Citrus Sinensis ID: 043255
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1843 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FGI1 | 1873 | E3 ubiquitin-protein liga | yes | no | 0.969 | 0.953 | 0.530 | 0.0 | |
| E1C231 | 1766 | E3 ubiquitin-protein liga | yes | no | 0.112 | 0.117 | 0.413 | 5e-48 | |
| A0JM49 | 1696 | E3 ubiquitin-protein liga | yes | no | 0.130 | 0.141 | 0.388 | 2e-47 | |
| Q6A009 | 1767 | E3 ubiquitin-protein liga | yes | no | 0.113 | 0.118 | 0.414 | 6e-47 | |
| O94822 | 1766 | E3 ubiquitin-protein liga | yes | no | 0.113 | 0.118 | 0.414 | 8e-47 | |
| Q555H8 | 1864 | E3 ubiquitin-protein liga | yes | no | 0.102 | 0.100 | 0.418 | 2e-41 | |
| O74349 | 1610 | E3 ubiquitin-protein liga | yes | no | 0.111 | 0.127 | 0.387 | 7e-41 | |
| Q04781 | 1562 | E3 ubiquitin-protein liga | yes | no | 0.100 | 0.118 | 0.371 | 3e-38 | |
| Q65XX2 | 1446 | E3 ubiquitin-protein liga | yes | no | 0.117 | 0.150 | 0.363 | 5e-38 | |
| Q9VW09 | 1747 | E3 ubiquitin-protein liga | yes | no | 0.111 | 0.117 | 0.420 | 6e-38 |
| >sp|Q9FGI1|LTN1_ARATH E3 ubiquitin-protein ligase listerin OS=Arabidopsis thaliana GN=At5g58410 PE=3 SV=1 | Back alignment and function desciption |
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Score = 1880 bits (4871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 992/1869 (53%), Positives = 1320/1869 (70%), Gaps = 83/1869 (4%)
Query: 3 DIDSEVAQHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSR 62
D+DSEVAQHL+RL+RKDP TK+KAL+SLS L+K+K GK++ PIIPQW FEYK+L+LDYSR
Sbjct: 58 DLDSEVAQHLQRLSRKDPTTKIKALASLSELVKQKQGKELLPIIPQWTFEYKKLILDYSR 117
Query: 63 EVRRATHEMMTSLVITVGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQ-------- 114
+VRRATH++MT++V GRD+APHLKS+MGPWWFSQFD SEVSQAAK S Q
Sbjct: 118 DVRRATHDVMTNVVTGAGRDIAPHLKSIMGPWWFSQFDLASEVSQAAKSSFQVGSSFGNS 177
Query: 115 -----AAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVISS 169
AAFPAQEKRL AL +C+ E+F YLEENLKLTPQNLSDK++A DELEEM+QQ+ISS
Sbjct: 178 VFLVEAAFPAQEKRLHALNLCSAEIFAYLEENLKLTPQNLSDKSLASDELEEMYQQMISS 237
Query: 170 SLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQ 229
SL+ LATLLD+L+ E G NI +E K ASKARA+A S +EK+FS HK FL+FLKS+
Sbjct: 238 SLVGLATLLDILLREP-DNTGSANINSESKLASKARAVATSSAEKMFSSHKCFLNFLKSE 296
Query: 230 SVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKR 289
S SIRSATYS+L S+IKN+P VF EG+++ +A A+LG F+E +P CHSSMW+A+LL SK+
Sbjct: 297 SPSIRSATYSLLSSFIKNVPEVFGEGDVRSLAPALLGVFRENNPTCHSSMWEAVLLFSKK 356
Query: 290 FPDCWTVLNAQKTILNRFWHFLKNGCFGSQQVSYPALVLFLDVVPPKAVAADKFFQDFFN 349
FP W LN K++LN W FL+NGC+GS QVSYPAL+LFL+V+P ++V +DKFF +FF
Sbjct: 357 FPQSWVYLNVHKSVLNHLWQFLRNGCYGSPQVSYPALILFLEVMPAQSVESDKFFVNFFK 416
Query: 350 SLWAGRNEPHSSNSDHKAFFRAFKECFLWGLLNASRYFDGVDSIFHFRVALVDDILLKLL 409
+L AGR+ SS++D + RA ECFLWGL NASRY D +SI +V L+D +L+K+L
Sbjct: 417 NLLAGRSMCESSSTDQLSLLRATTECFLWGLRNASRYCDVPNSIHDLQVDLIDKVLVKIL 476
Query: 410 WQDYLFFGCSKGQNSQVSRMSKNPPEDGNLPSNVKKS-DTLNMKYPKSYFQELGKCIVEI 468
W D+ + +SK G++P N +KS + L M SY QELG+CI+EI
Sbjct: 477 WADF-------------TELSK-----GSIPPNQRKSAENLGMGNSVSYLQELGRCILEI 518
Query: 469 LSGIYLLEHDLLSSFCTTFHETCLQVVQQKE-NLGLFSEEQIIKFLSLLEQHAIQKGEDW 527
LSGI LLE +LLS FC E+ L ++QQ + + S ++I FL LLE++++ +GE W
Sbjct: 519 LSGINLLEQNLLSFFCKAVQESFLNMLQQGDLEIVAGSMRKMIDFLLLLERYSVLEGESW 578
Query: 528 PLVYLVGPMLAKAFPMIKSLDSVNGIRLLSVSISVFGPRKIVREL--------FITDDGD 579
PL +GP+L+KAFP I+S + ++G++LLSVS+SVFGPRK+V L ++ + +
Sbjct: 579 PLHQFMGPLLSKAFPWIRSSELLDGVKLLSVSVSVFGPRKVVPVLIDDIETSTLLSVEKE 638
Query: 580 QMVDSGSFLQVFKETFVPWCLDGYNHSMSSRLDLLLTLLDEECFLDQWCAVMSYAANVKH 639
+ + ++VF+E F+PWC+DGY+ S ++R DLL +LLD+ECF QW V+SY N +H
Sbjct: 639 KNMSPEKLIKVFQEIFIPWCMDGYDSSTAARQDLLFSLLDDECFTQQWSDVISYVFNQQH 698
Query: 640 SGVEPGSLEPSHVLVLAMLLEKLRDKITKPKVGEHSTNWQGSHLDHLHHELLDSIAVAVA 699
G +++ + MLLEK RD+ITK G+ GS +H HH L++S A+++
Sbjct: 699 QGF-------NNLAAMKMLLEKARDEITKRSSGQELNQRIGSRPEHWHHTLIESTAISLV 751
Query: 700 CSFPPFGTSDARLMRALLGGSTEGNQVSFVSTNILIMIFKELLKKLVPFLGESSFTWVRD 759
S TS + + ++LGGST+ + +SFVS + L++I++ +L+KL+ F+ +S V D
Sbjct: 752 HSSSATTTSAVQFLCSVLGGSTQDSSISFVSRSSLVLIYRGILEKLLSFIKQSPLCSVND 811
Query: 760 ASSLLTSEAKDFRFEIGKSVNVIEMAQFALDILDGSFFCLKRIDDESSLLSSISAALFII 819
S L EA F+ SV+VI +A+FA +++DGSFF LK + +++LL+++ +++FII
Sbjct: 812 TCSSLIVEA--IAFDSSSSVDVIVVAKFAAEVIDGSFFSLKSLSQDATLLTTVLSSIFII 869
Query: 820 DWEYSMATVLDDTLDDESMKKINARLNVCKSVHVFRSKINNGFWRSLNIDNRKKLWSILI 879
D E M +++D+TL ES +K R VC VH SK++N FW+S+N D RK S L
Sbjct: 870 DLENRMTSLVDNTLS-ESKEKRKDRNFVCDYVHAVCSKMDNQFWKSINYDVRKSSASTLA 928
Query: 880 RSVTNAIFKEHNMKSDKLVSLCYSWMVEILEYLSQNPYEEQNLLDQLLSGDATWPLWINP 939
+ + + + E +++ +L LC S M E+LEYLS + +E+N+ LL WP+W++P
Sbjct: 929 QFLRSVVLLEDDLQPFELTLLCASRMTEVLEYLSLDQSDEENICGLLLLESDAWPIWVSP 988
Query: 940 NLSTPKESDALNTPNESLNIHVSGHHRFVSLIDKIISKAGLQKVVAGHVTHACPSPPEET 999
S+ D P + + S R+VS ID +I K G+ + + GH H
Sbjct: 989 --SSSASIDTHGMPVQLCELRKSKSQRYVSFIDSLIMKLGIHRFIVGHKDHG-------- 1038
Query: 1000 INEVPSRAWLAAEVLCTWKWPGGNALDSFLPLLCSHAKSRNLASQQNLLDSIFDILLDGA 1059
S+AWL+ E+LCTW+WPGG SFLP L S K S LL+SIFDILL+GA
Sbjct: 1039 ---FASQAWLSVEILCTWEWPGGKVQTSFLPNLVSFCKDE--PSSGGLLNSIFDILLNGA 1093
Query: 1060 LVHGGNSSQSLFDIWPPLDDKVELIEEHFLRALVSLLVTLLKNDIWERDKAMILFDLLVN 1119
LVH + + L ++W ++ + + E FLRALVS L L K D+W ++AM F ++ +
Sbjct: 1094 LVHVKDEEEGLGNMWVDFNNNIVDVVEPFLRALVSFLHILFKEDLWGEEEAMAAFKMITD 1153
Query: 1120 KLFVGEAINKNCLRILPPIITVLVRTLSYRSVGSNEYGRGVDSDTSEGNQVQDTIRGWLQ 1179
KLF+GE +KNCLRI+P I+++++ L + V S G+ DT +V +R WL+
Sbjct: 1154 KLFIGEETSKNCLRIIPYIMSIIISPLRTK-VKSGGSGK----DTLLPLEV--LLRNWLE 1206
Query: 1180 RTLLFPPLVTWQSGEDMEEWFQLVISCYPLSATGGAELFKLERNISHDERTLLLDLFRKQ 1239
R+L FPPLV WQSGED+++WFQLVISCYP+S E +L+R++S +ERTLLLDLFRKQ
Sbjct: 1207 RSLSFPPLVLWQSGEDIQDWFQLVISCYPVS-DKAEEAKELQRHLSTEERTLLLDLFRKQ 1265
Query: 1240 RHGGG---IANQLPVVQVLLSQLMVISVGYCWKEFNEDDWSFVFSNLSSWIQSAVVIMEE 1296
+ G + QLP VQ+LL++L++I+V YC +FNEDDW FVFSNL IQSAVV+MEE
Sbjct: 1266 KQDPGASTVVTQLPAVQILLARLIMIAVSYCGNDFNEDDWDFVFSNLKRLIQSAVVVMEE 1325
Query: 1297 AAENVNDAIADSSS--SNNLDDIIEKLEKIVFISDPSPINNARNAILSFSLCHNILLCHG 1354
+ENVND I+ SS +D +E L IVFISDPS IN+A+NA+ +FSL + ++
Sbjct: 1326 TSENVNDFISGVSSMEKEKENDTLEGLGHIVFISDPS-INSAQNALSAFSLLNALVNHKS 1384
Query: 1355 AEDSDNSNPLRTERWDRVRNRIAEGILRLFFCTGICEAIASSYGLESALVIASSRLDHIC 1414
E DN L E WD V++RI EG+LRLFFCTG+ EAIA+SY E+A ++AS R+DH+
Sbjct: 1385 VEGEDNLKSLADETWDPVKDRILEGVLRLFFCTGLTEAIAASYSPEAASIVASFRVDHLQ 1444
Query: 1415 FWELVASSVVNSSPHVKDRAVKSVEFWGLRKGPISALYAILFSSKPIAPLQYAAFVVLSA 1474
FWELVA VV+SSP +DRAV++VEFWGL +G IS+LYAI+FSS PI LQ AA+ VLS
Sbjct: 1445 FWELVAHLVVDSSPRARDRAVRAVEFWGLSRGSISSLYAIMFSSNPIPSLQLAAYTVLST 1504
Query: 1475 DPVSQLAIFREDSVSSLGADSGVDQDMNCLDLSSEN-VHLQGEISCMIEKLPFQVVEMDL 1533
+P+S+LAI D + L +S DQD + L SE+ + L+ E+SCM+EKL ++++ DL
Sbjct: 1505 EPISRLAIV-ADLNAPLNDESLNDQDSSNAGLPSEDKLLLRDEVSCMVEKLDHELLDTDL 1563
Query: 1534 TAQEWVNVFLAWSLLLSHLSSLPSLTSQRERLVQYILDSANTVILDCIFQHIPLELCEMQ 1593
TA E V FLAWSLLLS+++SLPSLT RERLVQYI +AN +ILD +FQHIPLEL Q
Sbjct: 1564 TAPERVQTFLAWSLLLSNVNSLPSLTQGRERLVQYIEKTANPLILDSLFQHIPLELYMGQ 1623
Query: 1594 DLKKKDGDLPAEVSAAATAAKHAITTGSLLFPVESLWPVDPVKLASLAGAIYGLMLCVLP 1653
LKKKDGD+P+E+S A+AA AI TGS L VESLWP++ K+ASLAGAIYGLML VLP
Sbjct: 1624 SLKKKDGDIPSELSVVASAATRAIITGSSLSTVESLWPIETGKMASLAGAIYGLMLRVLP 1683
Query: 1654 AYVRGWFSDLRDRSISSLVESFTRVWCSPPLIANELSQIKKANIADENFSLTVSKSANEV 1713
AYVR WFS++RDRS SSL+E+FTR WCSP LI NELSQIKKA+ DE+FS+++SK+ANEV
Sbjct: 1684 AYVREWFSEMRDRSASSLIEAFTRTWCSPSLIKNELSQIKKADFNDESFSVSISKAANEV 1743
Query: 1714 VATYTKDETKMDLIIRLPASYPLRPVDVECMRSLGISEVKQRKWLMSMMLFVRNQNGALA 1773
VATYTKDET MDL+IRLP SYPL+PVDV C +S+GISE KQRKWLMSM +FVR+QNGALA
Sbjct: 1744 VATYTKDETGMDLVIRLPVSYPLKPVDVNCAKSIGISEAKQRKWLMSMQMFVRHQNGALA 1803
Query: 1774 EAIRIWKRNFDKEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHK 1833
EAIRIWKRN DKEFEGVE+CPICYSVIH NHSLPR AC TCK+KFH ACL KWF TS+K
Sbjct: 1804 EAIRIWKRNSDKEFEGVEDCPICYSVIHIGNHSLPRRACVTCKYKFHKACLDKWFYTSNK 1863
Query: 1834 SSCPLCQSP 1842
CPLCQSP
Sbjct: 1864 KLCPLCQSP 1872
