 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~-~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~  220 (286)
                      .|.+|.|+|.|.+|...++.++.+|++|++.+++.++..     +.. ...+.+++.+..|+|+-++....     .-..
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~-----~~~~  250 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHY-----DLKD  250 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCC-----CHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHH-----HHHH
Confidence            478999999999999999999999999999998876532     221 11233333346889988876331     1235


Q ss_pred             HHhcCCCCcEEEEcCCC
Q 043239          221 VMTALGKEGVIINVGRG  237 (286)
Q Consensus       221 ~l~~mk~g~ilvn~srg  237 (286)
                      .++.++++..++.++..
T Consensus       251 ~~~~l~~~G~iv~~G~~  267 (348)
T 3two_A          251 YLKLLTYNGDLALVGLP  267 (348)
T ss_dssp             HHTTEEEEEEEEECCCC
T ss_pred             HHHHHhcCCEEEEECCC
Confidence            56677777777777543

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.18  E-value=0.002  Score=61.13  Aligned_cols=63  Identities=19%  Similarity=0.256  Sum_probs=47.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------Ccc-------cccCHHHh-hcCCCEEEEeccC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SYP-------FYANVSGL-AADSDVLIVCCAL  209 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~~-------~~~~l~e~-l~~aDiV~~~lp~  209 (286)
                      ..|+|.|+|+|.+|+.+|+.|...|++|++.+++++...      +..       ....|+++ +++||+++.+++.
T Consensus         2 ~~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~   78 (461)
T 4g65_A            2 NAMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNT   78 (461)
T ss_dssp             CCEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSC
T ss_pred             CcCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCC
Confidence            357999999999999999999999999999998765421      111       12234454 6889998877654

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.18  E-value=0.0016  Score=57.54  Aligned_cols=41  Identities=29%  Similarity=0.536  Sum_probs=36.7

Q ss_pred             CCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCC
Q 043239          141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       141 ~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      +...++.|++|.|+|.|.+|...++.|...|++|+++++..
T Consensus         6 pl~~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A            6 QLAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             EEEECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             eEEEEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            44567899999999999999999999999999999988654

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.16  E-value=0.0099  Score=52.11  Aligned_cols=34  Identities=24%  Similarity=0.326  Sum_probs=30.6

Q ss_pred             CCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCC
Q 043239          148 GKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       148 g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      +++|.|.|. |.+|+.+++.|...|++|.+.+|+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   36 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence            578999995 9999999999999999999988875

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=96.16  E-value=0.023  Score=53.10  Aligned_cols=105  Identities=17%  Similarity=0.252  Sum_probs=73.2

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCCEEE-EECCCCC----------------CCCC-c----ccccCHHHhh-cC
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA-YTSRKKK----------------PGVS-Y----PFYANVSGLA-AD  199 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~-~~~r~~~----------------~~~~-~----~~~~~l~e~l-~~  199 (286)
                      +.++.|++|.|-|+|++|+..|+.|...|.+|+ +.|.+..                ...+ .    ....+.++++ ..
T Consensus       216 g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~~~~~i~~~~  295 (424)
T 3k92_A          216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVITNEELLEKD  295 (424)
T ss_dssp             TCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCBCHHHHHHSC
T ss_pred             CCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEecCccceecc
Confidence            456899999999999999999999999999975 5565421                0001 0    1122445544 46


Q ss_pred             CCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          200 SDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       200 aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      ||+++=|.     +.+.|+.+....++ -.+++-.+.+.+. . +..+.|.+++|.
T Consensus       296 ~DIliPcA-----~~n~I~~~~a~~l~-ak~V~EgAN~p~t-~-eA~~iL~~rGI~  343 (424)
T 3k92_A          296 CDILVPAA-----ISNQITAKNAHNIQ-ASIVVERANGPTT-I-DATKILNERGVL  343 (424)
T ss_dssp             CSEEEECS-----CSSCBCTTTGGGCC-CSEEECCSSSCBC-H-HHHHHHHHTTCE
T ss_pred             ccEEeecC-----cccccChhhHhhcC-ceEEEcCCCCCCC-H-HHHHHHHHCCCE
Confidence            99997764     35678888877774 4577888888864 3 345778887774

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.15  E-value=0.0085  Score=53.17  Aligned_cols=64  Identities=16%  Similarity=0.122  Sum_probs=47.8

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCC------------C--------CcccccCHHHhhcCCCEE
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPG------------V--------SYPFYANVSGLAADSDVL  203 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~------------~--------~~~~~~~l~e~l~~aDiV  203 (286)
                      .+.+++|.|.|. |.||+.+++.|...|++|++.+|+....            .        ......+++++++.+|+|
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v   87 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGV   87 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEE
Confidence            467899999997 9999999999999999999988864210            1        111123456677789999


Q ss_pred             EEecc
Q 043239          204 IVCCA  208 (286)
Q Consensus       204 ~~~lp  208 (286)
                      +.+..
T Consensus        88 ih~A~   92 (342)
T 1y1p_A           88 AHIAS   92 (342)
T ss_dssp             EECCC
T ss_pred             EEeCC
Confidence            87754

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=96.15  E-value=0.0023  Score=59.01  Aligned_cols=62  Identities=18%  Similarity=0.273  Sum_probs=48.3

Q ss_pred             CCEEEEEcCChHHHHHHHHhccC--CCEEE-EECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPF--GCSIA-YTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~--g~~V~-~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      ..+|||||+| +|+.-++.++..  +++++ +++++.++..      ++..+.|+++++++.|++++++|..
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~   77 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRST   77 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--
T ss_pred             CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCc
Confidence            4589999999 799888888765  57765 6788776432      4556789999999999999999854

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=96.14  E-value=0.0019  Score=59.95  Aligned_cols=63  Identities=14%  Similarity=0.172  Sum_probs=47.2

Q ss_pred             CEEEEEcCChHHHHHHHHhccC---------CCEEE-EECCCCCCCC------Cc-ccccCHHHhhc--CCCEEEEeccC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF---------GCSIA-YTSRKKKPGV------SY-PFYANVSGLAA--DSDVLIVCCAL  209 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~---------g~~V~-~~~r~~~~~~------~~-~~~~~l~e~l~--~aDiV~~~lp~  209 (286)
                      .+|||||+|.||+..++.++..         +.+|+ ++|++.++..      +. ..+.+++++++  +.|+|++++|.
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp~  106 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSPN  106 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCCc
Confidence            5899999999999988887653         34655 6788765432      22 35689999996  57999999985


Q ss_pred             Ch
Q 043239          210 TE  211 (286)
Q Consensus       210 ~~  211 (286)
                      ..
T Consensus       107 ~~  108 (412)
T 4gqa_A          107 HL  108 (412)
T ss_dssp             GG
T ss_pred             HH
Confidence            43

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=96.13  E-value=0.0066  Score=51.61  Aligned_cols=63  Identities=17%  Similarity=0.121  Sum_probs=45.5

Q ss_pred             CCEEEEEcCChHHHHHHHHh--ccCCCEEE-EECCCCC-CC-----CCcc--cccCHHHhhcC--CCEEEEeccCC
Q 043239          148 GKRVGIVGLGSIGSEVAKRL--VPFGCSIA-YTSRKKK-PG-----VSYP--FYANVSGLAAD--SDVLIVCCALT  210 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l--~~~g~~V~-~~~r~~~-~~-----~~~~--~~~~l~e~l~~--aDiV~~~lp~~  210 (286)
                      ..+++|+|+|++|+.+++.+  ...|+++. ++|..+. ..     .+..  ...++++++++  .|++++++|..
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~vIIAvPs~  159 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPST  159 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCEEEECSCGG
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCEEEEecCch
Confidence            46899999999999999984  45678865 5676665 32     1222  24678888764  89999999954

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=96.12  E-value=0.011  Score=53.71  Aligned_cols=62  Identities=19%  Similarity=0.313  Sum_probs=41.9

Q ss_pred             CEEEEEcCChHHHHHHHHhccC-CCEEE-EECCCCCCCC------Ccccc-----------------cCHHHhhcCCCEE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF-GCSIA-YTSRKKKPGV------SYPFY-----------------ANVSGLAADSDVL  203 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~-g~~V~-~~~r~~~~~~------~~~~~-----------------~~l~e~l~~aDiV  203 (286)
                      .+|||+|+|.||+.+++.+... ++++. +.+++.....      ++..+                 .++++++.++|+|
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV   81 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEE
Confidence            3899999999999999999865 45765 5565533210      11111                 1344556689999


Q ss_pred             EEeccCC
Q 043239          204 IVCCALT  210 (286)
Q Consensus       204 ~~~lp~~  210 (286)
                      +.|+|..
T Consensus        82 ~~aTp~~   88 (340)
T 1b7g_O           82 VDTTPNG   88 (340)
T ss_dssp             EECCSTT
T ss_pred             EECCCCc
Confidence            9999854

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=96.11  E-value=0.0052  Score=55.74  Aligned_cols=63  Identities=19%  Similarity=0.251  Sum_probs=45.6

Q ss_pred             CEEEEEcCChHHHHHHHHhccC-CCEEE-EECCCCCCCC------Cc------------------ccccCHHHhhcCCCE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF-GCSIA-YTSRKKKPGV------SY------------------PFYANVSGLAADSDV  202 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~-g~~V~-~~~r~~~~~~------~~------------------~~~~~l~e~l~~aDi  202 (286)
                      .+|||+|+|.||+.+++.+... ++++. +.+++.+...      ++                  ....+.++++.++|+
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDv   82 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCE
Confidence            4899999999999999999865 45765 4566533211      10                  223578888889999


Q ss_pred             EEEeccCCh
Q 043239          203 LIVCCALTE  211 (286)
Q Consensus       203 V~~~lp~~~  211 (286)
                      |+.|+|...
T Consensus        83 V~~aTp~~~   91 (334)
T 2czc_A           83 IVDATPGGI   91 (334)
T ss_dssp             EEECCSTTH
T ss_pred             EEECCCccc
Confidence            999998553

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=96.09  E-value=0.022  Score=53.33  Aligned_cols=105  Identities=10%  Similarity=0.213  Sum_probs=65.4

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCCEEE-EECCCCC----C---CCCc--------------------ccccCHH
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA-YTSRKKK----P---GVSY--------------------PFYANVS  194 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~-~~~r~~~----~---~~~~--------------------~~~~~l~  194 (286)
                      |.++.|++|.|.|+|++|+.+|+.|...|.+|+ +.|.+.+    .   ..+.                    ....+.+
T Consensus       207 g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i~~~  286 (421)
T 2yfq_A          207 GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDE  286 (421)
T ss_dssp             TCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEeCcc
Confidence            446899999999999999999999999999988 4555521    0   0000                    0011123


Q ss_pred             Hhh-cCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          195 GLA-ADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       195 e~l-~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      +++ ..||+++-|.     +.+.|+.+....++ ..+++-.+.+.+. .+ -.+.|.+++|.
T Consensus       287 ~~~~~~~DIliP~A-----~~n~i~~~~A~~l~-ak~VvEgAN~P~t-~e-a~~il~~~GI~  340 (421)
T 2yfq_A          287 EFWTKEYDIIVPAA-----LENVITGERAKTIN-AKLVCEAANGPTT-PE-GDKVLTERGIN  340 (421)
T ss_dssp             --------CEEECS-----CSSCSCHHHHTTCC-CSEEECCSSSCSC-HH-HHHHHHHHTCE
T ss_pred             chhcCCccEEEEcC-----CcCcCCcccHHHcC-CeEEEeCCccccC-HH-HHHHHHHCCCE
Confidence            333 3689888775     35678888888883 5678888888864 33 33556666654

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=96.09  E-value=0.02  Score=51.38  Aligned_cols=94  Identities=14%  Similarity=0.222  Sum_probs=60.1

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccCC--CEEEEECCCCCCC------C---C--ccc---ccCHHHhhcCCCEEEEeccCCh
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPFG--CSIAYTSRKKKPG------V---S--YPF---YANVSGLAADSDVLIVCCALTE  211 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~g--~~V~~~~r~~~~~------~---~--~~~---~~~l~e~l~~aDiV~~~lp~~~  211 (286)
                      ++|+|+|. |.+|..++..|...|  .+|..+|+.....      .   .  ...   ..++++.+++||+|+++.....
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~   80 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence            48999998 999999999998877  5899998865110      0   1  111   1367788999999999864321


Q ss_pred             h---hh-hc------ccHHH---HhcCCCCcEEEEcCCCcccCHHH
Q 043239          212 E---TH-HM------INKDV---MTALGKEGVIINVGRGALIDEKE  244 (286)
Q Consensus       212 ~---t~-~~------i~~~~---l~~mk~g~ilvn~srg~~vd~~a  244 (286)
                      .   ++ .+      +-++.   +....|.++++++  ..++|.-.
T Consensus        81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~--sNPv~~~~  124 (314)
T 1mld_A           81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICII--SNPVNSTI  124 (314)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEEC--SSCHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEE--CCCcchhH
Confidence            1   10 01      01111   2222578899997  44566554

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.07  E-value=0.0042  Score=58.58  Aligned_cols=110  Identities=15%  Similarity=0.166  Sum_probs=70.3

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC---------CCcccc--cCHHHhhcC-CCEEEEe--ccCC
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG---------VSYPFY--ANVSGLAAD-SDVLIVC--CALT  210 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~---------~~~~~~--~~l~e~l~~-aDiV~~~--lp~~  210 (286)
                      ++.|++|.|||+|..|.++|+.|+..|++|.++|......         .+....  ...++++.+ +|+|+++  +|.+
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~   85 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYN   85 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTT
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCC
Confidence            4679999999999999999999999999999999865311         122111  123345666 8999876  3221


Q ss_pred             -hhh-------hhcccH-HHHhcCCCCcE-EEEcCCCcccCHHHHHHHHHhCCe
Q 043239          211 -EET-------HHMINK-DVMTALGKEGV-IINVGRGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       211 -~~t-------~~~i~~-~~l~~mk~g~i-lvn~srg~~vd~~al~~al~~~~i  254 (286)
                       +..       ..++.+ +.+..+.+..+ -|-=+.|......-+...|+....
T Consensus        86 ~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~  139 (451)
T 3lk7_A           86 NPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQ  139 (451)
T ss_dssp             SHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred             ChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence             111       113333 33433333333 333358888888888888887654

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=96.07  E-value=0.0072  Score=53.47  Aligned_cols=40  Identities=28%  Similarity=0.413  Sum_probs=35.4

Q ss_pred             cccCCCCEEEEEcCC---hHHHHHHHHhccCCCEEEEECCCCC
Q 043239          143 GSTLGGKRVGIVGLG---SIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G---~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      ...+.||++.|.|.+   .||+.+|+.|...|++|++.+|+.+
T Consensus        25 ~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~   67 (296)
T 3k31_A           25 GMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSET   67 (296)
T ss_dssp             CCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             hhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChH
Confidence            446899999999986   8999999999999999999988753

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=96.06  E-value=0.0032  Score=57.01  Aligned_cols=63  Identities=22%  Similarity=0.217  Sum_probs=48.9

Q ss_pred             CCEEEEEcCC-hHHHHHHHHhccC--CCEE-EEECCCCCCCC------Cc-ccccCHHHhhc--CCCEEEEeccCC
Q 043239          148 GKRVGIVGLG-SIGSEVAKRLVPF--GCSI-AYTSRKKKPGV------SY-PFYANVSGLAA--DSDVLIVCCALT  210 (286)
Q Consensus       148 g~~vgIiG~G-~iG~~~A~~l~~~--g~~V-~~~~r~~~~~~------~~-~~~~~l~e~l~--~aDiV~~~lp~~  210 (286)
                      -.+|||||+| .+|+..++.++..  ++++ .++|+++++..      +. ..+.+++++++  +.|+|++++|..
T Consensus        18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~   93 (340)
T 1zh8_A           18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVE   93 (340)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGG
T ss_pred             ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCch
Confidence            3589999999 8999999999876  4676 57888765432      22 45789999986  589999999854

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=96.05  E-value=0.0065  Score=55.15  Aligned_cols=92  Identities=14%  Similarity=0.239  Sum_probs=59.6

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCCC----------------cccccCHHHhhcCCCEEEEe
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGVS----------------YPFYANVSGLAADSDVLIVC  206 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~~----------------~~~~~~l~e~l~~aDiV~~~  206 (286)
                      ....++|+|||.|.||..+|..+...|.  ++..+|+..++..+                .....+.+ .+++||+|+++
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~   94 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIIT   94 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEEC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEc
Confidence            3567899999999999999999887776  89999986542210                01123444 58999999988


Q ss_pred             ccCCh---hhh-hccc------H---HHHhcCCCCcEEEEcCCC
Q 043239          207 CALTE---ETH-HMIN------K---DVMTALGKEGVIINVGRG  237 (286)
Q Consensus       207 lp~~~---~t~-~~i~------~---~~l~~mk~g~ilvn~srg  237 (286)
                      ....+   .++ .++.      +   +.+....|++++++++..
T Consensus        95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNP  138 (331)
T 4aj2_A           95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNP  138 (331)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCh
Confidence            54221   111 1111      1   122333788999999754

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=96.04  E-value=0.0023  Score=59.29  Aligned_cols=64  Identities=16%  Similarity=0.084  Sum_probs=49.1

Q ss_pred             CCEEEEEcCCh---HHHHHHHHhccCC-CEEE--EECCCCCCCC------Cc---ccccCHHHhhcC-------CCEEEE
Q 043239          148 GKRVGIVGLGS---IGSEVAKRLVPFG-CSIA--YTSRKKKPGV------SY---PFYANVSGLAAD-------SDVLIV  205 (286)
Q Consensus       148 g~~vgIiG~G~---iG~~~A~~l~~~g-~~V~--~~~r~~~~~~------~~---~~~~~l~e~l~~-------aDiV~~  205 (286)
                      ..+|||||+|.   ||+..+..++..+ ++++  ++|++.+...      +.   ..+.++++++++       .|+|++
T Consensus        12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i   91 (398)
T 3dty_A           12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSI   91 (398)
T ss_dssp             CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEE
T ss_pred             cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEE
Confidence            46899999999   9999998887654 6765  4688765422      33   457899999875       899999


Q ss_pred             eccCCh
Q 043239          206 CCALTE  211 (286)
Q Consensus       206 ~lp~~~  211 (286)
                      ++|...
T Consensus        92 ~tp~~~   97 (398)
T 3dty_A           92 ATPNGT   97 (398)
T ss_dssp             ESCGGG
T ss_pred             CCCcHH
Confidence            998553

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=96.03  E-value=0.0093  Score=52.59  Aligned_cols=60  Identities=20%  Similarity=0.305  Sum_probs=43.5

Q ss_pred             CCEEEEEcC-ChHHHHHHHHhc-cCCCEEE-EECCCCCCCC-------------CcccccCHHHhhcCCCEEEEec
Q 043239          148 GKRVGIVGL-GSIGSEVAKRLV-PFGCSIA-YTSRKKKPGV-------------SYPFYANVSGLAADSDVLIVCC  207 (286)
Q Consensus       148 g~~vgIiG~-G~iG~~~A~~l~-~~g~~V~-~~~r~~~~~~-------------~~~~~~~l~e~l~~aDiV~~~l  207 (286)
                      .++|+|+|+ |.||+.+++.+. .-|++++ +++++.....             +.....++++++.++|+|+-+.
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft   80 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT   80 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcC
Confidence            368999998 999999999876 4578876 6777653210             1222467888888999999454

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=96.01  E-value=0.0069  Score=55.10  Aligned_cols=87  Identities=16%  Similarity=0.204  Sum_probs=54.4

Q ss_pred             CEEEEEc-CChHHHHHHHHhccC-CCEEEEE-CCCCCCCC------------Cc--cccc---CHHHhhcCCCEEEEecc
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPF-GCSIAYT-SRKKKPGV------------SY--PFYA---NVSGLAADSDVLIVCCA  208 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~-g~~V~~~-~r~~~~~~------------~~--~~~~---~l~e~l~~aDiV~~~lp  208 (286)
                      .+|+|+| .|.+|+.+.+.|... .+++... +++..+..            +.  ..+.   +.+++++++|+|+.|+|
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~p   84 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATA   84 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECSC
T ss_pred             eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECCC
Confidence            5899999 699999999999874 4576544 33311111            10  0111   34455589999999998


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 043239          209 LTEETHHMINKDVMTALGKEGVIINVGRGALI  240 (286)
Q Consensus       209 ~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~v  240 (286)
                      ... +..+. ...   ++.|+.+||.|..--.
T Consensus        85 ~~~-s~~~~-~~~---~~~g~~vIDlSa~fR~  111 (337)
T 3dr3_A           85 HEV-SHDLA-PQF---LEAGCVVFDLSGAFRV  111 (337)
T ss_dssp             HHH-HHHHH-HHH---HHTTCEEEECSSTTSS
T ss_pred             hHH-HHHHH-HHH---HHCCCEEEEcCCcccc
Confidence            432 22221 222   4679999999865434

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=95.99  E-value=0.0084  Score=54.35  Aligned_cols=105  Identities=10%  Similarity=0.111  Sum_probs=63.2

Q ss_pred             CEEEEEcCChHHHHHHHHhccC--------CCEEE-EECCCCCCCCC-c------------c---ccc---CHHHhh-cC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF--------GCSIA-YTSRKKKPGVS-Y------------P---FYA---NVSGLA-AD  199 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~--------g~~V~-~~~r~~~~~~~-~------------~---~~~---~l~e~l-~~  199 (286)
                      .+|||||+|.||+.+++.+...        +++|. +++++...... .            .   ...   ++++++ .+
T Consensus         7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~   86 (331)
T 3c8m_A            7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALARD   86 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHSS
T ss_pred             EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCCC
Confidence            4899999999999999988653        35654 66776543221 1            0   123   788887 35


Q ss_pred             CCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHhCCe
Q 043239          200 SDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGAL-IDEKELVHFLVRGSL  254 (286)
Q Consensus       200 aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~-vd~~al~~al~~~~i  254 (286)
                      .|+|+.|+|.. .+...-.+.....++.|.-+|...-..+ ...+.|.++.++.+.
T Consensus        87 iDvVv~~t~~~-~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv  141 (331)
T 3c8m_A           87 FDIVVDATPAS-ADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNR  141 (331)
T ss_dssp             CSEEEECSCCC-SSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEECCCCC-CccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCC
Confidence            89999999964 1111111223344566766665433333 244566666666554

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=95.99  E-value=0.0095  Score=54.22  Aligned_cols=38  Identities=21%  Similarity=0.549  Sum_probs=33.7

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKK  181 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~  181 (286)
                      ..|++++|.|+|+|.+|..+|+.|...|. +++++|+..
T Consensus        30 ~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           30 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            46899999999999999999999999998 788887643

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=95.99  E-value=0.044  Score=51.20  Aligned_cols=105  Identities=18%  Similarity=0.269  Sum_probs=71.9

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCCEEE-EECCCCCC--CC--------------C-ccc-ccCHHHhh-cCCCE
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA-YTSRKKKP--GV--------------S-YPF-YANVSGLA-ADSDV  202 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~-~~~r~~~~--~~--------------~-~~~-~~~l~e~l-~~aDi  202 (286)
                      +.++.|++|.|.|+|++|+.+|+.|...|.+|+ +.|++..-  ..              + ... ..+-++++ ..||+
T Consensus       213 g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~~~~DV  292 (419)
T 3aoe_E          213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFGLEAEV  292 (419)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGGSSCSE
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhccCceE
Confidence            446899999999999999999999999999987 55553210  00              0 000 01113333 37999


Q ss_pred             EEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          203 LIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       203 V~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      ++-|.     +.+.|+.+..+.++- .+++.-+.+.+. .+ -.+.|.+++|.
T Consensus       293 liP~A-----~~n~i~~~~A~~l~a-k~V~EgAN~p~t-~~-A~~~L~~~Gi~  337 (419)
T 3aoe_E          293 LVLAA-----REGALDGDRARQVQA-QAVVEVANFGLN-PE-AEAYLLGKGAL  337 (419)
T ss_dssp             EEECS-----CTTCBCHHHHTTCCC-SEEEECSTTCBC-HH-HHHHHHHHTCE
T ss_pred             EEecc-----cccccccchHhhCCc-eEEEECCCCcCC-HH-HHHHHHHCCCE
Confidence            98774     456788888888854 588999998864 33 34667777665

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=95.98  E-value=0.004  Score=56.96  Aligned_cols=63  Identities=14%  Similarity=0.191  Sum_probs=47.8

Q ss_pred             CCEEEEEcCChHHH-HHHHHhccCCCEEE-EECCCCCCCC------C-cccccCHHHhhcC--CCEEEEeccCC
Q 043239          148 GKRVGIVGLGSIGS-EVAKRLVPFGCSIA-YTSRKKKPGV------S-YPFYANVSGLAAD--SDVLIVCCALT  210 (286)
Q Consensus       148 g~~vgIiG~G~iG~-~~A~~l~~~g~~V~-~~~r~~~~~~------~-~~~~~~l~e~l~~--aDiV~~~lp~~  210 (286)
                      ..+|||||+|.+|. .++..+..-+++++ ++|++.++..      + ...+.++++++++  .|+|++++|..
T Consensus        26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~   99 (361)
T 3u3x_A           26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSS   99 (361)
T ss_dssp             CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHH
T ss_pred             CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChH
Confidence            45999999999995 56777776788865 7788765422      2 3457899999975  89999999843

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=95.97  E-value=0.12  Score=47.35  Aligned_cols=127  Identities=13%  Similarity=0.080  Sum_probs=83.0

Q ss_pred             HHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCC--hHHHHHHH
Q 043239           88 ECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLG--SIGSEVAK  165 (286)
Q Consensus        88 ~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G--~iG~~~A~  165 (286)
                      .+...+|+|.|.-+...-++  .+|+=++.+.++.                   .+..+.|.+|+++|=+  ++..+.+.
T Consensus       142 la~~s~vPVING~g~~~HPt--QaL~Dl~Ti~e~~-------------------~~~~l~gl~ia~vGD~~~~va~S~~~  200 (358)
T 4h31_A          142 LGAFAGVPVWNGLTDEFHPT--QILADFLTMLEHS-------------------QGKALADIQFAYLGDARNNVGNSLMV  200 (358)
T ss_dssp             HHHHSSSCEEESCCSSCCHH--HHHHHHHHHHHTT-------------------TTCCGGGCEEEEESCTTSHHHHHHHH
T ss_pred             hhhhccCceECCCCcCCCch--HHHHHHHHHHHHh-------------------cCCCcCceEEEecCCCCcccchHHHH
Confidence            34556899999444332222  3444444433321                   1235889999999954  89999999


Q ss_pred             HhccCCCEEEEECCCCCCCC--------------C--cccccCHHHhhcCCCEEEEecc----CChh---------hhhc
Q 043239          166 RLVPFGCSIAYTSRKKKPGV--------------S--YPFYANVSGLAADSDVLIVCCA----LTEE---------THHM  216 (286)
Q Consensus       166 ~l~~~g~~V~~~~r~~~~~~--------------~--~~~~~~l~e~l~~aDiV~~~lp----~~~~---------t~~~  216 (286)
                      .+..+|++|.+..+..-...              +  +....+++|+++++|+|.+-.=    ..++         ...-
T Consensus       201 ~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~y~  280 (358)
T 4h31_A          201 GAAKMGMDIRLVGPQAYWPDEELVAACQAIAKQTGGKITLTENVAEGVQGCDFLYTDVWVSMGESPEAWDERVALMKPYQ  280 (358)
T ss_dssp             HHHHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEECCSSCTTSCTTHHHHHHHHHGGGC
T ss_pred             HHHhcCceEEEeCCcccCCCHHHHHHHHHHHHHcCCcceeccCHHHHhccCcEEEEEEEEEcccCchhHHHHHHHHhCcc
Confidence            99999999998887442211              1  2235789999999999975321    1111         1234


Q ss_pred             ccHHHHhc-CCCCcEEEEcC
Q 043239          217 INKDVMTA-LGKEGVIINVG  235 (286)
Q Consensus       217 i~~~~l~~-mk~g~ilvn~s  235 (286)
                      ++.+.++. .||+++|.-+.
T Consensus       281 v~~~~l~~~ak~~~i~mH~L  300 (358)
T 4h31_A          281 VNMNVLKQTGNPNVKFMHCL  300 (358)
T ss_dssp             BCHHHHHHTTCTTCEEEECS
T ss_pred             cCHHHHHhcCCCCcEEECCC
Confidence            67888876 47899999885

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=95.97  E-value=0.018  Score=54.47  Aligned_cols=108  Identities=19%  Similarity=0.276  Sum_probs=75.2

Q ss_pred             CCCCEEEEEcCC----hHHHHHHHHhccCC-CEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHH
Q 043239          146 LGGKRVGIVGLG----SIGSEVAKRLVPFG-CSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKD  220 (286)
Q Consensus       146 l~g~~vgIiG~G----~iG~~~A~~l~~~g-~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~  220 (286)
                      ++-++|+|||.+    .+|..+.+.|+..| ..|+.+++......+...+.++.++....|++++++|. +....++.+ 
T Consensus         6 ~~p~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~~~i~G~~~y~sl~~lp~~~Dlavi~vp~-~~~~~~v~e-   83 (457)
T 2csu_A            6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDIPDEIDLAIIVVPK-RFVKDTLIQ-   83 (457)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSCSSCCSEEEECSCH-HHHHHHHHH-
T ss_pred             cCCCeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCCCeECCEeccCCHHHcCCCCCEEEEecCH-HHHHHHHHH-
Confidence            456799999998    89999999999884 78988988755555666778899988889999999983 344444432 


Q ss_pred             HHhcCCCCcEEEEcCCC--cccC-----HHHHHHHHHhCCeeEE
Q 043239          221 VMTALGKEGVIINVGRG--ALID-----EKELVHFLVRGSLVEL  257 (286)
Q Consensus       221 ~l~~mk~g~ilvn~srg--~~vd-----~~al~~al~~~~i~ga  257 (286)
                      ..+. .-.. +|..+.|  +.-+     ++.+.+.+++.+++-.
T Consensus        84 ~~~~-Gi~~-vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~vi  125 (457)
T 2csu_A           84 CGEK-GVKG-VVIITAGFGETGEEGKREEKELVEIAHKYGMRII  125 (457)
T ss_dssp             HHHH-TCCE-EEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEE
T ss_pred             HHHc-CCCE-EEEecCCCCccccccHHHHHHHHHHHHHcCCEEE
Confidence            2221 2223 3444333  2223     6788888888776643

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=95.93  E-value=0.012  Score=51.87  Aligned_cols=61  Identities=16%  Similarity=0.250  Sum_probs=46.8

Q ss_pred             CCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC---------CcccccCHHHhhcCCCEEEEeccC
Q 043239          148 GKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV---------SYPFYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       148 g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~---------~~~~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      +++|.|.| .|.+|+.+++.|...|++|.+.+|+.....         ... ..++.++++++|+|+.+...
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~   72 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYT-LEDLINQLNDVDAVVHLAAT   72 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----CCEEEECCCC-HHHHHHHTTTCSEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCcccCCceEEEEcccc-HHHHHHhhcCCCEEEEcccc
Confidence            47899999 699999999999999999999998743321         122 34567788899999887653

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=95.91  E-value=0.013  Score=50.50  Aligned_cols=37  Identities=22%  Similarity=0.446  Sum_probs=32.9

Q ss_pred             cCCCCEEEEEcC-Ch--HHHHHHHHhccCCCEEEEECCCC
Q 043239          145 TLGGKRVGIVGL-GS--IGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~--iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      ++.|+++.|.|. |.  ||..+|+.|...|++|++.+|+.
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   43 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE   43 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence            578999999997 45  99999999999999999888765

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=95.91  E-value=0.0052  Score=56.05  Aligned_cols=63  Identities=17%  Similarity=0.248  Sum_probs=47.8

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHhccCCC--EEEEECCCCCCCC--------------CcccccCHHHhhcCCCEEEEecc
Q 043239          146 LGGKRVGIVGL-GSIGSEVAKRLVPFGC--SIAYTSRKKKPGV--------------SYPFYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~--------------~~~~~~~l~e~l~~aDiV~~~lp  208 (286)
                      +.+++|+|||. |.+|..+|..+...|.  +|..+|...++..              ......+..+.+++||+|+++..
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG   85 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG   85 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence            35689999998 9999999998887774  8999998653211              11123577788999999999853

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=95.90  E-value=0.015  Score=51.42  Aligned_cols=60  Identities=22%  Similarity=0.261  Sum_probs=43.6

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCC---------CCcc-------cccCHHHhhcCCCEEEEecc
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPG---------VSYP-------FYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~---------~~~~-------~~~~l~e~l~~aDiV~~~lp  208 (286)
                      ++|.|.| .|.+|+.+++.|...|++|.+.+|+....         .+..       ...++.++++.+|+|+.+.+
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~   88 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALA   88 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            5899999 59999999999999999999998876421         1111       12345566777887776654

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=95.90  E-value=0.015  Score=51.46  Aligned_cols=61  Identities=15%  Similarity=0.170  Sum_probs=44.1

Q ss_pred             CCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCC-CCC-------------CCc-------ccccCHHHhhcCCCEEEE
Q 043239          148 GKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKK-KPG-------------VSY-------PFYANVSGLAADSDVLIV  205 (286)
Q Consensus       148 g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~-~~~-------------~~~-------~~~~~l~e~l~~aDiV~~  205 (286)
                      .++|.|.|. |.+|+.+++.|...|++|.+.+|+. ...             .+.       ....++.++++.+|+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~   83 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVIS   83 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            468999994 9999999999999999999998875 210             111       112345667777888777


Q ss_pred             ecc
Q 043239          206 CCA  208 (286)
Q Consensus       206 ~lp  208 (286)
                      +..
T Consensus        84 ~a~   86 (321)
T 3c1o_A           84 ALP   86 (321)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            654

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=95.90  E-value=0.048  Score=49.77  Aligned_cols=88  Identities=25%  Similarity=0.285  Sum_probs=57.4

Q ss_pred             CCEEEEEc-CChHHHHHHHHhccCCC-EEEEE-CCCCC-CC---------CCcc-cccCHHHhhcCCCEEEEeccCChhh
Q 043239          148 GKRVGIVG-LGSIGSEVAKRLVPFGC-SIAYT-SRKKK-PG---------VSYP-FYANVSGLAADSDVLIVCCALTEET  213 (286)
Q Consensus       148 g~~vgIiG-~G~iG~~~A~~l~~~g~-~V~~~-~r~~~-~~---------~~~~-~~~~l~e~l~~aDiV~~~lp~~~~t  213 (286)
                      -.+|||+| .|-.|+.+.+.|...-. ++... +++.. +.         .... ...+.++++.++|++++|+|...  
T Consensus        13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~~~Dvvf~alp~~~--   90 (351)
T 1vkn_A           13 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGA--   90 (351)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTH--
T ss_pred             eeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhcCCCEEEECCCcHH--
Confidence            45899997 79999999999997643 66544 32211 10         0001 11245555688999999999542  


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCcccCH
Q 043239          214 HHMINKDVMTALGKEGVIINVGRGALIDE  242 (286)
Q Consensus       214 ~~~i~~~~l~~mk~g~ilvn~srg~~vd~  242 (286)
                          .++..+.+ .|+.+||.|..--.+.
T Consensus        91 ----s~~~~~~~-~g~~VIDlSsdfRl~~  114 (351)
T 1vkn_A           91 ----SYDLVREL-KGVKIIDLGADFRFDD  114 (351)
T ss_dssp             ----HHHHHTTC-CSCEEEESSSTTTCSS
T ss_pred             ----HHHHHHHh-CCCEEEECChhhhCCc
Confidence                24455556 7999999986544443

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=95.88  E-value=0.0083  Score=52.01  Aligned_cols=62  Identities=18%  Similarity=0.233  Sum_probs=47.9

Q ss_pred             CCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCCC---------cccccCHHHhhcCCCEEEEecc
Q 043239          147 GGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS---------YPFYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~---------~~~~~~l~e~l~~aDiV~~~lp  208 (286)
                      .+++|.|.| .|.||+.+++.|...|++|.+.+|+..+...         .....++.+++++.|+|+.+..
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag   73 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMVAGCDGIVHLGG   73 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCCCTTEEEEECCTTCHHHHHHHHTTCSEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccccCCCCEEEEcCCCCHHHHHHHHcCCCEEEECCC
Confidence            467899998 7999999999999999999999988765431         1112346678889999987753

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=95.86  E-value=0.018  Score=54.59  Aligned_cols=91  Identities=12%  Similarity=0.177  Sum_probs=65.4

Q ss_pred             CCCCEEEEEcCCh----------HHHHHHHHhccCCCEEEEECCCCCCCC------------------CcccccCHHHhh
Q 043239          146 LGGKRVGIVGLGS----------IGSEVAKRLVPFGCSIAYTSRKKKPGV------------------SYPFYANVSGLA  197 (286)
Q Consensus       146 l~g~~vgIiG~G~----------iG~~~A~~l~~~g~~V~~~~r~~~~~~------------------~~~~~~~l~e~l  197 (286)
                      +.|++|+|+|+.-          -...+++.|...|.+|.+||+......                  ......+..+.+
T Consensus       327 ~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (467)
T 2q3e_A          327 VTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEAC  406 (467)
T ss_dssp             CTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHHH
T ss_pred             cCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHHH
Confidence            6799999999874          788999999999999999999643211                  112235788899


Q ss_pred             cCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 043239          198 ADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGA  238 (286)
Q Consensus       198 ~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~  238 (286)
                      +++|.|++++.- ++-+.+=-......|+...+++|. |+-
T Consensus       407 ~~ad~~vi~t~~-~~f~~~~~~~~~~~~~~~~~i~D~-r~~  445 (467)
T 2q3e_A          407 DGAHAVVICTEW-DMFKELDYERIHKKMLKPAFIFDG-RRV  445 (467)
T ss_dssp             TTCSEEEECSCC-GGGGGSCHHHHHHHSCSSCEEEES-SCT
T ss_pred             hCCcEEEEecCC-hhhhcCCHHHHHHhcCCCCEEEeC-CCc
Confidence            999999998763 344433223445667776668887 554

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=95.86  E-value=0.014  Score=50.74  Aligned_cols=61  Identities=8%  Similarity=0.076  Sum_probs=46.7

Q ss_pred             CEEEEEc-CChHHHHHHHHhccC-CCEEEEECCCCCCCC-----Cc-------ccccCHHHhhcCCCEEEEeccC
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPF-GCSIAYTSRKKKPGV-----SY-------PFYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~-g~~V~~~~r~~~~~~-----~~-------~~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      |+|.|.| .|.+|+.+++.|... |++|.+.+|+..+..     +.       ....++.++++.+|+|+.+...
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   75 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI   75 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            4789999 599999999999987 899999988765432     11       1124567789999999887654

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.84  E-value=0.015  Score=55.01  Aligned_cols=93  Identities=14%  Similarity=0.212  Sum_probs=66.0

Q ss_pred             cccCCCCEEEEEcCC----------hHHHHHHHHhccCCCEEEEECCCCCCCC----C--cccccCHHHhhcCCCEEEEe
Q 043239          143 GSTLGGKRVGIVGLG----------SIGSEVAKRLVPFGCSIAYTSRKKKPGV----S--YPFYANVSGLAADSDVLIVC  206 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G----------~iG~~~A~~l~~~g~~V~~~~r~~~~~~----~--~~~~~~l~e~l~~aDiV~~~  206 (286)
                      +..+.|++|+|+|+-          .-...+++.|...|.+|.+||+......    +  .....++.+.++++|.|+++
T Consensus       313 ~~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~  392 (450)
T 3gg2_A          313 KGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHV  392 (450)
T ss_dssp             TTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEEC
T ss_pred             cccCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHHHHHhcCccceecCCHHHHhcCCCEEEEc
Confidence            345789999999985          3578999999999999999998763211    1  23346888999999999998


Q ss_pred             ccCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 043239          207 CALTEETHHMINKDVMTALGKEGVIINVGRGA  238 (286)
Q Consensus       207 lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~  238 (286)
                      +. .++-+.+=-....+.|+ +.+++|. |+-
T Consensus       393 t~-~~~f~~~~~~~~~~~~~-~~~i~D~-r~~  421 (450)
T 3gg2_A          393 TE-WKEFRMPDWSALSQAMA-ASLVIDG-RNV  421 (450)
T ss_dssp             SC-CGGGSSCCHHHHHHHSS-SCEEEES-SCC
T ss_pred             cC-CHHHhhcCHHHHHHhcC-CCEEEEC-CCC
Confidence            75 33333322233455575 5689996 554

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=95.83  E-value=0.012  Score=53.95  Aligned_cols=92  Identities=16%  Similarity=0.160  Sum_probs=61.3

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhc--C
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTA--L  225 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~--m  225 (286)
                      -.++.|+|.|.+|+++++.++.+|++|+++|..++...        .+-+..+|-++...|          .+.+..  +
T Consensus       199 ~~~L~I~GaGhva~aLa~la~~lgf~V~v~D~R~~~~~--------~~~fp~a~~v~~~~p----------~~~~~~~~~  260 (362)
T 3on5_A          199 KERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPNQCE--------KHFFPDADEIIVDFP----------ADFLRKFLI  260 (362)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHHTEEEEEEESCGGGGC--------GGGCTTCSEEEESCH----------HHHHHHSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEECCCccccc--------cccCCCceEEecCCH----------HHHHhhcCC
Confidence            45899999999999999999999999999987643321        112345565544333          112222  4


Q ss_pred             CCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEE
Q 043239          226 GKEGVIINVGRGALIDEKELVHFLVRGSLVELV  258 (286)
Q Consensus       226 k~g~ilvn~srg~~vd~~al~~al~~~~i~ga~  258 (286)
                      .+++.+|=+.++.-.|...|..+|+. ...+.+
T Consensus       261 ~~~t~vvv~TH~h~~D~~~L~~aL~~-~~~YiG  292 (362)
T 3on5_A          261 RPDDFVLIMTHHFQKDQEILHFLLEK-ELRYIG  292 (362)
T ss_dssp             CTTCEEEECCSCHHHHHHHHHHHSSS-CCSEEE
T ss_pred             CCCeEEEEEeCCchhhHHHHHHHhcC-CCCEEE
Confidence            56677777777777777777777765 444444

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=95.83  E-value=0.015  Score=51.18  Aligned_cols=40  Identities=30%  Similarity=0.356  Sum_probs=34.8

Q ss_pred             cccCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          143 GSTLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       143 ~~~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      ..++.||++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus        42 ~~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~   82 (291)
T 3ijr_A           42 SEKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEE   82 (291)
T ss_dssp             CSTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            34689999999985 78999999999999999998887654

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=95.82  E-value=0.03  Score=49.82  Aligned_cols=86  Identities=21%  Similarity=0.180  Sum_probs=63.5

Q ss_pred             CCCCEEEEEcC---ChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChh-----
Q 043239          146 LGGKRVGIVGL---GSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEE-----  212 (286)
Q Consensus       146 l~g~~vgIiG~---G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~-----  212 (286)
                      +.|.+|+++|=   +++..+++..+..+|++|.+..+..-...     +.....+++|+++++|+|.+ +-...+     
T Consensus       144 l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~g~~~~~d~~eav~~aDvvy~-~~~q~er~~~~  222 (291)
T 3d6n_B          144 VKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRDVEVFKVDVFDDVDKGIDWADVVIW-LRLQKERQKEN  222 (291)
T ss_dssp             CTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTGGGGCEEEESSHHHHHHHCSEEEE-CCCCTHHHHTT
T ss_pred             cCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCchHHHCCCEEEcCHHHHhCCCCEEEE-eCcccCccccc
Confidence            78999999996   89999999999999999998887443222     23346899999999999988 443221     


Q ss_pred             ---------hhhcccHHHHhcCCCCcEEEEcC
Q 043239          213 ---------THHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       213 ---------t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                               ...-++.+.++.+|   +|.-+.
T Consensus       223 ~~~~~~~~~~~y~v~~~~l~~a~---i~mH~l  251 (291)
T 3d6n_B          223 YIPSESSYFKQFGLTKERFEKVK---LYMHPG  251 (291)
T ss_dssp             SSSCHHHHHHHHSBCHHHHTTCC---CEECSS
T ss_pred             cchhHHHHHhhcCcCHHHHHhcc---cccCCC
Confidence                     12345667777665   666664

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=95.81  E-value=0.0025  Score=57.98  Aligned_cols=62  Identities=19%  Similarity=0.312  Sum_probs=42.3

Q ss_pred             CEEEEEcCChHHHHHHHHhcc-CCCEEEE-ECCCCCCC------CC------------------cccccCHHHhhcCCCE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVP-FGCSIAY-TSRKKKPG------VS------------------YPFYANVSGLAADSDV  202 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~-~g~~V~~-~~r~~~~~------~~------------------~~~~~~l~e~l~~aDi  202 (286)
                      .+|||+|+|.||+.+++.|.. -++++.+ .+++....      .+                  .....+.++++.++|+
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDv   81 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCE
Confidence            489999999999999999876 3567654 45442210      00                  0001256677789999


Q ss_pred             EEEeccCC
Q 043239          203 LIVCCALT  210 (286)
Q Consensus       203 V~~~lp~~  210 (286)
                      |+.|+|..
T Consensus        82 V~~atp~~   89 (337)
T 1cf2_P           82 VIDCTPEG   89 (337)
T ss_dssp             EEECCSTT
T ss_pred             EEECCCch
Confidence            99999854

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.80  E-value=0.011  Score=53.23  Aligned_cols=108  Identities=16%  Similarity=0.179  Sum_probs=68.8

Q ss_pred             CCCEEEEEcCChHHHH-HHHHhccCCCEEEEECCCCCCC-------CCcccc--cCHHHhh-cCCCEEEEe--ccC-Chh
Q 043239          147 GGKRVGIVGLGSIGSE-VAKRLVPFGCSIAYTSRKKKPG-------VSYPFY--ANVSGLA-ADSDVLIVC--CAL-TEE  212 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~-~A~~l~~~g~~V~~~~r~~~~~-------~~~~~~--~~l~e~l-~~aDiV~~~--lp~-~~~  212 (286)
                      ..++|.|||.|.+|.+ +|+.|+..|++|.++|.+..+.       .+....  .+.+++. .++|+|+.+  +|. .+.
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~   82 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDV   82 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHH
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHH
Confidence            3579999999999996 9999999999999999865432       122211  2344454 579999886  332 222


Q ss_pred             hh-------hcccH-HHHhc-C-CCCc-EEEEcCCCcccCHHHHHHHHHhCCe
Q 043239          213 TH-------HMINK-DVMTA-L-GKEG-VIINVGRGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       213 t~-------~~i~~-~~l~~-m-k~g~-ilvn~srg~~vd~~al~~al~~~~i  254 (286)
                      ..       .++.+ +.+.. + +... +-|-=+.|......-+...|+....
T Consensus        83 ~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~  135 (326)
T 3eag_A           83 VEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGL  135 (326)
T ss_dssp             HHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence            11       13332 23332 3 3322 3444468888888888888887554

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=95.78  E-value=0.0037  Score=57.04  Aligned_cols=88  Identities=24%  Similarity=0.359  Sum_probs=61.9

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCC---CCCC-----Ccccc-c-CHHHhh----cCCCEEEEeccCC
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKK---KPGV-----SYPFY-A-NVSGLA----ADSDVLIVCCALT  210 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~---~~~~-----~~~~~-~-~l~e~l----~~aDiV~~~lp~~  210 (286)
                      .+.|++|.|+|.|.+|..+++.++.+|++|++.+++.   ++..     +.... . ++.+.+    ...|+|+.++...
T Consensus       178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~  257 (366)
T 2cdc_A          178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGAD  257 (366)
T ss_dssp             SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCCh
Confidence            5679999999999999999999999999999999876   3321     22111 1 111111    3589999988643


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCC
Q 043239          211 EETHHMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       211 ~~t~~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                      ...   + +..+..|+++..+|+++.
T Consensus       258 ~~~---~-~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          258 VNI---L-GNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             THH---H-HHHGGGEEEEEEEEECSC
T ss_pred             HHH---H-HHHHHHHhcCCEEEEEec
Confidence            222   0 456778889888998864

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=95.77  E-value=0.0072  Score=53.88  Aligned_cols=38  Identities=29%  Similarity=0.399  Sum_probs=33.7

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKK  181 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~  181 (286)
                      ..|++++|.|||+|.+|..+++.|...|. ++.++|...
T Consensus        32 ~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           32 EKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            46899999999999999999999999887 788888644

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=95.77  E-value=0.014  Score=52.69  Aligned_cols=62  Identities=19%  Similarity=0.243  Sum_probs=45.9

Q ss_pred             CCEEEEEc-CChHHHHHHHHhccCC--CEEEEECCCCCC---------CCC--ccc---ccCHHHhhcCCCEEEEeccC
Q 043239          148 GKRVGIVG-LGSIGSEVAKRLVPFG--CSIAYTSRKKKP---------GVS--YPF---YANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       148 g~~vgIiG-~G~iG~~~A~~l~~~g--~~V~~~~r~~~~---------~~~--~~~---~~~l~e~l~~aDiV~~~lp~  209 (286)
                      .++|+|+| .|.+|..++..|...|  .+|..+|+....         ...  ...   ..++.+.+++||+|+++.+.
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~   86 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGV   86 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCc
Confidence            46899999 8999999999998877  688888865531         001  111   12567889999999999753

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=95.75  E-value=0.0026  Score=57.97  Aligned_cols=63  Identities=11%  Similarity=0.177  Sum_probs=45.9

Q ss_pred             CEEEEEcCChHHHHHHHHhccC--------CCEEE-EECCCCCCCC------Cc-ccccCHHHhhcC--CCEEEEeccCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF--------GCSIA-YTSRKKKPGV------SY-PFYANVSGLAAD--SDVLIVCCALT  210 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~--------g~~V~-~~~r~~~~~~------~~-~~~~~l~e~l~~--aDiV~~~lp~~  210 (286)
                      .+|||||+|.||+..++.++..        +.+|. ++|++.+...      +. ..+.++++++++  .|+|++++|..
T Consensus         7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~~   86 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPGD   86 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCGG
T ss_pred             CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChH
Confidence            4899999999999888776542        23554 6788765432      22 346899999964  79999999855


Q ss_pred             h
Q 043239          211 E  211 (286)
Q Consensus       211 ~  211 (286)
                      -
T Consensus        87 ~   87 (390)
T 4h3v_A           87 S   87 (390)
T ss_dssp             G
T ss_pred             H
Confidence            3

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=95.74  E-value=0.021  Score=52.09  Aligned_cols=85  Identities=18%  Similarity=0.208  Sum_probs=61.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-----Cccc---c----cCHHHhhc-----CCCEEEEecc
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-----SYPF---Y----ANVSGLAA-----DSDVLIVCCA  208 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-----~~~~---~----~~l~e~l~-----~aDiV~~~lp  208 (286)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++..     +...   .    .++.+.+.     ..|+|+-++.
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  271 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG  271 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCC
Confidence            57899999999999999999999999 8999988766532     2211   1    23444332     4899998876


Q ss_pred             CChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 043239          209 LTEETHHMINKDVMTALGKE-GVIINVGR  236 (286)
Q Consensus       209 ~~~~t~~~i~~~~l~~mk~g-~ilvn~sr  236 (286)
                      .. .+    -...++.++++ ..+|.++-
T Consensus       272 ~~-~~----~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          272 NV-GV----MRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             CH-HH----HHHHHHTBCTTTCEEEECSC
T ss_pred             CH-HH----HHHHHHHhhcCCcEEEEEcC
Confidence            32 11    24567889998 88888864

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.73  E-value=0.0057  Score=55.67  Aligned_cols=87  Identities=24%  Similarity=0.297  Sum_probs=59.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc---c--c-CHHHhh-cCCCEEEEeccCChhhh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF---Y--A-NVSGLA-ADSDVLIVCCALTEETH  214 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~---~--~-~l~e~l-~~aDiV~~~lp~~~~t~  214 (286)
                      .|.+|.|+|.|.+|...++.++.+|++|++.+++.++..     +...   .  . ++.+.+ ...|+|+-+++.++  .
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~--~  256 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT--D  256 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST--T
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCc--H
Confidence            478999999999999999999999999999998776532     2211   1  1 333333 46899999886410  0


Q ss_pred             hcccHHHHhcCCCCcEEEEcCC
Q 043239          215 HMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                      ..+ ...++.|+++..++.++.
T Consensus       257 ~~~-~~~~~~l~~~G~iv~~g~  277 (360)
T 1piw_A          257 IDF-NIMPKAMKVGGRIVSISI  277 (360)
T ss_dssp             CCT-TTGGGGEEEEEEEEECCC
T ss_pred             HHH-HHHHHHhcCCCEEEEecC
Confidence            111 245566777777777653

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=95.73  E-value=0.0051  Score=58.22  Aligned_cols=71  Identities=17%  Similarity=0.177  Sum_probs=49.3

Q ss_pred             CCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-------CCccc-ccCH-HHhhcCCCEEEEeccCCh
Q 043239          141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-------VSYPF-YANV-SGLAADSDVLIVCCALTE  211 (286)
Q Consensus       141 ~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-------~~~~~-~~~l-~e~l~~aDiV~~~lp~~~  211 (286)
                      +..-+++|++|.|+|.|.+|...++.|...|++|+++++.....       ..... .... .+.+.++|+|+.+ |..+
T Consensus         5 P~~~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~a-t~~~   83 (457)
T 1pjq_A            5 PIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAA-TDDD   83 (457)
T ss_dssp             EEEECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEEC-CSCH
T ss_pred             eeEEECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCccccCCccEEEEc-CCCH
Confidence            44567899999999999999999999999999999998754321       01110 0111 2345678888765 4444


Q ss_pred             h
Q 043239          212 E  212 (286)
Q Consensus       212 ~  212 (286)
                      +
T Consensus        84 ~   84 (457)
T 1pjq_A           84 T   84 (457)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.70  E-value=0.021  Score=52.10  Aligned_cols=85  Identities=18%  Similarity=0.176  Sum_probs=60.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-----Cccc---c----cCHHHhhc-----CCCEEEEecc
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-----SYPF---Y----ANVSGLAA-----DSDVLIVCCA  208 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-----~~~~---~----~~l~e~l~-----~aDiV~~~lp  208 (286)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.+++.++..     +...   .    .++.+.+.     ..|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  270 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG  270 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCC
Confidence            57899999999999999999999999 8999988766431     2211   1    23444332     4899998876


Q ss_pred             CChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 043239          209 LTEETHHMINKDVMTALGKE-GVIINVGR  236 (286)
Q Consensus       209 ~~~~t~~~i~~~~l~~mk~g-~ilvn~sr  236 (286)
                      .. ++    -...++.++++ ..+|.++-
T Consensus       271 ~~-~~----~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          271 RL-DT----MVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             CH-HH----HHHHHHHBCTTTCEEEECSC
T ss_pred             CH-HH----HHHHHHHhhcCCcEEEEecc
Confidence            32 21    14567788998 88888763

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=95.70  E-value=0.01  Score=55.47  Aligned_cols=61  Identities=21%  Similarity=0.280  Sum_probs=45.9

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------CcccccCHHHhhcCCCEEEE
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------SYPFYANVSGLAADSDVLIV  205 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------~~~~~~~l~e~l~~aDiV~~  205 (286)
                      -+.|++|+|+|-|.+|+.+++.++.+|++|.++++.+....          .......+.++++++|+|+.
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~  102 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVST  102 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEE
Confidence            46799999999999999999999999999999987654311          01111234566778998874

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=95.68  E-value=0.016  Score=53.01  Aligned_cols=62  Identities=11%  Similarity=0.155  Sum_probs=45.0

Q ss_pred             CEEEEEc-CChHHHH-HH----HHhccCC-CEE----------EEECCCCCCCC------Cc-ccccCHHHhhcC--CCE
Q 043239          149 KRVGIVG-LGSIGSE-VA----KRLVPFG-CSI----------AYTSRKKKPGV------SY-PFYANVSGLAAD--SDV  202 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~-~A----~~l~~~g-~~V----------~~~~r~~~~~~------~~-~~~~~l~e~l~~--aDi  202 (286)
                      .+||||| +|.||+. .+    +.++..+ ..+          .+++++.++..      +. ..+.++++++++  .|+
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~   86 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDTM   86 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCCE
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCE
Confidence            4899999 9999998 66    6665443 222          38888776432      33 346899999976  899


Q ss_pred             EEEeccCC
Q 043239          203 LIVCCALT  210 (286)
Q Consensus       203 V~~~lp~~  210 (286)
                      |+++.|..
T Consensus        87 V~i~tp~~   94 (383)
T 3oqb_A           87 FFDAATTQ   94 (383)
T ss_dssp             EEECSCSS
T ss_pred             EEECCCch
Confidence            99999854

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.68  E-value=0.005  Score=56.42  Aligned_cols=85  Identities=22%  Similarity=0.314  Sum_probs=59.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc---ccC---HHHhhcCCCEEEEeccCChhhhh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF---YAN---VSGLAADSDVLIVCCALTEETHH  215 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~---~~~---l~e~l~~aDiV~~~lp~~~~t~~  215 (286)
                      .|.+|.|+|.|.+|...++.++.+|++|++.+++.++..     +...   ..+   .+++....|+|+-++.....   
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~---  270 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN---  270 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCC---
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHHH---
Confidence            478999999999999999999999999999888765432     2211   111   22333568999988763211   


Q ss_pred             cccHHHHhcCCCCcEEEEcCC
Q 043239          216 MINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       216 ~i~~~~l~~mk~g~ilvn~sr  236 (286)
                        -...++.|+++..+|.++.
T Consensus       271 --~~~~~~~l~~~G~iv~~G~  289 (369)
T 1uuf_A          271 --LDDFTTLLKRDGTMTLVGA  289 (369)
T ss_dssp             --HHHHHTTEEEEEEEEECCC
T ss_pred             --HHHHHHHhccCCEEEEecc
Confidence              2356677888888887764

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=95.67  E-value=0.012  Score=49.43  Aligned_cols=91  Identities=20%  Similarity=0.088  Sum_probs=59.0

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhh---cCCCEEEEeccCCh-------hh
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLA---ADSDVLIVCCALTE-------ET  213 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l---~~aDiV~~~lp~~~-------~t  213 (286)
                      ++.||++.|.|. |.||+.+|+.|.+.|++|.+.+|+.+-  ......++++++   ...|+++.+.-...       .+
T Consensus         3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~--D~~~~~~v~~~~~~~g~id~lv~nAg~~~~~~~~~~~~   80 (223)
T 3uce_A            3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTGL--DISDEKSVYHYFETIGAFDHLIVTAGSYAPAGKVVDVE   80 (223)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGTC--CTTCHHHHHHHHHHHCSEEEEEECCCCCCCCSCTTTSC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCccc--CCCCHHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCC
Confidence            367889999985 789999999999999999999987651  111122333443   46798887754220       00


Q ss_pred             ----hh----------cccHHHHhcCCCCcEEEEcCCC
Q 043239          214 ----HH----------MINKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       214 ----~~----------~i~~~~l~~mk~g~ilvn~srg  237 (286)
                          ..          .+.+..++.|+++..|||+|..
T Consensus        81 ~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~  118 (223)
T 3uce_A           81 VTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGM  118 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred             HHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecch
Confidence                00          0123455677777889999754

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=95.66  E-value=0.0052  Score=53.28  Aligned_cols=59  Identities=17%  Similarity=0.216  Sum_probs=43.9

Q ss_pred             EEEEEcC-ChHHHHHHHHhccC--CCEEEEECCCCCCCC-----Cc-------ccccCHHHhhcCCCEEEEecc
Q 043239          150 RVGIVGL-GSIGSEVAKRLVPF--GCSIAYTSRKKKPGV-----SY-------PFYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       150 ~vgIiG~-G~iG~~~A~~l~~~--g~~V~~~~r~~~~~~-----~~-------~~~~~l~e~l~~aDiV~~~lp  208 (286)
                      +|.|.|. |.+|+.+++.|...  |++|.+.+|+..+..     +.       ....++.++++++|+|+.+..
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~   74 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISS   74 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence            4778886 99999999999998  999999988765431     11       112356678889999987654

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.65  E-value=0.0099  Score=53.73  Aligned_cols=85  Identities=15%  Similarity=0.170  Sum_probs=59.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc------ccCHHHhhc-----CCCEEEEeccC
Q 043239          147 GGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF------YANVSGLAA-----DSDVLIVCCAL  209 (286)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~------~~~l~e~l~-----~aDiV~~~lp~  209 (286)
                      .|++|.|+|. |.+|..+++.++..|++|++.+++.++..     +...      ..++.+.+.     ..|+|+.+...
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~  248 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVS  248 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCc
Confidence            4789999999 89999999999999999999988765321     1110      134444433     47999888753


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 043239          210 TEETHHMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       210 ~~~t~~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                      .+.     -+..++.|+++..+|+++.
T Consensus       249 ~~~-----~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          249 EAA-----IEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             HHH-----HHHHTTSEEEEEEEEECCC
T ss_pred             HHH-----HHHHHHHHhcCCEEEEEeC
Confidence            221     2456677888888888864

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=95.65  E-value=0.044  Score=49.11  Aligned_cols=90  Identities=21%  Similarity=0.234  Sum_probs=65.6

