Citrus Sinensis ID: 043276

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------83
GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVPKTKALENFRVRWKRKFLQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGDYIFVDGQLQSSAFEIINVNNGARGVGFWSPEKGLTQKLSSNSTTKSKLRPIIWPGDSTSDPKGWEIPTNEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPDAGTVVSARSLGLNSFWGLFLIAGIAAILALIIFLAVFVHEHWNVLKNSESSLLSRIRIFLRIFVSRDLSAHTFKDKGGIQVHGMGPTEASPDSRYPASPSSYSQHADSHFLFYGEQGTPRTESGNSNHNPNSQAQAPPEIVSAVELTNPDQEIARSPQVVRENN
ccccHHHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHHHcccEEEEEEEEccccccHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHccccccccccEEEccccccccEEEEEEcccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccEEEEcccccccccEEEEEHHHHHHHHHHcccccEEEEEEcccccccccccHHHHHHHHHcccccEEEEcEEEEEcccccEEcccccccccEEEEEEcccccccccEEccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHcccccEEEccccccHHccccccccccHHccccHHHHHHHHccccccccEEEEEEcHHHHHHHHHcccccEEEcccccccccEEEEccccccccHHHHHHHHHcccccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccHHHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHccccccEEEEEEcccHHHccccccccHcccccEEEEEEEccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEccccccccccccccccccccHHHHHHHHHccEccccEEEEEccccEccccEEEEEEccccEEEEEEEccccEEEEcccccccccccccEEEcccccccccccEEcccccEEEEEEEcccccEEEEEEccccccccccEEEEHHHHHHHHHHHccccEEEEEEEcccccccccccHHHHHHHHHHccccEEEEEEEEEEEcEEEEEcccHHHHccEEEEEEccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccEHEEEHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHccccccEccccHHHHHHHHccccHHEEHHcccHHHHHHHHccccccccEEEEEEccHHHHHHHHcccccEEEEcccEcccccEEEcccccccHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccHcccccEEEEEcc
galndssqVGAITAIIKAFgwreavpiyvdnqygeeliPSLTDALQAIdtrvpyrsvisplatdDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLrtlepsvtdsmqgvigvrpyvpktkaLENFRVRWKRKFlqenpslfdaELNIFGLLAYDATSALAVAVEKAgitgfgfdktnvssnatdleafgisqngPKLLQALSSIRfrgltgdyifvdgqlqsSAFEIINvnngargvgfwspekgltqklssnsttksklrpiiwpgdstsdpkgweiptnekklrvgvpvkkgfSDFVKvtidpktqetsvvGYSIDVFKAVIEELpyavaydfvpyaqpdgtssgsyndLIYQVFLGefdavvgdttivfnrsnyvdftlpytesgvsmivpikdskkrnAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHrvnedfrgparhqvgtsfwFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSlltvdqlqptitDVNLLIkrgdnvgyqkgSFVLGILKqlgfderklvVYNSHEECDELFqkgsanggiaaafdeipYAKLLigqhcskytmveptfktagfgfafplhsplvhdVSKAILNVTEGDKMKEIEDAWFkkhsscpdagtvVSARSLGLNSFWGLFLIAGIAAILALIIFLAVFVHEHWNVLKNSESSLLSRIRIFLRIFVSrdlsahtfkdkggiqvhgmgpteaspdsrypaspssysqhadshflfygeqgtprtesgnsnhnpnsqaqappeivsaveltnpdqeiarspqvvrenn
galndssqvGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLepsvtdsmqgvigvrpyvpktkaLENFRVRWKRKFLQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGDYIFVDGQLQSSAFEIINVNNGARGVGFWSPEKGltqklssnsttksklrpiiwpgdstsdpkgweiptnekklrvgvpvkkgfsdfvkvtidpktqetsvvgYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVdftlpytesgvSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPDAGTVVSARSLGLNSFWGLFLIAGIAAILALIIFLAVFVHEHWNVLKNSESSLLSRIRIFLRIFVSRDLSAHTFKDKGGIQVHGMGPTEASPDSRYPASPSSYSQHADSHFLFYGEQGTPRTESGNSNHNPNSQAQAPPEIVSAVELTNpdqeiarspqvvrenn
GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVPKTKALENFRVRWKRKFLQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGDYIFVDGQLQSSAFEIINVNNGARGVGFWSPEKGltqklssnsttksklRPIIWPGDSTSDPKGWEIPTNEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPDAGTVVSARSLGLNSFWglfliagiaailaliiflaVFVHEHWNVLKNSESSLLSRIRIFLRIFVSRDLSAHTFKDKGGIQVHGMGPTEASPDSRYPASPSSYSQHADSHFLFYGEQGTPRTESGNSNHNPNSQAQAPPEIVSAVELTNPDQEIARSPQVVRENN
********VGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVPKTKALENFRVRWKRKFLQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGDYIFVDGQLQSSAFEIINVNNGARGVGFWS*********************IIW*****************KKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPDAGTVVSARSLGLNSFWGLFLIAGIAAILALIIFLAVFVHEHWNVLKNSESSLLSRIRIFLRIFVSRDLSAHTFKDKGG**************************************************************************************
**LNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISP********KELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVPKTKALENFRVRWKRKF********DAELNIFGLLAYDATSALAVAVEKAG**********************ISQNGPKLLQALSSIRFRGLTGDYIFVDGQLQSSAFEIINVNNGARGVGFWSPEKGLTQ***************IWPGDSTSDPKGWEIPTNEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNVGYQKGSFVLGILKQLGF**********************ANGGIAAAFDEIPYAKLLIGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWF*********************SFWGLFLIAGIAAILALIIFLAVFVHEHWNV***********IRIFLR*******************************************************************************************************
********VGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVPKTKALENFRVRWKRKFLQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGDYIFVDGQLQSSAFEIINVNNGARGVGFWSPEKGLTQ**********KLRPIIWPGDSTSDPKGWEIPTNEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPDAGTVVSARSLGLNSFWGLFLIAGIAAILALIIFLAVFVHEHWNVLKNSESSLLSRIRIFLRIFVSRDLSAHTFKDKGGIQVHG*********************HADSHFLFYGEQGT*****************APPEIVSAVELTNPDQEIAR*********
**LNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVPKTKALENFRVRWKRKFLQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGDYIFVDGQLQSSAFEIINVNNGARGVGFWSPEKGLTQKLSSNSTTKSKLRPIIWPGDSTSDPKGWEIPTNEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPD******ARSLGLNSFWGLFLIAGIAAILALIIFLAVFVHEHWNVLKNSESSLLSRIRIFLRIFVSRD********************************************************************APPEIVSAVELTNPDQEIARSPQVVR***
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GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVPKTKALENFRVRWKRKFLQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGDYIFVDGQLQSSAFEIINVNNGARGVGFWSPEKGLTQKLSSNSTTKSKLRPIIWPGDSTSDPKGWEIPTNEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPDAGTVVSARSLGLNSFWGLFLIAGIAAILALIIFLAVFVHEHWNVLKNSESSLLSRIRIFLRIFVSRDLSAHTFKDKGGIQVHGMGPTEASPDSRYPASPSSYSQHADSHFLFYGEQGTPRTESGNSNHNPNSQAQAPPEIVSAVELTNPDQEIARSPQVVRENN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query829 2.2.26 [Sep-21-2011]
Q8LGN0952 Glutamate receptor 2.7 OS yes no 0.897 0.781 0.544 0.0
Q9C5V5947 Glutamate receptor 2.8 OS no no 0.901 0.788 0.554 0.0
O81078940 Glutamate receptor 2.9 OS no no 0.897 0.791 0.535 0.0
O04660901 Glutamate receptor 2.1 OS no no 0.833 0.766 0.534 0.0
Q9SHV1920 Glutamate receptor 2.2 OS no no 0.805 0.726 0.544 0.0
Q9SHV2895 Glutamate receptor 2.3 OS no no 0.837 0.775 0.516 0.0
Q9LFN5918 Glutamate receptor 2.5 OS no no 0.832 0.751 0.499 0.0
O81776896 Glutamate receptor 2.4 OS no no 0.827 0.765 0.514 0.0
Q9LFN8967 Glutamate receptor 2.6 OS no no 0.828 0.710 0.476 0.0
Q9C8E7933 Glutamate receptor 3.3 OS no no 0.891 0.792 0.361 1e-138
>sp|Q8LGN0|GLR27_ARATH Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3 Back     alignment and function desciption
 Score =  845 bits (2184), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/770 (54%), Positives = 565/770 (73%), Gaps = 26/770 (3%)

Query: 1   GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISP 60
             L+DSSQV AI AI+K+FGWR  V IYVDN++GE ++P LTDALQ +   V  R +I  
Sbjct: 151 ATLDDSSQVKAIAAIVKSFGWRNVVAIYVDNEFGEGILPLLTDALQDVQAFVVNRCLIPQ 210

Query: 61  LATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLL 120
            A DDQI KELYKL TMQTRVF++HM P+LG R F+KA EIG+M +G VW++TDG+ NLL
Sbjct: 211 EANDDQILKELYKLMTMQTRVFVVHMPPTLGFRFFQKAREIGMMEEGYVWLLTDGVMNLL 270

Query: 121 RTLEP-SVTDSMQGVIGVRPYVPKTKALENFRVRWKRKFLQENPSLFDAELNIFGLLAYD 179
           ++ E  S  ++MQGV+GVR ++PK+K L+NFR+RW++ F ++     D E+NIF L AYD
Sbjct: 271 KSNERGSSLENMQGVLGVRSHIPKSKKLKNFRLRWEKMFPKKGN---DEEMNIFALRAYD 327

Query: 180 ATSALAVAVEKAGITGFGFDKTNVS-SNATDLEAFGISQNGPKLLQALSSIRFRGLTGDY 238
           + +ALA+AVEK  I    +D    S +N T+L   G+S+ GP LL+ALS++RF GL G++
Sbjct: 328 SITALAMAVEKTNIKSLRYDHPIASGNNKTNLGTLGVSRYGPSLLKALSNVRFNGLAGEF 387

Query: 239 IFVDGQLQSSAFEIINV-NNGARGVGFWSPEKGLTQKLSSNSTT--KSKLRPIIWPGDST 295
             ++GQL+SS F++IN+  +  R +G W P  G+    S N+T+    +L P+IWPG S 
Sbjct: 388 ELINGQLESSVFDVINIIGSEERIIGLWRPSNGIVNAKSKNTTSVLGERLGPVIWPGKSK 447

Query: 296 SDPKGWEIPTNEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYA 355
             PKGW+IPTN K LRVG+PVKKGF +FV   IDP +   +  GY I++F+AV+++LPY+
Sbjct: 448 DVPKGWQIPTNGKMLRVGIPVKKGFLEFVDAKIDPISNAMTPTGYCIEIFEAVLKKLPYS 507

Query: 356 VAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVS 415
           V   ++ +  PD     +Y++++YQV+ G +DAVVGD TIV NRS YVDFTLPYTESGVS
Sbjct: 508 VIPKYIAFLSPDE----NYDEMVYQVYTGAYDAVVGDVTIVANRSLYVDFTLPYTESGVS 563

Query: 416 MIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFRGPARHQVGT 475
           M+VP+KD+K  N WVFL+P + DLWVT+ CFF+FIGF+VW+LEHRVN DFRGP  HQ+GT
Sbjct: 564 MMVPLKDNK--NTWVFLRPWSLDLWVTTACFFVFIGFIVWILEHRVNTDFRGPPHHQIGT 621

Query: 476 SFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDV 535
           SFWF+FSTM F+ RE+V+SNLARFVV+VWCFVVL+LIQSYTA+LTS  TV  LQPT+T+ 
Sbjct: 622 SFWFAFSTMNFAHREKVVSNLARFVVLVWCFVVLVLIQSYTANLTSFFTVKLLQPTVTNW 681

Query: 536 NLLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDE 595
             LIK   N+GYQ+G+FV  +LK  GFDE +L  + S  ECDELF    +NG I A+FDE
Sbjct: 682 KDLIKFNKNIGYQRGTFVRELLKSQGFDESQLKPFGSAVECDELF----SNGTITASFDE 737

Query: 596 IPYAKLLIGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDA 655
           + Y K+++ Q+ SKYTMVEP+FKTAGFGF FP  SPL  DVS+AILNVT+G++M+ IE+ 
Sbjct: 738 VAYIKVILSQNSSKYTMVEPSFKTAGFGFVFPKKSPLTDDVSRAILNVTQGEEMQHIENK 797

Query: 656 WFKKHSSCPDAGTVVSARSLGLNSFWGLFLIAGIAAILALIIFLAVFVHEHWNVL-KNSE 714
           WFKK ++CPD  T +S+  L L+SFWGLFLIAGIA+ LAL+IF+A F++EH + L  +SE
Sbjct: 798 WFKKPNNCPDLNTSLSSNHLSLSSFWGLFLIAGIASFLALLIFVANFLYEHKHTLFDDSE 857

Query: 715 SSLLSRIRIFLRIFVSRDLSAHTFKDKGGIQVHGMGPTEASPDSRYPASP 764
           +S   +++  +R F  +D+ +H FK+     VH +    +SP ++  +SP
Sbjct: 858 NSFRGKLKFLVRNFDEKDIKSHMFKENA---VHNV----SSPITQGSSSP 900
Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9C5V5|GLR28_ARATH Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=GLR2.8 PE=2 SV=2 Back     alignment and function description
>sp|O81078|GLR29_ARATH Glutamate receptor 2.9 OS=Arabidopsis thaliana GN=GLR2.9 PE=2 SV=1 Back     alignment and function description
>sp|O04660|GLR21_ARATH Glutamate receptor 2.1 OS=Arabidopsis thaliana GN=GLR2.1 PE=2 SV=2 Back     alignment and function description
>sp|Q9SHV1|GLR22_ARATH Glutamate receptor 2.2 OS=Arabidopsis thaliana GN=GLR2.2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SHV2|GLR23_ARATH Glutamate receptor 2.3 OS=Arabidopsis thaliana GN=GLR2.3 PE=2 SV=1 Back     alignment and function description
>sp|Q9LFN5|GLR25_ARATH Glutamate receptor 2.5 OS=Arabidopsis thaliana GN=GLR2.5 PE=1 SV=2 Back     alignment and function description
>sp|O81776|GLR24_ARATH Glutamate receptor 2.4 OS=Arabidopsis thaliana GN=GLR2.4 PE=2 SV=2 Back     alignment and function description
>sp|Q9LFN8|GLR26_ARATH Glutamate receptor 2.6 OS=Arabidopsis thaliana GN=GLR2.6 PE=2 SV=2 Back     alignment and function description
>sp|Q9C8E7|GLR33_ARATH Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=GLR3.3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query829
255548644 931 glutamate receptor 2 plant, putative [Ri 0.958 0.853 0.652 0.0
255548642 961 glutamate receptor 2 plant, putative [Ri 0.969 0.836 0.641 0.0
224142031867 glutamate-gated kainate-type ion channel 0.891 0.852 0.681 0.0
224142035869 glutamate-gated kainate-type ion channel 0.891 0.850 0.676 0.0
224142043885 glutamate-gated kainate-type ion channel 0.908 0.850 0.667 0.0
224142049883 glutamate-gated kainate-type ion channel 0.901 0.845 0.663 0.0
255548632 971 glutamate receptor 2 plant, putative [Ri 0.965 0.823 0.627 0.0
359476446 983 PREDICTED: glutamate receptor 2.8-like [ 0.990 0.835 0.614 0.0
224142027856 glutamate-gated kainate-type ion channel 0.841 0.815 0.688 0.0
147787550 960 hypothetical protein VITISV_032974 [Viti 0.948 0.818 0.621 0.0
>gi|255548644|ref|XP_002515378.1| glutamate receptor 2 plant, putative [Ricinus communis] gi|223545322|gb|EEF46827.1| glutamate receptor 2 plant, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1095 bits (2833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/824 (65%), Positives = 645/824 (78%), Gaps = 29/824 (3%)

Query: 4   NDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLAT 63
           NDS+QVGAI A+I+AFGWREAVPIYVDN+YG+ +IP LTDALQAID R+PYRS+IS  AT
Sbjct: 124 NDSTQVGAIAALIQAFGWREAVPIYVDNEYGQGVIPYLTDALQAIDARIPYRSLISFSAT 183

Query: 64  DDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTL 123
           DDQI +ELYKL +MQTRVFILHMLPSLGSR+  KA E+G+M++G VWIMT+GM++ LR+L
Sbjct: 184 DDQIAEELYKLMSMQTRVFILHMLPSLGSRLLTKAREVGMMSEGYVWIMTNGMSDYLRSL 243

Query: 124 EPSVTDSMQGVIGVRPYVPKTKALENFRVRWKRKFLQENPSLFDAELNIFGLLAYDATSA 183
            PSV +SMQGV+GVRPYVPKTK LE F VRWK KFLQ+NP   D E +I+ L AYDA  A
Sbjct: 244 TPSVIESMQGVLGVRPYVPKTKELEIFYVRWKSKFLQDNPGTVDVESSIYELWAYDAAIA 303