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E3 ubiquitin-protein ligase. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer the ubiquitin to targeted substrates. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|E1C231|LTN1_CHICK E3 ubiquitin-protein ligase listerin OS=Gallus gallus GN=LTN1 PE=3 SV=1 | Back alignment and function description |
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| >sp|A0JM49|LTN1_XENTR E3 ubiquitin-protein ligase listerin OS=Xenopus tropicalis GN=ltn1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6A009|LTN1_MOUSE E3 ubiquitin-protein ligase listerin OS=Mus musculus GN=Ltn1 PE=1 SV=3 | Back alignment and function description |
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| >sp|O94822|LTN1_HUMAN E3 ubiquitin-protein ligase listerin OS=Homo sapiens GN=LTN1 PE=1 SV=6 | Back alignment and function description |
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| >sp|Q555H8|LTN1_DICDI E3 ubiquitin-protein ligase listerin OS=Dictyostelium discoideum GN=rnf160 PE=3 SV=1 | Back alignment and function description |
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| >sp|O74349|LTN1_SCHPO E3 ubiquitin-protein ligase listerin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC21D10.09c PE=3 SV=1 | Back alignment and function description |
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| >sp|Q04781|LTN1_YEAST E3 ubiquitin-protein ligase listerin OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RKR1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q65XX2|LTN1_CAEEL E3 ubiquitin-protein ligase listerin OS=Caenorhabditis elegans GN=Y54E10A.11 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9VW09|LTN1_DROME E3 ubiquitin-protein ligase listerin OS=Drosophila melanogaster GN=l(3)76BDr PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1843 | ||||||
| 359478506 | 1923 | PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu | 0.994 | 0.953 | 0.618 | 0.0 | |
| 255553403 | 1912 | conserved hypothetical protein [Ricinus | 0.997 | 0.961 | 0.634 | 0.0 | |
| 356499002 | 1885 | PREDICTED: E3 ubiquitin-protein ligase l | 0.981 | 0.959 | 0.594 | 0.0 | |
| 449455120 | 1919 | PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu | 0.989 | 0.950 | 0.585 | 0.0 | |
| 297793377 | 1871 | binding protein [Arabidopsis lyrata subs | 0.968 | 0.954 | 0.534 | 0.0 | |
| 15237191 | 1873 | HEAT/U-box domain-containing protein [Ar | 0.969 | 0.953 | 0.530 | 0.0 | |
| 357491343 | 1683 | RING finger protein [Medicago truncatula | 0.903 | 0.989 | 0.571 | 0.0 | |
| 355430071 | 1899 | hypothetical protein [Linum usitatissimu | 0.948 | 0.920 | 0.531 | 0.0 | |
| 449474466 | 1660 | PREDICTED: E3 ubiquitin-protein ligase l | 0.890 | 0.988 | 0.568 | 0.0 | |
| 449506315 | 1755 | PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu | 0.886 | 0.931 | 0.547 | 0.0 |
| >gi|359478506|ref|XP_003632124.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase listerin-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2342 bits (6070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1158/1872 (61%), Positives = 1446/1872 (77%), Gaps = 39/1872 (2%)
Query: 3 DIDSEVAQHLKRLARKDPITKLKALSSLSALLKEKSGKDIAPIIPQWAFEYKRLLLDYSR 62
DIDSE+AQHLKRLARKDP TKLKAL+ LS LLK+KSGK+I IIPQWAFEYK+LL+DY+R
Sbjct: 60 DIDSEMAQHLKRLARKDPTTKLKALTCLSMLLKQKSGKEIVLIIPQWAFEYKKLLMDYNR 119
Query: 63 EVRRATHEMMTSLVITVGRDLAPHLKSLMGPWWFSQFDSNSEVSQAAKRSLQ-------- 114
EVRRATH+ MT+LV+ VGRDLA HLKSLMGPWWFSQFD EV+Q AK SLQ
Sbjct: 120 EVRRATHDTMTNLVLAVGRDLALHLKSLMGPWWFSQFDQIPEVAQGAKHSLQVFSSFLTT 179
Query: 115 -----AAFPAQEKRLDALLICATEVFIYLEENLKLTPQNLSDKAIALDELEEMHQQVISS 169
AAFPA EKRLDAL++C TE+F+YL+ENLKLTPQ++SDK ALDELEEMHQQVISS
Sbjct: 180 XSLIXAAFPAPEKRLDALILCTTEIFMYLDENLKLTPQSMSDKVTALDELEEMHQQVISS 239
Query: 170 SLLALATLLDVLVCEHFGRPGFENITAEPKHASKARAIAVSFSEKLFSDHKYFLDFLKSQ 229
SLLALATL+D+LV +PGFE+ITAEPKHASKARA A+SF+EKLFS H+YFLDF+KSQ
Sbjct: 240 SLLALATLIDILVGSQLEKPGFESITAEPKHASKARATAISFAEKLFSSHRYFLDFVKSQ 299
Query: 230 SVSIRSATYSVLKSYIKNIPHVFNEGNLKIIATAILGAFQEKDPVCHSSMWDAILLLSKR 289
S +IRSATYS+L+S IKNIPH FNE N+K +A+ ILG+FQEKDP CHSSMWDA+LL SKR
Sbjct: 300 SPAIRSATYSMLRSCIKNIPHAFNEENMKTLASTILGSFQEKDPSCHSSMWDAMLLFSKR 359
Query: 290 FPDCWTVLNAQKTILNRFWHFLKNGCFGSQQVSYPALVLFLDVVPPKAVAADKFFQDFFN 349
FPD W +N QK +LNRFWHFL+NGCFGSQQ+SYP+LVLFLD +PPK + +KFF +FF
Sbjct: 360 FPDSWRSVNVQKILLNRFWHFLRNGCFGSQQISYPSLVLFLDSLPPKEIEGEKFFLEFFQ 419
Query: 350 SLWAGRNEPHSSNSDHKAFFRAFKECFLWGLLNASRYFDGVDSIFHFRVALVDDILLKLL 409
+LW GRN + SN+D AFF+AFKECFLWGL NASRY +GVD+I HFRV L+D +L+KL
Sbjct: 420 NLWVGRNPSNPSNADRVAFFQAFKECFLWGLHNASRYCNGVDAIHHFRVTLIDSVLVKLF 479
Query: 410 WQDYLFFGCSKGQNSQVSRMSKNPPEDGNLPSNVKKSDTLNMKYPKSYFQELGKCIVEIL 469
W +Y+ F SK Q+ SK+P E + + + N+KYPKSY Q+LGKCI+EIL
Sbjct: 480 WHEYMSFSSSKNQDVVRWGNSKDPSESSTQLVHKRAMEKQNIKYPKSYAQDLGKCIIEIL 539
Query: 470 SGIYLLEHDLLSSFCTTFHETCLQVVQQKENLGLFSE-EQIIKFLSLLEQHAIQKGEDWP 528
SGIYLL+HDLLS+FC+TF E CL++V+Q EN EQI+KFL L+EQ+A+ K E WP
Sbjct: 540 SGIYLLDHDLLSAFCSTFQENCLEIVKQTENREKSENVEQIVKFLLLVEQYAVLKDETWP 599
Query: 529 LVYLVGPMLAKAFPMIKSLDSVNGIRLLSVSISVFGPRKIVRELF---------ITDDGD 579
L++LVGPML+K+FP+I+SL S + +RL SV++SVFGPRKI++EL ++ DG
Sbjct: 600 LIHLVGPMLSKSFPLIRSLASPDAVRLFSVAVSVFGPRKIIQELICNKALSFGHLSHDGG 659
Query: 580 QMVDSGSFLQVFKETFVPWCLDGYNHSMSSRLDLLLTLLDEECFLDQWCAVMSYAANVKH 639
+ + FLQVFKE F PWCL G++ S+S++LDLLL L ++E F +QWC V++YA ++
Sbjct: 660 EKLGQEDFLQVFKELFTPWCLLGHDSSISAQLDLLLALFEDESFAEQWCMVITYATKLEC 719
Query: 640 SGVEPGSLEPSHVLVLAMLLEKLRDKITKPKVGEHSTNWQGSHLDHLHHELLDSIAVAVA 699
G +PGSL+ + + VLA+L+EK R+K+ K KVG + QG DH HHELLD AV+VA
Sbjct: 720 CGAKPGSLDSNQIAVLAILMEKAREKLKKRKVGVDFNHHQGCQPDHWHHELLDLAAVSVA 779
Query: 700 CSFPPFGTSDARLMRALLGGSTEGNQVSFVSTNILIMIFKELLKKLVPFLGESSFTWVRD 759
CS PP+GTSD+R +RA+LGGS E +Q SF+S + +I+IF+++LKKL+ F+ SSF WV+D
Sbjct: 780 CSLPPYGTSDSRFIRAVLGGSVEDDQASFLSRDAMILIFEDVLKKLLTFIMTSSFIWVKD 839
Query: 760 ASSLLTSEAKDFRFEIGKSVNVIEMAQFALDILDGSFFCLKRIDDESSLLSSISAALFII 819
A SLL A D E+ SVN++E QFAL+ILDGSFFCL+ + S ++ +SAALFII
Sbjct: 840 AGSLLAPTAVDSMTELESSVNMLEATQFALEILDGSFFCLQTFCEGSEVVPCLSAALFII 899
Query: 820 DWEYSMATVLDDTLDDESMKKINARLNVCKSVHVFRSKINNGFWRSLNIDNRKKLWSILI 879
WE +MA LD+ DD+SM+ AR+N +++ R KIN FW+SL+I N+KKL SILI
Sbjct: 900 GWECNMARALDNAFDDQSMEITKARMNFGEALLSLRGKINKTFWQSLSIPNQKKLGSILI 959
Query: 880 RSVTNAIFKEHNMKSDKLVSLCYSWMVEILEYLSQNPYEEQNLLDQLLSGDATWPLWINP 939
++ +AIFKE + ++++ SLC+ WM E+LE L Q+ Y+EQN LD L+ WPLWI P
Sbjct: 960 LTIRSAIFKEDKVNANEITSLCFLWMAEVLECLCQDQYQEQNFLDLFLANSDVWPLWIMP 1019
Query: 940 NLSTPKESDALNTPNESLNIHVSGHHRFVSLIDKIISKAGLQKVVAGHVTHACPSPPEET 999
+ K S +L S+ + SG H+FV++I+K+IS G+ +VVAG+V++ P+ EE
Sbjct: 1020 DSGCAKRSASLKIKEISIKTNTSGSHKFVAIIEKLISALGIDRVVAGYVSNT-PNSTEEA 1078
Query: 1000 INEVP-----SRAWLAAEVLCTWKWPGGNALDSFLPLLCSHAKSRNLASQQNLLDSIFDI 1054
E+ SRAWLAAE+LCTWKW GG+AL SFLPLLCS+AKS N + ++ LLDSI +I
Sbjct: 1079 SKELATSHFYSRAWLAAEILCTWKWQGGSALGSFLPLLCSYAKSGNCSLKEGLLDSIVNI 1138
Query: 1055 LLDGALVHGGNSSQSLFDIWPPLDDKVELIEEHFLRALVSLLVTLLKNDIWERDKAMILF 1114
LLDGALV+G + F++W DD+VE IEE FLRALVS L+TL +IW +D+A+ILF
Sbjct: 1139 LLDGALVYGASGELRFFNVWSASDDEVESIEEPFLRALVSFLITLFTENIWGKDQAVILF 1198
Query: 1115 DLLVNKLFVGEAINKNCLRILPPIITVLVRTLSYRSVGSNEYGRGVDSDTSEGNQVQDTI 1174
LL NKLF+GE++N CLRI P I++VL+R L ++ S+E R + E NQ+ DTI
Sbjct: 1199 GLLANKLFIGESVNAECLRIFPLILSVLIRPL--YTIESDELHRDAVPTSFEENQICDTI 1256
Query: 1175 RGWLQRTLLFPPLVTWQSGEDMEEWFQLVISCYPLSATGGAELFKLERNISHDERTLLLD 1234
+ W+QRTL FPPL W++G+DMEEW QLV+SCYPL A GG++ LER+I ER+LLLD
Sbjct: 1257 KDWVQRTLSFPPLTAWETGQDMEEWLQLVLSCYPLRALGGSKALNLERDIDPVERSLLLD 1316
Query: 1235 LFRKQRHGG--GIANQLPVVQVLLSQLMVISVGYCWKEFNEDDWSFVFSNLSSWIQSAVV 1292
LFRKQRH G A+QLP+VQ+LLS+LM +SVGYCWKEFNE+DW FV +L WI+SAVV
Sbjct: 1317 LFRKQRHAGKSAAASQLPMVQILLSKLMAVSVGYCWKEFNEEDWEFVLFHLRRWIESAVV 1376
Query: 1293 IMEEAAENVNDAIADSSSSNNLDDIIEKLEKIVFISDPSPINNARNAILSFSLCHNILLC 1352
+MEE AENVND I + SS++ + I+++LE V + D IN ARNA+ +FSL +
Sbjct: 1377 MMEEVAENVNDVIINRPSSDDKEVILKELEHAVLLLDSPRINIARNALFAFSLFSGLTEL 1436
Query: 1353 HGAEDSDNSNPLRTERWDRVRNRIAEGILRLFFCTGICEAIASSYGLESALVIASSRLDH 1412
AED+DNSNPLR ERWD V++RI EGILRLFF TG+ EAIASSY E++ VIAS+RLDH
Sbjct: 1437 QNAEDADNSNPLRRERWDLVKDRIVEGILRLFFSTGVTEAIASSYT-EASSVIASTRLDH 1495