Q ss_pred             CCCCEEEEEcC---ChHHHHHHHHhccC-CCEEEEECCCCCCCC----------C--cccccCHHHhhcCCCEEEEec--
Q 043239          146 LGGKRVGIVGL---GSIGSEVAKRLVPF-GCSIAYTSRKKKPGV----------S--YPFYANVSGLAADSDVLIVCC--  207 (286)
Q Consensus       146 l~g~~vgIiG~---G~iG~~~A~~l~~~-g~~V~~~~r~~~~~~----------~--~~~~~~l~e~l~~aDiV~~~l--  207 (286)
                      +.|.+|+++|=   |++..+++..+..+ |++|.+..+..-...          +  +....+++|+++++|+|.+..  
T Consensus       149 l~glkva~vGD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~~q  228 (306)
T 4ekn_B          149 IDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRIQ  228 (306)
T ss_dssp             STTCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCGGGCCTTCSEEEECCCC
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHhcCCCEEEEECCcccccCHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEeCCcc
Confidence            78999999997   58999999999999 999998887543211          1  223579999999999998642  


Q ss_pred             ----cCChhh-----hhcccHHHHhcCCCCcEEEEcC-CC
Q 043239          208 ----ALTEET-----HHMINKDVMTALGKEGVIINVG-RG  237 (286)
Q Consensus       208 ----p~~~~t-----~~~i~~~~l~~mk~g~ilvn~s-rg  237 (286)
                          |...+-     ...++.+.++.  ++++|.-+. ||
T Consensus       229 ~er~~~~~e~~~~~~~y~v~~~~l~~--~~ai~mH~lPRg  266 (306)
T 4ekn_B          229 KERFPDPNEYEKVKGSYKIKREYVEG--KKFIIMHPLPRV  266 (306)
T ss_dssp             GGGCCSHHHHHHHHHHHCBCHHHHTT--CCCEEECCSCCS
T ss_pred             cccCCCHHHHHHhccCcEECHHHHcC--CCCEEECCCCCC
Confidence                111111     24567888876  788888775 55

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=95.63  E-value=0.017  Score=49.22  Aligned_cols=39  Identities=18%  Similarity=0.194  Sum_probs=33.3

Q ss_pred             CCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCC
Q 043239          146 LGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPG  184 (286)
Q Consensus       146 l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~  184 (286)
                      ..++++.|.| .|.||+.+|+.|...|++|++.+|+....
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~   44 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEE   44 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhc
Confidence            5688999998 57899999999999999999999876553

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.63  E-value=0.0049  Score=55.65  Aligned_cols=85  Identities=13%  Similarity=0.215  Sum_probs=59.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc-----ccCHHHhh----cCCCEEEEeccCChh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF-----YANVSGLA----ADSDVLIVCCALTEE  212 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~-----~~~l~e~l----~~aDiV~~~lp~~~~  212 (286)
                      .|++|.|+|.|.+|..+++.++.+|++|++.+++.++..     +...     ..++.+.+    ...|+|+.++...+.
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~~  243 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPA  243 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHHH
Confidence            477999999999999999999999999999998764321     2111     12332222    468999988763221


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCC
Q 043239          213 THHMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       213 t~~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                           -...++.|+++..++.++.
T Consensus       244 -----~~~~~~~l~~~G~~v~~g~  262 (339)
T 1rjw_A          244 -----FQSAYNSIRRGGACVLVGL  262 (339)
T ss_dssp             -----HHHHHHHEEEEEEEEECCC
T ss_pred             -----HHHHHHHhhcCCEEEEecc
Confidence                 1456677888888888764

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.61  E-value=0.024  Score=51.73  Aligned_cols=85  Identities=18%  Similarity=0.191  Sum_probs=60.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-----Cccc---c----cCHHHhhc-----CCCEEEEecc
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-----SYPF---Y----ANVSGLAA-----DSDVLIVCCA  208 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-----~~~~---~----~~l~e~l~-----~aDiV~~~lp  208 (286)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.+++.++..     +...   .    .++.+.+.     ..|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g  270 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG  270 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence            47899999999999999999999999 8999988765432     2211   1    23443332     5899998875


Q ss_pred             CChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 043239          209 LTEETHHMINKDVMTALGKE-GVIINVGR  236 (286)
Q Consensus       209 ~~~~t~~~i~~~~l~~mk~g-~ilvn~sr  236 (286)
                      .. ++    -...++.++++ ..+|.++-
T Consensus       271 ~~-~~----~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          271 RI-ET----MMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             CH-HH----HHHHHHTBCTTTCEEEECCC
T ss_pred             CH-HH----HHHHHHHHhcCCCEEEEEcc
Confidence            32 21    14567888998 88888863

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=95.61  E-value=0.04  Score=48.27  Aligned_cols=61  Identities=23%  Similarity=0.236  Sum_probs=44.1

Q ss_pred             CCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCC-------------CCc-------ccccCHHHhhcCCCEEEEe
Q 043239          148 GKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPG-------------VSY-------PFYANVSGLAADSDVLIVC  206 (286)
Q Consensus       148 g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-------------~~~-------~~~~~l~e~l~~aDiV~~~  206 (286)
                      .++|.|.| .|.+|+.+++.|...|++|.+.+|+....             .+.       ....++.++++.+|+|+.+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~   83 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   83 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence            46899999 59999999999999999999999875321             111       1123455667777877766


Q ss_pred             cc
Q 043239          207 CA  208 (286)
Q Consensus       207 lp  208 (286)
                      ..
T Consensus        84 a~   85 (313)
T 1qyd_A           84 LA   85 (313)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=95.61  E-value=0.022  Score=51.81  Aligned_cols=66  Identities=21%  Similarity=0.258  Sum_probs=49.7

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCC-CEEEEECCCCCCC-------CCcc-------cccCHHHhhcCCCEEEEecc
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFG-CSIAYTSRKKKPG-------VSYP-------FYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g-~~V~~~~r~~~~~-------~~~~-------~~~~l~e~l~~aDiV~~~lp  208 (286)
                      .+++++|.|.|. |.||+.+++.|...| ++|++.+|+....       ....       ...+++++++.+|+|+.+..
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A~  108 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLAT  108 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECCC
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECCC
Confidence            578999999995 999999999999999 9999999875432       1111       11235567788999987765


Q ss_pred             CC
Q 043239          209 LT  210 (286)
Q Consensus       209 ~~  210 (286)
                      ..
T Consensus       109 ~~  110 (377)
T 2q1s_A          109 YH  110 (377)
T ss_dssp             CS
T ss_pred             cc
Confidence            43

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=95.61  E-value=0.02  Score=55.26  Aligned_cols=78  Identities=15%  Similarity=0.113  Sum_probs=56.5

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCcc--------cccCHHHh-hcCCCEEEEeccCChhhhhcccH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYP--------FYANVSGL-AADSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~--------~~~~l~e~-l~~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      +++.|+|+|.+|+.+|+.|...|++|++.+.+++......        ....|+++ ++++|.++++.+..+  ..++-.
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d~--~ni~~~  426 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQAGIDRASGIIVTTNDDS--TNIFLT  426 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHHHTTTSCSEEEECCSCHH--HHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHhcCccccCEEEEECCCch--HHHHHH
Confidence            7899999999999999999999999999998877643211        12334443 789999999987543  333334


Q ss_pred             HHHhcCCCC
Q 043239          220 DVMTALGKE  228 (286)
Q Consensus       220 ~~l~~mk~g  228 (286)
                      .....+.+.
T Consensus       427 ~~ak~l~~~  435 (565)
T 4gx0_A          427 LACRHLHSH  435 (565)
T ss_dssp             HHHHHHCSS
T ss_pred             HHHHHHCCC
Confidence            455556665

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=95.59  E-value=0.016  Score=53.08  Aligned_cols=83  Identities=13%  Similarity=0.163  Sum_probs=51.8

Q ss_pred             CEEEEEcCChHHHHHHHHhccC-CCEEEEECC-CCCC-----------CC----C---------------cccc--cCHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF-GCSIAYTSR-KKKP-----------GV----S---------------YPFY--ANVS  194 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~-g~~V~~~~r-~~~~-----------~~----~---------------~~~~--~~l~  194 (286)
                      .+|||+|+|.||+.+.|.|... .++|++.+- ....           ..    +               ....  .+.+
T Consensus        18 ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~dp~   97 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPA   97 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSCGG
T ss_pred             eEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCChH
Confidence            4899999999999999998876 577765442 2110           00    0               0011  2444


Q ss_pred             Hh-h--cCCCEEEEeccCChhhhhcccHHHHhcCCCCc--EEEEcCC
Q 043239          195 GL-A--ADSDVLIVCCALTEETHHMINKDVMTALGKEG--VIINVGR  236 (286)
Q Consensus       195 e~-l--~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~--ilvn~sr  236 (286)
                      ++ +  .++|+|+.|+|.....     +..-.+++.|+  ++|+.+.
T Consensus        98 ~i~w~~~~vDvV~eatg~~~s~-----e~a~~~l~~GakkvVId~pa  139 (354)
T 3cps_A           98 EIPWGASGAQIVCESTGVFTTE-----EKASLHLKGGAKKVIISAPP  139 (354)
T ss_dssp             GCCHHHHTCCEEEECSSSCCSH-----HHHGGGGTTTCSEEEESSCC
T ss_pred             HCCcccCCCCEEEECCCchhhH-----HHHHHHHHcCCcEEEEeCCC
Confidence            43 2  5799999998844221     22334467788  8888864

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.59  E-value=0.03  Score=51.07  Aligned_cols=85  Identities=18%  Similarity=0.149  Sum_probs=60.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-----Cccc---c----cCHHHhhc-----CCCEEEEecc
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-----SYPF---Y----ANVSGLAA-----DSDVLIVCCA  208 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-----~~~~---~----~~l~e~l~-----~aDiV~~~lp  208 (286)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++..     +...   .    .++.+.+.     ..|+|+-++.
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G  274 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  274 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCC
Confidence            57899999999999999999999999 8999988766532     2211   1    23433332     5899998875


Q ss_pred             CChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 043239          209 LTEETHHMINKDVMTALGKE-GVIINVGR  236 (286)
Q Consensus       209 ~~~~t~~~i~~~~l~~mk~g-~ilvn~sr  236 (286)
                      .. ++    -...++.++++ ..+|.++-
T Consensus       275 ~~-~~----~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          275 TA-QT----LKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             CH-HH----HHHHHHTBCTTTCEEEECCC
T ss_pred             CH-HH----HHHHHHHhhcCCCEEEEECC
Confidence            31 21    24567888998 88888764

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=95.56  E-value=0.058  Score=50.41  Aligned_cols=106  Identities=18%  Similarity=0.253  Sum_probs=71.8

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCCEEE-EECCCCC---C-------------CCCc------------ccccCH
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA-YTSRKKK---P-------------GVSY------------PFYANV  193 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~-~~~r~~~---~-------------~~~~------------~~~~~l  193 (286)
                      |.++.|+++.|.|+|++|+.+|+.|...|.+|+ +.|.+..   +             ..+.            ....+.
T Consensus       205 g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~  284 (421)
T 1v9l_A          205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNP  284 (421)
T ss_dssp             HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSST
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCc
Confidence            446899999999999999999999999999987 4555321   0             0011            111133


Q ss_pred             HHhh-cCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeE
Q 043239          194 SGLA-ADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVE  256 (286)
Q Consensus       194 ~e~l-~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~g  256 (286)
                      ++++ ..||+++-|.     +.+.|+.+..+.++- .+++--+.+.+. .+ -.+.|.+++|..
T Consensus       285 ~~~~~~~~Dil~P~A-----~~~~I~~~~a~~l~a-k~V~EgAN~p~t-~~-a~~~l~~~Gi~~  340 (421)
T 1v9l_A          285 DAIFKLDVDIFVPAA-----IENVIRGDNAGLVKA-RLVVEGANGPTT-PE-AERILYERGVVV  340 (421)
T ss_dssp             TGGGGCCCSEEEECS-----CSSCBCTTTTTTCCC-SEEECCSSSCBC-HH-HHHHHHTTTCEE
T ss_pred             hhhhcCCccEEEecC-----cCCccchhhHHHcCc-eEEEecCCCcCC-HH-HHHHHHHCCCEE
Confidence            4544 3699998775     455677777777743 577888888864 33 346777777753

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.55  E-value=0.021  Score=51.96  Aligned_cols=85  Identities=20%  Similarity=0.202  Sum_probs=61.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-----Cccc---c----cCHHHhhc-----CCCEEEEecc
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-----SYPF---Y----ANVSGLAA-----DSDVLIVCCA  208 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-----~~~~---~----~~l~e~l~-----~aDiV~~~lp  208 (286)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++..     +...   .    .++.+.+.     ..|+|+-++.
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g  269 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG  269 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCC
Confidence            57899999999999999999999999 8999988766532     2211   1    23443332     4899998876


Q ss_pred             CChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 043239          209 LTEETHHMINKDVMTALGKE-GVIINVGR  236 (286)
Q Consensus       209 ~~~~t~~~i~~~~l~~mk~g-~ilvn~sr  236 (286)
                      .. .+    -...++.++++ ..+|.++-
T Consensus       270 ~~-~~----~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          270 NV-KV----MRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             CH-HH----HHHHHHTBCTTTCEEEECSC
T ss_pred             cH-HH----HHHHHHhhccCCcEEEEEec
Confidence            32 11    24567889998 88888863

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=95.55  E-value=0.015  Score=51.54  Aligned_cols=63  Identities=24%  Similarity=0.265  Sum_probs=45.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC-----------Ccc-------cccCHHHhhcC--CCEEEE
Q 043239          147 GGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----------SYP-------FYANVSGLAAD--SDVLIV  205 (286)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----------~~~-------~~~~l~e~l~~--aDiV~~  205 (286)
                      .|++|.|.|. |.||+.+++.|...|++|.+.+|+.....           ...       ...++.++++.  .|+|+.
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   81 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYN   81 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEEE
Confidence            5789999996 99999999999999999999998765421           111       11234556665  499987


Q ss_pred             eccC
Q 043239          206 CCAL  209 (286)
Q Consensus       206 ~lp~  209 (286)
                      +...
T Consensus        82 ~A~~   85 (345)
T 2z1m_A           82 LAAQ   85 (345)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            7543

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=95.55  E-value=0.015  Score=50.99  Aligned_cols=61  Identities=16%  Similarity=0.136  Sum_probs=47.0

Q ss_pred             CCEEEEEcC-ChHHHHHHHHhccCC-CEEEEECCCCCCC-------CCc-------ccccCHHHhhcCCCEEEEecc
Q 043239          148 GKRVGIVGL-GSIGSEVAKRLVPFG-CSIAYTSRKKKPG-------VSY-------PFYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       148 g~~vgIiG~-G~iG~~~A~~l~~~g-~~V~~~~r~~~~~-------~~~-------~~~~~l~e~l~~aDiV~~~lp  208 (286)
                      +++|.|.|. |.+|+.+++.|.+.| ++|.+.+|+..+.       .+.       ....++.++++.+|+|+.+.+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            578999997 999999999999888 9999998876542       111       112356678899999988764

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=95.54  E-value=0.014  Score=50.16  Aligned_cols=93  Identities=16%  Similarity=0.193  Sum_probs=58.8

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCCCc------ccccCHHHhhc-------CCCEEEEeccCC-
Q 043239          146 LGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY------PFYANVSGLAA-------DSDVLIVCCALT-  210 (286)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~------~~~~~l~e~l~-------~aDiV~~~lp~~-  210 (286)
                      .-++++.|.|. |.||+.+|+.|...|++|++.+|+.......      ....+++++++       ..|+++.+.... 
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~~Ag~~~   99 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWS   99 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSSEEEECSCSSHHHHHHHHHHHHTTTCCEEEEEECCCCCC
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccccceEEEeCCHHHHHHHHHHHHHHcCCCCEEEECCccCC
Confidence            34789999985 7899999999999999999999887654321      11123333333       359888775421 


Q ss_pred             ------hhh----hhc----------ccHHHHhcCCCCcEEEEcCCCc
Q 043239          211 ------EET----HHM----------INKDVMTALGKEGVIINVGRGA  238 (286)
Q Consensus       211 ------~~t----~~~----------i~~~~l~~mk~g~ilvn~srg~  238 (286)
                            +.+    ...          +.+..++.|+++..||++|...
T Consensus       100 ~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  147 (251)
T 3orf_A          100 GGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASA  147 (251)
T ss_dssp             CBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             CCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechh
Confidence                  111    011          1234556677777889987643

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.50  E-value=0.0065  Score=54.98  Aligned_cols=85  Identities=16%  Similarity=0.165  Sum_probs=59.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-----Cccc-----ccCHHHhh------cCCCEEEEeccC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-----SYPF-----YANVSGLA------ADSDVLIVCCAL  209 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-----~~~~-----~~~l~e~l------~~aDiV~~~lp~  209 (286)
                      .|++|.|+|.|.+|..+++.++.+|+ +|++.+++.++..     +...     ..++.+.+      ...|+|+.++..
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~  246 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA  246 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            68899999999999999999999999 8999998764321     2110     12333322      158999988763


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 043239          210 TEETHHMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       210 ~~~t~~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                      .+.     -...++.++++..++.++.
T Consensus       247 ~~~-----~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          247 PKA-----LEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             HHH-----HHHHHHHEEEEEEEEECCC
T ss_pred             HHH-----HHHHHHHHhcCCEEEEEcc
Confidence            221     1345677788888888764

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=95.50  E-value=0.012  Score=53.12  Aligned_cols=61  Identities=15%  Similarity=0.173  Sum_probs=45.9

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEE-EECCCCC-CCC---------C--cccccCHHHhhcC--CCEEEEeccCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIA-YTSRKKK-PGV---------S--YPFYANVSGLAAD--SDVLIVCCALT  210 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~-~~~r~~~-~~~---------~--~~~~~~l~e~l~~--aDiV~~~lp~~  210 (286)
                      .+|||||+|.+|+..++.+ .-+++|+ ++|++.+ ...         +  ...+.++++++++  .|+|++++|..
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~   78 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFS   78 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHH
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcc
Confidence            4899999999999888877 5577875 6787763 221         2  2356899999864  89999998843

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=95.49  E-value=0.051  Score=51.61  Aligned_cols=98  Identities=17%  Similarity=0.241  Sum_probs=68.5

Q ss_pred             cCCCCEEEEEcCC----------hHHHHHHHHhccCCCEEEEECCCCCCCC---C-------------cccccCHHHhhc
Q 043239          145 TLGGKRVGIVGLG----------SIGSEVAKRLVPFGCSIAYTSRKKKPGV---S-------------YPFYANVSGLAA  198 (286)
Q Consensus       145 ~l~g~~vgIiG~G----------~iG~~~A~~l~~~g~~V~~~~r~~~~~~---~-------------~~~~~~l~e~l~  198 (286)
                      .+.|++|+|+|+.          .-...+++.|...|.+|.+||+......   .             .....++.+.++
T Consensus       332 ~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (481)
T 2o3j_A          332 TVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAAAR  411 (481)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSHHHHHT
T ss_pred             ccCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHHHHhhhccccccCceeecCCHHHHHc
Confidence            4689999999974          4788899999999999999999753210   0             112357788999


Q ss_pred             CCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHH
Q 043239          199 DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKEL  245 (286)
Q Consensus       199 ~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al  245 (286)
                      ++|.|++++.- ++-+.+--....+.|+...+++|. |+ +.|.+.+
T Consensus       412 ~ad~~vi~t~~-~~f~~~~~~~~~~~~~~~~~i~D~-r~-~~~~~~~  455 (481)
T 2o3j_A          412 GAHAIVVLTEW-DEFVELNYSQIHNDMQHPAAIFDG-RL-ILDQKAL  455 (481)
T ss_dssp             TCSEEEECSCC-GGGTTSCHHHHHHHSCSSCEEEES-SS-CSCHHHH
T ss_pred             CCCEEEEcCCc-HHhhccCHHHHHHhcCCCCEEEEC-CC-CCCHHHH
Confidence            99999998763 333333223455568776688987 54 3565443

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.49  E-value=0.016  Score=52.48  Aligned_cols=86  Identities=19%  Similarity=0.213  Sum_probs=59.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc---c---cC----HHHhh-----cCCCEEEEe
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF---Y---AN----VSGLA-----ADSDVLIVC  206 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~---~---~~----l~e~l-----~~aDiV~~~  206 (286)
                      .|++|.|+|.|.+|...++.++.+|++|++.+++.++..     +...   .   .+    +.+..     ...|+|+-+
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~  247 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC  247 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEEC
Confidence            478999999999999999999999999988887654321     2110   1   12    22222     258999988


Q ss_pred             ccCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 043239          207 CALTEETHHMINKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       207 lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg  237 (286)
                      +... .+    -...+..++++..+|.++.+
T Consensus       248 ~g~~-~~----~~~~~~~l~~~G~iv~~G~~  273 (352)
T 1e3j_A          248 SGNE-KC----ITIGINITRTGGTLMLVGMG  273 (352)
T ss_dssp             SCCH-HH----HHHHHHHSCTTCEEEECSCC
T ss_pred             CCCH-HH----HHHHHHHHhcCCEEEEEecC
Confidence            7632 11    14567788999999988743

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=95.48  E-value=0.013  Score=52.86  Aligned_cols=64  Identities=20%  Similarity=0.183  Sum_probs=47.5

Q ss_pred             cCCCCEEEEEc-CChHHHHHHHHhccC-CCEEEEECCCCCCCC------Cc-------c-cccCHHHhhcCCCEEEEecc
Q 043239          145 TLGGKRVGIVG-LGSIGSEVAKRLVPF-GCSIAYTSRKKKPGV------SY-------P-FYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       145 ~l~g~~vgIiG-~G~iG~~~A~~l~~~-g~~V~~~~r~~~~~~------~~-------~-~~~~l~e~l~~aDiV~~~lp  208 (286)
                      .+.+++|.|.| .|.||+.+++.|... |++|++.+|+.....      ..       . ...++.++++++|+|+.+..
T Consensus        21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~  100 (372)
T 3slg_A           21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLVA  100 (372)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECBC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcCc
Confidence            46789999999 699999999999987 999999998765532      11       1 12235567889999987654

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=95.47  E-value=0.023  Score=51.66  Aligned_cols=29  Identities=28%  Similarity=0.458  Sum_probs=24.2

Q ss_pred             CEEEEEcCChHHHHHHHHhccC-CCEEEEE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF-GCSIAYT  177 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~-g~~V~~~  177 (286)
                      .+|||+|+|.||+.+++.|... +++|.+.
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI   33 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAV   33 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEE
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEE
Confidence            4899999999999999998765 5676644

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=95.47  E-value=0.033  Score=48.58  Aligned_cols=39  Identities=31%  Similarity=0.418  Sum_probs=33.7

Q ss_pred             cccCCCCEEEEEcC-Ch--HHHHHHHHhccCCCEEEEECCCC
Q 043239          143 GSTLGGKRVGIVGL-GS--IGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       143 ~~~l~g~~vgIiG~-G~--iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      ...+.|+++.|.|. |.  ||.++|+.|...|++|++.+|+.
T Consensus        21 M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           21 MGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             -CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             ccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            34689999999996 45  99999999999999999998875

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=95.46  E-value=0.018  Score=54.95  Aligned_cols=62  Identities=23%  Similarity=0.210  Sum_probs=48.3

Q ss_pred             CCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCCCc--ccccCHHHhhcCCCEEEEeccC
Q 043239          148 GKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY--PFYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       148 g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~--~~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      +++|.|.| .|.||+.+++.|...|++|++.+|+.......  .....+.+.+.++|+|+.+...
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~~d~~~~~~~~l~~~D~Vih~A~~  211 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRFWDPLNPASDLLDGADVLVHLAGE  211 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEECCTTSCCTTTTTTCSEEEECCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccceeecccchhHHhcCCCCEEEECCCC
Confidence            68999999 69999999999999999999999987654321  1123455678899999876543

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.45  E-value=0.015  Score=49.26  Aligned_cols=38  Identities=16%  Similarity=0.249  Sum_probs=33.0

Q ss_pred             CCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCC
Q 043239          147 GGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPG  184 (286)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~  184 (286)
                      .|+++.|.| .|.||+.+|+.|...|++|++.+|+.+..
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~   40 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQ   40 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCcccc
Confidence            578899997 58999999999999999999999876653

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=95.43  E-value=0.021  Score=50.99  Aligned_cols=63  Identities=16%  Similarity=0.153  Sum_probs=48.2

Q ss_pred             CCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCC----------------CCc-------ccccCHHHhhcCCC
Q 043239          146 LGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPG----------------VSY-------PFYANVSGLAADSD  201 (286)
Q Consensus       146 l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~----------------~~~-------~~~~~l~e~l~~aD  201 (286)
                      +.+++|.|.| .|.||+.+++.|...|++|++.+|+....                ...       ....++.++++++|
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d  102 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVD  102 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCC
Confidence            5688999999 59999999999999999999999865432                111       11234567788999


Q ss_pred             EEEEecc
Q 043239          202 VLIVCCA  208 (286)
Q Consensus       202 iV~~~lp  208 (286)
                      +|+.+..
T Consensus       103 ~Vih~A~  109 (351)
T 3ruf_A          103 HVLHQAA  109 (351)
T ss_dssp             EEEECCC
T ss_pred             EEEECCc
Confidence            9987764

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=95.41  E-value=0.011  Score=53.67  Aligned_cols=83  Identities=13%  Similarity=0.055  Sum_probs=49.5

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCC---CEEEEEC-CCCC-CCC---Ccc-cccCHH-HhhcCCCEEEEeccCChhhhhcc
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFG---CSIAYTS-RKKK-PGV---SYP-FYANVS-GLAADSDVLIVCCALTEETHHMI  217 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g---~~V~~~~-r~~~-~~~---~~~-~~~~l~-e~l~~aDiV~~~lp~~~~t~~~i  217 (286)
                      ++|+|+| +|.+|+.+.+.|...+   +++.... ++.. +..   +.. ...+++ +.+.++|+|+.|+|... +....
T Consensus         4 ~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~~~~~~vDvVf~a~g~~~-s~~~a   82 (336)
T 2r00_A            4 FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGEL-SAKWA   82 (336)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGGCCGGGCSEEEECSCHHH-HHHHH
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCChHHhcCCCEEEECCCchH-HHHHH
Confidence            6899999 9999999999998763   4665443 3221 110   100 111111 24578999999988432 22221


Q ss_pred             cHHHHhcCCCCcEEEEcCC
Q 043239          218 NKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       218 ~~~~l~~mk~g~ilvn~sr  236 (286)
                       ..   +++.|+.+||.|.
T Consensus        83 -~~---~~~~G~~vId~s~   97 (336)
T 2r00_A           83 -PI---AAEAGVVVIDNTS   97 (336)
T ss_dssp             -HH---HHHTTCEEEECSS
T ss_pred             -HH---HHHcCCEEEEcCC
Confidence             12   2356788888763

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=95.40  E-value=0.0097  Score=54.02  Aligned_cols=29  Identities=28%  Similarity=0.366  Sum_probs=24.0

Q ss_pred             CEEEEEcCChHHHHHHHHhccC---CCEEEEE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF---GCSIAYT  177 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~---g~~V~~~  177 (286)
                      .+|||+|+|.||+.+.|.|...   .++|.+.
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivai   32 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAI   32 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEE
Confidence            3799999999999999998765   4687644

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=95.40  E-value=0.035  Score=50.08  Aligned_cols=61  Identities=20%  Similarity=0.147  Sum_probs=45.8

Q ss_pred             CCEEEEEcC-ChHHHHHHHHhccCCC-------EEEEECCC----CCCC-----------CC----cccccCHHHhhcCC
Q 043239          148 GKRVGIVGL-GSIGSEVAKRLVPFGC-------SIAYTSRK----KKPG-----------VS----YPFYANVSGLAADS  200 (286)
Q Consensus       148 g~~vgIiG~-G~iG~~~A~~l~~~g~-------~V~~~~r~----~~~~-----------~~----~~~~~~l~e~l~~a  200 (286)
                      .++|+|+|. |.+|..++..|...|+       +|..+|+.    .++.           ..    .....++.+.+++|
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~a   84 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDA   84 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCC
Confidence            468999997 9999999999987775       78899987    2111           01    11235788999999


Q ss_pred             CEEEEecc
Q 043239          201 DVLIVCCA  208 (286)
Q Consensus       201 DiV~~~lp  208 (286)
                      |+|+.+..
T Consensus        85 D~Vi~~ag   92 (329)
T 1b8p_A           85 DVALLVGA   92 (329)
T ss_dssp             SEEEECCC
T ss_pred             CEEEEeCC
Confidence            99988754

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=95.36  E-value=0.02  Score=51.15  Aligned_cols=109  Identities=15%  Similarity=0.267  Sum_probs=63.5

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCCC--EEEEECC--CCCCCCC--------------cccccCHHHhhcCCCEEEEeccC
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFGC--SIAYTSR--KKKPGVS--------------YPFYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g~--~V~~~~r--~~~~~~~--------------~~~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      ++|+|+| .|.+|..++..|...|.  ++..+|+  ..++..+              .....+..+.+++||+|+++...
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag~   80 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI   80 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCCC
Confidence            4899999 99999999999987665  6888888  4422110              00000225678999999988653


Q ss_pred             Chh---hh-hc------ccHHH---HhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCeeEE
Q 043239          210 TEE---TH-HM------INKDV---MTALGKEGVIINVGRGALIDEKELVHF--LVRGSLVEL  257 (286)
Q Consensus       210 ~~~---t~-~~------i~~~~---l~~mk~g~ilvn~srg~~vd~~al~~a--l~~~~i~ga  257 (286)
                      ...   ++ .+      +-++.   +....+.+++++.+..-=+....+.+.  +...++.|.
T Consensus        81 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~~~~~~~p~~rviG~  143 (303)
T 1o6z_A           81 PRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHLYEAGDRSREQVIGF  143 (303)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHHHHHHSSSCGGGEEEC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHcCCCHHHeeec
Confidence            221   10 00      11122   223367889998754433333444343  344456555

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.35  E-value=0.01  Score=51.48  Aligned_cols=61  Identities=20%  Similarity=0.112  Sum_probs=45.7

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc----cccCHHHhhcCCCEEEEeccCC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP----FYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~----~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      .++|.|.|.|.+|+.+++.|.+.|++|.+.+|+.....     +..    -..+++  +.++|+|+.+....
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~~   74 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAPD   74 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCCB
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCcc
Confidence            37899999999999999999999999999998765321     111    112333  77899998876543

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=95.34  E-value=0.014  Score=53.10  Aligned_cols=29  Identities=28%  Similarity=0.454  Sum_probs=24.1

Q ss_pred             CEEEEEcCChHHHHHHHHhccC-CCEEEEE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF-GCSIAYT  177 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~-g~~V~~~  177 (286)
                      .+|||+|+|.||+.+.|.|... .++|.+.
T Consensus         2 ikVgI~G~G~iGr~l~R~l~~~~~veivai   31 (334)
T 3cmc_O            2 VKVGINGFGRIGRNVFRAALKNPDIEVVAV   31 (334)
T ss_dssp             EEEEEESCSHHHHHHHHHHTTCTTEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHhCCCCeEEEEE
Confidence            3799999999999999998875 4677644

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=95.31  E-value=0.02  Score=55.91  Aligned_cols=38  Identities=21%  Similarity=0.549  Sum_probs=33.8

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKK  181 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~  181 (286)
                      ..|++++|.|||+|.+|..+|+.|...|. +++++|...
T Consensus       322 ekL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          322 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            36899999999999999999999999998 788888644

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=95.30  E-value=0.014  Score=48.30  Aligned_cols=62  Identities=19%  Similarity=0.185  Sum_probs=44.6

Q ss_pred             CCCEEEEEc-CChHHHHHHHHhccCCC--EEEEECCCCCCCC-Ccc-cccC------HHHhhcCCCEEEEeccCC
Q 043239          147 GGKRVGIVG-LGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV-SYP-FYAN------VSGLAADSDVLIVCCALT  210 (286)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~-~~~-~~~~------l~e~l~~aDiV~~~lp~~  210 (286)
                      .+++|.|.| .|.+|+.+++.|...|.  +|.+.+|+..... ... ...+      +.+++  +|+|+.+....
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~--~d~vi~~a~~~   76 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGS--IDTAFCCLGTT   76 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCCSC--CSEEEECCCCC
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcccCCCceEEeccccCHHHHHHhh--hcEEEECeeec
Confidence            467999998 79999999999999998  9999988765421 111 1122      33334  89998887654

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=95.30  E-value=0.023  Score=50.59  Aligned_cols=66  Identities=26%  Similarity=0.205  Sum_probs=45.8

Q ss_pred             ccCCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCC-------CCcc-------cccCHHHhhcC--CCEEEEe
Q 043239          144 STLGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPG-------VSYP-------FYANVSGLAAD--SDVLIVC  206 (286)
Q Consensus       144 ~~l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-------~~~~-------~~~~l~e~l~~--aDiV~~~  206 (286)
                      ..+.+++|.|.| .|.||+.+++.|...|++|++.+|+....       ....       ...++++++++  +|+|+.+
T Consensus        17 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~   96 (333)
T 2q1w_A           17 RGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHT   96 (333)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             ecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEEC
Confidence            347789999998 69999999999999999999998865321       1111       11235566777  9999877


Q ss_pred             ccC
Q 043239          207 CAL  209 (286)
Q Consensus       207 lp~  209 (286)
                      ...
T Consensus        97 A~~   99 (333)
T 2q1w_A           97 AAS   99 (333)
T ss_dssp             CCC
T ss_pred             cee
Confidence            543

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.30  E-value=0.025  Score=51.70  Aligned_cols=85  Identities=21%  Similarity=0.235  Sum_probs=60.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-----Cccc-------ccCHHHhhc-----CCCEEEEecc
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-----SYPF-------YANVSGLAA-----DSDVLIVCCA  208 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-----~~~~-------~~~l~e~l~-----~aDiV~~~lp  208 (286)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.+++.++..     +...       ..++.+.+.     ..|+|+-++.
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g  272 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIG  272 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCC
Confidence            57899999999999999999999999 8999998776532     2211       123333332     4899998876


Q ss_pred             CChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 043239          209 LTEETHHMINKDVMTALGKE-GVIINVGR  236 (286)
Q Consensus       209 ~~~~t~~~i~~~~l~~mk~g-~ilvn~sr  236 (286)
                      .. ++    -...+..++++ ..++.++-
T Consensus       273 ~~-~~----~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          273 NV-SV----MRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             CH-HH----HHHHHHTBCTTTCEEEECSC
T ss_pred             CH-HH----HHHHHHHhhccCCEEEEEcc
Confidence            32 21    24567788986 88888763

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=95.28  E-value=0.01  Score=53.47  Aligned_cols=79  Identities=10%  Similarity=0.020  Sum_probs=54.0

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----Ccc-------cccCHHHh-hcCCCEEEEeccCChhhhh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----SYP-------FYANVSGL-AADSDVLIVCCALTEETHH  215 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----~~~-------~~~~l~e~-l~~aDiV~~~lp~~~~t~~  215 (286)
                      .+++.|+|+|.+|+.+++.|...|. |++.+++++...    +..       ....++++ +++||.++++++..+.  .
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~~--n  191 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSE--T  191 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHHHHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHHH--H
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhhHHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccHH--H
Confidence            5689999999999999999999999 999998775432    111       11234444 7889999998875432  2


Q ss_pred             cccHHHHhcCCCCc
Q 043239          216 MINKDVMTALGKEG  229 (286)
Q Consensus       216 ~i~~~~l~~mk~g~  229 (286)
                      +.-......+.+..
T Consensus       192 ~~~~~~ar~~~~~~  205 (336)
T 1lnq_A          192 IHCILGIRKIDESV  205 (336)
T ss_dssp             HHHHHHHHTTCTTS
T ss_pred             HHHHHHHHHHCCCC
Confidence            33334555566653

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=95.28  E-value=0.018  Score=53.26  Aligned_cols=87  Identities=15%  Similarity=0.198  Sum_probs=59.0

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-----Cccc-----ccCHHH----hh--cCCCEEEEecc
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-----SYPF-----YANVSG----LA--ADSDVLIVCCA  208 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-----~~~~-----~~~l~e----~l--~~aDiV~~~lp  208 (286)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++..     +...     ..++.+    +.  ...|+|+-++.
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g  291 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATG  291 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCC
Confidence            358899999999999999999999999 8999987765421     2111     123332    22  25899999876


Q ss_pred             CChhhhhcccHHHHhcC----CCCcEEEEcCC
Q 043239          209 LTEETHHMINKDVMTAL----GKEGVIINVGR  236 (286)
Q Consensus       209 ~~~~t~~~i~~~~l~~m----k~g~ilvn~sr  236 (286)
                      ....+.    ...++.+    +++..++.++-
T Consensus       292 ~~~~~~----~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          292 VPQLVW----PQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             CHHHHH----HHHHHHHHHCSCCCCEEEECSC
T ss_pred             CcHHHH----HHHHHHHHhccCCCcEEEEeCC
Confidence            432222    2233344    89998888863

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=95.28  E-value=0.018  Score=49.55  Aligned_cols=61  Identities=18%  Similarity=0.234  Sum_probs=46.5

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC--C-------cccccCHHHhhcCCCEEEEeccC
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV--S-------YPFYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--~-------~~~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      ++|.|.|. |.||+.+++.|...|++|++.+|+.....  +       .....++.++++..|+|+.+...
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~   73 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEEIVACDLADAQAVHDLVKDCDGIIHLGGV   73 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCCCTTEEECCCCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCccccCCCccEEEccCCCHHHHHHHHcCCCEEEECCcC
Confidence            58999996 99999999999999999999998765321  1       11123456788899999887643

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=95.26  E-value=0.028  Score=51.14  Aligned_cols=63  Identities=22%  Similarity=0.247  Sum_probs=48.1

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc-------cccCHHHhhcCCCEEEEecc
Q 043239          146 LGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP-------FYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~-------~~~~l~e~l~~aDiV~~~lp  208 (286)
                      ..+++|.|.|. |.||+.+++.|...|++|++.+|+.....     ...       ...++.++++.+|+|+.+..
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~  102 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAA  102 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECce
Confidence            36789999997 99999999999999999999988765432     111       12345677889999987754

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=95.26  E-value=0.023  Score=48.08  Aligned_cols=60  Identities=18%  Similarity=0.215  Sum_probs=43.7

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCCCcc-----cccCHHHhhc----CCCEEEEecc
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYP-----FYANVSGLAA----DSDVLIVCCA  208 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~-----~~~~l~e~l~----~aDiV~~~lp  208 (286)
                      +++.|.|. |.||+.+++.|...|++|++.+|+.+......     ...+++++++    ..|+|+.+..
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag   71 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCCAG   71 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccccccCCcccHHHHHHHHHHcCCCccEEEECCC
Confidence            47888985 99999999999999999999998765432111     1233445554    7899988754

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.25  E-value=0.0035  Score=51.85  Aligned_cols=85  Identities=21%  Similarity=0.274  Sum_probs=57.6

Q ss_pred             CCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCC-----CCccc-----ccCHHH----hh--cCCCEEEEeccC
Q 043239          147 GGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPF-----YANVSG----LA--ADSDVLIVCCAL  209 (286)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~~~~~-----~~~l~e----~l--~~aDiV~~~lp~  209 (286)
                      .|++|.|+| .|.+|..+++.++..|++|++.+++.++.     .+...     ..+..+    ..  ...|+++.+.. 
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g-  116 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLA-  116 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCC-
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECCc-
Confidence            578999999 69999999999999999999988765432     11110     012212    22  14788887763 


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 043239          210 TEETHHMINKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       210 ~~~t~~~i~~~~l~~mk~g~ilvn~srg  237 (286)
                      . .    .....+..|+++..+|+++..
T Consensus       117 ~-~----~~~~~~~~l~~~G~~v~~g~~  139 (198)
T 1pqw_A          117 G-E----AIQRGVQILAPGGRFIELGKK  139 (198)
T ss_dssp             T-H----HHHHHHHTEEEEEEEEECSCG
T ss_pred             h-H----HHHHHHHHhccCCEEEEEcCC
Confidence            1 1    124567788888888888754

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=95.23  E-value=0.012  Score=52.09  Aligned_cols=83  Identities=12%  Similarity=0.207  Sum_probs=59.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc---c---cCHHHhhcCCCEEEEeccCChhhh
Q 043239          147 GGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF---Y---ANVSGLAADSDVLIVCCALTEETH  214 (286)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~---~---~~l~e~l~~aDiV~~~lp~~~~t~  214 (286)
                      .|++|.|+|. |.+|..+++.++..|++|++.+++.++..     +...   .   .++.+.+...|+|+. +.. +   
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~---  199 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-K---  199 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-T---
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-H---
Confidence            4789999998 99999999999999999999988765532     2221   1   123333467899988 653 1   


Q ss_pred             hcccHHHHhcCCCCcEEEEcCC
Q 043239          215 HMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                        .-...++.|+++..++.++.
T Consensus       200 --~~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          200 --EVEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             --THHHHHTTEEEEEEEEEC--
T ss_pred             --HHHHHHHhhccCCEEEEEeC
Confidence              12567788889888888863

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=95.23  E-value=0.073  Score=46.10  Aligned_cols=50  Identities=20%  Similarity=0.383  Sum_probs=37.7

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccC-CCEEE-EECCCCCCCCCcccccCHHHhhc-CCCEEEEecc
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPF-GCSIA-YTSRKKKPGVSYPFYANVSGLAA-DSDVLIVCCA  208 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~-g~~V~-~~~r~~~~~~~~~~~~~l~e~l~-~aDiV~~~lp  208 (286)
                      ++|+|+|+ |.||+.+++.+... ++++. ++++.          .++++++. .+|+|+-+.+
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~----------~dl~~~~~~~~DvvIDfT~   54 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG----------DPLSLLTDGNTEVVIDFTH   54 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT----------CCTHHHHHTTCCEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC----------CCHHHHhccCCcEEEEccC
Confidence            47999995 99999999998755 88876 55553          35666665 7998885543

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=95.23  E-value=0.032  Score=52.50  Aligned_cols=105  Identities=15%  Similarity=0.197  Sum_probs=70.7

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCCEEE-EECCCCC----------------------CC---------CCcccc
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA-YTSRKKK----------------------PG---------VSYPFY  190 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~-~~~r~~~----------------------~~---------~~~~~~  190 (286)
                      +.++.|+||.|-|+|++|...|+.|...|.+|+ +.|.+..                      ..         .+.. .
T Consensus       234 g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~iyd~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~~~a~-~  312 (456)
T 3r3j_A          234 NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLKEYLKYSKTAK-Y  312 (456)
T ss_dssp             TCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEECSSCEEECTTCCCHHHHHHHHHHHHTSCCCGGGGGGTCSSCE-E
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHHHhcCcchhhhhhcCCCce-E
Confidence            457899999999999999999999999999975 5553310                      00         0111 1


Q ss_pred             cCHHHhh-cCCCEEEEeccCChhhhhcccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          191 ANVSGLA-ADSDVLIVCCALTEETHHMINKDVMTALG--KEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       191 ~~l~e~l-~~aDiV~~~lp~~~~t~~~i~~~~l~~mk--~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      .+.++++ ..|||++=|.     +.+.|+.+..+.+.  .=.+++-.+.+.+..+.  .+.|.+++|.
T Consensus       313 v~~~~i~~~~~DI~iPcA-----~~~~I~~~na~~l~~~~ak~V~EgAN~p~T~eA--~~iL~~rGI~  373 (456)
T 3r3j_A          313 FENQKPWNIPCDIAFPCA-----TQNEINENDADLFIQNKCKMIVEGANMPTHIKA--LHKLKQNNII  373 (456)
T ss_dssp             ECSCCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHHTCCEEECCSSSCBCTTH--HHHHHTTTCE
T ss_pred             eCCccccccCccEEEeCC-----CccchhhHHHHHHHhcCCeEEEecCCCCCCHHH--HHHHHHCCCE
Confidence            1223333 4599887764     46688888777762  23477788888865443  4678777774

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=95.22  E-value=0.015  Score=49.06  Aligned_cols=64  Identities=16%  Similarity=0.039  Sum_probs=47.9

Q ss_pred             CCCCEEEEEc-CChHHHHHHHHhccC--CCEEEEECCCCCCC----CC-------cccccCHHHhhcCCCEEEEeccC
Q 043239          146 LGGKRVGIVG-LGSIGSEVAKRLVPF--GCSIAYTSRKKKPG----VS-------YPFYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       146 l~g~~vgIiG-~G~iG~~~A~~l~~~--g~~V~~~~r~~~~~----~~-------~~~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      ..+++|.|.| .|.||+.+++.|...  |++|.+.+|+..+.    ..       .....++.+++++.|+|+.+...
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   79 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSA   79 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEEEeccc
Confidence            3578999998 699999999999998  89999998865321    11       11224566788899999887653

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=95.22  E-value=0.058  Score=47.53  Aligned_cols=42  Identities=24%  Similarity=0.218  Sum_probs=36.1

Q ss_pred             CCcccCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          141 PLGSTLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       141 ~~~~~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      .+..++.||++.|.|. |.||.++|+.|...|++|++.+|+..
T Consensus        21 ~m~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~   63 (299)
T 3t7c_A           21 SMAGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQ   63 (299)
T ss_dssp             -CCCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSC
T ss_pred             ccccccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccc
Confidence            4556799999999985 68999999999999999999988754

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=95.22  E-value=0.023  Score=49.95  Aligned_cols=61  Identities=20%  Similarity=0.254  Sum_probs=39.9

Q ss_pred             CCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC----CcccccCHHHhhcC--CCEEEEecc
Q 043239          148 GKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV----SYPFYANVSGLAAD--SDVLIVCCA  208 (286)
Q Consensus       148 g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----~~~~~~~l~e~l~~--aDiV~~~lp  208 (286)
                      +++|.|.|. |.||+.+++.|...|++|.+.+|+.....    ......++.++++.  +|+|+.+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~   69 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAA   69 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC------------------CHHHHHHHCCSEEEECC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEecCCCHHHHHHHHHhhCCCEEEECCc
Confidence            579999996 99999999999999999999997654311    11123455666764  899987754

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.20  E-value=0.057  Score=51.30  Aligned_cols=106  Identities=18%  Similarity=0.168  Sum_probs=71.1

Q ss_pred             cCCCCEEEEEcCCh----------HHHHHHHHhccCCCEEEEECCCCCCCC----------------CcccccCHHHhhc
Q 043239          145 TLGGKRVGIVGLGS----------IGSEVAKRLVPFGCSIAYTSRKKKPGV----------------SYPFYANVSGLAA  198 (286)
Q Consensus       145 ~l~g~~vgIiG~G~----------iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~~~~~~~l~e~l~  198 (286)
                      .+.|++|+|+|+--          -...+++.|...|.+|.+||+......                ......++.+.++
T Consensus       325 ~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (478)
T 2y0c_A          325 DLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVAQEEARRVIALDLADHPSWLERLSFVDDEAQAAR  404 (478)
T ss_dssp             CCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHTTTCHHHHTTEEECSSHHHHTT
T ss_pred             cCCCCEEEEEecccCCCCCccccChHHHHHHHHHHCCCEEEEECCCccHHHHHhhccccccccccccceeecCCHHHHHh
Confidence            57899999999753          678899999999999999999753210                1223457888999


Q ss_pred             CCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEE
Q 043239          199 DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELV  258 (286)
Q Consensus       199 ~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~  258 (286)
                      ++|+|+++..- ++-+.+--+...+.|+. .+|+|. |+ +.+.+    .+++..+...+
T Consensus       405 ~ad~~vi~t~~-~~f~~~~~~~~~~~~~~-~~i~D~-r~-~~~~~----~~~~~g~~y~~  456 (478)
T 2y0c_A          405 DADALVIVTEW-KIFKSPDFVALGRLWKT-PVIFDG-RN-LYEPE----TMSEQGIEYHP  456 (478)
T ss_dssp             TCSEEEECSCC-GGGGSCCHHHHHTTCSS-CEEEES-SC-CSCHH----HHHHTTCEEEC
T ss_pred             CCCEEEEecCC-hHhhccCHHHHHhhcCC-CEEEEC-CC-CCCHH----HHHhcCCEEEE
Confidence            99999998763 33333222334455654 789998 44 34544    33444554443

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=95.18  E-value=0.029  Score=54.70  Aligned_cols=37  Identities=22%  Similarity=0.563  Sum_probs=33.2

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRK  180 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~  180 (286)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++.++|..
T Consensus       323 ~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D  360 (598)
T 3vh1_A          323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG  360 (598)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            56899999999999999999999999998 78888643

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=95.16  E-value=0.027  Score=50.00  Aligned_cols=61  Identities=15%  Similarity=0.165  Sum_probs=45.3

Q ss_pred             CCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc-------cccCHHHhhcCCCEEEEecc
Q 043239          148 GKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP-------FYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       148 g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~-------~~~~l~e~l~~aDiV~~~lp  208 (286)
                      .++|.|.| .|.||+.+++.|...|++|.+.+|+.....     +..       ...++.++++.+|+|+.+..
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~   86 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAG   86 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            35899999 599999999999999999999988765421     111       12345677889999987764

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=95.11  E-value=0.0076  Score=53.79  Aligned_cols=96  Identities=21%  Similarity=0.209  Sum_probs=58.2

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC-------------Cc--c-cccCHHHhhcCCCEEEEecc--
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV-------------SY--P-FYANVSGLAADSDVLIVCCA--  208 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~-------------~~--~-~~~~l~e~l~~aDiV~~~lp--  208 (286)
                      ++|+|||.|.+|+++|..|...+.  ++..+|.......             ..  . ...+-.+.+++||+|+++.-  
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitAG~p   80 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA   80 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEecCCC
Confidence            589999999999999998876554  7999998653221             00  0 11222357899999998753  


Q ss_pred             CChh-hhh-cc--cH----H---HHhcCCCCcEEEEcCCCcccCHHHHH
Q 043239          209 LTEE-THH-MI--NK----D---VMTALGKEGVIINVGRGALIDEKELV  246 (286)
Q Consensus       209 ~~~~-t~~-~i--~~----~---~l~~mk~g~ilvn~srg~~vd~~al~  246 (286)
                      -.|. ++. ++  |.    +   .+..-.|.++++.++  .++|.-..+
T Consensus        81 rkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvs--NPvd~~t~i  127 (294)
T 2x0j_A           81 RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVMTYI  127 (294)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHHHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEec--CcchhhHHh
Confidence            2221 111 11  11    1   222336778888885  445554444

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=95.10  E-value=0.021  Score=51.78  Aligned_cols=84  Identities=13%  Similarity=0.129  Sum_probs=51.4

Q ss_pred             CEEEEEcCChHHHHHHHHhccC-CCEEEE-ECC-C-CC---------CCCC-c--------------------ccccCHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF-GCSIAY-TSR-K-KK---------PGVS-Y--------------------PFYANVS  194 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~-g~~V~~-~~r-~-~~---------~~~~-~--------------------~~~~~l~  194 (286)
                      .+|||+|+|.||+.+++.+... +++|.+ .++ . .+         ...+ +                    ....+++
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~~   83 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPS   83 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCHH
Confidence            4899999999999999998753 578764 443 1 11         0000 0                    0012555


Q ss_pred             Hh-h--cCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 043239          195 GL-A--ADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       195 e~-l--~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg  237 (286)
                      ++ +  .++|+|+.|+|.....     +..-.+++.|+..|+++-.
T Consensus        84 ~l~~~~~~vDvV~eatg~~~~~-----e~a~~~l~aGak~V~iSap  124 (335)
T 1u8f_O           84 KIKWGDAGAEYVVESTGVFTTM-----EKAGAHLQGGAKRVIISAP  124 (335)
T ss_dssp             GCCTTTTTCCEEEECSSSCCSH-----HHHGGGGGGTCSEEEESSC
T ss_pred             HCccccCCCCEEEECCCchhhH-----HHHHHHHhCCCeEEEeccC
Confidence            65 2  5799999998854221     1233446678766777644

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=95.10  E-value=0.0082  Score=54.60  Aligned_cols=85  Identities=25%  Similarity=0.303  Sum_probs=60.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC------CCccc---ccC---HHHhhcCCCEEEEeccCChhhh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG------VSYPF---YAN---VSGLAADSDVLIVCCALTEETH  214 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~------~~~~~---~~~---l~e~l~~aDiV~~~lp~~~~t~  214 (286)
                      .|.+|.|+|.|.+|...++.++.+|.+|++.+++.++.      .+...   ..+   +.++....|+|+-++....   
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~---  256 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHH---  256 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCC---
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChH---
Confidence            57899999999999999999999999999988876531      12211   122   2233346899998876321   


Q ss_pred             hcccHHHHhcCCCCcEEEEcCC
Q 043239          215 HMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                        .-...++.++++..++.++.
T Consensus       257 --~~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          257 --ALEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             --CSHHHHTTEEEEEEEEECSC
T ss_pred             --HHHHHHHHhccCCEEEEeCC
Confidence              12456777888888888863

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=95.07  E-value=0.028  Score=52.08  Aligned_cols=65  Identities=18%  Similarity=0.316  Sum_probs=44.8

Q ss_pred             CCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----C--cc---cc---cCHHHhhcCCCEEEE
Q 043239          140 YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----S--YP---FY---ANVSGLAADSDVLIV  205 (286)
Q Consensus       140 ~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----~--~~---~~---~~l~e~l~~aDiV~~  205 (286)
                      |.++....+++|+|+|-|..|+.+++.++.+|++|.+++ +.....    .  ..   .+   ..+.++++.+|+|+.
T Consensus        16 ~~~~~mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~   92 (403)
T 3k5i_A           16 YFQGHMWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKEREAVRQLAKTCDVVTA   92 (403)
T ss_dssp             -----CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHHHHHHHHTTCSEEEE
T ss_pred             eEeccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CCCCcHHHhccccceeecCCCCHHHHHHHHHhCCEEEE
Confidence            445666778999999999999999999999999998888 443211    1  11   11   235567888998764

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=95.05  E-value=0.034  Score=50.64  Aligned_cols=82  Identities=15%  Similarity=0.229  Sum_probs=50.1

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCC-CEEEEEC--CCCC-CCC----Cc----------c--ccc--CHHHhhcCCCEEEE
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFG-CSIAYTS--RKKK-PGV----SY----------P--FYA--NVSGLAADSDVLIV  205 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g-~~V~~~~--r~~~-~~~----~~----------~--~~~--~l~e~l~~aDiV~~  205 (286)
                      .+|||+| +|.+|+.+.+.|.... +++....  ++.. ...    +.          .  .+.  +.++ +.++|+|+.
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~vDvVf~   83 (350)
T 2ep5_A            5 IKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDVDVVLS   83 (350)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTCSEEEE
T ss_pred             cEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCCCEEEE
Confidence            5899999 8999999999998764 4776553  2211 100    00          0  111  3333 478999999


Q ss_pred             eccCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 043239          206 CCALTEETHHMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       206 ~lp~~~~t~~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                      |+|... +..+. ...   ++.|..+||.+.
T Consensus        84 atp~~~-s~~~a-~~~---~~aG~~VId~s~  109 (350)
T 2ep5_A           84 ALPNEL-AESIE-LEL---VKNGKIVVSNAS  109 (350)
T ss_dssp             CCCHHH-HHHHH-HHH---HHTTCEEEECSS
T ss_pred             CCChHH-HHHHH-HHH---HHCCCEEEECCc
Confidence            998432 22221 222   356888999874

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=95.05  E-value=0.012  Score=55.57  Aligned_cols=104  Identities=15%  Similarity=0.236  Sum_probs=64.4

Q ss_pred             CCEEEEEcCChHHHHHHHHhcc----------CCCEEE-EECCCCCCCC----CcccccCHHHhhc--CCCEEEEeccCC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVP----------FGCSIA-YTSRKKKPGV----SYPFYANVSGLAA--DSDVLIVCCALT  210 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~----------~g~~V~-~~~r~~~~~~----~~~~~~~l~e~l~--~aDiV~~~lp~~  210 (286)
                      ..+|||+|+|.||+.+++.+..          .+.+|. +++++..+..    +...+.+++++++  +.|+|+.++|..
T Consensus        10 ~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~~~~~~~d~~ell~d~diDvVve~tp~~   89 (444)
T 3mtj_A           10 PIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAGGLPLTTNPFDVVDDPEIDIVVELIGGL   89 (444)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHTTCCEESCTHHHHTCTTCCEEEECCCSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcccCcccCCHHHHhcCCCCCEEEEcCCCc
Confidence            3589999999999999987653          355654 5677654321    2344678999986  479999999853


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHhCCee
Q 043239          211 EETHHMINKDVMTALGKEGVIINVGRGAL-IDEKELVHFLVRGSLV  255 (286)
Q Consensus       211 ~~t~~~i~~~~l~~mk~g~ilvn~srg~~-vd~~al~~al~~~~i~  255 (286)
                      .....+    ....|+.|.-++-.--+-. -..+.|.++.++.+..
T Consensus        90 ~~h~~~----~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~  131 (444)
T 3mtj_A           90 EPAREL----VMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVM  131 (444)
T ss_dssp             TTHHHH----HHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hHHHHH----HHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCe
Confidence            222222    2334556655554322211 2346777777766554

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=95.04  E-value=0.012  Score=53.16  Aligned_cols=85  Identities=20%  Similarity=0.140  Sum_probs=59.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC---C-ccc-----ccCHHHhhc-----CCCEEEEeccCCh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV---S-YPF-----YANVSGLAA-----DSDVLIVCCALTE  211 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~---~-~~~-----~~~l~e~l~-----~aDiV~~~lp~~~  211 (286)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++..   . ...     ..++.+.+.     ..|+|+-++...+
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~la~~v~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~  243 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNEA  243 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTTCSEEECTTTSCHHHHHHHHHSSCEEEEEECSCCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhHHhccCcCccCHHHHHHHhcCCCCCEEEECCCCHH
Confidence            68899999999999999999999999 8999988754311   1 110     123433332     5899998876322


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCC
Q 043239          212 ETHHMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       212 ~t~~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                      .     -+..++.|+++..++.++.
T Consensus       244 ~-----~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          244 A-----IHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             H-----HHHHHHHEEEEEEEEECCC
T ss_pred             H-----HHHHHHHHhcCCEEEEEec
Confidence            1     1456677888888888764

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=95.00  E-value=0.043  Score=48.27  Aligned_cols=62  Identities=21%  Similarity=0.188  Sum_probs=46.8

Q ss_pred             CCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhc--CCCEEEEeccCC
Q 043239          147 GGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAA--DSDVLIVCCALT  210 (286)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~--~aDiV~~~lp~~  210 (286)
                      .+++|.|.| .|.||+.+++.|...|++|++.+|+...  ......++.++++  .+|+|+.+....
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~--D~~d~~~~~~~~~~~~~d~vih~a~~~   66 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDEL--NLLDSRAVHDFFASERIDQVYLAAAKV   66 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTC--CTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccC--CccCHHHHHHHHHhcCCCEEEEcCeec
Confidence            357899999 5999999999999999999988775321  2222345667787  899998776543

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=95.00  E-value=0.031  Score=49.21  Aligned_cols=63  Identities=24%  Similarity=0.262  Sum_probs=44.4

Q ss_pred             CCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC-C-------cccccCHHHhhcC--CCEEEEeccC
Q 043239          147 GGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-S-------YPFYANVSGLAAD--SDVLIVCCAL  209 (286)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-~-------~~~~~~l~e~l~~--aDiV~~~lp~  209 (286)
                      ..++|.|.| .|.||+.+++.|...|++|++.+|+..... .       .....++.++++.  .|+|+.+...
T Consensus        11 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~   84 (321)
T 2pk3_A           11 GSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAK   84 (321)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSC
T ss_pred             CcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCccccceeeEEECCCCCHHHHHHHHHhcCCCEEEEcCcc
Confidence            356888887 699999999999999999999988765411 1       1112345566765  8999887654

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=95.00  E-value=0.083  Score=46.45  Aligned_cols=37  Identities=19%  Similarity=0.219  Sum_probs=33.2

Q ss_pred             ccCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCC
Q 043239          144 STLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRK  180 (286)
Q Consensus       144 ~~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~  180 (286)
                      .++.||++.|.|. |.||..+|+.|...|++|++.+++
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~   82 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLP   82 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCG
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999985 789999999999999999998876

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=94.99  E-value=0.026  Score=50.63  Aligned_cols=60  Identities=25%  Similarity=0.416  Sum_probs=43.0

Q ss_pred             CEEEEEcCChHHHHHHHHhcc--CCCEE-EEECCCCCC-C------CCcc-cccCHHHhhc-----CCCEEEEecc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVP--FGCSI-AYTSRKKKP-G------VSYP-FYANVSGLAA-----DSDVLIVCCA  208 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~--~g~~V-~~~~r~~~~-~------~~~~-~~~~l~e~l~-----~aDiV~~~lp  208 (286)
                      .+|||||+|.||+.+++.+..  -+.++ .+.++++++ .      .+.. ...+.+++++     +.|+|+.++|
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp   80 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATS   80 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSC
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCC
Confidence            589999999999999999844  35665 467877655 1      1222 1345677754     5799999998

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=94.96  E-value=0.11  Score=45.71  Aligned_cols=108  Identities=15%  Similarity=0.139  Sum_probs=72.9

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCC--CCCcccccCHHHhhcCCCEEEEeccCChh----------h
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP--GVSYPFYANVSGLAADSDVLIVCCALTEE----------T  213 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~--~~~~~~~~~l~e~l~~aDiV~~~lp~~~~----------t  213 (286)
                      +.|++|.|+|.-..-..+++.|...|++|.+...+...  ..+.....++.+.++++|+|++..|....          .
T Consensus         3 ~~~m~i~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~~~~~~~   82 (293)
T 3d4o_A            3 LTGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSNE   82 (293)
T ss_dssp             CTTCEEEEECBCHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGGGCSEEECCTTCCCTTCBCCBSSCSC
T ss_pred             ccCcEEEEECCCHHHHHHHHHHHhCCCEEEEeccccccccccccccccchHHHHhcCCEEEeccccccCCceeecccccC
Confidence            67889999999999999999999999999876543221  12223345677788999998864332110          1