Query: 184 LAVAVEKAGITGFGFDKTNVSSNAT-DLEAFGISQNGPKLLQALSSIRFRGLTGDYIFVD 242
           LA+A+EKAG     F K N SSN+T DL  FG+S N P LLQALS+  F+GL GD++FV+
Sbjct: 304 LAMAIEKAGAAKIDFQKANTSSNSTTDLTTFGVSLNDPDLLQALSNTGFKGLAGDFLFVN 363

Query: 243 GQLQSSAFEIINV-NNGARGVGFWSPEKGLTQKLSS------NSTTKSKLRPIIWPGDST 295
           GQL SSAF+IINV  +GARG+GFW+P+KGLT+KL+S       ST++S L P+IWPGDS+
Sbjct: 364 GQLPSSAFQIINVIGDGARGLGFWTPQKGLTKKLNSVAVTNLYSTSESNLAPVIWPGDSS 423

Query: 296 SDPKGWEIPTNEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYA 355
           S PKGWEIPT  KKLR+ VPVK+GF++FVKVT DP T  T+V GY IDVF AV++ LPYA
Sbjct: 424 SVPKGWEIPTKGKKLRILVPVKEGFNEFVKVTRDPSTNTTTVRGYCIDVFDAVVKALPYA 483

Query: 356 VAYDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVS 415
           V Y++ P+  PDG+S+G+Y+DL+YQV+ GEFDAVVGDTTI+ NRS YVDFT PYTESGVS
Sbjct: 484 VTYEYTPFVNPDGSSAGTYDDLVYQVYTGEFDAVVGDTTIIANRSLYVDFTFPYTESGVS 543

Query: 416 MIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFRGPARHQVGT 475
           MIVPIKD+  +NAWVF++PLTWDLWVTS CFF+FIGFVVWVLEHR+NEDFRGP  HQ GT
Sbjct: 544 MIVPIKDNNSKNAWVFVKPLTWDLWVTSFCFFVFIGFVVWVLEHRINEDFRGPPSHQAGT 603

Query: 476 SFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDV 535
           +FWFSFSTMVF+ RERV+SNLAR VVI+WCFVVLIL QSYTASLTSLLTV QL PT+TDV
Sbjct: 604 AFWFSFSTMVFAHRERVVSNLARLVVIIWCFVVLILTQSYTASLTSLLTVQQLMPTVTDV 663

Query: 536 NLLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDE 595
           + LI   DNVGY +GSFVLGILK LGF E K  VYNS EEC+ELF KG+ NGGIAAAFDE
Sbjct: 664 HQLISNEDNVGYLQGSFVLGILKGLGFHESKFKVYNSTEECNELFVKGTRNGGIAAAFDE 723

Query: 596 IPYAKLLIGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDA 655
           +PY KL + Q+CSKYTMVEPTFKT GFGF FP  SPLV DVS+AIL+V +GD MK+I +A
Sbjct: 724 VPYIKLFLAQYCSKYTMVEPTFKTGGFGFVFPKRSPLVPDVSRAILDVIQGDDMKKIGEA 783

Query: 656 WFKKHSSCPDAGTVVSARSLGLNSFWGLFLIAGIAAILALIIFLAVFVHEHWNVLK--NS 713
           WF K SSCPD  T VS+ SL L SFWGLFLIAG A+ LAL+I+ A+F +EHW +++  +S
Sbjct: 784 WFGKQSSCPDPSTTVSSNSLSLRSFWGLFLIAGTASALALMIYGAMFTYEHWQIIRRSDS 843

Query: 714 ESSLLSRIRIFLRIFVSRDLSAHTFKDKGGIQVHGMGPTEASPDSRYPASPSSYSQHADS 773
           E+ + SRI   LRIF  +DL +HTF+            +EA+  S    SPS YS   D 
Sbjct: 844 EARIWSRIVHLLRIFDEKDLKSHTFRK-----------SEANEISMGAPSPSIYSVQTD- 891

Query: 774 HFLFYGEQGTPRTESGNSNHNPNSQAQAPPEIVSAVELTNPDQE 817
              F GEQGTP  E G    +PN + Q    +V  +EL N +Q+
Sbjct: 892 ---FPGEQGTPSAEYG----DPNPEEQPTQAVVLNIELVNSNQD 928

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255548642|ref|XP_002515377.1| glutamate receptor 2 plant, putative [Ricinus communis] gi|223545321|gb|EEF46826.1| glutamate receptor 2 plant, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224142031|ref|XP_002324363.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222865797|gb|EEF02928.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224142035|ref|XP_002324364.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222865798|gb|EEF02929.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224142043|ref|XP_002324368.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222865802|gb|EEF02933.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224142049|ref|XP_002324371.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222865805|gb|EEF02936.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255548632|ref|XP_002515372.1| glutamate receptor 2 plant, putative [Ricinus communis] gi|223545316|gb|EEF46821.1| glutamate receptor 2 plant, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359476446|ref|XP_003631841.1| PREDICTED: glutamate receptor 2.8-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224142027|ref|XP_002324361.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222865795|gb|EEF02926.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147787550|emb|CAN75545.1| hypothetical protein VITISV_032974 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query829
TAIR|locus:2066107952 GLR2.7 "glutamate receptor 2.7 0.905 0.788 0.518 9e-215
TAIR|locus:2066086947 GLR2.8 "glutamate receptor 2.8 0.901 0.788 0.534 1.9e-211
TAIR|locus:2066148940 GLR2.9 "glutamate receptor 2.9 0.895 0.789 0.514 2.6e-205
TAIR|locus:2047256920 GLR2.2 "glutamate receptor 2.2 0.808 0.728 0.537 9.7e-199
TAIR|locus:2181196901 GLR2.1 "glutamate receptor 2.1 0.800 0.736 0.529 1.5e-195
TAIR|locus:2047251895 GLR2.3 "glutamate receptor 2.3 0.806 0.747 0.515 1.8e-188
TAIR|locus:2206095933 GLR3.3 "glutamate receptor 3.3 0.800 0.711 0.365 2.6e-118
TAIR|locus:2207165959 GLR3.4 "AT1G05200" [Arabidopsi 0.797 0.689 0.365 1.3e-114
TAIR|locus:2122128912 GLUR2 "glutamate receptor 2" [ 0.794 0.722 0.358 4.6e-112
TAIR|locus:2081805903 GLR3.6 "glutamate receptor 3.6 0.796 0.730 0.351 2.4e-108
TAIR|locus:2066107 GLR2.7 "glutamate receptor 2.7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2060 (730.2 bits), Expect = 9.0e-215, Sum P(2) = 9.0e-215
 Identities = 405/781 (51%), Positives = 544/781 (69%)

Query:     3 LNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLA 62
             L+DSSQV AI AI+K+FGWR  V IYVDN++GE ++P LTDALQ +   V  R +I   A
Sbjct:   153 LDDSSQVKAIAAIVKSFGWRNVVAIYVDNEFGEGILPLLTDALQDVQAFVVNRCLIPQEA 212

Query:    63 TDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRT 122
              DDQI KELYKL TMQTRVF++HM P+LG R F+KA EIG+M +G VW++TDG+ NLL++
Sbjct:   213 NDDQILKELYKLMTMQTRVFVVHMPPTLGFRFFQKAREIGMMEEGYVWLLTDGVMNLLKS 272

Query:   123 LEP-SVTDSMQGVIGVRPYVPKTKALENFRVRWKRKFLQENPSLFDAELNIFGLLAYDAT 181
              E  S  ++MQGV+GVR ++PK+K L+NFR+RW++ F ++     D E+NIF L AYD+ 
Sbjct:   273 NERGSSLENMQGVLGVRSHIPKSKKLKNFRLRWEKMFPKKGN---DEEMNIFALRAYDSI 329

Query:   182 SALAVAVEKAGITGFGFDKTNVS-SNATDLEAFGISQNGPKLLQALSSIRFRGLTGDYIF 240
             +ALA+AVEK  I    +D    S +N T+L   G+S+ GP LL+ALS++RF GL G++  
Sbjct:   330 TALAMAVEKTNIKSLRYDHPIASGNNKTNLGTLGVSRYGPSLLKALSNVRFNGLAGEFEL 389

Query:   241 VDGQLQSSAFEIINV-NNGARGVGFWSPEKGXXXXXXXXXXXXXXXR--PIIWPGDSTSD 297
             ++GQL+SS F++IN+  +  R +G W P  G               R  P+IWPG S   
Sbjct:   390 INGQLESSVFDVINIIGSEERIIGLWRPSNGIVNAKSKNTTSVLGERLGPVIWPGKSKDV 449

Query:   298 PKGWEIPTNEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVA 357
             PKGW+IPTN K LRVG+PVKKGF +FV   IDP +   +  GY I++F+AV+++LPY+V 
Sbjct:   450 PKGWQIPTNGKMLRVGIPVKKGFLEFVDAKIDPISNAMTPTGYCIEIFEAVLKKLPYSVI 509

Query:   358 YDFVPYAQPDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMI 417
               ++ +  PD     +Y++++YQV+ G +DAVVGD TIV NRS YVDFTLPYTESGVSM+
Sbjct:   510 PKYIAFLSPDE----NYDEMVYQVYTGAYDAVVGDVTIVANRSLYVDFTLPYTESGVSMM 565

Query:   418 VPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFRGPARHQVGTSF 477
             VP+KD+K  N WVFL+P + DLWVT+ CFF+FIGF+VW+LEHRVN DFRGP  HQ+GTSF
Sbjct:   566 VPLKDNK--NTWVFLRPWSLDLWVTTACFFVFIGFIVWILEHRVNTDFRGPPHHQIGTSF 623

Query:   478 WFSFSTMVFSQRERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNL 537
             WF+FSTM F+ RE+V+SNLARFVV+VWCFVVL+LIQSYTA+LTS  TV  LQPT+T+   
Sbjct:   624 WFAFSTMNFAHREKVVSNLARFVVLVWCFVVLVLIQSYTANLTSFFTVKLLQPTVTNWKD 683

Query:   538 LIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSHEECDELFQKGSANGGIAAAFDEIP 597
             LIK   N+GYQ+G+FV  +LK  GFDE +L  + S  ECDELF    +NG I A+FDE+ 
Sbjct:   684 LIKFNKNIGYQRGTFVRELLKSQGFDESQLKPFGSAVECDELF----SNGTITASFDEVA 739

Query:   598 YAKLLIGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWF 657
             Y K+++ Q+ SKYTMVEP+FKTAGFGF FP  SPL  DVS+AILNVT+G++M+ IE+ WF
Sbjct:   740 YIKVILSQNSSKYTMVEPSFKTAGFGFVFPKKSPLTDDVSRAILNVTQGEEMQHIENKWF 799

Query:   658 KKHSSCPDAGTVVSARSLGLNSFWXXXXXXXXXXXXXXXXXXXVFVHEHWNVL-KNSESS 716
             KK ++CPD  T +S+  L L+SFW                    F++EH + L  +SE+S
Sbjct:   800 KKPNNCPDLNTSLSSNHLSLSSFWGLFLIAGIASFLALLIFVANFLYEHKHTLFDDSENS 859

Query:   717 LLSRIRIFLRIFVSRDLSAHTFKDKGGIQVHGMG-P-TE--ASP----DSRYPASPSSYS 768
                +++  +R F  +D+ +H FK+     VH +  P T+  +SP     +  P SP  Y 
Sbjct:   860 FRGKLKFLVRNFDEKDIKSHMFKENA---VHNVSSPITQGSSSPLTDQSTPLPRSPEQYR 916

Query:   769 Q 769
             +
Sbjct:   917 E 917
GO:0004970 "ionotropic glutamate receptor activity" evidence=IEA
GO:0005215 "transporter activity" evidence=IEA
GO:0005217 "intracellular ligand-gated ion channel activity" evidence=ISS
GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006810 "transport" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0006874 "cellular calcium ion homeostasis" evidence=NAS
GO:0009416 "response to light stimulus" evidence=NAS
GO:0005773 "vacuole" evidence=IDA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
TAIR|locus:2066086 GLR2.8 "glutamate receptor 2.8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066148 GLR2.9 "glutamate receptor 2.9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047256 GLR2.2 "glutamate receptor 2.2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2181196 GLR2.1 "glutamate receptor 2.1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047251 GLR2.3 "glutamate receptor 2.3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206095 GLR3.3 "glutamate receptor 3.3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207165 GLR3.4 "AT1G05200" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122128 GLUR2 "glutamate receptor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081805 GLR3.6 "glutamate receptor 3.6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8LGN0GLR27_ARATHNo assigned EC number0.54410.89740.7815yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XVIII.2090.1
glutamate-gated kainate-type ion channel receptor subunit GluR5 (867 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query829
pfam00060268 pfam00060, Lig_chan, Ligand-gated ion channel 6e-80
cd06366350 cd06366, PBP1_GABAb_receptor, Ligand-binding domai 9e-72
pfam01094343 pfam01094, ANF_receptor, Receptor family ligand bi 3e-42
cd06350348 cd06350, PBP1_GPCR_family_C_like, Ligand-binding d 1e-31
smart00079133 smart00079, PBPe, Eukaryotic homologues of bacteri 2e-26
cd06269298 cd06269, PBP1_glutamate_receptors_like, Family C G 3e-20
cd04509299 cd04509, PBP1_ABC_transporter_GCPR_C_like, Family 3e-11
cd06351328 cd06351, PBP1_iGluR_N_LIVBP_like, N-terminal leuci 6e-09
pfam13458343 pfam13458, Peripla_BP_6, Periplasmic binding prote 4e-08
COG0683366 COG0683, LivK, ABC-type branched-chain amino acid 3e-07
cd06367362 cd06367, PBP1_iGluR_NMDA, N-terminal leucine/isole 6e-07
cd06368324 cd06368, PBP1_iGluR_non_NMDA_like, N-terminal leuc 6e-07
cd06380382 cd06380, PBP1_iGluR_AMPA, N-terminal leucine/isole 2e-06
pfam00497220 pfam00497, SBP_bac_3, Bacterial extracellular solu 3e-06
smart00062219 smart00062, PBPb, Bacterial periplasmic substrate- 4e-06
COG0834275 COG0834, HisJ, ABC-type amino acid transport/signa 5e-06
cd00134218 cd00134, PBPb, Bacterial periplasmic transport sys 9e-06
cd00134218 cd00134, PBPb, Bacterial periplasmic transport sys 1e-05
cd06268298 cd06268, PBP1_ABC_transporter_LIVBP_like, Periplas 3e-05
pfam00497220 pfam00497, SBP_bac_3, Bacterial extracellular solu 5e-05
cd06345344 cd06345, PBP1_ABC_ligand_binding_like_10, Type I p 2e-04
cd06346312 cd06346, PBP1_ABC_ligand_binding_like_11, Type I p 3e-04
cd06379377 cd06379, PBP1_iGluR_NMDA_NR1, N-terminal leucine/i 0.001
cd06342334 cd06342, PBP1_ABC_LIVBP_like, Type I periplasmic l 0.003
>gnl|CDD|215685 pfam00060, Lig_chan, Ligand-gated ion channel Back     alignment and domain information 
 Score =  257 bits (660), Expect = 6e-80
 Identities = 85/269 (31%), Positives = 131/269 (48%), Gaps = 16/269 (5%)

Query: 438 DLWVTSGCFFIFIGFVVWVLEHRVNEDFRG----PARHQVGTSFWFSFSTMV-FSQRERV 492
           ++W+     ++ +G V+++LE     ++RG    P +  +  S WFSF  +V    RE  
Sbjct: 1   EVWLCILAAYLLVGVVLFLLERFSPYEWRGPPEEPNQFTLSNSLWFSFGALVQQGHRELP 60

Query: 493 ISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGDNVGYQ---- 548
            S   R +V VW F  LIL+ SYTA+L + LTV+++Q  I  +  L K+ + +GY     
Sbjct: 61  RSLSGRILVGVWWFFALILLSSYTANLAAFLTVERMQSPIQSLEDLAKQ-NKIGYGTLRG 119

Query: 549 ---KGSFVLGILKQLGFDERKLVVYNSH---EECDELFQKGSANGGIAAAFDEIPYAKLL 602
                 F              ++ +      E  +E  Q+     G+ A   E  Y +  
Sbjct: 120 GSTFEFFKESKNPTYRRMWEYMISFKGEVNVESYEEGVQRVRKGNGLYAFLMESAYLEYE 179

Query: 603 IGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSS 662
           + +   K T V   F T G+G AFP  SPL   +S+AIL + E  +++++E+ W+KK   
Sbjct: 180 VARDPCKLTTVGEVFGTKGYGIAFPKGSPLRDKLSRAILELRESGELQKLENKWWKKKGE 239

Query: 663 CPDAGTVVSARSLGLNSFWGLFLIAGIAA 691
           C    T VS+  LGL SF GLFLI GI  
Sbjct: 240 CSLKSTAVSSSQLGLESFAGLFLILGIGL 268