Query: 1413 ICFWELVASSVVNSSPHVKDRAVKSVEFWGLRKGPISALYAILFSSKPIAPLQYAAFVVL 1472
FWEL+A S+VNSS H +DRAV+S+E WGL KGPIS+LYAILFSSKP+ LQ+AA+ +L
Sbjct: 1496 PHFWELIALSIVNSSLHARDRAVRSIELWGLSKGPISSLYAILFSSKPVPSLQFAAYFIL 1555
Query: 1473 SADPVSQLAIFREDSVSSLGADSGVDQDMNCLDLSS-ENVHLQGEISCMIEKLPFQVVEM 1531
+ +PVS AI + + +G + D +D SS E + L+ +ISC+IE+LP++++E+
Sbjct: 1556 ATEPVSNSAIISKGTRYLVGNTT----DTCDIDSSSEEGIQLREDISCIIERLPYEILEV 1611
Query: 1532 DLTAQEWVNVFLAWSLLLSHLSSLPSLTSQRERLVQYILDSANTVILDCIFQHIPLELCE 1591
DL AQ+ V VFLAWSLLLSHL S P + RERL+Q+I +SAN+ ILDCIFQHIPLEL
Sbjct: 1612 DLVAQQRVYVFLAWSLLLSHLLSSPPSSPTRERLIQHIQESANSTILDCIFQHIPLELSS 1671
Query: 1592 MQDLKKKDGDLPAEVSAAATAAKHAITTGSLLFPVESLWPVDPVKLASLAGAIYGLMLCV 1651
LKKKD ++PAE+S AATAA AI+TGSLLF VESLWPV PVK+ASLAGA++GLML V
Sbjct: 1672 AYSLKKKDIEIPAELSEAATAATRAISTGSLLFYVESLWPVGPVKMASLAGALFGLMLRV 1731
Query: 1652 LPAYVRGWFSDLRDRSISSLVESFTRVWCSPPLIANELSQIKKANIADENFSLTVSKSAN 1711
LPAYVR WFSDLRDRS SSL+E FT+ WCSPPLIA+ELSQIKKA+ ADENFS++VSKSAN
Sbjct: 1732 LPAYVRQWFSDLRDRSASSLIEYFTKAWCSPPLIADELSQIKKASFADENFSVSVSKSAN 1791
Query: 1712 EVVATYTKDETKMDLIIRLPASYPLRPVDVECMRSLGISEVKQRKWLMSMMLFVRNQNGA 1771
EVVATYTKDET MDL+IRLP SYPLR VDV+C RSLGISEVKQRKWLMSM FVRNQNGA
Sbjct: 1792 EVVATYTKDETGMDLVIRLPPSYPLRSVDVDCTRSLGISEVKQRKWLMSMTSFVRNQNGA 1851
Query: 1772 LAEAIRIWKRNFDKEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTS 1831
LAEAIRIWK NFDKEFEGVEECPICYSVIHT NHSLPRLACKTCKHKFHSACLYKWFSTS
Sbjct: 1852 LAEAIRIWKNNFDKEFEGVEECPICYSVIHTVNHSLPRLACKTCKHKFHSACLYKWFSTS 1911
Query: 1832 HKSSCPLCQSPF 1843
HKS+CPLCQSPF
Sbjct: 1912 HKSTCPLCQSPF 1923
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255553403|ref|XP_002517743.1| conserved hypothetical protein [Ricinus communis] gi|223543141|gb|EEF44675.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|356499002|ref|XP_003518333.1| PREDICTED: E3 ubiquitin-protein ligase listerin-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449455120|ref|XP_004145301.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase listerin-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|297793377|ref|XP_002864573.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297310408|gb|EFH40832.1| binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|15237191|ref|NP_200649.1| HEAT/U-box domain-containing protein [Arabidopsis thaliana] gi|75309054|sp|Q9FGI1.1|LTN1_ARATH RecName: Full=E3 ubiquitin-protein ligase listerin gi|10177018|dbj|BAB10256.1| unnamed protein product [Arabidopsis thaliana] gi|332009666|gb|AED97049.1| HEAT/U-box domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|357491343|ref|XP_003615959.1| RING finger protein [Medicago truncatula] gi|355517294|gb|AES98917.1| RING finger protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|355430071|gb|AER92597.1| hypothetical protein [Linum usitatissimum] | Back alignment and taxonomy information |
|---|
| >gi|449474466|ref|XP_004154184.1| PREDICTED: E3 ubiquitin-protein ligase listerin-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449506315|ref|XP_004162713.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase listerin-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1843 | ||||||
| TAIR|locus:2161238 | 1873 | AT5G58410 [Arabidopsis thalian | 0.447 | 0.440 | 0.547 | 0.0 | |
| UNIPROTKB|E1C231 | 1766 | LTN1 "E3 ubiquitin-protein lig | 0.112 | 0.117 | 0.413 | 2.7e-74 | |
| DICTYBASE|DDB_G0274875 | 1864 | rnf160 "RING zinc finger-conta | 0.109 | 0.107 | 0.410 | 1.4e-73 | |
| ZFIN|ZDB-GENE-091204-127 | 1751 | si:dkey-175g6.5 "si:dkey-175g6 | 0.112 | 0.118 | 0.423 | 1.2e-72 | |
| UNIPROTKB|I3L9S9 | 1766 | LTN1 "Uncharacterized protein" | 0.113 | 0.118 | 0.414 | 1.6e-72 | |
| MGI|MGI:1926163 | 1767 | Ltn1 "listerin E3 ubiquitin pr | 0.113 | 0.118 | 0.414 | 3.3e-72 | |
| UNIPROTKB|O94822 | 1766 | LTN1 "E3 ubiquitin-protein lig | 0.113 | 0.118 | 0.414 | 5.2e-72 | |
| UNIPROTKB|F1M9Q3 | 1767 | Rnf160 "Protein Rnf160" [Rattu | 0.113 | 0.118 | 0.409 | 1.2e-71 | |
| UNIPROTKB|F1PGK0 | 1770 | LTN1 "Uncharacterized protein" | 0.113 | 0.118 | 0.412 | 1.7e-71 | |
| UNIPROTKB|F1MTS8 | 1898 | LTN1 "Uncharacterized protein" | 0.113 | 0.110 | 0.409 | 8.8e-71 |
| TAIR|locus:2161238 AT5G58410 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2262 (801.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 463/845 (54%), Positives = 576/845 (68%)
Query: 1005 SRAWLAAEVLCTWKWPGGNALDSFLPLLCSHAKSRNLASQQNLLDSIFDILLDGALVHGG 1064
S+AWL+ E+LCTW+WPGG SFLP L S K S LL+SIFDILL+GALVH
Sbjct: 1041 SQAWLSVEILCTWEWPGGKVQTSFLPNLVSFCKDE--PSSGGLLNSIFDILLNGALVHVK 1098
Query: 1065 NSSQSLFDIWPPLDDKVELIEEHFXXXXXXXXXXXXKNDIWERDKAMILFDLLVNKLFVG 1124
+ + L ++W ++ + + E F K D+W ++AM F ++ +KLF+G
Sbjct: 1099 DEEEGLGNMWVDFNNNIVDVVEPFLRALVSFLHILFKEDLWGEEEAMAAFKMITDKLFIG 1158
Query: 1125 EAINKNCLRILPPIITVLVRTLSYRSVGSNEYGRGVDSDTSEGNQVQDTIRGWLQRTLLF 1184
E +KNCLRI+P I+++++ L + V S G+ DT +V +R WL+R+L F
Sbjct: 1159 EETSKNCLRIIPYIMSIIISPLRTK-VKSGGSGK----DTLLPLEV--LLRNWLERSLSF 1211
Query: 1185 PPLVTWQSGEDMEEWFQLVISCYPLSATGGAELFKLERNISHDERTLLLDLFRKQRHGGG 1244
PPLV WQSGED+++WFQLVISCYP+S E +L+R++S +ERTLLLDLFRKQ+ G
Sbjct: 1212 PPLVLWQSGEDIQDWFQLVISCYPVSDKA-EEAKELQRHLSTEERTLLLDLFRKQKQDPG 1270
Query: 1245 ---IANXXXXXXXXXXXXXXISVGYCWKEFNEDDWSFVFSNLSSWIQSAVVIMEEAAEXX 1301
+ I+V YC +FNEDDW FVFSNL IQSAVV+MEE +E
Sbjct: 1271 ASTVVTQLPAVQILLARLIMIAVSYCGNDFNEDDWDFVFSNLKRLIQSAVVVMEETSENV 1330
Query: 1302 XXXXXXXXXXXXXXX--XXEKLEKIVFISDPSPINNARNAILSFSLCHNILLCH-GAEDS 1358
E L IVFISDPS IN+A+NA+ +FSL N L+ H E
Sbjct: 1331 NDFISGVSSMEKEKENDTLEGLGHIVFISDPS-INSAQNALSAFSLL-NALVNHKSVEGE 1388
Query: 1359 DNSNPLRTERWDRVRNRIAEGILRLFFCTGICEAIASSYGLESALVIASSRLDHICFWEL 1418
DN L E WD V++RI EG+LRLFFCTG+ EAIA+SY E+A ++AS R+DH+ FWEL
Sbjct: 1389 DNLKSLADETWDPVKDRILEGVLRLFFCTGLTEAIAASYSPEAASIVASFRVDHLQFWEL 1448
Query: 1419 VASSVVNSSPHVKDRAVKSVEFWGLRKGPISALYAILFSSKPIAPLQYAAFVVLSADPVS 1478
VA VV+SSP +DRAV++VEFWGL +G IS+LYAI+FSS PI LQ AA+ VLS +P+S
Sbjct: 1449 VAHLVVDSSPRARDRAVRAVEFWGLSRGSISSLYAIMFSSNPIPSLQLAAYTVLSTEPIS 1508
Query: 1479 QLAIFREDSVSSLGADSGVDQDMNCLDLSSEN-VHLQGEISCMIEKLPFQVVEMDLTAQE 1537
+LAI D + L +S DQD + L SE+ + L+ E+SCM+EKL ++++ DLTA E
Sbjct: 1509 RLAIVA-DLNAPLNDESLNDQDSSNAGLPSEDKLLLRDEVSCMVEKLDHELLDTDLTAPE 1567
Query: 1538 WVNVFLAWXXXXXXXXXXXXXXXQRERLVQYILDSANTVILDCIFQHIPLELCEMQDLKK 1597
V FLAW RERLVQYI +AN +ILD +FQHIPLEL Q LKK
Sbjct: 1568 RVQTFLAWSLLLSNVNSLPSLTQGRERLVQYIEKTANPLILDSLFQHIPLELYMGQSLKK 1627
Query: 1598 KDGDLPXXXXXXXXXXXXXXXXGSLLFPVESLWPVDPVKLASLAGAIYGLMLCVLPAYVR 1657
KDGD+P GS L VESLWP++ K+ASLAGAIYGLML VLPAYVR
Sbjct: 1628 KDGDIPSELSVVASAATRAIITGSSLSTVESLWPIETGKMASLAGAIYGLMLRVLPAYVR 1687
Query: 1658 GWFSDLRDRSISSLVESFTRVWCSPPLIANELSQIKKANIADENFSLTVSKSANEVVATY 1717
WFS++RDRS SSL+E+FTR WCSP LI NELSQIKKA+ DE+FS+++SK+ANEVVATY
Sbjct: 1688 EWFSEMRDRSASSLIEAFTRTWCSPSLIKNELSQIKKADFNDESFSVSISKAANEVVATY 1747
Query: 1718 TKDETKMDLIIRLPASYPLRPVDVECMRSLGISEVKQRKWLMSMMLFVRNQNGALAEAIR 1777
TKDET MDL+IRLP SYPL+PVDV C +S+GISE KQRKWLMSM +FVR+QNGALAEAIR
Sbjct: 1748 TKDETGMDLVIRLPVSYPLKPVDVNCAKSIGISEAKQRKWLMSMQMFVRHQNGALAEAIR 1807
Query: 1778 IWKRNFDKEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCP 1837
IWKRN DKEFEGVE+CPICYSVIH NHSLPR AC TCK+KFH ACL KWF TS+K CP
Sbjct: 1808 IWKRNSDKEFEGVEDCPICYSVIHIGNHSLPRRACVTCKYKFHKACLDKWFYTSNKKLCP 1867
Query: 1838 LCQSP 1842
LCQSP
Sbjct: 1868 LCQSP 1872
|
|
| UNIPROTKB|E1C231 LTN1 "E3 ubiquitin-protein ligase listerin" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0274875 rnf160 "RING zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-091204-127 si:dkey-175g6.5 "si:dkey-175g6.5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|I3L9S9 LTN1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1926163 Ltn1 "listerin E3 ubiquitin protein ligase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|O94822 LTN1 "E3 ubiquitin-protein ligase listerin" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1M9Q3 Rnf160 "Protein Rnf160" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PGK0 LTN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1MTS8 LTN1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FGI1 | LTN1_ARATH | 6, ., 3, ., 2, ., - | 0.5307 | 0.9690 | 0.9535 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