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEE
Q 043239          214 HHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELV  258 (286)
Q Consensus       214 ~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~  258 (286)
                      ...++++.++.+++..++. +   + +|..++.+++.+.+|...-
T Consensus        83 ~~~~~~~~l~~~~~l~~i~-~---G-~d~id~~~~~~~~gi~v~~  122 (293)
T 3d4o_A           83 SIVLTEEMIEKTPNHCVVY-S---G-ISNTYLNQCMKKTNRTLVK  122 (293)
T ss_dssp             CCBCCHHHHHTSCTTCEEE-E---S-SCCHHHHHHHHHHTCEEEE
T ss_pred             CccchHHHHHhCCCCCEEE-e---c-CCCHHHHHHHHHcCCeEEE
Confidence            1236788999998877765 3   2 3666666666666665443

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=94.96  E-value=0.02  Score=49.67  Aligned_cols=38  Identities=24%  Similarity=0.413  Sum_probs=33.3

Q ss_pred             cCCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      ++.|+++.|.| .|.||+.+|+.|.+.|++|++.+|+.+
T Consensus         3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~   41 (263)
T 2a4k_A            3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREER   41 (263)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            36789999998 478999999999999999999988753

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=94.94  E-value=0.0083  Score=54.02  Aligned_cols=84  Identities=14%  Similarity=0.178  Sum_probs=57.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc-----ccCHHHhh----cCCCEEEEeccCChh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF-----YANVSGLA----ADSDVLIVCCALTEE  212 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~-----~~~l~e~l----~~aDiV~~~lp~~~~  212 (286)
                      .|.+|.|+|.|.+|...++.++..|.+|++.+++.++..     +...     ..++.+.+    ...|+|+.+....+.
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~~  245 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPKA  245 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHHH
Confidence            578999999999999999999999999999988765421     2111     12333322    257888887652211


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcC
Q 043239          213 THHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       213 t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                           -...++.++++..++.++
T Consensus       246 -----~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          246 -----FSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             -----HHHHHHHEEEEEEEEECS
T ss_pred             -----HHHHHHHhccCCEEEEeC
Confidence                 134566778888877775

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=94.93  E-value=0.034  Score=49.79  Aligned_cols=65  Identities=18%  Similarity=0.180  Sum_probs=48.8

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCC----------------CCc-------ccccCHHHhhcCC
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPG----------------VSY-------PFYANVSGLAADS  200 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~----------------~~~-------~~~~~l~e~l~~a  200 (286)
                      ++.+++|.|.|. |.||+.+++.|...|++|++.+|+....                ...       ....++.++++.+
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  103 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV  103 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence            367889999997 9999999999999999999998865321                111       1123456778899


Q ss_pred             CEEEEeccC
Q 043239          201 DVLIVCCAL  209 (286)
Q Consensus       201 DiV~~~lp~  209 (286)
                      |+|+.+...
T Consensus       104 d~vih~A~~  112 (352)
T 1sb8_A          104 DYVLHQAAL  112 (352)
T ss_dssp             SEEEECCSC
T ss_pred             CEEEECCcc
Confidence            999887653

>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}

Probab=94.93  E-value=0.048  Score=50.84  Aligned_cols=90  Identities=11%  Similarity=0.166  Sum_probs=66.6

Q ss_pred             CCCCEEEEEc-----CCh---HHHHHHHHhccCCCEEEEECCCCCC-CC-------------C--cccccCHHHhhcCCC
Q 043239          146 LGGKRVGIVG-----LGS---IGSEVAKRLVPFGCSIAYTSRKKKP-GV-------------S--YPFYANVSGLAADSD  201 (286)
Q Consensus       146 l~g~~vgIiG-----~G~---iG~~~A~~l~~~g~~V~~~~r~~~~-~~-------------~--~~~~~~l~e~l~~aD  201 (286)
                      +.|.+|+|+|     +|.   +..+++..+..+|++|.+..+..-. ..             +  +....+++|+++++|
T Consensus       186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~~~~d~~eav~~AD  265 (418)
T 2yfk_A          186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFTKTNSMAEAFKDAD  265 (418)
T ss_dssp             GTTCEEEEECCCCSSSCCCSHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEEEESCHHHHHTTCS
T ss_pred             cCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhcCCC
Confidence            7899999997     354   9999999999999999998875432 11             1  233578999999999


Q ss_pred             EEEEeccCC----------------h-------------h--hhhcccHHHHhcCCC-CcEEEEcC
Q 043239          202 VLIVCCALT----------------E-------------E--THHMINKDVMTALGK-EGVIINVG  235 (286)
Q Consensus       202 iV~~~lp~~----------------~-------------~--t~~~i~~~~l~~mk~-g~ilvn~s  235 (286)
                      +|.+-+=..                +             +  ....++.+.++.+|+ +++|.-+.
T Consensus       266 VVytd~W~sm~~Q~ER~~~~~~g~~~~~~~~~~~~~~~~~~~~~y~vt~elm~~ak~~dai~MHcL  331 (418)
T 2yfk_A          266 VVYPKSWAPFAAMEKRTELYGNGDQAGIDQLEQELLSQNKKHKDWECTEELMKTTKDGKALYMHCL  331 (418)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHGGGTTCCBCHHHHHTSGGGCCEECCCS
T ss_pred             EEEEccccchhHHHHHhhhhccccchhhhhhhhhhhhHHHHHhhcCCCHHHHHhcCCCCeEEECCC
Confidence            998842100                0             0  123568889999986 89998885

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=94.92  E-value=0.02  Score=53.94  Aligned_cols=105  Identities=12%  Similarity=0.219  Sum_probs=64.4

Q ss_pred             CEEEEEcCChHHHHHHHHhccC-CCEEE-EECCCCCCCC-------C----------------------cccccCHHHhh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF-GCSIA-YTSRKKKPGV-------S----------------------YPFYANVSGLA  197 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~-g~~V~-~~~r~~~~~~-------~----------------------~~~~~~l~e~l  197 (286)
                      .+|||||+|.||+.+++.+... +++|. ++|++.++..       +                      ...+.+.++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL  103 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLIL  103 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHh
Confidence            4899999999999999988754 66764 6787764321       1                      12357899998


Q ss_pred             c--CCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCC-cccCHHHHHHHHHhCCeeEE
Q 043239          198 A--DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRG-ALIDEKELVHFLVRGSLVEL  257 (286)
Q Consensus       198 ~--~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg-~~vd~~al~~al~~~~i~ga  257 (286)
                      +  +.|+|+.++|.. ....   +-.+..|+.|.-++...-+ .......|.++.++.++...
T Consensus       104 ~d~dIDaVviaTp~p-~~H~---e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvvl~  162 (446)
T 3upl_A          104 SNPLIDVIIDATGIP-EVGA---ETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVIYS  162 (446)
T ss_dssp             TCTTCCEEEECSCCH-HHHH---HHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             cCCCCCEEEEcCCCh-HHHH---HHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCeee
Confidence            7  489999998743 2111   1223334555444422111 12234567776666555433

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=94.91  E-value=0.058  Score=47.34  Aligned_cols=60  Identities=20%  Similarity=0.176  Sum_probs=43.8

Q ss_pred             CCEEEEEc-CChHHHHHHHHhccCCCEEEEECC-CCCC---C------C-----------CcccccCHHHhhcCCCEEEE
Q 043239          148 GKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSR-KKKP---G------V-----------SYPFYANVSGLAADSDVLIV  205 (286)
Q Consensus       148 g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r-~~~~---~------~-----------~~~~~~~l~e~l~~aDiV~~  205 (286)
                      |++|.|.| .|.||+.+++.|...|++|.+..| +...   .      .           ......+++++++.+|+|+.
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   80 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIFH   80 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEEE
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEEE
Confidence            57899999 699999999999999999998877 4321   0      0           01112456678889999987


Q ss_pred             ec
Q 043239          206 CC  207 (286)
Q Consensus       206 ~l  207 (286)
                      +.
T Consensus        81 ~A   82 (322)
T 2p4h_X           81 TA   82 (322)
T ss_dssp             CC
T ss_pred             cC
Confidence            65

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=94.90  E-value=0.025  Score=51.67  Aligned_cols=38  Identities=29%  Similarity=0.431  Sum_probs=33.3

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKK  181 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~  181 (286)
                      ..|.+++|.|+|+|.+|..+|+.|...|. ++.++|+..
T Consensus       114 ~~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          114 DKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            45889999999999999999999999898 788887643

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=94.89  E-value=0.039  Score=47.77  Aligned_cols=91  Identities=15%  Similarity=0.254  Sum_probs=59.1

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCCC-----cc-------cccCHH---HhhcCCCEEEEeccC
Q 043239          146 LGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGVS-----YP-------FYANVS---GLAADSDVLIVCCAL  209 (286)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~-----~~-------~~~~l~---e~l~~aDiV~~~lp~  209 (286)
                      ++||++.|-|. +-||+++|++|...|++|.+.+|+.+....     ..       ...+++   +-+..-|+++++.-.
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLVNNAGi   88 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEALPRLDVLVNNAGI   88 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSCCCTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhhhcCCeEEEEecCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence            58999999985 569999999999999999999988765321     00       011222   335678999887543


Q ss_pred             Chhhhh------------------cccHHHHhcCC-CCcEEEEcCC
Q 043239          210 TEETHH------------------MINKDVMTALG-KEGVIINVGR  236 (286)
Q Consensus       210 ~~~t~~------------------~i~~~~l~~mk-~g~ilvn~sr  236 (286)
                      ......                  ++.+..+++|+ .+..|||++.
T Consensus        89 ~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS  134 (242)
T 4b79_A           89 SRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIAS  134 (242)
T ss_dssp             CCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECC
T ss_pred             CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEee
Confidence            222111                  11133455664 4678899974

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=94.89  E-value=0.039  Score=50.09  Aligned_cols=28  Identities=21%  Similarity=0.287  Sum_probs=22.9

Q ss_pred             CEEEEEcCChHHHHHHHHhccC---CCEEEE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF---GCSIAY  176 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~---g~~V~~  176 (286)
                      .+|||+|+|.||+.+.|.|...   .++|.+
T Consensus         2 ikVgInG~G~IGr~llR~l~~~~~p~~eiva   32 (337)
T 1rm4_O            2 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVV   32 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSCSEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCCCeEEEE
Confidence            3799999999999999998765   346654

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=94.88  E-value=0.025  Score=51.21  Aligned_cols=85  Identities=18%  Similarity=0.248  Sum_probs=59.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-----Cccc---cc-----CHH-Hhh----cCCCEEEEec
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-----SYPF---YA-----NVS-GLA----ADSDVLIVCC  207 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-----~~~~---~~-----~l~-e~l----~~aDiV~~~l  207 (286)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++..     +...   ..     ++. ++.    ...|+|+-++
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~  250 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  250 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECC
Confidence            47899999999999999999999999 8999887765321     2211   11     111 121    3589999887


Q ss_pred             cCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 043239          208 ALTEETHHMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       208 p~~~~t~~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                      ... .+    -...+..++++..++.++.
T Consensus       251 g~~-~~----~~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          251 GAE-AS----IQAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             CCH-HH----HHHHHHHSCTTCEEEECSC
T ss_pred             CCh-HH----HHHHHHHhcCCCEEEEEec
Confidence            632 11    1456788999999998874

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=94.87  E-value=0.049  Score=47.34  Aligned_cols=60  Identities=17%  Similarity=0.185  Sum_probs=44.4

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC-CcccccCHHHhhcC--CCEEEEeccC
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV-SYPFYANVSGLAAD--SDVLIVCCAL  209 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-~~~~~~~l~e~l~~--aDiV~~~lp~  209 (286)
                      |+|.|.|. |.+|+.+++.|. .|++|.+.+|+..... ......++.+++++  +|+|+.+...
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~   64 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAAAH   64 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCSSSCCCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccccccccCCCHHHHHHHHHhcCCCEEEECccc
Confidence            47899986 999999999999 7999999998763221 12223456677776  9999877543

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=94.85  E-value=0.027  Score=49.29  Aligned_cols=58  Identities=24%  Similarity=0.279  Sum_probs=42.8

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEec
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCC  207 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~l  207 (286)
                      |+|.|.|. |-||+.+++.|.+.|++|++..|++.+.. ........+.++++|.|+-+.
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~~-~~~~~~~~~~l~~~d~vihla   59 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGR-ITWDELAASGLPSCDAAVNLA   59 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTE-EEHHHHHHHCCCSCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcCe-eecchhhHhhccCCCEEEEec
Confidence            58999996 99999999999999999999998765431 111111234578899887654

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=94.83  E-value=0.018  Score=49.95  Aligned_cols=60  Identities=15%  Similarity=0.173  Sum_probs=45.3

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccC--CCEEEEECCCCCCCC-----Cc-------ccccCHHHhhcCCCEEEEecc
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPF--GCSIAYTSRKKKPGV-----SY-------PFYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~--g~~V~~~~r~~~~~~-----~~-------~~~~~l~e~l~~aDiV~~~lp  208 (286)
                      |+|.|.|. |.+|+.+++.|...  |++|.+.+|+..+..     +.       ....++.++++++|+|+.+..
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   75 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISG   75 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence            46888886 99999999999998  999999988765431     11       112356678889999987754

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=94.82  E-value=0.054  Score=48.74  Aligned_cols=39  Identities=18%  Similarity=0.264  Sum_probs=34.2

Q ss_pred             ccCCCCEEEEEc-CChHHHHHHHHhcc--CCCEEEEECCCCC
Q 043239          144 STLGGKRVGIVG-LGSIGSEVAKRLVP--FGCSIAYTSRKKK  182 (286)
Q Consensus       144 ~~l~g~~vgIiG-~G~iG~~~A~~l~~--~g~~V~~~~r~~~  182 (286)
                      .++.+++|.|.| .|.||+.+++.|..  .|++|++.+|+..
T Consensus         6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~   47 (362)
T 3sxp_A            6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRS   47 (362)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCC
T ss_pred             hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCc
Confidence            357899999996 59999999999999  8999999988654

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=94.80  E-value=0.016  Score=52.72  Aligned_cols=84  Identities=17%  Similarity=0.161  Sum_probs=59.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc-----ccCHHH----hhc--CCCEEEEeccCC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF-----YANVSG----LAA--DSDVLIVCCALT  210 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~-----~~~l~e----~l~--~aDiV~~~lp~~  210 (286)
                      .|++|.|+|.|.+|...++.++..|++|++.+++.++..     +...     ..++.+    +..  ..|+|+-++. .
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g-~  267 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAG-G  267 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEETT-S
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC-h
Confidence            588999999999999999999999999999988754321     2111     123332    222  5899988875 2


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCC
Q 043239          211 EETHHMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       211 ~~t~~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                      +     .-...+..++++..++.++.
T Consensus       268 ~-----~~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          268 A-----GLGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             S-----CHHHHHHHEEEEEEEEEECC
T ss_pred             H-----HHHHHHHHhhcCCEEEEEec
Confidence            1     12456777888888888763

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=94.78  E-value=0.069  Score=47.35  Aligned_cols=60  Identities=20%  Similarity=0.193  Sum_probs=44.8

Q ss_pred             CCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC------------Cc-------ccccCHHHhhcCCCEEEEec
Q 043239          148 GKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------------SY-------PFYANVSGLAADSDVLIVCC  207 (286)
Q Consensus       148 g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------------~~-------~~~~~l~e~l~~aDiV~~~l  207 (286)
                      +++|.|.| .|.||+.+++.|...|++|.+..|+.....            ..       ....++.++++.+|+|+.+.
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A   88 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHVA   88 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEES
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEeC
Confidence            68999999 799999999999999999988766543211            11       11245667888999987654

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=94.78  E-value=0.0089  Score=52.18  Aligned_cols=42  Identities=21%  Similarity=0.275  Sum_probs=34.9

Q ss_pred             CCcccCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          141 PLGSTLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       141 ~~~~~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      .+...+.||++.|.|. |.||+.+|+.|...|++|++.+|+.+
T Consensus        21 ~m~~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   63 (270)
T 3ftp_A           21 SMDKTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEA   63 (270)
T ss_dssp             --CCTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             ccccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3556789999999985 78999999999999999999988643

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=94.77  E-value=0.087  Score=50.08  Aligned_cols=101  Identities=16%  Similarity=0.291  Sum_probs=69.7

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEE-CCCCCC--CCC---------------------cccccCHHHhh-cC
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYT-SRKKKP--GVS---------------------YPFYANVSGLA-AD  199 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~-~r~~~~--~~~---------------------~~~~~~l~e~l-~~  199 (286)
                      ++.|++|.|-|+|++|+..|+.|...|.+|+.. |.+..-  ..+                     .....+  +++ ..
T Consensus       241 ~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~a~~~~~--~il~~~  318 (501)
T 3mw9_A          241 GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEG--SILEVD  318 (501)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTTSEEECS--CGGGSC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccCceeecc--cccccc
Confidence            589999999999999999999999999998764 322110  000                     001111  333 46


Q ss_pred             CCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          200 SDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       200 aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      |||++=|.     +.+.|+.+..+.++ -.+|+-.+.+.+ ..++ .+.|.+++|.
T Consensus       319 ~DIliPcA-----~~n~I~~~na~~l~-akiV~EgAN~p~-T~eA-~~iL~~rGIl  366 (501)
T 3mw9_A          319 CDILIPAA-----SEKQLTKSNAPRVK-AKIIAEGANGPT-TPEA-DKIFLERNIM  366 (501)
T ss_dssp             CSEEEECS-----SSCCBCTTTGGGCC-CSEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             ceEEeecc-----ccCccCHhHHHHcC-ceEEEeCCCCcC-CHHH-HHHHHHCCCE
Confidence            99887764     46788888888886 357888888874 4444 4677777774

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=94.77  E-value=0.052  Score=49.40  Aligned_cols=81  Identities=17%  Similarity=0.150  Sum_probs=49.1

Q ss_pred             CEEEEEcCChHHHHHHHHhccC-CCEEEEE-CCCCCCC------C------Cc--------------ccccCHHHhhcCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF-GCSIAYT-SRKKKPG------V------SY--------------PFYANVSGLAADS  200 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~-g~~V~~~-~r~~~~~------~------~~--------------~~~~~l~e~l~~a  200 (286)
                      .+|||+|+|.||+.+++.|... +++|.+. +++.+..      .      .+              ....+.++++.++
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~v   82 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDA   82 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGGC
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccCC
Confidence            4899999999999999998765 5776654 3321110      0      00              0011334455789


Q ss_pred             CEEEEeccCChhhhhcccHHH-HhcCCCCcEEEEc
Q 043239          201 DVLIVCCALTEETHHMINKDV-MTALGKEGVIINV  234 (286)
Q Consensus       201 DiV~~~lp~~~~t~~~i~~~~-l~~mk~g~ilvn~  234 (286)
                      |+|+.|+|......     .. -.+++.|..+|..
T Consensus        83 DiV~eatg~~~s~~-----~a~~~~l~aG~~VI~s  112 (343)
T 2yyy_A           83 DIVVDGAPKKIGKQ-----NLENIYKPHKVKAILQ  112 (343)
T ss_dssp             SEEEECCCTTHHHH-----HHHHTTTTTTCEEEEC
T ss_pred             CEEEECCCccccHH-----HHHHHHHHCCCEEEEC
Confidence            99999987542111     11 2456777766654

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=94.76  E-value=0.017  Score=52.80  Aligned_cols=85  Identities=24%  Similarity=0.314  Sum_probs=59.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-----Cccc-----ccCHHHhhc--------CCCEEEEec
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-----SYPF-----YANVSGLAA--------DSDVLIVCC  207 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-----~~~~-----~~~l~e~l~--------~aDiV~~~l  207 (286)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++..     +...     ..++.+.+.        ..|+|+-++
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~  261 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECA  261 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECC
Confidence            47899999999999999999999999 8998887765421     2211     134444433        379998886


Q ss_pred             cCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 043239          208 ALTEETHHMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       208 p~~~~t~~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                      .. +.+    -...+..++++..++.++.
T Consensus       262 G~-~~~----~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          262 GV-AET----VKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             CC-HHH----HHHHHHHEEEEEEEEECSC
T ss_pred             CC-HHH----HHHHHHHhccCCEEEEEec
Confidence            52 221    2356677888888888763

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=94.70  E-value=0.025  Score=51.56  Aligned_cols=84  Identities=13%  Similarity=0.216  Sum_probs=50.0

Q ss_pred             CCEEEEEc-CChHHHHHHHHhccCCC---EEEEE-CCCCC-CCCCc---c-cccCH-HHhhcCCCEEEEeccCChhhhhc
Q 043239          148 GKRVGIVG-LGSIGSEVAKRLVPFGC---SIAYT-SRKKK-PGVSY---P-FYANV-SGLAADSDVLIVCCALTEETHHM  216 (286)
Q Consensus       148 g~~vgIiG-~G~iG~~~A~~l~~~g~---~V~~~-~r~~~-~~~~~---~-~~~~l-~e~l~~aDiV~~~lp~~~~t~~~  216 (286)
                      |.+|+|+| .|..|+.+.+.|....+   ++... +++.. +...+   . .+.++ .+.++++|+|+.|+|... +...
T Consensus         1 ~~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~-s~~~   79 (344)
T 3tz6_A            1 GLSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETADPSGLDIALFSAGSAM-SKVQ   79 (344)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEEETTEEEEEEETTTSCCTTCSEEEECSCHHH-HHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCceeecCCceEEEeCCHHHhccCCEEEECCChHH-HHHH
Confidence            56899999 89999999999988643   44443 33221 11000   0 11111 134578999999998432 2222


Q ss_pred             ccHHHHhcCCCCcEEEEcCC
Q 043239          217 INKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       217 i~~~~l~~mk~g~ilvn~sr  236 (286)
                      . ..   .++.|+.+||.|.
T Consensus        80 a-~~---~~~~G~~vID~Sa   95 (344)
T 3tz6_A           80 A-PR---FAAAGVTVIDNSS   95 (344)
T ss_dssp             H-HH---HHHTTCEEEECSS
T ss_pred             H-HH---HHhCCCEEEECCC
Confidence            1 12   2356888888874

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=94.70  E-value=0.032  Score=51.08  Aligned_cols=62  Identities=15%  Similarity=0.203  Sum_probs=40.0

Q ss_pred             CEEEEEcCChHHHHHHHHhccC--C--CEEE-EECCCCCCC--C--CcccccCHHHhhcCC-------------------
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF--G--CSIA-YTSRKKKPG--V--SYPFYANVSGLAADS-------------------  200 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~--g--~~V~-~~~r~~~~~--~--~~~~~~~l~e~l~~a-------------------  200 (286)
                      .+|||||+|.||+.+++.+...  |  ++|. +++++....  .  +...+.++++++.+.                   
T Consensus         5 i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~~~~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~~~~~~~   84 (358)
T 1ebf_A            5 VNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKTSPK   84 (358)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHTTCSS
T ss_pred             EEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECChhhhccccCCCCccccHHHHHhcccCCCCCHHHHHHHhhhccC
Confidence            4899999999999999999875  3  4654 455433211  1  222224566666443                   


Q ss_pred             -CEEEEeccCC
Q 043239          201 -DVLIVCCALT  210 (286)
Q Consensus       201 -DiV~~~lp~~  210 (286)
                       |+|+.|+|..
T Consensus        85 ~DvVV~~t~~~   95 (358)
T 1ebf_A           85 PVILVDNTSSA   95 (358)
T ss_dssp             CEEEEECSCCH
T ss_pred             CcEEEEcCCCh
Confidence             7888888754

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=94.69  E-value=0.059  Score=48.38  Aligned_cols=35  Identities=29%  Similarity=0.298  Sum_probs=29.3

Q ss_pred             CCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          148 GKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       148 g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      +++|.|.| .|.||+.+++.|...|++|++.+|+..
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   36 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRAS   36 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence            46899998 599999999999999999999988754

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=94.69  E-value=0.017  Score=52.12  Aligned_cols=83  Identities=17%  Similarity=0.246  Sum_probs=57.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc----ccCHHHh----hc--CCCEEEEeccCC
Q 043239          147 GGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF----YANVSGL----AA--DSDVLIVCCALT  210 (286)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~----~~~l~e~----l~--~aDiV~~~lp~~  210 (286)
                      .|++|.|+|. |.+|..+++.++.+|++|++.+++.++..     +...    ..++.+.    ..  ..|+|+.++...
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~~  238 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGGP  238 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC--
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCchh
Confidence            5889999998 99999999999999999999888765432     1111    1233322    21  488888877531


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcC
Q 043239          211 EETHHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       211 ~~t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                            .-...+..++++..++.++
T Consensus       239 ------~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          239 ------AFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             ------CHHHHHHTEEEEEEEEEC-
T ss_pred             ------HHHHHHHhhcCCCEEEEEE
Confidence                  2245677888888888876

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=94.68  E-value=0.041  Score=47.63  Aligned_cols=58  Identities=24%  Similarity=0.351  Sum_probs=44.5

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhc--CCCEEEEeccC
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAA--DSDVLIVCCAL  209 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~--~aDiV~~~lp~  209 (286)
                      ++|.|.| .|.||+.+++.|...|++|++.+|....   .....++.++++  .+|+|+.+...
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D---~~d~~~~~~~~~~~~~d~vi~~a~~   66 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLD---ITNISQVQQVVQEIRPHIIIHCAAY   66 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSC---TTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCEEEEecccccC---CCCHHHHHHHHHhcCCCEEEECCcc
Confidence            3899999 5999999999999999999999984322   222345667777  59999876543

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=94.67  E-value=0.049  Score=47.05  Aligned_cols=38  Identities=37%  Similarity=0.517  Sum_probs=34.1

Q ss_pred             cCCCCEEEEEcCC---hHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVGLG---SIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG~G---~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      +|+||++.|-|.+   -||.++|+.|...|++|++.+|+.+
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~   43 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKER   43 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHH
Confidence            6899999999974   5999999999999999999988754

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=94.65  E-value=0.038  Score=49.55  Aligned_cols=63  Identities=17%  Similarity=0.151  Sum_probs=46.5

Q ss_pred             CCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC----------Ccc-------cccCHHHhhcC--CCEEEE
Q 043239          146 LGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------SYP-------FYANVSGLAAD--SDVLIV  205 (286)
Q Consensus       146 l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------~~~-------~~~~l~e~l~~--aDiV~~  205 (286)
                      +.+++|.|.| .|.||+.+++.|...|++|.+.+|+.....          ...       ...++.++++.  .|+|+.
T Consensus         7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   86 (357)
T 1rkx_A            7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFH   86 (357)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEE
Confidence            5688999999 699999999999999999999988765421          111       11234556665  799987


Q ss_pred             ecc
Q 043239          206 CCA  208 (286)
Q Consensus       206 ~lp  208 (286)
                      +..
T Consensus        87 ~A~   89 (357)
T 1rkx_A           87 MAA   89 (357)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            754

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=94.62  E-value=0.036  Score=47.29  Aligned_cols=92  Identities=18%  Similarity=0.219  Sum_probs=57.3

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCCC-c----ccccCHHHhhcCC----CEEEEeccCCh---hhhh
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS-Y----PFYANVSGLAADS----DVLIVCCALTE---ETHH  215 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~-~----~~~~~l~e~l~~a----DiV~~~lp~~~---~t~~  215 (286)
                      |++.|.| .|.||+.+|+.|...|++|++.+|+.+.... .    ....++++++++.    |+++.+.-...   ....
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~~~~~~~~~~   81 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKVLGN   81 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHTTCTTCCSEEEECCCCCTTCSSHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhccccccCCCCHHHHHHHHHHhCCCCCEEEECCCCCCCcccHHH
Confidence            4677777 5789999999999999999999887654321 1    1123445566554    99988754332   0010


Q ss_pred             c----------ccHHHHhcCCC--CcEEEEcCCCccc
Q 043239          216 M----------INKDVMTALGK--EGVIINVGRGALI  240 (286)
Q Consensus       216 ~----------i~~~~l~~mk~--g~ilvn~srg~~v  240 (286)
                      .          +.+..++.|++  ...||++|.....
T Consensus        82 ~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~  118 (257)
T 1fjh_A           82 VVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASA  118 (257)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGG
T ss_pred             HHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhh
Confidence            1          12334555533  2678999876544

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=94.57  E-value=0.058  Score=46.77  Aligned_cols=60  Identities=22%  Similarity=0.270  Sum_probs=45.4

Q ss_pred             CCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhc--CCCEEEEeccC
Q 043239          147 GGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAA--DSDVLIVCCAL  209 (286)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~--~aDiV~~~lp~  209 (286)
                      ..++|.|.| .|.||+.+++.|...|++|++.+|+...   .....++.++++  .+|+|+.+...
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D---l~d~~~~~~~~~~~~~d~vih~A~~   73 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLD---ITNVLAVNKFFNEKKPNVVINCAAH   73 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCC---TTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             ccceEEEECCCChHHHHHHHHHHhCCCeEEeccCccCC---CCCHHHHHHHHHhcCCCEEEECCcc
Confidence            456888887 5999999999999999999999986321   222345667777  69999877653

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=94.57  E-value=0.063  Score=50.76  Aligned_cols=106  Identities=8%  Similarity=0.090  Sum_probs=68.5

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCCEEE-EECCCC-----CCC----------------CCcc---------ccc
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA-YTSRKK-----KPG----------------VSYP---------FYA  191 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~-~~~r~~-----~~~----------------~~~~---------~~~  191 (286)
                      |.++.|++|.|-|+|++|...|+.|...|.+|+ +.|.+.     +-.                ....         ...
T Consensus       247 G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~~a~~v  326 (470)
T 2bma_A          247 NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYF  326 (470)
T ss_dssp             TCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEEC
T ss_pred             cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEEe
Confidence            557899999999999999999999999999987 444321     000                0000         001


Q ss_pred             CHHHhh-cCCCEEEEeccCChhhhhcccHHHHhcC-CCC-cEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          192 NVSGLA-ADSDVLIVCCALTEETHHMINKDVMTAL-GKE-GVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       192 ~l~e~l-~~aDiV~~~lp~~~~t~~~i~~~~l~~m-k~g-~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      +.++++ ..|||++=|.     +.+.|+.+..+.+ +++ .+|+--+.+.+ ..++ .+.|.+++|.
T Consensus       327 ~~~~~~~~~~DI~iPcA-----~~~~I~~~na~~l~~~~ak~V~EgAN~p~-T~eA-~~~L~~rGIl  386 (470)
T 2bma_A          327 PNEKPWGVPCTLAFPCA-----TQNDVDLDQAKLLQKNGCILVGEGANMPS-TVDA-INLFKSNNII  386 (470)
T ss_dssp             SSCCTTSSCCSEEEECS-----STTCBCSHHHHHHHHTTCCEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             cCcCeeecCccEEEecc-----ccCcCCHHHHHHHHhcCcEEEEeCCCCCC-CHHH-HHHHHHCCcE
Confidence            112222 3689887764     4567777766666 223 36677777775 4444 6778888775

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=94.56  E-value=0.016  Score=52.23  Aligned_cols=84  Identities=23%  Similarity=0.274  Sum_probs=57.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccC--CCEEEEECCCCCCCC-----CcccccCH-------HHhhc--CCCEEEEeccCC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPF--GCSIAYTSRKKKPGV-----SYPFYANV-------SGLAA--DSDVLIVCCALT  210 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~--g~~V~~~~r~~~~~~-----~~~~~~~l-------~e~l~--~aDiV~~~lp~~  210 (286)
                      .|.+|.|+|.|.+|...++.++.+  |++|++.+++.++..     +....-+.       +++-.  ..|+|+-++...
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~~  249 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLVGTE  249 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCCCh
Confidence            578999999999999999999998  999999998765422     22211111       12221  579999887632


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcC
Q 043239          211 EETHHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       211 ~~t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      ..     -...++.++++..++.++
T Consensus       250 ~~-----~~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          250 ET-----TYNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             HH-----HHHHHHHEEEEEEEEECC
T ss_pred             HH-----HHHHHHHhhcCCEEEEeC
Confidence            11     135567778888777775

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=94.53  E-value=0.089  Score=47.19  Aligned_cols=95  Identities=14%  Similarity=0.235  Sum_probs=60.0

Q ss_pred             CEEEEEc-CChHHHHHHHHhcc---CCCEEEEECCCCCCCC---------Cc--ccc----cCHHHhhcCCCEEEEeccC
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVP---FGCSIAYTSRKKKPGV---------SY--PFY----ANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~---~g~~V~~~~r~~~~~~---------~~--~~~----~~l~e~l~~aDiV~~~lp~  209 (286)
                      ++|+|+| .|.+|.+++..|..   +..++..+|.... ..         ..  ...    .+..+.+++||+|+++.+.
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~-~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~   79 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV-TPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV   79 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTT-HHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCC-chhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCC
Confidence            5899999 89999999999875   3358899998762 11         11  111    2456789999999998653


Q ss_pred             Chh---hh-hcc--c----HH---HHhcCCCCcEEEEcCCCcccCHHHHH
Q 043239          210 TEE---TH-HMI--N----KD---VMTALGKEGVIINVGRGALIDEKELV  246 (286)
Q Consensus       210 ~~~---t~-~~i--~----~~---~l~~mk~g~ilvn~srg~~vd~~al~  246 (286)
                      ...   ++ .++  |    ++   .+....|.+++++++  .++|.-..+
T Consensus        80 ~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt--NPvd~~t~~  127 (312)
T 3hhp_A           80 ARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT--NPVNTTVAI  127 (312)
T ss_dssp             SCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec--CcchhHHHH
Confidence            211   11 111  1    11   122236788999995  556655544

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=94.51  E-value=0.022  Score=51.82  Aligned_cols=29  Identities=24%  Similarity=0.321  Sum_probs=23.8

Q ss_pred             CEEEEEcCChHHHHHHHHhccC---CCEEEEE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF---GCSIAYT  177 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~---g~~V~~~  177 (286)
                      .+|||+|+|.||+.+.+.|...   +++|.+.
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaI   34 (339)
T 3b1j_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAI   34 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSCCSEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence            4899999999999999998765   3676543

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=94.49  E-value=0.072  Score=48.88  Aligned_cols=82  Identities=13%  Similarity=0.168  Sum_probs=48.1

Q ss_pred             CEEEEEc-CChHHHHHHH-HhccCCC---EEEEEC-CCCCCCC----C--cc--cccCHHHhhcCCCEEEEeccCChhhh
Q 043239          149 KRVGIVG-LGSIGSEVAK-RLVPFGC---SIAYTS-RKKKPGV----S--YP--FYANVSGLAADSDVLIVCCALTEETH  214 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~-~l~~~g~---~V~~~~-r~~~~~~----~--~~--~~~~l~e~l~~aDiV~~~lp~~~~t~  214 (286)
                      ++|||+| +|.+|+.+.+ .|...++   .+..+. ++..+..    +  ..  ...+.++ ++++|+|+.|+|.. .+.
T Consensus         2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~~v~~~~g~~i~~~~~~~~~~-~~~~DvVf~a~g~~-~s~   79 (367)
T 1t4b_A            2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEA-LKALDIIVTCQGGD-YTN   79 (367)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHH-HHTCSEEEECSCHH-HHH
T ss_pred             cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCCCccccCCCceEEEecCChHH-hcCCCEEEECCCch-hHH
Confidence            4899999 9999999999 6665543   454433 3221111    1  11  1123444 57999999998833 222


Q ss_pred             hcccHHHHhcCCCCc--EEEEcCC
Q 043239          215 HMINKDVMTALGKEG--VIINVGR  236 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~--ilvn~sr  236 (286)
                      ... ...   .+.|+  ++||.+.
T Consensus        80 ~~a-~~~---~~~G~k~vVID~ss   99 (367)
T 1t4b_A           80 EIY-PKL---RESGWQGYWIDAAS   99 (367)
T ss_dssp             HHH-HHH---HHTTCCCEEEECSS
T ss_pred             HHH-HHH---HHCCCCEEEEcCCh
Confidence            221 222   24565  8999864

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=94.46  E-value=0.071  Score=47.25  Aligned_cols=63  Identities=17%  Similarity=0.165  Sum_probs=46.6

Q ss_pred             CCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC------------Cc-------ccccCHHHhhc--CCCEEE
Q 043239          147 GGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------------SY-------PFYANVSGLAA--DSDVLI  204 (286)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------------~~-------~~~~~l~e~l~--~aDiV~  204 (286)
                      .+++|.|.| .|.||+.+++.|...|++|.+.+|+.....            ..       ....+++++++  ..|+|+
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   83 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAI   83 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEE
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEE
Confidence            467999998 699999999999999999999998765432            11       11234556676  799998


Q ss_pred             EeccC
Q 043239          205 VCCAL  209 (286)
Q Consensus       205 ~~lp~  209 (286)
                      .+...
T Consensus        84 h~A~~   88 (341)
T 3enk_A           84 HFAAL   88 (341)
T ss_dssp             ECCCC
T ss_pred             ECccc
Confidence            76543

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=94.45  E-value=0.13  Score=47.97  Aligned_cols=109  Identities=13%  Similarity=0.127  Sum_probs=69.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------Ccccc--cCHHHhhcCCCEEEEeccC---Chhhh
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SYPFY--ANVSGLAADSDVLIVCCAL---TEETH  214 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~~~~--~~l~e~l~~aDiV~~~lp~---~~~t~  214 (286)
                      +.+++|.|||+|..|.+.|+.|...|++|+++|.......      +....  ....+.+..+|.|++.-..   .+...
T Consensus         3 ~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~~G~~~~~g~~~~~~~~~~d~vV~s~gi~~~~p~~~   82 (439)
T 2x5o_A            3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGIALAHPSLS   82 (439)
T ss_dssp             CTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSCTTSCEEESSCCHHHHHTCSEEEECTTSCTTCHHHH
T ss_pred             CCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhhCCCEEEECCCcHHHhccCCEEEeCCCCCCCCHHHH
Confidence            5788999999999999999999999999999987544321      21111  1124556689998886321   22211


Q ss_pred             -------hcccHH-HH-hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239          215 -------HMINKD-VM-TALGKEGVIINVGRGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       215 -------~~i~~~-~l-~~mk~g~ilvn~srg~~vd~~al~~al~~~~i  254 (286)
                             .++.+- .+ ..++...+-|-=+.|......-+...|++...
T Consensus        83 ~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~  131 (439)
T 2x5o_A           83 AAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGV  131 (439)
T ss_dssp             HHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHTTC
T ss_pred             HHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence                   123321 12 22443345555568888777777778877543

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=94.45  E-value=0.056  Score=48.33  Aligned_cols=61  Identities=16%  Similarity=0.119  Sum_probs=45.2

Q ss_pred             CCEEEEEc-CChHHHHHHHHhccCC-----CEEEEECCCCCCCC----Ccc-------cccCHHHhhcC---CCEEEEec
Q 043239          148 GKRVGIVG-LGSIGSEVAKRLVPFG-----CSIAYTSRKKKPGV----SYP-------FYANVSGLAAD---SDVLIVCC  207 (286)
Q Consensus       148 g~~vgIiG-~G~iG~~~A~~l~~~g-----~~V~~~~r~~~~~~----~~~-------~~~~l~e~l~~---aDiV~~~l  207 (286)
                      |++|.|.| .|.||+.+++.|...|     ++|++.+|+.....    ...       ...++.+++++   +|+|+.+.
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d~vih~a   80 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPDDSQAKLSPLTDVTHVFYVT   80 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSCCCSSCCEEEECCTTSHHHHHHHHTTCTTCCEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccccccCceEEEEeecCCHHHHHHHHhcCCCCCEEEECC
Confidence            57899998 5999999999999999     99999988765421    111       12245567777   89987764


Q ss_pred             c
Q 043239          208 A  208 (286)
Q Consensus       208 p  208 (286)
                      .
T Consensus        81 ~   81 (364)
T 2v6g_A           81 W   81 (364)
T ss_dssp             C
T ss_pred             C
Confidence            3

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	286
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	8e-16
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	2e-13
d1sc6a1	188	c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase	3e-13
d1qp8a2	121	c.23.12.1 (A:1-82,A:264-302) Putative formate dehy	1e-12
d1ygya1	184	c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase	3e-12
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	3e-09
d1mx3a2	133	c.23.12.1 (A:27-125,A:319-352) Transcription corep	6e-09
d1gdha2	129	c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog	1e-08
d2naca2	186	c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas	6e-08
d1pjqa1	113	c.2.1.11 (A:1-113) Siroheme synthase CysG, domain	6e-08
d1ygya2	130	c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy	8e-08
d1dxya2	131	c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa	3e-07
d1j4aa2	134	c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen	7e-07
d1dxya1	199	c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro	1e-06
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	4e-06
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	2e-05
d1sc6a2	132	c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh	6e-05
d1j5pa4	132	c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein	8e-05
d1vpda2	161	c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase	0.002
d1yovb1	426	c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [T	0.003
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	0.003

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 71.9 bits (175), Expect = 8e-16
 Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 6/158 (3%)

Query: 108 ADYVVGLLVDVLRRVSSIDRFVRNGLWPD-HGAYPLGSTLGGKRVGIVGLGSIGSEVAKR 166
           A+  + LL+   RR    ++ +R   WP       +G  L  K +GI G GSIG  +AKR
Sbjct: 6   AEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKR 65

Query: 167 LVPFGCSIAYTSRKKKPGVSYP-----FYANVSGLAADSDVLIVCCALTEETHHMINKDV 221
              F   I Y    +            F+ ++  L + S    +    T ET +  NK  
Sbjct: 66  AQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKAT 125

Query: 222 MTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVL 259
           + +L +  +++N  RG L+D + +V  L  G L     
Sbjct: 126 IKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGF 163

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 65.0 bits (157), Expect = 2e-13
 Identities = 42/157 (26%), Positives = 61/157 (38%), Gaps = 5/157 (3%)

Query: 108 ADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRL 167
           A++VV +++ ++R       + R G W           L    VG V  G IG  V +RL
Sbjct: 4   AEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRL 63

Query: 168 VPFGCSIAYTSRKKKPGVSYPFYANVSG-----LAADSDVLIVCCALTEETHHMINKDVM 222
            PF   + YT R + P                 +    DV+ + C L  ET HMIN + +
Sbjct: 64  APFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETL 123

Query: 223 TALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVL 259
               +   I+N  RG L D   +   L  G L     
Sbjct: 124 KLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAG 160

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 64.6 bits (156), Expect = 3e-13
 Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 3/153 (1%)

Query: 108 ADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRL 167
           A+ V+G L+ +LR V   +     G+     A    +   GK++GI+G G IG+++    
Sbjct: 6   AELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEAR--GKKLGIIGYGHIGTQLGILA 63

Query: 168 VPFGCSIAYTSRKK-KPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALG 226
              G  + +   +   P  +     ++S L   SDV+ +       T +M+    ++ + 
Sbjct: 64  ESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMK 123

Query: 227 KEGVIINVGRGALIDEKELVHFLVRGSLVELVL 259
              ++IN  RG ++D   L   L    L    +
Sbjct: 124 PGSLLINASRGTVVDIPALADALASKHLAGAAI 156

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 61.2 bits (148), Expect = 1e-12
 Identities = 19/127 (14%), Positives = 40/127 (31%), Gaps = 30/127 (23%)

Query: 45  HASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFS 104
               +  +     S +T++ L+ +P L+ +   TAG+DH+  +       +  NAG +  
Sbjct: 25  RGGDLGNVEAALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPPHVTVAGNAG-SNG 83

Query: 105 EDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVA 164
                    ++++ +R                              +     G     +A
Sbjct: 84  YGNERVWRQMVMEAVR-----------------------------NLITYATGGRPRNIA 114

Query: 165 KRLVPFG 171
           KR    G
Sbjct: 115 KREDYIG 121

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 61.9 bits (149), Expect = 3e-12
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 5/132 (3%)

Query: 108 ADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRL 167
           A++ + LL+   R++ + D  +R   W             GK VG+VGLG IG  VA+R+
Sbjct: 6   AEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIF--GKTVGVVGLGRIGQLVAQRI 63

Query: 168 VPFGCSIAYTSRKKKPGVSYPFYANVSG---LAADSDVLIVCCALTEETHHMINKDVMTA 224
             FG  +        P  +      +     L A +D + V    T ET  +I+K+ +  
Sbjct: 64  AAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAK 123

Query: 225 LGKEGVIINVGR 236
                +I+N  R
Sbjct: 124 TKPGVIIVNAAR 135

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 3e-09
 Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 9/164 (5%)

Query: 105 EDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHG-----AYPLGSTLGGKRVGIVGLGSI 159
           E+ AD  +  ++++ RR + + + +R G                + + G+ +GI+GLG +
Sbjct: 1   EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRV 60

Query: 160 GSEVAKRLVPFGCSIAYTSRKKKPGVSYPF----YANVSGLAADSDVLIVCCALTEETHH 215
           G  VA R   FG ++ +       GV         + +  L   SD + + C L E  HH
Sbjct: 61  GQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHH 120

Query: 216 MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVL 259
           +IN   +  + +   ++N  RG L+DEK L   L  G +    L
Sbjct: 121 LINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAAL 164

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 51.1 bits (122), Expect = 6e-09
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 1/89 (1%)

Query: 35  ADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGI 94
           A ST     +  +     L      LT + L    AL I+V   +G D++D++     GI
Sbjct: 30  AQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGI 89

Query: 95  LVTNAGNAFSEDGADYVVGLLVDVLRRVS 123
            V N   A S       + +  +  R + 
Sbjct: 90  AVCNVPAA-SVYSEQASIEMREEAAREIR 117

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 50.0 bits (119), Expect = 1e-08
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 1/91 (1%)

Query: 38  THSFLSRHASSVRAILCLGPSPLTSDTLSLLPA-LEIVVGSTAGIDHVDLQECRRRGILV 96
           T   +   A SV A+L         + +  +P  ++ +   + G DH+DL  C+ RGI V
Sbjct: 34  TIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKV 93

Query: 97  TNAGNAFSEDGADYVVGLLVDVLRRVSSIDR 127
            NA +  ++   D        +       D 
Sbjct: 94  GNAPHGATQAREDMAHQANDLIDALFGGADM 124

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 49.6 bits (118), Expect = 6e-08
 Identities = 20/111 (18%), Positives = 33/111 (29%), Gaps = 10/111 (9%)

Query: 34  SADSTHSFLSRHASSVRAILC--LGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRR 91
             D   S   R       ++     P+ LT + ++    L++ + +  G DHVDLQ    
Sbjct: 75  DKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAID 134

Query: 92  RGILVTNAGNAFSEDGADYVVGLLVDVL--------RRVSSIDRFVRNGLW 134
           R + V       S                       R +      V+ G  
Sbjct: 135 RNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL 185

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} Length = 113

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

 Score = 47.8 bits (113), Expect = 6e-08
 Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 9/115 (7%)

Query: 140 YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG----VSYPFYANVSG 195
            P+   L  +   IVG G +    A+ L+  G  +   +    P      +      V G
Sbjct: 4   LPIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEG 63

Query: 196 LAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLV 250
              ++ +     A+       +N+ V  A     +  NV     +D  +   F++
Sbjct: 64  PFDETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNV-----VDAPKAASFIM 113

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 47.8 bits (113), Expect = 8e-08
 Identities = 25/93 (26%), Positives = 42/93 (45%)

Query: 42  LSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGN 101
           L        A+L    + + ++ L+  P L+IV  +  G+D+VD+     RG+LV NA  
Sbjct: 36  LLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPT 95

Query: 102 AFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLW 134
           + S   A    G  V    R++    FV + + 
Sbjct: 96  SASTAEAQDRAGTDVAESVRLALAGEFVPDAVN 128

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 46.6 bits (110), Expect = 3e-07
 Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 2/93 (2%)

Query: 42  LSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGST--AGIDHVDLQECRRRGILVTNA 99
               A     I  L  +P  +     + A  I   +    G D++D+   ++ GI ++N 
Sbjct: 38  TVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNV 97

Query: 100 GNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNG 132
                    + V   L  ++  ++  +      
Sbjct: 98  PAYTETAVHNMVYFSLQHLVDFLTKGETSTEVT 130

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 45.3 bits (107), Expect = 7e-07
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 46  ASSVRAILCLGPSPLTSDTLSLLPALEIVVGST--AGIDHVDLQECRRRGILVTNAGNAF 103
           A     ++        ++TL  L    I   S    G+D++D+ + +  G  +TN    +
Sbjct: 43  AKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNV-PVY 101

Query: 104 SEDGADYVVGLLVDVLRRVSSIDRFVRNGLWP 135
           S     + V  +V      +      +    P
Sbjct: 102 SY--TTHAVRNMVVKAFDNNLELVEGKEAETP 131

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 46.0 bits (107), Expect = 1e-06
 Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 2/148 (1%)

Query: 108 ADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRL 167
           A++ +   + +LR +  +   ++ G +   G + +G  LG + VG++G G IG    K  
Sbjct: 6   AEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTF-IGKELGQQTVGVMGTGHIGQVAIKLF 64

Query: 168 VPFGCSIAYTSRKKKPGVS-YPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALG 226
             FG  +         G      Y ++  L   SDV+ +     E+  H+IN+     + 
Sbjct: 65  KGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMK 124

Query: 227 KEGVIINVGRGALIDEKELVHFLVRGSL 254
              ++IN  R  LID + ++  L  G L
Sbjct: 125 PGAIVINTARPNLIDTQAMLSNLKSGKL 152

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 44.4 bits (103), Expect = 4e-06
 Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 4/144 (2%)

Query: 108 ADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRL 167
           A++       +LR+  ++D  V            +G  +  + VG+VG G IG    + +
Sbjct: 5   AEHAAIQAARILRQDKAMDEKVARHDLRWAP--TIGREVRDQVVGVVGTGHIGQVFMQIM 62

Query: 168 VPFGCSIAYTSRKKKPGVSYPFYANV--SGLAADSDVLIVCCALTEETHHMINKDVMTAL 225
             FG  +      + P +    Y       L   +DV+ +         HMIN + +  +
Sbjct: 63  EGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKM 122

Query: 226 GKEGVIINVGRGALIDEKELVHFL 249
            ++ VI+NV RG L+D   ++  L
Sbjct: 123 KQDVVIVNVSRGPLVDTDAVIRGL 146

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 1/106 (0%)

Query: 146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIV 205
           + GK   + G G +G   A+ L  FG  +  T       +             ++     
Sbjct: 22  IAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGN 81

Query: 206 CCALTEETHHMINKDVMTALGKEGVIINVG-RGALIDEKELVHFLV 250
               T     +I       +  + ++ N+G     ID K L    V
Sbjct: 82  IFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAV 127

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 40.0 bits (93), Expect = 6e-05
 Identities = 18/82 (21%), Positives = 32/82 (39%)

Query: 42  LSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGN 101
           L         I     + LT D ++    L  +     G + VDL    +RGI V NA  
Sbjct: 41  LKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPF 100

Query: 102 AFSEDGADYVVGLLVDVLRRVS 123
           + +++  + +   +   L + S
Sbjct: 101 SSTQEAQENIGLEVAGKLIKYS 122

>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643 {Thermotoga maritima [TaxId: 2336]} Length = 132

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1643
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.3 bits (91), Expect = 8e-05
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 6/89 (6%)

Query: 150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCAL 209
            V I+G+G+IG ++ +              K  PG        +      SDV  V    
Sbjct: 4   TVLIIGMGNIGKKLVELGNFEKIYAYDRISKDIPG-----VVRLDEFQVPSDVSTVVECA 58

Query: 210 TEETHHMINKDVMTALGKEGVIINVGRGA 238
           + E     +  ++       +II+    A
Sbjct: 59  SPEAVKEYSLQILKN-PVNYIIISTSAFA 86

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 12/96 (12%)

Query: 150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP-----GVSYPFYANVSGLAADSDVLI 204
           +VG +GLG +G  ++K L+  G S+  + R  +             +    +A   DV+I
Sbjct: 2   KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVII 61

Query: 205 VCCALTEETHHMINKDVMTALGKEGVIINVGRGALI 240
                    +    K+V   LG+ G+I     G ++
Sbjct: 62  TMLP-----NSPHVKEVA--LGENGIIEGAKPGTVL 90

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 426

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 117 DVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGC 172
            V + +     F      P   +  L   L   +V ++G G +G E+ K L   G 
Sbjct: 8   HVKKFLERSGPFTHPDFEPSTES--LQFLLDTCKVLVIGAGGLGCELLKNLALSGF 61

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 7/35 (20%), Positives = 16/35 (45%)

Query: 108 ADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPL 142
           A++ + LL+   +R+      ++ G +      PL
Sbjct: 5   AEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPL 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	286
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	100.0
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	100.0
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	100.0
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	100.0
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	100.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	100.0
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	100.0
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	100.0
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.91
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	99.85
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	99.81
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.81
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	99.8
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.8
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	99.79
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	99.75
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.65
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.59
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.58
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.46
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.39
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.37
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.34
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.22
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.22
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.18
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.09
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.07
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.98
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	98.85
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.8
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.8
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.67
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.64
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.63
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.61
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.54
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.45
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.44
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.4
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.39
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	98.36
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.28
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.23
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	98.19
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.16
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.16
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.13
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.08
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.0
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.99
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.94
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.9
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	97.89
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.79
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.69
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.68
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	97.64
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.61
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.57
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	97.56
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	97.54
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.54
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.53
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	97.51
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	97.5
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.5
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.49
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.46
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.46
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.41
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.41
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	97.4
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.4
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	97.39
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.35
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.32
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.31
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.31
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.3
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	97.28
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.26
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	97.21
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	97.2
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	97.19
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.17
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.1
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	97.07
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	97.05
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	97.02
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.97
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.97
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	96.94
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.91
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	96.9
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.9
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	96.87
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	96.85
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.8
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	96.8
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.77
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.74
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	96.68
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	96.66
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	96.64
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	96.6
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.59
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	96.58
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.56
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.55
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	96.51
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.44
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.42
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	96.41
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	96.38
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	96.38
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.36
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.36
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	96.35
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	96.34
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	96.29
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.15
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	96.09
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	96.08
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	95.98
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	95.96
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.91
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.89
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.87
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.87
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	95.85
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	95.85
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	95.81
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.81
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.77
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	95.77
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.75
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	95.73
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.73
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.72
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.69
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.66
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	95.64
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.63
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.62
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.6
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	95.6
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	95.51
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.47
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.47
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.46
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	95.39
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.38
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.38
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.38
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.34
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.32
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.29
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	95.28
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.19
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	95.18
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.15
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.14
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	95.12
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.1
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	95.1
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	95.06
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	95.06
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	95.05
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.03
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	94.99
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	94.98
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	94.98
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	94.97
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	94.96
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.95
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	94.89
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	94.88
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	94.86
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.86
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.84
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.81
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.8
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.8
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.77
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.74
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	94.69
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	94.66
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	94.6
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	94.53
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	94.49
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	94.42
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	94.35
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.34
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	94.32
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	94.31
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	94.31
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	94.25
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	94.25
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	94.14
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	94.12
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	94.1
d1pjca2	193	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.09
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	94.0
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	93.98
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	93.92
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	93.88
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	93.81
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	93.8
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	93.8
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	93.79
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	93.78
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	93.75
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	93.71
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	93.69
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	93.69
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	93.66
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	93.58
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	93.57
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	93.48
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	93.32
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	93.07
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.07
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	93.02
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	93.02
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	92.99
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	92.98
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	92.96
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	92.95
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	92.87
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	92.79
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	92.77
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	92.73
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	92.5
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	92.46
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	92.45
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.3
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.3
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	92.1
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	92.01
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	91.89
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	91.88
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	91.81
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	91.76
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	91.76
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	91.72
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.66
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	91.66
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	91.56
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	91.5
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	91.42
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	91.39
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	91.38
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	91.31
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	91.25
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	91.2
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	91.19
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	91.18
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	91.15
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	91.15
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	91.14
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	91.11
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	91.08
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	90.97
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	90.9
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	90.84
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	90.68
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	90.64
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	90.63
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	90.59
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	90.48
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	90.42
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	90.34
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	90.22
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	90.1
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.06
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	89.96
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	89.87
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	89.85
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	89.45
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	89.43
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	89.41
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	89.39
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	89.36
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	89.04
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	88.94
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	88.79
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	88.73
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	88.69
d1js1x2	161	Transcarbamylase-like protein {Bacteroides fragili	88.38
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	88.35
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	88.29
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	88.27
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	88.23
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	88.19
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	88.08
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	87.93
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	87.69
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	87.67
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.65
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	87.62
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	87.17
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.15
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	87.05
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	86.99
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	86.98
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	86.95
d1xk7a1	402	Crotonobetainyl-CoA:carnitine CoA-transferase, Cai	86.79
d1x74a1	359	2-methylacyl-CoA racemase Mcr {Mycobacterium tuber	86.62
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	85.95
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	85.8
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	85.71
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	85.64
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	85.59
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	85.55
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	85.53
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.4
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.96
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	84.88
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	84.32
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	84.32
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	84.1
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.07
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	83.9
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.72
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	83.38
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	83.33
d2vjma1	427	Formyl-CoA transferase {Oxalobacter formigenes [Ta	82.97
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	82.78
d1q7ea_	417	Hypothetical protein YfdW {Escherichia coli [TaxId	82.35
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	81.7
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	81.69
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	81.49
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	80.79
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	80.64
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	80.5
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	80.1
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	80.04

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=6e-48  Score=325.41  Aligned_cols=179  Identities=26%  Similarity=0.346  Sum_probs=163.4

Q ss_pred             CCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          103 FSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       103 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      |+.+||||++++||++.|+++.+++.++++.|.+.  ...+.++.|+++||+|+|.||+.+|+++++||++|.+|+++..
T Consensus         1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~~--~~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~   78 (184)
T d1ygya1           1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRS--SFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVS   78 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGG--GCCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcc--ccccccccceeeeeccccchhHHHHHHhhhccceEEeecCCCC
Confidence            56799999999999999999999999999999753  2357889999999999999999999999999999999998765


Q ss_pred             CCC---CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEe
Q 043239          183 PGV---SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVL  259 (286)
Q Consensus       183 ~~~---~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~l  259 (286)
                      +..   ......+++|++++||+|++|+|+|++|+++|+++.|++||++++|||+|||++||++||+++|++|+|.||+|
T Consensus        79 ~~~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~l  158 (184)
T d1ygya1          79 PARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGL  158 (184)
T ss_dssp             HHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEE
T ss_pred             hhHHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEE
Confidence            432   12235799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCCcCCcccccc--ccccccc
Q 043239          260 MCLRTSLMCQRSCLHWIM--LCCLHML  284 (286)
Q Consensus       260 Dv~~~e~~~~~~~l~~~~--~~tph~~  284 (286)
                      |||+.||++ +++++..+  ++|||||
T Consensus       159 DV~~~EP~~-~~~l~~~~nviiTPHIG  184 (184)
T d1ygya1         159 DVFATEPCT-DSPLFELAQVVVTPHLG  184 (184)
T ss_dssp             SSCSSSSCS-CCGGGGCTTEEECSSCS
T ss_pred             eCCCCCCCC-CchHhcCCCEEECCCCC
Confidence            999999986 67777655  9999997

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=100.00  E-value=1.1e-46  Score=319.55  Aligned_cols=181  Identities=25%  Similarity=0.417  Sum_probs=163.7

Q ss_pred             cChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCC-----CCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECC
Q 043239          105 EDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHG-----AYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSR  179 (286)
Q Consensus       105 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~-----~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r  179 (286)
                      ++|||++++++|++.|+++.+++.+++|.|.+..     ....+.+|.|++|||||+|+||+.+|+++++|||+|.+|++
T Consensus         1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~   80 (193)
T d1mx3a1           1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDP   80 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECT
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeeccC
Confidence            3799999999999999999999999999998541     12357899999999999999999999999999999999999


Q ss_pred             CCCCCC----CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          180 KKKPGV----SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       180 ~~~~~~----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      ......    +.....++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++||+++|++|+|.
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~  160 (193)
T d1mx3a1          81 YLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIR  160 (193)
T ss_dssp             TSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred             cccccchhhhccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCce
Confidence            766542    3445679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeccCCCCCC-cCCcccccc--cccccccC
Q 043239          256 ELVLMCLRTSLMC-QRSCLHWIM--LCCLHMLL  285 (286)
Q Consensus       256 ga~lDv~~~e~~~-~~~~l~~~~--~~tph~~~  285 (286)
                      ||+||||+.||++ .+++|+..+  ++|||||+
T Consensus       161 ~a~lDV~~~EP~~~~~~~l~~~~nvi~TPHiA~  193 (193)
T d1mx3a1         161 GAALDVHESEPFSFSQGPLKDAPNLICTPHAAW  193 (193)
T ss_dssp             EEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred             EEEEEcCCCCCCCCCchhHHcCCCEEEcCCcCc
Confidence            9999999999976 567777654  99999985

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=100.00  E-value=7.3e-47  Score=319.89  Aligned_cols=180  Identities=24%  Similarity=0.348  Sum_probs=164.8

Q ss_pred             ChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC
Q 043239          106 DGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV  185 (286)
Q Consensus       106 ~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~  185 (286)
                      +||||+++++|++.|+++.++..+++|.|........++++.|+++||+|+|+||+.+|+++++||++|.+|++...+..
T Consensus         2 sVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~   81 (188)
T d2naca1           2 SVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPES   81 (188)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHH
T ss_pred             cHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcccCCcceeccccceeeccccccchhhhhhhhccCceEEEEeecccccc
Confidence            79999999999999999999999999999743222346789999999999999999999999999999999998765432