This family includes the four transmembrane regions of the ionotropic glutamate receptors and NMDA receptors. Length = 268
>gnl|CDD|107361 cd06366, PBP1_GABAb_receptor, Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA) Back     alignment and domain information
>gnl|CDD|216296 pfam01094, ANF_receptor, Receptor family ligand binding region Back     alignment and domain information
>gnl|CDD|153138 cd06350, PBP1_GPCR_family_C_like, Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs) Back     alignment and domain information
>gnl|CDD|197504 smart00079, PBPe, Eukaryotic homologues of bacterial periplasmic substrate binding proteins Back     alignment and domain information
>gnl|CDD|153137 cd06269, PBP1_glutamate_receptors_like, Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors Back     alignment and domain information
>gnl|CDD|107261 cd04509, PBP1_ABC_transporter_GCPR_C_like, Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems Back     alignment and domain information
>gnl|CDD|107346 cd06351, PBP1_iGluR_N_LIVBP_like, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs) Back     alignment and domain information
>gnl|CDD|222144 pfam13458, Peripla_BP_6, Periplasmic binding protein Back     alignment and domain information
>gnl|CDD|223755 COG0683, LivK, ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|107362 cd06367, PBP1_iGluR_NMDA, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors Back     alignment and domain information
>gnl|CDD|107363 cd06368, PBP1_iGluR_non_NMDA_like, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors Back     alignment and domain information
>gnl|CDD|107375 cd06380, PBP1_iGluR_AMPA, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor Back     alignment and domain information
>gnl|CDD|215950 pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3 Back     alignment and domain information
>gnl|CDD|214497 smart00062, PBPb, Bacterial periplasmic substrate-binding proteins Back     alignment and domain information
>gnl|CDD|223904 COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|238078 cd00134, PBPb, Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions Back     alignment and domain information
>gnl|CDD|238078 cd00134, PBPb, Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions Back     alignment and domain information
>gnl|CDD|107263 cd06268, PBP1_ABC_transporter_LIVBP_like, Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily Back     alignment and domain information
>gnl|CDD|215950 pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3 Back     alignment and domain information
>gnl|CDD|107340 cd06345, PBP1_ABC_ligand_binding_like_10, Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>gnl|CDD|107341 cd06346, PBP1_ABC_ligand_binding_like_11, Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>gnl|CDD|107374 cd06379, PBP1_iGluR_NMDA_NR1, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor Back     alignment and domain information
>gnl|CDD|107337 cd06342, PBP1_ABC_LIVBP_like, Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 829
KOG1054897 consensus Glutamate-gated AMPA-type ion channel re 100.0
KOG4440993 consensus NMDA selective glutamate-gated ion chann 100.0
KOG1053 1258 consensus Glutamate-gated NMDA-type ion channel re 100.0
KOG1052656 consensus Glutamate-gated kainate-type ion channel 100.0
cd06390364 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucin 100.0
cd06387372 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucin 100.0
cd06365469 PBP1_Pheromone_receptor Ligand-binding domain of t 100.0
cd06364510 PBP1_CaSR Ligand-binding domain of the CaSR calciu 100.0
cd06391400 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/v 100.0
KOG1056878 consensus Glutamate-gated metabotropic ion channel 100.0
cd06392400 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/v 100.0
cd06376463 PBP1_mGluR_groupIII Ligand-binding domain of the g 100.0
cd06375458 PBP1_mGluR_groupII Ligand binding domain of the gr 100.0
cd06374472 PBP1_mGluR_groupI Ligand binding domain of the gro 99.98
cd06379377 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/ 99.97
cd06361403 PBP1_GPC6A_like Ligand-binding domain of the promi 99.97
cd06367362 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/vali 99.97
cd06362452 PBP1_mGluR Ligand binding domain of the metabotrop 99.97
cd06388371 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucin 99.97
cd06389370 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucin 99.97
cd06378362 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/ 99.96
cd06393384 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isol 99.96
cd06380382 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/vali 99.95
cd06386387 PBP1_NPR_C_like Ligand-binding domain of type C na 99.95
cd06363410 PBP1_Taste_receptor Ligand-binding domain of the T 99.94
PF01094348 ANF_receptor: Receptor family ligand binding regio 99.94
cd06385405 PBP1_NPR_A Ligand-binding domain of type A natriur 99.94
cd06370404 PBP1_Speract_GC_like Ligand-binding domain of memb 99.93
cd06372391 PBP1_GC_G_like Ligand-binding domain of membrane g 99.92
cd06371382 PBP1_sensory_GC_DEF_like Ligand-binding domain of 99.92
cd06384399 PBP1_NPR_B Ligand-binding domain of type B natriur 99.91
cd06373396 PBP1_NPR_like Ligand binding domain of natriuretic 99.91
cd06352389 PBP1_NPR_GC_like Ligand-binding domain of membrane 99.91
cd06394333 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleu 99.91
cd06366350 PBP1_GABAb_receptor Ligand-binding domain of GABAb 99.91
cd06381363 PBP1_iGluR_delta_like N-terminal leucine/isoleucin 99.9
PRK10797302 glutamate and aspartate transporter subunit; Provi 99.88
PRK09495247 glnH glutamine ABC transporter periplasmic protein 99.88
cd06382327 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/v 99.88
cd06383368 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine 99.87
PRK11260266 cystine transporter subunit; Provisional 99.86
cd06377382 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/ 99.86
cd06368324 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleu 99.86
PF00497225 SBP_bac_3: Bacterial extracellular solute-binding 99.85
PRK11917259 bifunctional adhesin/ABC transporter aspartate/glu 99.84
PRK15007243 putative ABC transporter arginine-biding protein; 99.84
PRK15010260 ABC transporter lysine/arginine/ornithine binding 99.83
TIGR02995275 ectoine_ehuB ectoine/hydroxyectoine ABC transporte 99.83
TIGR01096250 3A0103s03R lysine-arginine-ornithine-binding perip 99.83
PRK15437259 histidine ABC transporter substrate-binding protei 99.81
cd06342334 PBP1_ABC_LIVBP_like Type I periplasmic ligand-bind 99.8
PRK09959 1197 hybrid sensory histidine kinase in two-component r 99.78
cd06350348 PBP1_GPCR_family_C_like Ligand-binding domain of m 99.78
PRK10859482 membrane-bound lytic transglycosylase F; Provision 99.77
cd06351328 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleuc 99.76
PF00060148 Lig_chan: Ligand-gated ion channel; InterPro: IPR0 99.74
TIGR03870246 ABC_MoxJ methanol oxidation system protein MoxJ. T 99.73
cd06338345 PBP1_ABC_ligand_binding_like_5 Type I periplasmic 99.72
PRK15404369 leucine ABC transporter subunit substrate-binding 99.72
COG0834275 HisJ ABC-type amino acid transport/signal transduc 99.71
cd06346312 PBP1_ABC_ligand_binding_like_11 Type I periplasmic 99.7
cd06345344 PBP1_ABC_ligand_binding_like_10 Type I periplasmic 99.7
TIGR02285268 conserved hypothetical protein. Members of this fa 99.69
KOG1055865 consensus GABA-B ion channel receptor subunit GABA 99.68
cd06348344 PBP1_ABC_ligand_binding_like_13 Type I periplasmic 99.68
TIGR03871232 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associa 99.68
PRK09959 1197 hybrid sensory histidine kinase in two-component r 99.67
cd00134218 PBPb Bacterial periplasmic transport systems use m 99.66
cd06347334 PBP1_ABC_ligand_binding_like_12 Type I periplasmic 99.65
cd06360336 PBP1_alkylbenzenes_like Type I periplasmic binding 99.64
smart00062219 PBPb Bacterial periplasmic substrate-binding prote 99.64
cd06340347 PBP1_ABC_ligand_binding_like_6 Type I periplasmic 99.63
cd06355348 PBP1_FmdD_like Periplasmic component (FmdD) of an 99.61
cd06344332 PBP1_ABC_ligand_binding_like_9 Type I periplasmic 99.6
cd06330346 PBP1_Arsenic_SBP_like Periplasmic solute-binding d 99.59
cd06329342 PBP1_SBP_like_3 Periplasmic solute-binding domain 99.59
cd06336347 PBP1_ABC_ligand_binding_like_3 Type I periplasmic 99.59
cd06369380 PBP1_GC_C_enterotoxin_receptor Ligand-binding doma 99.59
cd06269298 PBP1_glutamate_receptors_like Family C G-protein c 99.58
cd06331333 PBP1_AmiC_like Type I periplasmic components of am 99.57
cd06327334 PBP1_SBP_like_1 Periplasmic solute-binding domain 99.57
PF13458343 Peripla_BP_6: Periplasmic binding protein; PDB: 4E 99.57
cd06332333 PBP1_aromatic_compounds_like Type I periplasmic bi 99.55
cd06359333 PBP1_Nba_like Type I periplasmic binding component 99.55
TIGR03407359 urea_ABC_UrtA urea ABC transporter, urea binding p 99.54
TIGR03669374 urea_ABC_arch urea ABC transporter, substrate-bind 99.54
cd06349340 PBP1_ABC_ligand_binding_like_14 Type I periplasmic 99.53
cd06343362 PBP1_ABC_ligand_binding_like_8 Type I periplasmic 99.53
cd06357360 PBP1_AmiC Periplasmic binding domain of amidase (A 99.52
cd06358333 PBP1_NHase Type I periplasmic-binding protein of t 99.52
COG0683366 LivK ABC-type branched-chain amino acid transport 99.51
cd06328333 PBP1_SBP_like_2 Periplasmic solute-binding domain 99.48
cd06335347 PBP1_ABC_ligand_binding_like_2 Type I periplasmic 99.45
cd06356334 PBP1_Amide_Urea_BP_like Periplasmic component (Fmd 99.41
cd06339336 PBP1_YraM_LppC_lipoprotein_like Periplasmic bindin 99.38
cd06334351 PBP1_ABC_ligand_binding_like_1 Type I periplasmic 99.35
cd06337357 PBP1_ABC_ligand_binding_like_4 Type I periplasmic 99.35
smart00079134 PBPe Eukaryotic homologues of bacterial periplasmi 99.32
COG4623473 Predicted soluble lytic transglycosylase fused to 99.31
cd04509299 PBP1_ABC_transporter_GCPR_C_like Family C of G-pro 99.23
cd06326336 PBP1_STKc_like Type I periplasmic binding domain o 99.23
PF13433363 Peripla_BP_5: Periplasmic binding protein domain; 99.16
TIGR03863347 PQQ_ABC_bind ABC transporter, substrate binding pr 99.08
cd06341341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic 99.07
cd06333312 PBP1_ABC-type_HAAT_like Type I periplasmic binding 99.05
cd06268298 PBP1_ABC_transporter_LIVBP_like Periplasmic bindin 98.98
TIGR01098254 3A0109s03R phosphate/phosphite/phosphonate ABC tra 98.89
PF1061365 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- 98.84
PRK00489287 hisG ATP phosphoribosyltransferase; Reviewed 98.82
TIGR03431288 PhnD phosphonate ABC transporter, periplasmic phos 98.13
cd01391269 Periplasmic_Binding_Protein_Type_1 Type 1 periplas 97.74
PRK11553314 alkanesulfonate transporter substrate-binding subu 97.46
PF12974243 Phosphonate-bd: ABC transporter, phosphonate, peri 97.25
TIGR01729300 taurine_ABC_bnd taurine ABC transporter, periplasm 96.33
PF13379252 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_ 96.26
TIGR03427328 ABC_peri_uca ABC transporter periplasmic binding p 96.22
PF03466209 LysR_substrate: LysR substrate binding domain; Int 96.03
PF04348536 LppC: LppC putative lipoprotein; InterPro: IPR0074 95.86
COG3221299 PhnD ABC-type phosphate/phosphonate transport syst 95.81
TIGR02122320 TRAP_TAXI TRAP transporter solute receptor, TAXI f 95.69
cd05466197 PBP2_LTTR_substrate The substrate binding domain o 95.63
PF09084216 NMT1: NMT1/THI5 like; InterPro: IPR015168 This ent 95.55
cd08459201 PBP2_DntR_NahR_LinR_like The C-terminal substrate 95.39
TIGR01728288 SsuA_fam ABC transporter, substrate-binding protei 95.27
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 95.25
cd08442193 PBP2_YofA_SoxR_like The C-terminal substrate bindi 95.24
cd08468202 PBP2_Pa0477 The C-terminal substrate biniding doma 95.04
cd08418201 PBP2_TdcA The C-terminal substrate binding domain 94.92
cd08463203 PBP2_DntR_like_4 The C-terminal substrate binding 94.86
cd08438197 PBP2_CidR The C-terminal substrate binding domain 94.68
cd08421198 PBP2_LTTR_like_1 The C-terminal substrate binding 94.42
cd08440197 PBP2_LTTR_like_4 TThe C-terminal substrate binding 94.41
PRK11480320 tauA taurine transporter substrate binding subunit 94.21
cd08433198 PBP2_Nac The C-teminal substrate binding domain of 94.2
cd08412198 PBP2_PAO1_like The C-terminal substrate-binding do 94.18
cd08461198 PBP2_DntR_like_3 The C-terminal substrate binding 94.08
PRK11151305 DNA-binding transcriptional regulator OxyR; Provis 94.0
cd08466200 PBP2_LeuO The C-terminal substrate binding domain 93.97
PRK12679316 cbl transcriptional regulator Cbl; Reviewed 93.96
cd08411200 PBP2_OxyR The C-terminal substrate-binding domain 93.92
cd08415196 PBP2_LysR_opines_like The C-terminal substrate-dom 93.77
TIGR00363258 lipoprotein, YaeC family. This family of putative 93.75
PRK12684313 transcriptional regulator CysB-like protein; Revie 93.68
PRK11233305 nitrogen assimilation transcriptional regulator; P 93.64
CHL00180305 rbcR LysR transcriptional regulator; Provisional 93.63
cd08426199 PBP2_LTTR_like_5 The C-terminal substrate binding 93.63
cd08434195 PBP2_GltC_like The substrate binding domain of Lys 93.41
cd08417200 PBP2_Nitroaromatics_like The C-terminal substrate 93.37
PRK11242296 DNA-binding transcriptional regulator CynR; Provis 93.27
cd08441198 PBP2_MetR The C-terminal substrate binding domain 93.01
cd08435201 PBP2_GbpR The C-terminal substrate binding domain 92.77
PRK09791302 putative DNA-binding transcriptional regulator; Pr 92.72
cd08464200 PBP2_DntR_like_2 The C-terminal substrate binding 92.68
cd08419197 PBP2_CbbR_RubisCO_like The C-terminal substrate bi 92.64
cd08420201 PBP2_CysL_like C-terminal substrate binding domain 92.56
cd08460200 PBP2_DntR_like_1 The C-terminal substrate binding 92.55
cd08462200 PBP2_NodD The C-terminal substsrate binding domain 92.33
cd08465200 PBP2_ToxR The C-terminal substrate binding domain 92.21
TIGR02424300 TF_pcaQ pca operon transcription factor PcaQ. Memb 92.13
PRK12682309 transcriptional regulator CysB-like protein; Revie 92.0
cd08425197 PBP2_CynR The C-terminal substrate-binding domain 91.97
cd08457196 PBP2_OccR The C-terminal substrate-domain of LysR- 91.88
PRK10341312 DNA-binding transcriptional activator TdcA; Provis 91.87
cd08413198 PBP2_CysB_like The C-terminal substrate domain of 91.87
cd08429204 PBP2_NhaR The C-terminal substrate binding domain 91.77
PRK12683309 transcriptional regulator CysB-like protein; Revie 91.77
PRK12680327 transcriptional regulator CysB-like protein; Revie 91.77
cd08430199 PBP2_IlvY The C-terminal substrate binding of LysR 91.64
cd08436194 PBP2_LTTR_like_3 The C-terminal substrate binding 91.63
TIGR00787257 dctP tripartite ATP-independent periplasmic transp 91.6
cd08458196 PBP2_NocR The C-terminal substrate-domain of LysR- 91.53
PRK11482317 putative DNA-binding transcriptional regulator; Pr 91.47
cd08456196 PBP2_LysR The C-terminal substrate binding domain 91.46
cd08444198 PBP2_Cbl The C-terminal substrate binding domain o 91.35
cd08443198 PBP2_CysB The C-terminal substrate domain of LysR- 91.28
PRK10837290 putative DNA-binding transcriptional regulator; Pr 91.1
cd01536267 PBP1_ABC_sugar_binding_like Periplasmic sugar-bind 91.1
PRK12681324 cysB transcriptional regulator CysB; Reviewed 90.95
cd01537264 PBP1_Repressors_Sugar_Binding_like Ligand-binding 90.67
cd08427195 PBP2_LTTR_like_2 The C-terminal substrate binding 90.61
cd08451199 PBP2_BudR The C-terminal substrate binding domain 90.53
cd08437198 PBP2_MleR The substrate binding domain of LysR-typ 90.49
PRK11063271 metQ DL-methionine transporter substrate-binding s 90.26
cd08469221 PBP2_PnbR The C-terminal substrate binding domain 90.2
cd08467200 PBP2_SyrM The C-terminal substrate binding of LysR 90.14
cd08416199 PBP2_MdcR The C-terminal substrate-binding domian 90.09
cd08449197 PBP2_XapR The C-terminal substrate binding domain 89.95
cd08446198 PBP2_Chlorocatechol The C-terminal substrate bindi 89.85
PRK11013309 DNA-binding transcriptional regulator LysR; Provis 89.8
PRK09508314 leuO leucine transcriptional activator; Reviewed 89.7
cd06267264 PBP1_LacI_sugar_binding_like Ligand binding domain 89.2
PRK15421317 DNA-binding transcriptional regulator MetR; Provis 89.15
PF12727193 PBP_like: PBP superfamily domain; InterPro: IPR024 88.99
cd08445203 PBP2_BenM_CatM_CatR The C-terminal substrate bindi 88.72
cd06282266 PBP1_GntR_like_2 Ligand-binding domain of putative 88.61
cd08486198 PBP2_CbnR The C-terminal substrate binding domain 88.31
cd06273268 PBP1_GntR_like_1 This group includes the ligand-bi 88.22
cd08414197 PBP2_LTTR_aromatics_like The C-terminal substrate 88.18
PRK11062296 nhaR transcriptional activator NhaR; Provisional 87.94
cd08450196 PBP2_HcaR The C-terminal substrate binding domain 87.88
COG1910223 Periplasmic molybdate-binding protein/domain [Inor 87.49
cd08448197 PBP2_LTTR_aromatics_like_2 The C-terminal substrat 87.1
PF13531230 SBP_bac_11: Bacterial extracellular solute-binding 86.68
cd08423200 PBP2_LTTR_like_6 The C-terminal substrate binding 85.99
TIGR01256216 modA molybdenum ABC transporter, periplasmic molyb 85.47
TIGR02990239 ectoine_eutA ectoine utilization protein EutA. Mem 85.41
PF03480286 SBP_bac_7: Bacterial extracellular solute-binding 85.14
PRK11074300 putative DNA-binding transcriptional regulator; Pr 85.11
PRK11716269 DNA-binding transcriptional regulator IlvY; Provis 84.67
cd08453200 PBP2_IlvR The C-terminal substrate binding domain 84.18
cd08485198 PBP2_ClcR The C-terminal substrate binding domain 84.09
PF13377160 Peripla_BP_3: Periplasmic binding protein-like dom 83.57
PRK09860383 putative alcohol dehydrogenase; Provisional 83.56
TIGR03339279 phn_lysR aminoethylphosphonate catabolism associat 83.19
cd06298268 PBP1_CcpA_like Ligand-binding domain of the catabo 83.1
PRK09906296 DNA-binding transcriptional regulator HcaR; Provis 82.49
cd06288269 PBP1_sucrose_transcription_regulator Ligand-bindin 82.39
cd01545270 PBP1_SalR Ligand-binding domain of DNA transcripti 81.34
COG0725258 ModA ABC-type molybdate transport system, periplas 80.93
COG0715335 TauA ABC-type nitrate/sulfonate/bicarbonate transp 80.82
COG1638332 DctP TRAP-type C4-dicarboxylate transport system, 80.64
PRK15454395 ethanol dehydrogenase EutG; Provisional 80.62
PF14503232 YhfZ_C: YhfZ C-terminal domain; PDB: 2OZZ_B. 80.62
TIGR01481329 ccpA catabolite control protein A. Catabolite cont 80.03
cd06271268 PBP1_AglR_RafR_like Ligand-binding domain of DNA t 80.02
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-83  Score=669.63  Aligned_cols=670  Identities=20%  Similarity=0.315  Sum_probs=548.2