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 | GSVIVG00023986001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (1814 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1843 | |||
| COG5219 | 1525 | COG5219, COG5219, Uncharacterized conserved protei | 5e-47 | |
| cd00162 | 45 | cd00162, RING, RING-finger (Really Interesting New | 3e-09 | |
| pfam13639 | 46 | pfam13639, zf-RING_2, Ring finger domain | 1e-08 | |
| smart00184 | 40 | smart00184, RING, Ring finger | 4e-07 | |
| pfam13923 | 45 | pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI | 4e-06 | |
| pfam11793 | 70 | pfam11793, FANCL_C, FANCL C-terminal domain | 9e-06 | |
| COG5194 | 88 | COG5194, APC11, Component of SCF ubiquitin ligase | 3e-05 | |
| pfam12678 | 73 | pfam12678, zf-rbx1, RING-H2 zinc finger | 3e-05 | |
| pfam00097 | 40 | pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING | 3e-05 | |
| COG5219 | 1525 | COG5219, COG5219, Uncharacterized conserved protei | 2e-04 | |
| smart00744 | 49 | smart00744, RINGv, The RING-variant domain is a C4 | 3e-04 | |
| COG5540 | 374 | COG5540, COG5540, RING-finger-containing ubiquitin | 7e-04 | |
| pfam12861 | 85 | pfam12861, zf-Apc11, Anaphase-promoting complex su | 0.002 |
| >gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Score = 186 bits (472), Expect = 5e-47
Identities = 77/209 (36%), Positives = 123/209 (58%), Gaps = 5/209 (2%)
Query: 1640 LAGAIYGLMLCVLPAYVRGWFSDLRDRSISSLVESFTRVWCSPPLIANELSQI-----KK 1694
LA IY + W+ L+DR + +E+F SP LI E+ + K+
Sbjct: 1314 LAIHIYYQFFEKMVGEKEEWWVFLKDRGLQRSLEAFVFPNISPSLIKMEVDDLDSFILKE 1373
Query: 1695 ANIADENFSLTVSKSANEVVATYTKDETKMDLIIRLPASYPLRPVDVECMRSLGISEVKQ 1754
A+ + ++ +K NE+ TYT D TK++ +I++P+ YPL+ V VE ++ +G SE+
Sbjct: 1374 ASRTIADVTVKANKLTNEIGITYTADGTKLEALIKIPSGYPLKNVQVEGIKRVGTSEIGW 1433
Query: 1755 RKWLMSMMLFVRNQNGALAEAIRIWKRNFDKEFEGVEECPICYSVIHTANHSLPRLACKT 1814
+ W+ + +NG+ + + +WK+N D++F G EEC ICYSV+ + SLP C T
Sbjct: 1434 KSWINLRQNEMIKKNGSFMDLLGLWKKNIDEKFSGHEECAICYSVLDMVDRSLPSKRCAT 1493
Query: 1815 CKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843
CK+KFH+ CLYKWF++S +S+CPLC+S
Sbjct: 1494 CKNKFHTRCLYKWFASSARSNCPLCRSEI 1522
|
Length = 1525 |
| >gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
| >gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain | Back alignment and domain information |
|---|
| >gnl|CDD|214546 smart00184, RING, Ring finger | Back alignment and domain information |
|---|
| >gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) | Back alignment and domain information |
|---|
| >gnl|CDD|204746 pfam11793, FANCL_C, FANCL C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger) | Back alignment and domain information |
|---|
| >gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|128983 smart00744, RINGv, The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins | Back alignment and domain information |
|---|
| >gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1843 | |||
| COG5219 | 1525 | Uncharacterized conserved protein, contains RING Z | 100.0 | |
| KOG0803 | 1312 | consensus Predicted E3 ubiquitin ligase [Posttrans | 100.0 | |
| KOG0803 | 1312 | consensus Predicted E3 ubiquitin ligase [Posttrans | 99.3 | |
| PF12861 | 85 | zf-Apc11: Anaphase-promoting complex subunit 11 RI | 99.0 | |
| PF11793 | 70 | FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. | 98.76 | |
| PF13639 | 44 | zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C | 98.72 | |
| PF12678 | 73 | zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 | 98.67 | |
| COG5194 | 88 | APC11 Component of SCF ubiquitin ligase and anapha | 98.62 | |
| KOG1493 | 84 | consensus Anaphase-promoting complex (APC), subuni | 98.54 | |
| COG5243 | 491 | HRD1 HRD ubiquitin ligase complex, ER membrane com | 98.5 | |
| COG5540 | 374 | RING-finger-containing ubiquitin ligase [Posttrans | 98.46 | |
| KOG4445 | 368 | consensus Uncharacterized conserved protein, conta | 98.45 | |
| PHA02929 | 238 | N1R/p28-like protein; Provisional | 98.42 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.4 | |
| KOG3268 | 234 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.29 | |
| PHA02926 | 242 | zinc finger-like protein; Provisional | 98.09 | |
| cd00162 | 45 | RING RING-finger (Really Interesting New Gene) dom | 98.08 | |
| KOG2930 | 114 | consensus SCF ubiquitin ligase, Rbx1 component [Po | 98.06 | |
| KOG0802 | 543 | consensus E3 ubiquitin ligase [Posttranslational m | 97.95 | |
| PLN03208 | 193 | E3 ubiquitin-protein ligase RMA2; Provisional | 97.88 | |
| KOG0317 | 293 | consensus Predicted E3 ubiquitin ligase, integral | 97.75 | |
| KOG0828 | 636 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.69 | |
| PF00097 | 41 | zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I | 97.59 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 97.59 | |
| PF13923 | 39 | zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); | 97.51 | |
| PF13920 | 50 | zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); | 97.43 | |
| smart00744 | 49 | RINGv The RING-variant domain is a C4HC3 zinc-fing | 97.4 | |
| smart00184 | 39 | RING Ring finger. E3 ubiquitin-protein ligase acti | 97.37 | |
| KOG0823 | 230 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.28 | |
| smart00504 | 63 | Ubox Modified RING finger domain. Modified RING fi | 97.24 | |
| PF15227 | 42 | zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: | 97.1 | |
| TIGR00599 | 397 | rad18 DNA repair protein rad18. This family is bas | 97.02 | |
| KOG0320 | 187 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.01 | |
| PF14634 | 44 | zf-RING_5: zinc-RING finger domain | 96.86 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 96.83 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 96.48 | |
| KOG1734 | 328 | consensus Predicted RING-containing E3 ubiquitin l | 96.35 | |
| KOG0311 | 381 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.24 | |
| COG5432 | 391 | RAD18 RING-finger-containing E3 ubiquitin ligase [ | 96.22 | |
| KOG0287 | 442 | consensus Postreplication repair protein RAD18 [Re | 96.21 | |
| COG5574 | 271 | PEX10 RING-finger-containing E3 ubiquitin ligase [ | 96.15 | |
| KOG2164 | 513 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.1 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 95.98 | |
| PHA02825 | 162 | LAP/PHD finger-like protein; Provisional | 95.88 | |
| KOG1952 | 950 | consensus Transcription factor NF-X1, contains NFX | 95.8 | |
| PHA02862 | 156 | 5L protein; Provisional | 95.72 | |
| PF13445 | 43 | zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. | 95.45 | |
| PF04564 | 73 | U-box: U-box domain; InterPro: IPR003613 Quality c | 95.43 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 94.88 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.9 | |
| PF12906 | 47 | RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A. | 93.84 | |
| PF08746 | 43 | zf-RING-like: RING-like domain; InterPro: IPR01485 | 93.61 | |
| KOG4172 | 62 | consensus Predicted E3 ubiquitin ligase [Posttrans | 93.38 | |
| KOG1039 | 344 | consensus Predicted E3 ubiquitin ligase [Posttrans | 93.36 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 92.51 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 92.46 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 92.27 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 92.04 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 91.91 | |
| PF14570 | 48 | zf-RING_4: RING/Ubox like zinc-binding domain; PDB | 91.63 | |
| PF14835 | 65 | zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM | 91.5 | |
| PF11789 | 57 | zf-Nse: Zinc-finger of the MIZ type in Nse subunit | 91.35 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 91.05 | |
| KOG4265 | 349 | consensus Predicted E3 ubiquitin ligase [Posttrans | 90.58 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 90.32 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 89.85 | |
