Citrus Sinensis ID: 043288

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
MAMIPSFFGNQRDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGVLTVTVPKEEVKKPELKAIEISG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccEEEEEEEccccccccEEEEEEcccEEEEEEEEEcEEEEccccEEEEEEEccEEEEEEEcccccccccEEEEEcccEEEEEEcccccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccHcccccccccccccccccccccccccccccccccccHHHHHccccccccccccEEEEEEccccccccEEEEEEcccEEEEEccccEEEccccccEEEEEEccccEEEEEEccccccHHEEEEEEcccEEEEEEcccccccccEEEEEEcc
Coil and Loop (DISEMBL)
mamipsffgnqrdsildpfsfdvwnpfkdfafpslssrfpretSAIVNTrmdwketpeahvfkvdlpgltkedvkLEIEDHRVLQITadrnveredknetWHRVERSRGKflrrfrlpengkidqvRASIEDgvltvtvpkeevkkpeLKAIEISG
Flexible Loop (DISEMBL)
mamipsffgnqrdsiLDPFSFDVWNPFKDfafpslssrfprETSAIVNtrmdwketpeahvfkvdlpgltkedvkleiedhrvlqitadrnveredknetwhrversrgkflrrfrlpengkidqvrasiedgvltvtvpkeevkkpelkaieisg
Low Complexity Region (SEG)
MAMIPSFFGNQRDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGvltvtvpkeevkkpelkAIEISG
Disordered region (IsUnstruct)
*******FGNQRDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITAD***********W*******GKFLRRFRLPENGKIDQVRASIEDGVLTVT******************
Disordered Region (DISOPRED)
MAMIPS*FGNQRDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRV******************HRVERSRGKFLRRFRLPENGKIDQVRASIEDGVLTVTVP*********KAIEIS*
Disordered Region (DISEMBL)
MAMIPSFFGNQRDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGVLTVTVPKEEVKKPELKAIEISG
Disordered Region (DISPRO)
*********N*RDSILDPFSFDVWNPFKDFAF********RETS*IVNTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGVLTVTVPKEEVKKPELKAIEIS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMIPSFFGNQRDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGVLTVTVPKEEVKKPELKAIEISG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	156	2.2.26 [Sep-21-2011]
P27880	158	18.2 kDa class I heat sho	N/A	no	1.0	0.987	0.708	4e-63
P05478	161	18.5 kDa class I heat sho	no	no	1.0	0.968	0.708	7e-63
P02519	153	17.3 kDa class I heat sho	yes	no	0.980	1.0	0.724	2e-62
P04793	153	17.5 kDa class I heat sho	no	no	0.974	0.993	0.707	7e-61
P04794	154	17.5 kDa class I heat sho	no	no	0.987	1.0	0.692	3e-60
P04795	154	17.6 kDa class I heat sho	no	no	0.987	1.0	0.660	3e-57
P27879	143	18.1 kDa class I heat sho	N/A	no	0.897	0.979	0.727	2e-56
P19243	158	18.1 kDa class I heat sho	N/A	no	1.0	0.987	0.696	9e-56
Q9LNW0	157	17.8 kDa class I heat sho	yes	no	0.980	0.974	0.637	3e-53
P30221	154	17.8 kDa class I heat sho	N/A	no	0.980	0.993	0.681	8e-53

>sp|P27880|HSP12_MEDSA 18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1

 Score =  239 bits (611), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 112/158 (70%), Positives = 139/158 (87%), Gaps = 2/158 (1%)

Query: 1   MAMIPSFFGNQRDSILDPFSFDVWNPFKDFAF--PSLSSRFPRETSAIVNTRMDWKETPE 58
           M++IPSFFG +R ++ DPFS DVW+PFKDF F   +LS+ FPRE SA V+TR+DWKETPE
Sbjct: 1   MSLIPSFFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPE 60

Query: 59  AHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLP 118
           AHVFK DLPG+ KE+VK+EIED RVLQI+ +R+VE+EDKN+ WHR+ERS GKF+RRFRLP
Sbjct: 61  AHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLP 120

Query: 119 ENGKIDQVRASIEDGVLTVTVPKEEVKKPELKAIEISG 156
           EN K+DQV+A++E+GVLTVTVPKEEVKKPE+K I+ISG
Sbjct: 121 ENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158

Medicago sativa (taxid: 3879)

>sp|P05478|HSP16_SOYBN 18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1

 Score =  239 bits (609), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 114/161 (70%), Positives = 142/161 (88%), Gaps = 5/161 (3%)

Query: 1   MAMIPSFFGNQRDSILDPFSFDVWNPFKDFAFP-SLSS----RFPRETSAIVNTRMDWKE 55
           M++IP+FFG +R+++ DPFS DVW+PFKDF FP +LSS     F RE SA V+TR+DWKE
Sbjct: 1   MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKE 60

Query: 56  TPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRF 115
           TPEAHVFK D+PGL KE+VK++IED +VLQI+ +RNVE+EDKN+TWHRVERS GKF+RRF
Sbjct: 61  TPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRF 120

Query: 116 RLPENGKIDQVRASIEDGVLTVTVPKEEVKKPELKAIEISG 156
           RLPEN K++QV+AS+E+GVLTVTVPKEEVKKP++KAIEISG
Sbjct: 121 RLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161

Glycine max (taxid: 3847)