Q ss_pred             HHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcCCCeEEEEEcC
Q 043276            8 QVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML   87 (829)
Q Consensus         8 q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~~arViIv~~~   87 (829)
                      ...|+++++.||+|.+++.+| |.+-|...++++.+.+.+++..|.....-.. .+..+++.++..|...+.+-+++.|.
T Consensus       138 l~~al~s~i~hy~W~~fv~ly-D~~rg~s~Lqai~~~a~~~nw~VtA~~v~~~-~d~~~yr~~f~~l~~r~e~rv~iDce  215 (897)
T KOG1054|consen  138 LKGALLSLIDHYKWEKFVYLY-DTDRGLSILQAIMEAAAQNNWQVTAINVGNI-NDVKEYRMLFEMLDRRQENRVLIDCE  215 (897)
T ss_pred             HHHHHHHHHHhcccceEEEEE-cccchHHHHHHHHHHHHhcCceEEEEEcCCc-ccHHHHHHHHHHHhccccceEEEEcc
Confidence            346899999999999999999 8888999999999999999999987654322 23456888888888889999999999


Q ss_pred             hhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEeccCCChhHHHHHHHHHHhhcccCCCCCc
Q 043276           88 PSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVPKTKALENFRVRWKRKFLQENPSLFD  167 (829)
Q Consensus        88 ~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~F~~~w~~~~~~~~~~~~~  167 (829)
                      .+....++.++.+.|-...+|++|+.+---.  +...........++.||++...+.|-.+.|.++|++.-..++++...
T Consensus       216 ~~~~~~il~q~i~~~k~~~~YHYvlaNl~f~--d~dl~~f~~g~aNitgFqivn~~~~~~~k~~~~~~~l~~~~~~g~~~  293 (897)
T KOG1054|consen  216 SERRNRILLQVIELGKHVKGYHYVLANLGFT--DIDLERFQHGGANITGFQIVNKNNPMVKKFIQRWKELDEREYPGASN  293 (897)
T ss_pred             cHHHHHHHHHHHHHhhhccceEEEEeeCCCc--hhhHHHHhcCCcceeEEEEecCCChHHHHHHHHHhhhcccccCCCCC
Confidence            9999999999999887778999999763211  11111233445667899999999999999999999988887887776


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCc--cccCCCChHHHHHHHhccceecccccEEEe-cCc
Q 043276          168 AELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLE--AFGISQNGPKLLQALSSIRFRGLTGDYIFV-DGQ  244 (829)
Q Consensus       168 ~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~l~~~L~~~~f~G~tG~~~F~-~G~  244 (829)
                      ..+..-++..|||+..+|+|++.+..+..+..+.   +...||.  ....|..|..+.++|+++.++|+||+++|| .|.
T Consensus       294 ~~~k~tsAlthDailV~~eaf~~~~~q~~~~~rR---G~~GD~~an~~~p~~qG~~I~ralk~v~~eGLTGniqFd~~G~  370 (897)
T KOG1054|consen  294 DPIKYTSALTHDAILVMAEAFRSLRRQRIDISRR---GNAGDCLANPAVPWEQGIDIERALKQVQVEGLTGNIQFDKYGR  370 (897)
T ss_pred             CCcchhhhhhhhHHHHHHHHHHHHHHhhhchhcc---CCCccccCCCCCchhcchhHHHHHHheeecccccceeecccCc
Confidence            6677778999999999999999987665433222   1224443  245678899999999999999999999998 999


Q ss_pred             cccceEEEEEcc-CCcEEEEEecCCCCcccccCCCccccCCccceecCCCCCCCCCCc-ccCCCCceEEEecccccCccc
Q 043276          245 LQSSAFEIINVN-NGARGVGFWSPEKGLTQKLSSNSTTKSKLRPIIWPGDSTSDPKGW-EIPTNEKKLRVGVPVKKGFSD  322 (829)
Q Consensus       245 ~~~~~y~I~n~~-~g~~~VG~w~~~~g~~~~l~~~~~~~~~~~~i~Wpg~~~~~P~~~-~~p~~~~~lrv~v~~~~~~~p  322 (829)
                      +.+-..+|+.+. ++.+++|+|....++....+                   ..+.+. ......++..|......|   
T Consensus       371 R~Nyt~~i~elk~~~~rk~~~W~e~~~fv~~~t-------------------~a~~~~d~~~~~n~tvvvttiL~sp---  428 (897)
T KOG1054|consen  371 RTNYTIDIVELKSNGSRKVGYWNEGEGFVPGST-------------------VAQSRNDQASKENRTVVVTTILESP---  428 (897)
T ss_pred             cccceEEEEEeccCCcceeeeecccCceeeccc-------------------cccccccccccccceEEEEEecCCc---
Confidence            988788899999 89999999998888664321                   001111 111223444444444444   


Q ss_pred             eEEEeec--CCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCCC--CCCC-hhHHHHhHhcCcccEEEecccccc
Q 043276          323 FVKVTID--PKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDGT--SSGS-YNDLIYQVFLGEFDAVVGDTTIVF  397 (829)
Q Consensus       323 ~~~~~~~--~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g~--~ng~-~~~li~~l~~g~~Di~~~~~~it~  397 (829)
                      |++..++  ...++.++.|||+||+.+||++.++++++.++..+ .+|.  +.++ |+||+++|..|++|++++++|||.
T Consensus       429 yvm~kkn~~~~egn~ryEGyCvdLa~~iAkhi~~~Y~l~iv~dg-kyGardaD~k~WnGMvGeLv~grAdiavApLTIt~  507 (897)
T KOG1054|consen  429 YVMLKKNHEQLEGNERYEGYCVDLAAEIAKHIGIKYKLFIVGDG-KYGARDADTKIWNGMVGELVYGRADIAVAPLTITL  507 (897)
T ss_pred             hhHHHhhHHHhcCCcccceeHHHHHHHHHHhcCceEEEEEecCC-cccccCCCcccccchhHHHhcCccceEEeeeeeeh
Confidence            4554443  23678899999999999999999986665555432 3332  4555 999999999999999999999999


Q ss_pred             ccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCCCC------Cc--
Q 043276          398 NRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFRG------PA--  469 (829)
Q Consensus       398 ~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~------~~--  469 (829)
                      +|++.+|||.||+..|+++|.++|+...+..+.||.|+..++|++++..++.+++++++..|+++.+|+-      +.  
T Consensus       508 ~REeviDFSKPfMslGISIMIKKPqKsk~gVFSFldPLa~eIWm~ivfaYiGVSvvlFLVSrFSPYEwh~Ee~~rg~~t~  587 (897)
T KOG1054|consen  508 VREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFERGRFTP  587 (897)
T ss_pred             hhhhhhccccchhhcCeEEEEeCcccCCCCeeeecchhHHHHHHHHHHHHhcceEEEEEEeccCchheeccccccCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999877642      11  


Q ss_pred             -----cCccchhHHHHHHHhhhcCc-cccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhCCC
Q 043276          470 -----RHQVGTSFWFSFSTMVFSQR-ERVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRGD  543 (829)
Q Consensus       470 -----~~~~~~~~~~~~~~l~~~~~-~~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~~~  543 (829)
                           ..++.|++||+++++++||- ..|+|.++|++..+||||+|||.++|||||++|||++++.+||++.+||.++.+
T Consensus       588 ~~~~NeFgifNsLWFsLgAFMQQG~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLTvErMvsPIESaEDLAkQte  667 (897)
T KOG1054|consen  588 SDPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTE  667 (897)
T ss_pred             CCCCccchhhHHHHHHHHHHHhcCCCCCccccccceeccchhhhhhhhhhhhhhHHHHHHhHHhhcCcchhHHHHhhcce
Confidence                 23577999999999999995 578999999999999999999999999999999999999999999999999887


Q ss_pred             -cEEEEeCchHHHHHHhcCCC----------ccc-eeecCChHHHHHHHhcCCcCCceeEEEcchhHHHHHHhc-CCCce
Q 043276          544 -NVGYQKGSFVLGILKQLGFD----------ERK-LVVYNSHEECDELFQKGSANGGIAAAFDEIPYAKLLIGQ-HCSKY  610 (829)
Q Consensus       544 -~vg~~~~s~~~~~l~~~~~~----------~~~-~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~-~c~~l  610 (829)
                       .+|+..+....+++++...+          ... -+.+.+..|.++++++.+   |-+|++.|...-+|...+ .|+ -
T Consensus       668 IaYGt~~~GSTkeFFr~Skiavy~kMW~yM~SaepsVFv~t~aeGv~rVRksK---GkyAfLLEsTmNey~eqRkPCD-T  743 (897)
T KOG1054|consen  668 IAYGTLDSGSTKEFFRRSKIAVYEKMWTYMKSAEPSVFVRTTAEGVARVRKSK---GKYAFLLESTMNEYIEQRKPCD-T  743 (897)
T ss_pred             eeeeecCCCchHHHHhhhhHHHHHHHHHHHhcCCcceeeehhhhHHHHHHhcC---CceEeehHhhhhhhhhccCCcc-c
Confidence             68888888778887642211          011 134456677888887655   689999999888887654 597 5


Q ss_pred             EEeCcccccCCceeeecCCCCchhhHHHHHHhhhccChhHHHHHHHccCCCCCCCCC--CccccccccccchhHHHHHHH
Q 043276          611 TMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPDAG--TVVSARSLGLNSFWGLFLIAG  688 (829)
Q Consensus       611 ~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~~w~~~~~~c~~~~--~~~~~~~L~l~~~~g~f~il~  688 (829)
                      +.||..+.+.+||+|.||||.|+..+|.|++.|.|.|+++++++|||.+++.|....  ..++...|+|.+++|+||||.
T Consensus       744 MKVGgNLds~GYGiATp~Gsslr~~vNLAvLkL~E~G~LdKLkNKWWYDkGeC~sg~~ds~~ktsaLsLSnVAGvFYIL~  823 (897)
T KOG1054|consen  744 MKVGGNLDSKGYGIATPKGSSLRNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGDSKDKTSALSLSNVAGVFYILV  823 (897)
T ss_pred             eecccccCCcceeecCCCCcccccchhhhhhhhcccchHHHhhhhhcccccccCCCCCCCCcchhhcchhhccceeeeeh
Confidence            678999999999999999999999999999999999999999999999999999876  344557999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccc
Q 043276          689 IAAILALIIFLAVFVHEHWNVLK  711 (829)
Q Consensus       689 vg~~lallvf~~E~~~~~~~~~~  711 (829)
                      .|++||.++.++|++|+.|...+
T Consensus       824 gGl~laMlvALiEF~yksr~Eak  846 (897)
T KOG1054|consen  824 GGLGLAMLVALIEFCYKSRAEAK  846 (897)
T ss_pred             hhHHHHHHHHHHHHHHHhhHHHH
Confidence            99999999999999999887644