Q ss_pred             -----CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEee
Q 043239          186 -----SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLM  260 (286)
Q Consensus       186 -----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lD  260 (286)
                           +.....++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++||+++|++|++.||+||
T Consensus        82 ~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ga~lD  161 (188)
T d2naca1          82 VEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGD  161 (188)
T ss_dssp             HHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEES
T ss_pred             ccccccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCceeEEEe
Confidence                 344568999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCcCCcccccc--cccccccC
Q 043239          261 CLRTSLMCQRSCLHWIM--LCCLHMLL  285 (286)
Q Consensus       261 v~~~e~~~~~~~l~~~~--~~tph~~~  285 (286)
                      ||+.||++.+++++..+  ++||||||
T Consensus       162 V~~~EP~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d2naca1         162 VWFPQPAPKDHPWRTMPYNGMTPHISG  188 (188)
T ss_dssp             CCSSSSCCTTCGGGTSTTBCCCCSCTT
T ss_pred             CCCCCCCCCCChHHcCCCeEEccccCc
Confidence            99999999999887555  99999997

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=100.00  E-value=2.6e-46  Score=316.90  Aligned_cols=180  Identities=24%  Similarity=0.338  Sum_probs=161.8

Q ss_pred             cChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCC-CCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCC
Q 043239          105 EDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGA-YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       105 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~-~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      .+|||+++++||++.|+++++++.+++|.|..... ...++++.|+++||||+|+||+.+|+++++||++|.+|++....
T Consensus         3 ~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   82 (191)
T d1gdha1           3 VATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRAS   82 (191)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCC
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHHHhhccccccccccccc
Confidence            58999999999999999999999999999975322 23578999999999999999999999999999999999987654


Q ss_pred             CC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEE
Q 043239          184 GV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELV  258 (286)
Q Consensus       184 ~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~  258 (286)
                      ..     ......++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++||+++|++|+|.||+
T Consensus        83 ~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a~  162 (191)
T d1gdha1          83 SSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAG  162 (191)
T ss_dssp             HHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEE
T ss_pred             cchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEEE
Confidence            32     2334678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeccCCCCCCcCCcccccc--cccccccC
Q 043239          259 LMCLRTSLMCQRSCLHWIM--LCCLHMLL  285 (286)
Q Consensus       259 lDv~~~e~~~~~~~l~~~~--~~tph~~~  285 (286)
                      ||||+.||.+ +.+++..+  ++|||||+
T Consensus       163 lDV~~~EP~~-~~~l~~~~nvi~TPHias  190 (191)
T d1gdha1         163 FDVFAGEPNI-NEGYYDLPNTFLFPHIGS  190 (191)
T ss_dssp             ESCCTTTTSC-CTTGGGCTTEEECSSCTT
T ss_pred             EECCCCCCCC-CchHHcCCCEEECCcccc
Confidence            9999999954 55566544  99999996

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=100.00  E-value=2.7e-47  Score=325.09  Aligned_cols=181  Identities=21%  Similarity=0.296  Sum_probs=161.3

Q ss_pred             cChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC
Q 043239          105 EDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG  184 (286)
Q Consensus       105 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~  184 (286)
                      .+||||+++++|++.|+++.+++.+++|.|.+.. ...+++|.|++|||||+|+||+.+|+++++|||+|++||++....
T Consensus         3 ~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~-~~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~   81 (199)
T d1dxya1           3 AAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAG-TFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG   81 (199)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHT-CCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS
T ss_pred             hHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCccc-CcccccccceeeeeeecccccccccccccccceeeeccCCccchh
Confidence            5899999999999999999999999999997432 236889999999999999999999999999999999999976554


Q ss_pred             C-CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccC
Q 043239          185 V-SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLR  263 (286)
Q Consensus       185 ~-~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~  263 (286)
                      . ......++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++||+++|++|+|.||+||||+
T Consensus        82 ~~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ga~lDV~~  161 (199)
T d1dxya1          82 DHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYE  161 (199)
T ss_dssp             CCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCT
T ss_pred             hhcchhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcceEeccccC
Confidence            3 233467999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCc---------CCc----cc--ccccccccccCC
Q 043239          264 TSLMCQ---------RSC----LH--WIMLCCLHMLLW  286 (286)
Q Consensus       264 ~e~~~~---------~~~----l~--~~~~~tph~~~~  286 (286)
                      .||...         +.+    |+  .+.++|||||||
T Consensus       162 ~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy  199 (199)
T d1dxya1         162 YETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY  199 (199)
T ss_dssp             THHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred             CCCcchhhccccccccChhhHHHhcCCCEEECCccccC
Confidence            998632         111    22  345999999998

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.7e-46  Score=314.37  Aligned_cols=181  Identities=20%  Similarity=0.245  Sum_probs=153.9

Q ss_pred             CCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          103 FSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       103 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      |+++||||+++++|++.|+++.++..++++.|.+.  ...+.++.|++|||+|+|.||+.+|+++.+||++|++|++...
T Consensus         1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~--~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d1sc6a1           1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKL--AAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENK   78 (188)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCccc--ccccccccceEEEEeecccchhhhhhhcccccceEeecccccc
Confidence            57899999999999999999999999999999864  2346789999999999999999999999999999999998765


Q ss_pred             CCC-CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeec
Q 043239          183 PGV-SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMC  261 (286)
Q Consensus       183 ~~~-~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv  261 (286)
                      ... ......+++|++++||+|++|+|++++|+++|+++.|++||++++|||+|||++||++||+++|+++++.+|+|||
T Consensus        79 ~~~~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a~lDV  158 (188)
T d1sc6a1          79 LPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDV  158 (188)
T ss_dssp             CCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC
T ss_pred             chhhhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEEEEec
Confidence            543 3345679999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcCC----cccc--cccccccccC
Q 043239          262 LRTSLMCQRS----CLHW--IMLCCLHMLL  285 (286)
Q Consensus       262 ~~~e~~~~~~----~l~~--~~~~tph~~~  285 (286)
                      |+.||...+.    +++.  +.++||||||
T Consensus       159 ~~~EP~~~~~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d1sc6a1         159 FPTEPATNSDPFTSPLAEFDNVLLTPHIGG  188 (188)
T ss_dssp             ---------CTTTGGGTTCTTEEEECCCSC
T ss_pred             CCCCCCCcCCccchhHhcCCCEEEcCCcCc
Confidence            9999975443    3333  4499999997

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=1.3e-45  Score=310.13  Aligned_cols=178  Identities=17%  Similarity=0.302  Sum_probs=160.9

Q ss_pred             CcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCC
Q 043239          104 SEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       104 ~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      |++||||+++++|+++|++..+++.++++.|.+..   ...++.|++|||||+|.||+.+|+++++||++|.+|+|+...
T Consensus         1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~---~~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~   77 (181)
T d1qp8a1           1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDV---EIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE   77 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCS---CCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC---CCCcccCceEEEeccccccccceeeeeccccccccccccccc
Confidence            46899999999999999999999999999998642   234699999999999999999999999999999999998765


Q ss_pred             CCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccC
Q 043239          184 GVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLR  263 (286)
Q Consensus       184 ~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~  263 (286)
                      .. .....+++|++++||+|++|+|++++|+++|+++.|++||++++|||+|||+++|+++|+++|+++++.+|++||++
T Consensus        78 ~~-~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aalDV~~  156 (181)
T d1qp8a1          78 GP-WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWW  156 (181)
T ss_dssp             SS-SCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCT
T ss_pred             cc-eeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEEEEecCC
Confidence            43 33457899999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CC-CCCcCCcccccc--cccccccC
Q 043239          264 TS-LMCQRSCLHWIM--LCCLHMLL  285 (286)
Q Consensus       264 ~e-~~~~~~~l~~~~--~~tph~~~  285 (286)
                      .| |++.+++++..+  ++|||+||
T Consensus       157 ~e~p~~~~~~l~~~~nvi~TPHiaG  181 (181)
T d1qp8a1         157 GRNDFAKDAEFFSLPNVVATPWVAG  181 (181)
T ss_dssp             TTTCCGGGHHHHTSTTEEECCSCSS
T ss_pred             CCCCCCCCChHHcCCCEEeccccCc
Confidence            65 567777665555  99999997

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=100.00  E-value=8.9e-46  Score=314.82  Aligned_cols=179  Identities=20%  Similarity=0.248  Sum_probs=157.9

Q ss_pred             cChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC
Q 043239          105 EDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG  184 (286)
Q Consensus       105 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~  184 (286)
                      ++||||+++++|+++|+++.+++.++++.|...  ...|++|.|++|||||+|+||+.+|+++++||++|.+||+..+..
T Consensus         2 ~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~w~--~~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~   79 (197)
T d1j4aa1           2 NAIAEHAAIQAARILRQDKAMDEKVARHDLRWA--PTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE   79 (197)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCT--TCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH
T ss_pred             CHHHHHHHHHHHHHHhCcHHHHHHHHhCCCCcC--CCcCccccCCeEEEecccccchhHHHhHhhhcccccccCcccccc
Confidence            579999999999999999999999999987643  236889999999999999999999999999999999999876542


Q ss_pred             C--CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeecc
Q 043239          185 V--SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCL  262 (286)
Q Consensus       185 ~--~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~  262 (286)
                      .  ......++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++||+++|++|++.||+||||
T Consensus        80 ~~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~  159 (197)
T d1j4aa1          80 LEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVY  159 (197)
T ss_dssp             HHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             cccceeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheeeecc
Confidence            2  23346799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcCC-------------ccc--ccccccccccC
Q 043239          263 RTSLMCQRS-------------CLH--WIMLCCLHMLL  285 (286)
Q Consensus       263 ~~e~~~~~~-------------~l~--~~~~~tph~~~  285 (286)
                      +.||...+.             +|+  .+.++|||+|+
T Consensus       160 ~~Ep~~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~  197 (197)
T d1j4aa1         160 EGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAF  197 (197)
T ss_dssp             TTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred             ccCCcccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence            999644332             222  23499999975

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.91  E-value=7.4e-25  Score=173.37  Aligned_cols=120  Identities=22%  Similarity=0.250  Sum_probs=102.9

Q ss_pred             CCCCCCchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhh
Q 043239           12 GAPGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRR   91 (286)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~   91 (286)
                      .+++...+.|++.|++.... .  ...++ +.+.++++|++++++.+++++++++++|+||+|++.|+|+||||+++|++
T Consensus        10 ~~~~~~~~~L~~~~~v~~~~-~--~~~~e-l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~IDl~~~~~   85 (130)
T d1ygya2          10 KLAPSTVAALGDQVEVRWVD-G--PDRDK-LLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATA   85 (130)
T ss_dssp             SCCGGGGTTSCSSSEEEECC-T--TSHHH-HHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSSCCTTBCHHHHHH
T ss_pred             CCCHHHHHHHhCCcEEEECC-C--CCHHH-HHHHcCCCEEEEEcCcccchHHHHhhcccceEEeeecccccchhHHHHHH
Confidence            45677788899999877654 2  22344 45567899999998888999999999999999999999999999999999


Q ss_pred             cCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCC
Q 043239           92 RGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWP  135 (286)
Q Consensus        92 ~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~  135 (286)
                      +||.|+|+|++++.+|||+++++||++.|++..+.+++|+|.|.
T Consensus        86 ~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~a~~~vr~g~~~  129 (130)
T d1ygya2          86 RGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVNV  129 (130)
T ss_dssp             TTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCSC
T ss_pred             CCceEEecCCCCcHHHHHHHHHHHHHHHhhHHHHhhhcccCccC
Confidence            99999999999999999999999999999998876666666553

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.85  E-value=1.7e-23  Score=163.29  Aligned_cols=115  Identities=19%  Similarity=0.226  Sum_probs=98.9

Q ss_pred             cCCCCCCchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHh
Q 043239           11 RGAPGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECR   90 (286)
Q Consensus        11 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~   90 (286)
                      +.+|++..+.+.+.|.++...+             .+++|+++++   +++++.++++|+||||++.|+|+||+|++.++
T Consensus         7 ~~lp~e~~e~L~~~~~v~~~~d-------------~~~~d~~l~~---~~~~~~l~~~~~Lk~i~~~~aG~D~i~~~~~~   70 (121)
T d1qp8a2           7 FELPPEAEEELRKYFKIVRGGD-------------LGNVEAALVS---RITAEELAKMPRLKFIQVVTAGLDHLPWESIP   70 (121)
T ss_dssp             SCCCHHHHHHHHTTCEEECSSC-------------CTTBCCCCBS---CCCHHHHHHCTTCCCEEBSSSCCTTSCCTTSC
T ss_pred             CCCCHHHHHHhhhcceEeeccc-------------ccccceeeee---ccCHHHHhcCCCceEEEecccCcCCCCHHHhc
Confidence            4466667788888887764331             3577888774   68999999999999999999999999999884


Q ss_pred             hcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccC
Q 043239           91 RRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPF  170 (286)
Q Consensus        91 ~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~  170 (286)
                       +||.|+|++|+++.+||||+++++|++.|+                             ++|+|+|.||+++|+++++|
T Consensus        71 -~~i~v~n~~g~~~~~vae~~~~~il~~~r~-----------------------------l~i~G~G~iG~~iA~r~~a~  120 (121)
T d1qp8a2          71 -PHVTVAGNAGSNGYGNERVWRQMVMEAVRN-----------------------------LITYATGGRPRNIAKREDYI  120 (121)
T ss_dssp             -TTSCEECCCSSSSSSCHHHHHHHHHHHHHH-----------------------------HHHHHTTSCCSCBCCGGGTC
T ss_pred             -cCeEEEECCCCChHHHHHHHHHHHHHhcCC-----------------------------EEEEcCCHHHHHHHHHHHhc
Confidence             699999999999999999999999999874                             47999999999999999998


Q ss_pred             C
Q 043239          171 G  171 (286)
Q Consensus       171 g  171 (286)
                      |
T Consensus       121 G  121 (121)
T d1qp8a2         121 G  121 (121)
T ss_dssp             -
T ss_pred             C
Confidence            7

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.81  E-value=4.8e-21  Score=157.37  Aligned_cols=115  Identities=19%  Similarity=0.186  Sum_probs=94.3

Q ss_pred             chhhhC-CCcEEecCCCCCCCchHHHHhccCCceEEEEeC--CCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCe
Q 043239           18 NPPLSE-RFTLLDPLLHSADSTHSFLSRHASSVRAILCLG--PSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGI   94 (286)
Q Consensus        18 ~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~--~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI   94 (286)
                      .+.|++ .++++... +.+ ...+.+.+.+.++|++++++  ...+++|+|+++|+||+|++.|+|+||||+++|+++||
T Consensus        60 r~~Le~~GhelV~~s-d~~-~~~~el~k~l~DADivI~~pf~~~~lt~e~i~~ap~LKlI~~~g~G~D~VDl~aa~e~gI  137 (186)
T d2naca2          60 RKYLESNGHTLVVTS-DKD-GPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNV  137 (186)
T ss_dssp             HHHHHHTTCEEEEES-CCS-STTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTC
T ss_pred             HHHHHHCCCEEEEec-CCC-CChHHHHhhcccCCEEEEecccccccCHHHHhcCccceEEEEeccCCccccHHHHHhCCC
Confidence            344555 45555444 222 22444566778999999963  57799999999999999999999999999999999999


Q ss_pred             EEEecCCCCCcChHHHH--------HHHHHHHHhcchHHHHHHHcCCC
Q 043239           95 LVTNAGNAFSEDGADYV--------VGLLVDVLRRVSSIDRFVRNGLW  134 (286)
Q Consensus        95 ~v~n~~~~~~~~vAE~~--------l~~~L~~~R~~~~~~~~~~~~~w  134 (286)
                      .|+|+|++|+.+||||+        +.+++...|++...+..+++|+|
T Consensus       138 ~V~n~pg~n~~SVAEha~~~~~~~~i~~il~~~r~~~~~~~~v~~G~~  185 (186)
T d2naca2         138 TVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL  185 (186)
T ss_dssp             EEEECTTTTHCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEE
T ss_pred             EEEECCCcCcHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhcccc
Confidence            99999999999999999        77888888998887777777776

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.81  E-value=2.5e-20  Score=146.83  Aligned_cols=108  Identities=20%  Similarity=0.233  Sum_probs=88.2

Q ss_pred             CCCCCCchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCC-CccEEEEcCCCCCcCChhHHh
Q 043239           12 GAPGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLP-ALEIVVGSTAGIDHVDLQECR   90 (286)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~-~Lk~i~~~~~G~d~id~~~~~   90 (286)
                      .+++...+.+++.|+++.+....+- ..+++.+.++++|++++++..++++++++++| +||+|++.|+|+||||+++|+
T Consensus         9 ~~~~~~~~~l~~~~~v~~~~~~~~~-s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~~~gvG~d~ID~~~a~   87 (129)
T d1gdha2           9 PLPEAAMARARESYDVIAHGDDPKI-TIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACK   87 (129)
T ss_dssp             CCCHHHHHHHHTTSEEEECCSTTCC-CHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESSCCTTBCHHHHH
T ss_pred             CCCHHHHHHHHcCCcEEEeCCCCCC-CHHHHHHHhcCCCEEEEcCCchhhhHHHhhhhhcceeeeecccCCccccHHHHH
Confidence            3566677889999998765522222 34445566789999998888899999999997 799999999999999999999


Q ss_pred             hcCeEEEecCCCCCcChHHHHHHHHHHHHh
Q 043239           91 RRGILVTNAGNAFSEDGADYVVGLLVDVLR  120 (286)
Q Consensus        91 ~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R  120 (286)
                      ++||+|+|+|++++.+|||+++++|+.+.+
T Consensus        88 ~~gI~V~ntpg~~~~aVAE~A~~~~~l~~~  117 (129)
T d1gdha2          88 ARGIKVGNAPHGATQAREDMAHQANDLIDA  117 (129)
T ss_dssp             HTTCEEECCCCSBHHHHHHHHHHHHHHHHH
T ss_pred             hCCCEEEECCCCCchHHHHHHHHHHHHHHH
Confidence            999999999999999999976655444443

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.80  E-value=3.8e-20  Score=146.11  Aligned_cols=111  Identities=22%  Similarity=0.236  Sum_probs=89.3

Q ss_pred             chhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEEE
Q 043239           18 NPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVT   97 (286)
Q Consensus        18 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~   97 (286)
                      ++.|++..++..++..++   ++...+...+++++++++..++++++++++|+||+|+++|+|+||||+++|+++||.|+
T Consensus        16 ~~~L~~~~~v~~~~~~s~---~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~~~Lk~I~~~g~G~d~iD~~~~~~~gI~v~   92 (133)
T d1mx3a2          16 MPILKDVATVAFCDAQST---QEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVC   92 (133)
T ss_dssp             HHHHTTTCEEEECCCSSG---GGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSSCCTTBCHHHHHHTTCEEE
T ss_pred             HHHhcccceEEEecCCCh---HHHHHHHhccCcEEEEEeCCCcCHHHHhhCCCCeEEEEcCCCcccEeeeeheeCCEEEE
Confidence            455666666655442222   33333344567888888889999999999999999999999999999999999999999


Q ss_pred             ecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCC
Q 043239           98 NAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPD  136 (286)
Q Consensus        98 n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~  136 (286)
                      |+|++++ ++|||+++++|++.|+++++.    +|.|++
T Consensus        93 n~p~~~~-~vAE~a~~lil~~~R~i~~a~----~g~~~~  126 (133)
T d1mx3a2          93 NVPAASV-YSEQASIEMREEAAREIRRAI----TGRIPD  126 (133)
T ss_dssp             CCCSTTH-CCHHHHHHHHHHHHHHHHHHH----HSCTTT
T ss_pred             cCCCCCc-hhHHHHHHHHHHHHhhHHHHH----hccccc
Confidence            9999887 579999999999999998764    455653

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.80  E-value=1.1e-20  Score=149.16  Aligned_cols=85  Identities=14%  Similarity=0.203  Sum_probs=78.1

Q ss_pred             HHhccCCceEEEEeCCCCCCHHHhccCC--CccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHH
Q 043239           42 LSRHASSVRAILCLGPSPLTSDTLSLLP--ALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVL  119 (286)
Q Consensus        42 ~~~~~~~~d~i~~~~~~~~~~~~l~~~~--~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~  119 (286)
                      ..+.++++|+|+++...++++++|+++|  +||+|++.|+|+||||+++|+++||+|+|+|++++.+|||++++++|++.
T Consensus        38 ~~~~~~~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~~vG~d~ID~~~a~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~  117 (131)
T d1dxya2          38 TVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLV  117 (131)
T ss_dssp             GGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCEEEEecCCCCCHHHHhhcccCCeEEEEEcccccccccccccccceEEEEeCCCCCchhHHHHHHHHHHHHH
Confidence            3455689999998878899999999876  79999999999999999999999999999999999999999999999999


Q ss_pred             hcchHHH
Q 043239          120 RRVSSID  126 (286)
Q Consensus       120 R~~~~~~  126 (286)
                      |++.+..
T Consensus       118 R~l~~~~  124 (131)
T d1dxya2         118 DFLTKGE  124 (131)
T ss_dssp             HHHHHSC
T ss_pred             cchHHHH
Confidence            9987653

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=2.2e-20  Score=147.61  Aligned_cols=111  Identities=17%  Similarity=0.094  Sum_probs=86.6

Q ss_pred             CCCCCchhhhCCCc-EEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhh
Q 043239           13 APGCFNPPLSERFT-LLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRR   91 (286)
Q Consensus        13 ~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~   91 (286)
                      +++...+.|++.+. ++.+. ....+ ++.+.+.++++|++++++.+++++++|+++|+||+|+++|+|+||||+++|++
T Consensus        13 i~~~a~~~L~~~g~~~v~~~-~~~~~-~~~l~~~~~~~d~ii~~~~~~i~~~~i~~~p~Lk~I~~~gvG~D~IDl~aa~~   90 (132)
T d1sc6a2          13 VHQKALESLRAAGYTNIEFH-KGALD-DEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAK   90 (132)
T ss_dssp             CCHHHHHHHHHTTCCCEEEC-SSCCC-HHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECSSCCTTBCHHHHHH
T ss_pred             CCHHHHHHHHhCCCEEEEeC-CCCCC-HHHHHHhhcCCcEEEEecccccChhhhhccccceeEEEecccccccCHHHHHh
Confidence            44555677877643 34333 22222 45566678999999988788999999999999999999999999999999999


Q ss_pred             cCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHH
Q 043239           92 RGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDR  127 (286)
Q Consensus        92 ~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~  127 (286)
                      +||.|+|+|++++.+|||+++.||+  .|++..+++
T Consensus        91 ~gI~V~ntp~~~~~svAe~~~lml~--~~~~~~~d~  124 (132)
T d1sc6a2          91 RGIPVFNAPFSSTQEAQENIGLEVA--GKLIKYSDN  124 (132)
T ss_dssp             TTCCEECCTTTCSHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             CCCEEEECCCCchhHHHHHHHHHHH--HHhhHHHhC
Confidence            9999999999999999998766554  444444443

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.75  E-value=1.9e-19  Score=142.58  Aligned_cols=81  Identities=15%  Similarity=0.139  Sum_probs=73.0

Q ss_pred             HHhccCCceEEEEeCCCCCCHHHhccCC--CccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHH
Q 043239           42 LSRHASSVRAILCLGPSPLTSDTLSLLP--ALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVL  119 (286)
Q Consensus        42 ~~~~~~~~d~i~~~~~~~~~~~~l~~~~--~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~  119 (286)
                      +.+.++++|+|++++..+++++++++++  +||+|+++|+|+||||+++|+++||.|+|+|++   ++||+++++||++.
T Consensus        39 ~~~~~~~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~vG~d~ID~~aa~~~gI~V~N~P~~---svae~a~~~ml~l~  115 (134)
T d1j4aa2          39 TVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKA  115 (134)
T ss_dssp             TGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCCS---CCBHHHHHHHHHHH
T ss_pred             HHHHhcCCCEEEEecCCCcCHHHHhhhcccCeeEEEEccCCcCccCHHHHHhCCeEEEECCCC---cHHHHHHHHHHHHH
Confidence            4567789999999888999999999765  699999999999999999999999999999986   68999999999999


Q ss_pred             hcchHH
Q 043239          120 RRVSSI  125 (286)
Q Consensus       120 R~~~~~  125 (286)
                      |+....
T Consensus       116 r~~~~~  121 (134)
T d1j4aa2         116 FDNNLE  121 (134)
T ss_dssp             HHHHHH
T ss_pred             HHHhHH
Confidence            987553

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.65  E-value=2.4e-17  Score=134.00  Aligned_cols=126  Identities=17%  Similarity=0.229  Sum_probs=107.9

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhccc--HHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMIN--KDV  221 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~--~~~  221 (286)
                      ++|||||+|.||..+|++|.+.|++|.+|||++++..     +.....+..|++++||+|++|+|..++.+.++.  ...
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~   80 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   80 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence            5899999999999999999999999999999876532     445578999999999999999999888888763  357


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCccc
Q 043239          222 MTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLH  274 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~  274 (286)
                      ++.+++|.++||+++..+-....+.+.+++.++......|...++.+..+.+.
T Consensus        81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~  133 (161)
T d1vpda2          81 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLS  133 (161)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEE
T ss_pred             hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeE
Confidence            88899999999999999999999999999999998877787766555544433

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.59  E-value=4e-16  Score=126.87  Aligned_cols=127  Identities=12%  Similarity=0.146  Sum_probs=108.0

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhccc--HHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMIN--KDV  221 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~--~~~  221 (286)
                      ++|||||+|.||.++|++|...|++|.+|||+.++..     +.....++.|++..+|+|++|+|..+..+.++.  ...
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~   81 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   81 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence            5899999999999999999999999999999876532     344567899999999999999998888777653  347


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCcccc
Q 043239          222 MTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHW  275 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~  275 (286)
                      ++.+++|.++||++...+-+...+.+.+++.++.+....|+..++.+.++.+..
T Consensus        82 ~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~  135 (162)
T d3cuma2          82 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTF  135 (162)
T ss_dssp             HHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEE
T ss_pred             cccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEE
Confidence            888999999999999999999999999999999988888887776655554433

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.9e-16  Score=124.75  Aligned_cols=117  Identities=16%  Similarity=0.216  Sum_probs=93.7

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----CcccccCHHHhhcCCCEEEEeccCChhhhhccc
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----SYPFYANVSGLAADSDVLIVCCALTEETHHMIN  218 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~  218 (286)
                      +..|+||+++|+|||.+|+.+|++++++|++|.++++.+-+..    ......++++++..+|+|+++..    ++++|+
T Consensus        19 ~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~~~~~a~~~adivvtaTG----n~~vI~   94 (163)
T d1li4a1          19 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTTTG----CIDIIL   94 (163)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECSS----CSCSBC
T ss_pred             CceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEeeehhhhhhhccEEEecCC----Cccchh
Confidence            3468999999999999999999999999999999999775432    22235689999999999988743    678999


Q ss_pred             HHHHhcCCCCcEEEEcC-CCcccCHHHHHHHHHhCCeeEEEeeccC
Q 043239          219 KDVMTALGKEGVIINVG-RGALIDEKELVHFLVRGSLVELVLMCLR  263 (286)
Q Consensus       219 ~~~l~~mk~g~ilvn~s-rg~~vd~~al~~al~~~~i~ga~lDv~~  263 (286)
                      .+.|+.||+|+++.|++ +..-||.++|.+...+.+-....+|.|+
T Consensus        95 ~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~y~  140 (163)
T d1li4a1          95 GRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYR  140 (163)
T ss_dssp             HHHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHHhccCCeEEEEeccccceecHHHHhhccceeeeecCCeeEEE
Confidence            99999999999999996 6677999999875444333333455444

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.46  E-value=4.1e-14  Score=116.18  Aligned_cols=120  Identities=11%  Similarity=0.098  Sum_probs=100.9

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-------------CcccccCHHHhhcCCCEEEEeccCChhhh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------------SYPFYANVSGLAADSDVLIVCCALTEETH  214 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~  214 (286)
                      ..+|||||+|.||.+||++|.+.|++|++|||++++..             +.....++.+.+..+|++++++|..+.+.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~   81 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD   81 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHH
Confidence            46899999999999999999999999999999886422             12234466678889999999999988887


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCC
Q 043239          215 HMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMC  268 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~  268 (286)
                      .+. ...++.+++|.++||+++..+-+...+.+.+.+..+......|....+.+
T Consensus        82 ~v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A  134 (176)
T d2pgda2          82 NFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGA  134 (176)
T ss_dssp             HHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHH
T ss_pred             HHH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccCcccc
Confidence            765 56888999999999999999999999999999999988777777665433

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.39  E-value=2.4e-13  Score=110.10  Aligned_cols=101  Identities=18%  Similarity=0.277  Sum_probs=76.1

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----C-cccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----S-YPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM  222 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~-~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l  222 (286)
                      ++|||||+|.||+++|+.|+..|++|++|||+.+...     + .....+..+.+++||+|++++|. ..+..++ ++..
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~-~~~~~vl-~~l~   78 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPI-QLILPTL-EKLI   78 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCH-HHHHHHH-HHHG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcH-hhhhhhh-hhhh
Confidence            5899999999999999999999999999999865321     2 12233445788999999999994 4666666 4678


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          223 TALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       223 ~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      +.++++.+++|++......... ...+...
T Consensus        79 ~~l~~~~iv~~~~s~~~~~~~~-~~~~~~~  107 (165)
T d2f1ka2          79 PHLSPTAIVTDVASVKTAIAEP-ASQLWSG  107 (165)
T ss_dssp             GGSCTTCEEEECCSCCHHHHHH-HHHHSTT
T ss_pred             hhcccccceeeccccchHHHHH-HHHhhcc
Confidence            8899999999998765443333 3333333

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.37  E-value=4.6e-13  Score=107.52  Aligned_cols=99  Identities=20%  Similarity=0.329  Sum_probs=83.8

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-----CCcccccCHHHhhcCCCEEEEeccCChhhhhccc
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGLAADSDVLIVCCALTEETHHMIN  218 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~  218 (286)
                      ..++||++.|+|||.+|+.+|++++++|++|+++...+-..     +++. ..+++|+++.+|+++++..    ..++|+
T Consensus        19 ~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~-v~~~~~a~~~aDi~vTaTG----n~~vI~   93 (163)
T d1v8ba1          19 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFN-VVTLDEIVDKGDFFITCTG----NVDVIK   93 (163)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCE-ECCHHHHTTTCSEEEECCS----SSSSBC
T ss_pred             ceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCc-cCchhHccccCcEEEEcCC----CCcccc
Confidence            34899999999999999999999999999999999877442     2443 5799999999999999865    466899


Q ss_pred             HHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 043239          219 KDVMTALGKEGVIINVGRGAL-IDEKELVH  247 (286)
Q Consensus       219 ~~~l~~mk~g~ilvn~srg~~-vd~~al~~  247 (286)
                      .++|.+||+|+++.|++.... ||-++|.+
T Consensus        94 ~~h~~~MKdgaIl~N~GHfd~EIdv~~L~~  123 (163)
T d1v8ba1          94 LEHLLKMKNNAVVGNIGHFDDEIQVNELFN  123 (163)
T ss_dssp             HHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred             HHHHHHhhCCeEEEeccccchhhhhHHHHh
Confidence            999999999999999987754 66666653

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.34  E-value=1.3e-13  Score=110.85  Aligned_cols=125  Identities=16%  Similarity=0.162  Sum_probs=99.8

Q ss_pred             EEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcC
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTAL  225 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~m  225 (286)
                      +|||||+|.||..||++|...|+.+ +|+|+.++..    ......+..+.+.++|++++++|..++..... ...++.+
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~-~~l~~~~   79 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVA-EALYPYL   79 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHH-HHHTTTC
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhh-ccccccc
Confidence            7999999999999999999988765 6777665432    11122334466678999999999877766554 5688999


Q ss_pred             CCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCccccc
Q 043239          226 GKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWI  276 (286)
Q Consensus       226 k~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~  276 (286)
                      +++.++||+++..+-....+.+.+++.++......|+..++.+.++.|..+
T Consensus        80 ~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVsGg~~~A~~G~L~~~  130 (156)
T d2cvza2          80 REGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVM  130 (156)
T ss_dssp             CTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEE
T ss_pred             cccccccccccCCHHHHHHHHHHHHHcCCeEEeccccCchhhhccCCEEEE
Confidence            999999999999999999999999999999988888888776666655544

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.22  E-value=3.6e-12  Score=101.78  Aligned_cols=101  Identities=14%  Similarity=0.221  Sum_probs=79.4

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMT  223 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~  223 (286)
                      ++|||||+|+||+.+|++|+..|++|++++++..+..     +.....++.|++++||+|++|+|...... .+ .....
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~-~~-~~~~~   78 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALG-AA-RRAGR   78 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHH-HH-HHHHT
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHH-HH-Hhhcc
Confidence            5899999999999999999999999999998765432     23345688999999999999999654433 22 22333


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 043239          224 ALGKEGVIINVGRGALIDEKELVHFLVRGS  253 (286)
Q Consensus       224 ~mk~g~ilvn~srg~~vd~~al~~al~~~~  253 (286)
                      .  .+.++||++..+....+.+.+.+++.+
T Consensus        79 ~--~~~~~id~st~~p~~~~~l~~~~~~~~  106 (152)
T d1i36a2          79 H--VRGIYVDINNISPETVRMASSLIEKGG  106 (152)
T ss_dssp             T--CCSEEEECSCCCHHHHHHHHHHCSSSE
T ss_pred             c--CCceeeccCcCCHHHHHHHHHHHhccC
Confidence            3  367899999999988899998887654

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.22  E-value=5.5e-12  Score=103.16  Aligned_cols=122  Identities=16%  Similarity=0.225  Sum_probs=98.3

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----C--------cccccCHH---HhhcCCCEEEEeccCChh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----S--------YPFYANVS---GLAADSDVLIVCCALTEE  212 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~--------~~~~~~l~---e~l~~aDiV~~~lp~~~~  212 (286)
                      ++|||||+|.||..||++|...|++|++|||++++..     +        .....+.+   ..+..++.+..+++....
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence            6899999999999999999999999999999876532     1        11123333   356788999999987777


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCC
Q 043239          213 THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRS  271 (286)
Q Consensus       213 t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~  271 (286)
                      ....+ ......++++.++||+++...-+...+.+.|.+..+......|+..++.+.+.
T Consensus        82 ~~~~~-~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g  139 (178)
T d1pgja2          82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKG  139 (178)
T ss_dssp             HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHC
T ss_pred             hhhhh-hhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCC
Confidence            77666 45677899999999999999999999999999999998888888876544443

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.18  E-value=2.9e-11  Score=97.78  Aligned_cols=106  Identities=16%  Similarity=0.135  Sum_probs=78.2

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC-----Cc--ccccCHHH-hhcCCCEEEEeccCChhhhhccc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV-----SY--PFYANVSG-LAADSDVLIVCCALTEETHHMIN  218 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~-----~~--~~~~~l~e-~l~~aDiV~~~lp~~~~t~~~i~  218 (286)
                      ++|+|||+|.||.++|+.|+..|+  +|++||++.+...     +.  ....+..+ ....+|+|++|+|. .++..++ 
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~-~~~~~vl-   79 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPV-RTFREIA-   79 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCH-HHHHHHH-
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCc-hhhhhhh-
Confidence            479999999999999999998885  7999999875422     11  12233333 33579999999994 3455555 


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeE
Q 043239          219 KDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVE  256 (286)
Q Consensus       219 ~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~g  256 (286)
                      ++..+.++++++++|++.....-.+++.+.+...-+.+
T Consensus        80 ~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~  117 (171)
T d2g5ca2          80 KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGG  117 (171)
T ss_dssp             HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECE
T ss_pred             hhhhccccccccccccccccHHHHHHHHHhhccccccc
Confidence            45778899999999999877666777777777654443

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.09  E-value=9.8e-11  Score=93.43  Aligned_cols=95  Identities=20%  Similarity=0.351  Sum_probs=76.8

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM  222 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l  222 (286)
                      ++|||||+|+||+++++.|...|.+|++++|+.++..      +.....+.++++++||+|++|++.  +   . -.+.+
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavkp--~---~-~~~vl   74 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKP--Q---L-FETVL   74 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSCG--G---G-HHHHH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecch--H---h-HHHHh
Confidence            5899999999999999999999999999999865432      445567899999999999999962  2   1 24677


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239          223 TALGKEGVIINVGRGALIDEKELVHFLVR  251 (286)
Q Consensus       223 ~~mk~g~ilvn~srg~~vd~~al~~al~~  251 (286)
                      +.++++.++|++..|  +..+.|.+.+..
T Consensus        75 ~~l~~~~~iis~~ag--i~~~~l~~~l~~  101 (152)
T d2ahra2          75 KPLHFKQPIISMAAG--ISLQRLATFVGQ  101 (152)
T ss_dssp             TTSCCCSCEEECCTT--CCHHHHHHHHCT
T ss_pred             hhcccceeEeccccc--ccHHHHHhhhcc
Confidence            889999999999776  456667777654

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.07  E-value=1.9e-10  Score=91.28  Aligned_cols=110  Identities=16%  Similarity=0.205  Sum_probs=80.6

Q ss_pred             CCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhc
Q 043239          146 LGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTA  224 (286)
Q Consensus       146 l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~  224 (286)
                      ..-++|+||| +|.||+++|++|++.|++|.+||++..        .+.++.++.+|++++++|.. .+.. +-.+.++.
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~--------~~~~~~~~~~~~v~~~~~~~-~~~~-v~~~~~~~   76 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW--------AVAESILANADVVIVSVPIN-LTLE-TIERLKPY   76 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG--------GGHHHHHTTCSEEEECSCGG-GHHH-HHHHHGGG
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc--------cccchhhhhccccccccchh-hhee-eeeccccc
Confidence            3456999999 999999999999999999999998653        34567789999999999854 3333 34678899


Q ss_pred             CCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCC
Q 043239          225 LGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLM  267 (286)
Q Consensus       225 mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~  267 (286)
                      ++++++++|++.-..--.+++.+.+.. ++.+ .=.++.+|..
T Consensus        77 ~~~~~iiiD~~Svk~~~~~~~~~~~~~-~~v~-~hP~~Gp~~~  117 (152)
T d2pv7a2          77 LTENMLLADLTSVKREPLAKMLEVHTG-AVLG-LHPMFGADIA  117 (152)
T ss_dssp             CCTTSEEEECCSCCHHHHHHHHHHCSS-EEEE-EEECSCTTCS
T ss_pred             ccCCceEEEecccCHHHHHHHHHHccC-CEEE-ecccCCCccc
Confidence            999999999987665545555554433 2211 2355655543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.98  E-value=5.5e-10  Score=90.58  Aligned_cols=104  Identities=17%  Similarity=0.181  Sum_probs=77.8

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC--------------------CcccccCHHHhhcCCCEEEEec
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV--------------------SYPFYANVSGLAADSDVLIVCC  207 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------------------~~~~~~~l~e~l~~aDiV~~~l  207 (286)
                      .|||+|||.|.||..+|..|...|++|.+|+|+++...                    ......++.|.++++|+|++++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v   80 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   80 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence            47999999999999999999999999999999754311                    0112357899999999999999


Q ss_pred             cCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239          208 ALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       208 p~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i  254 (286)
                      |. ...+.++ ++..++++++.+++-. .|....+..+.+.+.....
T Consensus        81 ~~-~~~~~~~-~~i~~~l~~~~~iv~~-~g~~~~~~~~~~~~~~~~~  124 (184)
T d1bg6a2          81 PA-IHHASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRENGA  124 (184)
T ss_dssp             CG-GGHHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHHTTC
T ss_pred             ch-hHHHHHH-HHhhhccCCCCEEEEe-CCCCccHHHHHHHHHHhcC
Confidence            84 4445444 5677889999987754 4544555566666666543

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=98.85  E-value=2.5e-10  Score=90.63  Aligned_cols=84  Identities=15%  Similarity=-0.022  Sum_probs=58.4

Q ss_pred             EEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcC
Q 043239          151 VGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTAL  225 (286)
Q Consensus       151 vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~m  225 (286)
                      |||||+|+||+.+++.|+..+..+.+|+|+.++..     ....+.++.++++++|+|++|+|+. ..     .+.++.+
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~-~i-----~~v~~~l   75 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDR-YI-----KTVANHL   75 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTT-TH-----HHHHTTT
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccch-hh-----hHHHhhh
Confidence            79999999999999999874444468999877542     2334567889999999999999953 32     2345556


Q ss_pred             -CCCcEEEEcCCCccc
Q 043239          226 -GKEGVIINVGRGALI  240 (286)
Q Consensus       226 -k~g~ilvn~srg~~v  240 (286)
                       +++.++|+++.+...
T Consensus        76 ~~~~~ivi~~s~~~~~   91 (153)
T d2i76a2          76 NLGDAVLVHCSGFLSS   91 (153)
T ss_dssp             CCSSCCEEECCSSSCG
T ss_pred             cccceeeeecccchhh
Confidence             478999999877554

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.80  E-value=4.7e-09  Score=84.12  Aligned_cols=94  Identities=27%  Similarity=0.357  Sum_probs=73.3

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC------C--cccccCHHHhhcCCCEEEEeccCChhhhh
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV------S--YPFYANVSGLAADSDVLIVCCALTEETHH  215 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~------~--~~~~~~l~e~l~~aDiV~~~lp~~~~t~~  215 (286)
                      .+.+++|.|||+|.||+.+++.|...|. ++++++|+.++..      +  ...+.++.+.+.++|+|++|++   ....
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~ats---s~~~   97 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATA---APHP   97 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCS---SSSC
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecC---CCCc
Confidence            4789999999999999999999999998 6999999876532      2  2345688888999999999975   3466


Q ss_pred             cccHHHHhcC------CCCcEEEEcCCCcccC
Q 043239          216 MINKDVMTAL------GKEGVIINVGRGALID  241 (286)
Q Consensus       216 ~i~~~~l~~m------k~g~ilvn~srg~~vd  241 (286)
                      +|+++.++..      ++..+|||+|...-||
T Consensus        98 ii~~~~i~~~~~~r~~~~~~~iiDlavPr~vd  129 (159)
T d1gpja2          98 VIHVDDVREALRKRDRRSPILIIDIANPRDVE  129 (159)
T ss_dssp             CBCHHHHHHHHHHCSSCCCEEEEECCSSCSBC
T ss_pred             cccHhhhHHHHHhcccCCCeEEEeecCCCCcC
Confidence            7887766432      2345999998665444

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.80  E-value=1.6e-09  Score=87.17  Aligned_cols=91  Identities=20%  Similarity=0.253  Sum_probs=74.3

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCC--------c----ccccCHHHhhcCCCEEEEecc-CCh
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS--------Y----PFYANVSGLAADSDVLIVCCA-LTE  211 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~--------~----~~~~~l~e~l~~aDiV~~~lp-~~~  211 (286)
                      .+...+|.|||.|..|..-++.++.+|.+|.++|.+.+....        .    .....+++.+++||+|+.++- ...
T Consensus        29 gv~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~  108 (168)
T d1pjca1          29 GVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR  108 (168)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred             CCCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence            356789999999999999999999999999999987654321        1    112357788999999988743 244


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcC
Q 043239          212 ETHHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       212 ~t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      ....+|.+++++.||||+++||++
T Consensus       109 ~aP~lIt~~mv~~Mk~GSVIVDva  132 (168)
T d1pjca1         109 RAPILVPASLVEQMRTGSVIVDVA  132 (168)
T ss_dssp             SCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             ccCeeecHHHHhhcCCCcEEEEee
Confidence            567899999999999999999997

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=1.7e-08  Score=80.13  Aligned_cols=87  Identities=22%  Similarity=0.265  Sum_probs=67.4

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCC-------c-----ccccCHHHhhcCCCEEEEeccCChhhhhc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS-------Y-----PFYANVSGLAADSDVLIVCCALTEETHHM  216 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~-------~-----~~~~~l~e~l~~aDiV~~~lp~~~~t~~~  216 (286)
                      |+|+|||.|.||..+|..|...|++|..++|+.+....       .     ....+..+.+..+|+|+++++. .++...
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka-~~~~~~   79 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA-WQVSDA   79 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG-GGHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecc-cchHHH
Confidence            68999999999999999999999999999998865321       1     1123455677899999999984 455554


Q ss_pred             ccHHHHhcCCCCcEEEEcCCC
Q 043239          217 INKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       217 i~~~~l~~mk~g~ilvn~srg  237 (286)
                      + +...+.+++++.++.+..|
T Consensus        80 ~-~~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          80 V-KSLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             H-HHHHTTSCTTSCEEEECSS
T ss_pred             H-HhhccccCcccEEeeccCc
Confidence            3 4556677888988888766

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.64  E-value=6.5e-09  Score=82.39  Aligned_cols=93  Identities=20%  Similarity=0.271  Sum_probs=66.1

Q ss_pred             CEEEEEcCChHHHHHHHHhccCC-CEEEEECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFG-CSIAYTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g-~~V~~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      ++|||||+|+||+++++.|...| .+|.+++|+.++..      +.....+.++ +++||+|+++++. ....     +.
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavkP-~~~~-----~v   73 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVKP-QDME-----AA   73 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSCH-HHHH-----HH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEecCH-HHHH-----Hh
Confidence            58999999999999999887666 79999999876432      3333445544 5789999999972 2222     33


Q ss_pred             HhcC-CCCcEEEEcCCCcccCHHHHHHHHH
Q 043239          222 MTAL-GKEGVIINVGRGALIDEKELVHFLV  250 (286)
Q Consensus       222 l~~m-k~g~ilvn~srg~~vd~~al~~al~  250 (286)
                      ++.+ +.+.++|++..|-  ..+.+.+.+.
T Consensus        74 ~~~l~~~~~~viS~~ag~--~~~~l~~~l~  101 (152)
T d1yqga2          74 CKNIRTNGALVLSVAAGL--SVGTLSRYLG  101 (152)
T ss_dssp             HTTCCCTTCEEEECCTTC--CHHHHHHHTT
T ss_pred             HHHHhhcccEEeecccCC--CHHHHHHHhC
Confidence            4444 3468999987775  4556767664

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.63  E-value=1.1e-08  Score=82.17  Aligned_cols=85  Identities=22%  Similarity=0.296  Sum_probs=69.3

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC------CCcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG------VSYPFYANVSGLAADSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~------~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      |++++|+|||||.-|++-|.+|+..|++|.+--|...+.      .++ ...+++|+.+++|+|++.+|+. ....+..+
T Consensus        14 ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf-~v~~~~eA~~~aDiim~L~PD~-~q~~vy~~   91 (182)
T d1np3a2          14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGL-KVADVKTAVAAADVVMILTPDE-FQGRLYKE   91 (182)
T ss_dssp             HHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTC-EEECHHHHHHTCSEEEECSCHH-HHHHHHHH
T ss_pred             HCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhcc-ccccHHHHhhhcCeeeeecchH-HHHHHHHH
Confidence            789999999999999999999999999998776654432      133 3568999999999999999943 34556667


Q ss_pred             HHHhcCCCCcEEE
Q 043239          220 DVMTALGKEGVII  232 (286)
Q Consensus       220 ~~l~~mk~g~ilv  232 (286)
                      +..++||+|+.+.
T Consensus        92 ~I~p~lk~g~~L~  104 (182)
T d1np3a2          92 EIEPNLKKGATLA  104 (182)
T ss_dssp             HTGGGCCTTCEEE
T ss_pred             hhhhhcCCCcEEE
Confidence            8999999998754

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.61  E-value=3.6e-08  Score=80.17  Aligned_cols=95  Identities=18%  Similarity=0.227  Sum_probs=72.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc-----------------------------cc
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF-----------------------------YA  191 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~-----------------------------~~  191 (286)
                      +..-+|.|||.|..|..-++.++++|.+|.++|.+.....     ....                             ..
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            5566999999999999999999999999999998776422     0000                             01


Q ss_pred             CHHHhhcCCCEEEEe--ccCChhhhhcccHHHHhcCCCCcEEEEcC--CCcccC
Q 043239          192 NVSGLAADSDVLIVC--CALTEETHHMINKDVMTALGKEGVIINVG--RGALID  241 (286)
Q Consensus       192 ~l~e~l~~aDiV~~~--lp~~~~t~~~i~~~~l~~mk~g~ilvn~s--rg~~vd  241 (286)
                      .+.+.+++||+|+.+  +|. .....+|++++++.||||+++||++  +|+.+.
T Consensus       107 ~l~~~l~~aDlVI~talipG-~~aP~lit~~mv~~Mk~GSVIVDvaidqGGn~E  159 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPG-KPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCP  159 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTT-SCCCCCSCHHHHTTSCTTCEEEETTGGGTCSST
T ss_pred             HHHHHHHhhhhheeeeecCC-cccceeehHHHHHhcCCCcEEEEEeecCCCccc
Confidence            244568899999876  443 3456689999999999999999997  555443

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.54  E-value=2.5e-08  Score=81.25  Aligned_cols=88  Identities=16%  Similarity=0.287  Sum_probs=65.2

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-----------C--C-------cccccCHHHhhcCCCEEEEecc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----------V--S-------YPFYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----------~--~-------~~~~~~l~e~l~~aDiV~~~lp  208 (286)
                      |+|+|||.|.+|.++|..|...|.+|..|.|..++.           .  .       .....+++++++++|+|++++|
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp   80 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence            689999999999999999999999999998743210           0  0       1124688899999999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 043239          209 LTEETHHMINKDVMTALGKEGVIINVGRGAL  239 (286)
Q Consensus       209 ~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~  239 (286)
                       +...+.++ ++..+.+++. .+|.++.|-.
T Consensus        81 -s~~~~~~~-~~l~~~l~~~-~ii~~tkg~~  108 (180)
T d1txga2          81 -TDGVLPVM-SRILPYLKDQ-YIVLISKGLI  108 (180)
T ss_dssp             -GGGHHHHH-HHHTTTCCSC-EEEECCCSEE
T ss_pred             -hhhhHHHH-Hhhccccccc-eecccccCcc
Confidence             45556555 3466667665 4555666643

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.45  E-value=1.3e-07  Score=78.16  Aligned_cols=100  Identities=15%  Similarity=0.127  Sum_probs=72.6

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC------------C-------------CcccccCHHHhhcCCCEE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG------------V-------------SYPFYANVSGLAADSDVL  203 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~------------~-------------~~~~~~~l~e~l~~aDiV  203 (286)
                      |+|+|||+|.+|.++|..|+..|++|++||.+.+..            .             ......++.+++++||++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i   80 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence            689999999999999999999999999999765321            0             012346788999999999


Q ss_pred             EEeccCChh---------hhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 043239          204 IVCCALTEE---------THHMIN--KDVMTALGKEGVIINVGRGALIDEKELVHF  248 (286)
Q Consensus       204 ~~~lp~~~~---------t~~~i~--~~~l~~mk~g~ilvn~srg~~vd~~al~~a  248 (286)
                      ++|+|....         ...++.  ...+...+++.++|.-|+..+-..+.+...
T Consensus        81 ~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~  136 (202)
T d1mv8a2          81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIP  136 (202)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHH
T ss_pred             EEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhh
Confidence            999984211         111221  124556678999999998877666666544

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.44  E-value=1.8e-08  Score=82.97  Aligned_cols=91  Identities=14%  Similarity=0.172  Sum_probs=65.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-------------C------CcccccCHHHhhcCCCEEEEe
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-------------V------SYPFYANVSGLAADSDVLIVC  206 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-------------~------~~~~~~~l~e~l~~aDiV~~~  206 (286)
                      ++-++|+|||.|.+|.++|..|...|++|..|.|+.+..             .      ......+++++++++|+|+++
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiia   84 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFV   84 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEEC
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEc
Confidence            344579999999999999999999999999999865311             1      122346899999999999999


Q ss_pred             ccCChhhhhcccHH---H-HhcCCCCcEEEEcCCC
Q 043239          207 CALTEETHHMINKD---V-MTALGKEGVIINVGRG  237 (286)
Q Consensus       207 lp~~~~t~~~i~~~---~-l~~mk~g~ilvn~srg  237 (286)
                      +| +...+.++.+-   . ....+++..+|+++.|
T Consensus        85 vP-s~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG  118 (189)
T d1n1ea2          85 IP-TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG  118 (189)
T ss_dssp             SC-HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             Cc-HHHHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence            99 44444444221   0 1123566778888766

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.9e-07  Score=76.76  Aligned_cols=114  Identities=10%  Similarity=0.115  Sum_probs=83.5

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------------C------------------cccccCHH
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------S------------------YPFYANVS  194 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~------------------~~~~~~l~  194 (286)
                      ++|+|||.|.||+.+|..+...|++|..+|++++...                +                  .....++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~   84 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   84 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence            6999999999999999999999999999999875311                0                  11245778


Q ss_pred             HhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239          195 GLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS  265 (286)
Q Consensus       195 e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e  265 (286)
                      +.+++||+|+=++|..-+.+.-+-++.-+.++++++|...+.  .+.-..|...+.. .=+..++=.|.+.
T Consensus        85 ~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS--~l~i~~la~~~~~-p~r~ig~HffnP~  152 (192)
T d1f0ya2          85 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTS--SLQITSIANATTR-QDRFAGLHFFNPV  152 (192)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCS--SSCHHHHHTTSSC-GGGEEEEEECSST
T ss_pred             hhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCc--ccccchhhhhccC-HhHEEeecccccc
Confidence            889999999999998877776666667677889888765533  3445556665543 4444556555443

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.39  E-value=2.5e-07  Score=76.60  Aligned_cols=104  Identities=18%  Similarity=0.280  Sum_probs=79.2

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----CcccccCHHHhhc-CCCEEEEeccCChhhhhcccH
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----SYPFYANVSGLAA-DSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----~~~~~~~l~e~l~-~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      +|.|+||+|-|+|++|+.+|+.|...|++|+++|.......    ......+.++++. +||+++-|.     +.+.|++
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~~~~~~~~~~~DI~iPcA-----~~~~I~~   98 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPCA-----MGGVITT   98 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEECS-----CSCCBCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccccCccccccccceeeeccc-----ccccccH
Confidence            59999999999999999999999999999999987654321    1112346677765 699888663     5678999


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          220 DVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       220 ~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      +..+.++- .+++-.+.+.+.+++ ..+.|.+++|.
T Consensus        99 ~~a~~i~a-k~i~e~AN~p~~~~~-~~~~L~~rgI~  132 (201)
T d1c1da1          99 EVARTLDC-SVVAGAANNVIADEA-ASDILHARGIL  132 (201)
T ss_dssp             HHHHHCCC-SEECCSCTTCBCSHH-HHHHHHHTTCE
T ss_pred             HHHhhhhh-heeeccCCCCcchhh-HHHHhcccceE
Confidence            99999974 466777777776664 45677777774

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.36  E-value=4.1e-07  Score=75.38  Aligned_cols=85  Identities=15%  Similarity=0.282  Sum_probs=63.6

Q ss_pred             CCC-CEEEEEcCChHHHHHHHHhcc------CCCEEEEECCCCCCC------CCcc----cccCHHHhhcCCCEEEEecc
Q 043239          146 LGG-KRVGIVGLGSIGSEVAKRLVP------FGCSIAYTSRKKKPG------VSYP----FYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       146 l~g-~~vgIiG~G~iG~~~A~~l~~------~g~~V~~~~r~~~~~------~~~~----~~~~l~e~l~~aDiV~~~lp  208 (286)
                      ++| |+|+|||||.-|++-|..|+.      .|.+|.+--|...+.      .++.    ...+..|+.++||+|++.+|
T Consensus        41 ~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlP  120 (226)
T d1qmga2          41 FKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS  120 (226)
T ss_dssp             TTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSC
T ss_pred             hcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecc
Confidence            678 899999999999999999998      456675443333221      2332    14578899999999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEE
Q 043239          209 LTEETHHMINKDVMTALGKEGVII  232 (286)
Q Consensus       209 ~~~~t~~~i~~~~l~~mk~g~ilv  232 (286)
                      +..+ ..+. ++..++||+|+.+.
T Consensus       121 De~Q-~~vy-~~I~p~Lk~G~~L~  142 (226)
T d1qmga2         121 DSAQ-ADNY-EKVFSHMKPNSILG  142 (226)
T ss_dssp             HHHH-HHHH-HHHHHHSCTTCEEE
T ss_pred             hHHH-HHHH-HHHHHhcCCCceee
Confidence            6544 3355 47899999998765

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.28  E-value=9.1e-08  Score=71.83  Aligned_cols=89  Identities=19%  Similarity=0.190  Sum_probs=64.9

Q ss_pred             CCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-------Ccc---cccCHHHhhcCCCEEEEeccCC
Q 043239          141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------SYP---FYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       141 ~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------~~~---~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      +..-+++|++|+|||.|.+|..-|+.|..+|++|+++++...+..       ...   ...+ ++.+.++++|+.+..  
T Consensus         5 Pi~l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~-~~dl~~~~lv~~at~--   81 (113)
T d1pjqa1           5 PIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFD-ETLLDSCWLAIAATD--   81 (113)
T ss_dssp             EEEECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCC-GGGGTTCSEEEECCS--
T ss_pred             ceEEEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCC-HHHhCCCcEEeecCC--
Confidence            445679999999999999999999999999999999987664321       111   0112 245678898887753  


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcC
Q 043239          211 EETHHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       211 ~~t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                         ...++++....+|+..++||+.
T Consensus        82 ---d~~~n~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          82 ---DDTVNQRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             ---CHHHHHHHHHHHHHTTCEEEET
T ss_pred             ---CHHHHHHHHHHHHHcCCEEEeC
Confidence               2234566777778888899975

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.23  E-value=1.7e-07  Score=76.61  Aligned_cols=114  Identities=12%  Similarity=0.125  Sum_probs=81.0

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------------C-cc-----------cccCHHHhhcCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------S-YP-----------FYANVSGLAADS  200 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~-~~-----------~~~~l~e~l~~a  200 (286)
                      ++|+|||.|.||+.+|..+...|++|..+|++.+...                + ..           ...+..+.+.+|
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a   84 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNV   84 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGGC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccccccc
Confidence            4799999999999999999999999999999865311                0 00           011222357899


Q ss_pred             CEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239          201 DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS  265 (286)
Q Consensus       201 DiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e  265 (286)
                      |+|+=++|.+-+.+.-+-++.-+.++++++|...+.+  +.-..|.+.+.. .=+..++=.|.+.
T Consensus        85 dlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~--l~i~~la~~~~~-p~r~~g~Hf~nP~  146 (186)
T d1wdka3          85 DLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST--ISISLLAKALKR-PENFVGMHFFNPV  146 (186)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS--SCHHHHGGGCSC-GGGEEEEECCSST
T ss_pred             ceeeeeecchHHHHHHHHHHHHhhcCCCeeEEecccc--ccHHHHHHhccC-chheEeeccccCc
Confidence            9999999988887776667777888999988766444  445666666543 3344555555443

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=98.16  E-value=2.9e-06  Score=67.67  Aligned_cols=79  Identities=23%  Similarity=0.373  Sum_probs=65.4

Q ss_pred             cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.++.||++.|||-+. +|++++..|...|++|+..+..         ..++.+.+++||+|+.++.    ..+++..+ 
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~---------t~~l~~~~~~ADivI~a~G----~p~~i~~~-   97 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRF---------TKNLRHHVENADLLIVAVG----KPGFIPGD-   97 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSS---------CSCHHHHHHHCSEEEECSC----CTTCBCTT-
T ss_pred             CcccccceEEEEeccccccHHHHHHHHHhhccccccccc---------cchhHHHHhhhhHhhhhcc----Cccccccc-
Confidence            3468999999999988 9999999999999999887643         2468888999999999986    34667655 


Q ss_pred             HhcCCCCcEEEEcCCC
Q 043239          222 MTALGKEGVIINVGRG  237 (286)
Q Consensus       222 l~~mk~g~ilvn~srg  237 (286)
                        .+|+|+++||++--
T Consensus        98 --~vk~g~vvIDvGi~  111 (166)
T d1b0aa1          98 --WIKEGAIVIDVGIN  111 (166)
T ss_dssp             --TSCTTCEEEECCCE
T ss_pred             --ccCCCcEEEecCce
Confidence              46899999999744

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.16  E-value=9.3e-07  Score=63.79  Aligned_cols=62  Identities=18%  Similarity=0.229  Sum_probs=45.5

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------Cccc-c-cCHHHhhcCCCEEEEe
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SYPF-Y-ANVSGLAADSDVLIVC  206 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~~~-~-~~l~e~l~~aDiV~~~  206 (286)
                      +++||+|+|+|+|..|.++|+.|...|++|+++|.+.....      .... . ..-++.+.+.|+|+++
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~S   71 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVAS   71 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEEC
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEEC
Confidence            47899999999999999999999999999999997655432      1110 1 1113456677877765

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=5.1e-06  Score=66.54  Aligned_cols=81  Identities=17%  Similarity=0.345  Sum_probs=66.3

Q ss_pred             cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      +.+++||++.|||-+. +|+++|..|...|+.|+.++..         ..++.+.++++|+++++++    ..+++..+ 
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~---------t~~l~~~~~~aDivi~a~G----~~~~i~~~-   99 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK---------TAHLDEEVNKGDILVVATG----QPEMVKGE-   99 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------CSSHHHHHTTCSEEEECCC----CTTCBCGG-
T ss_pred             CcccccceEEEEecCCccchHHHHHHHhccCceEEEecc---------cccHHHHHhhccchhhccc----cccccccc-
Confidence            4579999999999977 8999999999999999988753         2467788999999999987    35567655 