| KOG1814 | 445 | consensus Predicted E3 ubiquitin ligase [Posttrans | 89.7 | |
| KOG1785 | 563 | consensus Tyrosine kinase negative regulator CBL [ | 89.61 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 89.39 | |
| KOG4718 | 235 | consensus Non-SMC (structural maintenance of chrom | 88.79 | |
| KOG4159 | 398 | consensus Predicted E3 ubiquitin ligase [Posttrans | 88.79 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 88.66 | |
| smart00591 | 107 | RWD domain in RING finger and WD repeat containing | 88.14 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 88.11 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 87.64 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 87.46 | |
| KOG1829 | 580 | consensus Uncharacterized conserved protein, conta | 87.24 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 86.97 | |
| COG5183 | 1175 | SSM4 Protein involved in mRNA turnover and stabili | 86.87 | |
| KOG2879 | 298 | consensus Predicted E3 ubiquitin ligase [Posttrans | 86.45 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 86.45 | |
| KOG0297 | 391 | consensus TNF receptor-associated factor [Signal t | 86.22 | |
| PF05883 | 134 | Baculo_RING: Baculovirus U-box/Ring-like domain; I | 85.82 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 85.63 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 84.97 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 84.85 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 84.77 | |
| PF10272 | 358 | Tmpp129: Putative transmembrane protein precursor; | 84.53 | |
| KOG2034 | 911 | consensus Vacuolar sorting protein PEP3/VPS18 [Int | 83.99 | |
| KOG1428 | 3738 | consensus Inhibitor of type V adenylyl cyclases/Ne | 83.54 | |
| PF13901 | 202 | DUF4206: Domain of unknown function (DUF4206) | 83.45 | |
| PF10367 | 109 | Vps39_2: Vacuolar sorting protein 39 domain 2; Int | 82.93 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 82.64 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 80.73 |
| >COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-78 Score=727.33 Aligned_cols=282 Identities=29% Similarity=0.536 Sum_probs=249.5
Q ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCC-chhHHHHhhcCCCchhhhhhccccCCCCchhhhHHhhhhccccc
Q 043255 1540 NVFLAWSLLLSHLSSLPSLTSQRERLVQYILDSAN-TVILDCIFQHIPLELCEMQDLKKKDGDLPAEVSAAATAAKHAIT 1618 (1843)
Q Consensus 1540 ~yLl~W~Lvl~~~~~~~~s~~~R~~y~~~lk~~~~-~~lL~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 1618 (1843)
.|||.|+||+-||++. +|++|..++++|+.++. +++++++-+.+.+...- .|+.. .++.+.
T Consensus 1235 vYL~~w~lI~~hf~dT--~yNm~~siI~qL~~~~l~~~~~~~l~~~~~ls~~~----fw~~v------------d~~~~i 1296 (1525)
T COG5219 1235 VYLPLWRLIYGHFADT--VYNMYSSIISQLDMNSLDSEVYVLLRGCFLLSTVL----FWDLV------------DNSLLI 1296 (1525)
T ss_pred HHHHHHHHHHHHHHHh--HHHHHHHHHHHHhhhhhhHHHHHHHHHHhcchhhH----HHHHh------------ccccee
Confidence 8999999999999964 99999999999999999 99999999988877411 11111 111222
Q ss_pred cCCccccccCCCCCChhhHHHHHHHHHHHHHHHhhHHHHHHHhhchhhhhHHHHHHHhHHhcCHHHHHHHHHHHHh----
Q 043255 1619 TGSLLFPVESLWPVDPVKLASLAGAIYGLMLCVLPAYVRGWFSDLRDRSISSLVESFTRVWCSPPLIANELSQIKK---- 1694 (1843)
Q Consensus 1619 ~~~~~~~~e~~~~~~~~~~~~l~~~ly~~~l~~lP~~vr~W~~~~~~r~~~~~ve~~t~~~~Sp~li~~el~~v~~---- 1694 (1843)
.|.+.....+ ....+..||+|+||.+++++.+.++.||..+++|.+++.||+||.-+|||+||+.|++.|..
T Consensus 1297 ~yNi~~nySs----~tdrI~CLa~HiyYq~f~~~~~~~~~ww~~iKdr~lq~~ie~Fv~~nIsp~Lik~e~dDi~s~i~~ 1372 (1525)
T COG5219 1297 VYNISINYSS----ATDRIRCLAIHIYYQFFEKMVGEKEEWWVFLKDRGLQRSLEAFVFPNISPSLIKMEVDDLDSFILK 1372 (1525)
T ss_pred eeeeeccccc----cchhhHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHhccccchhhhhhhhhHHHHHHHH
Confidence 2332210011 33456689999999999999999999999999999999999999999999999999999853
Q ss_pred -ccCCCCceEEEEeccccEEEEEEEecCCceEEEEecCCCCCCCcceEeeccccccCHHHHHHHHHHHHHHHHhccccHH
Q 043255 1695 -ANIADENFSLTVSKSANEVVATYTKDETKMDLIIRLPASYPLRPVDVECMRSLGISEVKQRKWLMSMMLFVRNQNGALA 1773 (1843)
Q Consensus 1695 -~~~~~~~~~Vkv~~~~~EV~a~Y~ide~~~el~I~lP~~YPL~~v~V~~~~~vgvse~k~r~Wll~~~~~i~~qnGsi~ 1773 (1843)
...++..++||+|+.||||.++|.+|++++|+.|+||++|||.+|+|+|.+|||++|++||+|++..|.+++.+||+++
T Consensus 1373 e~s~~~~dvtvK~n~~TnEi~~~Y~~d~~kle~~ikiPs~YPl~NvQVeGi~rVg~sE~~wkswI~~~q~~~~~~ngs~~ 1452 (1525)
T COG5219 1373 EASRTIADVTVKANKLTNEIGITYTADGTKLEALIKIPSGYPLKNVQVEGIKRVGTSEIGWKSWINLRQNEMIKKNGSFM 1452 (1525)
T ss_pred hhhcchhhheeehhhccchheeEEecCCcEEEEEEecCCCCCcccceeccceeccccHHHHHHHHHHHHHHHHhccchHH
Confidence 1123448999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1774 EAIRIWKRNFDKEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1774 d~l~~~k~nv~~~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
|++.+||+|++.+|+|++||||||++++..|+++|.++|+||+|+||..||||||++|++++||+||..|
T Consensus 1453 D~l~l~kkNi~~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1453 DLLGLWKKNIDEKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred HHHHHHHhhhhhhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999865
|
|
| >KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger | Back alignment and domain information |
|---|
| >PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A | Back alignment and domain information |
|---|
| >PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A | Back alignment and domain information |
|---|
| >PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown] | Back alignment and domain information |
|---|
| >PHA02929 N1R/p28-like protein; Provisional | Back alignment and domain information |
|---|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PHA02926 zinc finger-like protein; Provisional | Back alignment and domain information |
|---|
| >cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
| >KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional | Back alignment and domain information |
|---|
| >KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A | Back alignment and domain information |
|---|
| >PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A | Back alignment and domain information |
|---|
| >smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins | Back alignment and domain information |
|---|
| >smart00184 RING Ring finger | Back alignment and domain information |
|---|
| >KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >smart00504 Ubox Modified RING finger domain | Back alignment and domain information |
|---|
| >PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A | Back alignment and domain information |
|---|
| >TIGR00599 rad18 DNA repair protein rad18 | Back alignment and domain information |
|---|
| >KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF14634 zf-RING_5: zinc-RING finger domain | Back alignment and domain information |
|---|
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
| >KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PHA02825 LAP/PHD finger-like protein; Provisional | Back alignment and domain information |
|---|
| >KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription] | Back alignment and domain information |
|---|
| >PHA02862 5L protein; Provisional | Back alignment and domain information |
|---|
| >PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A | Back alignment and domain information |
|---|
| >PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis | Back alignment and domain information |
|---|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
| >PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A | Back alignment and domain information |
|---|
| >PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO) | Back alignment and domain information |
|---|
| >KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B | Back alignment and domain information |
|---|
| >PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B | Back alignment and domain information |
|---|
| >PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C | Back alignment and domain information |