>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor Back     alignment and domain information
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor Back     alignment and domain information
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily Back     alignment and domain information
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily Back     alignment and domain information
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family Back     alignment and domain information
>KOG1056 consensus Glutamate-gated metabotropic ion channel receptor subunit GRM2 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family Back     alignment and domain information
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor Back     alignment and domain information
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor Back     alignment and domain information
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor Back     alignment and domain information
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor Back     alignment and domain information
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor Back     alignment and domain information
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors Back     alignment and domain information
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR) Back     alignment and domain information
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor Back     alignment and domain information
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor Back     alignment and domain information
>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family Back     alignment and domain information
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor Back     alignment and domain information
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor Back     alignment and domain information
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor Back     alignment and domain information
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor Back     alignment and domain information
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [] Back     alignment and domain information
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor Back     alignment and domain information
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases Back     alignment and domain information
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G Back     alignment and domain information
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues Back     alignment and domain information
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor Back     alignment and domain information
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family Back     alignment and domain information
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors Back     alignment and domain information
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor Back     alignment and domain information
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA) Back     alignment and domain information
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2 Back     alignment and domain information
>PRK10797 glutamate and aspartate transporter subunit; Provisional Back     alignment and domain information
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed Back     alignment and domain information
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors Back     alignment and domain information
>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors Back     alignment and domain information
>PRK11260 cystine transporter subunit; Provisional Back     alignment and domain information
>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family Back     alignment and domain information
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors Back     alignment and domain information
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane Back     alignment and domain information
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed Back     alignment and domain information
>PRK15007 putative ABC transporter arginine-biding protein; Provisional Back     alignment and domain information
>PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional Back     alignment and domain information
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein Back     alignment and domain information
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein Back     alignment and domain information
>PRK15437 histidine ABC transporter substrate-binding protein HisJ; Provisional Back     alignment and domain information
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine) Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs) Back     alignment and domain information
>PRK10859 membrane-bound lytic transglycosylase F; Provisional Back     alignment and domain information
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs) Back     alignment and domain information
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory Back     alignment and domain information
>TIGR03870 ABC_MoxJ methanol oxidation system protein MoxJ Back     alignment and domain information
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional Back     alignment and domain information
>COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms] Back     alignment and domain information
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>TIGR02285 conserved hypothetical protein Back     alignment and domain information
>KOG1055 consensus GABA-B ion channel receptor subunit GABABR1 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions Back     alignment and domain information
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene Back     alignment and domain information
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins Back     alignment and domain information
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF) Back     alignment and domain information
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins Back     alignment and domain information
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins Back     alignment and domain information
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C Back     alignment and domain information
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors Back     alignment and domain information
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF) Back     alignment and domain information
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family Back     alignment and domain information
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A Back     alignment and domain information
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes Back     alignment and domain information
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway Back     alignment and domain information
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein Back     alignment and domain information
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type Back     alignment and domain information
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems Back     alignment and domain information
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family Back     alignment and domain information
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides Back     alignment and domain information
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism] Back     alignment and domain information
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria Back     alignment and domain information
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF) Back     alignment and domain information
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen Back     alignment and domain information
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins Back     alignment and domain information
>COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems Back     alignment and domain information
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins Back     alignment and domain information
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A Back     alignment and domain information
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system Back     alignment and domain information
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids Back     alignment and domain information
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily Back     alignment and domain information
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein Back     alignment and domain information
>PF10613 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- and glycine-binding site; InterPro: IPR019594 This entry, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and binds L-glutamate and glycine [, ] Back     alignment and domain information
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed Back     alignment and domain information
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein Back     alignment and domain information
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily Back     alignment and domain information
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional Back     alignment and domain information
>PF12974 Phosphonate-bd: ABC transporter, phosphonate, periplasmic substrate-binding protein ; PDB: 3N5L_B 3QUJ_C 3P7I_A 3QK6_A 3S4U_A Back     alignment and domain information
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein Back     alignment and domain information
>PF13379 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_A 2I49_A 2I4B_A 2I48_A 3QSL_A Back     alignment and domain information
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region Back     alignment and domain information
>PF03466 LysR_substrate: LysR substrate binding domain; InterPro: IPR005119 The structure of this domain is known and is similar to the periplasmic binding proteins [] Back     alignment and domain information
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown Back     alignment and domain information
>COG3221 PhnD ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR02122 TRAP_TAXI TRAP transporter solute receptor, TAXI family Back     alignment and domain information
>cd05466 PBP2_LTTR_substrate The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily Back     alignment and domain information
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins Back     alignment and domain information
>cd08459 PBP2_DntR_NahR_LinR_like The C-terminal substrate binding domain of LysR-type transcriptional regulators that are involved in the catabolism of dinitrotoluene, naphthalene and gamma-hexachlorohexane; contains the type 2 periplasmic binding fold Back     alignment and domain information
>TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>cd08442 PBP2_YofA_SoxR_like The C-terminal substrate binding domain of LysR-type transcriptional regulators, YofA and SoxR, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08468 PBP2_Pa0477 The C-terminal substrate biniding domain of an uncharacterized LysR-like transcriptional regulator Pa0477 related to DntR, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08418 PBP2_TdcA The C-terminal substrate binding domain of LysR-type transcriptional regulator TdcA, which is involved in the degradation of L-serine and L-threonine, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08463 PBP2_DntR_like_4 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08438 PBP2_CidR The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08421 PBP2_LTTR_like_1 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08440 PBP2_LTTR_like_4 TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK11480 tauA taurine transporter substrate binding subunit; Provisional Back     alignment and domain information
>cd08433 PBP2_Nac The C-teminal substrate binding domain of LysR-like nitrogen assimilation control (NAC) protein, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08412 PBP2_PAO1_like The C-terminal substrate-binding domain of putative LysR-type transcriptional regulator PAO1-like, a member of the type 2 periplasmic binding fold protein superfamily Back     alignment and domain information
>cd08461 PBP2_DntR_like_3 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK11151 DNA-binding transcriptional regulator OxyR; Provisional Back     alignment and domain information
>cd08466 PBP2_LeuO The C-terminal substrate binding domain of LysR-type transcriptional regulator LeuO, an activator of leucine synthesis operon, contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK12679 cbl transcriptional regulator Cbl; Reviewed Back     alignment and domain information
>cd08411 PBP2_OxyR The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily Back     alignment and domain information
>cd08415 PBP2_LysR_opines_like The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold Back     alignment and domain information
>TIGR00363 lipoprotein, YaeC family Back     alignment and domain information
>PRK12684 transcriptional regulator CysB-like protein; Reviewed Back     alignment and domain information
>PRK11233 nitrogen assimilation transcriptional regulator; Provisional Back     alignment and domain information
>CHL00180 rbcR LysR transcriptional regulator; Provisional Back     alignment and domain information
>cd08426 PBP2_LTTR_like_5 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08434 PBP2_GltC_like The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold Back     alignment and domain information
>cd08417 PBP2_Nitroaromatics_like The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK11242 DNA-binding transcriptional regulator CynR; Provisional Back     alignment and domain information
>cd08441 PBP2_MetR The C-terminal substrate binding domain of LysR-type transcriptional regulator metR, which regulates the expression of methionine biosynthetic genes, contains type 2 periplasmic binding fold Back     alignment and domain information
>cd08435 PBP2_GbpR The C-terminal substrate binding domain of galactose-binding protein regulator contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK09791 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>cd08464 PBP2_DntR_like_2 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08419 PBP2_CbbR_RubisCO_like The C-terminal substrate binding of LysR-type transcriptional regulator (CbbR) of RubisCO operon, which is involved in the carbon dioxide fixation, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08420 PBP2_CysL_like C-terminal substrate binding domain of LysR-type transcriptional regulator CysL, which activates the transcription of the cysJI operon encoding sulfite reductase, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08460 PBP2_DntR_like_1 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08462 PBP2_NodD The C-terminal substsrate binding domain of NodD family of LysR-type transcriptional regulators that regulates the expression of nodulation (nod) genes; contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08465 PBP2_ToxR The C-terminal substrate binding domain of LysR-type transcriptional regulator ToxR regulates the expression of the toxoflavin biosynthesis genes; contains the type 2 periplasmic bindinig fold Back     alignment and domain information
>TIGR02424 TF_pcaQ pca operon transcription factor PcaQ Back     alignment and domain information
>PRK12682 transcriptional regulator CysB-like protein; Reviewed Back     alignment and domain information
>cd08425 PBP2_CynR The C-terminal substrate-binding domain of the LysR-type transcriptional regulator CynR, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08457 PBP2_OccR The C-terminal substrate-domain of LysR-type transcriptional regulator, OccR, involved in the catabolism of octopine, contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK10341 DNA-binding transcriptional activator TdcA; Provisional Back     alignment and domain information
>cd08413 PBP2_CysB_like The C-terminal substrate domain of LysR-type transcriptional regulators CysB-like contains type 2 periplasmic binding fold Back     alignment and domain information
>cd08429 PBP2_NhaR The C-terminal substrate binding domain of LysR-type transcriptional activator of the nhaA gene, encoding Na+/H+ antiporter, contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK12683 transcriptional regulator CysB-like protein; Reviewed Back     alignment and domain information
>PRK12680 transcriptional regulator CysB-like protein; Reviewed Back     alignment and domain information
>cd08430 PBP2_IlvY The C-terminal substrate binding of LysR-type transcriptional regulator IlvY, which activates the expression of ilvC gene that encoding acetohydroxy acid isomeroreductase for the biosynthesis of branched amino acids; contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08436 PBP2_LTTR_like_3 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold Back     alignment and domain information
>TIGR00787 dctP tripartite ATP-independent periplasmic transporter solute receptor, DctP family Back     alignment and domain information
>cd08458 PBP2_NocR The C-terminal substrate-domain of LysR-type transcriptional regulator, NocR, involved in the catabolism of nopaline, contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK11482 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>cd08456 PBP2_LysR The C-terminal substrate binding domain of LysR, transcriptional regulator for lysine biosynthesis, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08444 PBP2_Cbl The C-terminal substrate binding domain of LysR-type transcriptional regulator Cbl, which is required for expression of sulfate starvation-inducible (ssi) genes, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08443 PBP2_CysB The C-terminal substrate domain of LysR-type transcriptional regulator CysB contains type 2 periplasmic binding fold Back     alignment and domain information
>PRK10837 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily Back     alignment and domain information
>PRK12681 cysB transcriptional regulator CysB; Reviewed Back     alignment and domain information
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems Back     alignment and domain information
>cd08427 PBP2_LTTR_like_2 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08451 PBP2_BudR The C-terminal substrate binding domain of LysR-type transcrptional regulator BudR, which is responsible for activation of the expression of the butanediol operon genes; contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08437 PBP2_MleR The substrate binding domain of LysR-type transcriptional regulator MleR which required for malolactic fermentation, contains type 2 periplasmic binidning fold Back     alignment and domain information
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional Back     alignment and domain information
>cd08469 PBP2_PnbR The C-terminal substrate binding domain of LysR-type transcriptional regulator PnbR, which is involved in regulating the pnb genes encoding enzymes for 4-nitrobenzoate catabolism, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08467 PBP2_SyrM The C-terminal substrate binding of LysR-type symbiotic regulator SyrM, which activates expression of nodulation gene NodD3, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08416 PBP2_MdcR The C-terminal substrate-binding domian of LysR-type transcriptional regulator MdcR, which involved in the malonate catabolism contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08449 PBP2_XapR The C-terminal substrate binding domain of LysR-type transcriptional regulator XapR involved in xanthosine catabolism, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08446 PBP2_Chlorocatechol The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the chlorocatechol catabolism, contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK11013 DNA-binding transcriptional regulator LysR; Provisional Back     alignment and domain information
>PRK09508 leuO leucine transcriptional activator; Reviewed Back     alignment and domain information
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily Back     alignment and domain information
>PRK15421 DNA-binding transcriptional regulator MetR; Provisional Back     alignment and domain information
>PF12727 PBP_like: PBP superfamily domain; InterPro: IPR024370 This entry represents members of the periplasmic binding domain superfamily [] Back     alignment and domain information
>cd08445 PBP2_BenM_CatM_CatR The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in benzoate catabolism; contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd08486 PBP2_CbnR The C-terminal substrate binding domain of LysR-type transcriptional regulator, CbnR, involved in the chlorocatechol catabolism, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd08414 PBP2_LTTR_aromatics_like The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold Back     alignment and domain information
>PRK11062 nhaR transcriptional activator NhaR; Provisional Back     alignment and domain information
>cd08450 PBP2_HcaR The C-terminal substrate binding domain of LysR-type transcriptional regulator HcaR in involved in 3-phenylpropionic acid catabolism, contains the type2 periplasmic binding fold Back     alignment and domain information
>COG1910 Periplasmic molybdate-binding protein/domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd08448 PBP2_LTTR_aromatics_like_2 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to regulators involved in the catabolism of aromatic compounds, contains type 2 periplasmic binding fold Back     alignment and domain information
>PF13531 SBP_bac_11: Bacterial extracellular solute-binding protein; PDB: 2HXW_B 3FJG_C 3FJM_B 3FJ7_B 3FIR_B 3AXF_C 1WOD_A 1AMF_A 3R26_A 1SBP_A Back     alignment and domain information
>cd08423 PBP2_LTTR_like_6 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold Back     alignment and domain information
>TIGR01256 modA molybdenum ABC transporter, periplasmic molybdate-binding protein Back     alignment and domain information
>TIGR02990 ectoine_eutA ectoine utilization protein EutA Back     alignment and domain information
>PF03480 SBP_bac_7: Bacterial extracellular solute-binding protein, family 7; InterPro: IPR018389 This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane Back     alignment and domain information
>PRK11074 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>PRK11716 DNA-binding transcriptional regulator IlvY; Provisional Back     alignment and domain information
>cd08453 PBP2_IlvR The C-terminal substrate binding domain of LysR-type transcriptional regulator, IlvR, involved in the biosynthesis of isoleucine, leucine and valine; contains type 2 periplasmic binding fold Back     alignment and domain information
>cd08485 PBP2_ClcR The C-terminal substrate binding domain of LysR-type transcriptional regulator ClcR involved in the chlorocatechol catabolism, contains type 2 periplasmic binding fold Back     alignment and domain information
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A Back     alignment and domain information
>PRK09860 putative alcohol dehydrogenase; Provisional Back     alignment and domain information
>TIGR03339 phn_lysR aminoethylphosphonate catabolism associated LysR family transcriptional regulator Back     alignment and domain information
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation Back     alignment and domain information
>PRK09906 DNA-binding transcriptional regulator HcaR; Provisional Back     alignment and domain information
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>COG0725 ModA ABC-type molybdate transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0715 TauA ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK15454 ethanol dehydrogenase EutG; Provisional Back     alignment and domain information
>PF14503 YhfZ_C: YhfZ C-terminal domain; PDB: 2OZZ_B Back     alignment and domain information
>TIGR01481 ccpA catabolite control protein A Back     alignment and domain information
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query829
3kg2_A823 Ampa Subtype Ionotropic Glutamate Receptor In Compl 3e-18
3oek_A286 Crystal Structure Of Glun2d Ligand-Binding Core In 1e-06
2a5s_A284 Crystal Structure Of The Nr2a Ligand Binding Core I 2e-04
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With Competitive Antagonist Zk 200775 Length = 823 Back     alignment and structure 
Iteration: 1