Q ss_pred             HhcCCCCcEEEEcCCCcc
Q 043239          222 MTALGKEGVIINVGRGAL  239 (286)
Q Consensus       222 l~~mk~g~ilvn~srg~~  239 (286)
                        ++|+|+++||++--..
T Consensus       100 --~vk~g~iviDvgi~~~  115 (170)
T d1a4ia1         100 --WIKPGAIVIDCGINYV  115 (170)
T ss_dssp             --GSCTTCEEEECCCBC-
T ss_pred             --cccCCCeEeccCcccc
Confidence              4689999999975443

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.08  E-value=2.7e-06  Score=68.34  Aligned_cols=95  Identities=20%  Similarity=0.179  Sum_probs=67.3

Q ss_pred             CCcccCCCCEEEEEcCChH-HHHHHHHhccCCCEEEEECCCCCCC----CCc------------ccccCHHHhhcCCCEE
Q 043239          141 PLGSTLGGKRVGIVGLGSI-GSEVAKRLVPFGCSIAYTSRKKKPG----VSY------------PFYANVSGLAADSDVL  203 (286)
Q Consensus       141 ~~~~~l~g~~vgIiG~G~i-G~~~A~~l~~~g~~V~~~~r~~~~~----~~~------------~~~~~l~e~l~~aDiV  203 (286)
                      ..|.++.||++.|||-+.+ |+++|..|...|+.|+..+......    ...            .....+++...++|+|
T Consensus        22 ~~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIv  101 (171)
T d1edza1          22 PEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVV  101 (171)
T ss_dssp             CTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEE
T ss_pred             cccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEE
Confidence            3577899999999998865 9999999999999998776432110    000            0112367778899999


Q ss_pred             EEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC
Q 043239          204 IVCCALTEETHHMINKDVMTALGKEGVIINVGRGALID  241 (286)
Q Consensus       204 ~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd  241 (286)
                      +.++|..   ...+..+   +.|+|+++||+|-....+
T Consensus       102 IsavG~p---~~~i~~d---~ik~GavvIDvGi~~~~~  133 (171)
T d1edza1         102 ITGVPSE---NYKFPTE---YIKEGAVCINFACTKNFS  133 (171)
T ss_dssp             EECCCCT---TCCBCTT---TSCTTEEEEECSSSCCBC
T ss_pred             EEccCCC---ccccChh---hcccCceEeecccccccc
Confidence            9998742   1124444   368999999998654333

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.00  E-value=1.2e-06  Score=69.48  Aligned_cols=100  Identities=15%  Similarity=0.125  Sum_probs=66.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------C--------cccccCHHHhhcCCCEEEEeccCChh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------S--------YPFYANVSGLAADSDVLIVCCALTEE  212 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~--------~~~~~~l~e~l~~aDiV~~~lp~~~~  212 (286)
                      ++|+|.|||+|.||..+|+.|...|++|+++||+.++..      .        ......+++.+...|+++.++|....
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~   80 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH   80 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhh
Confidence            478999999999999999999999999999999886532      1        11123455678889999988875422


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          213 THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       213 t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      .  .+   ....++.+..+++++.-.. +...+.+.....
T Consensus        81 ~--~~---~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~  114 (182)
T d1e5qa1          81 A--TV---IKSAIRQKKHVVTTSYVSP-AMMELDQAAKDA  114 (182)
T ss_dssp             H--HH---HHHHHHHTCEEECSSCCCH-HHHHTHHHHHHT
T ss_pred             h--HH---HHHHHhhccceeecccCcH-HHHHHHHHhccc
Confidence            1  11   2222345667777764321 233444444433

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.99  E-value=2e-06  Score=65.78  Aligned_cols=67  Identities=16%  Similarity=0.254  Sum_probs=50.6

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----C-------cccccCHHHh-hcCCCEEEEeccCChhhhh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----S-------YPFYANVSGL-AADSDVLIVCCALTEETHH  215 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~-------~~~~~~l~e~-l~~aDiV~~~lp~~~~t~~  215 (286)
                      |++.|+|+|.+|+.+|+.|...|++|++++.+++...     +       ......|+++ +.+||.++++++....+.-
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~~   80 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAST   80 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhHH
Confidence            5789999999999999999999999999998765321     1       1112345555 7899999999987655443

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=4e-06  Score=67.05  Aligned_cols=106  Identities=14%  Similarity=0.079  Sum_probs=73.6

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCC---------cccccCHHH-hhcCCCEEEEeccCChhh
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS---------YPFYANVSG-LAADSDVLIVCCALTEET  213 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~---------~~~~~~l~e-~l~~aDiV~~~lp~~~~t  213 (286)
                      ..+.|++|.|+|.|..+++++..|...|.+|++++|+.++...         .....++++ ...++|+|+.|.|..-..
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~~   93 (170)
T d1nyta1          14 FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISG   93 (170)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGT
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCccc
Confidence            3578999999999999999999999999999999998765321         111223333 246799999999876432


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          214 HHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       214 ~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                      .  .....++.++++.+++|+--... .+.-|..|-+.|
T Consensus        94 ~--~~~~~~~~~~~~~~v~D~vY~P~-~T~ll~~A~~~G  129 (170)
T d1nyta1          94 D--IPAIPSSLIHPGIYCYDMFYQKG-KTPFLAWCEQRG  129 (170)
T ss_dssp             C--CCCCCGGGCCTTCEEEESCCCSS-CCHHHHHHHHTT
T ss_pred             C--CCCCcHHHhccCcEEEEeecCCC-CCHHHHHHHHcC
Confidence            2  12223456889999999976553 444444444444

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=7e-06  Score=66.28  Aligned_cols=108  Identities=13%  Similarity=0.119  Sum_probs=73.8

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCCC--------------------cccccCHHHhhcCCC
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVS--------------------YPFYANVSGLAADSD  201 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~~--------------------~~~~~~l~e~l~~aD  201 (286)
                      +.+++|++|.|+|.|.+|++++..|...|. ++++++|+.+....                    .....++.+.+.++|
T Consensus        13 ~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   92 (182)
T d1vi2a1          13 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD   92 (182)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccc
Confidence            346899999999999999999999999998 68899998765320                    001123456678999


Q ss_pred             EEEEeccCChhh---hhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239          202 VLIVCCALTEET---HHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       202 iV~~~lp~~~~t---~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i  254 (286)
                      +|+.+.|.....   ..++.  .++.++++.+++|+.-.. ..+ .+++..++.+.
T Consensus        93 iiIN~Tp~G~~~~~~~~~~~--~~~~~~~~~~v~Di~Y~p-~~T-~ll~~a~~~g~  144 (182)
T d1vi2a1          93 ILTNGTKVGMKPLENESLVN--DISLLHPGLLVTECVYNP-HMT-KLLQQAQQAGC  144 (182)
T ss_dssp             EEEECSSTTSTTSCSCCSCC--CGGGSCTTCEEEECCCSS-SSC-HHHHHHHTTTC
T ss_pred             eeccccCCccccccchhhhh--HHHhhhcchhhHHhhcCc-ccc-HHHHHHHHCcC
Confidence            999999865331   11111  245678999999996543 233 34444454443

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.89  E-value=1.6e-05  Score=64.60  Aligned_cols=105  Identities=8%  Similarity=0.092  Sum_probs=73.0

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----------------------CcccccCHHHhhcCCCEEEE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----------------------SYPFYANVSGLAADSDVLIV  205 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----------------------~~~~~~~l~e~l~~aDiV~~  205 (286)
                      |+|+|||+|-+|..+|..++ .|++|+++|.+.+...                       ......+..+...++|++++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v   79 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence            68999999999999998885 5999999997764210                       01112355566789999999


Q ss_pred             eccCChhhh-hccc-------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239          206 CCALTEETH-HMIN-------KDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       206 ~lp~~~~t~-~~i~-------~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i  254 (286)
                      ++|...... ...+       .+.+...+++.++|--+.-.+-..+.+...+.+.++
T Consensus        80 ~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~  136 (196)
T d1dlja2          80 ATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRI  136 (196)
T ss_dssp             CCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCE
T ss_pred             cCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhh
Confidence            999554322 1111       112333467888888888888788888877776655

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.79  E-value=5.1e-05  Score=60.28  Aligned_cols=82  Identities=23%  Similarity=0.331  Sum_probs=57.3

Q ss_pred             CCEEEEEcCChHHHHHHHHhccC-CCEEE-EECCCCCCCCC--cccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHh
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPF-GCSIA-YTSRKKKPGVS--YPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMT  223 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~-g~~V~-~~~r~~~~~~~--~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~  223 (286)
                      ..+|||+|+|.||+..++.++.. +++++ +++++.+....  .....+.+++..+.|+|++|+|.....     +-...
T Consensus         3 kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~-----~~a~~   77 (170)
T d1f06a1           3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMGSATDI-----PEQAP   77 (170)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTTTCSEEEECSCTTTHH-----HHHHH
T ss_pred             cceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccccccccchhhhhhccccceEEEeCCCcccH-----HHHHH
Confidence            35899999999999999999975 56755 67777655432  233557777888999999999865322     22333


Q ss_pred             cCCCCcEEEEc
Q 043239          224 ALGKEGVIINV  234 (286)
Q Consensus       224 ~mk~g~ilvn~  234 (286)
                      .++.|.-+|.+
T Consensus        78 aL~aG~~vv~~   88 (170)
T d1f06a1          78 KFAQFACTVDT   88 (170)
T ss_dssp             HHTTTSEEECC
T ss_pred             HHHCCCcEEEe
Confidence            45667655544

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.69  E-value=4.4e-05  Score=64.42  Aligned_cols=103  Identities=19%  Similarity=0.291  Sum_probs=74.3

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCC---CC--------------------------CcccccCHHH
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP---GV--------------------------SYPFYANVSG  195 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~---~~--------------------------~~~~~~~l~e  195 (286)
                      +|.|++|.|-|+|++|+.+|+.|...|++|++.+-+...   ..                          +.....+.++
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDA  107 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTG
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcch
Confidence            589999999999999999999999999998865532210   00                          1111223345


Q ss_pred             hh-cCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          196 LA-ADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       196 ~l-~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      ++ ..||+++-|.     ..+.|+++..+.++- .+++-.+.+.+ ..++ .+.|.+++|.
T Consensus       108 i~~~~~DIliPcA-----~~~~I~~~~a~~i~a-k~IvegAN~p~-t~~a-~~~L~~rgI~  160 (242)
T d1v9la1         108 IFKLDVDIFVPAA-----IENVIRGDNAGLVKA-RLVVEGANGPT-TPEA-ERILYERGVV  160 (242)
T ss_dssp             GGGCCCSEEEECS-----CSSCBCTTTTTTCCC-SEEECCSSSCB-CHHH-HHHHHTTTCE
T ss_pred             hccccccEEeecc-----hhccccHHHHHhccc-CEEEecCCCCC-ChhH-HHHHHhCCeE
Confidence            55 3699998875     466888888888864 57788888886 5555 4888888875

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.68  E-value=3.4e-05  Score=64.58  Aligned_cols=104  Identities=20%  Similarity=0.290  Sum_probs=77.8

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------CcccccCHHHhh-cCCCEEEEeccCChhhhhc
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SYPFYANVSGLA-ADSDVLIVCCALTEETHHM  216 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~~~~~~l~e~l-~~aDiV~~~lp~~~~t~~~  216 (286)
                      .+|.|+||.|-|+|++|+.+|+.|...|++|++.+.+.....      +. ...+.++++ ..|||++-|.     ..+.
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~-~~~~~~~~~~~~cDIl~PcA-----~~~~  108 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGA-DAVAPNAIYGVTCDIFAPCA-----LGAV  108 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCC-EECCGGGTTTCCCSEEEECS-----CSCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCC-cccCCcccccccccEecccc-----cccc
Confidence            359999999999999999999999999999999887543221      12 233455554 4699998874     5778


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          217 INKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       217 i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      |+++..+.++- .+++-.+...+.+.++ .+.|.++.|.
T Consensus       109 I~~~~~~~l~a-k~Ive~ANn~~t~~ea-~~~L~~rGI~  145 (230)
T d1leha1         109 LNDFTIPQLKA-KVIAGSADNQLKDPRH-GKYLHELGIV  145 (230)
T ss_dssp             BSTTHHHHCCC-SEECCSCSCCBSSHHH-HHHHHHHTCE
T ss_pred             cChHHhhccCc-cEEEecccCCCCCchH-HHHHHhhCcE
Confidence            89888888874 4677777788777665 4566666663

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.64  E-value=6.8e-05  Score=56.02  Aligned_cols=101  Identities=17%  Similarity=0.296  Sum_probs=75.9

Q ss_pred             CEEEEEcC----ChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhc
Q 043239          149 KRVGIVGL----GSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTA  224 (286)
Q Consensus       149 ~~vgIiG~----G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~  224 (286)
                      |+|+|||.    |..|..+.+.|...|++|+.++++.+...+...+.++.++-..-|++++++|. +.+..++. +..+ 
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~~lp~~~D~vvi~vp~-~~~~~~l~-~~~~-   78 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPP-KVGLQVAK-EAVE-   78 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSCH-HHHHHHHH-HHHH-
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccccCccccccchhccccceEEEEEeCH-HHHHHHHH-HHHh-
Confidence            58999994    67899999999999999999998877667777788999988889999999983 34444543 3332 


Q ss_pred             CCCCcEEEEcCCCcccCHHHHHHHHHhCCeeE
Q 043239          225 LGKEGVIINVGRGALIDEKELVHFLVRGSLVE  256 (286)
Q Consensus       225 mk~g~ilvn~srg~~vd~~al~~al~~~~i~g  256 (286)
                      +....+++..+   . ..+.+.+.+++.+++.
T Consensus        79 ~g~k~v~~~~g---~-~~~~~~~~a~~~gi~v  106 (116)
T d1y81a1          79 AGFKKLWFQPG---A-ESEEIRRFLEKAGVEY  106 (116)
T ss_dssp             TTCCEEEECTT---S-CCHHHHHHHHHHTCEE
T ss_pred             cCCceEEeccc---h-hhHHHHHHHHHcCCEE
Confidence            44556777543   2 3456778888777753

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.61  E-value=2e-05  Score=59.95  Aligned_cols=82  Identities=20%  Similarity=0.229  Sum_probs=56.5

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------Ccc-------cccCHHHh-hcCCCEEEEeccCChhhh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SYP-------FYANVSGL-AADSDVLIVCCALTEETH  214 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~~-------~~~~l~e~-l~~aDiV~~~lp~~~~t~  214 (286)
                      |+|.|+|+|.+|+.+|+.|...|++|++.+.+++...      +..       ....++++ ++++|.++.+.+..+.  
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~--   78 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEV--   78 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHH--
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHHH--
Confidence            5899999999999999999999999999998765321      111       11233443 6889999888775432  


Q ss_pred             hcccHHHHhcCCCCcEEE
Q 043239          215 HMINKDVMTALGKEGVII  232 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilv  232 (286)
                      +++-......+.+..+++
T Consensus        79 N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          79 NLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             HHHHHHHHHHTTCCCEEE
T ss_pred             HHHHHHHHHHcCCceEEE
Confidence            233344555666666654

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.57  E-value=6.8e-06  Score=65.84  Aligned_cols=106  Identities=13%  Similarity=-0.017  Sum_probs=68.7

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCC----------cccccCHHHhhcCCCEEEEeccCChhhh
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS----------YPFYANVSGLAADSDVLIVCCALTEETH  214 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~----------~~~~~~l~e~l~~aDiV~~~lp~~~~t~  214 (286)
                      .+.|++|.|+|.|..+++++..|...+.+|++++|+.++...          .......+..+.++|+|+.|.|..-...
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g~~~~   94 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLSGG   94 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-----
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccccccc
Confidence            578999999999999999999998877799999998755321          1111111223578999999999653211


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239          215 HMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG  252 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~  252 (286)
                        ........++++.+++|+.=.....+.-|..|-+.|
T Consensus        95 --~~~~~~~~~~~~~~~~D~vy~~p~~T~~l~~A~~~g  130 (171)
T d1p77a1          95 --TASVDAEILKLGSAFYDMQYAKGTDTPFIALCKSLG  130 (171)
T ss_dssp             ----CCCHHHHHHCSCEEESCCCTTSCCHHHHHHHHTT
T ss_pred             --ccchhhhhhcccceeeeeeccCcccHHHHHHHHHcC
Confidence              111122335677889998765555555555555554

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=97.56  E-value=4.9e-05  Score=64.04  Aligned_cols=67  Identities=12%  Similarity=0.105  Sum_probs=58.9

Q ss_pred             cccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeE
Q 043239          189 FYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVE  256 (286)
Q Consensus       189 ~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~g  256 (286)
                      ...|..|++++||+|++|+|..+.+..++ ++..+.+++|++++|+|+........+.+.+++..+..
T Consensus       131 v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~v  197 (242)
T d2b0ja2         131 VTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNI  197 (242)
T ss_dssp             EESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEE
T ss_pred             EECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEE
Confidence            45789999999999999999777777777 67899999999999999999999999999998877653

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=6.3e-05  Score=59.18  Aligned_cols=102  Identities=23%  Similarity=0.342  Sum_probs=68.3

Q ss_pred             CEEEEEcCChHHHH-HHHHhccC-CCEEE-EECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239          149 KRVGIVGLGSIGSE-VAKRLVPF-GCSIA-YTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       149 ~~vgIiG~G~iG~~-~A~~l~~~-g~~V~-~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      .+|||||+|.||+. ....+... ++++. ++|++.+...      +...+.++++++++.|+|++++|......  +..
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h~~--~~~   79 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFD--VVS   79 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHH--HHH
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchhccc--ccc
Confidence            48999999999986 56666654 66764 6888876542      34456788999999999999998553322  222


Q ss_pred             HHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHhCCee
Q 043239          220 DVMTALGKE-GVIINVG-RGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       220 ~~l~~mk~g-~ilvn~s-rg~~vd~~al~~al~~~~i~  255 (286)
                      ..+.   .| .+++.-- --++-+...|.++.++.++.
T Consensus        80 ~al~---~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~  114 (164)
T d1tlta1          80 TLLN---AGVHVCVDKPLAENLRDAERLVELAARKKLT  114 (164)
T ss_dssp             HHHH---TTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             cccc---ccceeeccccccCCHHHHHHHHHHHHHcCCc
Confidence            3333   33 4666531 23456777777777777654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.54  E-value=4.8e-05  Score=61.55  Aligned_cols=67  Identities=18%  Similarity=0.236  Sum_probs=50.4

Q ss_pred             CcccCCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC----------C--c-----ccccCHHHhhcCCCEE
Q 043239          142 LGSTLGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------S--Y-----PFYANVSGLAADSDVL  203 (286)
Q Consensus       142 ~~~~l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------~--~-----~~~~~l~e~l~~aDiV  203 (286)
                      .+.+|+||++.|.| .|.||+.+|+.|...|++|+..+|+.++..          .  .     ....++++++.+.|+|
T Consensus        17 ~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDil   96 (191)
T d1luaa1          17 AGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFV   96 (191)
T ss_dssp             TTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEE
T ss_pred             cCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCee
Confidence            45679999999999 699999999999999999999999865421          0  0     1123455667777777


Q ss_pred             EEecc
Q 043239          204 IVCCA  208 (286)
Q Consensus       204 ~~~lp  208 (286)
                      +.+.+
T Consensus        97 in~Ag  101 (191)
T d1luaa1          97 FTAGA  101 (191)
T ss_dssp             EECCC
T ss_pred             eecCc
Confidence            76644

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.53  E-value=7.3e-05  Score=58.64  Aligned_cols=92  Identities=17%  Similarity=0.154  Sum_probs=60.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-------------C----cccccCHHHhhcCCCEEEEecc
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-------------S----YPFYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-------------~----~~~~~~l~e~l~~aDiV~~~lp  208 (286)
                      +.++|+|||.|.+|+.+|..+...+. +++.+|.......             .    .....+.++.+++||+|+++..
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag   85 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG   85 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc
Confidence            46799999999999999988877665 8999998765422             0    0112456788999999999864


Q ss_pred             CCh--------hhhhcc---c----HH---HHhcCCCCcEEEEcCCCc
Q 043239          209 LTE--------ETHHMI---N----KD---VMTALGKEGVIINVGRGA  238 (286)
Q Consensus       209 ~~~--------~t~~~i---~----~~---~l~~mk~g~ilvn~srg~  238 (286)
                      ...        .++.-.   +    ++   .+....|.+++++++..-
T Consensus        86 ~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNPv  133 (154)
T d1pzga1          86 LTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPL  133 (154)
T ss_dssp             CSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSH
T ss_pred             cccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCcH
Confidence            211        122111   1    11   233346889999986553

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.51  E-value=0.00014  Score=56.25  Aligned_cols=89  Identities=22%  Similarity=0.342  Sum_probs=54.6

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCCC--------------cccccCHHHhhcCCCEEEEeccCChh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGVS--------------YPFYANVSGLAADSDVLIVCCALTEE  212 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~~--------------~~~~~~l~e~l~~aDiV~~~lp~~~~  212 (286)
                      ++|+|||.|.+|..+|-.+...+.  ++..+|+..+...+              ......-.+.+++||+|+++......
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   81 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRK   81 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC---
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccccC
Confidence            489999999999999999887665  89999987765431              00112234568899999998432221


Q ss_pred             ---hh-hcc--c----HH---HHhcCCCCcEEEEcCCC
Q 043239          213 ---TH-HMI--N----KD---VMTALGKEGVIINVGRG  237 (286)
Q Consensus       213 ---t~-~~i--~----~~---~l~~mk~g~ilvn~srg  237 (286)
                         ++ .++  +    ++   .+....|.+++++++..
T Consensus        82 ~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNP  119 (142)
T d1y6ja1          82 PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNP  119 (142)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSS
T ss_pred             cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecCh
Confidence               11 111  1    11   13334678899999664

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=97.50  E-value=6.8e-05  Score=57.90  Aligned_cols=89  Identities=19%  Similarity=0.240  Sum_probs=58.3

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC---------------Ccc-cccCHHHhhcCCCEEEEecc--
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV---------------SYP-FYANVSGLAADSDVLIVCCA--  208 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~---------------~~~-~~~~l~e~l~~aDiV~~~lp--  208 (286)
                      ++|+|||.|.+|..+|..+...|.  ++..+|..+....               ... ...+..+.+++||+|+++.-  
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~   80 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence            589999999999999999988774  8999998775421               011 12344567899999999853  


Q ss_pred             CChh-hhh--------ccc--HHHHhcCCCCcEEEEcCCC
Q 043239          209 LTEE-THH--------MIN--KDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       209 ~~~~-t~~--------~i~--~~~l~~mk~g~ilvn~srg  237 (286)
                      ..+. ++.        ++.  .+.+....|.+++++++..
T Consensus        81 ~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNP  120 (142)
T d1guza1          81 RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP  120 (142)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSS
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCC
Confidence            2221 111        110  0122233588999999654

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.50  E-value=0.00019  Score=61.95  Aligned_cols=106  Identities=14%  Similarity=0.258  Sum_probs=74.5

Q ss_pred             CcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCC---CCCc-------------------ccccCHHHhh-c
Q 043239          142 LGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP---GVSY-------------------PFYANVSGLA-A  198 (286)
Q Consensus       142 ~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~---~~~~-------------------~~~~~l~e~l-~  198 (286)
                      +..+|.|+||.|=|+|++|..+|+.|...|++|++++-+...   ..+.                   ....+.++++ .
T Consensus        30 l~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (293)
T d1hwxa1          30 MTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEV  109 (293)
T ss_dssp             CCSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGC
T ss_pred             CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccC
Confidence            345799999999999999999999999999998866532210   0000                   0011223344 3


Q ss_pred             CCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          199 DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       199 ~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      .||+++-|.     +.+.|+.+....++- .+|+-.+.+++. .++ .+.|.+++|.
T Consensus       110 ~~DIliPaA-----~~~~I~~~~a~~l~a-k~I~EgAN~P~t-~eA-~~~L~~~gI~  158 (293)
T d1hwxa1         110 DCDILIPAA-----SEKQLTKSNAPRVKA-KIIAEGANGPTT-PQA-DKIFLERNIM  158 (293)
T ss_dssp             CCSEEEECS-----SSSCBCTTTGGGCCC-SEEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred             CccEEeecc-----ccccccHHHHHHHhh-CEEeccCCCCCC-cch-HHHHHHCCCE
Confidence            799998774     577888888888865 477888888864 444 4778887775

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.49  E-value=2.9e-05  Score=68.76  Aligned_cols=85  Identities=15%  Similarity=0.175  Sum_probs=65.3

Q ss_pred             CEEEEEcCChHHHHHHHHhc-cCCC-EEEEECCCCCCCC----------C--cccccCHHHhhcCCCEEEEeccCChhhh
Q 043239          149 KRVGIVGLGSIGSEVAKRLV-PFGC-SIAYTSRKKKPGV----------S--YPFYANVSGLAADSDVLIVCCALTEETH  214 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~-~~g~-~V~~~~r~~~~~~----------~--~~~~~~l~e~l~~aDiV~~~lp~~~~t~  214 (286)
                      ++++|||.|..+...++.+. -++. +|.+|+|+++...          +  +..+.+++++++.||+|++|++ ++++.
T Consensus       129 ~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Ta-s~s~~  207 (340)
T d1x7da_         129 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTA-DKAYA  207 (340)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCC-CSSEE
T ss_pred             ceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccc-cCCCC
Confidence            58999999999999888765 4565 7999999875321          2  2346799999999999998875 34556


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCC
Q 043239          215 HMINKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~srg  237 (286)
                      .++..+   .+|||+.+..+|.-
T Consensus       208 Pv~~~~---~l~pG~hI~aiGs~  227 (340)
T d1x7da_         208 TIITPD---MLEPGMHLNAVGGD  227 (340)
T ss_dssp             EEECGG---GCCTTCEEEECSCC
T ss_pred             cccchh---hcCCCCEEeecccc
Confidence            777754   47899998888753

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=7e-05  Score=60.83  Aligned_cols=63  Identities=22%  Similarity=0.221  Sum_probs=50.0

Q ss_pred             CCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cc-------ccccCHHHhhcCCCEEEEeccC
Q 043239          147 GGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SY-------PFYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~-------~~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      ..++|.|+| .|.+|+.+++.|...|++|.++.|++++..     +.       ....++.++++++|+|+.++..
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~   77 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT   77 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEecc
Confidence            467999999 799999999999999999999988776432     11       1234667789999999988754

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.46  E-value=4.9e-05  Score=59.18  Aligned_cols=89  Identities=22%  Similarity=0.384  Sum_probs=57.4

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC-------------Cc--ccccCHHHhhcCCCEEEEeccCCh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV-------------SY--PFYANVSGLAADSDVLIVCCALTE  211 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~-------------~~--~~~~~l~e~l~~aDiV~~~lp~~~  211 (286)
                      |+|+|||.|.+|..+|-.|...|.  ++..+|.......             ..  ....+-.+.+++||+|+++.....
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~~   81 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIK   81 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCGG
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEeccccc
Confidence            699999999999999998887664  8999998765421             00  111122356899999999865321


Q ss_pred             -------hhh--------hccc--HHHHhcCCCCcEEEEcCCC
Q 043239          212 -------ETH--------HMIN--KDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       212 -------~t~--------~~i~--~~~l~~mk~g~ilvn~srg  237 (286)
                             .++        .++.  ...+....|.+++++++..
T Consensus        82 ~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNP  124 (146)
T d1hyha1          82 LQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNP  124 (146)
T ss_dssp             GTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred             cccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCc
Confidence                   011        1111  1123445788999999654

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.41  E-value=2.3e-05  Score=62.80  Aligned_cols=106  Identities=14%  Similarity=0.100  Sum_probs=71.2

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCC---------------cccccCHHHhhcCCCEEEEeccC
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS---------------YPFYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~---------------~~~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      +++|++|.|+|.|..+++++..|...| +|++++|+.++...               .....++...+..+|+++++.|.
T Consensus        15 ~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp~   93 (177)
T d1nvta1          15 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPI   93 (177)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCT
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCcc
Confidence            589999999999999999999998877 89999998765321               01234556667889999999886


Q ss_pred             Chhhhhcc-cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 043239          210 TEETHHMI-NKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGS  253 (286)
Q Consensus       210 ~~~t~~~i-~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~  253 (286)
                      ......-. ..-.+..++++.+++|+.-....  ..|+++.++.+
T Consensus        94 g~~~~~~~~~~~~~~~~~~~~~v~D~~y~p~~--T~l~~~a~~~G  136 (177)
T d1nvta1          94 GMYPNIDVEPIVKAEKLREDMVVMDLIYNPLE--TVLLKEAKKVN  136 (177)
T ss_dssp             TCTTCCSSCCSSCSTTCCSSSEEEECCCSSSS--CHHHHHHHTTT
T ss_pred             cccccccccchhhhhccCcccceeeecCCcHh--HHHHHHHHHCC
Confidence            42211110 00124456788999998654422  33444444443

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.41  E-value=0.00052  Score=57.29  Aligned_cols=105  Identities=15%  Similarity=0.186  Sum_probs=75.7

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhc-cCCCEEEEECCCCC------CCC-----------------CcccccCHHHhhc
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLV-PFGCSIAYTSRKKK------PGV-----------------SYPFYANVSGLAA  198 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~-~~g~~V~~~~r~~~------~~~-----------------~~~~~~~l~e~l~  198 (286)
                      +.++.|++|.|=|+|++|+.+|+.|. ..|.+|++.+-+..      -..                 ......+.++++.
T Consensus        26 ~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (234)
T d1b26a1          26 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLE  105 (234)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEECHHHHHT
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeeccccccc
Confidence            34689999999999999999999995 67999876652211      000                 0011235566665


Q ss_pred             -CCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          199 -DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       199 -~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                       .||+++-|.     ..+.|+++..+.++- .+++-.+.+.+. .++ .+.|.++.|.
T Consensus       106 ~~~DI~~PcA-----~~~~I~~~~a~~l~~-~~I~e~AN~p~t-~~a-~~~L~~rgI~  155 (234)
T d1b26a1         106 LDVDILVPAA-----LEGAIHAGNAERIKA-KAVVEGANGPTT-PEA-DEILSRRGIL  155 (234)
T ss_dssp             SCCSEEEECS-----CTTCBCHHHHTTCCC-SEEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred             cccceeecch-----hcccccHHHHHHhhh-ceEeecCCCCCC-HHH-HHHHHHCCeE
Confidence             799998773     567899999999975 467888888864 444 5778888775

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.40  E-value=5.3e-05  Score=58.50  Aligned_cols=89  Identities=28%  Similarity=0.403  Sum_probs=56.8

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC--------------CcccccCHHHhhcCCCEEEEeccC--C
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV--------------SYPFYANVSGLAADSDVLIVCCAL--T  210 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~--------------~~~~~~~l~e~l~~aDiV~~~lp~--~  210 (286)
                      ++|+|||.|.+|..+|..+...+.  ++..+|...+...              ......+..+.+++||+|+++...  .
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   80 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQK   80 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecccccC
Confidence            589999999999999998876554  8999998764321              011122334568999999998532  1


Q ss_pred             h-hhh-hcc--cH-------HHHhcCCCCcEEEEcCCC
Q 043239          211 E-ETH-HMI--NK-------DVMTALGKEGVIINVGRG  237 (286)
Q Consensus       211 ~-~t~-~~i--~~-------~~l~~mk~g~ilvn~srg  237 (286)
                      + .++ .++  |.       +.+....|++++++++..
T Consensus        81 ~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNP  118 (140)
T d1a5za1          81 PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNP  118 (140)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             CCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCc
Confidence            1 111 111  11       123334788999998754

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.40  E-value=8.3e-05  Score=58.10  Aligned_cols=90  Identities=21%  Similarity=0.201  Sum_probs=58.6

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-------------Cc--c-cccCHHHhhcCCCEEEEeccCC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-------------SY--P-FYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-------------~~--~-~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      ..+|+|||.|.+|..+|..+...+. ++..+|+..+...             ..  . ...+..+.+++||+|+++....
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~   82 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFT   82 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecccc
Confidence            3589999999999999988876665 7899998775422             01  1 1124456789999999986532


Q ss_pred             hh---h-----hhc-c--c----HHH---HhcCCCCcEEEEcCCC
Q 043239          211 EE---T-----HHM-I--N----KDV---MTALGKEGVIINVGRG  237 (286)
Q Consensus       211 ~~---t-----~~~-i--~----~~~---l~~mk~g~ilvn~srg  237 (286)
                      ..   +     +.- +  +    ++.   +....|++++++++..
T Consensus        83 ~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNP  127 (150)
T d1t2da1          83 KAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNP  127 (150)
T ss_dssp             SCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             cCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence            11   1     111 1  1    122   2333688999999765

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.39  E-value=0.0001  Score=56.10  Aligned_cols=108  Identities=21%  Similarity=0.250  Sum_probs=76.0

Q ss_pred             CCCCEEEEEcC----ChHHHHHHHHhccCC-CEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHH
Q 043239          146 LGGKRVGIVGL----GSIGSEVAKRLVPFG-CSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKD  220 (286)
Q Consensus       146 l~g~~vgIiG~----G~iG~~~A~~l~~~g-~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~  220 (286)
                      +.-++|+|||.    |..|..+.+.|+..| .+|+..+++.+...+...+.|+.|+-..-|++++++| .+.+..++. +
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i~G~~~y~sl~dlp~~vDlvvi~vp-~~~~~~~~~-~   83 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDIPDEIDLAIIVVP-KRFVKDTLI-Q   83 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSCSSCCSEEEECSC-HHHHHHHHH-H
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccccCCeEeecchhhcCCCCceEEEecC-hHHhHHHHH-H
Confidence            56689999996    889999999998866 5899999987777777788999999888999999998 445555553 3


Q ss_pred             HHhcCCCCcEEEEcCCCcc-----cCHHHHHHHHHhCCee
Q 043239          221 VMTALGKEGVIINVGRGAL-----IDEKELVHFLVRGSLV  255 (286)
Q Consensus       221 ~l~~mk~g~ilvn~srg~~-----vd~~al~~al~~~~i~  255 (286)
                      ..+.=-++.+++..+-++.     ..++.|.+..++..++
T Consensus        84 ~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~gir  123 (129)
T d2csua1          84 CGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMR  123 (129)
T ss_dssp             HHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCE
T ss_pred             HHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCCE
Confidence            3322223344443333332     2344566666666554

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.35  E-value=4.6e-05  Score=60.21  Aligned_cols=35  Identities=34%  Similarity=0.620  Sum_probs=32.4

Q ss_pred             CEEEEE-cCChHHHHHHHHhccCCCEEEEECCCCCC
Q 043239          149 KRVGIV-GLGSIGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       149 ~~vgIi-G~G~iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      |||+|+ |.|.||+.+|++|...|++|.+++|++++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~   36 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEK   36 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            689999 89999999999999999999999998754

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.32  E-value=0.0001  Score=64.57  Aligned_cols=83  Identities=14%  Similarity=0.185  Sum_probs=64.1

Q ss_pred             CEEEEEcCChHHHHHHHHhcc-CCC-EEEEECCCCCCCC---------CcccccCHHHhhcCCCEEEEeccCChhhhhcc
Q 043239          149 KRVGIVGLGSIGSEVAKRLVP-FGC-SIAYTSRKKKPGV---------SYPFYANVSGLAADSDVLIVCCALTEETHHMI  217 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~-~g~-~V~~~~r~~~~~~---------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i  217 (286)
                      ++++|||.|..++..++.+.. +.. +|.+|+|+.++..         +.....+..+.+.+||+|+++.|   ++..++
T Consensus       126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~---s~~P~~  202 (320)
T d1omoa_         126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTP---SRKPVV  202 (320)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCC---CSSCCB
T ss_pred             cEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEecc---Cccccc
Confidence            589999999999999998774 455 7999999876532         23334567788899999999866   456677


Q ss_pred             cHHHHhcCCCCcEEEEcCCC
Q 043239          218 NKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       218 ~~~~l~~mk~g~ilvn~srg  237 (286)
                      ..+   .+++|+.+..+|.-
T Consensus       203 ~~~---~l~~G~hv~~iGs~  219 (320)
T d1omoa_         203 KAE---WVEEGTHINAIGAD  219 (320)
T ss_dssp             CGG---GCCTTCEEEECSCC
T ss_pred             chh---hcCCCCeEeecCCc
Confidence            654   47999999998753

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=0.00011  Score=54.36  Aligned_cols=37  Identities=27%  Similarity=0.427  Sum_probs=33.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      .+.||||+|.|..|+.++...+.+|+++.++|+++..
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            4568999999999999999999999999999987764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.31  E-value=6.5e-05  Score=59.39  Aligned_cols=87  Identities=24%  Similarity=0.310  Sum_probs=59.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc------ccCH-HHhhcCCCEEEEeccCChhhh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF------YANV-SGLAADSDVLIVCCALTEETH  214 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~------~~~l-~e~l~~aDiV~~~lp~~~~t~  214 (286)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++++..     +...      ..+. +......|+++.++.....  
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~--  104 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTD--  104 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTT--
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCcc--
Confidence            578999999999999999999999999999998877532     2111      1122 2344567888887653221  


Q ss_pred             hcccHHHHhcCCCCcEEEEcCC
Q 043239          215 HMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                       ..-...++.++++..++.++-
T Consensus       105 -~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1piwa2         105 -IDFNIMPKAMKVGGRIVSISI  125 (168)
T ss_dssp             -CCTTTGGGGEEEEEEEEECCC
T ss_pred             -chHHHHHHHhhccceEEEecc
Confidence             111345666777777777753

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.30  E-value=9.8e-05  Score=57.38  Aligned_cols=90  Identities=14%  Similarity=0.278  Sum_probs=57.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC--------------Cc-ccccCHHHhhcCCCEEEEeccC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV--------------SY-PFYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~--------------~~-~~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      ..++|+|||.|.+|..+|..|...|.  ++..+|+..+...              .. ....+. +.+++||+|+++...
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~-~~~~~adivvitag~   82 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY-SDCKDADLVVITAGA   82 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG-GGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH-HHhccccEEEEeccc
Confidence            46799999999999999999987664  8999998764311              01 112344 456899999997532


Q ss_pred             Chh---hh--------hcccH--HHHhcCCCCcEEEEcCCC
Q 043239          210 TEE---TH--------HMINK--DVMTALGKEGVIINVGRG  237 (286)
Q Consensus       210 ~~~---t~--------~~i~~--~~l~~mk~g~ilvn~srg  237 (286)
                      ...   ++        .++.+  +.+..-.|.+++++++..
T Consensus        83 ~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNP  123 (146)
T d1ez4a1          83 PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANP  123 (146)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCc
Confidence            111   11        11111  123345788999999753

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.26  E-value=0.00025  Score=56.08  Aligned_cols=101  Identities=15%  Similarity=0.270  Sum_probs=66.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCCh-----hhh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALTE-----ETH  214 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~-----~t~  214 (286)
                      ++++|.|+|.|..|++++..|...|+ +|.+++|+.++..      +.....++  -..++|+|+.|.|..-     +..
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~--~~~~~DliINaTpiGm~~~~~~~~   93 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSL--ENQQADILVNVTSIGMKGGKEEMD   93 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCC--TTCCCSEEEECSSTTCTTSTTTTS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhcc--cccchhhheeccccCCcccccccc
Confidence            57899999999999999999999998 7999999876532      11111121  1357999999998531     111


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239          215 HMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i  254 (286)
                      -.+....   ++++.+++|+--.. ..+. |++..++.++
T Consensus        94 l~~~~~~---~~~~~~v~D~vY~P-~~T~-ll~~A~~~G~  128 (167)
T d1npya1          94 LAFPKAF---IDNASVAFDVVAMP-VETP-FIRYAQARGK  128 (167)
T ss_dssp             CSSCHHH---HHHCSEEEECCCSS-SSCH-HHHHHHHTTC
T ss_pred             ccccHhh---cCCcceEEEEeecc-CCCH-HHHHHHHCCC
Confidence            1233333   34678999996554 3334 4444444433

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=97.21  E-value=0.00053  Score=53.73  Aligned_cols=103  Identities=10%  Similarity=0.126  Sum_probs=66.4

Q ss_pred             CEEEEEcCChHHHH-HHHHhccC-CCEEEEECCCCCCCC------Cc-ccccCHHHhhc-CCCEEEEeccCChhhhhccc
Q 043239          149 KRVGIVGLGSIGSE-VAKRLVPF-GCSIAYTSRKKKPGV------SY-PFYANVSGLAA-DSDVLIVCCALTEETHHMIN  218 (286)
Q Consensus       149 ~~vgIiG~G~iG~~-~A~~l~~~-g~~V~~~~r~~~~~~------~~-~~~~~l~e~l~-~aDiV~~~lp~~~~t~~~i~  218 (286)
                      .+|||||+|.+|+. ....+... +.++.+++++++...      +. ..+.+.+++++ +.|+|++++|......  +-
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~--~~   79 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHST--LA   79 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHH--HH
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccccccccccc--cc
Confidence            58999999999976 56677765 557788888764321      11 23567778775 5799999998543322  22


Q ss_pred             HHHHhcCCCCcEEEEcC-CCcccCHHHHHHHHHhCCee
Q 043239          219 KDVMTALGKEGVIINVG-RGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       219 ~~~l~~mk~g~ilvn~s-rg~~vd~~al~~al~~~~i~  255 (286)
                      ...++.=+  .+++.-- --.+-+.+.|.++.++.++.
T Consensus        80 ~~al~~gk--~V~~EKP~~~~~~e~~~l~~~a~~~~~~  115 (167)
T d1xeaa1          80 AFFLHLGI--PTFVDKPLAASAQECENLYELAEKHHQP  115 (167)
T ss_dssp             HHHHHTTC--CEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             cccccccc--ccccCCCCcCCHHHHHHHHHHHHHcCCE
Confidence            33443222  3666542 23445678888888877654

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.20  E-value=0.00075  Score=51.74  Aligned_cols=103  Identities=16%  Similarity=0.162  Sum_probs=75.1

Q ss_pred             CCCEEEEEcC----ChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239          147 GGKRVGIVGL----GSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM  222 (286)
Q Consensus       147 ~g~~vgIiG~----G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l  222 (286)
                      .-++|+|||.    |..|..+++.|+.+|++|+.+++......+...+.++.++-..-|++++++|. +.+..++. +..
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~dlp~~iD~v~i~vp~-~~~~~~~~-e~~   95 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYVE-QAI   95 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSCH-HHHHHHHH-HHH
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCcccccccccCccceEEEEEeCH-HHHHHHHH-HHH
Confidence            4579999996    57999999999999999999998876666777789999988889999999983 34444443 333


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeE
Q 043239          223 TALGKEGVIINVGRGALIDEKELVHFLVRGSLVE  256 (286)
Q Consensus       223 ~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~g  256 (286)
                      + +....+++..|-   .++ .+.+.+++.++..
T Consensus        96 ~-~g~k~v~~~~G~---~~e-e~~~~a~~~gi~v  124 (139)
T d2d59a1          96 K-KGAKVVWFQYNT---YNR-EASKKADEAGLII  124 (139)
T ss_dssp             H-HTCSEEEECTTC---CCH-HHHHHHHHTTCEE
T ss_pred             H-hCCCEEEEeccc---cCH-HHHHHHHHCCCEE
Confidence            2 345567775542   333 4556666666653

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.19  E-value=0.0024  Score=53.23  Aligned_cols=103  Identities=22%  Similarity=0.325  Sum_probs=73.1

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhc-cCCCEEEEECCCCCC---------------------CCCc--ccccCHHHhh-cC
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLV-PFGCSIAYTSRKKKP---------------------GVSY--PFYANVSGLA-AD  199 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~-~~g~~V~~~~r~~~~---------------------~~~~--~~~~~l~e~l-~~  199 (286)
                      .|.|++|.|-|+|++|..+|+.|. ..|.+|+..+-+...                     ...+  ....+.++++ ..
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~  108 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELE  108 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEECHHHHHHSC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeeeccccccccc
Confidence            489999999999999999999986 579998765432210                     0000  1123455655 46


Q ss_pred             CCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          200 SDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       200 aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      |||++-|.     +.+.|+++..+.++- .+++-.+.+.+. .++ .+.|.++.|.
T Consensus       109 ~DIl~PcA-----~~~~I~~~~a~~i~a-k~I~e~AN~p~t-~ea-~~~L~~rgI~  156 (239)
T d1gtma1         109 VDVLAPAA-----IEEVITKKNADNIKA-KIVAEVANGPVT-PEA-DEILFEKGIL  156 (239)
T ss_dssp             CSEEEECS-----CSCCBCTTGGGGCCC-SEEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred             ccEEeecc-----ccccccHHHHHhccc-cEEEecCCCCCC-HHH-HHHHHHCCCE
Confidence            99998875     467888888888865 577888888875 444 5778888875

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.17  E-value=8.4e-05  Score=57.86  Aligned_cols=92  Identities=20%  Similarity=0.387  Sum_probs=59.0

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC---------------CcccccCHHHhhcCCCEEEEecc
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV---------------SYPFYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~---------------~~~~~~~l~e~l~~aDiV~~~lp  208 (286)
                      -.+++|+|||.|.+|..+|..+...|.  ++..+|+.++...               ......+-.+.+++||+|+++..
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag   83 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG   83 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecc
Confidence            467899999999999999999987665  7999998664311               11112233467899999998754


Q ss_pred             CChh---hh-hcc--cH----H---HHhcCCCCcEEEEcCCC
Q 043239          209 LTEE---TH-HMI--NK----D---VMTALGKEGVIINVGRG  237 (286)
Q Consensus       209 ~~~~---t~-~~i--~~----~---~l~~mk~g~ilvn~srg  237 (286)
                      ....   ++ .++  +.    +   .+....|.+++++++..
T Consensus        84 ~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNP  125 (148)
T d1ldna1          84 ANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNP  125 (148)
T ss_dssp             CCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSS
T ss_pred             cccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCc
Confidence            3221   11 111  11    1   22333578899998544

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.10  E-value=0.00051  Score=53.80  Aligned_cols=86  Identities=22%  Similarity=0.256  Sum_probs=60.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc-------cccCHHH---hh-----cCCCEEEEe
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP-------FYANVSG---LA-----ADSDVLIVC  206 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~-------~~~~l~e---~l-----~~aDiV~~~  206 (286)
                      .|.+|.|+|.|.||...++.++.+|++|+++++++++..     +..       ...+..+   .+     ..+|+|+-+
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~  105 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC  105 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeec
Confidence            467999999999999999999999999999998765421     111       0112222   22     347999888


Q ss_pred             ccCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 043239          207 CALTEETHHMINKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       207 lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg  237 (286)
                      +. .+.+   + ...+..++++..++.++-.
T Consensus       106 ~g-~~~~---~-~~a~~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2         106 SG-NEKC---I-TIGINITRTGGTLMLVGMG  131 (170)
T ss_dssp             SC-CHHH---H-HHHHHHSCTTCEEEECSCC
T ss_pred             CC-ChHH---H-HHHHHHHhcCCceEEEecC
Confidence            75 3222   1 3567789999999999855

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.07  E-value=0.0035  Score=48.98  Aligned_cols=98  Identities=17%  Similarity=0.234  Sum_probs=70.7

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC----------------CcccccCHHHhhcCCCEEEEec
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------SYPFYANVSGLAADSDVLIVCC  207 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~~~~~~~l~e~l~~aDiV~~~l  207 (286)
                      +|.|++|+++|= .++..+++..+..+|+++....+..-...                ......+++++++.+|+|..-.
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~   80 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV   80 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence            378999999995 45778999999999999998877543221                1223578999999999998642


Q ss_pred             cC------C-hh-----hhhcccHHHHhcCCCCcEEEEcC---CCcccCH
Q 043239          208 AL------T-EE-----THHMINKDVMTALGKEGVIINVG---RGALIDE  242 (286)
Q Consensus       208 p~------~-~~-----t~~~i~~~~l~~mk~g~ilvn~s---rg~~vd~  242 (286)
                      =.      . +.     ....++.+.++.+|++++|.-+.   ||.=|+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHplP~~Rg~EI~~  130 (163)
T d1pvva2          81 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTD  130 (163)
T ss_dssp             CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSCCCBTTTBCH
T ss_pred             eeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCCccccccccch
Confidence            11      0 00     22456888999999999999885   5544444

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=97.05  E-value=0.00096  Score=50.84  Aligned_cols=102  Identities=16%  Similarity=0.145  Sum_probs=73.3

Q ss_pred             CCCEEEEEcC----ChHHHHHHHHhccCCCEEEEECCCCCC--CCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHH
Q 043239          147 GGKRVGIVGL----GSIGSEVAKRLVPFGCSIAYTSRKKKP--GVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKD  220 (286)
Q Consensus       147 ~g~~vgIiG~----G~iG~~~A~~l~~~g~~V~~~~r~~~~--~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~  220 (286)
                      .-++|+|||.    +..|..+.+.|+..|+++..++.+...  ..+...+.++.++-..-|++++++| .+....++.+ 
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~i~g~~~~~~l~~i~~~iD~v~v~~p-~~~v~~~v~~-   89 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRP-PSALMDHLPE-   89 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSC-HHHHTTTHHH-
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccceeeceecccchhhccCCCceEEEecc-HHHHHHHHHH-
Confidence            3468999997    679999999999999999988876543  3455667889888888999999998 4455555543 


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          221 VMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       221 ~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      ... +...++++..+   ..+ +++.+..++.++.
T Consensus        90 ~~~-~g~k~i~~q~G---~~~-~e~~~~a~~~Gi~  119 (136)
T d1iuka_          90 VLA-LRPGLVWLQSG---IRH-PEFEKALKEAGIP  119 (136)
T ss_dssp             HHH-HCCSCEEECTT---CCC-HHHHHHHHHTTCC
T ss_pred             HHh-hCCCeEEEecC---ccC-HHHHHHHHHcCCE
Confidence            332 35567887654   234 4556666666654

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.02  E-value=0.00029  Score=54.36  Aligned_cols=88  Identities=22%  Similarity=0.212  Sum_probs=57.0

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC-------------Cc----ccccCHHHhhcCCCEEEEeccC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV-------------SY----PFYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~-------------~~----~~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      ++|+|||.|.+|..+|..+...|.  ++..+|...+...             ..    ....+ .|.+++||+|++....
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~adiVvitag~   79 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC-HHHhccccEEEEeccc
Confidence            589999999999999998886664  7999997764421             11    11224 3678999999987542


Q ss_pred             --Chh---------hhhccc--HHHHhcCCCCcEEEEcCCC
Q 043239          210 --TEE---------THHMIN--KDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       210 --~~~---------t~~~i~--~~~l~~mk~g~ilvn~srg  237 (286)
                        .+.         +..++.  .+.+....|.+++++++..
T Consensus        80 ~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNP  120 (142)
T d1ojua1          80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP  120 (142)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSS
T ss_pred             cCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCC
Confidence              221         111110  1123334678999999764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00071  Score=53.15  Aligned_cols=86  Identities=21%  Similarity=0.249  Sum_probs=62.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-----Ccc-----cccCHHHhh--------cCCCEEEEec
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-----SYP-----FYANVSGLA--------ADSDVLIVCC  207 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-----~~~-----~~~~l~e~l--------~~aDiV~~~l  207 (286)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++..     ++.     ...+..+..        ...|+|+-++
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~  105 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  105 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEecc
Confidence            46799999999999999999999999 7999998776532     221     112333322        2579999887


Q ss_pred             cCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 043239          208 ALTEETHHMINKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       208 p~~~~t~~~i~~~~l~~mk~g~ilvn~srg  237 (286)
                      +. +.+    -+..++.+++|..++.++-.
T Consensus       106 G~-~~~----~~~a~~~~~~gG~iv~~G~~  130 (171)
T d1pl8a2         106 GA-EAS----IQAGIYATRSGGTLVLVGLG  130 (171)
T ss_dssp             CC-HHH----HHHHHHHSCTTCEEEECSCC
T ss_pred             CC-chh----HHHHHHHhcCCCEEEEEecC
Confidence            63 222    24677889999999988754

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.97  E-value=0.00019  Score=55.50  Aligned_cols=40  Identities=30%  Similarity=0.566  Sum_probs=36.0

Q ss_pred             CCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCC
Q 043239          141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRK  180 (286)
Q Consensus       141 ~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~  180 (286)
                      ++..++.|+++.|||.|.+|..-|+.|...|++|+++++.
T Consensus         6 pl~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1           6 QLAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             EEEECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             hhheeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4566799999999999999999999999999999998653

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.94  E-value=0.0002  Score=57.15  Aligned_cols=104  Identities=15%  Similarity=0.180  Sum_probs=67.8

Q ss_pred             CEEEEEcCChHHHHHHHHhccC-CCEEE-EECCCCCCCC----------CcccccCHHHhhc--CCCEEEEeccCChhhh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF-GCSIA-YTSRKKKPGV----------SYPFYANVSGLAA--DSDVLIVCCALTEETH  214 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~-g~~V~-~~~r~~~~~~----------~~~~~~~l~e~l~--~aDiV~~~lp~~~~t~  214 (286)
                      .++||||+|.||+..++.+... +++|+ +++++.++..          ....+.+++++++  +.|+|+++.|......
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~   81 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE   81 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcc
Confidence            4899999999999999998876 66776 5687654321          1234679999884  4789999988543322


Q ss_pred             hcccHHHHhcCCCCc-EEEEcC-CCcccCHHHHHHHHHhCCeeEE
Q 043239          215 HMINKDVMTALGKEG-VIINVG-RGALIDEKELVHFLVRGSLVEL  257 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~-ilvn~s-rg~~vd~~al~~al~~~~i~ga  257 (286)
                           -....++.|. +++.-- --.+-+.+.|.+..++.++...
T Consensus        82 -----~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~~  121 (184)
T d1ydwa1          82 -----WAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIM  121 (184)
T ss_dssp             -----HHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEE
T ss_pred             -----hhhhhhhccceeecccccccCHHHHHHHHHHHHhhCCEEE
Confidence                 1233344553 454321 2244566778888888776543

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.91  E-value=0.00079  Score=51.69  Aligned_cols=88  Identities=25%  Similarity=0.296  Sum_probs=55.0

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-------------C----cccccCHHHhhcCCCEEEEeccCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-------------S----YPFYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-------------~----~~~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      ++|+|||.|.+|.++|-.|...+. ++..+|...+...             .    .....+. +.+++||+|+++....
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~-~~~~~advvvitag~~   80 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcH-HHhcCCCEEEEeeecc
Confidence            589999999999999998876665 8888998765421             0    0112333 4578999999987422


Q ss_pred             --h-hhh-hcc--c----HHH---HhcCCCCcEEEEcCCC
Q 043239          211 --E-ETH-HMI--N----KDV---MTALGKEGVIINVGRG  237 (286)
Q Consensus       211 --~-~t~-~~i--~----~~~---l~~mk~g~ilvn~srg  237 (286)
                        + .++ .++  +    ++.   +....|.++++.++..
T Consensus        81 ~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNP  120 (142)
T d1uxja1          81 RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNP  120 (142)
T ss_dssp             ---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSS
T ss_pred             CCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCc
Confidence              1 111 111  1    121   2333678899988543

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.90  E-value=0.00051  Score=52.28  Aligned_cols=86  Identities=21%  Similarity=0.272  Sum_probs=63.8

Q ss_pred             cCCCCEEEEEcCC----------hHHHHHHHHhccCCCEEEEECCCCCCC--C--------------CcccccCHHHhhc
Q 043239          145 TLGGKRVGIVGLG----------SIGSEVAKRLVPFGCSIAYTSRKKKPG--V--------------SYPFYANVSGLAA  198 (286)
Q Consensus       145 ~l~g~~vgIiG~G----------~iG~~~A~~l~~~g~~V~~~~r~~~~~--~--------------~~~~~~~l~e~l~  198 (286)
                      ++.+++|+|+|+-          .-...+++.|...|++|.+||+.....  .              ......++.++++
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~   89 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVA   89 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHH
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhh
Confidence            3678899999974          578889999999999999999732211  0              1223578999999


Q ss_pred             CCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 043239          199 DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       199 ~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg  237 (286)
                      .+|+|+++++.. +-     ++....++++.+|+|+ ||
T Consensus        90 ~~D~ivi~t~h~-~f-----~~l~~~~~~~~~I~D~-~~  121 (136)
T d1mv8a3          90 SSDVLVLGNGDE-LF-----VDLVNKTPSGKKLVDL-VG  121 (136)
T ss_dssp             HCSEEEECSCCG-GG-----HHHHHSCCTTCEEEES-SS
T ss_pred             hceEEEEEeCCH-HH-----HHHHHHhcCCCEEEEC-CC
Confidence            999999998732 21     2445567788899998 44

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.90  E-value=0.00026  Score=55.76  Aligned_cols=93  Identities=18%  Similarity=0.271  Sum_probs=60.2

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC-------------C--cccccCHHHhhcCCCEEEEec
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV-------------S--YPFYANVSGLAADSDVLIVCC  207 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~-------------~--~~~~~~l~e~l~~aDiV~~~l  207 (286)
                      .+...+|+|||.|.+|..+|..+...|.  ++..+|...+...             .  ......-.+.+++||+|+++.
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitA   96 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTA   96 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEec
Confidence            3667899999999999999999998887  8999998754321             0  001122245688999998874


Q ss_pred             cCC--h-hhhh-cc--c----HH---HHhcCCCCcEEEEcCCC
Q 043239          208 ALT--E-ETHH-MI--N----KD---VMTALGKEGVIINVGRG  237 (286)
Q Consensus       208 p~~--~-~t~~-~i--~----~~---~l~~mk~g~ilvn~srg  237 (286)
                      ...  + +++. ++  |    ++   .+....+.++++.++..
T Consensus        97 g~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNP  139 (160)
T d1i0za1          97 GVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP  139 (160)
T ss_dssp             SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             CCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence            322  1 1221 11  1    11   12223778999999654

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=96.87  E-value=0.00075  Score=52.81  Aligned_cols=85  Identities=21%  Similarity=0.323  Sum_probs=54.8

Q ss_pred             CEEEEEcCChHHHH-HHHHhccCCC-EEE-EECCCCCCC-------CCcc-cccCHHHhh-----cCCCEEEEeccCChh
Q 043239          149 KRVGIVGLGSIGSE-VAKRLVPFGC-SIA-YTSRKKKPG-------VSYP-FYANVSGLA-----ADSDVLIVCCALTEE  212 (286)
Q Consensus       149 ~~vgIiG~G~iG~~-~A~~l~~~g~-~V~-~~~r~~~~~-------~~~~-~~~~l~e~l-----~~aDiV~~~lp~~~~  212 (286)
                      .++||||.|.||+. +.+.++.+.. ++. +.+|+.+..       .+.. ...++++++     .+.|+|+.++|....
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~h   84 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH   84 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchhH
Confidence            58999999999986 5677776644 654 557765431       1222 123344433     468999999874323


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCC
Q 043239          213 THHMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       213 t~~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                      ..   .+..+...+.|..+||.+.
T Consensus        85 ~~---~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          85 VQ---NEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             HH---HHHHHHHHCTTCEEEECST
T ss_pred             HH---hHHHHHHHHcCCEEEEccc
Confidence            22   2334556799999999975

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.85  E-value=0.003  Score=48.87  Aligned_cols=93  Identities=16%  Similarity=0.181  Sum_probs=65.4

Q ss_pred             CCCCEEEEEcC---ChHHHHHHHHhccCCCEEEEECC-CCCCCC---------CcccccCHHHhhcCCCEEEEeccCCh-
Q 043239          146 LGGKRVGIVGL---GSIGSEVAKRLVPFGCSIAYTSR-KKKPGV---------SYPFYANVSGLAADSDVLIVCCALTE-  211 (286)
Q Consensus       146 l~g~~vgIiG~---G~iG~~~A~~l~~~g~~V~~~~r-~~~~~~---------~~~~~~~l~e~l~~aDiV~~~lp~~~-  211 (286)
                      |.|++|++||=   |++..+++..+..+|+++.+..+ ......         .+....+++++++++|+|.+----.. 
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~~~q~~~   80 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER   80 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEeeeeehh
Confidence            57999999996   55999999999999998655433 222211         23345789999999999875321100 


Q ss_pred             ----------hhhhcccHHHHhcCCCCcEEEEcC-CCc
Q 043239          212 ----------ETHHMINKDVMTALGKEGVIINVG-RGA  238 (286)
Q Consensus       212 ----------~t~~~i~~~~l~~mk~g~ilvn~s-rg~  238 (286)
                                .....++.+.++.++++++|.-+. ||.
T Consensus        81 ~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~LPR~~  118 (153)
T d1pg5a2          81 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPLPRVN  118 (153)
T ss_dssp             SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCSCCSS
T ss_pred             ccchhHHHHHHHhhhhhHHHHhccCCCeEEecCCCCcC
Confidence                      022346888899999999998885 543

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.00054  Score=53.76  Aligned_cols=85  Identities=22%  Similarity=0.318  Sum_probs=60.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc---cccC---HHHhhcCCCEEEEeccCChhhhh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP---FYAN---VSGLAADSDVLIVCCALTEETHH  215 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~---~~~~---l~e~l~~aDiV~~~lp~~~~t~~  215 (286)
                      .|.+|.|+|.|.+|...++.++.+|+++++.+++.++..     +..   ...+   ..+..+..|+++-++.....   
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~~---  106 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN---  106 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCC---
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecchh---
Confidence            478999999999999999999999999888887766532     221   1111   12234568999988763321   