|---|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
| >smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain | Back alignment and domain information |
|---|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
| >COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
| >KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length | Back alignment and domain information |
|---|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans | Back alignment and domain information |
|---|
| >KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13901 DUF4206: Domain of unknown function (DUF4206) | Back alignment and domain information |
|---|
| >PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 | Back alignment and domain information |
|---|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74 | Back alignment and structure |
|---|
Score = 86.5 bits (214), Expect = 1e-20
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 1788 EGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843
+ V+ C IC+S++ +C+TC + H C+ K+F ++ + CP C +
Sbjct: 13 DAVKICNICHSLLIQGQ------SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62
|
| >3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238 | Back alignment and structure |
|---|
| >3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71 | Back alignment and structure |
|---|
| >1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68 | Back alignment and structure |
|---|
| >2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69 | Back alignment and structure |
|---|
| >2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64 | Back alignment and structure |
|---|
| >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
| >2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55 | Back alignment and structure |
|---|
| >1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114 | Back alignment and structure |
|---|
| >2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
| >2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72 | Back alignment and structure |
|---|
| >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 | Back alignment and structure |
|---|
| >2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108 | Back alignment and structure |
|---|
| >2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 | Back alignment and structure |
|---|
| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 | Back alignment and structure |
|---|
| >2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
| >2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74 | Back alignment and structure |
|---|
| >1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55 | Back alignment and structure |
|---|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133 | Back alignment and structure |
|---|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133 | Back alignment and structure |
|---|
| >2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78 | Back alignment and structure |
|---|
| >2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 | Back alignment and structure |
|---|
| >2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80 | Back alignment and structure |
|---|
| >1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Length = 60 | Back alignment and structure |
|---|
| >1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170 | Back alignment and structure |
|---|
| >2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69 | Back alignment and structure |
|---|
| >1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65 | Back alignment and structure |
|---|
| >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78 | Back alignment and structure |
|---|
| >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118 | Back alignment and structure |
|---|
| >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74 | Back alignment and structure |
|---|
| >4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117 | Back alignment and structure |
|---|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
| >3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106 | Back alignment and structure |
|---|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
| >1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117 | Back alignment and structure |
|---|
| >2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
| >4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149 | Back alignment and structure |
|---|
| >1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116 | Back alignment and structure |
|---|
| >2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1843 | |||
| 2ct0_A | 74 | Non-SMC element 1 homolog; ring domain, structural | 99.35 | |
| 3k1l_B | 381 | Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A | 99.3 | |
| 1iym_A | 55 | EL5; ring-H2 finger, ubiquitin ligase, DNA binding | 98.88 | |
| 1x4j_A | 75 | Ring finger protein 38; structural genomics, NPPSF | 98.84 | |
| 3nw0_A | 238 | Non-structural maintenance of chromosomes element | 98.82 | |
| 2ecl_A | 81 | Ring-box protein 2; RNF7, ring domian, zinc-bindin | 98.81 | |
| 2kiz_A | 69 | E3 ubiquitin-protein ligase arkadia; ring-H2 finge | 98.76 | |
| 3dpl_R | 106 | Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST | 98.74 | |
| 1v87_A | 114 | Deltex protein 2; ring-H2 domain, zinc-binding dom | 98.72 | |
| 2ep4_A | 74 | Ring finger protein 24; zinc binding, ubiquitin, E | 98.72 | |
| 2l0b_A | 91 | E3 ubiquitin-protein ligase praja-1; zinc finger, | 98.72 | |
| 2ecm_A | 55 | Ring finger and CHY zinc finger domain- containing | 98.7 | |
| 2ea6_A | 69 | Ring finger protein 4; RNF4, RES4-26, ring domain, | 98.69 | |
| 2ect_A | 78 | Ring finger protein 126; metal binding protein, st | 98.66 | |
| 4a0k_B | 117 | E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi | 98.62 | |
| 2d8s_A | 80 | Cellular modulator of immune recognition; C-MIR, m | 98.61 | |
| 3ng2_A | 71 | RNF4, snurf, ring finger protein 4; ring domain, E | 98.6 | |
| 2xeu_A | 64 | Ring finger protein 4; transcription, zinc-finger, | 98.56 | |
| 1chc_A | 68 | Equine herpes virus-1 ring domain; viral protein; | 98.49 | |
| 2ct2_A | 88 | Tripartite motif protein 32; zinc-finger protein H | 98.46 | |
| 2djb_A | 72 | Polycomb group ring finger protein 6; PCGF6, ring | 98.44 | |
| 2yur_A | 74 | Retinoblastoma-binding protein 6; P53-associated c | 98.43 | |
| 3lrq_A | 100 | E3 ubiquitin-protein ligase TRIM37; structural gen | 98.42 | |
| 2ysl_A | 73 | Tripartite motif-containing protein 31; ring-type | 98.38 | |
| 2ecn_A | 70 | Ring finger protein 141; RNF141, ring domain, zinc | 98.38 | |
| 2ecy_A | 66 | TNF receptor-associated factor 3; metal binding pr | 98.36 | |
| 2d8t_A | 71 | Dactylidin, ring finger protein 146; RNF146, ring | 98.33 | |
| 4ayc_A | 138 | E3 ubiquitin-protein ligase RNF8; DNA damage, K63 | 98.32 | |
| 2ecv_A | 85 | Tripartite motif-containing protein 5; metal bindi | 98.27 | |
| 1vyx_A | 60 | ORF K3, K3RING; zinc-binding protein, ring domain, | 98.26 | |
| 2ecw_A | 85 | Tripartite motif-containing protein 30; metal bind | 98.26 | |
| 2y43_A | 99 | E3 ubiquitin-protein ligase RAD18; DNA repair, met | 98.26 | |
| 3ztg_A | 92 | E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR | 98.25 | |
| 2ckl_B | 165 | Ubiquitin ligase protein RING2; BMI1, RING1B, poly | 98.24 | |
| 2csy_A | 81 | Zinc finger protein 183-like 1; ring finger protei | 98.23 | |
| 2egp_A | 79 | Tripartite motif-containing protein 34; ZF-C3HC4 d | 98.22 | |
| 1e4u_A | 78 | Transcriptional repressor NOT4; gene regulation, t | 98.2 | |
| 1t1h_A | 78 | Gspef-atpub14, armadillo repeat containing protein | 98.19 | |
| 1g25_A | 65 | CDK-activating kinase assembly factor MAT1; ring f | 98.18 | |
| 3fl2_A | 124 | E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA | 98.16 | |
| 2ysj_A | 63 | Tripartite motif-containing protein 31; ring-type | 98.15 | |
| 2ckl_A | 108 | Polycomb group ring finger protein 4; BMI1, RING1B | 98.15 | |