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 131/572 (22%), Positives = 226/572 (39%), Gaps = 74/572 (12%)
Query: 147 LENFRVRWKRKFLQENPSLFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSN 206
           +  F  RW     +E P    A +     L YDA   +  A            +   + +
Sbjct: 246 VSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGD 305
Query: 207 ATDLEAFGISQNGPKLLQALSSIRFRGLTGDYIF-VDGQLQSSAFEIINVN-NGARGVGF 264
                A    Q G ++ +AL  ++  GL+G+  F  +G+  +    I+ +  NG R +G+
Sbjct: 306 CLANPAVPWGQ-GVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGY 364
Query: 265 WSPEKGXXXXXXXXXXXXXXXRPIIWPGDSTSDPKGWEIPTNEKKLRVGVPVKKGFSDFV 324
           WS                     ++   D TS          E+K  V   + +     +
Sbjct: 365 WSE-----------------VDKMVLTEDDTSGL--------EQKTVVVTTILESPYVMM 399
Query: 325 KVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLIYQV 381
           K             GY +D+   + +   +      V    Y   D  +   +N ++ ++
Sbjct: 400 KANHAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGEL 458
Query: 382 FLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWV 441
             G+ D  +   TI   R   +DF+ P+   G+S+++      K   + FL PL +++W+
Sbjct: 459 VYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWM 518
Query: 442 TSGCFFIFIGF-VVWVLEHRVN------EDFRGPARHQ---------VGTSFWFSFSTMV 485
                F +IG  VV  L  R +      E+F      Q         +  S WFS     
Sbjct: 519 C--IVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLG--A 574
Query: 486 FSQRERVISNLA---RFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKRG 542
           F Q+   IS  +   R V  VW F  LI+I SYTA+L + LTV+++   I     L K+ 
Sbjct: 575 FMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQT 634
Query: 543 DNVGYQKGSFVLGILKQLGFDERKLVVYN---SHEECDE--LFQKGSANGGIAAAFDEIP 597
           + + Y  G+   G  K+  F   K+ V++   ++    E  +F + +A G       +  
Sbjct: 635 E-IAY--GTLDSGSTKEF-FRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGK 690
Query: 598 YAKLL-------IGQHCSKYTM-VEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKM 649
           YA LL       I Q     TM V     + G+G A P  S L   V+ A+L ++E   +
Sbjct: 691 YAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGLL 750
Query: 650 KEIEDAWFKKHSSC--PDAGTVVSARSLGLNS 679
            ++++ W+     C   D+G+     +L L++
Sbjct: 751 DKLKNKWWYDKGECGAKDSGSKEKTSALSLSN 782
>pdb|3OEK|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex With L- Aspartate Length = 286 Back     alignment and structure
>pdb|2A5S|A Chain A, Crystal Structure Of The Nr2a Ligand Binding Core In Complex With Glutamate Length = 284 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query829
3kg2_A823 Glutamate receptor 2; ION channel, membrane protei 1e-171
4f11_A433 Gamma-aminobutyric acid type B receptor subunit 2; 2e-56
3h6g_A395 Glutamate receptor, ionotropic kainate 2; membrane 3e-55
3o21_A389 Glutamate receptor 3; periplasmatic binding protei 7e-53
3hsy_A376 Glutamate receptor 2; ligand-gated ION channel, sy 4e-51
3saj_A384 Glutamate receptor 1; rossman fold, ION channel, m 5e-50
3om0_A393 Glutamate receptor, ionotropic kainate 5; membrane 1e-48
3qel_B364 Glutamate [NMDA] receptor subunit epsilon-2; ION c 5e-40
1jdp_A441 NPR-C, atrial natriuretic peptide clearance recept 3e-37
3qek_A384 NMDA glutamate receptor subunit; amino terminal do 2e-35
1dp4_A435 Atrial natriuretic peptide receptor A; periplasmic 1e-25
1yae_A312 Glutamate receptor, ionotropic kainate 2; kainate 4e-18
1yae_A312 Glutamate receptor, ionotropic kainate 2; kainate 1e-09
3g3k_A259 Glutamate receptor, ionotropic kainate 2; membrane 8e-13
3g3k_A259 Glutamate receptor, ionotropic kainate 2; membrane 2e-10
2a5s_A284 N-methyl-D-aspartate receptor nmdar2A subunit, NMD 3e-11
2a5s_A284 N-methyl-D-aspartate receptor nmdar2A subunit, NMD 9e-06
2rc8_A294 Glutamate [NMDA] receptor subunit 3A; membrane pro 3e-11
2rc8_A294 Glutamate [NMDA] receptor subunit 3A; membrane pro 8e-08
2v3u_A265 Glutamate receptor delta-2 subunit; postsynaptic m 2e-10
2v3u_A265 Glutamate receptor delta-2 subunit; postsynaptic m 8e-10
1mqi_A263 Glutamate receptor 2; GLUR2, ligand binding core, 2e-10
1mqi_A263 Glutamate receptor 2; GLUR2, ligand binding core, 6e-10
1pb7_A292 N-methyl-D-aspartate receptor subunit 1; ligand bi 3e-10
1pb7_A292 N-methyl-D-aspartate receptor subunit 1; ligand bi 2e-08
3h5l_A419 Putative branched-chain amino acid ABC transporter 3e-09
3sm9_A479 Mglur3, metabotropic glutamate receptor 3; structu 4e-09
4dz1_A259 DALS D-alanine transporter; D-alanine binding, per 7e-09
4dz1_A259 DALS D-alanine transporter; D-alanine binding, per 1e-04
1usg_A346 Leucine-specific binding protein; leucine-binding 2e-08
3lop_A364 Substrate binding periplasmic protein; protein str 4e-08
4eyg_A368 Twin-arginine translocation pathway signal; PSI-bi 7e-08
3ipc_A356 ABC transporter, substrate binding protein (amino; 1e-07
2v25_A259 Major cell-binding factor; antigen, adhesin, aspar 1e-07
2e4u_A555 Metabotropic glutamate receptor 3; G-protein-coupl 2e-07
1ii5_A233 SLR1257 protein; membrane protein; HET: GLU; 1.60A 2e-07
1ii5_A233 SLR1257 protein; membrane protein; HET: GLU; 1.60A 2e-05
3ks9_A496 Mglur1, metabotropic glutamate receptor 1; glutama 3e-07
2pyy_A228 Ionotropic glutamate receptor bacterial homologue; 3e-07
2pyy_A228 Ionotropic glutamate receptor bacterial homologue; 6e-05
3i45_A387 Twin-arginine translocation pathway signal protei; 3e-07
1xt8_A292 Putative amino-acid transporter periplasmic solut 5e-07
3hut_A358 Putative branched-chain amino acid ABC transporter 6e-07
4evq_A375 Putative ABC transporter subunit, substrate-bindi 8e-07
2vha_A287 Periplasmic binding transport protein; periplasmic 2e-06
3n0w_A379 ABC branched chain amino acid family transporter, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
3sg0_A386 Extracellular ligand-binding receptor; structural 2e-06
2yjp_A291 Putative ABC transporter, periplasmic binding Pro 3e-06
3kbr_A239 Cyclohexadienyl dehydratase; pseudomonas aeruginos 4e-06
3kbr_A239 Cyclohexadienyl dehydratase; pseudomonas aeruginos 6e-06
2iee_A271 ORF2, probable ABC transporter extracellular-bindi 5e-06
4f3p_A249 Glutamine-binding periplasmic protein; ssgcid, str 7e-06
4f3p_A249 Glutamine-binding periplasmic protein; ssgcid, str 3e-05
2q88_A257 EHUB, putative ABC transporter amino acid-binding 7e-06
3snr_A362 Extracellular ligand-binding receptor; structural 1e-05
2pvu_A272 ARTJ; basic amino acid binding protein, ABC transp 1e-05
2pvu_A272 ARTJ; basic amino acid binding protein, ABC transp 7e-05
3mq4_A481 Mglur7, metabotropic glutamate receptor 7; glutama 2e-05
3eaf_A391 ABC transporter, substrate binding protein; PSI2, 3e-05
2yln_A283 Putative ABC transporter, periplasmic binding Pro 4e-05
3k4u_A245 Binding component of ABC transporter; structural g 6e-05
3k4u_A245 Binding component of ABC transporter; structural g 1e-04
3h7m_A234 Sensor protein; histidine kinase sensor domain, ki 6e-05
3h7m_A234 Sensor protein; histidine kinase sensor domain, ki 2e-04
3i09_A375 Periplasmic branched-chain amino acid-binding Pro; 7e-05
4eq9_A246 ABC transporter substrate-binding protein-amino A 1e-04
3mpk_A267 Virulence sensor protein BVGS; venus flytrap, sens 1e-04
1wdn_A226 GLNBP, glutamine binding protein; closed form, com 1e-04
1wdn_A226 GLNBP, glutamine binding protein; closed form, com 2e-04
3td9_A366 Branched chain amino acid ABC transporter, peripl 2e-04
3lkb_A392 Probable branched-chain amino acid ABC transporter 3e-04
3hv1_A268 Polar amino acid ABC uptake transporter substrate 5e-04
3hv1_A268 Polar amino acid ABC uptake transporter substrate 5e-04
3del_B242 Arginine binding protein; alpha and beta protein ( 5e-04
3tql_A227 Arginine-binding protein; transport and binding pr 6e-04
3kzg_A237 Arginine 3RD transport system periplasmic binding 8e-04
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Length = 823 Back     alignment and structure
 Score =  514 bits (1324), Expect = e-171
 Identities = 140/744 (18%), Positives = 268/744 (36%), Gaps = 61/744 (8%)

Query: 6   SSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSV--ISPLAT 63
               GA+ ++I+ + W +   +Y D+  G   + ++ D+      +V   +V  I+    
Sbjct: 106 PDLKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKK 164

Query: 64  DDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTL 123
           D+        L   + R  IL       + I ++   IG   KG  +I+ +        L
Sbjct: 165 DETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDLL 224

Query: 124 EPSVTDSMQGVIGVRPYVPKTKALENFRVRWKRKFLQENPSLFDAELNIFGLLAYDATSA 183
           +         V G +        +  F  RW     +E P    A +     L YDA   
Sbjct: 225 KIQ--FGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQV 282

Query: 184 LAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQALSSIRFRGLTGDYIFV-D 242
           +  A            +   + +            G ++ +AL  ++  GL+G+  F  +
Sbjct: 283 MTEAFRNLRKQRIEISRRGNAGD-CLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQN 341

Query: 243 GQLQSSAFEIINVN-NGARGVGFWSPEKGLTQKLSSNSTTKSKLRPIIWPGDSTSDPKGW 301
           G+  +    I+ +  NG R +G+WS    +       S  + K   +             
Sbjct: 342 GKRINYTINIMELKTNGPRKIGYWSEVDKMVLTEDDTSGLEQKTVVVTTI---------L 392

Query: 302 EIPTNEKKLRVGVPVKKGFSDFVKVTIDPKTQETSVVGYSIDVFKAVIEELPYAVAYDFV 361
           E P       V           +K             GY +D+   + +   +      V
Sbjct: 393 ESP------YV----------MMKANHAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIV 436

Query: 362 PYAQ--PDGTSSGSYNDLIYQVFLGEFDAVVGDTTIVFNRSNYVDFTLPYTESGVSMIVP 419
              +       +  +N ++ ++  G+ D  +   TI   R   +DF+ P+   G+S+++ 
Sbjct: 437 GDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIK 496

Query: 420 IKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRV-----NEDFRGPARHQ-- 472
                K   + FL PL +++W+     +I +  V++++          E+F      Q  
Sbjct: 497 KPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSS 556

Query: 473 -------VGTSFWFSFSTMVFSQRERVISNLA-RFVVIVWCFVVLILIQSYTASLTSLLT 524
                  +  S WFS    +    +    +L+ R V  VW F  LI+I SYTA+L + LT
Sbjct: 557 ESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 616

Query: 525 VDQLQPTITDVNLLIKRGD-NVGYQKGSFVLG-ILKQLGFDERKLVVYNSHEEC------ 576
           V+++   I     L K+ +   G            +       K+  Y    E       
Sbjct: 617 VERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRT 676

Query: 577 -DELFQKGSANGGIAAAFDEIPYAKLLIGQHCSKYTMVEPTFKTAGFGFAFPLHSPLVHD 635
             E   +   + G  A   E    + +  +       V     + G+G A P  S L   
Sbjct: 677 TAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTP 736

Query: 636 VSKAILNVTEGDKMKEIEDAWFKKHSSCP--DAGTVVSARSLGLNSFWGLFLIAGIAAIL 693
           V+ A+L ++E   + ++++ W+     C   D+G+     +L L++  G+F I      L
Sbjct: 737 VNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGL 796

Query: 694 ALIIFLAVFVHEHWNVLKNSESSL 717
           A+++ L  F ++     K  +  +
Sbjct: 797 AMLVALIEFCYKSRAEAKRMKGLV 820
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A* Length = 433 Back     alignment and structure
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A* Length = 395 Back     alignment and structure
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A Length = 389 Back     alignment and structure
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A Length = 376 Back     alignment and structure
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus} Length = 384 Back     alignment and structure
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A Length = 393 Back     alignment and structure
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A* Length = 364 Back     alignment and structure
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A* Length = 441 Back     alignment and structure
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A* Length = 384 Back     alignment and structure
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A* Length = 435 Back     alignment and structure
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1 Length = 312 Back     alignment and structure
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1 Length = 312 Back     alignment and structure
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ... Length = 259 Back     alignment and structure
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ... Length = 259 Back     alignment and structure
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A* Length = 284 Back     alignment and structure
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A* Length = 284 Back     alignment and structure
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A Length = 294 Back     alignment and structure
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A Length = 294 Back     alignment and structure
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A Length = 265 Back     alignment and structure
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A Length = 265 Back     alignment and structure
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... Length = 263 Back     alignment and structure
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... Length = 263 Back     alignment and structure
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A Length = 292 Back     alignment and structure
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A Length = 292 Back     alignment and structure
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} Length = 419 Back     alignment and structure
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens} Length = 479 Back     alignment and structure
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A Length = 259 Back     alignment and structure
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A Length = 259 Back     alignment and structure
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A Length = 346 Back     alignment and structure
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum} Length = 364 Back     alignment and structure
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A* Length = 368 Back     alignment and structure
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A Length = 356 Back     alignment and structure
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni} Length = 259 Back     alignment and structure
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A* Length = 555 Back     alignment and structure
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Length = 233 Back     alignment and structure
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Length = 233 Back     alignment and structure
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A* Length = 496 Back     alignment and structure
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} Length = 228 Back     alignment and structure
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} Length = 228 Back     alignment and structure
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum} Length = 387 Back     alignment and structure
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 Length = 292 Back     alignment and structure
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} Length = 358 Back     alignment and structure
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A Length = 375 Back     alignment and structure
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* Length = 287 Back     alignment and structure
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans} Length = 379 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A* Length = 386 Back     alignment and structure
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae} Length = 291 Back     alignment and structure
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Length = 239 Back     alignment and structure
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Length = 239 Back     alignment and structure
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} Length = 271 Back     alignment and structure
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} Length = 249 Back     alignment and structure
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} Length = 249 Back     alignment and structure
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* Length = 257 Back     alignment and structure
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* Length = 272 Back     alignment and structure
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* Length = 272 Back     alignment and structure
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} PDB: 2e4z_A* Length = 481 Back     alignment and structure
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix} Length = 391 Back     alignment and structure
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A Length = 283 Back     alignment and structure
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} Length = 245 Back     alignment and structure
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} Length = 245 Back     alignment and structure
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} Length = 234 Back     alignment and structure
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} Length = 234 Back     alignment and structure
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei} Length = 375 Back     alignment and structure
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae} Length = 246 Back     alignment and structure
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A Length = 267 Back     alignment and structure
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A Length = 226 Back     alignment and structure
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A Length = 226 Back     alignment and structure
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima} Length = 366 Back     alignment and structure
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus} Length = 392 Back     alignment and structure
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} Length = 268 Back     alignment and structure
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} Length = 268 Back     alignment and structure
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} Length = 242 Back     alignment and structure
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} Length = 227 Back     alignment and structure
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} Length = 237 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query829
3kg2_A823 Glutamate receptor 2; ION channel, membrane protei 100.0
3o21_A389 Glutamate receptor 3; periplasmatic binding protei 100.0
4gpa_A389 Glutamate receptor 4; PBP fold, ligand-gated ION c 100.0
2e4u_A555 Metabotropic glutamate receptor 3; G-protein-coupl 100.0
3sm9_A479 Mglur3, metabotropic glutamate receptor 3; structu 100.0
3hsy_A376 Glutamate receptor 2; ligand-gated ION channel, sy 100.0
3ks9_A496 Mglur1, metabotropic glutamate receptor 1; glutama 100.0
3saj_A384 Glutamate receptor 1; rossman fold, ION channel, m 99.97
3qel_B364 Glutamate [NMDA] receptor subunit epsilon-2; ION c 99.97
3mq4_A481 Mglur7, metabotropic glutamate receptor 7; glutama 99.97
3om0_A393 Glutamate receptor, ionotropic kainate 5; membrane 99.97
3qek_A384 NMDA glutamate receptor subunit; amino terminal do 99.97
4f11_A433 Gamma-aminobutyric acid type B receptor subunit 2; 99.96
1jdp_A441 NPR-C, atrial natriuretic peptide clearance recept 99.96
3h6g_A395 Glutamate receptor, ionotropic kainate 2; membrane 99.96
1dp4_A435 Atrial natriuretic peptide receptor A; periplasmic 99.96
1yae_A312 Glutamate receptor, ionotropic kainate 2; kainate 99.94
2a5s_A284 N-methyl-D-aspartate receptor nmdar2A subunit, NMD 99.92
3g3k_A259 Glutamate receptor, ionotropic kainate 2; membrane 99.92
4h5g_A243 Amino acid ABC superfamily ATP binding cassette tr 99.92
1pb7_A292 N-methyl-D-aspartate receptor subunit 1; ligand bi 99.92
4gvo_A243 LMO2349 protein; structural genomics, IDP05245, L- 99.91
2rc8_A294 Glutamate [NMDA] receptor subunit 3A; membrane pro 99.91
2v3u_A265 Glutamate receptor delta-2 subunit; postsynaptic m 99.9
3k4u_A245 Binding component of ABC transporter; structural g 99.89
3kzg_A237 Arginine 3RD transport system periplasmic binding 99.89
1mqi_A263 Glutamate receptor 2; GLUR2, ligand binding core, 99.89
3i6v_A232 Periplasmic His/Glu/Gln/Arg/opine family-binding; 99.88
4f3p_A249 Glutamine-binding periplasmic protein; ssgcid, str 99.88
3hv1_A268 Polar amino acid ABC uptake transporter substrate 99.88
3kbr_A239 Cyclohexadienyl dehydratase; pseudomonas aeruginos 99.88
3del_B242 Arginine binding protein; alpha and beta protein ( 99.87
1ii5_A233 SLR1257 protein; membrane protein; HET: GLU; 1.60A 99.87
3tql_A227 Arginine-binding protein; transport and binding pr 99.86
1wdn_A226 GLNBP, glutamine binding protein; closed form, com 99.86
3h7m_A234 Sensor protein; histidine kinase sensor domain, ki 99.85
4dz1_A259 DALS D-alanine transporter; D-alanine binding, per 99.85
2y7i_A229 STM4351; arginine-binding protein; HET: ARG; 1.90A 99.85
3mpk_A267 Virulence sensor protein BVGS; venus flytrap, sens 99.85
4eq9_A246 ABC transporter substrate-binding protein-amino A 99.84
1lst_A239 Lysine, arginine, ornithine-binding protein; amino 99.84
2iee_A271 ORF2, probable ABC transporter extracellular-bindi 99.84
2q88_A257 EHUB, putative ABC transporter amino acid-binding 99.84
3td9_A366 Branched chain amino acid ABC transporter, peripl 99.83
2pyy_A228 Ionotropic glutamate receptor bacterial homologue; 99.82
3h5l_A419 Putative branched-chain amino acid ABC transporter 99.82
2pvu_A272 ARTJ; basic amino acid binding protein, ABC transp 99.82
4i62_A269 Amino acid ABC transporter, periplasmic amino ACI 99.82
3i45_A387 Twin-arginine translocation pathway signal protei; 99.82
3qax_A268 Probable ABC transporter arginine-binding protein; 99.81
4evq_A375 Putative ABC transporter subunit, substrate-bindi 99.81
2vha_A287 Periplasmic binding transport protein; periplasmic 99.81
1usg_A346 Leucine-specific binding protein; leucine-binding 99.81
2yln_A283 Putative ABC transporter, periplasmic binding Pro 99.8
3ipc_A356 ABC transporter, substrate binding protein (amino; 99.8
3i09_A375 Periplasmic branched-chain amino acid-binding Pro; 99.8
4eyg_A368 Twin-arginine translocation pathway signal; PSI-bi 99.8
2yjp_A291 Putative ABC transporter, periplasmic binding Pro 99.79
1xt8_A292 Putative amino-acid transporter periplasmic solut 99.79
3hut_A358 Putative branched-chain amino acid ABC transporter 99.79
3n0w_A379 ABC branched chain amino acid family transporter, 99.77
4f06_A371 Extracellular ligand-binding receptor; PSI-biology 99.76
3eaf_A391 ABC transporter, substrate binding protein; PSI2, 99.75
3lkb_A392 Probable branched-chain amino acid ABC transporter 99.74
1pea_A385 Amidase operon; gene regulator, receptor, binding 99.73
3lop_A364 Substrate binding periplasmic protein; protein str 99.72
3n0x_A374 Possible substrate binding protein of ABC transpo 99.69
3snr_A362 Extracellular ligand-binding receptor; structural 99.69
2v25_A259 Major cell-binding factor; antigen, adhesin, aspar 99.67
3sg0_A386 Extracellular ligand-binding receptor; structural 99.66
4gnr_A353 ABC transporter substrate-binding protein-branche 99.65
3ckm_A327 YRAM (HI1655), LPOA; periplasmic-binding protein, 99.39
2h4a_A325 YRAM (HI1655); perplasmic binding protein, lipopro 99.24
3n5l_A310 Binding protein component of ABC phosphonate TRAN; 98.79
2ozz_A231 Hypothetical protein YHFZ; alpha-beta structure, s 98.73
3p7i_A321 PHND, subunit of alkylphosphonate ABC transporter; 98.68
3ksx_A324 Nitrate transport protein; SSUA, alkanesulfonate-b 97.84
3uif_A348 Sulfonate ABC transporter, periplasmic sulfonate- 97.8
2x26_A308 Periplasmic aliphatic sulphonates-binding protein; 97.75
3un6_A341 Hypothetical protein saouhsc_00137; structural gen 97.66
3qsl_A346 Putative exported protein; unknown, structural gen 97.46
3ix1_A302 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine 97.39
2f5x_A312 BUGD; periplasmic binding protein, transport prote 97.37
2dvz_A314 BUGE, putative exported protein; periplamsic bindi 97.13
2qpq_A301 Protein BUG27; alpha/beta domain, venus flytrap, t 97.12
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 96.66
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 96.6
4ddd_A327 Immunogenic protein; ssgcid, structural genomics, 96.35
2a9h_A155 Voltage-gated potassium channel; potassium channel 96.24
2x7q_A321 Ca3427, possible thiamine biosynthesis enzyme; unk 96.23
4ab5_A222 Transcriptional regulator, LYSR family; transcript 96.06
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 95.93
2g29_A417 Nitrate transport protein NRTA; solute-binding pro 95.82
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 95.66
3ho7_A232 OXYR; beta-alpha-barrels, DNA-binding, transcripti 95.65
3oxn_A241 Putative transcriptional regulator, LYSR family; s 95.47
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 94.97
1zbm_A280 Hypothetical protein AF1704; alpha-beta protein, s 94.97
2y7p_A218 LYSR-type regulatory protein; transcription regula 94.57
2esn_A310 Probable transcriptional regulator; PA0477, APC582 94.38
3ouf_A97 Potassium channel protein; ION channel, membrane, 94.32
3jv9_A219 OXYR, transcriptional regulator, LYSR family; LYSR 94.31
2zzv_A361 ABC transporter, solute-binding protein; periplasm 94.17
2q67_A114 Potassium channel protein; inverted teepee, helix 94.13
1us5_A314 Putative GLUR0 ligand binding core; receptor, memb 94.1
3fzv_A306 Probable transcriptional regulator; LYSR, structur 94.03
2fyi_A228 HTH-type transcriptional regulator CBL; Lys-R fami 93.81
1p7b_A333 Integral membrane channel and cytosolic domains; t 93.78
1xl4_A301 Inward rectifier potassium channel; integral membr 93.68
2ql3_A209 Probable transcriptional regulator, LYSR family P; 93.66
2hxr_A238 HTH-type transcriptional regulator CYNR; CYNR tran 93.52
4esw_A342 Pyrimidine biosynthesis enzyme THI13; thiamin pyri 93.28
2pfy_A301 Putative exported protein; extracytoplasmic solute 93.12
2hzl_A365 Trap-T family sorbitol/mannitol transporter, perip 93.05
2i49_A429 Bicarbonate transporter; alpha-beta protein, C-cla 92.98
2pfz_A301 Putative exported protein; extracytoplasmic solute 92.71
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 92.54
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 92.47
3kos_A219 HTH-type transcriptional activator AMPR; alpha-bet 92.45
1al3_A324 Cys regulon transcriptional activator CYSB; LYSR f 92.12
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 92.04
1atg_A231 MODA, periplasmic molybdate-binding protein; tungs 91.76
3fxq_A305 LYSR type regulator of TSAMBCD; transcriptional re 91.55
1uth_A315 LYSR-type regulatory protein; transcription regula 91.25
1i6a_A219 OXYR, hydrogen peroxide-inducible genes activator; 90.99
3gzg_A253 Molybdate-binding periplasmic protein; permease; m 90.44
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 90.23
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 90.15
1ixc_A294 CBNR, LYSR-type regulatory protein; long alpha hel 90.12
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 90.12
3r26_A237 Molybdate-binding periplasmic protein; protein bin 89.43
3d8u_A275 PURR transcriptional regulator; APC91343.1, vibrio 88.62
2h9b_A312 HTH-type transcriptional regulator BENM; LTTR, tra 88.59
3brq_A296 HTH-type transcriptional regulator ASCG; transcrip 88.32
3hhf_B213 Transcriptional regulator, LYSR family; transcript 88.29
2h0a_A276 TTHA0807, transcriptional regulator; repressor, st 88.08
2h98_A313 HTH-type transcriptional regulator CATM; BENM, LTT 87.9
1lnq_A336 MTHK channels, potassium channel related protein; 87.6
1dbq_A289 Purine repressor; transcription regulation, DNA-bi 86.97
3gv0_A288 Transcriptional regulator, LACI family; transcript 86.85
3gyb_A280 Transcriptional regulators (LACI-family transcript 85.69
3k4h_A292 Putative transcriptional regulator; structural gen 85.63
3g85_A289 Transcriptional regulator (LACI family); transcrip 84.65
2fep_A289 Catabolite control protein A; CCPA, transcriptiona 84.54
3onm_A238 Transcriptional regulator LRHA; LYSR, ROVM, transc 84.44
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 84.37
3clk_A290 Transcription regulator; 11017J, PSI-II, NYSGXRC, 83.74
2rgy_A290 Transcriptional regulator, LACI family; 11011J, NY 83.58
2xwv_A312 Sialic acid-binding periplasmic protein SIAP; tran 83.13
3dbi_A338 Sugar-binding transcriptional regulator, LACI FAM; 82.54
3cs3_A277 Sugar-binding transcriptional regulator, LACI FAM; 82.49
2hpg_A327 ABC transporter, periplasmic substrate-binding pro 82.24
3bbl_A287 Regulatory protein of LACI family; protein structu 82.23
1r9l_A309 Glycine betaine-binding periplasmic protein; perip 82.16
2qu7_A288 Putative transcriptional regulator; structural gen 82.13
3ixl_A240 Amdase, arylmalonate decarboxylase; enantioselecti 81.04
3qk7_A294 Transcriptional regulators; structural genomics, N 80.99
1qpz_A340 PURA, protein (purine nucleotide synthesis repress 80.93
3ukm_A280 Potassium channel subfamily K member 1; membrane p 80.14
2hsg_A332 Glucose-resistance amylase regulator; CCPA, transc 80.09
3c3k_A285 Alanine racemase; structural genomics, protein str 80.08
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=8.3e-86  Score=807.05  Aligned_cols=665  Identities=20%  Similarity=0.308  Sum_probs=544.7