Q ss_pred             cccHHHHhcCCCCcEEEEcCC
Q 043239          216 MINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       216 ~i~~~~l~~mk~g~ilvn~sr  236 (286)
                        -...+..++++..++.++.
T Consensus       107 --~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2         107 --LDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             --HHHHHTTEEEEEEEEECCC
T ss_pred             --HHHHHHHHhcCCEEEEecc
Confidence              1356778889998888875

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=96.80  E-value=0.01  Score=48.60  Aligned_cols=122  Identities=15%  Similarity=0.212  Sum_probs=89.3

Q ss_pred             hHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCC---
Q 043239          107 GADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKK---  182 (286)
Q Consensus       107 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~---  182 (286)
                      +|--+++.+|+.+|-                    .+++|+..+|.|+|.|..|..+|+.+...+. +++.+|+..-   
T Consensus         5 TaaV~LAgll~a~~~--------------------~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~   64 (222)
T d1vl6a1           5 TAVVVSAAFLNALKL--------------------TEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNE   64 (222)
T ss_dssp             HHHHHHHHHHHHHHH--------------------HTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCT
T ss_pred             HHHHHHHHHHHHHHH--------------------hCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEc
Confidence            455677788887776                    2456899999999999999999999988777 6888887521   


Q ss_pred             -----CCC-----------CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 043239          183 -----PGV-----------SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELV  246 (286)
Q Consensus       183 -----~~~-----------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~  246 (286)
                           ...           ......++.+++..++++...-     +.+++.++....|.+..++.=.|+...--+..  
T Consensus        65 ~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~g~~-----~~~~~~~e~m~~~~~rPIIFpLSNPt~~~e~~--  137 (222)
T d1vl6a1          65 NDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVS-----RGNILKPEWIKKMSRKPVIFALANPVPEIDPE--  137 (222)
T ss_dssp             TSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECS-----CSSCSCHHHHTTSCSSCEEEECCSSSCSSCHH--
T ss_pred             CcccccccHHHHHHHhhhcchhhhcchHhhccCcceecccc-----ccccccHHHHhhcCCCCEEEecCCCccchhhh--
Confidence                 111           1112457889999999776542     57788888999999999999999876543332  


Q ss_pred             HHHHhCCee
Q 043239          247 HFLVRGSLV  255 (286)
Q Consensus       247 ~al~~~~i~  255 (286)
                      .+...|+..
T Consensus       138 ~a~~~G~ai  146 (222)
T d1vl6a1         138 LAREAGAFI  146 (222)
T ss_dssp             HHHHTTCSE
T ss_pred             hheeccceE
Confidence            445566654

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.77  E-value=0.00072  Score=46.56  Aligned_cols=35  Identities=23%  Similarity=0.421  Sum_probs=32.2

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      |+|||+|.|..|+.++.....+|++|.++++....
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            68999999999999999999999999999986543

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.74  E-value=0.0019  Score=51.17  Aligned_cols=102  Identities=19%  Similarity=0.183  Sum_probs=64.8

Q ss_pred             CEEEEEcCChHHHH-HHHHhccCC--CEEE-EECCCCCCCC------C-cccccCHHHhhc--CCCEEEEeccCChhhhh
Q 043239          149 KRVGIVGLGSIGSE-VAKRLVPFG--CSIA-YTSRKKKPGV------S-YPFYANVSGLAA--DSDVLIVCCALTEETHH  215 (286)
Q Consensus       149 ~~vgIiG~G~iG~~-~A~~l~~~g--~~V~-~~~r~~~~~~------~-~~~~~~l~e~l~--~aDiV~~~lp~~~~t~~  215 (286)
                      .++||||+|.+|+. .+..++..+  ++|. ++|++.+...      + ...+.+++|+++  +.|+|++++|.....  
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h~--   81 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNL--   81 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHH--
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeeccccccccc--
Confidence            48999999999987 477777654  4665 6788765432      2 224689999986  478899998854322  


Q ss_pred             cccHHHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHhCCee
Q 043239          216 MINKDVMTALGKE-GVIINVG-RGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       216 ~i~~~~l~~mk~g-~ilvn~s-rg~~vd~~al~~al~~~~i~  255 (286)
                      -+-...++   .| .+++.-- --++-+...|.+..++.+..
T Consensus        82 ~~~~~al~---~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~  120 (181)
T d1zh8a1          82 PFIEKALR---KGVHVICEKPISTDVETGKKVVELSEKSEKT  120 (181)
T ss_dssp             HHHHHHHH---TTCEEEEESSSSSSHHHHHHHHHHHHHCSSC
T ss_pred             cccccccc---cchhhhcCCCCcCCHHHHHHHHHHHHHhCCe
Confidence            22233333   33 4666542 22445666777777776554

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=96.68  E-value=0.001  Score=56.12  Aligned_cols=106  Identities=19%  Similarity=0.260  Sum_probs=69.3

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCC---CCCCcc----------------------------cccC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK---PGVSYP----------------------------FYAN  192 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~---~~~~~~----------------------------~~~~  192 (286)
                      .++.|+|+.|=|+|++|+.+|+.|...|++|++.+-+.-   ...+..                            ...+
T Consensus        32 ~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (255)
T d1bgva1          32 DTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFP  111 (255)
T ss_dssp             CCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceeec
Confidence            458999999999999999999999999999875532110   000000                            0011


Q ss_pred             HHHhh-cCCCEEEEeccCChhhhhcccHHHHhcCCC-Cc-EEEEcCCCcccCHHHHHHHHHhCCee
Q 043239          193 VSGLA-ADSDVLIVCCALTEETHHMINKDVMTALGK-EG-VIINVGRGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       193 l~e~l-~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~-g~-ilvn~srg~~vd~~al~~al~~~~i~  255 (286)
                      .++++ ..||+++-|     .+.+.|+.+..+.++. ++ +++-.+.+.+.++ +.-..|++++|.
T Consensus       112 ~~~~~~~~~DiliPc-----A~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~e-a~~~ll~~~gI~  171 (255)
T d1bgva1         112 GEKPWGQKVDIIMPC-----ATQNDVDLEQAKKIVANNVKYYIEVANMPTTNE-ALRFLMQQPNMV  171 (255)
T ss_dssp             TCCGGGSCCSEEECC-----SCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH-HHHHHHHCTTCE
T ss_pred             hhhcccccccEEeec-----cccccccHHHHHhhhhcCceEEecCCCCCcchH-HHHHHHHhcCCE
Confidence            12222 469988755     3677888888877754 44 6777777776554 444456666664

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.66  E-value=0.004  Score=48.72  Aligned_cols=104  Identities=17%  Similarity=0.169  Sum_probs=62.9

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCC----CEEEEE-CCCCCCCCCcccccCHHHhhc--CCCEEEEeccCChhhhhcccHH
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFG----CSIAYT-SRKKKPGVSYPFYANVSGLAA--DSDVLIVCCALTEETHHMINKD  220 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g----~~V~~~-~r~~~~~~~~~~~~~l~e~l~--~aDiV~~~lp~~~~t~~~i~~~  220 (286)
                      ..+|||||+|.||+..++.++...    ..+... ++............+++|++.  +.|+|++++|..  +..-+...
T Consensus         7 k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~~--~H~~~~~~   84 (172)
T d1lc0a1           7 KFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALRSQEIDVAYICSESS--SHEDYIRQ   84 (172)
T ss_dssp             SEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEETTEEBCCHHHHHHCSSEEEEEECSCGG--GHHHHHHH
T ss_pred             CcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchHHHHHhhccCcCCHHHHHhCCCcchhhhccccc--cccccccc
Confidence            448999999999999998888643    233322 222211112223558899886  468899998854  32222233


Q ss_pred             HHhcCCCCcEEEEcC-CCcccCHHHHHHHHHhCCee
Q 043239          221 VMTALGKEGVIINVG-RGALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       221 ~l~~mk~g~ilvn~s-rg~~vd~~al~~al~~~~i~  255 (286)
                      .++.=+  .+++.=- .-.+-+.+.|.+..++.+..
T Consensus        85 al~~gk--~V~~EKP~a~~~~e~~~l~~~a~~~~~~  118 (172)
T d1lc0a1          85 FLQAGK--HVLVEYPMTLSFAAAQELWELAAQKGRV  118 (172)
T ss_dssp             HHHTTC--EEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred             ccccch--hhhcCCCccccHHHHHHHHHHHHHcCCe
Confidence            444322  4666642 23566778888877766654

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=96.64  E-value=0.0032  Score=48.68  Aligned_cols=94  Identities=18%  Similarity=0.160  Sum_probs=67.5

Q ss_pred             cCCCCEEEEEcC---ChHHHHHHHHhccCCCEEEEECCCCCCCC------------CcccccCHHHhhcCCCEEEEeccC
Q 043239          145 TLGGKRVGIVGL---GSIGSEVAKRLVPFGCSIAYTSRKKKPGV------------SYPFYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       145 ~l~g~~vgIiG~---G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------------~~~~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      +|.|++|++||=   +++..+++..+..+|+++....+......            ......+++++++++|+|....-.
T Consensus         1 kl~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~~~   80 (157)
T d1ml4a2           1 RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQ   80 (157)
T ss_dssp             CSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCC
T ss_pred             CcCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeeccc
Confidence            378999999997   68999999999999999988876543222            122457899999999998775432


Q ss_pred             Chh-----------hhhcccHHHHhcCCCCcEEEEcC-CCc
Q 043239          210 TEE-----------THHMINKDVMTALGKEGVIINVG-RGA  238 (286)
Q Consensus       210 ~~~-----------t~~~i~~~~l~~mk~g~ilvn~s-rg~  238 (286)
                      ...           ....++.+.++.+++.+++.-+. ||.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~mHplPRg~  121 (157)
T d1ml4a2          81 KERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPLPRVD  121 (157)
T ss_dssp             GGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCSCCSS
T ss_pred             cccccchhhHHhhcchhccCHHHHhhcCCCeEEecCCCcCc
Confidence            111           11224566777788888888775 443

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.60  E-value=0.0083  Score=46.50  Aligned_cols=98  Identities=13%  Similarity=0.135  Sum_probs=66.9

Q ss_pred             CCCCEEEEEcC--ChHHHHHHHHhccCCCEEEEECCCCCCCC----------------CcccccCHHHhhcCCCEEEEec
Q 043239          146 LGGKRVGIVGL--GSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------SYPFYANVSGLAADSDVLIVCC  207 (286)
Q Consensus       146 l~g~~vgIiG~--G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~~~~~~~l~e~l~~aDiV~~~l  207 (286)
                      |.|++|+++|=  .++-.+++..+..+|+++....+..-...                ......+++++++.+|+|.+-.
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~   80 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV   80 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence            57999999994  57999999999999999998887532211                1223578999999999998754


Q ss_pred             cCChh------------hhh-cccHHHHhcCCCCcEEEEcC---CCcccCHH
Q 043239          208 ALTEE------------THH-MINKDVMTALGKEGVIINVG---RGALIDEK  243 (286)
Q Consensus       208 p~~~~------------t~~-~i~~~~l~~mk~g~ilvn~s---rg~~vd~~  243 (286)
                      --...            ... ..++.....+|++++|.-+.   ||.=|+.+
T Consensus        81 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~lP~~r~~Eis~~  132 (161)
T d1vlva2          81 WASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYE  132 (161)
T ss_dssp             CC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCHH
T ss_pred             eeeecccccchhhhccccceeeeehhhhcccCCCeeEecCCCcccccccchh
Confidence            21100            111 22333445578999999885   56545443

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.59  E-value=0.00048  Score=54.09  Aligned_cols=92  Identities=21%  Similarity=0.306  Sum_probs=58.9

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC-------------Cc---ccccCHHHhhcCCCEEEEe
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV-------------SY---PFYANVSGLAADSDVLIVC  206 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~-------------~~---~~~~~l~e~l~~aDiV~~~  206 (286)
                      .+...+|+|||.|.+|..+|..|...|.  ++..+|+..+...             +.   ....+. +.+++||+|+++
T Consensus        16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~-~~~~~adivvit   94 (159)
T d2ldxa1          16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY-NVSANSKLVIIT   94 (159)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG-GGGTTEEEEEEC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch-hhhccccEEEEe
Confidence            3566799999999999999999988776  7999997754311             10   112343 456899999887


Q ss_pred             ccC--Ch-hhhh-cc--c----HHH---HhcCCCCcEEEEcCCC
Q 043239          207 CAL--TE-ETHH-MI--N----KDV---MTALGKEGVIINVGRG  237 (286)
Q Consensus       207 lp~--~~-~t~~-~i--~----~~~---l~~mk~g~ilvn~srg  237 (286)
                      ...  .+ +++. ++  +    ++.   +....+++++++++..
T Consensus        95 ag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNP  138 (159)
T d2ldxa1          95 AGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNP  138 (159)
T ss_dssp             CSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSS
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCc
Confidence            532  11 1221 11  1    111   2223788999999763

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.0079  Score=47.01  Aligned_cols=91  Identities=13%  Similarity=0.113  Sum_probs=66.7

Q ss_pred             cCCCCEEEEEcCC-hHHHHHHHHhccCCCEEEEECCCCCCCC----------------CcccccCHHHhhcCCCEEEEec
Q 043239          145 TLGGKRVGIVGLG-SIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------SYPFYANVSGLAADSDVLIVCC  207 (286)
Q Consensus       145 ~l~g~~vgIiG~G-~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~~~~~~~l~e~l~~aDiV~~~l  207 (286)
                      +|.|++|+++|-| ++-.+++..+..+|+++.+..+..-...                ......++++.+..+|+|....
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~   80 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT   80 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeec
Confidence            3789999999965 4667777888889999998887543321                1224678999999999998764


Q ss_pred             cCChh------------hhhcccHHHHhcCCCCcEEEEcC
Q 043239          208 ALTEE------------THHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       208 p~~~~------------t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      -....            ....++.+.+..++++++|.-+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHpl  120 (170)
T d1otha2          81 WISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  120 (170)
T ss_dssp             SSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             eecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCC
Confidence            32211            12346778889999999999996

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.56  E-value=0.00044  Score=54.03  Aligned_cols=84  Identities=15%  Similarity=0.204  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc-----ccCHHH----hhcCCCEEEEeccCChh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF-----YANVSG----LAADSDVLIVCCALTEE  212 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~-----~~~l~e----~l~~aDiV~~~lp~~~~  212 (286)
                      .|.+|.|+|.|.+|...++.++.+|.+|++.++++++..     +...     ..+..+    .....|.++.+... ++
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~~-~~  105 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVS-NS  105 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCSC-HH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCccccccccc-ch
Confidence            477999999999999999999999999999998765421     2111     122222    23345566665542 22


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcC
Q 043239          213 THHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       213 t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      +   + ...++.++++..++.++
T Consensus       106 ~---~-~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2         106 A---F-GQAIGMARRGGTIALVG  124 (166)
T ss_dssp             H---H-HHHHTTEEEEEEEEECC
T ss_pred             H---H-HHHHHHhcCCcEEEEEE
Confidence            2   2 35678889999888886

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.55  E-value=0.00034  Score=55.71  Aligned_cols=84  Identities=15%  Similarity=0.137  Sum_probs=54.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-----Cccc-----ccCHHHh----h-----cCCCEEEEe
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-----SYPF-----YANVSGL----A-----ADSDVLIVC  206 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-----~~~~-----~~~l~e~----l-----~~aDiV~~~  206 (286)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++..     +...     ..+..+.    .     ...|+|+-+
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid~  107 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEA  107 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEEC
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEeec
Confidence            58899999999999999999999998 7999988765421     2110     1222221    1     126777777


Q ss_pred             ccCChhhhhcccHHHHhcCCCCcEEEEcC
Q 043239          207 CALTEETHHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       207 lp~~~~t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      +... .+    -+..++.++++..++-++
T Consensus       108 vG~~-~~----~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2         108 TGDS-RA----LLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             SSCT-TH----HHHHHHHEEEEEEEEECC
T ss_pred             CCch-hH----HHHHHHHhcCCCEEEEEe
Confidence            6432 11    134566677777766664

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=96.51  E-value=0.0014  Score=51.84  Aligned_cols=61  Identities=16%  Similarity=0.235  Sum_probs=43.3

Q ss_pred             CCEEEEEcCChHHHHHHH---Hhc--cC-CCEEEEECCCCCCCC-----------------CcccccCHHHhhcCCCEEE
Q 043239          148 GKRVGIVGLGSIGSEVAK---RLV--PF-GCSIAYTSRKKKPGV-----------------SYPFYANVSGLAADSDVLI  204 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~---~l~--~~-g~~V~~~~r~~~~~~-----------------~~~~~~~l~e~l~~aDiV~  204 (286)
                      +++|+|||.|.+|...+-   .++  .+ +.++..+|..+++..                 ......+.+|.+++||+|+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv   81 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   81 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence            469999999999976432   332  22 358999999765421                 1123468999999999999


Q ss_pred             Eecc
Q 043239          205 VCCA  208 (286)
Q Consensus       205 ~~lp  208 (286)
                      ++..
T Consensus        82 ~~~~   85 (171)
T d1obba1          82 NTAM   85 (171)
T ss_dssp             ECCC
T ss_pred             eecc
Confidence            8754

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.44  E-value=0.0008  Score=51.85  Aligned_cols=93  Identities=15%  Similarity=0.243  Sum_probs=58.7

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccCCC--EEEEECCCCCCCC--------Cc------ccccCHHHhhcCCCEEEEeccC--
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPFGC--SIAYTSRKKKPGV--------SY------PFYANVSGLAADSDVLIVCCAL--  209 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~--------~~------~~~~~l~e~l~~aDiV~~~lp~--  209 (286)
                      .+|+|||. |.+|+.+|..|...|.  ++..+|....+..        ..      ....+..+.+++||+|+++...  
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~   80 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCC
Confidence            48999995 9999999999998776  6888887543210        00      1124567889999999987442  


Q ss_pred             Ch-hhhh-cc--c----HHH---HhcCCCCcEEEEcCCCcccCHH
Q 043239          210 TE-ETHH-MI--N----KDV---MTALGKEGVIINVGRGALIDEK  243 (286)
Q Consensus       210 ~~-~t~~-~i--~----~~~---l~~mk~g~ilvn~srg~~vd~~  243 (286)
                      .+ +++. ++  |    ++.   +....|.++++.++.  ++|.-
T Consensus        81 ~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN--PvD~~  123 (144)
T d1mlda1          81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN--PVNST  123 (144)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS--CHHHH
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecC--chhhh
Confidence            21 1111 11  1    111   222378899999954  45543

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.42  E-value=0.0007  Score=52.16  Aligned_cols=88  Identities=11%  Similarity=0.241  Sum_probs=55.9

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC-------------C---cccccCHHHhhcCCCEEEEeccCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV-------------S---YPFYANVSGLAADSDVLIVCCALT  210 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~-------------~---~~~~~~l~e~l~~aDiV~~~lp~~  210 (286)
                      .+|+|||.|.+|..+|..+...|.  ++..+|..++...             .   .....+. +.+++||+|+++.-..
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG~~   80 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAGPR   80 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEecccc
Confidence            479999999999999998887665  8999998764321             0   0112343 5688999999975321


Q ss_pred             --h-hhh-hcc--cH-------HHHhcCCCCcEEEEcCCC
Q 043239          211 --E-ETH-HMI--NK-------DVMTALGKEGVIINVGRG  237 (286)
Q Consensus       211 --~-~t~-~~i--~~-------~~l~~mk~g~ilvn~srg  237 (286)
                        + +++ .++  |.       ..+....|.++++.++..
T Consensus        81 ~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNP  120 (143)
T d1llda1          81 QKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNP  120 (143)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSS
T ss_pred             cCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCc
Confidence              1 111 111  11       122334678899998643

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=96.41  E-value=0.0074  Score=46.36  Aligned_cols=102  Identities=23%  Similarity=0.308  Sum_probs=58.2

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCC----CEEEEECCC-C-CCCCCcc-----cc-cCHHHhhcCCCEEEEeccCChhhhh
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFG----CSIAYTSRK-K-KPGVSYP-----FY-ANVSGLAADSDVLIVCCALTEETHH  215 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g----~~V~~~~r~-~-~~~~~~~-----~~-~~l~e~l~~aDiV~~~lp~~~~t~~  215 (286)
                      ++||||| .|-.|+.+.++|....    .++..++.+ . .+.....     .. ..-.+.++++|++++|+|.. .+..
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~-~s~~   79 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGS-YTEK   79 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHH-HHHH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCch-HHHH
Confidence            5899998 7999999999876432    355544322 2 1111111     11 11224578999999999943 2332


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcc-----------cCHHHHHHHHHhCC
Q 043239          216 MINKDVMTALGKEGVIINVGRGAL-----------IDEKELVHFLVRGS  253 (286)
Q Consensus       216 ~i~~~~l~~mk~g~ilvn~srg~~-----------vd~~al~~al~~~~  253 (286)
                      +. ....+ ...+.++||.|..--           ++.+.+.+++++|.
T Consensus        80 ~~-~~l~~-~g~~~~VIDlSsdfR~~~dvpl~lPEiN~~~I~~a~~~~~  126 (147)
T d1mb4a1          80 VY-PALRQ-AGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGT  126 (147)
T ss_dssp             HH-HHHHH-TTCCSEEEESSSTTTTCTTEEEECHHHHHHHHHHHHHTTC
T ss_pred             Hh-HHHHH-cCCceEEEeCCccccccCCceEEeCCcCHHHHHHHHHcCC
Confidence            32 22222 233467888874321           45566667776643

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=96.38  E-value=0.0028  Score=49.07  Aligned_cols=89  Identities=15%  Similarity=0.259  Sum_probs=63.2

Q ss_pred             CCCEEEEEcC---ChHHHHHHHHhccCCCEEEEECCCCCCCC--CcccccCHHHhhcCCCEEEEeccCChh---------
Q 043239          147 GGKRVGIVGL---GSIGSEVAKRLVPFGCSIAYTSRKKKPGV--SYPFYANVSGLAADSDVLIVCCALTEE---------  212 (286)
Q Consensus       147 ~g~~vgIiG~---G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--~~~~~~~l~e~l~~aDiV~~~lp~~~~---------  212 (286)
                      .|.+|+++|=   +++..+++..+..+|+++.+..+..-...  ......+++++++++|+|.+--.-...         
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~~~~~~~~~~~~ea~~~aDviy~~r~q~e~~~~~~~~~~   81 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEENTFGTYVSMDEAVESSDVVMLLRIQNERHQSAVSQEG   81 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhccccceeEEEechhccccCceeeeeEEEEcccccchhhHH
Confidence            5889999996   68999999999999999988776543222  334567899999999998664221110         


Q ss_pred             --hhhcccHHHHhcCCCCcEEEEcC
Q 043239          213 --THHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       213 --t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                        ....++.+.+..++++++|.-+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~i~MH~L  106 (151)
T d2at2a2          82 YLNKYGLTVERAERMKRHAIIMHPA  106 (151)
T ss_pred             hhhhhcchhhhhhhcccCeEEecCC
Confidence              11123445666778888888874

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.0083  Score=46.00  Aligned_cols=101  Identities=17%  Similarity=0.235  Sum_probs=57.7

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccC-C---CEEEEECCCCCCC--CC-----cccccC-HHHhhcCCCEEEEeccCChhhhh
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPF-G---CSIAYTSRKKKPG--VS-----YPFYAN-VSGLAADSDVLIVCCALTEETHH  215 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~-g---~~V~~~~r~~~~~--~~-----~~~~~~-l~e~l~~aDiV~~~lp~~~~t~~  215 (286)
                      ++|||||. |.+|+.+.++|... .   .++..+.++....  ..     ...... -.+.++++|++++++|...+ ..
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s-~~   80 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYT-NE   80 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHH-HH
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchHH-HH
Confidence            58999996 99999999876543 2   2555554333221  11     111111 12357899999999984322 22


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcc-----------cCHHHHHHHHHhC
Q 043239          216 MINKDVMTALGKEGVIINVGRGAL-----------IDEKELVHFLVRG  252 (286)
Q Consensus       216 ~i~~~~l~~mk~g~ilvn~srg~~-----------vd~~al~~al~~~  252 (286)
                      + . ..+.....+.++||.|..--           |+.+.|..++++|
T Consensus        81 ~-~-~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g  126 (146)
T d1t4ba1          81 I-Y-PKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNG  126 (146)
T ss_dssp             H-H-HHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTT
T ss_pred             h-h-HHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcC
Confidence            2 1 22222334467889884332           3555677777763

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.36  E-value=0.00063  Score=52.98  Aligned_cols=85  Identities=13%  Similarity=0.242  Sum_probs=58.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc-----ccC----HHHhhcCCCEEEEeccCChh
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF-----YAN----VSGLAADSDVLIVCCALTEE  212 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~-----~~~----l~e~l~~aDiV~~~lp~~~~  212 (286)
                      .|.+|.|.|.|.||...++.++..|.+|++.+++.++..     +...     ..+    +.+.-...|.++.+.+ .++
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~  105 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV-SKP  105 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC-CHH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC-CHH
Confidence            478999999999999999999999999999988766532     2111     112    2333455666666544 333


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCC
Q 043239          213 THHMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       213 t~~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                      +   + ...+..++++..++.++-
T Consensus       106 ~---~-~~a~~~l~~~G~i~~~g~  125 (168)
T d1rjwa2         106 A---F-QSAYNSIRRGGACVLVGL  125 (168)
T ss_dssp             H---H-HHHHHHEEEEEEEEECCC
T ss_pred             H---H-HHHHHHhccCCceEeccc
Confidence            2   2 467777888888888763

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.36  E-value=0.0024  Score=50.88  Aligned_cols=61  Identities=20%  Similarity=0.296  Sum_probs=42.9

Q ss_pred             EEEEEcCChHHHHHHHHhccC-CCEEEEE-CCCCCCCC-----------------------CcccccCHHHhhcCCCEEE
Q 043239          150 RVGIVGLGSIGSEVAKRLVPF-GCSIAYT-SRKKKPGV-----------------------SYPFYANVSGLAADSDVLI  204 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~-g~~V~~~-~r~~~~~~-----------------------~~~~~~~l~e~l~~aDiV~  204 (286)
                      +|||.|+|+||+.++|.+... +++|++. ++++....                       +.....++.++++++|+|+
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi   82 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence            799999999999999999865 4677654 44432110                       0112246677788899999


Q ss_pred             EeccCC
Q 043239          205 VCCALT  210 (286)
Q Consensus       205 ~~lp~~  210 (286)
                      -|.|..
T Consensus        83 ecTG~f   88 (178)
T d1b7go1          83 DTTPNG   88 (178)
T ss_dssp             ECCSTT
T ss_pred             ECCCCc
Confidence            998854

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.35  E-value=0.00084  Score=52.68  Aligned_cols=99  Identities=12%  Similarity=0.088  Sum_probs=61.4

Q ss_pred             CEEEEEcCChHHHHHHHH--h---ccC-CCEEEEECCCCCCCC--------------CcccccCHHHhhcCCCEEEEecc
Q 043239          149 KRVGIVGLGSIGSEVAKR--L---VPF-GCSIAYTSRKKKPGV--------------SYPFYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~--l---~~~-g~~V~~~~r~~~~~~--------------~~~~~~~l~e~l~~aDiV~~~lp  208 (286)
                      ++|+|||.|.+|.+.+-.  +   ..+ +-++..+|..+++..              ......+.++.+++||+|+++.-
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~   80 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR   80 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence            589999999988776632  1   122 347999998765422              11123577889999999999865


Q ss_pred             CChh-----------hhhccc----------------------HHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 043239          209 LTEE-----------THHMIN----------------------KDVMTALGKEGVIINVGRGALIDEKELVHF  248 (286)
Q Consensus       209 ~~~~-----------t~~~i~----------------------~~~l~~mk~g~ilvn~srg~~vd~~al~~a  248 (286)
                      ....           ..+++.                      .+..+ ..|+++++|++..--+-+.++.+.
T Consensus        81 ~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~~~~-~~p~a~~i~vtNPvdiit~~~~~~  152 (162)
T d1up7a1          81 PGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVR-KTSNATIVNFTNPSGHITEFVRNY  152 (162)
T ss_dssp             TTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHH-HTTCCEEEECSSSHHHHHHHHHHT
T ss_pred             cCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhhhhc-cCCCeEEEEeCCHHHHHHHHHHHh
Confidence            3211           112211                      12222 258999999988854545555544

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.34  E-value=0.0067  Score=48.30  Aligned_cols=91  Identities=8%  Similarity=-0.007  Sum_probs=65.2

Q ss_pred             cCCCCEEEEEcC--ChHHHHHHHHhccCCCEEEEECCCCCCCC----------------CcccccCHHHhhcCCCEEEEe
Q 043239          145 TLGGKRVGIVGL--GSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------SYPFYANVSGLAADSDVLIVC  206 (286)
Q Consensus       145 ~l~g~~vgIiG~--G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~~~~~~~l~e~l~~aDiV~~~  206 (286)
                      .|.|.+|++||=  .++..+++..+..+|+++.+..+..-...                ......++++.++++|+|..-
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~   81 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD   81 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEee
Confidence            478999999994  48999999999999999999987442211                122457899999999999774


Q ss_pred             ccCC----hh---------h-hhcccHHHHhcCCCCcEEEEcC
Q 043239          207 CALT----EE---------T-HHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       207 lp~~----~~---------t-~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      .-..    ..         . ..+..+.....+|++++|.-+.
T Consensus        82 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L  124 (185)
T d1dxha2          82 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  124 (185)
T ss_dssp             CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             hhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence            3211    11         1 1222344556689999999886

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=96.29  E-value=0.0031  Score=48.26  Aligned_cols=88  Identities=14%  Similarity=0.257  Sum_probs=54.0

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCCC--EEEEECCCCCC--CC--------------Ccc-cccCHHHhhcCCCEEEEecc
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFGC--SIAYTSRKKKP--GV--------------SYP-FYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g~--~V~~~~r~~~~--~~--------------~~~-~~~~l~e~l~~aDiV~~~lp  208 (286)
                      .+|+||| .|.+|+.+|..+...+.  ++..+|.....  ..              ... ...+. +.+++||+|+++.-
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~-~~~~~aDiVvitaG   79 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY-EDTAGSDVVVITAG   79 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG-GGGTTCSEEEECCC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH-HHhhhcCEEEEecc
Confidence            3799999 69999999999987776  78889863221  10              011 11233 45689999998743


Q ss_pred             C--Chh-h--------hhccc--HHHHhcCCCCcEEEEcCCC
Q 043239          209 L--TEE-T--------HHMIN--KDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       209 ~--~~~-t--------~~~i~--~~~l~~mk~g~ilvn~srg  237 (286)
                      .  .+. +        ..++.  ...+....|.++++.++..
T Consensus        80 ~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNP  121 (142)
T d1o6za1          80 IPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNP  121 (142)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSS
T ss_pred             cccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecCh
Confidence            2  211 1        11111  1123445778999998554

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.15  E-value=0.0011  Score=52.41  Aligned_cols=84  Identities=15%  Similarity=0.174  Sum_probs=55.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-----Cccc-----ccCHHHhh------cCCCEEEEeccC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-----SYPF-----YANVSGLA------ADSDVLIVCCAL  209 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-----~~~~-----~~~l~e~l------~~aDiV~~~lp~  209 (286)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++..     +...     ..++.+.+      ...|+|+-+++.
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~  106 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGG  106 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSC
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCC
Confidence            47799999999999999999999998 7999998765432     2110     12222211      126888777653


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcC
Q 043239          210 TEETHHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       210 ~~~t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      ..    .+ +..+..++++..++-++
T Consensus       107 ~~----~~-~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2         107 SE----TL-SQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             TT----HH-HHHHHHEEEEEEEEECC
T ss_pred             HH----HH-HHHHHHHhcCCEEEEEe
Confidence            21    12 34556677777777765

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=96.09  E-value=0.0013  Score=54.12  Aligned_cols=103  Identities=13%  Similarity=0.113  Sum_probs=63.0

Q ss_pred             CCCEEEEEcCChHHHH-HHHHhccC-CCEEE-EECCCCCCCC------C-----cccccCHHHhhc--CCCEEEEeccCC
Q 043239          147 GGKRVGIVGLGSIGSE-VAKRLVPF-GCSIA-YTSRKKKPGV------S-----YPFYANVSGLAA--DSDVLIVCCALT  210 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~-~A~~l~~~-g~~V~-~~~r~~~~~~------~-----~~~~~~l~e~l~--~aDiV~~~lp~~  210 (286)
                      +.-+|||||+|.||+. ++..++.. +++|. ++|++.++..      +     ...+.|++++++  +.|+|++++|..
T Consensus        32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~  111 (221)
T d1h6da1          32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNS  111 (221)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGG
T ss_pred             CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchh
Confidence            4458999999999985 56666665 66776 6788765422      1     123578899886  478999998854


Q ss_pred             hhhhhcccHHHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHhCCe
Q 043239          211 EETHHMINKDVMTALGKE-GVIINVG-RGALIDEKELVHFLVRGSL  254 (286)
Q Consensus       211 ~~t~~~i~~~~l~~mk~g-~ilvn~s-rg~~vd~~al~~al~~~~i  254 (286)
                      ....  +..+.   |+.| .+++.-- -..+-+...|.+..++.+.
T Consensus       112 ~H~~--~~~~a---l~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~  152 (221)
T d1h6da1         112 LHAE--FAIRA---FKAGKHVMCEKPMATSVADCQRMIDAAKAANK  152 (221)
T ss_dssp             GHHH--HHHHH---HHTTCEEEECSSCCSSHHHHHHHHHHHHHHTC
T ss_pred             hhhh--HHHHh---hhcchhhhcCCCccCCHHHHHHHHHHHHhcCC
Confidence            3222  22223   3334 3555431 2344556666666665443

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.08  E-value=0.0031  Score=48.31  Aligned_cols=84  Identities=14%  Similarity=0.109  Sum_probs=50.5

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccCC---CEEEEECCCCCCCC--C--c--ccccC-HHHhhcCCCEEEEeccCChhhhhcc
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPFG---CSIAYTSRKKKPGV--S--Y--PFYAN-VSGLAADSDVLIVCCALTEETHHMI  217 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~g---~~V~~~~r~~~~~~--~--~--~~~~~-l~e~l~~aDiV~~~lp~~~~t~~~i  217 (286)
                      ++|||+|. |-.|+++.+.|...+   .++.....+...-.  .  .  ....+ -.+.+.++|++++++|.. .+..+.
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~-~s~~~~   81 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAE-VSRAHA   81 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHH-HHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcc-hhhhhc
Confidence            68999986 999999999996443   35654432221111  0  0  01112 224568899999999843 222222


Q ss_pred             cHHHHhcCCCCcEEEEcCCC
Q 043239          218 NKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       218 ~~~~l~~mk~g~ilvn~srg  237 (286)
                       ..   ..+.|..+||.|..
T Consensus        82 -~~---~~~~g~~VID~Ss~   97 (144)
T d2hjsa1          82 -ER---ARAAGCSVIDLSGA   97 (144)
T ss_dssp             -HH---HHHTTCEEEETTCT
T ss_pred             -cc---cccCCceEEeechh
Confidence             22   23578999999743

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.98  E-value=0.0083  Score=49.53  Aligned_cols=64  Identities=22%  Similarity=0.210  Sum_probs=47.2

Q ss_pred             cCCCCEEEEEcCC-hHHHHHHHHhccCCCEEEEECCCCCCCCCcc-------cc-------cCHHHhhcCCCEEEEecc
Q 043239          145 TLGGKRVGIVGLG-SIGSEVAKRLVPFGCSIAYTSRKKKPGVSYP-------FY-------ANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       145 ~l~g~~vgIiG~G-~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~-------~~-------~~l~e~l~~aDiV~~~lp  208 (286)
                      .|+||++.|.|.+ .||+++|+.|...|++|.+.+|+.+......       ..       ....+-+..-|+++.+..
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnAG   82 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAG   82 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEECS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCceEEEEecCCHHHHHHHHHHHHHhcCCceEEEeeec
Confidence            5899999999876 5999999999999999999999877654321       11       112223456899988753

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.96  E-value=0.025  Score=44.61  Aligned_cols=92  Identities=24%  Similarity=0.295  Sum_probs=59.6

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCC-CEEEEE-CCCCCCCC---------C--cccccCHHHhhcCCCEEEEeccCChhhh
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFG-CSIAYT-SRKKKPGV---------S--YPFYANVSGLAADSDVLIVCCALTEETH  214 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g-~~V~~~-~r~~~~~~---------~--~~~~~~l~e~l~~aDiV~~~lp~~~~t~  214 (286)
                      .+|||+| .|-.|+.+.+.|..+- +++... +++.....         .  .....+.+++..++|++++++|...+. 
T Consensus         2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s~-   80 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGASY-   80 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHHH-
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHHH-
Confidence            4899999 6999999999998754 366543 33322111         0  112346677778899999999965432 


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 043239          215 HMINKDVMTALGKEGVIINVGRGALIDEKELVH  247 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~  247 (286)
                           +..... .+..+||.|..=-.+....++
T Consensus        81 -----~~~~~~-~~~~VIDlSadfRl~~~~~y~  107 (176)
T d1vkna1          81 -----DLVREL-KGVKIIDLGADFRFDDPGVYR  107 (176)
T ss_dssp             -----HHHTTC-CSCEEEESSSTTTCSSHHHHH
T ss_pred             -----HHHHhh-ccceEEecCccccccchhhHH
Confidence                 222333 578999999765555444443

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.91  E-value=0.0038  Score=51.13  Aligned_cols=35  Identities=29%  Similarity=0.422  Sum_probs=32.3

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      ||+|.|||.|.-|...|..|+..|++|++++++..
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~   35 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGK   35 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            68999999999999999999999999999987653

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0019  Score=53.96  Aligned_cols=40  Identities=23%  Similarity=0.284  Sum_probs=35.5

Q ss_pred             ccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCC
Q 043239          144 STLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      ++|.||++.|-|.+. ||+++|+.|...|++|+..+|+.++
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~   43 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHG   43 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            359999999999766 9999999999999999999997644

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.87  E-value=0.0048  Score=45.38  Aligned_cols=38  Identities=26%  Similarity=0.352  Sum_probs=34.0

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV  185 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~  185 (286)
                      .++|.|||.|.+|-++|..|+.+|.+|+++.|...-..
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~   59 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR   59 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhccccc
Confidence            47899999999999999999999999999998776543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.87  E-value=0.0045  Score=45.85  Aligned_cols=37  Identities=27%  Similarity=0.434  Sum_probs=33.6

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV  185 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~  185 (286)
                      +++.|||.|.||-++|..|..+|++|+++.+.+....
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~   60 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA   60 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEeccccch
Confidence            6999999999999999999999999999998776543

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0043  Score=51.26  Aligned_cols=40  Identities=25%  Similarity=0.264  Sum_probs=35.0

Q ss_pred             ccCCCCEEEEEcCC-hHHHHHHHHhccCCCEEEEECCCCCC
Q 043239          144 STLGGKRVGIVGLG-SIGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       144 ~~l~g~~vgIiG~G-~iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      ++|+||++.|.|.+ .||.++|+.|.+.|++|+..+|+.+.
T Consensus         1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~   41 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSG   41 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            46999999999864 59999999999999999999987644

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.85  E-value=0.0039  Score=49.06  Aligned_cols=100  Identities=11%  Similarity=0.043  Sum_probs=61.3

Q ss_pred             CEEEEEcCChHH--HHHHHHhcc---CC-CEEEEECCCCCCCC---------------C----cccccCHHHhhcCCCEE
Q 043239          149 KRVGIVGLGSIG--SEVAKRLVP---FG-CSIAYTSRKKKPGV---------------S----YPFYANVSGLAADSDVL  203 (286)
Q Consensus       149 ~~vgIiG~G~iG--~~~A~~l~~---~g-~~V~~~~r~~~~~~---------------~----~~~~~~l~e~l~~aDiV  203 (286)
                      ++|.|||.|+.|  ..++..++.   +. -++..+|.......               +    .....+..+.+++||+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            589999999776  444444443   32 37899998764311               0    11246778889999999


Q ss_pred             EEeccCChhh-----------hhc--------------------cc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 043239          204 IVCCALTEET-----------HHM--------------------IN--KDVMTALGKEGVIINVGRGALIDEKELVHF  248 (286)
Q Consensus       204 ~~~lp~~~~t-----------~~~--------------------i~--~~~l~~mk~g~ilvn~srg~~vd~~al~~a  248 (286)
                      +++.......           .++                    +.  .+.+....|+++++|++..--+-..++.+.
T Consensus        82 v~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtNPvdv~t~~~~k~  159 (169)
T d1s6ya1          82 TTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRY  159 (169)
T ss_dssp             EECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHH
T ss_pred             EEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCChHHHHHHHHHHH
Confidence            9997643210           000                    10  122334579999999987754445555554

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=95.81  E-value=0.0036  Score=52.48  Aligned_cols=38  Identities=26%  Similarity=0.431  Sum_probs=34.3

Q ss_pred             cCCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      +|+||++.|.| .+.||+++|+.|...|++|...+|+.+
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~   41 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEK   41 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            58999999999 677999999999999999999998753

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=95.81  E-value=0.0052  Score=48.49  Aligned_cols=62  Identities=19%  Similarity=0.324  Sum_probs=40.9

Q ss_pred             CEEEEEcCChHHHHHHHHhccCC-CEEEEE-CCCCCCCC------C------------------cccccCHHHhhcCCCE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFG-CSIAYT-SRKKKPGV------S------------------YPFYANVSGLAADSDV  202 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g-~~V~~~-~r~~~~~~------~------------------~~~~~~l~e~l~~aDi  202 (286)
                      ++|||-|+|+||+.+.|.+...+ ++|+.. ++++....      +                  .....+..++++++|+
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv   81 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCE
Confidence            58999999999999999887654 576644 44432110      0                  0011245667788888


Q ss_pred             EEEeccCC
Q 043239          203 LIVCCALT  210 (286)
Q Consensus       203 V~~~lp~~  210 (286)
                      |+=|.|.-
T Consensus        82 ViEcTG~f   89 (171)
T d1cf2o1          82 VIDCTPEG   89 (171)
T ss_dssp             EEECCSTT
T ss_pred             EEEccCCC
Confidence            88887754

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.77  E-value=0.0045  Score=45.25  Aligned_cols=38  Identities=21%  Similarity=0.284  Sum_probs=33.7

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV  185 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~  185 (286)
                      .+++.|||.|.+|.++|..+..+|.+|+++.+...-..
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~   59 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS   59 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecceecc
Confidence            37999999999999999999999999999988776543

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.014  Score=45.18  Aligned_cols=91  Identities=12%  Similarity=0.197  Sum_probs=63.9

Q ss_pred             cCCCCEEEEEcC---ChHHHHHHHHhccCCC-EEEEECCCCCCCC------------CcccccCHHHhhcCCCEEEEecc
Q 043239          145 TLGGKRVGIVGL---GSIGSEVAKRLVPFGC-SIAYTSRKKKPGV------------SYPFYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       145 ~l~g~~vgIiG~---G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~------------~~~~~~~l~e~l~~aDiV~~~lp  208 (286)
                      ++.|.+|+++|=   |++..+++..+..+|. .+.+..+......            ......+++++++++|+|.....
T Consensus         1 kl~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~   80 (160)
T d1ekxa2           1 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV   80 (160)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCC
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeecc
Confidence            367999999996   6699999999999975 4556655433221            12245788999999999976532


Q ss_pred             CChh----------hhhcccHHHHhcCCCCcEEEEcC
Q 043239          209 LTEE----------THHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       209 ~~~~----------t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      ..+.          ....++++.+..++++++|.-+.
T Consensus        81 ~~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHcL  117 (160)
T d1ekxa2          81 QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  117 (160)
T ss_dssp             CGGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECCS
T ss_pred             cccccchHHHHHHHHHhhccHHHHHhcCcceeeecCC
Confidence            2111          12334667788899999998885

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.0054  Score=44.88  Aligned_cols=37  Identities=27%  Similarity=0.363  Sum_probs=33.4

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV  185 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~  185 (286)
                      +++.|||.|.+|-++|..|+.+|.+|+++.+.+....
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~   58 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP   58 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchhhh
Confidence            6899999999999999999999999999998776543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.0034  Score=52.49  Aligned_cols=40  Identities=23%  Similarity=0.441  Sum_probs=35.3

Q ss_pred             cccCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          143 GSTLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       143 ~~~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      |.+|+||++.|-|. +.||+++|+.|...|++|.+.+|+.+
T Consensus         1 g~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   41 (250)
T d1ydea1           1 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDES   41 (250)
T ss_dssp             CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            45799999999985 78999999999999999999998643

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.73  E-value=0.0058  Score=48.24  Aligned_cols=33  Identities=30%  Similarity=0.423  Sum_probs=25.3

Q ss_pred             CEEEEEcCChHHHHHHHHhccC-CCEEEE-ECCCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF-GCSIAY-TSRKK  181 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~-g~~V~~-~~r~~  181 (286)
                      .+|||.|+|+||+.+++.+... .++|+. .+.++
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~   37 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKP   37 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSC
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCC
Confidence            4899999999999999988754 467654 44443

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.72  E-value=0.0025  Score=48.99  Aligned_cols=59  Identities=22%  Similarity=0.255  Sum_probs=42.0

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccCCC--EEEEECCCCCCC--C-------------C--cc---cccCHHHhhcCCCEEEE
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPFGC--SIAYTSRKKKPG--V-------------S--YP---FYANVSGLAADSDVLIV  205 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~g~--~V~~~~r~~~~~--~-------------~--~~---~~~~l~e~l~~aDiV~~  205 (286)
                      ++|+|||. |.+|+.+|..+...|.  ++..+|+.....  .             .  ..   ...+-.+.+++||+|++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi   80 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence            58999995 9999999999998885  888898764211  0             0  00   01223457889999999


Q ss_pred             ec
Q 043239          206 CC  207 (286)
Q Consensus       206 ~l  207 (286)
                      +.
T Consensus        81 tA   82 (145)
T d1hyea1          81 TS   82 (145)
T ss_dssp             CC
T ss_pred             ec
Confidence            84

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.69  E-value=0.0027  Score=48.70  Aligned_cols=81  Identities=5%  Similarity=0.026  Sum_probs=52.1

Q ss_pred             EEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC---------CCccc-------ccCHHHh-hcCCCEEEEeccCChh
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG---------VSYPF-------YANVSGL-AADSDVLIVCCALTEE  212 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~---------~~~~~-------~~~l~e~-l~~aDiV~~~lp~~~~  212 (286)
                      ++.|+|+|.+|+.+++.|...|.+|++.+..++..         .++..       ...|+++ +.+||.|+++++....
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~   84 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD   84 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHH
Confidence            58999999999999999999999998887765321         12111       1223332 6789999998875444


Q ss_pred             hhhcccHHHHhcCCCCc-EEE
Q 043239          213 THHMINKDVMTALGKEG-VII  232 (286)
Q Consensus       213 t~~~i~~~~l~~mk~g~-ilv  232 (286)
                      +...  ......+.+.. +++
T Consensus        85 n~~~--~~~~r~~~~~~~iia  103 (153)
T d1id1a_          85 NAFV--VLSAKDMSSDVKTVL  103 (153)
T ss_dssp             HHHH--HHHHHHHTSSSCEEE
T ss_pred             HHHH--HHHHHHhCCCCceEE
Confidence            3322  23444444543 444

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.66  E-value=0.0032  Score=49.43  Aligned_cols=37  Identities=16%  Similarity=0.288  Sum_probs=32.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKP  183 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~  183 (286)
                      .+++|.|||.|..|...|..|+..|+ +|++++++...
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV   40 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence            47899999999999999999999999 59999887653

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.64  E-value=0.0083  Score=47.34  Aligned_cols=93  Identities=17%  Similarity=0.228  Sum_probs=57.9

Q ss_pred             CEEEEEc-CChHHHHHHHHhccC-CCEEEE-ECCCCCCCCC-----------------cccccCHHHhhcCCCEEEEecc
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPF-GCSIAY-TSRKKKPGVS-----------------YPFYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~-g~~V~~-~~r~~~~~~~-----------------~~~~~~l~e~l~~aDiV~~~lp  208 (286)
                      ++|+|+| .|-.|+++.+.|..+ .+++.. +.++.+...+                 .....+......++|++++++|
T Consensus         2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp   81 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATA   81 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSC
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecccc
Confidence            5899999 899999999999987 557653 3322221111                 0112344455678999999998


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 043239          209 LTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELV  246 (286)
Q Consensus       209 ~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~  246 (286)
                      ...+.. +    .-...+.+..+||.|..--.+....+
T Consensus        82 ~~~s~~-~----~~~~~~~~~~vIDlSadfRl~~~~~~  114 (179)
T d2g17a1          82 HEVSHD-L----APQFLQAGCVVFDLSGAFRVNDRAFY  114 (179)
T ss_dssp             HHHHHH-H----HHHHHHTTCEEEECSSTTSSSCHHHH
T ss_pred             chhHHH-H----hhhhhhcCceeecccccccccccccc
Confidence            432211 1    12224578999999876555444443

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.63  E-value=0.0078  Score=47.75  Aligned_cols=41  Identities=17%  Similarity=0.226  Sum_probs=36.2

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCC
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      -+...+|+|+|||.|..|-+.|..|+..|++|+++++....
T Consensus        38 ~~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          38 LPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI   78 (179)
T ss_dssp             CSCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCcc
Confidence            34567899999999999999999999999999999987643

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.62  E-value=0.0024  Score=50.19  Aligned_cols=85  Identities=18%  Similarity=0.083  Sum_probs=57.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCE-EEEECCCCCCCC-----Ccc-----cccCHHHhhc-----CCCEEEEeccCC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKKPGV-----SYP-----FYANVSGLAA-----DSDVLIVCCALT  210 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~-V~~~~r~~~~~~-----~~~-----~~~~l~e~l~-----~aDiV~~~lp~~  210 (286)
                      .|.+|.|+|.|.+|...++.++.+|.+ |.+.++++++..     +..     ...++.+.+.     ..|+|+-|+.. 
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~-  106 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGS-  106 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCC-
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCc-
Confidence            588999999999999999999999985 456676654321     211     1123433322     27999888752 


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCC
Q 043239          211 EETHHMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       211 ~~t~~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                      +++.    +..+..++++..++.++-
T Consensus       107 ~~~~----~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2         107 PEIL----KQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             HHHH----HHHHHTEEEEEEEEECCC
T ss_pred             HHHH----HHHHhcccCceEEEEEee
Confidence            2222    356777899998888764

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.60  E-value=0.0028  Score=49.71  Aligned_cols=83  Identities=16%  Similarity=0.295  Sum_probs=58.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc---ccCHH-H--hhcCCCEEEEeccCChhhh
Q 043239          147 GGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF---YANVS-G--LAADSDVLIVCCALTEETH  214 (286)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~---~~~l~-e--~l~~aDiV~~~lp~~~~t~  214 (286)
                      .|++|.|.|. |.+|....+.++.+|++|++.++++++..     ++..   +.+.. +  ....+|+|+-+..  +.  
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G--~~--  102 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG--KE--  102 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSC--TT--
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccc--hh--
Confidence            5789999995 99999999999999999998887765432     2221   12221 1  2356899988654  11  


Q ss_pred             hcccHHHHhcCCCCcEEEEcCC
Q 043239          215 HMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       215 ~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                        + .+.++.++++..+|.++.
T Consensus       103 --~-~~~~~~l~~~G~~v~~G~  121 (171)
T d1iz0a2         103 --V-EESLGLLAHGGRLVYIGA  121 (171)
T ss_dssp             --H-HHHHTTEEEEEEEEEC--
T ss_pred             --H-HHHHHHHhcCCcEEEEeC
Confidence              2 467888999999998863

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=95.60  E-value=0.045  Score=43.08  Aligned_cols=87  Identities=16%  Similarity=0.261  Sum_probs=53.1

Q ss_pred             CCEEEEEc-CChHHHHHHHHhccCC-CEEEEE-CCCCCCCC-----------C-cccccCHHHhhcCCCEEEEeccCChh
Q 043239          148 GKRVGIVG-LGSIGSEVAKRLVPFG-CSIAYT-SRKKKPGV-----------S-YPFYANVSGLAADSDVLIVCCALTEE  212 (286)
Q Consensus       148 g~~vgIiG-~G~iG~~~A~~l~~~g-~~V~~~-~r~~~~~~-----------~-~~~~~~l~e~l~~aDiV~~~lp~~~~  212 (286)
                      ..+|||+| .|-.|+++.+.|..+- +++... +++.....           . .......++.+.++|++++++|...+
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~s   84 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGTT   84 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSHH
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccchH
Confidence            45899999 6999999999999863 365543 33322111           0 00112234567899999999996533


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCccc
Q 043239          213 THHMINKDVMTALGKEGVIINVGRGALI  240 (286)
Q Consensus       213 t~~~i~~~~l~~mk~g~ilvn~srg~~v  240 (286)
                            .+....+.....+|+.+.+.-.
T Consensus        85 ------~~~~~~l~~~~~~v~~~~~~~~  106 (183)
T d2cvoa1          85 ------QEIIKGLPQELKIVDLSADFRL  106 (183)
T ss_dssp             ------HHHHHTSCSSCEEEECSSTTTC
T ss_pred             ------HHHHHHHHhcCcccccchhhhc
Confidence                  2333445555566666555443

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.0044  Score=48.47  Aligned_cols=97  Identities=16%  Similarity=0.180  Sum_probs=56.6

Q ss_pred             CCEEEEEcC-ChHHHHHHHHhcc-CCCEEE-EECCCCCCCC-------------CcccccCHHHhhcCCCEEEEeccCCh
Q 043239          148 GKRVGIVGL-GSIGSEVAKRLVP-FGCSIA-YTSRKKKPGV-------------SYPFYANVSGLAADSDVLIVCCALTE  211 (286)
Q Consensus       148 g~~vgIiG~-G~iG~~~A~~l~~-~g~~V~-~~~r~~~~~~-------------~~~~~~~l~e~l~~aDiV~~~lp~~~  211 (286)
                      ..+|+|.|+ |+||+.+++.+.. -++++. ++++...+..             +.....++++++..+|+|+=... .+
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs~-p~   82 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTR-PE   82 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSC-HH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEecc-HH
Confidence            458999995 9999999998875 467764 5666543321             12234677888899999876532 12


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 043239          212 ETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFL  249 (286)
Q Consensus       212 ~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al  249 (286)
                      .+...+.  .  ..+.+.-+|--.+|=--++...++.+
T Consensus        83 ~~~~~~~--~--a~~~~~~~ViGTTG~~~~~~~~i~~~  116 (162)
T d1diha1          83 GTLNHLA--F--CRQHGKGMVIGTTGFDEAGKQAIRDA  116 (162)
T ss_dssp             HHHHHHH--H--HHHTTCEEEECCCCCCHHHHHHHHHH
T ss_pred             HHHHHHH--H--HHhccceeEEecCCCcHHHHHHHHHH
Confidence            2332221  1  12344445555566322333444443

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.47  E-value=0.021  Score=44.72  Aligned_cols=85  Identities=18%  Similarity=0.161  Sum_probs=58.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-----Ccc------ccc-CHHHhh-----cCCCEEEEecc
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-----SYP------FYA-NVSGLA-----ADSDVLIVCCA  208 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-----~~~------~~~-~l~e~l-----~~aDiV~~~lp  208 (286)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.++++++..     +..      ... ...+..     ...|+++-|+.
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G  107 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  107 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEecc
Confidence            57899999999999999999999998 6888888876532     211      111 122222     45799988876


Q ss_pred             CChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 043239          209 LTEETHHMINKDVMTALGKE-GVIINVGR  236 (286)
Q Consensus       209 ~~~~t~~~i~~~~l~~mk~g-~ilvn~sr  236 (286)
                      . +++    ..+.+..++++ ..++-++-
T Consensus       108 ~-~~~----~~~a~~~~~~g~G~~v~vG~  131 (174)
T d1e3ia2         108 T-AQT----LKAAVDCTVLGWGSCTVVGA  131 (174)
T ss_dssp             C-HHH----HHHHHHTBCTTTCEEEECCC
T ss_pred             c-chH----HHHHHHHhhcCCeEEEecCC
Confidence            3 222    24567778885 67777763

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.47  E-value=0.01  Score=43.28  Aligned_cols=39  Identities=18%  Similarity=0.074  Sum_probs=34.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG  184 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~  184 (286)
                      ..+++|.|+|.|.+|-++|..|+.+|.+|..+.+.+...
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l   58 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK   58 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh
Confidence            347899999999999999999999999999999876544

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.0079  Score=44.56  Aligned_cols=37  Identities=32%  Similarity=0.320  Sum_probs=33.5

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV  185 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~  185 (286)
                      +++.|||.|.+|-++|..|+.+|.+|+++.|+..-..
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~   59 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR   59 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecccccc
Confidence            6899999999999999999999999999999775543

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=95.39  E-value=0.0079  Score=50.22  Aligned_cols=86  Identities=22%  Similarity=0.228  Sum_probs=52.7

Q ss_pred             cCCCCEEEEEcC-C--hHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239          145 TLGGKRVGIVGL-G--SIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV  221 (286)
Q Consensus       145 ~l~g~~vgIiG~-G--~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~  221 (286)
                      .|+||++.|.|. |  .||.++|+.|...|++|+..+|+.+..   .....+.+....+.++..-+....+...+++ +.
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~---~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~-~~   77 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLE---KRVRPIAQELNSPYVYELDVSKEEHFKSLYN-SV   77 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTH---HHHHHHHHHTTCCCEEECCTTCHHHHHHHHH-HH
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHHhhCCceeEeeecccchhhHHHHHH-HH
Confidence            388999999996 4  499999999999999999999874321   1122333444555555444444444444443 33


Q ss_pred             HhcCCCCcEEEEc
Q 043239          222 MTALGKEGVIINV  234 (286)
Q Consensus       222 l~~mk~g~ilvn~  234 (286)
                      .+.+.+-.++||.
T Consensus        78 ~~~~g~id~lV~n   90 (274)
T d2pd4a1          78 KKDLGSLDFIVHS   90 (274)
T ss_dssp             HHHTSCEEEEEEC
T ss_pred             HHHcCCCCeEEee
Confidence            3434333344443

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.38  E-value=0.015  Score=48.38  Aligned_cols=63  Identities=22%  Similarity=0.179  Sum_probs=45.4

Q ss_pred             CCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC-------------Cc-------ccccCHHHhhcCCCEEEEe
Q 043239          148 GKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------------SY-------PFYANVSGLAADSDVLIVC  206 (286)
Q Consensus       148 g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------------~~-------~~~~~l~e~l~~aDiV~~~  206 (286)
                      .++|.|.| .|.+|+.+++.|.+.|++|++.+|+.....             ++       ....++.+.+..++.++.+
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~   82 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   82 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhh
Confidence            35799999 599999999999999999999998765422             11       1123345567788888777


Q ss_pred             ccCC
Q 043239          207 CALT  210 (286)
Q Consensus       207 lp~~  210 (286)
                      .+..
T Consensus        83 ~~~~   86 (312)
T d1qyda_          83 LAGG   86 (312)
T ss_dssp             CCCS
T ss_pred             hhhc
Confidence            6543

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.38  E-value=0.0076  Score=44.28  Aligned_cols=37  Identities=22%  Similarity=0.370  Sum_probs=32.9

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG  184 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~  184 (286)
                      .+++.|||.|.||-++|..|+.+|.+|++..++..-.
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll   58 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL   58 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccC
Confidence            4789999999999999999999999999888776543

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.38  E-value=0.0083  Score=44.29  Aligned_cols=37  Identities=27%  Similarity=0.318  Sum_probs=33.7

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG  184 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~  184 (286)
                      ++++.|||.|.+|-++|..|+..|.+|+++.+++...
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l   66 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM   66 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeeccccc
Confidence            5799999999999999999999999999999877654

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.34  E-value=0.014  Score=45.73  Aligned_cols=86  Identities=17%  Similarity=0.114  Sum_probs=56.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-----Ccc------cccC-HHH---hh--cCCCEEEEec
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-----SYP------FYAN-VSG---LA--ADSDVLIVCC  207 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-----~~~------~~~~-l~e---~l--~~aDiV~~~l  207 (286)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.|++.++.+     +..      ...+ .++   ..  ...|+++.++
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~  107 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVI  107 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECS
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeC
Confidence            358899999999999999999999996 8999999887642     211      1111 221   12  4589888886


Q ss_pred             cCChhhhhcccHHHHhcC-CCCcEEEEcCC
Q 043239          208 ALTEETHHMINKDVMTAL-GKEGVIINVGR  236 (286)
Q Consensus       208 p~~~~t~~~i~~~~l~~m-k~g~ilvn~sr  236 (286)
                      ......     ...+..+ +.+..+|.++-
T Consensus       108 g~~~~~-----~~a~~~~~~~~G~~v~vG~  132 (176)
T d1d1ta2         108 GHLETM-----IDALASCHMNYGTSVVVGV  132 (176)
T ss_dssp             CCHHHH-----HHHHTTSCTTTCEEEECSC
T ss_pred             CchHHH-----HHHHHHhhcCCeEEEEEEc
Confidence            532221     2334445 44477888764

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.32  E-value=0.0078  Score=46.09  Aligned_cols=89  Identities=15%  Similarity=0.181  Sum_probs=53.6