| 2ecj_A | 58 | Tripartite motif-containing protein 39; TRIM39, ri | 98.13 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 98.09 | |
| 1jm7_A | 112 | BRCA1, breast cancer type 1 susceptibility protein | 98.09 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 98.08 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.06 | |
| 3l11_A | 115 | E3 ubiquitin-protein ligase RNF168; E3 ligase, rin | 97.95 | |
| 1z6u_A | 150 | NP95-like ring finger protein isoform B; structura | 97.95 | |
| 1rmd_A | 116 | RAG1; V(D)J recombination, antibody, MAD, ring fin | 97.91 | |
| 3hct_A | 118 | TNF receptor-associated factor 6; cross-brace, bet | 97.89 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 97.88 | |
| 2y1n_A | 389 | E3 ubiquitin-protein ligase; ligase-transferase co | 97.88 | |
| 1jm7_B | 117 | BARD1, BRCA1-associated ring domain protein 1; rin | 97.72 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.61 | |
| 3knv_A | 141 | TNF receptor-associated factor 2; cross-brace, alt | 97.56 | |
| 2kr4_A | 85 | Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri | 97.49 | |
| 2kre_A | 100 | Ubiquitin conjugation factor E4 B; U-box domain, E | 97.48 | |
| 1wgm_A | 98 | Ubiquitin conjugation factor E4A; ubiquitinating e | 97.43 | |
| 2f42_A | 179 | STIP1 homology and U-box containing protein 1; cha | 97.39 | |
| 1bor_A | 56 | Transcription factor PML; proto-oncogene, nuclear | 97.37 | |
| 4ic3_A | 74 | E3 ubiquitin-protein ligase XIAP; ring domain, zin | 97.34 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.31 | |
| 3hcs_A | 170 | TNF receptor-associated factor 6; cross-brace, bet | 97.28 | |
| 2vje_A | 64 | E3 ubiquitin-protein ligase MDM2; proto-oncogene, | 97.27 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 97.25 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 97.2 | |
| 2yu4_A | 94 | E3 SUMO-protein ligase NSE2; SP-ring domain, struc | 97.15 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 97.11 | |
| 2vje_B | 63 | MDM4 protein; proto-oncogene, phosphorylation, alt | 97.09 | |
| 3htk_C | 267 | E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- | 97.04 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 97.01 | |
| 2ecg_A | 75 | Baculoviral IAP repeat-containing protein 4; BIRC4 | 96.92 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 96.91 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 96.86 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 96.86 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 96.67 | |
| 1wim_A | 94 | KIAA0161 protein; ring finger domain, UBCM4-intera | 96.6 | |
| 3t6p_A | 345 | Baculoviral IAP repeat-containing protein 2; ring, | 96.33 | |
| 2bay_A | 61 | PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l | 96.3 | |
| 2ea5_A | 68 | Cell growth regulator with ring finger domain prot | 96.19 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 96.11 | |
| 2yho_A | 79 | E3 ubiquitin-protein ligase mylip; ligase, E2 liga | 96.1 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 96.03 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 96.01 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 94.94 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 94.52 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 94.44 | |
| 3vk6_A | 101 | E3 ubiquitin-protein ligase hakai; HYB, phosphotyr | 94.0 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 93.62 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 93.21 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 93.04 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 92.23 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 92.01 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 91.94 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 91.17 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 90.73 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 90.3 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 89.72 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 89.61 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 89.59 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 89.05 | |
| 2day_A | 128 | Ring finger protein 25; ligase, metal-binding, UB1 | 89.03 | |
| 2daw_A | 154 | RWD domain containing protein 2; alpha+beta sandwi | 87.13 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 85.16 | |
| 2ebm_A | 128 | RWD domain-containing protein 1; alpha+beta sandwi | 84.98 | |
| 1ukx_A | 137 | GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple | 84.79 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 84.61 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 84.37 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 83.73 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 83.61 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 83.48 | |
| 2yz0_A | 138 | Serine/threonine-protein kinase GCN2; A-B-B-B-B-A- | 83.21 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 82.4 | |
| 2ebk_A | 128 | RWD domain-containing protein 3; alpha+beta sandwi | 82.15 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 82.07 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 80.77 |
| >2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-13 Score=127.01 Aligned_cols=56 Identities=27% Similarity=0.692 Sum_probs=50.2
Q ss_pred hcccccCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1782 NFDKEFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1782 nv~~~~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
|.+...+++++|+||++++. |.++|.+|+|.||.+||++||+++++++||+||++|
T Consensus 7 ~~~~y~~~i~~C~IC~~~i~------~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w 62 (74)
T 2ct0_A 7 GRETYPDAVKICNICHSLLI------QGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62 (74)
T ss_dssp CCCCCSSSSCBCSSSCCBCS------SSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCC
T ss_pred chhhccCCCCcCcchhhHcc------cCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcC
Confidence 56677888999999999997 457899999999999999999987778999999986
|
| >3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
| >2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A | Back alignment and structure |
|---|
| >1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A | Back alignment and structure |
|---|
| >2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
| >4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} | Back alignment and structure |
|---|
| >2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
| >1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
| >2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C | Back alignment and structure |
|---|
| >2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 | Back alignment and structure |
|---|
| >2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B | Back alignment and structure |
|---|
| >2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B | Back alignment and structure |
|---|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 | Back alignment and structure |
|---|
| >1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
| >2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A | Back alignment and structure |
|---|
| >2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
| >1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} | Back alignment and structure |
|---|
| >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 | Back alignment and structure |
|---|
| >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A | Back alignment and structure |
|---|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
| >2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* | Back alignment and structure |
|---|
| >1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
| >3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B | Back alignment and structure |
|---|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 | Back alignment and structure |
|---|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C | Back alignment and structure |
|---|