Q ss_pred             HHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCC--ChhHHHHHHHHhhcCCCeEEEEE
Q 043276            8 QVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLA--TDDQIEKELYKLFTMQTRVFILH   85 (829)
Q Consensus         8 q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~--~~~~~~~~l~~lk~~~arViIv~   85 (829)
                      |+.|+++++++|||+||++|| |++||.+.++.|.+++++.|+||++.+.++.+.  ++.++..++.+|++++++|||++
T Consensus       108 ~~~a~~~l~~~~gw~~v~ii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~  186 (823)
T 3kg2_A          108 LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILD  186 (823)
T ss_dssp             CHHHHHHHHHHTTCSEEEEEE-CGGGCTHHHHHHHHHHHHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEE
T ss_pred             HHHHHHHHHHHCCCCEEEEEE-eCChhHHHHHHHHHHhhccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEE
Confidence            899999999999999999999 889999999999999999999999998877652  25578899999999999999999


Q ss_pred             cChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEeccCCChhHHHHHHHHHHhhcccCCCC
Q 043276           86 MLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVPKTKALENFRVRWKRKFLQENPSL  165 (829)
Q Consensus        86 ~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~F~~~w~~~~~~~~~~~  165 (829)
                      ++.+.+..++++|+++||+..+|+||+++.+....+.  ....+...|++++.++.++++.+++|.++|++.+++.++..
T Consensus       187 ~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  264 (823)
T 3kg2_A          187 CERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL--LKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGA  264 (823)
T ss_dssp             CCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSSSSCC--SSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTC
T ss_pred             CCHHHHHHHHHHHHHcCcCCCCeEEEEecccccccch--HHhhcCCCCceEeeeecCCchHHHHHHHHHHhhcccccCCC
Confidence            9999999999999999999899999999854433222  12344566799999999999999999999999998877655


Q ss_pred             CccccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCCCCCCCccc--cCCCChHHHHHHHhccceecccccEEEe-c
Q 043276          166 FDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAF--GISQNGPKLLQALSSIRFRGLTGDYIFV-D  242 (829)
Q Consensus       166 ~~~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~l~~~L~~~~f~G~tG~~~F~-~  242 (829)
                      ....++.+++++||||+++|+|+++++.+........   ...+|...  ..+.+|.+|+++|++++|+|++|.+.|+ +
T Consensus       265 ~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~~~~~~---~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~  341 (823)
T 3kg2_A          265 HTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRG---NAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQN  341 (823)
T ss_dssp             CSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSS---CCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSS
T ss_pred             CccccchhhHHHHHHHHHHHHHHHHHHhhccccccCC---CCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCC
Confidence            5556788999999999999999999976543221111   11234332  3456789999999999999999999997 9


Q ss_pred             CccccceEEEEEcc-CCcEEEEEecCCCCcccccCCCccccCCccceecCCCCCCCCCCcccCCCCceEEEecccccCcc
Q 043276          243 GQLQSSAFEIINVN-NGARGVGFWSPEKGLTQKLSSNSTTKSKLRPIIWPGDSTSDPKGWEIPTNEKKLRVGVPVKKGFS  321 (829)
Q Consensus       243 G~~~~~~y~I~n~~-~g~~~VG~w~~~~g~~~~l~~~~~~~~~~~~i~Wpg~~~~~P~~~~~p~~~~~lrv~v~~~~~~~  321 (829)
                      |++....|+|+|++ +|+++||+|++..++.....                      .  .....+++|+|++...+|  
T Consensus       342 G~~~~~~~~I~~~~~~g~~~vg~w~~~~g~~~~~~----------------------~--~~~~~~~~l~v~~~~~~P--  395 (823)
T 3kg2_A          342 GKRINYTINIMELKTNGPRKIGYWSEVDKMVLTED----------------------D--TSGLEQKTVVVTTILESP--  395 (823)
T ss_dssp             SCBCSCEEEEEEECSSCEEEEEEEETTTEEEECCC----------------------C--CSSCCCCCEEEEECCCTT--
T ss_pred             CcccccEEEEEEEcCCCCeeEEEEcCCCCceeccC----------------------c--ccccCCCEEEEEEecCCC--
Confidence            99988899999999 88999999998877653221                      0  012347889999875554  


Q ss_pred             ceEEEee--cCCCCCceEEEeeHHHHHHHHHHCCCcccEEEEecCCCCC---CCCCChhHHHHhHhcCcccEEEeccccc
Q 043276          322 DFVKVTI--DPKTQETSVVGYSIDVFKAVIEELPYAVAYDFVPYAQPDG---TSSGSYNDLIYQVFLGEFDAVVGDTTIV  396 (829)
Q Consensus       322 p~~~~~~--~~~~~~~~~~G~~idll~~ia~~l~f~~~~~~~~~~~~~g---~~ng~~~~li~~l~~g~~Di~~~~~~it  396 (829)
                       |++.+.  ++.++++++.|||+||++++++++||++++..++.+ ..|   ..||+|++++++|.+|++|++++++++|
T Consensus       396 -~~~~~~~~~~~~~~~~~~G~~~dl~~~~a~~l~~~~~~~~~~~~-~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t  473 (823)
T 3kg2_A          396 -YVMMKANHAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDG-KYGARDADTKIWNGMVGELVYGKADIAIAPLTIT  473 (823)
T ss_dssp             -TSEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECSSC-CCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCC
T ss_pred             -cEEEecCccccCCCCceEEEHHHHHHHHHHHcCCcEEEEEccCC-cccccCCCCCchhhHHHhhccccCcEEecceecc
Confidence             555432  233567899999999999999999997766655432 223   2578999999999999999999999999


Q ss_pred             cccceeccccccccccceEEEEEccCCCCCCceeeeccCCHhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCc-------
Q 043276          397 FNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVLEHRVNEDFRGPA-------  469 (829)
Q Consensus       397 ~~R~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~v~~~~~~~~~~~~~~~~-------  469 (829)
                      ++|.+.+|||.||+.+++++++|++....++++.|++||++.+|++++++++++++++|+++|..+.+|+.+.       
T Consensus       474 ~~R~~~~dfs~py~~~~~~~~v~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~  553 (823)
T 3kg2_A          474 LVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRET  553 (823)
T ss_dssp             HHHHTTEEECSCSEEECEEEEEECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC------------------
T ss_pred             hhheeeEEeccchhhCCEEEEEECCCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCccccccccc
Confidence            9999999999999999999999998777778999999999999999999999999999999998765544221       


Q ss_pred             -------cCccchhHHHHHHHhhhcCcc-ccccchhHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCHHHHHhC
Q 043276          470 -------RHQVGTSFWFSFSTMVFSQRE-RVISNLARFVVIVWCFVVLILIQSYTASLTSLLTVDQLQPTITDVNLLIKR  541 (829)
Q Consensus       470 -------~~~~~~~~~~~~~~l~~~~~~-~~~s~~~R~v~~~w~~~~lil~~~YtA~L~s~Lt~~~~~~~I~s~~dL~~~  541 (829)
                             ..++.+++|+++++++.++.. .|++.++|+++++|||++|||+++|||+|+|+||++++.++|+|++||.++
T Consensus       554 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~  633 (823)
T 3kg2_A          554 QSSESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQ  633 (823)
T ss_dssp             -----CHHHHHHHHHHHTTTTSCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHC
T ss_pred             ccccccccccHHHHHHHHHHHHHhcCCCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHhhC
Confidence                   124678999999999888754 689999999999999999999999999999999999999999999999986


Q ss_pred             CC-cEEEEeCchHHHHHHhcCCCc-----------cceeecCChHHHHHHHh-cCCcCCceeEEEcchhHHHHHHhcC-C
Q 043276          542 GD-NVGYQKGSFVLGILKQLGFDE-----------RKLVVYNSHEECDELFQ-KGSANGGIAAAFDEIPYAKLLIGQH-C  607 (829)
Q Consensus       542 ~~-~vg~~~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~l~-~g~~~~g~~a~~~~~~~~~~~~~~~-c  607 (829)
                      +. ++|+..++....++++...+.           .....+++.+++++++. .+.    .+|++.+.+.+.|+..+. |
T Consensus       634 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~A~~~~~~~~~y~~~~~~c  709 (823)
T 3kg2_A          634 TEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKG----KYAYLLESTMNEYIEQRKPC  709 (823)
T ss_dssp             CSSEEECBSSSHHHHHHHHCCCHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTTTT----SEEEEEEHHHHHHHHTSTTC
T ss_pred             CCeeEEEEeCCcHHHHHHhccchHHHHHHHHHHhcCCccccCCHHHHHHHHhccCC----ceEEEechHHHHHHHhcCCC
Confidence            54 678887877788887643221           01123468889999996 333    689999999999988776 9