Q ss_pred             CEEEEEcC-ChHHHHHHHHhc-c--CCCEEEEECCCCCCCC------C---cc-----cccCHHHhhcCCCEEEEeccC-
Q 043239          149 KRVGIVGL-GSIGSEVAKRLV-P--FGCSIAYTSRKKKPGV------S---YP-----FYANVSGLAADSDVLIVCCAL-  209 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~-~--~g~~V~~~~r~~~~~~------~---~~-----~~~~l~e~l~~aDiV~~~lp~-  209 (286)
                      ++|+|||. |.+|..+|-.|. .  +.-++..+|..+....      .   ..     ...+..+.+++||+|+++.-. 
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~   80 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVR   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCcc
Confidence            58999995 999999998764 3  4568999997542210      0   00     112334578899999998532 


Q ss_pred             -Chh-hh-hcc--c----H---HHHhcCCCCcEEEEcCCC
Q 043239          210 -TEE-TH-HMI--N----K---DVMTALGKEGVIINVGRG  237 (286)
Q Consensus       210 -~~~-t~-~~i--~----~---~~l~~mk~g~ilvn~srg  237 (286)
                       .+. ++ .++  |    +   +.+....|.++++.++..
T Consensus        81 ~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNP  120 (145)
T d2cmda1          81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP  120 (145)
T ss_dssp             CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCC
Confidence             221 11 111  1    1   123334678899999554

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.29  E-value=0.0092  Score=44.07  Aligned_cols=37  Identities=24%  Similarity=0.361  Sum_probs=33.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      .+++|.|||.|.+|-++|..|...|.+|+++.+....
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP   65 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence            4679999999999999999999999999999887654

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.28  E-value=0.0091  Score=46.00  Aligned_cols=85  Identities=16%  Similarity=0.234  Sum_probs=52.8

Q ss_pred             CCEEEEEcC-ChHHHHHHHHhccCCC---EEEEECCCCCCCC-------CcccccCHHHhhcCCCEEEEeccCChhhhhc
Q 043239          148 GKRVGIVGL-GSIGSEVAKRLVPFGC---SIAYTSRKKKPGV-------SYPFYANVSGLAADSDVLIVCCALTEETHHM  216 (286)
Q Consensus       148 g~~vgIiG~-G~iG~~~A~~l~~~g~---~V~~~~r~~~~~~-------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~  216 (286)
                      |-+|||+|. |-.|+++.+.|....+   ++.+...+...-.       ........++...++|++++++|...+ ...
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s-~~~   79 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTS-AKY   79 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHH-HHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccch-hhH
Confidence            458999996 9999999999987754   3444432211111       011123344567789999999884322 222


Q ss_pred             ccHHHHhcCCCCcEEEEcCCC
Q 043239          217 INKDVMTALGKEGVIINVGRG  237 (286)
Q Consensus       217 i~~~~l~~mk~g~ilvn~srg  237 (286)
                          .....+.|..+||.|..
T Consensus        80 ----~~~~~~~~~~VIDlSsd   96 (154)
T d2gz1a1          80 ----APYAVKAGVVVVDNTSY   96 (154)
T ss_dssp             ----HHHHHHTTCEEEECSST
T ss_pred             ----HhhhccccceehhcChh
Confidence                22334679999999843

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.19  E-value=0.0059  Score=45.18  Aligned_cols=38  Identities=18%  Similarity=0.240  Sum_probs=34.4

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV  185 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~  185 (286)
                      .+++.|||.|.+|-++|..+..+|.+|++..|++....
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~   62 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP   62 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCc
Confidence            47999999999999999999999999999998876654

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=95.18  E-value=0.0044  Score=46.11  Aligned_cols=82  Identities=13%  Similarity=0.082  Sum_probs=49.3

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc----c---cCHHHh-hcCCCEEEEeccCChhhhh
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF----Y---ANVSGL-AADSDVLIVCCALTEETHH  215 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~----~---~~l~e~-l~~aDiV~~~lp~~~~t~~  215 (286)
                      |.+.|+|+|.+|+.+++.|++.  +|.+.+.+++...     +...    .   ..|.++ +.+|+.++++.+....+. 
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~--~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~-   77 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGS--EVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETI-   77 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGG--GEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHH-
T ss_pred             CEEEEECCCHHHHHHHHHHcCC--CCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhH-
Confidence            4688999999999999999765  4566666554321     1111    1   223332 678999998877544333 


Q ss_pred             cccHHHHhcCCCCc-EEEEc
Q 043239          216 MINKDVMTALGKEG-VIINV  234 (286)
Q Consensus       216 ~i~~~~l~~mk~g~-ilvn~  234 (286)
                       .-......+.|.. +++-+
T Consensus        78 -~~~~~~r~~~~~~~iia~~   96 (129)
T d2fy8a1          78 -HCILGIRKIDESVRIIAEA   96 (129)
T ss_dssp             -HHHHHHHHHCSSSCEEEEC
T ss_pred             -HHHHHHHHHCCCceEEEEE
Confidence             2233444555553 44443

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.15  E-value=0.0065  Score=44.96  Aligned_cols=32  Identities=22%  Similarity=0.269  Sum_probs=29.5

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRK  180 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~  180 (286)
                      +++.|||.|.||.++|..|+.+|.+|+++.++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            58999999999999999999999999888764

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.14  E-value=0.0061  Score=43.31  Aligned_cols=35  Identities=23%  Similarity=0.387  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCChHH-HHHHHHhccCCCEEEEECCCC
Q 043239          147 GGKRVGIVGLGSIG-SEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       147 ~g~~vgIiG~G~iG-~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      +.+++-+||.|.+| .++|+.|+..|++|.++|+..
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            56799999999999 556999999999999999864

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=95.12  E-value=0.038  Score=43.53  Aligned_cols=91  Identities=9%  Similarity=0.040  Sum_probs=64.3

Q ss_pred             cCCCCEEEEEcCC--hHHHHHHHHhccCCCEEEEECCCCCCCC----------------CcccccCHHHhhcCCCEEEEe
Q 043239          145 TLGGKRVGIVGLG--SIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------SYPFYANVSGLAADSDVLIVC  206 (286)
Q Consensus       145 ~l~g~~vgIiG~G--~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~~~~~~~l~e~l~~aDiV~~~  206 (286)
                      .+.|.+|+++|=|  ++..+++..+..+|+++.+..+..-...                ......+++++++++|+|.+-
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~   81 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD   81 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEE
Confidence            5778999999955  7999999999999999998887543221                122357899999999999774


Q ss_pred             ccCC----hh----------hhhcccHHHHhcCCCCcEEEEcC
Q 043239          207 CALT----EE----------THHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       207 lp~~----~~----------t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      .=..    ..          ....+++......++.++|.-+.
T Consensus        82 ~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~L  124 (183)
T d1duvg2          82 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL  124 (183)
T ss_dssp             CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             ehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccC
Confidence            3211    10          11233444556678999999885

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.10  E-value=0.0024  Score=50.04  Aligned_cols=88  Identities=22%  Similarity=0.228  Sum_probs=59.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-----Ccc-c---c-cCHHHhh-----cCCCEEEEeccCC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-----SYP-F---Y-ANVSGLA-----ADSDVLIVCCALT  210 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-----~~~-~---~-~~l~e~l-----~~aDiV~~~lp~~  210 (286)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.++++++..     +.. .   . .+.++..     ...|+|+.++...
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~  111 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQ  111 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcc
Confidence            47799999999999999999998887 6777887765321     111 1   1 1222222     2378888887632


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 043239          211 EETHHMINKDVMTALGKEGVIINVGRGAL  239 (286)
Q Consensus       211 ~~t~~~i~~~~l~~mk~g~ilvn~srg~~  239 (286)
                       .+   + ...++.++++..++.++-++-
T Consensus       112 -~~---~-~~a~~~l~~~G~iv~~G~~~~  135 (172)
T d1h2ba2         112 -AT---V-DYTPYLLGRMGRLIIVGYGGE  135 (172)
T ss_dssp             -HH---H-HHGGGGEEEEEEEEECCCSSC
T ss_pred             -hH---H-HHHHHHHhCCCEEEEEeCccc
Confidence             21   1 345777899999998876543

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.019  Score=46.71  Aligned_cols=64  Identities=20%  Similarity=0.279  Sum_probs=48.1

Q ss_pred             CCCCEEEEEc-CChHHHHHHHHhccCCC--EEEEECCCCCCCCC------------cccccCHHHhhcCCCEEEEeccC
Q 043239          146 LGGKRVGIVG-LGSIGSEVAKRLVPFGC--SIAYTSRKKKPGVS------------YPFYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       146 l~g~~vgIiG-~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~~------------~~~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      ..+++|.|.| .|.+|+.+++.|.+.|.  +|++.+|++.....            .....++.+.++.+|+++.++..
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~   90 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT   90 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccccccccccccccccccccccc
Confidence            4678999997 79999999999987774  89998886654321            11234566778999999887653

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.014  Score=48.23  Aligned_cols=38  Identities=29%  Similarity=0.438  Sum_probs=33.7

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+|+.+
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~   42 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQA   42 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            589999999985 56999999999999999999998743

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.06  E-value=0.047  Score=43.60  Aligned_cols=97  Identities=14%  Similarity=0.204  Sum_probs=69.8

Q ss_pred             HHHHHhccCCCEEEEECCCCCCC---------CCcccccCHHHhhcCCCEEEEe-ccCChhhhhcccHHHHhcCCCCcEE
Q 043239          162 EVAKRLVPFGCSIAYTSRKKKPG---------VSYPFYANVSGLAADSDVLIVC-CALTEETHHMINKDVMTALGKEGVI  231 (286)
Q Consensus       162 ~~A~~l~~~g~~V~~~~r~~~~~---------~~~~~~~~l~e~l~~aDiV~~~-lp~~~~t~~~i~~~~l~~mk~g~il  231 (286)
                      ..++.|.+.|++|.+=.--....         .++....+.++++.++|+|+.. .|...+    ...+.++.||+|+++
T Consensus        21 ~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e----~~~~ei~~lk~g~~l   96 (194)
T d1l7da2          21 EVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAE----EGTDEVALIKEGAVL   96 (194)
T ss_dssp             HHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGG----GSCCGGGGSCTTCEE
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCcccc----cchhHhhhccCceEE
Confidence            67888999999998743322211         1344456778999999988654 343221    233567889999999


Q ss_pred             EEcCCCcccCHHHHHHHHHhCCeeEEEeeccCC
Q 043239          232 INVGRGALIDEKELVHFLVRGSLVELVLMCLRT  264 (286)
Q Consensus       232 vn~srg~~vd~~al~~al~~~~i~ga~lDv~~~  264 (286)
                      |..-  ......++.++|.+.++...++|....
T Consensus        97 i~~l--~p~~~~~~~~~l~~~~it~~a~e~ipR  127 (194)
T d1l7da2          97 MCHL--GALTNRPVVEALTKRKITAYAMELMPR  127 (194)
T ss_dssp             EEEC--CGGGCHHHHHHHHHTTCEEEEGGGCCC
T ss_pred             EEec--ccccchhHHHHHHhcCceEEeeecccc
Confidence            9764  456778899999999999999988853

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.05  E-value=0.036  Score=39.92  Aligned_cols=59  Identities=14%  Similarity=0.070  Sum_probs=46.5

Q ss_pred             CCEEEEEcCC----------hHHHHHHHHhccCCCEEEEECCCCCCCC---CcccccCHHHhhcCCCEEEEe
Q 043239          148 GKRVGIVGLG----------SIGSEVAKRLVPFGCSIAYTSRKKKPGV---SYPFYANVSGLAADSDVLIVC  206 (286)
Q Consensus       148 g~~vgIiG~G----------~iG~~~A~~l~~~g~~V~~~~r~~~~~~---~~~~~~~l~e~l~~aDiV~~~  206 (286)
                      .++|||+|+-          .-.-.+.+.|...|.+|.+||+......   ......++++++..||+|++.
T Consensus        15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~~~~~~~~~~l~~~~~~sDiII~~   86 (108)
T d1dlja3          15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVTN   86 (108)
T ss_dssp             SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEECS
T ss_pred             CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHhccCCEEEeCHHHHHhhCCEEEEc
Confidence            3589999973          5778899999999999999999776543   233457999999999977654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.03  E-value=0.011  Score=45.20  Aligned_cols=36  Identities=22%  Similarity=0.334  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCC--CEEEEECCCCC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFG--CSIAYTSRKKK  182 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g--~~V~~~~r~~~  182 (286)
                      +||+|.|||.|..|-++|..|+..+  .+|+++++.+.
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            5899999999999999999999877  47888887653

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=94.99  E-value=0.02  Score=44.77  Aligned_cols=101  Identities=14%  Similarity=0.068  Sum_probs=62.6

Q ss_pred             CCEEEEEcCChHHHHHH--HHhc---cC-CCEEEEECCCCCCCC-------------C----cccccCHHHhhcCCCEEE
Q 043239          148 GKRVGIVGLGSIGSEVA--KRLV---PF-GCSIAYTSRKKKPGV-------------S----YPFYANVSGLAADSDVLI  204 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A--~~l~---~~-g~~V~~~~r~~~~~~-------------~----~~~~~~l~e~l~~aDiV~  204 (286)
                      ..+|.|||.|..|...+  ..+.   .+ +-++..+|..+++..             +    .....+..|.+++||+|+
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv   82 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM   82 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence            45899999999876532  2232   22 237999998775432             1    123468889999999999


Q ss_pred             EeccCChhh-------------------------------hhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 043239          205 VCCALTEET-------------------------------HHMIN--KDVMTALGKEGVIINVGRGALIDEKELVHF  248 (286)
Q Consensus       205 ~~lp~~~~t-------------------------------~~~i~--~~~l~~mk~g~ilvn~srg~~vd~~al~~a  248 (286)
                      ++.-.....                               ..++.  .+.+....|+++++|++..--+-..++.+.
T Consensus        83 itag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TNPvdv~t~~~~k~  159 (167)
T d1u8xx1          83 AHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRL  159 (167)
T ss_dssp             ECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHH
T ss_pred             ECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHHHH
Confidence            986432110                               00110  112233478999999988766666666654

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=94.98  E-value=0.0059  Score=51.10  Aligned_cols=38  Identities=29%  Similarity=0.438  Sum_probs=34.0

Q ss_pred             cCCCCEEEEEcCC-hHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVGLG-SIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG~G-~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      +|+||++.|.|.+ .||+++|+.|.+.|++|+..+|+.+
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDE   40 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5899999999865 5999999999999999999998754

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.98  E-value=0.013  Score=48.42  Aligned_cols=38  Identities=24%  Similarity=0.407  Sum_probs=33.5

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      +|+||++.|.|. +.||+++|+.|...|++|.+.+|+.+
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNS   40 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            488999999986 56999999999999999999988643

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.97  E-value=0.019  Score=42.88  Aligned_cols=85  Identities=16%  Similarity=0.193  Sum_probs=49.1

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccCCCEEE-EECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCC
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPFGCSIA-YTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALG  226 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~g~~V~-~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk  226 (286)
                      ++|+|+|+ |+||+.+++.+...|+++. .++++.            .+.+..+|+|+=... .+.+...+.. .   ++
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~------------~~~~~~~DVvIDFS~-p~~~~~~l~~-~---~~   63 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG------------VEELDSPDVVIDFSS-PEALPKTVDL-C---KK   63 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE------------EEECSCCSEEEECSC-GGGHHHHHHH-H---HH
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCc------------HHHhccCCEEEEecC-HHHHHHHHHH-H---Hh
Confidence            58999996 9999999999999899865 344321            223456887764421 1223322211 1   23


Q ss_pred             CCcEEEEcCCCcccCHHHHHHHHH
Q 043239          227 KEGVIINVGRGALIDEKELVHFLV  250 (286)
Q Consensus       227 ~g~ilvn~srg~~vd~~al~~al~  250 (286)
                      .+.-+|--.+|---+....++.+.
T Consensus        64 ~~~p~ViGTTG~~~~~~~~i~~~a   87 (128)
T d1vm6a3          64 YRAGLVLGTTALKEEHLQMLRELS   87 (128)
T ss_dssp             HTCEEEECCCSCCHHHHHHHHHHT
T ss_pred             cCCCEEEEcCCCCHHHHHHHHHHH
Confidence            344455555664444445555543

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.96  E-value=0.042  Score=46.79  Aligned_cols=90  Identities=12%  Similarity=0.169  Sum_probs=53.6

Q ss_pred             cCCCCEEEEEcCC-hHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHH----hhcCCCEEEEeccCChhhhhcccH
Q 043239          145 TLGGKRVGIVGLG-SIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSG----LAADSDVLIVCCALTEETHHMINK  219 (286)
Q Consensus       145 ~l~g~~vgIiG~G-~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e----~l~~aDiV~~~lp~~~~t~~~i~~  219 (286)
                      +|+||++.|-|.+ .||+++|+.|...|++|++.+++.+..........+++    +-...-.+...+-..++...++. 
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~-   82 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVK-   82 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHH-
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHH-
Confidence            5889999999864 59999999999999999999987654432221112222    22233333333333334444443 


Q ss_pred             HHHhcCCCCcEEEEcC
Q 043239          220 DVMTALGKEGVIINVG  235 (286)
Q Consensus       220 ~~l~~mk~g~ilvn~s  235 (286)
                      ...+.+.+=-++||.+
T Consensus        83 ~~~~~~G~iDiLVnNA   98 (302)
T d1gz6a_          83 TALDTFGRIDVVVNNA   98 (302)
T ss_dssp             HHHHHTSCCCEEEECC
T ss_pred             HHHHHcCCCCEEEECC
Confidence            3444444434666653

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.95  E-value=0.0087  Score=49.48  Aligned_cols=38  Identities=29%  Similarity=0.463  Sum_probs=33.5

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKK  181 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~  181 (286)
                      .+|++++|.|+|+|.+|..+|+.|...|. ++..+|...
T Consensus        26 ~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          26 EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            35899999999999999999999999998 788888543

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.0026  Score=49.88  Aligned_cols=87  Identities=20%  Similarity=0.195  Sum_probs=59.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc-----ccCHHHhh------cCCCEEEEeccC
Q 043239          147 GGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF-----YANVSGLA------ADSDVLIVCCAL  209 (286)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~-----~~~l~e~l------~~aDiV~~~lp~  209 (286)
                      .|.+|.|.|. |.+|....+.++.+|++|++..+++++..     ++..     -.++.+.+      ...|+|+-++. 
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g-  106 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLA-  106 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCH-
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeeccc-
Confidence            5789999995 99999999999999999988877654321     2211     12333322      23788877653 


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 043239          210 TEETHHMINKDVMTALGKEGVIINVGRGAL  239 (286)
Q Consensus       210 ~~~t~~~i~~~~l~~mk~g~ilvn~srg~~  239 (286)
                       ..   . -...++.|+++..+|.++..+.
T Consensus       107 -~~---~-~~~~~~~l~~~G~iv~~G~~~~  131 (174)
T d1yb5a2         107 -NV---N-LSKDLSLLSHGGRVIVVGSRGT  131 (174)
T ss_dssp             -HH---H-HHHHHHHEEEEEEEEECCCCSC
T ss_pred             -HH---H-HHHHHhccCCCCEEEEEecCCC
Confidence             11   1 2456788999999999975544

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=94.88  E-value=0.012  Score=47.56  Aligned_cols=35  Identities=34%  Similarity=0.389  Sum_probs=31.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      ..++|.|||.|.+|.+.|..|+..|++|+++++..
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            34689999999999999999999999999999753

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.012  Score=52.93  Aligned_cols=79  Identities=16%  Similarity=0.178  Sum_probs=55.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCC------C-------C-----------------cc------
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPG------V-------S-----------------YP------  188 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~------~-------~-----------------~~------  188 (286)
                      |.+++|.|||+|.+|..+++.|...|. ++.++|...=..      .       +                 ..      
T Consensus        35 l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~  114 (426)
T d1yovb1          35 LDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFN  114 (426)
T ss_dssp             HHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECS
T ss_pred             HhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeec
Confidence            678899999999999999999999998 688887532110      0       0                 00      


Q ss_pred             -cccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcC
Q 043239          189 -FYANVSGLAADSDVLIVCCALTEETHHMINKDVMTAL  225 (286)
Q Consensus       189 -~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~m  225 (286)
                       .....++.++++|+|+.++- +.+++..+++..+...
T Consensus       115 ~i~~~~~~~~~~~DlVi~~~D-n~~aR~~in~~c~~l~  151 (426)
T d1yovb1         115 KIQDFNDTFYRQFHIIVCGLD-SIIARRWINGMLISLL  151 (426)
T ss_dssp             CGGGBCHHHHTTCSEEEECCS-CHHHHHHHHHHHHHTC
T ss_pred             cccchHHHHHHhcchheeccC-cHHHHHHHHHHHHHhh
Confidence             01122467889999887764 5677777777655443

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.86  E-value=0.015  Score=41.76  Aligned_cols=40  Identities=23%  Similarity=0.244  Sum_probs=32.4

Q ss_pred             CcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCC
Q 043239          142 LGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       142 ~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      ...+.+||+|+|||.|.-|..+|.-|....-++++..++.
T Consensus        26 ~~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          26 EPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             CGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             chhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            3457899999999999999999999998777765544433

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.84  E-value=0.012  Score=43.76  Aligned_cols=38  Identities=18%  Similarity=0.195  Sum_probs=33.9

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV  185 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~  185 (286)
                      .+++.|||.|.||-++|..++.+|.+|+.+.++..-..
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~   63 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ   63 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccc
Confidence            47999999999999999999999999999998765543

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.81  E-value=0.016  Score=42.49  Aligned_cols=36  Identities=28%  Similarity=0.289  Sum_probs=32.3

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      ++++.|||.|.+|-++|..|+.+|.+|+++.+.+.-
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l   67 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF   67 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEeccccc
Confidence            368999999999999999999999999999886543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.80  E-value=0.0039  Score=52.27  Aligned_cols=39  Identities=31%  Similarity=0.437  Sum_probs=34.3

Q ss_pred             ccCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          144 STLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       144 ~~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      ++|+||++.|.|. +.||+++|+.|...|++|...+|+.+
T Consensus         1 krL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (260)
T d1zema1           1 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNRE   40 (260)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4689999999986 45999999999999999999998653

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.80  E-value=0.016  Score=47.27  Aligned_cols=37  Identities=24%  Similarity=0.313  Sum_probs=33.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      ..++|.|||.|..|..+|..|+..|++|+++++++..
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~   39 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQP   39 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            3569999999999999999999999999999987653

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.77  E-value=0.018  Score=43.08  Aligned_cols=39  Identities=21%  Similarity=0.256  Sum_probs=34.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV  185 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~  185 (286)
                      .++++.|||.|.+|-++|..|+..|.+|+++.+......
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~   72 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLE   72 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccc
Confidence            367999999999999999999999999999998776543

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.74  E-value=0.013  Score=42.53  Aligned_cols=38  Identities=18%  Similarity=0.276  Sum_probs=33.8

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV  185 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~  185 (286)
                      .+++.|||.|.+|-++|..|+.+|.+|+++.+.+.-..
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~   58 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP   58 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccccc
Confidence            47999999999999999999999999999988765543

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=94.69  E-value=0.036  Score=45.49  Aligned_cols=37  Identities=27%  Similarity=0.416  Sum_probs=32.4

Q ss_pred             CCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCC
Q 043239          148 GKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPG  184 (286)
Q Consensus       148 g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~  184 (286)
                      .++|.|.|. |.+|+.+++.|...|++|.+.+|.....
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~   40 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTAS   40 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccc
Confidence            478999995 9999999999999999999999876543

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.66  E-value=0.024  Score=46.60  Aligned_cols=57  Identities=23%  Similarity=0.322  Sum_probs=42.9

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhc--CCCEEEEecc
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAA--DSDVLIVCCA  208 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~--~aDiV~~~lp  208 (286)
                      |+|.|.|. |-||+.+++.|...|++|++.+|+.-.   .....+++++++  ..|+|+-+.-
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D---~~d~~~~~~~l~~~~~d~vih~a~   61 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLD---ITNVLAVNKFFNEKKPNVVINCAA   61 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCC---TTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhcc---CCCHHHHHHHHHHcCCCEEEeecc
Confidence            68999996 999999999999999999999986432   222345566665  4588766543

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=94.60  E-value=0.0063  Score=50.36  Aligned_cols=38  Identities=26%  Similarity=0.430  Sum_probs=33.8

Q ss_pred             cCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      .|+||++.|.|.+. ||.++|+.|...|++|+..+|+.+
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREER   40 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            48999999998765 999999999999999999988754

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.53  E-value=0.012  Score=48.74  Aligned_cols=38  Identities=26%  Similarity=0.478  Sum_probs=33.4

Q ss_pred             ccCCCCEEEEEcCC---hHHHHHHHHhccCCCEEEEECCCC
Q 043239          144 STLGGKRVGIVGLG---SIGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       144 ~~l~g~~vgIiG~G---~iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      .+|+||++.|.|.+   .||+++|++|...|++|.+.+|+.
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~   44 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence            46899999999975   499999999999999998887763

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=94.49  E-value=0.012  Score=48.92  Aligned_cols=36  Identities=28%  Similarity=0.313  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      ..++|.|||.|..|...|..|+..|++|++++++..
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~   64 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER   64 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            456999999999999999999999999999997653

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.42  E-value=0.01  Score=49.23  Aligned_cols=38  Identities=18%  Similarity=0.310  Sum_probs=33.9

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      .|+||++.|-|. +.||+++|+.|...|++|++.+|+.+
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~   41 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDE   41 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            589999999986 56999999999999999999998753

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=94.35  E-value=0.015  Score=48.17  Aligned_cols=38  Identities=29%  Similarity=0.311  Sum_probs=33.6

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      +|+||++.|.|. +.||+++|+.|...|++|.+.+|+..
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~   40 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA   40 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            589999999986 46999999999999999999988653

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.34  E-value=0.041  Score=42.84  Aligned_cols=39  Identities=21%  Similarity=0.243  Sum_probs=34.3

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCC
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPG  184 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~  184 (286)
                      -.|.+|.|+|.|.+|...++.++..|. +|++.+++.++.
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl   65 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKF   65 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHH
Confidence            357899999999999999999999997 788999887653

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.32  E-value=0.037  Score=47.57  Aligned_cols=61  Identities=21%  Similarity=0.257  Sum_probs=44.5

Q ss_pred             CCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCCC------------cccccCHHHhhcCCCEEEEec
Q 043239          147 GGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS------------YPFYANVSGLAADSDVLIVCC  207 (286)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~------------~~~~~~l~e~l~~aDiV~~~l  207 (286)
                      .+|+|.|.| .|-||+.+++.|...|++|++.++.......            ......+.++++.+|.|+-+.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a   87 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA   87 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence            788999997 8999999999999999999999765443210            011223445677899886654

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=94.31  E-value=0.015  Score=47.34  Aligned_cols=34  Identities=26%  Similarity=0.317  Sum_probs=31.1

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      ++|.|||.|..|...|..|+..|++|+++.++..
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~   34 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR   34 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            5799999999999999999999999999987643

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=94.31  E-value=0.0074  Score=50.50  Aligned_cols=38  Identities=29%  Similarity=0.427  Sum_probs=33.7

Q ss_pred             cCCCCEEEEEcCC-hHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVGLG-SIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG~G-~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      +|+||++.|-|.+ .||+++|+.|...|++|++.+|+.+
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   43 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQK   43 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5899999999875 5999999999999999999998654

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.25  E-value=0.021  Score=48.96  Aligned_cols=36  Identities=22%  Similarity=0.417  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      +.|+|.|||.|..|..+|..|+..|++|++++++..
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            368999999999999999999999999999987654

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.25  E-value=0.03  Score=46.10  Aligned_cols=38  Identities=21%  Similarity=0.222  Sum_probs=33.5

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      .|+||++.|-|. +.||+++|+.|...|++|+..+|+.+
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEG   40 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            478999999986 55999999999999999999998753

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=94.14  E-value=0.02  Score=49.10  Aligned_cols=63  Identities=13%  Similarity=0.194  Sum_probs=45.5

Q ss_pred             CCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC--------Ccc-----c---ccCHHHhhcCCCEEEEeccC
Q 043239          147 GGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV--------SYP-----F---YANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------~~~-----~---~~~l~e~l~~aDiV~~~lp~  209 (286)
                      +.|+|.|+| .|.+|+.+++.|.+.|++|.+..|+.....        ++.     .   ...++.++..+|.++...+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~   81 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   81 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeeccc
Confidence            467999999 699999999999999999999888665421        111     0   11245577788887776553

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=94.12  E-value=0.029  Score=47.93  Aligned_cols=38  Identities=26%  Similarity=0.281  Sum_probs=34.1

Q ss_pred             CCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCC
Q 043239          146 LGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       146 l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      .+||+|.|.| .|-||+.+++.|...|++|.+++|+...
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~   44 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT   44 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            4689999998 7899999999999999999999987654

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.10  E-value=0.0079  Score=50.46  Aligned_cols=39  Identities=36%  Similarity=0.567  Sum_probs=34.5

Q ss_pred             cCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCC
Q 043239          145 TLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       145 ~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      .|+||++.|.|.+. ||+++|+.|.+.|++|+..+|+.+.
T Consensus        11 ~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~   50 (269)
T d1xu9a_          11 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKET   50 (269)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            39999999998755 9999999999999999999987543

>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.09  E-value=0.072  Score=42.45  Aligned_cols=94  Identities=11%  Similarity=0.102  Sum_probs=66.2

Q ss_pred             HHHHHhccCCCEEEEECCCCCCCC---------CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEE
Q 043239          162 EVAKRLVPFGCSIAYTSRKKKPGV---------SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVII  232 (286)
Q Consensus       162 ~~A~~l~~~g~~V~~~~r~~~~~~---------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilv  232 (286)
                      ..+++|.+.|++|++=.--.....         ++....+.+++. ++|+|+..-|.+        .+.+++||+|+++|
T Consensus        21 ~~vkkl~~~G~~V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~-~~diilkv~~p~--------~~e~~~lk~~~~li   91 (193)
T d1pjca2          21 SSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKVKEPL--------PAEYDLMQKDQLLF   91 (193)
T ss_dssp             HHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECSSCCC--------GGGGGGCCTTCEEE
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHhhcceeeecccccc-ccceEEEeccCC--------HHHHHhhhcCceEE
Confidence            677888889999987543222211         333445666766 589886554433        23578899999999


Q ss_pred             EcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCC
Q 043239          233 NVGRGALIDEKELVHFLVRGSLVELVLMCLRTSL  266 (286)
Q Consensus       233 n~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~  266 (286)
                      -.-.  +.....++++|.++++...+++......
T Consensus        92 ~~l~--p~~~~ell~~l~~~~it~~s~E~ipr~s  123 (193)
T d1pjca2          92 TYLH--LAAARELTEQLMRVGLTAIAYETVELPN  123 (193)
T ss_dssp             ECCC--GGGCHHHHHHHHHHTCEEEEGGGCCCTT
T ss_pred             EecC--cccchHHHHHHHHcCCEEEEeeeccccC
Confidence            7644  4556789999999999999999886654

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=94.00  E-value=0.014  Score=48.34  Aligned_cols=38  Identities=24%  Similarity=0.368  Sum_probs=33.1

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      +|+||++.|-|. +.||+++|++|...|++|+..+|+.+
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~   39 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSEN   39 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            478999999884 56999999999999999999998753

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=93.98  E-value=0.019  Score=48.40  Aligned_cols=40  Identities=25%  Similarity=0.330  Sum_probs=36.0

Q ss_pred             ccCCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCC
Q 043239          144 STLGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       144 ~~l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      .+|+||++.|-| .|.||+++|+.|...|++|++.+|+.++
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~   61 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDV   61 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence            579999999998 6889999999999999999999987543

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=93.92  E-value=0.024  Score=46.67  Aligned_cols=38  Identities=32%  Similarity=0.510  Sum_probs=33.3

Q ss_pred             cCCCCEEEEEcCCh---HHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVGLGS---IGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG~G~---iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      .|+||++.|.|.+.   ||.++|+.|...|++|+..+|+.+
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            38999999999764   999999999999999998888743

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=93.88  E-value=0.019  Score=47.79  Aligned_cols=39  Identities=23%  Similarity=0.328  Sum_probs=33.8

Q ss_pred             cCCCCEEEEEcCC-hHHHHHHHHhccCCCEEEEECCCCCC
Q 043239          145 TLGGKRVGIVGLG-SIGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       145 ~l~g~~vgIiG~G-~iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      +|+||++.|-|.+ .||+++|+.|...|++|.+.+|+.+.
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   40 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEG   40 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            3789999999865 59999999999999999999987543

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.81  E-value=0.032  Score=45.21  Aligned_cols=40  Identities=35%  Similarity=0.411  Sum_probs=35.5

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      +.-.+++|.|||.|..|...|..|+..|++|++++++.+.
T Consensus        45 ~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~   84 (233)
T d1djqa3          45 QTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI   84 (233)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             cccCCceEEEEcccHHHHHHHHHHHHhccceeeEeecccc
Confidence            3457899999999999999999999999999999876643

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.80  E-value=0.0076  Score=50.45  Aligned_cols=39  Identities=26%  Similarity=0.397  Sum_probs=34.0

Q ss_pred             cCCCCEEEEEcCC-hHHHHHHHHhccCCCEEEEECCCCCC
Q 043239          145 TLGGKRVGIVGLG-SIGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       145 ~l~g~~vgIiG~G-~iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      +|+||++.|.|.+ .||+++|+.|...|++|...+|+.++
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~   44 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYE   44 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            5899999999865 59999999999999999999987543

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.80  E-value=0.042  Score=38.22  Aligned_cols=35  Identities=23%  Similarity=0.337  Sum_probs=31.2

Q ss_pred             CCEEEEEcCChHHH-HHHHHhccCCCEEEEECCCCC
Q 043239          148 GKRVGIVGLGSIGS-EVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       148 g~~vgIiG~G~iG~-~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      +++|=+||.|-+|. ++|+.|+..|+.|.+.|+...
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~   36 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEET   36 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            46899999999998 689999999999999998753

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=93.79  E-value=0.022  Score=47.30  Aligned_cols=40  Identities=18%  Similarity=0.254  Sum_probs=35.4

Q ss_pred             ccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCC
Q 043239          144 STLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      .+++||++.|-|.+. ||.++|+.|...|++|++.+|+.++
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   45 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAAD   45 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTT
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            468999999998655 9999999999999999999988764

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=93.78  E-value=0.016  Score=47.65  Aligned_cols=65  Identities=18%  Similarity=0.188  Sum_probs=43.2

Q ss_pred             CCCCEEEEEcCChHH----HHHHHHhccC--CCEEE-EECCCCCCCC---------CcccccCHHHhhcC--CCEEEEec
Q 043239          146 LGGKRVGIVGLGSIG----SEVAKRLVPF--GCSIA-YTSRKKKPGV---------SYPFYANVSGLAAD--SDVLIVCC  207 (286)
Q Consensus       146 l~g~~vgIiG~G~iG----~~~A~~l~~~--g~~V~-~~~r~~~~~~---------~~~~~~~l~e~l~~--aDiV~~~l  207 (286)
                      -+-.+|||||+|.+|    +.....++..  +++|+ +++++.+...         ....+.++++++++  -|+|++++
T Consensus        14 ~k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~t   93 (237)
T d2nvwa1          14 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSV   93 (237)
T ss_dssp             GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECS
T ss_pred             CCCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccC
Confidence            445699999999754    4444455543  56876 6788764321         22346799999864  67899998


Q ss_pred             cCC
Q 043239          208 ALT  210 (286)
Q Consensus       208 p~~  210 (286)
                      |..
T Consensus        94 p~~   96 (237)
T d2nvwa1          94 KVP   96 (237)
T ss_dssp             CHH
T ss_pred             CCc
Confidence            843

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.75  E-value=0.013  Score=46.47  Aligned_cols=60  Identities=17%  Similarity=0.086  Sum_probs=42.3

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCCCE--EEEECCCCCCCC----C-------cccccCHHHhhcCCCEEEEecc
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFGCS--IAYTSRKKKPGV----S-------YPFYANVSGLAADSDVLIVCCA  208 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g~~--V~~~~r~~~~~~----~-------~~~~~~l~e~l~~aDiV~~~lp  208 (286)
                      +||.|.| .|.||+.+++.|...|++  |....|+++...    .       .....++.++++.+|.|+.+..
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~   77 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTS   77 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEe
Confidence            5899998 799999999999988875  555566543211    1       1123455678899999887653

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.71  E-value=0.0066  Score=47.56  Aligned_cols=84  Identities=20%  Similarity=0.207  Sum_probs=56.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCC-----CCcc-----cccCHHHhh------cCCCEEEEeccC
Q 043239          147 GGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYP-----FYANVSGLA------ADSDVLIVCCAL  209 (286)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~~~~-----~~~~l~e~l------~~aDiV~~~lp~  209 (286)
                      .|.+|.|.|. |.+|...++.++.+|++|++..++.++.     .++.     ...++.+-+      ...|+|+-++..
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g~  104 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAG  104 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCT
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEecccc
Confidence            4789999885 9999999999999999998877655421     1211     112333322      347888877652


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 043239          210 TEETHHMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       210 ~~~t~~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                       +.     .+..++.++++..+|.++.
T Consensus       105 -~~-----~~~~~~~l~~~G~~v~~G~  125 (183)
T d1pqwa_         105 -EA-----IQRGVQILAPGGRFIELGK  125 (183)
T ss_dssp             -HH-----HHHHHHTEEEEEEEEECSC
T ss_pred             -hH-----HHHHHHHhcCCCEEEEEcc
Confidence             11     1356677888888888864

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.69  E-value=0.04  Score=45.67  Aligned_cols=40  Identities=25%  Similarity=0.317  Sum_probs=34.9

Q ss_pred             cccCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          143 GSTLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       143 ~~~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      +..++||++.|.|. +.||.++|+.|...|++|++.+|+.+
T Consensus         5 M~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~   45 (257)
T d1xg5a_           5 MERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVG   45 (257)
T ss_dssp             CGGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            45699999999985 67999999999999999999988643

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=93.69  E-value=0.057  Score=46.51  Aligned_cols=33  Identities=30%  Similarity=0.311  Sum_probs=27.9

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCCCEEEEECCCC
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      |++.|.| .|-||+.+++.|...|++|++.+|..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            4566777 89999999999999999999999853

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=93.66  E-value=0.079  Score=43.72  Aligned_cols=62  Identities=15%  Similarity=0.126  Sum_probs=41.8

Q ss_pred             cCCCCEEEEEcCC-hHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccC
Q 043239          145 TLGGKRVGIVGLG-SIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       145 ~l~g~~vgIiG~G-~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      +|+||++.|-|.+ .||.++|+.|.+.|++|++..|+.+...   ....+.+......+.+..+-.
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~---~~~~~~~~~~~~~~~~~~~d~   64 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPT---ALAELKAINPKVNITFHTYDV   64 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHH---HHHHHHHHCTTSEEEEEECCT
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHH---HHHHHHhhCCCCCEEEEEeec
Confidence            5899999999876 5999999999999999877766554321   112233334444555555443

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=93.58  E-value=0.0088  Score=50.11  Aligned_cols=39  Identities=28%  Similarity=0.369  Sum_probs=34.2

Q ss_pred             ccCCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          144 STLGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       144 ~~l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      ++|+||++.|.| .+.||+++|+.|...|++|.+.+|+.+
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~   42 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKE   42 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence            469999999998 477999999999999999999888753

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=93.57  E-value=0.09  Score=40.51  Aligned_cols=38  Identities=24%  Similarity=0.287  Sum_probs=33.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPG  184 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~  184 (286)
                      .|.+|.|+|.|.+|...+..++.+|. +|++.+++.++.
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~   66 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKF   66 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHH
Confidence            58899999999999999999999986 888999887653

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.48  E-value=0.0086  Score=49.97  Aligned_cols=38  Identities=29%  Similarity=0.411  Sum_probs=33.6

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      +|+||++.|-|. +.||+++|+.|...|++|++.+|+.+
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   46 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINAD   46 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            589999999986 56999999999999999999998654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.32  E-value=0.04  Score=45.17  Aligned_cols=35  Identities=26%  Similarity=0.441  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      +..+|.|||.|.-|-..|..|+..|++|+++..+.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            34579999999999999999999999999998754

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=93.07  E-value=0.034  Score=46.06  Aligned_cols=38  Identities=29%  Similarity=0.417  Sum_probs=33.4

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      +|+||++.|.|. +.||+++|+.|...|++|...+|+.+
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~   41 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEA   41 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999985 46999999999999999999998653

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.07  E-value=0.093  Score=40.23  Aligned_cols=79  Identities=18%  Similarity=0.163  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-----Ccc-------cccCHHHhh-----cCCCEEEEecc
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-----SYP-------FYANVSGLA-----ADSDVLIVCCA  208 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-----~~~-------~~~~l~e~l-----~~aDiV~~~lp  208 (286)
                      .|.+|.|.|.|.+|...++.++.+|. +|++.++++++.+     +..       ...+..+.+     ..+|+|+-++.
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~G  107 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG  107 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecCC
Confidence            57899999999999999999999997 5777777665532     211       112233322     34788888765


Q ss_pred             CChhhhhcccHHHHhcCCCCcE
Q 043239          209 LTEETHHMINKDVMTALGKEGV  230 (286)
Q Consensus       209 ~~~~t~~~i~~~~l~~mk~g~i  230 (286)
                      . +.+    .+..+..+++|..
T Consensus       108 ~-~~~----~~~~~~~~~~g~~  124 (176)
T d2fzwa2         108 N-VKV----MRAALEACHKGWG  124 (176)
T ss_dssp             C-HHH----HHHHHHTBCTTTC
T ss_pred             C-HHH----HHHHHHhhcCCce
Confidence            2 221    1345555666643

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=93.02  E-value=0.024  Score=47.57  Aligned_cols=38  Identities=26%  Similarity=0.428  Sum_probs=33.9

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      +|+||++.|-|. +.||+++|+.|.+.|++|...+|+.+
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   40 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAE   40 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999985 68999999999999999999998753

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.02  E-value=0.14  Score=37.63  Aligned_cols=59  Identities=12%  Similarity=0.059  Sum_probs=38.8

Q ss_pred             EEEEEcCChHHHHHHHHhc-cCCCEEEE-ECCCCCCCC----Ccc--cccCHHHhhc-CCCEEEEecc
Q 043239          150 RVGIVGLGSIGSEVAKRLV-PFGCSIAY-TSRKKKPGV----SYP--FYANVSGLAA-DSDVLIVCCA  208 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~-~~g~~V~~-~~r~~~~~~----~~~--~~~~l~e~l~-~aDiV~~~lp  208 (286)
                      +|.|+|+|.+|+.+++.+. ..|+++++ +|-.++...    +..  ....++++.+ ..++.+.++|
T Consensus         5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~Gi~V~~~~~l~~~~~~~i~iai~~i~   72 (126)
T d2dt5a2           5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVP   72 (126)
T ss_dssp             EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSC
T ss_pred             eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEECCEEEecHHHHHHHHhhcccEEEEeCC
Confidence            7999999999999999775 45778764 455444322    222  2345555543 3566777777

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=92.99  E-value=0.21  Score=41.29  Aligned_cols=81  Identities=17%  Similarity=0.249  Sum_probs=54.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcC
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTAL  225 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~m  225 (286)
                      ..|++|++||+-    +..+.++..|+++.++++++..-  ......-++++++||+|++.-  +.=..+-+ ...+++.
T Consensus       120 ~~g~kV~vIG~~----P~v~~l~~~~~~~~VlE~~p~~g--d~p~~~~~~lLp~aD~viiTG--sTlvN~Tl-~~LL~~~  190 (251)
T d2h1qa1         120 VKGKKVGVVGHF----PHLESLLEPICDLSILEWSPEEG--DYPLPASEFILPECDYVYITC--ASVVDKTL-PRLLELS  190 (251)
T ss_dssp             TTTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCTT--CEEGGGHHHHGGGCSEEEEET--HHHHHTCH-HHHHHHT
T ss_pred             cCCCEEEEEecc----hhHHHHHhcCCcEEEEeCCCCCC--CCCchHHHHhhhcCCEEEEEe--chhhcCCH-HHHHHhC
Confidence            579999999874    46666777789999999986532  222334678999999998862  11122222 3577777


Q ss_pred             CCCcEEEEcC
Q 043239          226 GKEGVIINVG  235 (286)
Q Consensus       226 k~g~ilvn~s  235 (286)
                      |+...+|=+|
T Consensus       191 ~~a~~vvl~G  200 (251)
T d2h1qa1         191 RNARRITLVG  200 (251)
T ss_dssp             TTSSEEEEES
T ss_pred             CcCCEEEEEC
Confidence            8776666554

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.98  E-value=0.21  Score=42.19  Aligned_cols=124  Identities=14%  Similarity=0.169  Sum_probs=80.4

Q ss_pred             hHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccC----CC-------EEE
Q 043239          107 GADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPF----GC-------SIA  175 (286)
Q Consensus       107 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~----g~-------~V~  175 (286)
                      +|=-+++.+++.+|-                    .+++|...+|.|.|.|.-|..+|+.+...    |.       +++
T Consensus         4 Ta~V~lAglinAlki--------------------~gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~   63 (294)
T d1pj3a1           4 TAAVALAGLLAAQKV--------------------ISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIW   63 (294)
T ss_dssp             HHHHHHHHHHHHHHH--------------------HCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEE
T ss_pred             HHHHHHHHHHHHHHH--------------------hCCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEE
Confidence            455677777777664                    24568889999999999999999987653    32       477


Q ss_pred             EECCCC----CC---CCCc----------ccccCHHHhhc--CCCEEEEeccCChhhhhcccHHHHh---cCCCCcEEEE
Q 043239          176 YTSRKK----KP---GVSY----------PFYANVSGLAA--DSDVLIVCCALTEETHHMINKDVMT---ALGKEGVIIN  233 (286)
Q Consensus       176 ~~~r~~----~~---~~~~----------~~~~~l~e~l~--~aDiV~~~lp~~~~t~~~i~~~~l~---~mk~g~ilvn  233 (286)
                      .+|+..    ..   ....          ....+|.|+++  ..|+++-+..    ..++++++.+.   .|.+.+++.=
T Consensus        64 lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i~~~kptvliG~S~----~~g~ft~evi~~Ma~~~~~PIIFa  139 (294)
T d1pj3a1          64 MFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTIIGVAG----AGRLFTPDVIRAMASINERPVIFA  139 (294)
T ss_dssp             EEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHHHHCCSEEEECCC----SSCCSCHHHHHHHHHHCSSCEEEE
T ss_pred             EEeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHHHhcCCceEEEecC----CCCcCCHHHHHHHHhcCCCcEEEE
Confidence            777532    11   1110          01247888875  6787766531    34577787775   4568899999


Q ss_pred             cCCCccc---CHHHHHHHHHhCCe
Q 043239          234 VGRGALI---DEKELVHFLVRGSL  254 (286)
Q Consensus       234 ~srg~~v---d~~al~~al~~~~i  254 (286)
                      +|....-   ..++.+++-+.+-+
T Consensus       140 LSNPt~~~e~~~~~a~~~t~grai  163 (294)
T d1pj3a1         140 LSNPTAQAECTAEEAYTLTEGRCL  163 (294)
T ss_dssp             CCSSGGGCSCCHHHHHHHTTTCCE
T ss_pred             ccCCCCcCCcCHHHHHhhccCceE
Confidence            9988543   34555555444333

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.96  E-value=0.013  Score=49.13  Aligned_cols=39  Identities=28%  Similarity=0.397  Sum_probs=34.4

Q ss_pred             cccCCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCC
Q 043239          143 GSTLGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       143 ~~~l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      ..+|+||++.|.| .+.||+++|+.|...|++|++.+++.
T Consensus        13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          13 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS   52 (272)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            4569999999998 78899999999999999998877654

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=92.95  E-value=0.17  Score=43.02  Aligned_cols=93  Identities=13%  Similarity=0.198  Sum_probs=65.5

Q ss_pred             CCCCEEEEEcC---ChHHHHHHHHhccCC-CEEEEECCCCCCCC------------CcccccCHHHhhcCCCEEEEeccC
Q 043239          146 LGGKRVGIVGL---GSIGSEVAKRLVPFG-CSIAYTSRKKKPGV------------SYPFYANVSGLAADSDVLIVCCAL  209 (286)
Q Consensus       146 l~g~~vgIiG~---G~iG~~~A~~l~~~g-~~V~~~~r~~~~~~------------~~~~~~~l~e~l~~aDiV~~~lp~  209 (286)
                      +.|++|+++|-   +++..+++..+..+| +++.+..+..-...            ......+++++++++|+|....--
T Consensus       152 l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~  231 (310)
T d1tuga1         152 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ  231 (310)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTTTCCEEEESCGGGTTTTCSEEEECCCC
T ss_pred             cccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhcccccccccceeeeeechhhhccCCceeeecccc
Confidence            78999999997   789999999999885 68888776432211            123457899999999998753211


Q ss_pred             Ch----h------hhhcccHHHHhcCCCCcEEEEcC-CCc
Q 043239          210 TE----E------THHMINKDVMTALGKEGVIINVG-RGA  238 (286)
Q Consensus       210 ~~----~------t~~~i~~~~l~~mk~g~ilvn~s-rg~  238 (286)
                      ..    .      ....++.+.+..++++++|.-+. ||.
T Consensus       232 ~e~~~~~~~~~~~~~~~v~~~~l~~a~~~~i~MHcLPRg~  271 (310)
T d1tuga1         232 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVD  271 (310)
T ss_dssp             GGGSCHHHHHTTTTSSCBCGGGGTTSCSSCEEECCSCCSS
T ss_pred             hhhhcccchhhhhhhhhhhHHHHhcCCCCcEEeeCCCCCC
Confidence            11    0      12346777888899999988764 554

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=92.87  E-value=0.039  Score=45.43  Aligned_cols=38  Identities=24%  Similarity=0.356  Sum_probs=33.0

Q ss_pred             cCCCCEEEEEcC-Ch--HHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVGL-GS--IGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~--iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      .|+||++.|.|. |.  ||.++|+.|...|++|+..+++..
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~   43 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRL   43 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChH
Confidence            389999999995 54  999999999999999988877654

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.79  E-value=0.023  Score=47.22  Aligned_cols=38  Identities=29%  Similarity=0.348  Sum_probs=33.7

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      +|+||++.|.|. +.||+++|+.|...|++|.+.+|+.+
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLE   40 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            388999999986 77999999999999999999998653

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=92.77  E-value=0.029  Score=48.12  Aligned_cols=61  Identities=16%  Similarity=0.150  Sum_probs=45.0

Q ss_pred             CCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC--------------------CcccccCHHHhhcCCCEEEE
Q 043239          147 GGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV--------------------SYPFYANVSGLAADSDVLIV  205 (286)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------------------~~~~~~~l~e~l~~aDiV~~  205 (286)
                      .||+|.|.| .|-||+.+++.|.+.|++|.+..|+..+..                    ......++++++..+|.|+.
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~   89 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAH   89 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEE
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhh
Confidence            489999998 688999999999999999988776532210                    11123456678899998875


Q ss_pred             ec
Q 043239          206 CC  207 (286)
Q Consensus       206 ~l  207 (286)
                      +.
T Consensus        90 ~a   91 (342)
T d1y1pa1          90 IA   91 (342)
T ss_dssp             CC
T ss_pred             hc
Confidence            53

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.73  E-value=0.023  Score=47.02  Aligned_cols=38  Identities=29%  Similarity=0.271  Sum_probs=33.4

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      .|.||++.|.|. +.||+++|+.|...|++|...+|+.+
T Consensus         7 ~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~   45 (251)
T d2c07a1           7 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQK   45 (251)
T ss_dssp             CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            478999999986 57999999999999999999998654

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.50  E-value=0.016  Score=44.85  Aligned_cols=102  Identities=18%  Similarity=0.106  Sum_probs=63.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHhccCCC-EEEEECCCCCCCC-----Ccc-----cccCHH-Hhh-----cCCCEEEEecc
Q 043239          147 GGKRVGIVGL-GSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-----SYP-----FYANVS-GLA-----ADSDVLIVCCA  208 (286)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-----~~~-----~~~~l~-e~l-----~~aDiV~~~lp  208 (286)
                      .|.+|.|+|. |.+|...++.++..|. +|++.++++++..     +..     ...++. +..     ...|+++-|..
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g  106 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNN  106 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCC
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcccc
Confidence            4679999995 9999999999998885 8888888765422     211     112222 222     23788887765


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCC---cccCHHHHHHHHHhCCee
Q 043239          209 LTEETHHMINKDVMTALGKEGVIINVGRG---ALIDEKELVHFLVRGSLV  255 (286)
Q Consensus       209 ~~~~t~~~i~~~~l~~mk~g~ilvn~srg---~~vd~~al~~al~~~~i~  255 (286)
                      . +.+.    +..+..++++..++.++-.   -.++...+  .+++-++.
T Consensus       107 ~-~~~~----~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~--~~k~i~i~  149 (170)
T d1jvba2         107 S-EKTL----SVYPKALAKQGKYVMVGLFGADLHYHAPLI--TLSEIQFV  149 (170)
T ss_dssp             C-HHHH----TTGGGGEEEEEEEEECCSSCCCCCCCHHHH--HHHTCEEE
T ss_pred             c-chHH----HhhhhhcccCCEEEEeccccCccccCHHHH--HhCCcEEE
Confidence            2 2222    2346778899988888632   23555444  23444444

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=92.46  E-value=0.043  Score=43.14  Aligned_cols=33  Identities=33%  Similarity=0.414  Sum_probs=29.8

Q ss_pred             EEEEEcCChHHHHHHHHhccCCC-EEEEECCCCC
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKK  182 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~  182 (286)
                      +|.|||.|..|.+.|..|+..|+ +|++++++..
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~   35 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDH   35 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCC
Confidence            68999999999999999999997 6999988653

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.45  E-value=0.059  Score=44.48  Aligned_cols=39  Identities=28%  Similarity=0.455  Sum_probs=34.3

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCC
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      +|+||++.|-|. +.||+++|+.|...|++|.+.+|+.++
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   41 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEE   41 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            589999999986 459999999999999999999987643

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=92.30  E-value=0.09  Score=44.66  Aligned_cols=33  Identities=27%  Similarity=0.331  Sum_probs=28.9

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCCCEEEEECCCC
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      |+|.|.| .|-||+.+++.|.+.|++|++.+|..
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~   34 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLC   34 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5788887 79999999999999999999987643

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.30  E-value=0.065  Score=45.58  Aligned_cols=34  Identities=24%  Similarity=0.398  Sum_probs=29.4

Q ss_pred             CEEEEEcCChHHHHHHHHhccCC--CEEEEECCCCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFG--CSIAYTSRKKK  182 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g--~~V~~~~r~~~  182 (286)
                      |+|+|||.|..|..+|..|+..|  .+|+++.++..
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            68999999999999999987654  69999998754

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.10  E-value=0.065  Score=43.63  Aligned_cols=62  Identities=18%  Similarity=0.243  Sum_probs=45.1

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC--C-----cccccC---HHHhhcCCCEEEEec
Q 043239          146 LGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV--S-----YPFYAN---VSGLAADSDVLIVCC  207 (286)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--~-----~~~~~~---l~e~l~~aDiV~~~l  207 (286)
                      |+||++.|.|. +.||+++|+.|...|++|.+.+|+.+...  +     +.....   +.+-+.+-|+++.+.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnA   74 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNA   74 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEEECCTTTCHHHHHHHSCCCSEEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhcCCcEEEcchHHHHHHHHHHhCCCcEEEecc
Confidence            78999999996 56999999999999999999998764321  1     111122   334456789888764

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.01  E-value=0.061  Score=42.00  Aligned_cols=32  Identities=16%  Similarity=0.158  Sum_probs=29.8

Q ss_pred             EEEEcCChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          151 VGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       151 vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      |.|||.|..|...|..|+..|.+|++++++..
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~~   39 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQDH   39 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence            79999999999999999999999999998753

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.89  E-value=0.087  Score=42.07  Aligned_cols=34  Identities=18%  Similarity=0.269  Sum_probs=29.6

Q ss_pred             CEEEEEcCChHHHHHHHHhcc--CCCEEEEECCCCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVP--FGCSIAYTSRKKK  182 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~--~g~~V~~~~r~~~  182 (286)
                      .+|+|||.|..|.+.|..|+.  +|++|+++++.+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            389999999999999998864  6889999998764

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=91.88  E-value=0.079  Score=43.44  Aligned_cols=58  Identities=22%  Similarity=0.318  Sum_probs=37.5

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCC-CCcccccCHHHhhcC--CCEEEEec
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPG-VSYPFYANVSGLAAD--SDVLIVCC  207 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-~~~~~~~~l~e~l~~--aDiV~~~l  207 (286)
                      |+|.|.| .|-||+.+++.|...|..|. .++..... ........+++++++  .|+|+-+.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~v~-~~~~~~~~~~Dl~~~~~~~~~i~~~~~D~Vih~A   62 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNLIA-LDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAA   62 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEEEE-ECTTCSSSCCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEE-EECCCccccCcCCCHHHHHHHHHHcCCCEEEEec
Confidence            5789998 59999999999999886544 44433322 222223345566654  48876553

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.81  E-value=0.15  Score=41.11  Aligned_cols=63  Identities=14%  Similarity=0.203  Sum_probs=46.0

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhcc--------------------CCC-EEEEECCCCCCCCCcccccCHHHhhcCCC
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVP--------------------FGC-SIAYTSRKKKPGVSYPFYANVSGLAADSD  201 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~--------------------~g~-~V~~~~r~~~~~~~~~~~~~l~e~l~~aD  201 (286)
                      ...+.|++|.|||-|+.+..+|+.+..                    .|. +|+.+.|+......+. ...+.|+....+
T Consensus        34 ~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~~~~ft-~~Elre~~~~~~  112 (225)
T d1cjca1          34 APDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFT-IKELREMIQLPG  112 (225)
T ss_dssp             CCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCC-HHHHHHHHTCTT
T ss_pred             CccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChHhCCCC-chhhhcccccCC
Confidence            345789999999999999999998876                    466 6888887665433332 234667777777


Q ss_pred             EEEEe
Q 043239          202 VLIVC  206 (286)
Q Consensus       202 iV~~~  206 (286)
                      +.+..
T Consensus       113 ~~~~~  117 (225)
T d1cjca1         113 TRPML  117 (225)
T ss_dssp             EEEEC
T ss_pred             Cccee
Confidence            76654

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.76  E-value=0.065  Score=44.00  Aligned_cols=39  Identities=21%  Similarity=0.250  Sum_probs=34.0

Q ss_pred             cCCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCC
Q 043239          145 TLGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       145 ~l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      +|+||++.|.| .+.||+++|+.|...|++|++.+|+.++
T Consensus         3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~   42 (245)
T d2ag5a1           3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESK   42 (245)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            38999998887 5789999999999999999999987643

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=91.76  E-value=0.06  Score=44.97  Aligned_cols=37  Identities=35%  Similarity=0.403  Sum_probs=32.7

Q ss_pred             ccCCCCEEEEEcCC---hHHHHHHHHhccCCCEEEEECCC
Q 043239          144 STLGGKRVGIVGLG---SIGSEVAKRLVPFGCSIAYTSRK  180 (286)
Q Consensus       144 ~~l~g~~vgIiG~G---~iG~~~A~~l~~~g~~V~~~~r~  180 (286)
                      .+|+||++.|-|.+   .||.++|+.|...|++|++.+|+
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            36999999999986   59999999999999999887654

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.72  E-value=0.1  Score=39.26  Aligned_cols=39  Identities=23%  Similarity=0.227  Sum_probs=32.9

Q ss_pred             cCCCCEEEEE--cCChHHHHHHHHhccCCCEEEEECCCCCC
Q 043239          145 TLGGKRVGIV--GLGSIGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       145 ~l~g~~vgIi--G~G~iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      ..-++.+.|+  |.|.||.++|..|+.+|++|++..+....
T Consensus        36 ~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          36 KKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             SCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             cccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            3456777777  89999999999999999999999886543

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.66  E-value=0.03  Score=42.84  Aligned_cols=59  Identities=19%  Similarity=0.068  Sum_probs=41.0

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCCC-------EEEEECCCCCCCC-----------------CcccccCHHHhhcCCCEE
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFGC-------SIAYTSRKKKPGV-----------------SYPFYANVSGLAADSDVL  203 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g~-------~V~~~~r~~~~~~-----------------~~~~~~~l~e~l~~aDiV  203 (286)
                      ++|.|+| .|.+|..+|-.|...+.       .+..+|.......                 ......+..+.+++||+|
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvV   83 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA   83 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEE
Confidence            4899999 59999999998864322       4566776443210                 011235778899999999


Q ss_pred             EEec
Q 043239          204 IVCC  207 (286)
Q Consensus       204 ~~~l  207 (286)
                      +++.
T Consensus        84 Vita   87 (154)
T d5mdha1          84 ILVG   87 (154)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            9875

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.66  E-value=0.077  Score=41.89  Aligned_cols=62  Identities=21%  Similarity=0.276  Sum_probs=41.3

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccCCC--EEEEECCCCCCCCC-cc-cccCHHH----hhcCCCEEEEeccCC
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPFGC--SIAYTSRKKKPGVS-YP-FYANVSG----LAADSDVLIVCCALT  210 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~~-~~-~~~~l~e----~l~~aDiV~~~lp~~  210 (286)
                      |+|.|.|. |.+|+.+++.|.+.|.  +|....|+...... .. ...++.+    +....|.|+.|+..+
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~   73 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGTT   73 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhcccccccccchhhhhhccccchheeeeeeeee
Confidence            79999996 9999999999998887  56666665433221 11 1223333    344579998886443