| >1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A | Back alignment and structure |
|---|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A | Back alignment and structure |
|---|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
| >2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* | Back alignment and structure |
|---|
| >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
| >2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
| >1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B | Back alignment and structure |
|---|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A | Back alignment and structure |
|---|
| >2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
| >2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A | Back alignment and structure |
|---|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
| >3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} | Back alignment and structure |
|---|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
| >2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A | Back alignment and structure |
|---|
| >2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3 | Back alignment and structure |
|---|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
| >2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3 | Back alignment and structure |
|---|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
| >2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1843 | ||||
| d1vyxa_ | 60 | g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do | 6e-12 | |
| d1chca_ | 68 | g.44.1.1 (A:) Immediate early protein, IEEHV {Equi | 4e-10 | |
| d1iyma_ | 55 | g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati | 5e-10 | |
| d3dplr1 | 88 | g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S | 2e-09 | |
| d1g25a_ | 65 | g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi | 5e-08 | |
| d1ur6b_ | 52 | g.44.1.1 (B:) Not-4 N-terminal RING finger domain | 7e-07 | |
| d1bora_ | 56 | g.44.1.1 (A:) Acute promyelocytic leukaemia proto- | 7e-07 | |
| d1v87a_ | 114 | g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou | 2e-06 | |
| d1fbva4 | 79 | g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta | 2e-06 | |
| d1rmda2 | 86 | g.44.1.1 (A:1-86) V(D)J recombination activating p | 2e-06 | |
| d1jm7a_ | 103 | g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie | 1e-04 | |
| d1wima_ | 94 | g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016 | 2e-04 | |
| d1jm7b_ | 97 | g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie | 0.004 |
| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: Variant RING domain domain: IE1B protein (ORF K3), N-terminal domain species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]
Score = 60.3 bits (145), Expect = 6e-12
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 1786 EFEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843
E E V C IC + N C H +CL W + S ++C +C +
Sbjct: 2 EDEDVPVCWICNEELG--NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57
|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 | Back information, alignment and structure |
|---|
| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55 | Back information, alignment and structure |
|---|
| >d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 | Back information, alignment and structure |
|---|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52 | Back information, alignment and structure |
|---|
| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 | Back information, alignment and structure |
|---|
| >d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114 | Back information, alignment and structure |
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| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 | Back information, alignment and structure |
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| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 | Back information, alignment and structure |
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| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
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| >d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
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| >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
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Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1843 | |||
| d1iyma_ | 55 | EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 | 99.14 | |
| d1ur6b_ | 52 | Not-4 N-terminal RING finger domain {Human (Homo s | 98.98 | |
| d3dplr1 | 88 | RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase | 98.96 | |
| d1vyxa_ | 60 | IE1B protein (ORF K3), N-terminal domain {Kaposi's | 98.94 | |
| d1chca_ | 68 | Immediate early protein, IEEHV {Equine herpesvirus | 98.88 | |
| d1g25a_ | 65 | TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 | 98.8 | |
| d1v87a_ | 114 | Deltex protein 2 RING-H2 domain {Mouse (Mus muscul | 98.78 | |
| d1fbva4 | 79 | CBL {Human (Homo sapiens) [TaxId: 9606]} | 98.58 | |
| d2baya1 | 56 | Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac | 98.32 | |
| d1jm7a_ | 103 | brca1 RING domain {Human (Homo sapiens) [TaxId: 96 | 98.28 | |
| d1rmda2 | 86 | V(D)J recombination activating protein 1 (RAG1), d | 98.2 | |
| d1jm7b_ | 97 | bard1 RING domain {Human (Homo sapiens) [TaxId: 96 | 98.1 | |
| d1bora_ | 56 | Acute promyelocytic leukaemia proto-oncoprotein PM | 98.02 | |
| d2c2la2 | 80 | STIP1 homology and U box-containing protein 1, STU | 97.71 | |
| d1t1ha_ | 78 | E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi | 97.55 | |
| d1wima_ | 94 | UbcM4-interacting protein 4 (KIAA0161) {Human (Hom | 97.39 | |
| d1wgma_ | 98 | Ubiquitin conjugation factor E4A {Human (Homo sapi | 97.27 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.81 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 96.6 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 96.27 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 96.13 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 95.97 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 95.97 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 94.44 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 93.61 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 93.5 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 93.3 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 92.38 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 92.36 | |
| d2daya1 | 115 | E3 ubiquitin-protein ligase RNF25 {Human (Homo sap | 91.63 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 90.83 | |
| d1wila_ | 89 | Hypothetical protein KIAA1045 {Human (Homo sapiens | 90.69 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 89.87 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 88.8 |
| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: EL5 RING-H2 domain species: Rice (Oryza sativa) [TaxId: 4530]
Probab=99.14 E-value=7.7e-12 Score=109.39 Aligned_cols=52 Identities=27% Similarity=0.772 Sum_probs=41.8
Q ss_pred cCCCcccccccccccccCcccccccccccCCccCHhhHHHHHhcCCCCCCCCCCCCC
Q 043255 1787 FEGVEECPICYSVIHTANHSLPRLACKTCKHKFHSACLYKWFSTSHKSSCPLCQSPF 1843 (1843)
Q Consensus 1787 ~~g~eeCaICys~~~~~d~~lP~~~C~~C~h~FH~~CL~kWf~~s~~stCPlCR~~~ 1843 (1843)
.+...+|+||++.+..++. . ..++.|+|.||..||.+||++ +++||+||.++
T Consensus 2 ~ed~~~C~ICl~~~~~~~~-~--~~l~~C~H~Fh~~Ci~~Wl~~--~~~CP~CR~~i 53 (55)
T d1iyma_ 2 MDDGVECAVCLAELEDGEE-A--RFLPRCGHGFHAECVDMWLGS--HSTCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSC-C--EECSSSCCEECTTHHHHTTTT--CCSCSSSCCCS
T ss_pred CCCCCCCeEECccccCCCE-E--EEeCCCCCcccHHHHHHHHHh--CCcCCCCCCEe
Confidence 3455689999999986442 1 345679999999999999996 57999999875
|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} | Back information, alignment and structure |
|---|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} | Back information, alignment and structure |
|---|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|