Q ss_pred             CceEEeCcccccCCceeeecCCCCchhhHHHHHHhhhccChhHHHHHHHccCCCCCCCCCC--ccccccccccchhHHHH
Q 043276          608 SKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPDAGT--VVSARSLGLNSFWGLFL  685 (829)
Q Consensus       608 ~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~~w~~~~~~c~~~~~--~~~~~~L~l~~~~g~f~  685 (829)
                      + ++++++.+...++++++||||||++.||++|+++.|+|++++|.++|+.+...|.....  .....+|+++++.|+|+
T Consensus       710 ~-l~~v~~~~~~~~~~~~~~k~spl~~~~~~~il~l~e~G~~~~~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~  788 (823)
T 3kg2_A          710 D-TMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFY  788 (823)
T ss_dssp             C-EEEESCCSSCEEECCEEETTCSSHHHHHHHHHHHHHTTHHHHHHHHHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHH
T ss_pred             c-eEEccccccccceeEeecCCChHHHHHHHHHHHHHhCCcHHHHHHhhCcCCCCCCCCCccccccCCccchhhhhhHHH
Confidence            6 88999999999999999999999999999999999999999999999988889987652  24667999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccc
Q 043276          686 IAGIAAILALIIFLAVFVHEHWNVLK  711 (829)
Q Consensus       686 il~vg~~lallvf~~E~~~~~~~~~~  711 (829)
                      ++++|+++|+++|++|++|++|++++
T Consensus       789 il~~g~~la~~vf~~E~~~~~~~~~~  814 (823)
T 3kg2_A          789 ILVGGLGLAMLVALIEFCYKSRAEAK  814 (823)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhhh
Confidence            99999999999999999998887754
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A Back     alignment and structure
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus} Back     alignment and structure
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A* Back     alignment and structure
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens} Back     alignment and structure
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A Back     alignment and structure
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A* Back     alignment and structure
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus} Back     alignment and structure
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A* Back     alignment and structure
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A* Back     alignment and structure
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A Back     alignment and structure
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A* Back     alignment and structure
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A* Back     alignment and structure
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A* Back     alignment and structure
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A* Back     alignment and structure
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A* Back     alignment and structure
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1 Back     alignment and structure
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A* Back     alignment and structure
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ... Back     alignment and structure
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A* Back     alignment and structure
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A Back     alignment and structure
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A Back     alignment and structure
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A Back     alignment and structure
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A Back     alignment and structure
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0 Back     alignment and structure
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0 Back     alignment and structure
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... Back     alignment and structure
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0 Back     alignment and structure
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} Back     alignment and structure
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} Back     alignment and structure
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Back     alignment and structure
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0 Back     alignment and structure
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Back     alignment and structure
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0 Back     alignment and structure
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A Back     alignment and structure
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0 Back     alignment and structure
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A Back     alignment and structure
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp} Back     alignment and structure
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A Back     alignment and structure
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae} Back     alignment and structure
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P* Back     alignment and structure
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} Back     alignment and structure
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* Back     alignment and structure
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima} Back     alignment and structure
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} Back     alignment and structure
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} Back     alignment and structure
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* Back     alignment and structure
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae} Back     alignment and structure
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum} Back     alignment and structure
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A* Back     alignment and structure
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A Back     alignment and structure
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* Back     alignment and structure
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A Back     alignment and structure
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A Back     alignment and structure
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A Back     alignment and structure
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei} Back     alignment and structure
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A* Back     alignment and structure
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae} Back     alignment and structure
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 Back     alignment and structure
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} Back     alignment and structure
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans} Back     alignment and structure
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A* Back     alignment and structure
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix} Back     alignment and structure
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus} Back     alignment and structure
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A Back     alignment and structure
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum} Back     alignment and structure
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B Back     alignment and structure
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni} Back     alignment and structure
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A* Back     alignment and structure
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae} Back     alignment and structure
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1 Back     alignment and structure
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa} Back     alignment and structure
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1 Back     alignment and structure
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A Back     alignment and structure
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A* Back     alignment and structure
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus} Back     alignment and structure
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli} Back     alignment and structure
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp} Back     alignment and structure
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica} Back     alignment and structure
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125} Back     alignment and structure
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I} Back     alignment and structure
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis} Back     alignment and structure
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis} Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis} Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A Back     alignment and structure
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP} Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis} Back     alignment and structure
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1 Back     alignment and structure
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A Back     alignment and structure
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1 Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis} Back     alignment and structure
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A* Back     alignment and structure
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01} Back     alignment and structure
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1 Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP} Back     alignment and structure
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A Back     alignment and structure
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A* Back     alignment and structure
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I} Back     alignment and structure
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A Back     alignment and structure
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A Back     alignment and structure
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I} Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A Back     alignment and structure
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1 Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1 Back     alignment and structure
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A* Back     alignment and structure
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A Back     alignment and structure
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A Back     alignment and structure
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A Back     alignment and structure
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus} Back     alignment and structure
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A* Back     alignment and structure
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli} Back     alignment and structure
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B} Back     alignment and structure
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} Back     alignment and structure
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A Back     alignment and structure
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str} Back     alignment and structure
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum} Back     alignment and structure
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98} Back     alignment and structure
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824} Back     alignment and structure
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G* Back     alignment and structure
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis} Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1} Back     alignment and structure
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum} Back     alignment and structure
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A Back     alignment and structure
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} Back     alignment and structure
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis} Back     alignment and structure
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima} Back     alignment and structure
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans} Back     alignment and structure
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A* Back     alignment and structure
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp} Back     alignment and structure
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A* Back     alignment and structure
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis} Back     alignment and structure
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ... Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A* Back     alignment and structure
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 829
d1dp4a_425 c.93.1.1 (A:) Hormone binding domain of the atrial 1e-22
d1ewka_477 c.93.1.1 (A:) Metabotropic glutamate receptor subt 1e-22
d1jdpa_401 c.93.1.1 (A:) Hormone binding domain of the atrial 3e-22
d2a5sa1277 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate 2e-14
d2a5sa1277 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate 4e-06
d1mqia_260 c.94.1.1 (A:) Glutamate receptor ligand binding co 6e-12
d1mqia_260 c.94.1.1 (A:) Glutamate receptor ligand binding co 4e-08
d1pb7a_289 c.94.1.1 (A:) N-methyl-D-aspartate receptor subuni 1e-08
d1pb7a_289 c.94.1.1 (A:) N-methyl-D-aspartate receptor subuni 1e-06
d2f34a1246 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor li 5e-08
d2f34a1246 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor li 2e-04
d1qo0a_373 c.93.1.1 (A:) Amide receptor/negative regulator of 9e-07
d1usga_346 c.93.1.1 (A:) Leucine-binding protein {Escherichia 2e-06
d1ii5a_226 c.94.1.1 (A:) Glutamate receptor ligand binding co 9e-06
d3ckma1317 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemo 6e-05
d1wdna_223 c.94.1.1 (A:) Glutamine-binding protein {Escherich 8e-04
d1wdna_223 c.94.1.1 (A:) Glutamine-binding protein {Escherich 0.002
d1r3jc_103 f.14.1.1 (C:) Potassium channel protein {Streptomy 0.001
d1xt8a1248 c.94.1.1 (A:10-257) Putative amino-acid transporte 0.002
>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 425 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Hormone binding domain of the atrial natriuretic peptide receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 99.5 bits (246), Expect = 1e-22
 Identities = 43/313 (13%), Positives = 89/313 (28%), Gaps = 48/313 (15%)

Query: 4   NDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVIS---P 60
           +       +TA+ +  GW     +   ++ G++           +  R      ++    
Sbjct: 129 SHVKLGDFVTALHRRLGWEHQALVLYADRLGDDRPCFFIVEGLYMRVRERLNITVNHQEF 188

Query: 61  LATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLL 120
           +  D     +L +    + RV  +   P     +   A   GL  +  V+   D     L
Sbjct: 189 VEGDPDHYPKLLRAVRRKGRVIYICSSPDAFRNLMLLALNAGLTGEDYVFFHLDVFGQSL 248

Query: 121 RTLEPSVTDS---------------MQGVIGVRPYVPKTKALENFRVRWKRKFLQE-NPS 164
           ++ +  V                   Q    +    P       F  + K    ++ N +
Sbjct: 249 KSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFT 308

Query: 165 LFDAELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSSNATDLEAFGISQNGPKLLQ 224
           + D   NI     +D       AV +    G                  G   +G  + Q
Sbjct: 309 VEDGLKNIIPASFHDGLLLYVQAVTETLAQG------------------GTVTDGENITQ 350

Query: 225 ALSSIRFRGLTGDYIFVDGQLQSSAFEIINV---NNGARGVGFWSPEKGLTQKLSSNSTT 281
            + +  F+G+TG         + + F + ++       R V  ++         +S    
Sbjct: 351 RMWNRSFQGVTGYLKIDRNGDRDTDFSLWDMDPETGAFRVVLNYNG--------TSQELM 402

Query: 282 KSKLRPIIWPGDS 294
                 + WP   
Sbjct: 403 AVSEHKLYWPLGY 415
>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 477 Back     information, alignment and structure
>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]} Length = 277 Back     information, alignment and structure
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]} Length = 277 Back     information, alignment and structure
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]} Length = 260 Back     information, alignment and structure
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]} Length = 260 Back     information, alignment and structure
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 289 Back     information, alignment and structure
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 289 Back     information, alignment and structure
>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR5 [TaxId: 10116]} Length = 246 Back     information, alignment and structure
>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR5 [TaxId: 10116]} Length = 246 Back     information, alignment and structure
>d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]} Length = 373 Back     information, alignment and structure
>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]} Length = 346 Back     information, alignment and structure
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]} Length = 226 Back     information, alignment and structure
>d3ckma1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]} Length = 317 Back     information, alignment and structure
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} Length = 223 Back     information, alignment and structure
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} Length = 223 Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103 Back     information, alignment and structure
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]} Length = 248 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query829
d1ewka_477 Metabotropic glutamate receptor subtype 1 {Rat (Ra 99.98
d1dp4a_425 Hormone binding domain of the atrial natriuretic p 99.94
d2a5sa1277 N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt 99.94
d1pb7a_289 N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt 99.92
d1wdna_223 Glutamine-binding protein {Escherichia coli [TaxId 99.91
d1mqia_260 Glutamate receptor ligand binding core {Rat (Rattu 99.91
d1jdpa_401 Hormone binding domain of the atrial natriuretic p 99.9
d1ii5a_226 Glutamate receptor ligand binding core {Synechocys 99.9
d1xt8a1248 Putative amino-acid transporter CjaA {Campylobacte 99.87
d1lsta_238 Lysine-,arginine-,ornithine-binding (LAO) protein 99.84
d2f34a1246 Glutamate receptor ligand binding core {Rat (Rattu 99.83
d1usga_346 Leucine-binding protein {Escherichia coli [TaxId: 99.76
d1qo0a_373 Amide receptor/negative regulator of the amidase o 99.69
d3ckma1317 YraM C-terminal domain {Haemophilus influenzae [Ta 99.34
d2ozza1228 Hypothetical protein YhfZ {Shigella flexneri [TaxI 97.93
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 96.71
d1al3a_237 Cofactor-binding fragment of LysR-type protein Cys 95.84
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 95.54
d2fyia1220 LysR-type regulatory protein Cbl {Escherichia coli 95.16
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 93.54
d1utha_219 LysR-type regulatory protein DntR {Burkholderia sp 91.12
d1xs5a_240 Putative lipoprotein (NlpA family) {Treponema pall 90.57
d2esna2212 Probable LysR-type transcriptional regulator PA047 90.32
d1us5a_298 Putative GluR0 ligand binding core {Thermus thermo 89.12
d1ixca2205 LysR-type regulatory protein CbnR {Ralstonia eutro 86.7
d1i6aa_212 Hydrogen peroxide-inducible genes LysR-type activa 85.83
d1vlja_398 NADH-dependent butanol dehydrogenase A (TM0820) {T 85.45
d1rrma_385 Lactaldehyde reductase FucO {Escherichia coli [Tax 82.53
>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Metabotropic glutamate receptor subtype 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.98  E-value=1.3e-31  Score=303.17  Aligned_cols=256  Identities=18%  Similarity=0.255  Sum_probs=210.9

Q ss_pred             CCCChHHHHHHHHHHHHHcCCcEEEEEEEeCccccchHHHHHHHHHhCCceeeeEEecCCCCChhHHHHHHHHhhcC--C
Q 043276            1 GALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEELIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--Q   78 (829)
Q Consensus         1 t~psD~~q~~ai~~ll~~fgW~~V~iI~~dd~yG~~~~~~l~~~l~~~gi~I~~~~~i~~~~~~~~~~~~l~~lk~~--~   78 (829)
                      |+|+|..|++|+++|+++|||++|++||++|+||+.+++.|++++++.|+||++.+.++...++.++.+.+.+|+++  .
T Consensus       169 t~psd~~~~~ai~~ll~~f~W~~V~vi~~~d~~g~~~~~~l~~~~~~~~i~v~~~~~i~~~~~~~~~~~~l~~l~~~~~~  248 (477)
T d1ewka_         169 VVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLCIAHSDKIYSNAGEKSFDRLLRKLRERLPK  248 (477)
T ss_dssp             SSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEECTTCCHHHHHHHHHHHHTTTTT
T ss_pred             ecccchhhHHHHHHHHHHcCCcEEEEEEecchhHHHHHHHHHHHHHHcCcEEEEEeeccCCCchhhHHHHHHHHhhhccC
Confidence            68999999999999999999999999999999999999999999999999999999998877788899999999865  7


Q ss_pred             CeEEEEEcChhHHHHHHHHHHHcCccccCeEEEEcCccccccccCCccccccccceEEEEeccCCChhHHHHH-------
Q 043276           79 TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVTDSMQGVIGVRPYVPKTKALENFR-------  151 (829)
Q Consensus        79 arViIv~~~~~~~~~i~~~a~~~gm~~~~~vwI~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~F~-------  151 (829)
                      +||||++++...+..++++|.++||++ ++.||++++|......... ......|.+++.+..+..+++++|+       
T Consensus       249 ~rVIv~~~~~~~~~~ll~~a~~~g~~g-~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~f~~~~~~~~~~~  326 (477)
T d1ewka_         249 ARVVVCFCEGMTVRGLLSAMRRLGVVG-EFSLIGSDGWADRDEVIEG-YEVEANGGITIKLQSPEVRSFDDYFLKLRLDT  326 (477)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHTCCS-CCEEEECTTTTTCHHHHTT-CHHHHTTCEEEEECCCCCHHHHHHHTTCCTTT
T ss_pred             ceEEEEecCHHHHHHHHHHHHHcCccC-CceEEEecccccchhhccc-cccccCcceEeeeccccchhHHHHHHhcCccc
Confidence            999999999999999999999999974 5789999998765433322 3345778899999999999888764       


Q ss_pred             --------HHHHHhhcccCCCCCc------------------cccchhHHHHHHHHHHHHHHHHHhcccCccccCCCCCC
Q 043276          152 --------VRWKRKFLQENPSLFD------------------AELNIFGLLAYDATSALAVAVEKAGITGFGFDKTNVSS  205 (829)
Q Consensus       152 --------~~w~~~~~~~~~~~~~------------------~~~~~~~~~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~  205 (829)
                              +.|+..|+|..+....                  ...+.+++++|||||++|+|||++..+.+....     
T Consensus       327 ~~~n~~~~~~w~~~f~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDAV~a~A~AL~~~~~~~~~~~~-----  401 (477)
T d1ewka_         327 NTRNPWFPEFWQHRFQCRLPGHLLENPNFKKVCTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPGHV-----  401 (477)
T ss_dssp             CCSCTTHHHHHHHHTTCBCTTCTTCCTTCCSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTCS-----
T ss_pred             CCCChHHHHHHHHHhCCCcccccccCccccccccchhhcccccccchHHHHHHHHHHHHHHHHHHHHHhhCCCCC-----
Confidence                    4699999997653211                  112457889999999999999998765432110     


Q ss_pred             CCCCCccccCCCChHHHHHHHhccceeccccc-EEEe-cCccccceEEEEEcc---CC---cEEEEEecC
Q 043276          206 NATDLEAFGISQNGPKLLQALSSIRFRGLTGD-YIFV-DGQLQSSAFEIINVN---NG---ARGVGFWSP  267 (829)
Q Consensus       206 ~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~-~~F~-~G~~~~~~y~I~n~~---~g---~~~VG~w~~  267 (829)
                        ..|.... ...|++|+++|++++|+|++|. +.|+ +||+. +.|+|+|++   ++   +++||.|++
T Consensus       402 --~~~~~~~-~~~~~~l~~~l~~v~F~G~tG~~v~Fd~nGd~~-~~y~I~n~q~~~~~~~~~~~VG~w~~  467 (477)
T d1ewka_         402 --GLCDAMK-PIDGRKLLDFLIKSSFVGVSGEEVWFDEKGDAP-GRYDIMNLQYTEANRYDYVHVGTWHE  467 (477)
T ss_dssp             --SCCGGGS-SCCHHHHHHHHHTCEEECTTSCEEECCTTSCCC-CCEEEEEEEECSSSCEEEEEEEEEET
T ss_pred             --CcccCCC-cCCHHHHHHHHhcCeeECCCCCEEEECCCCCcc-ceEEEEEEEECCCCcEEEEEEEEEeC
Confidence              1122222 2358999999999999999995 8897 99985 899999998   23   799999986
>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]} Back     information, alignment and structure
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]} Back     information, alignment and structure
>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]} Back     information, alignment and structure
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR5 [TaxId: 10116]} Back     information, alignment and structure
>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d3ckma1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]} Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1al3a_ c.94.1.1 (A:) Cofactor-binding fragment of LysR-type protein CysB {Klebsiella aerogenes [TaxId: 28451]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d2fyia1 c.94.1.1 (A:88-307) LysR-type regulatory protein Cbl {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1utha_ c.94.1.1 (A:) LysR-type regulatory protein DntR {Burkholderia sp. [TaxId: 36773]} Back     information, alignment and structure
>d1xs5a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Treponema pallidum [TaxId: 160]} Back     information, alignment and structure
>d2esna2 c.94.1.1 (A:92-303) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1us5a_ c.94.1.1 (A:) Putative GluR0 ligand binding core {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ixca2 c.94.1.1 (A:90-294) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]} Back     information, alignment and structure
>d1i6aa_ c.94.1.1 (A:) Hydrogen peroxide-inducible genes LysR-type activator OxyR, regulatory domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]} Back     information, alignment and structure