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=91.56  E-value=0.056  Score=41.39  Aligned_cols=31  Identities=35%  Similarity=0.308  Sum_probs=27.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEE
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYT  177 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~  177 (286)
                      ++++|.|||.|.+|-++|..|+.+|.+|.+.
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~   32 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIR   32 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEE
Confidence            5789999999999999999999999865443

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=91.50  E-value=0.069  Score=43.62  Aligned_cols=32  Identities=25%  Similarity=0.226  Sum_probs=29.7

Q ss_pred             EEEEEcCChHHHHHHHHhccCCCEEEEECCCC
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      -|.|||.|.+|.++|..|...|.+|+++++..
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            38999999999999999999999999999854

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=91.42  E-value=0.096  Score=43.06  Aligned_cols=39  Identities=23%  Similarity=0.352  Sum_probs=34.5

Q ss_pred             cCCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCC
Q 043239          145 TLGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       145 ~l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      .|+||++.|-| .+.||+++|+.|...|++|.+.+|+.+.
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~   41 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG   41 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            37899999998 6779999999999999999999987653

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=91.39  E-value=0.052  Score=42.31  Aligned_cols=84  Identities=19%  Similarity=0.235  Sum_probs=59.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc-----cccC-HHHhh-----cCCCEEEEeccC
Q 043239          147 GGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP-----FYAN-VSGLA-----ADSDVLIVCCAL  209 (286)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~-----~~~~-l~e~l-----~~aDiV~~~lp~  209 (286)
                      .|.+|.|.|. |.+|...++.++..|++|++..+++++..     +..     ...+ .++++     ...|+|+-++. 
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG-  107 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG-  107 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC-
Confidence            5889999988 77999999999999999999887765421     211     0111 22222     44899988874 


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 043239          210 TEETHHMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       210 ~~~t~~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                       .++    -.+.++.++++..++.++.
T Consensus       108 -~~~----~~~~~~~l~~~G~~v~~G~  129 (182)
T d1v3va2         108 -GEF----LNTVLSQMKDFGKIAICGA  129 (182)
T ss_dssp             -HHH----HHHHGGGEEEEEEEEECCC
T ss_pred             -chh----hhhhhhhccCCCeEEeecc
Confidence             222    2467888999999999875

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=91.38  E-value=0.086  Score=43.71  Aligned_cols=38  Identities=29%  Similarity=0.401  Sum_probs=33.6

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      +|+||++.|.|. +.||+++|+.|...|++|++.+|+.+
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~   41 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADD   41 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999985 55999999999999999999998754

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=91.31  E-value=0.15  Score=43.32  Aligned_cols=128  Identities=16%  Similarity=0.162  Sum_probs=78.8

Q ss_pred             hHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccC----CC-------EEE
Q 043239          107 GADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPF----GC-------SIA  175 (286)
Q Consensus       107 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~----g~-------~V~  175 (286)
                      +|=-+++.+++.+|-                    .+++|...+|.|.|.|.-|..+|+.+...    |.       +++
T Consensus         4 Ta~V~lAglinAlki--------------------~gk~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~   63 (308)
T d1o0sa1           4 TASVIVAGLLTCTRV--------------------TKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIY   63 (308)
T ss_dssp             HHHHHHHHHHHHHHH--------------------HCCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEE
T ss_pred             HHHHHHHHHHHHHHH--------------------hCCCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEE
Confidence            455567777776664                    24568889999999999999999987643    32       477


Q ss_pred             EECCCCC----C--CC----C----cccccCHHHhhcCC--CEEEEeccCChhhhhcccHHHHhcC---CCCcEEEEcCC
Q 043239          176 YTSRKKK----P--GV----S----YPFYANVSGLAADS--DVLIVCCALTEETHHMINKDVMTAL---GKEGVIINVGR  236 (286)
Q Consensus       176 ~~~r~~~----~--~~----~----~~~~~~l~e~l~~a--DiV~~~lp~~~~t~~~i~~~~l~~m---k~g~ilvn~sr  236 (286)
                      .+|+..-    .  ..    .    .....++.++++..  ++++-+-    ...++++++.+..|   .+.++|.=.|.
T Consensus        64 ~vD~~Glv~~~r~d~~~~k~~~a~~~~~~~~l~~~i~~~kptvliG~s----~~~g~ft~evv~~Ma~~~~~PIIFaLSN  139 (308)
T d1o0sa1          64 LMDIDGLVTKNRKEMNPRHVQFAKDMPETTSILEVIRAARPGALIGAS----TVRGAFNEEVIRAMAEINERPIIFALSN  139 (308)
T ss_dssp             EEETTEECBTTCSSCCGGGTTTCBSSCCCCCHHHHHHHHCCSEEEECS----SCTTCSCHHHHHHHHHHCSSCEEEECCS
T ss_pred             EEeCCCCccCCCcccCHHHHHHHHhcccCCcHHHHHhccccccEEecc----cccCCCCHHHHHHHHhhCCCcEEEEccC
Confidence            7775321    1  11    0    11234677766543  5555442    13567888877655   58899999998


Q ss_pred             Cccc---CHHHHHHHHHhCCeeEEE
Q 043239          237 GALI---DEKELVHFLVRGSLVELV  258 (286)
Q Consensus       237 g~~v---d~~al~~al~~~~i~ga~  258 (286)
                      ...-   ..++.+++-+..-|...+
T Consensus       140 Ptp~~E~~~eda~~~t~G~ai~AtG  164 (308)
T d1o0sa1         140 PTSKAECTAEEAYTFTNGAALYASG  164 (308)
T ss_dssp             SGGGCSSCHHHHHHTTTSCCEEEES
T ss_pred             CCCCCCCCHHHHHhhccCcEEEecC
Confidence            8653   344444443333343333

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.25  E-value=0.072  Score=43.94  Aligned_cols=37  Identities=27%  Similarity=0.313  Sum_probs=31.2

Q ss_pred             ccCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEE-CCC
Q 043239          144 STLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYT-SRK  180 (286)
Q Consensus       144 ~~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~-~r~  180 (286)
                      +.|.||++.|.|. +.||.++|+.|...|++|++. +++
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~   40 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSS   40 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            4699999999985 459999999999999999874 443

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=91.20  E-value=0.032  Score=46.20  Aligned_cols=34  Identities=35%  Similarity=0.528  Sum_probs=27.4

Q ss_pred             CEEEEE-cC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          149 KRVGIV-GL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       149 ~~vgIi-G~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      |+|++| |. +.||+++|+.|...|++|.+.+|+.+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~   36 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDA   36 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            455544 54 56999999999999999999998754

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=91.18  E-value=0.078  Score=43.80  Aligned_cols=36  Identities=28%  Similarity=0.351  Sum_probs=31.9

Q ss_pred             CCCCEEEEEcCC-hHHHHHHHHhccCCCEEEEECCCC
Q 043239          146 LGGKRVGIVGLG-SIGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       146 l~g~~vgIiG~G-~iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      |+||++.|-|.+ .||+++|+.|...|++|++.+|+.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            689998888765 499999999999999999999875

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.15  E-value=0.091  Score=42.47  Aligned_cols=36  Identities=19%  Similarity=0.148  Sum_probs=31.7

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPG  184 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~  184 (286)
                      .+|.|||.|..|..+|..|+..|. +|.+++++....
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~   38 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR   38 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCC
Confidence            379999999999999999999996 899999876543

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.15  E-value=0.069  Score=44.50  Aligned_cols=38  Identities=26%  Similarity=0.354  Sum_probs=33.7

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      +|+||++.|.|. +.||+++|+.|...|++|.+.+|+.+
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~   40 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSE   40 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            589999999985 66999999999999999999998764

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=91.14  E-value=0.28  Score=37.37  Aligned_cols=38  Identities=18%  Similarity=0.247  Sum_probs=33.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPG  184 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~  184 (286)
                      .|.+|.|+|.|.+|...+..++..|. +|++.++++++.
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl   66 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKF   66 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHH
Confidence            57899999999999999999998877 688899887653

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.11  E-value=0.096  Score=44.10  Aligned_cols=32  Identities=28%  Similarity=0.438  Sum_probs=28.5

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCCCEEEEECCC
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRK  180 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~  180 (286)
                      |+|.|.| .|-||+.+++.|...|++|++.++.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~   34 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   34 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            6888887 7999999999999999999998763

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=91.08  E-value=0.23  Score=36.28  Aligned_cols=40  Identities=20%  Similarity=0.304  Sum_probs=35.0

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      +.-.+|++|+|||.|..+-.-|..|..+.-+|++.-|..+
T Consensus        22 ~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          22 GFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             GGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             hHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            3345899999999999999999999999889998887654

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.97  E-value=0.25  Score=36.81  Aligned_cols=47  Identities=21%  Similarity=0.406  Sum_probs=32.1

Q ss_pred             EEEEEc-CChHHHHHHHHhcc-CCCEEE-EECCCCCCCCCcccccCHHHh-hcCCCEEEEe
Q 043239          150 RVGIVG-LGSIGSEVAKRLVP-FGCSIA-YTSRKKKPGVSYPFYANVSGL-AADSDVLIVC  206 (286)
Q Consensus       150 ~vgIiG-~G~iG~~~A~~l~~-~g~~V~-~~~r~~~~~~~~~~~~~l~e~-l~~aDiV~~~  206 (286)
                      ||+|+| .|+||+.+++.+.. -++++. ++|+..          ++.+. ...+|+|+=.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~----------~~~~~~~~~~DvvIDF   51 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD----------PLSLLTDGNTEVVIDF   51 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC----------CTHHHHTTTCSEEEEC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC----------chhhhccccCCEEEEc
Confidence            699999 69999999998654 567765 555431          22222 2568988654

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.90  E-value=0.24  Score=39.57  Aligned_cols=65  Identities=23%  Similarity=0.367  Sum_probs=45.3

Q ss_pred             cccCCCCEEEEEcCChHHHHHHHHhc--------------------cCCC-EEEEECCCCCCCCCcccccCHHHhhcCCC
Q 043239          143 GSTLGGKRVGIVGLGSIGSEVAKRLV--------------------PFGC-SIAYTSRKKKPGVSYPFYANVSGLAADSD  201 (286)
Q Consensus       143 ~~~l~g~~vgIiG~G~iG~~~A~~l~--------------------~~g~-~V~~~~r~~~~~~~~~~~~~l~e~l~~aD  201 (286)
                      ...+.|++|.|||-|+.+..+|+.+.                    ..|. +|+.+.|+......+. ...+.|+.+-.+
T Consensus        34 ~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~~~~ft-~~Elre~~~l~~  112 (216)
T d1lqta1          34 SPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFT-TLELRELADLDG  112 (216)
T ss_dssp             CCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCC-HHHHHHGGGCTT
T ss_pred             CccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChHhCCCC-hhhhhhhcccCC
Confidence            34578999999999999999999876                    4666 6887777654433222 234667777677


Q ss_pred             EEEEecc
Q 043239          202 VLIVCCA  208 (286)
Q Consensus       202 iV~~~lp  208 (286)
                      +-+..-|
T Consensus       113 ~~~~~~~  119 (216)
T d1lqta1         113 VDVVIDP  119 (216)
T ss_dssp             EEEECCG
T ss_pred             CCccCCH
Confidence            6665443

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.84  E-value=0.093  Score=44.15  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=30.2

Q ss_pred             EEEEEcCChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      .|.|||.|..|..+|+.|+..|.+|++++++..
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            589999999999999999999999999987654

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.68  E-value=0.11  Score=43.93  Aligned_cols=38  Identities=29%  Similarity=0.463  Sum_probs=33.9

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+|+.+
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~   47 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLE   47 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            599999999985 55999999999999999999998753

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.64  E-value=0.065  Score=44.25  Aligned_cols=33  Identities=24%  Similarity=0.332  Sum_probs=30.6

Q ss_pred             EEEEEcCChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      +|.|||.|..|..+|..|+..|.+|.++++.+.
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            599999999999999999999999999998753

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=90.63  E-value=0.1  Score=37.49  Aligned_cols=38  Identities=26%  Similarity=0.119  Sum_probs=30.8

Q ss_pred             CCEEEEEcCChHHHHHHHHhc---cCCCEEEEECCCCCCCC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLV---PFGCSIAYTSRKKKPGV  185 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~---~~g~~V~~~~r~~~~~~  185 (286)
                      .+++.|||.|.+|-++|..+.   ..|.+|..+.+++.-..
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~   58 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR   58 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccccccc
Confidence            479999999999999997654   55889999888765543

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.59  E-value=0.092  Score=43.22  Aligned_cols=38  Identities=24%  Similarity=0.344  Sum_probs=32.6

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCC
Q 043239          146 LGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       146 l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      +.||++.|-|. +.||+++|+.|...|++|...+|+.++
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   39 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEA   39 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            36899999986 559999999999999999999987543

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=90.48  E-value=0.094  Score=41.00  Aligned_cols=98  Identities=14%  Similarity=0.186  Sum_probs=59.9

Q ss_pred             CCEEEEEcC-ChHHHHHHHHhcc---CCC----EEEEECCCCCCC--C---------------CcccccCHHHhhcCCCE
Q 043239          148 GKRVGIVGL-GSIGSEVAKRLVP---FGC----SIAYTSRKKKPG--V---------------SYPFYANVSGLAADSDV  202 (286)
Q Consensus       148 g~~vgIiG~-G~iG~~~A~~l~~---~g~----~V~~~~r~~~~~--~---------------~~~~~~~l~e~l~~aDi  202 (286)
                      -.+|.|+|. |.||..++-+|..   ||.    .+..+|......  .               ......+..+.++++|+
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDv  103 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW  103 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCce
Confidence            348999996 9999999999875   443    455667654321  0               11234678899999999


Q ss_pred             EEEeccCC--hh---------hhhcc---cHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 043239          203 LIVCCALT--EE---------THHMI---NKDVMTALGKEGVIINVGRGALIDEKELVH  247 (286)
Q Consensus       203 V~~~lp~~--~~---------t~~~i---~~~~l~~mk~g~ilvn~srg~~vd~~al~~  247 (286)
                      |++.....  +.         +..++   .+..-+..+++++++=++  .++|.-+++.
T Consensus       104 Vvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~--NPvd~~t~ia  160 (175)
T d7mdha1         104 ALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG--NPCNTNALIC  160 (175)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS--SSHHHHHHHH
T ss_pred             EEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec--CcHHHHHHHH
Confidence            99875221  10         11111   111223346677777674  4688777753

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=90.42  E-value=0.19  Score=39.24  Aligned_cols=94  Identities=12%  Similarity=0.149  Sum_probs=60.2

Q ss_pred             CCCEEEEE--cCChHHHHHHHHhccCCCEEEEECCCCCCCC---------Ccccc--------cC----HHHhh----cC
Q 043239          147 GGKRVGIV--GLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV---------SYPFY--------AN----VSGLA----AD  199 (286)
Q Consensus       147 ~g~~vgIi--G~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~---------~~~~~--------~~----l~e~l----~~  199 (286)
                      .|.++.|+  |.|.+|....+.++.+|++|++..++.+..+         +....        .+    ..++.    ..
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~  107 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE  107 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCC
Confidence            47788888  6799999999999999999987766544311         21110        11    12221    24


Q ss_pred             CCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCC--Ccc--cCHHHHH
Q 043239          200 SDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGR--GAL--IDEKELV  246 (286)
Q Consensus       200 aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~sr--g~~--vd~~al~  246 (286)
                      .|+++-++. .+.     ....+..|+++..+|.++.  +..  ++...++
T Consensus       108 vdvv~D~vg-~~~-----~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~l~  152 (189)
T d1gu7a2         108 AKLALNCVG-GKS-----STGIARKLNNNGLMLTYGGMSFQPVTIPTSLYI  152 (189)
T ss_dssp             EEEEEESSC-HHH-----HHHHHHTSCTTCEEEECCCCSSCCEEECHHHHH
T ss_pred             ceEEEECCC-cch-----hhhhhhhhcCCcEEEEECCccCCCccCcHHHHH
Confidence            788887764 121     1457888999999999863  322  4555443

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.34  E-value=0.16  Score=41.11  Aligned_cols=38  Identities=18%  Similarity=0.218  Sum_probs=32.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCC
Q 043239          147 GGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPG  184 (286)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~  184 (286)
                      .||+|.|.|. |.||+++|+.|.+.|++|...++.....
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~   39 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEE   39 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence            4899999986 6699999999999999999887765543

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=90.22  E-value=0.031  Score=42.81  Aligned_cols=95  Identities=16%  Similarity=0.184  Sum_probs=54.1

Q ss_pred             CEEEEEcC-ChHHHHHHHHhccCCC-------EEEEECCCCC--CCC---------------CcccccCHHHhhcCCCEE
Q 043239          149 KRVGIVGL-GSIGSEVAKRLVPFGC-------SIAYTSRKKK--PGV---------------SYPFYANVSGLAADSDVL  203 (286)
Q Consensus       149 ~~vgIiG~-G~iG~~~A~~l~~~g~-------~V~~~~r~~~--~~~---------------~~~~~~~l~e~l~~aDiV  203 (286)
                      ++|.|+|. |.+|+.+|..|...+.       ....++....  ...               ......+..+.+++||+|
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~advV   84 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYA   84 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccEE
Confidence            48999996 9999999999876432       1222322211  100               111235678899999999


Q ss_pred             EEeccCC--hh-hh-hcc--c----HH----HHhcCCCCcEEEEcCCCcccCHHHH
Q 043239          204 IVCCALT--EE-TH-HMI--N----KD----VMTALGKEGVIINVGRGALIDEKEL  245 (286)
Q Consensus       204 ~~~lp~~--~~-t~-~~i--~----~~----~l~~mk~g~ilvn~srg~~vd~~al  245 (286)
                      +++.-..  +. ++ .++  +    ++    .-+..+++++++.++.  ++|.-..
T Consensus        85 iitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN--PvDv~t~  138 (154)
T d1y7ta1          85 LLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN--PANTNAL  138 (154)
T ss_dssp             EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHH
T ss_pred             EeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC--cHHHHHH
Confidence            9875221  11 11 111  1    11    2222466788888854  5665544

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=90.10  E-value=0.1  Score=42.88  Aligned_cols=38  Identities=32%  Similarity=0.423  Sum_probs=33.7

Q ss_pred             cCCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      +|+||++.|-| .+.||+++|+.|...|++|.+.+|+.+
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   41 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSD   41 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            48999999998 466999999999999999999998754

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=90.06  E-value=0.084  Score=41.07  Aligned_cols=31  Identities=35%  Similarity=0.571  Sum_probs=26.7

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSR  179 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r  179 (286)
                      ++|||=|||+||+.+.|.|...+.+|.+.+-
T Consensus         1 ikigINGfGRIGR~~~R~l~~~~i~iv~INd   31 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSRGVEVALIND   31 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEECC
Confidence            4899999999999999998877888876653

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.96  E-value=0.099  Score=43.56  Aligned_cols=38  Identities=29%  Similarity=0.413  Sum_probs=33.4

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      +|+||++.|-|. +.||+++|+.|...|++|.+.+|+.+
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   39 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNED   39 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            378999999986 56999999999999999999998754

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=89.87  E-value=0.057  Score=44.60  Aligned_cols=35  Identities=26%  Similarity=0.354  Sum_probs=28.4

Q ss_pred             CCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          148 GKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       148 g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      ||.+.|-|. +.||+++|+.|...|++|.+.+|+.+
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~   37 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEE   37 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            455566664 56999999999999999999998653

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=89.85  E-value=0.13  Score=43.42  Aligned_cols=35  Identities=26%  Similarity=0.222  Sum_probs=31.5

Q ss_pred             CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      ...|.|||.|..|-.+|..|+..|.+|+++++.++
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            44799999999999999999999999999997654

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=89.45  E-value=0.1  Score=40.48  Aligned_cols=35  Identities=14%  Similarity=0.096  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      +++.|.|||-|..|.+.|..++.+|++|+++++..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            45789999999999999999999999999887643

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=89.43  E-value=0.14  Score=41.96  Aligned_cols=31  Identities=26%  Similarity=0.326  Sum_probs=29.1

Q ss_pred             EEEEcCChHHHHHHHHhccCCCEEEEECCCC
Q 043239          151 VGIVGLGSIGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       151 vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      |.|||.|.+|.++|..|+..|++|++.++..
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            8999999999999999999999999999754

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=89.41  E-value=0.29  Score=41.34  Aligned_cols=128  Identities=19%  Similarity=0.176  Sum_probs=81.6

Q ss_pred             hHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccC----CC-------EEE
Q 043239          107 GADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPF----GC-------SIA  175 (286)
Q Consensus       107 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~----g~-------~V~  175 (286)
                      +|=-+++.+|+.+|-                    .+++|...+|.|.|.|..|..+|+.+...    |.       +++
T Consensus         4 TaaV~lAglinAlki--------------------~gk~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~   63 (298)
T d1gq2a1           4 TASVAVAGLLAALRI--------------------TKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIW   63 (298)
T ss_dssp             HHHHHHHHHHHHHHH--------------------HTSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEE
T ss_pred             HHHHHHHHHHHHHHH--------------------hCCCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEE
Confidence            455677777777665                    24568899999999999999999988643    21       577


Q ss_pred             EECCCCC----C--CCC--------cccccCHHHhhcC--CCEEEEeccCChhhhhcccHHHHh---cCCCCcEEEEcCC
Q 043239          176 YTSRKKK----P--GVS--------YPFYANVSGLAAD--SDVLIVCCALTEETHHMINKDVMT---ALGKEGVIINVGR  236 (286)
Q Consensus       176 ~~~r~~~----~--~~~--------~~~~~~l~e~l~~--aDiV~~~lp~~~~t~~~i~~~~l~---~mk~g~ilvn~sr  236 (286)
                      .+|+..-    +  ...        .....++.++++.  .++++-...    .-++++++.+.   .|.+.++|.=.|+
T Consensus        64 l~D~kGlv~~~R~~l~~~k~~~a~~~~~~~~l~~~i~~vkptvliG~s~----~~g~ft~evv~~ma~~~~~PIIFaLSN  139 (298)
T d1gq2a1          64 MVDSKGLIVKGRASLTPEKEHFAHEHCEMKNLEDIVKDIKPTVLIGVAA----IGGAFTQQILQDMAAFNKRPIIFALSN  139 (298)
T ss_dssp             EEETTEECBTTCSSCCTTGGGGCBSCCCCCCHHHHHHHHCCSEEEECSC----CTTCSCHHHHHHHHHHCSSCEEEECCS
T ss_pred             EEeCCCcccCCCcccCHHHHHHHHHhhhhhhhHHHhhccChheeEeccc----ccCcCCHHHHHHHHhhCCCCEEEEccC
Confidence            7775321    1  111        1123467776654  556655432    24678887766   4568899999997


Q ss_pred             Cccc---CHHHHHHHHHhCCeeEEE
Q 043239          237 GALI---DEKELVHFLVRGSLVELV  258 (286)
Q Consensus       237 g~~v---d~~al~~al~~~~i~ga~  258 (286)
                      ...-   +.++.+++-+.+-|...+
T Consensus       140 Pt~~~E~~~~~a~~wt~G~ai~AsG  164 (298)
T d1gq2a1         140 PTSKAECTAEQLYKYTEGRGIFASG  164 (298)
T ss_dssp             SGGGCSSCHHHHHHHTTTCCEEEES
T ss_pred             CCCcCCCCHHHHhhhcccceEEeec
Confidence            7542   455666665555554443

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=89.39  E-value=0.13  Score=42.72  Aligned_cols=32  Identities=31%  Similarity=0.545  Sum_probs=29.0

Q ss_pred             EEEEEcCChHHHHHHHHhccCCC-EEEEECCCC
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKK  181 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~  181 (286)
                      .|.|||.|.+|.++|..|+..|. +|++.+++.
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            58999999999999999999997 699998864

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.36  E-value=0.035  Score=46.35  Aligned_cols=37  Identities=27%  Similarity=0.461  Sum_probs=31.7

Q ss_pred             CCCEEEEE--cCChHHHHHHHHhcc-CCCEEEEECCCCCC
Q 043239          147 GGKRVGIV--GLGSIGSEVAKRLVP-FGCSIAYTSRKKKP  183 (286)
Q Consensus       147 ~g~~vgIi--G~G~iG~~~A~~l~~-~g~~V~~~~r~~~~  183 (286)
                      +||+|+||  |-+-||.++|+.|.+ .|.+|+..+|+.++
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~   40 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTR   40 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            58999999  778899999999876 48999999987654

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.04  E-value=0.12  Score=42.82  Aligned_cols=31  Identities=29%  Similarity=0.309  Sum_probs=28.9

Q ss_pred             EEEEcCChHHHHHHHHhccCCCEEEEECCCC
Q 043239          151 VGIVGLGSIGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       151 vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      |.|||.|..|...|..|+..|++|++++++.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            7899999999999999999999999998754

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.94  E-value=0.024  Score=45.37  Aligned_cols=25  Identities=32%  Similarity=0.287  Sum_probs=22.8

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCE
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCS  173 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~  173 (286)
                      ++|.|||.|.+|.+.|..|+..|++
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~   25 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHS   25 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCC
Confidence            5899999999999999999988864

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.79  E-value=0.15  Score=42.07  Aligned_cols=38  Identities=24%  Similarity=0.291  Sum_probs=33.6

Q ss_pred             cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      +|+||++.|.|. +.||+++|+.|...|++|...+|+.+
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAE   40 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            588999988874 78999999999999999999998754

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=88.73  E-value=0.28  Score=36.65  Aligned_cols=33  Identities=30%  Similarity=0.387  Sum_probs=28.3

Q ss_pred             CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      .+|.|||.|.+|-++|..|+. +.+|+++++.+.
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~   33 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPV   33 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEecccc
Confidence            379999999999999999976 679999887543

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=88.69  E-value=0.17  Score=40.49  Aligned_cols=32  Identities=22%  Similarity=0.248  Sum_probs=29.7

Q ss_pred             EEEEcCChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          151 VGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       151 vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      |.|||.|..|...|..|+..|++|+++++...
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            78999999999999999999999999998654

>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Transcarbamylase-like protein
species: Bacteroides fragilis [TaxId: 817]

Probab=88.38  E-value=1.4  Score=33.47  Aligned_cols=84  Identities=6%  Similarity=0.018  Sum_probs=55.0

Q ss_pred             HHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCC---hh--------hhhcccHHHH
Q 043239          159 IGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALT---EE--------THHMINKDVM  222 (286)
Q Consensus       159 iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~---~~--------t~~~i~~~~l  222 (286)
                      +..+.+..+..+|+++.+..+..-...     ......++.+.++++|+|..-.-..   +.        ....+++ .+
T Consensus        21 Va~S~i~~l~~~G~~v~~~~P~~~~p~~~~~~~~~~~~d~~eav~~aDvI~td~w~s~~~~~~~~~~~~~~~~~~~~-~l   99 (161)
T d1js1x2          21 VPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGD-RQ   99 (161)
T ss_dssp             HHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECCCCCCSTTCTTCCCCCCTTSSBCH-HH
T ss_pred             HHHHHHHHHHHcCCEEEEECCcccCCCHHHhCCceEecCHHHHhCCCcceeeehhhhhcchhHHHHHHHhhhhhhhH-HH
Confidence            788999999999999998887544322     3345679999999999997632111   00        1111233 34


Q ss_pred             hcCCCCcEEEEcC---CCcccCHH
Q 043239          223 TALGKEGVIINVG---RGALIDEK  243 (286)
Q Consensus       223 ~~mk~g~ilvn~s---rg~~vd~~  243 (286)
                      ..++++++|.-++   ||.=|+.+
T Consensus       100 ~~~~~dai~MHclPa~Rg~EIs~e  123 (161)
T d1js1x2         100 MAVTNNAYFMHCLPVRRNMIVTDD  123 (161)
T ss_dssp             HTTSSSCEEECCSCCCBTTTBCHH
T ss_pred             hhcCCceEEcCCCccccchhcchh
Confidence            4467788888886   66545443

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.35  E-value=0.32  Score=34.79  Aligned_cols=38  Identities=24%  Similarity=0.167  Sum_probs=29.7

Q ss_pred             CCEEEEEcCChHHHHHHHHhccC---CCEEEEECCCCCCCC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVPF---GCSIAYTSRKKKPGV  185 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~~---g~~V~~~~r~~~~~~  185 (286)
                      .+++.|||.|.+|-++|..+..+   |.+|+.+.+...-..
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~   60 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILR   60 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSST
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhc
Confidence            46999999999999999766554   557988887665543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=88.29  E-value=0.18  Score=39.69  Aligned_cols=30  Identities=27%  Similarity=0.236  Sum_probs=28.1

Q ss_pred             EEEEcCChHHHHHHHHhccCCCEEEEECCC
Q 043239          151 VGIVGLGSIGSEVAKRLVPFGCSIAYTSRK  180 (286)
Q Consensus       151 vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~  180 (286)
                      |.|||.|..|...|.+++.+|.+|.++++.
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999999763

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.27  E-value=0.11  Score=41.32  Aligned_cols=34  Identities=18%  Similarity=0.132  Sum_probs=29.5

Q ss_pred             CEEEEEcCChHHHHHHHHhccCC-------CEEEEECCCCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFG-------CSIAYTSRKKK  182 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g-------~~V~~~~r~~~  182 (286)
                      .+|+|||.|.-|-+.|..|...|       ++|.+|++.+.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            48999999999999999998766       58999987653

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=88.23  E-value=0.18  Score=39.28  Aligned_cols=33  Identities=18%  Similarity=0.319  Sum_probs=28.1

Q ss_pred             CEEEEEcCChHHHHHHHHhccC--CCEEEEECCCC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF--GCSIAYTSRKK  181 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~--g~~V~~~~r~~  181 (286)
                      |+|.|||.|.+|-++|..|+..  +.+|+++++..
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            6899999999999999999876  45788887654

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.19  E-value=0.11  Score=40.52  Aligned_cols=111  Identities=13%  Similarity=0.070  Sum_probs=69.8

Q ss_pred             CCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc---ccc-CHHHhh-----cCCCEEEEeccCC
Q 043239          146 LGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP---FYA-NVSGLA-----ADSDVLIVCCALT  210 (286)
Q Consensus       146 l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~---~~~-~l~e~l-----~~aDiV~~~lp~~  210 (286)
                      -.|.+|.|.| .|.+|....+.++..|++|++..+++++..     +..   ... ..++..     ...|+|+-++...
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vgg~  109 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGGR  109 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTTT
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCCch
Confidence            4588999999 699999999999999999999888776642     211   111 112221     3477887776421


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCC-CcccCHHHHHHHHHhCCeeEEEeeccC
Q 043239          211 EETHHMINKDVMTALGKEGVIINVGR-GALIDEKELVHFLVRGSLVELVLMCLR  263 (286)
Q Consensus       211 ~~t~~~i~~~~l~~mk~g~ilvn~sr-g~~vd~~al~~al~~~~i~ga~lDv~~  263 (286)
                            .-...+..|+++..++.++. ++....-.+...+. ++++-.++|...
T Consensus       110 ------~~~~~l~~l~~~Griv~~G~~~g~~~~~~~~~~~~-k~~~i~Gv~~~~  156 (176)
T d1xa0a2         110 ------TLATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFIL-RGVSLLGIDSVY  156 (176)
T ss_dssp             ------THHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHH-TTCEEEECCSSS
T ss_pred             ------hHHHHHHHhCCCceEEEeecccCcccCCCHHHHHH-CCcEEEEEeCCc
Confidence                  23578888999999999873 33333333333332 245545666543

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=88.08  E-value=0.2  Score=40.58  Aligned_cols=34  Identities=24%  Similarity=0.226  Sum_probs=27.6

Q ss_pred             EEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCC
Q 043239          150 RVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       150 ~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      .|.|.| .+.||+++|+.|...|++|++.+++..+
T Consensus         3 VvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~   37 (257)
T d1fjha_           3 IIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE   37 (257)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH
Confidence            455556 4679999999999999999988886543

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=87.93  E-value=0.27  Score=41.31  Aligned_cols=60  Identities=20%  Similarity=0.195  Sum_probs=39.6

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCCC-EEEEECCCCCCCC------Cc-------ccccCHHH-hhcCCCEEEEecc
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV------SY-------PFYANVSG-LAADSDVLIVCCA  208 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~------~~-------~~~~~l~e-~l~~aDiV~~~lp  208 (286)
                      |+|.|.| .|-||+.+++.|.+.|+ +|++.++......      .+       ....++.+ +..++|+|+-+.-
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~   76 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA   76 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCccccccc
Confidence            5788887 69999999999988884 8998876443211      11       11122333 6778998866543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=87.69  E-value=0.26  Score=38.74  Aligned_cols=88  Identities=15%  Similarity=0.215  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-----Ccc-----cccCHH----Hhhc--CCCEEEEeccC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-----SYP-----FYANVS----GLAA--DSDVLIVCCAL  209 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-----~~~-----~~~~l~----e~l~--~aDiV~~~lp~  209 (286)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.++++++.+     +..     ...++.    ++..  .+|+++-++..
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG~  104 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGF  104 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCCT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECccc
Confidence            47899999999999999999998888 7888888765422     111     012222    2222  47888877642


Q ss_pred             Chh-----------hhhcccHHHHhcCCCCcEEEEcC
Q 043239          210 TEE-----------THHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       210 ~~~-----------t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      ...           +...+ +..+..++++..++-++
T Consensus       105 ~~~~~~~~~~~~~~~~~~l-~~~~~~~r~gG~v~~~G  140 (195)
T d1kola2         105 EARGHGHEGAKHEAPATVL-NSLMQVTRVAGKIGIPG  140 (195)
T ss_dssp             TCBCSSTTGGGSBCTTHHH-HHHHHHEEEEEEEEECS
T ss_pred             cccCCcccceeecCcHHHH-HHHHHHHhcCCEEEEee
Confidence            100           01111 34556678888777775

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=87.67  E-value=0.71  Score=37.08  Aligned_cols=64  Identities=19%  Similarity=0.237  Sum_probs=41.8

Q ss_pred             cCCCCEEEEEc-----------------CChHHHHHHHHhccCCCEEEEECCCCC-CCC-Ccc--cccC-------HHHh
Q 043239          145 TLGGKRVGIVG-----------------LGSIGSEVAKRLVPFGCSIAYTSRKKK-PGV-SYP--FYAN-------VSGL  196 (286)
Q Consensus       145 ~l~g~~vgIiG-----------------~G~iG~~~A~~l~~~g~~V~~~~r~~~-~~~-~~~--~~~~-------l~e~  196 (286)
                      +|+|++|.|-+                 -|.||.++|+.+..+|++|+++.-... ... ...  ...+       +.+.
T Consensus         3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~~p~~~~~~~~~t~~~m~~~~~~~   82 (223)
T d1u7za_           3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNAS   82 (223)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCCCTTEEEEECCSHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccCcccccccceehhhHHHHHHHHhh
Confidence            56777777663                 578999999999999999976643222 222 111  1222       2345


Q ss_pred             hcCCCEEEEecc
Q 043239          197 AADSDVLIVCCA  208 (286)
Q Consensus       197 l~~aDiV~~~lp  208 (286)
                      ++++|+++.+.-
T Consensus        83 ~~~~D~~i~aAA   94 (223)
T d1u7za_          83 VQQQNIFIGCAA   94 (223)
T ss_dssp             GGGCSEEEECCB
T ss_pred             hccceeEeeeec
Confidence            688998887643

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=87.65  E-value=0.13  Score=40.06  Aligned_cols=29  Identities=28%  Similarity=0.598  Sum_probs=25.4

Q ss_pred             EEEEEcCChHHHHHHHHhccCCCEEEEEC
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTS  178 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~~V~~~~  178 (286)
                      +|||=|+|+||+.+.|.+...+.+|...+
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~~ivaIN   30 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGAQVVAVN   30 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEC
Confidence            79999999999999999988788877654

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.62  E-value=0.14  Score=39.80  Aligned_cols=35  Identities=17%  Similarity=0.024  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      +.++|.|||.|..|.+.|..+..+|++|+++++..
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            45789999999999999999999999999887544

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=87.17  E-value=0.13  Score=39.61  Aligned_cols=83  Identities=10%  Similarity=0.071  Sum_probs=56.9

Q ss_pred             CCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHH----h-----hcCCCEEEEeccCCh
Q 043239          147 GGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSG----L-----AADSDVLIVCCALTE  211 (286)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e----~-----l~~aDiV~~~lp~~~  211 (286)
                      .|.+|.|-| .|.+|....+.++.+|++|++..++.++..     +....-+-++    .     -...|+|+-++-.  
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vgg--  100 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGG--  100 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCCT--
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecCcH--
Confidence            466789988 699999999999999999999888876642     2211111111    1     1346777766531  


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcC
Q 043239          212 ETHHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       212 ~t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      +    .-.+.++.++++..+|.++
T Consensus       101 ~----~~~~~~~~l~~~G~iv~~G  120 (167)
T d1tt7a2         101 K----QLASLLSKIQYGGSVAVSG  120 (167)
T ss_dssp             H----HHHHHHTTEEEEEEEEECC
T ss_pred             H----HHHHHHHHhccCceEEEee
Confidence            1    1246788899999999886

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=87.15  E-value=0.2  Score=38.97  Aligned_cols=30  Identities=20%  Similarity=0.277  Sum_probs=23.4

Q ss_pred             CEEEEEcCChHHHHHHHHhccCC---CEEEEEC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPFG---CSIAYTS  178 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~g---~~V~~~~  178 (286)
                      ++|||=|+|+||+.+.|.+....   ++|+..+
T Consensus         1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaIN   33 (172)
T d1rm4a1           1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVIN   33 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEc
Confidence            48999999999999999876432   5666554

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=87.05  E-value=0.29  Score=40.84  Aligned_cols=35  Identities=23%  Similarity=0.231  Sum_probs=30.2

Q ss_pred             EEEEEcCChHHHHHHHHhc-----cCCCEEEEECCCCCCC
Q 043239          150 RVGIVGLGSIGSEVAKRLV-----PFGCSIAYTSRKKKPG  184 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~-----~~g~~V~~~~r~~~~~  184 (286)
                      -|.|||.|..|..+|..|.     ..|++|+++++.+...
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            3899999999999999995     5799999999876554

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.99  E-value=0.3  Score=35.95  Aligned_cols=37  Identities=30%  Similarity=0.325  Sum_probs=30.7

Q ss_pred             CCEEEEEcCChHHHHHHHHh----ccCCCEEEEECCCCCCC
Q 043239          148 GKRVGIVGLGSIGSEVAKRL----VPFGCSIAYTSRKKKPG  184 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l----~~~g~~V~~~~r~~~~~  184 (286)
                      ++++.|||.|.+|-++|..|    +..|.+|+...+.....
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l   77 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM   77 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCC
Confidence            56999999999999998877    45789999988876554

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=86.98  E-value=0.27  Score=39.22  Aligned_cols=37  Identities=14%  Similarity=0.192  Sum_probs=30.8

Q ss_pred             CCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCC
Q 043239          148 GKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPG  184 (286)
Q Consensus       148 g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~  184 (286)
                      +|++.|-|. +.||+++|+.|...|++|++.+|+.+..
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~   38 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREGE   38 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcccc
Confidence            366777765 7899999999999999999999877653

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.95  E-value=0.3  Score=40.57  Aligned_cols=34  Identities=21%  Similarity=0.282  Sum_probs=29.7

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      |+|.|.| .|-||+.+++.|...|++|.+.+|...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            5788887 699999999999999999999988654

>d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB
species: Escherichia coli [TaxId: 562]

Probab=86.79  E-value=0.73  Score=39.91  Aligned_cols=91  Identities=15%  Similarity=0.183  Sum_probs=67.6

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-----C--------Cccc----------ccCHHHhhcCCC
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----V--------SYPF----------YANVSGLAADSD  201 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~--------~~~~----------~~~l~e~l~~aD  201 (286)
                      .|.|.+|.=++-+..|-..++.|..+|.+|+=+.+.....     .        +.+.          ..-+.+++++||
T Consensus         8 PL~GirVld~~~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~r~~~~~~~~~n~~K~si~ldl~~~~G~~~~~~Lv~~aD   87 (402)
T d1xk7a1           8 PLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTD   87 (402)
T ss_dssp             TTTTCEEEEECCSSHHHHHHHHHHHTTCEEEEEECSSSCCGGGGSSSHHHHHTTTCEEEEECTTSHHHHHHHHHHHTTCS
T ss_pred             CCCCCEEEEeCChhHHHHHHHHHHHhCCeEEEECCCCCCCccccCCchhHHhCCCCeEEEEeCcCHHHHHHHHHHHhhcC
Confidence            4899999999999999999999999999998776533111     0        1110          122568999999


Q ss_pred             EEEEeccCChhhhhcccHHHHhcCCCCcEEEEcC
Q 043239          202 VLIVCCALTEETHHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       202 iV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      ||+-..+...--+-=++.+.+..++|.-|.+.++
T Consensus        88 v~i~n~rpg~~~~lGl~~~~L~~~nP~lI~~sis  121 (402)
T d1xk7a1          88 IFIEASKGPAFARRGITDEVLWQHNPKLVIAHLS  121 (402)
T ss_dssp             EEEEECSSSHHHHTTCCHHHHHHHCTTCEEEEEE
T ss_pred             Cceeeecccccccccccccchhhccccccceeee
Confidence            9998776444444446888999999999999883

>d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: 2-methylacyl-CoA racemase Mcr
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.62  E-value=0.69  Score=39.42  Aligned_cols=90  Identities=17%  Similarity=0.094  Sum_probs=66.1

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-C-------Ccc----------cccCHHHhhcCCCEEEEe
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-V-------SYP----------FYANVSGLAADSDVLIVC  206 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-~-------~~~----------~~~~l~e~l~~aDiV~~~  206 (286)
                      .|.|-+|.=++-+..|-...+.|..+|.+|+=+.+..... .       +.+          ...-+.+++++||||+-.
T Consensus         3 PL~girVld~~~~~agp~~~~~lad~GA~VikvE~p~~~~~~~~~~~nr~K~si~lDl~~~~g~~~~~~Lv~~aDv~i~n   82 (359)
T d1x74a1           3 PLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGISRDAMLRNRRIVTADLKSDQGLELALKLIAKADVLIEG   82 (359)
T ss_dssp             TTTTCEEEEECCSTHHHHHHHHHHHTTCEEEEEECC-----CCCCGGGCSCEEEECCTTSHHHHHHHHHHHTTCSEEEEC
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHHHhCCEEEEECCCCCCCchhhhhhhCCCeEEEEeCcCHHHHHHHHHHHhhCCEEEec
Confidence            4789999999999999999999999999998775432211 0       100          012356789999999987


Q ss_pred             ccCChhhhhcccHHHHhcCCCCcEEEEc
Q 043239          207 CALTEETHHMINKDVMTALGKEGVIINV  234 (286)
Q Consensus       207 lp~~~~t~~~i~~~~l~~mk~g~ilvn~  234 (286)
                      .+...-.+-=++.+.+...+|+.|++.+
T Consensus        83 ~~pg~~~~lgl~~~~l~~~nP~lI~~si  110 (359)
T d1x74a1          83 YRPGVTERLGLGPEECAKVNDRLIYARM  110 (359)
T ss_dssp             SCTTHHHHHTCSHHHHHHHCTTCEEEEE
T ss_pred             CCCCchhhcCCCHHHHHhhcCCceEEEE
Confidence            7654444444688899999999999998

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.95  E-value=0.27  Score=42.29  Aligned_cols=31  Identities=26%  Similarity=0.329  Sum_probs=27.9

Q ss_pred             CCEEEEEc-CChHHHHHHHHhccCCCEEEEEC
Q 043239          148 GKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTS  178 (286)
Q Consensus       148 g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~  178 (286)
                      ||+|.|.| .|-||+.+++.|...|++|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            78999997 69999999999999999999986

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=85.80  E-value=0.45  Score=39.39  Aligned_cols=30  Identities=23%  Similarity=0.340  Sum_probs=26.1

Q ss_pred             EEEEEc-CChHHHHHHHHhccCCCEEEEECC
Q 043239          150 RVGIVG-LGSIGSEVAKRLVPFGCSIAYTSR  179 (286)
Q Consensus       150 ~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r  179 (286)
                      +|.|.| .|-||+.+++.|...|++|.++++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            566775 799999999999999999999874

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=85.71  E-value=0.23  Score=38.95  Aligned_cols=31  Identities=23%  Similarity=0.300  Sum_probs=28.5

Q ss_pred             EEEEcCChHHHHHHHHhccCCCEEEEECCCC
Q 043239          151 VGIVGLGSIGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       151 vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      |.|||.|..|...|..++.+|.+|+++++..
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            7899999999999999999999999998653

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.64  E-value=0.5  Score=35.64  Aligned_cols=36  Identities=19%  Similarity=0.173  Sum_probs=29.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHhccCCCE-EEEECCCCC
Q 043239          147 GGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKK  182 (286)
Q Consensus       147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~-V~~~~r~~~  182 (286)
                      .+++|.|||-|..|..+|..+..+|++ |+.+.|...
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~   80 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF   80 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence            466899999999999999999998884 666666543

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=85.59  E-value=0.32  Score=39.22  Aligned_cols=34  Identities=29%  Similarity=0.321  Sum_probs=30.9

Q ss_pred             EEEEEcCChHHHHHHHHhccCCCEEEEECCCCCC
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      .|.|||.|..|...|..|+..|.+|+++++....
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            4899999999999999999999999999987653

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.55  E-value=0.29  Score=38.46  Aligned_cols=32  Identities=25%  Similarity=0.360  Sum_probs=28.9

Q ss_pred             EEEEEcCChHHHHHHHHhccCCCEEEEECCCC
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      -|.|||.|..|...|..+...|.+|.++++..
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            37899999999999999999999999998643

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=85.53  E-value=0.29  Score=38.48  Aligned_cols=38  Identities=26%  Similarity=0.502  Sum_probs=32.4

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      .+++||+|.|||.|.-|..+|..+...+.+++..-++.
T Consensus        28 ~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            46899999999999999999999998888776665554

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=85.40  E-value=0.37  Score=37.27  Aligned_cols=29  Identities=28%  Similarity=0.374  Sum_probs=23.8

Q ss_pred             EEEEEcCChHHHHHHHHhcc---CCCEEEEEC
Q 043239          150 RVGIVGLGSIGSEVAKRLVP---FGCSIAYTS  178 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~---~g~~V~~~~  178 (286)
                      +|||=|||+||+.+.|.+..   .+.+|+..+
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaIN   33 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIN   33 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEec
Confidence            79999999999999998864   346776654

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.96  E-value=0.71  Score=38.78  Aligned_cols=32  Identities=28%  Similarity=0.338  Sum_probs=27.0

Q ss_pred             CEEEEEc-CChHHHHHHHHhccCCCEEEEECCC
Q 043239          149 KRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRK  180 (286)
Q Consensus       149 ~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~  180 (286)
                      |.|.|.| .|-||+.+++.|...|++|.+.++.
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~   34 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNL   34 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECC
Confidence            4566665 7899999999999999999998753

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=84.88  E-value=0.11  Score=40.48  Aligned_cols=84  Identities=14%  Similarity=0.151  Sum_probs=55.1

Q ss_pred             CCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc---cc--CHHHhh--cCCCEEEEeccCChhh
Q 043239          147 GGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF---YA--NVSGLA--ADSDVLIVCCALTEET  213 (286)
Q Consensus       147 ~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~---~~--~l~e~l--~~aDiV~~~lp~~~~t  213 (286)
                      .+.+|.|.| .|.+|....+.++.+|++|++..+++++..     +...   +.  +..+.+  ...|.++-++.  .. 
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~vi~~~~~~~~~~l~~~~~~~vvD~Vg--g~-  107 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVG--DK-  107 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEEEEEGGGSSSCCSSCCCCEEEEEESSC--HH-
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccccccccccHHHHHHHHhhcCCeeEEEcc--hH-
Confidence            344676665 599999999999999999999888776532     2111   11  111111  22466766553  11 


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCC
Q 043239          214 HHMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       214 ~~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                         .-...++.|+++..+|+++.
T Consensus       108 ---~~~~~l~~l~~~Griv~~G~  127 (177)
T d1o89a2         108 ---VLAKVLAQMNYGGCVAACGL  127 (177)
T ss_dssp             ---HHHHHHHTEEEEEEEEECCC
T ss_pred             ---HHHHHHHHhccccceEeecc
Confidence               23567888999999999974

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=84.32  E-value=0.45  Score=35.97  Aligned_cols=31  Identities=26%  Similarity=0.270  Sum_probs=28.1

Q ss_pred             EEEEEcCChHHHHHHHHhccCCCEEEEECCC
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRK  180 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~  180 (286)
                      -|.|||.|..|...|..+..+|.+|++.++.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            3789999999999999999999999988864

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=84.32  E-value=0.24  Score=33.18  Aligned_cols=37  Identities=19%  Similarity=0.354  Sum_probs=31.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCC
Q 043239          147 GGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKP  183 (286)
Q Consensus       147 ~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~  183 (286)
                      .|.+|.|.|. |.+|....+.++.+|++|++..+++++
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k   68 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST   68 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHH
Confidence            5678888875 999999999999999999988877644

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.10  E-value=0.49  Score=37.35  Aligned_cols=33  Identities=24%  Similarity=0.194  Sum_probs=29.6

Q ss_pred             EEEEEcCChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      -|.|||.|..|.+.|..++.+|++|.+++....
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~   37 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTP   37 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            378999999999999999999999999986543

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=84.07  E-value=0.37  Score=37.14  Aligned_cols=31  Identities=29%  Similarity=0.355  Sum_probs=25.4

Q ss_pred             CEEEEEcCChHHHHHHHHhccC-CCEEEEECC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF-GCSIAYTSR  179 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~-g~~V~~~~r  179 (286)
                      .+|||=|+|+||+.+.|.+... .++|...+-
T Consensus         2 ikigINGFGRIGR~v~R~~~~~~~i~ivaINd   33 (166)
T d1gado1           2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND   33 (166)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             eEEEEECCcHHHHHHHHHHhhCCCeEEEEEeC
Confidence            4799999999999999988765 467776654

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=83.90  E-value=0.5  Score=37.80  Aligned_cols=37  Identities=16%  Similarity=0.252  Sum_probs=30.8

Q ss_pred             CCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCC
Q 043239          148 GKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPG  184 (286)
Q Consensus       148 g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~  184 (286)
                      +.+|.|.| .|.||.++|+.|.+.|++|+..+|+....
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~   39 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQ   39 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhc
Confidence            34677776 57899999999999999999999887653

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=83.72  E-value=0.38  Score=37.30  Aligned_cols=31  Identities=26%  Similarity=0.313  Sum_probs=23.8

Q ss_pred             CEEEEEcCChHHHHHHHHhccC----CCEEEEECC
Q 043239          149 KRVGIVGLGSIGSEVAKRLVPF----GCSIAYTSR  179 (286)
Q Consensus       149 ~~vgIiG~G~iG~~~A~~l~~~----g~~V~~~~r  179 (286)
                      .+|||=|+|+||+.+.|.+...    ..+|...+-
T Consensus         2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd   36 (173)
T d1obfo1           2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIND   36 (173)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEEC
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcC
Confidence            4899999999999999987642    346665553

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=83.38  E-value=0.36  Score=37.90  Aligned_cols=31  Identities=23%  Similarity=0.220  Sum_probs=28.6

Q ss_pred             EEEEEcCChHHHHHHHHhccCCCEEEEECCC
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRK  180 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~  180 (286)
                      .+.|||.|..|...|..++.+|.+|.+.++.
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            4899999999999999999999999998764

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.33  E-value=0.078  Score=41.55  Aligned_cols=83  Identities=19%  Similarity=0.305  Sum_probs=55.2

Q ss_pred             CCEEEEEc-CChHHHHHHHHhccCCCE-EEEECCCCCCC------CCcc-----cccCHHHhhcC-----CCEEEEeccC
Q 043239          148 GKRVGIVG-LGSIGSEVAKRLVPFGCS-IAYTSRKKKPG------VSYP-----FYANVSGLAAD-----SDVLIVCCAL  209 (286)
Q Consensus       148 g~~vgIiG-~G~iG~~~A~~l~~~g~~-V~~~~r~~~~~------~~~~-----~~~~l~e~l~~-----aDiV~~~lp~  209 (286)
                      +++|.|.| .|.+|...++.++.+|++ |.+.+.+.++.      .+..     ...++.+.+++     .|+|+-++. 
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG-  109 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG-  109 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC-
Confidence            46899999 599999999999999985 55555443321      1211     12345544433     899988774 


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 043239          210 TEETHHMINKDVMTALGKEGVIINVGR  236 (286)
Q Consensus       210 ~~~t~~~i~~~~l~~mk~g~ilvn~sr  236 (286)
                       .+    ..+..++.++++..++.++.
T Consensus       110 -g~----~~~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2         110 -GD----ISNTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             -HH----HHHHHHTTEEEEEEEEEC--
T ss_pred             -ch----hHHHHhhhccccccEEEecc
Confidence             11    12567888999999999874

>d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Formyl-CoA transferase
species: Oxalobacter formigenes [TaxId: 847]

Probab=82.97  E-value=0.98  Score=39.30  Aligned_cols=91  Identities=11%  Similarity=0.080  Sum_probs=67.0

Q ss_pred             cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCC---------CCC------------cc-c---------ccCH
Q 043239          145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP---------GVS------------YP-F---------YANV  193 (286)
Q Consensus       145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~---------~~~------------~~-~---------~~~l  193 (286)
                      .|.|.+|.=++-...|-..++.|..+|.+|+-+.+....         ...            .+ .         ..-+
T Consensus         3 PL~GirVld~~~~~agp~~~~~LadlGAeVIkvE~p~~gd~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~~~~   82 (427)
T d2vjma1           3 PLDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTMFNCNKRSIELDMKTPEGKELL   82 (427)
T ss_dssp             TTTTCEEEECCCTTHHHHHHHHHHHTTCEEEEEECTTTCSGGGGSSCSSTTSCCHHHHTTCSSCEEEECCTTSHHHHHHH
T ss_pred             CCCCCEEEEcCChhHHHHHHHHHHHhCCeEEEECCCCCCCcccccCCCCCCCccHHHHHhCCCCeEEEEeCcCHHHHHHH
Confidence            488999998998888999999999999999877743210         000            00 0         0236


Q ss_pred             HHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcC
Q 043239          194 SGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       194 ~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      .+++++||||+-..+...--+-=++.+.+...+|.-|++.++
T Consensus        83 ~~Lv~~aDv~i~n~~pg~~~rlGL~~~~l~~~NP~LI~~sis  124 (427)
T d2vjma1          83 EQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASVK  124 (427)
T ss_dssp             HHHHHHCSEEEECCSTTHHHHTTCCHHHHHHHCTTCEEEEEE
T ss_pred             HHHHHhCCeeeECCCcchHHHcCCCchhhhhhCCccceeeee
Confidence            678999999998876444344446888999999999999984

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=82.78  E-value=0.46  Score=37.56  Aligned_cols=32  Identities=28%  Similarity=0.243  Sum_probs=29.1

Q ss_pred             EEEEEcCChHHHHHHHHhccCCCEEEEECCCC
Q 043239          150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKK  181 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~  181 (286)
                      -|.|||.|..|.+.|..++.+|.+|+++++..
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            37899999999999999999999999997654

>d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Hypothetical protein YfdW
species: Escherichia coli [TaxId: 562]

Probab=82.35  E-value=0.97  Score=39.22  Aligned_cols=92  Identities=13%  Similarity=0.059  Sum_probs=64.2

Q ss_pred             ccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCC--CC-------CC------------Ccc----------cccC
Q 043239          144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKK--KP-------GV------------SYP----------FYAN  192 (286)
Q Consensus       144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~--~~-------~~------------~~~----------~~~~  192 (286)
                      ..|.|-+|.=++-...|-..++.|..+|.+|+-+.+..  ..       ..            +.+          ..+-
T Consensus         3 ~PL~GirVld~~~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~~~   82 (417)
T d1q7ea_           3 TPLQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYFTMLNSNKRSIELNTKTAEGKEV   82 (417)
T ss_dssp             CTTTTCEEEECCCTTHHHHHHHHHHHTTCEEEEEECTTTCCGGGTTTCSSTTSCCHHHHTTCTTCEEEECCTTSHHHHHH
T ss_pred             CCCCCCEEEEcCChhHHHHHHHHHHHhCCeEEEECCCCCCCchhccCCCCCCCccHHHHHhCCCCeEEEEeCcCHHHHHH
Confidence            45899999999999999999999999999998776422  11       00            000          0123


Q ss_pred             HHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcC
Q 043239          193 VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVG  235 (286)
Q Consensus       193 l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~s  235 (286)
                      +.+++++||||+-..+...--+-=++.+.+...+|+-+++.++
T Consensus        83 ~~~Li~~aDv~i~n~~pg~~~rlGl~~~~l~~~nP~lI~~sis  125 (417)
T d1q7ea_          83 MEKLIREADILVENFHPGAIDHMGFTWEHIQEINPRLIFGSIK  125 (417)
T ss_dssp             HHHHHHHCSEEEECCCC-------CCHHHHHHHCTTCEEEEEE
T ss_pred             HHHHHhcCcccEeccCCCcHhhcCCCHHHHHhhCCCEEEEeee
Confidence            5579999999998876443333336788899999999999984

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.70  E-value=0.51  Score=35.26  Aligned_cols=29  Identities=38%  Similarity=0.478  Sum_probs=26.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHhccCCCEE
Q 043239          146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSI  174 (286)
Q Consensus       146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V  174 (286)
                      -.|++|.|||.|.+|..+|..+...|.++
T Consensus        27 ~~gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          27 PVGNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             ccCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            45899999999999999999999999753

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=81.69  E-value=0.53  Score=38.47  Aligned_cols=35  Identities=23%  Similarity=0.258  Sum_probs=30.1

Q ss_pred             CCEEEEEcCChHHHHHHHHhcc-CCCEEEEECCCCC
Q 043239          148 GKRVGIVGLGSIGSEVAKRLVP-FGCSIAYTSRKKK  182 (286)
Q Consensus       148 g~~vgIiG~G~iG~~~A~~l~~-~g~~V~~~~r~~~  182 (286)
                      ..-|.|||.|.-|...|..|.. .|++|+++++.+.
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            3469999999999999999865 6999999997653

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.49  E-value=0.54  Score=36.65  Aligned_cols=30  Identities=27%  Similarity=0.323  Sum_probs=27.6

Q ss_pred             EEEEcCChHHHHHHHHhccCCCEEEEECCC
Q 043239          151 VGIVGLGSIGSEVAKRLVPFGCSIAYTSRK  180 (286)
Q Consensus       151 vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~  180 (286)
                      +.|||.|..|.+.|..++.+|.+|.+.++.
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999998753

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.79  E-value=0.66  Score=38.74  Aligned_cols=34  Identities=29%  Similarity=0.346  Sum_probs=28.5

Q ss_pred             CEE-EEEc-CChHHHHHHHHhccCCCEEEEECCCCC
Q 043239          149 KRV-GIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKK  182 (286)
Q Consensus       149 ~~v-gIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~  182 (286)
                      |+| .|.| .|-||+.+++.|...|++|++.+|...
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~   36 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS   36 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            467 4665 789999999999999999999988543

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=80.64  E-value=0.86  Score=37.44  Aligned_cols=58  Identities=21%  Similarity=0.193  Sum_probs=40.1

Q ss_pred             CCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhc--CCCEEEEec
Q 043239          148 GKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAA--DSDVLIVCC  207 (286)
Q Consensus       148 g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~--~aDiV~~~l  207 (286)
                      .|+|.|.| .|.+|+.+++.|...|..|++.+...+..  ......++++++  ..|+|+.+.
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~~~--~~~~~~~~~~~~~~~~d~v~~~a   62 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELN--LLDSRAVHDFFASERIDQVYLAA   62 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCC--TTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchhcc--ccCHHHHHHHHhhcCCCEEEEcc
Confidence            46899997 79999999999999999888776543321  112234445543  368887664

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.50  E-value=0.61  Score=36.18  Aligned_cols=30  Identities=23%  Similarity=0.309  Sum_probs=27.7

Q ss_pred             EEEEcCChHHHHHHHHhccCCCEEEEECCC
Q 043239          151 VGIVGLGSIGSEVAKRLVPFGCSIAYTSRK  180 (286)
Q Consensus       151 vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~  180 (286)
                      +.|||.|..|.+.|..++..|.+|.++++.
T Consensus         6 viVIG~GpaGl~aA~~aar~G~kV~vIEk~   35 (223)
T d1ebda1           6 TLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (223)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecC
Confidence            789999999999999999999999998764

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.10  E-value=0.45  Score=36.45  Aligned_cols=20  Identities=30%  Similarity=0.672  Sum_probs=18.5

Q ss_pred             EEEEEcCChHHHHHHHHhcc
Q 043239          150 RVGIVGLGSIGSEVAKRLVP  169 (286)
Q Consensus       150 ~vgIiG~G~iG~~~A~~l~~  169 (286)
                      +|+|+|+|.+|+.+++.+..
T Consensus         6 ~I~l~G~G~VG~~l~~~l~~   25 (168)
T d1ebfa1           6 NVAVIGAGVVGSAFLDQLLA   25 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHH
Confidence            79999999999999998875

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.04  E-value=0.71  Score=38.66  Aligned_cols=33  Identities=24%  Similarity=0.219  Sum_probs=28.9

Q ss_pred             CCEEEEEc-CChHHHHHHHHhccCCCEEEEECCC
Q 043239          148 GKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRK  180 (286)
Q Consensus       148 g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~  180 (286)
                      -|+|.|.| .|-||+.+++.|.+.|++|.+.|+.
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~   49 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNF   49 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            35788886 7999999999999999999998863