>sp|P02519|HSP11_SOYBN 17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1

 Score =  237 bits (605), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 113/156 (72%), Positives = 136/156 (87%), Gaps = 3/156 (1%)

Query: 1   MAMIPSFFGNQRDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAH 60
           M++IPSFFG +R S+ DPFS DVW+PFKDF FPS  S    E SA V+TR+DWKETPEAH
Sbjct: 1   MSLIPSFFGGRRSSVFDPFSLDVWDPFKDFPFPSSLSA---ENSAFVSTRVDWKETPEAH 57

Query: 61  VFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPEN 120
           VFK D+PGL KE+VKLEI+D RVLQI+ +RNVE+EDKN+TWHRVERS GK +RRFRLPEN
Sbjct: 58  VFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPEN 117

Query: 121 GKIDQVRASIEDGVLTVTVPKEEVKKPELKAIEISG 156
            K+DQV+AS+E+GVLTVTVPKEE+KKP++KAI+ISG
Sbjct: 118 AKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153

Glycine max (taxid: 3847)

>sp|P04793|HSP13_SOYBN 17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1

 Score =  232 bits (592), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 111/157 (70%), Positives = 137/157 (87%), Gaps = 5/157 (3%)

Query: 1   MAMIPSFFGNQRDSILDPFSFDVWNPFKDFAFP-SLSSRFPRETSAIVNTRMDWKETPEA 59
           M++IPS FG +R ++ DPFS DVW+PFKDF FP SLS+    E SA VNTR+DWKETPEA
Sbjct: 1   MSLIPSIFGGRRSNVFDPFSLDVWDPFKDFHFPTSLSA----ENSAFVNTRVDWKETPEA 56

Query: 60  HVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPE 119
           HVF+ D+PGL KE+VK++IED RVLQI+ +RN+E+EDKN+TWHRVERS G F+RRFRLPE
Sbjct: 57  HVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPE 116

Query: 120 NGKIDQVRASIEDGVLTVTVPKEEVKKPELKAIEISG 156
           N K++QV+AS+E+GVLTVTVPKEEVKKP++KAIEISG
Sbjct: 117 NAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 153

Glycine max (taxid: 3847)

>sp|P04794|HSP14_SOYBN 17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1

 Score =  230 bits (586), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 108/156 (69%), Positives = 134/156 (85%), Gaps = 2/156 (1%)

Query: 1   MAMIPSFFGNQRDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAH 60
           M++IP FFG +R ++ DPFS D+W+PFKDF  P+  S    E SA V+TR+DWKETPEAH
Sbjct: 1   MSLIPGFFGGRRSNVFDPFSLDMWDPFKDFHVPT--SSVSAENSAFVSTRVDWKETPEAH 58

Query: 61  VFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPEN 120
           VFK D+PGL KE+VK++IED RVLQI+ +RNVE+EDKN+TWHRVERS GKF RRFRLPEN
Sbjct: 59  VFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPEN 118

Query: 121 GKIDQVRASIEDGVLTVTVPKEEVKKPELKAIEISG 156
            K+++V+AS+E+GVLTVTVPKEEVKKP++KAIEISG
Sbjct: 119 AKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEISG 154

Glycine max (taxid: 3847)

>sp|P04795|HSP15_SOYBN 17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1

 Score =  220 bits (560), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 103/156 (66%), Positives = 129/156 (82%), Gaps = 2/156 (1%)

Query: 1   MAMIPSFFGNQRDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAH 60
           M++IPS FG  R ++ DPFS D+W+PFKDF  P+  S    E SA VNTR+DWKET EAH
Sbjct: 1   MSLIPSIFGGPRSNVFDPFSLDMWDPFKDFHVPT--SSVSAENSAFVNTRVDWKETQEAH 58

Query: 61  VFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPEN 120
           V K D+PGL KE+VK++IED RVLQI+ +RNVE+EDKN+TWHRV+RS GKF+RRFRLPEN
Sbjct: 59  VLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPEN 118

Query: 121 GKIDQVRASIEDGVLTVTVPKEEVKKPELKAIEISG 156
            K++QV+A +E+GVLTVT+PKEEVKK ++K IEISG
Sbjct: 119 AKVEQVKACMENGVLTVTIPKEEVKKSDVKPIEISG 154

Glycine max (taxid: 3847)

>sp|P27879|HSP11_MEDSA 18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1

 Score =  218 bits (554), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/143 (72%), Positives = 125/143 (87%), Gaps = 3/143 (2%)

Query: 17  DPFSFDVWNPFKDFAFPSLS---SRFPRETSAIVNTRMDWKETPEAHVFKVDLPGLTKED 73
           DPFS DVW+PFKDF F + +   S FP+E SA V+TR+DWKETPEAHVFK DLPGL KE+
Sbjct: 1   DPFSLDVWDPFKDFPFTNSALSASSFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEE 60

Query: 74  VKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 133
           VK+EIED RVLQI+ +RNVE+EDKN+ WHRVERS GKF+RRFRLPEN K+DQV+A++E+G
Sbjct: 61  VKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENG 120

Query: 134 VLTVTVPKEEVKKPELKAIEISG 156
           VLTVTVPKEE+KKPE+K+IEIS 
Sbjct: 121 VLTVTVPKEEIKKPEVKSIEISS 143

Medicago sativa (taxid: 3879)

>sp|P19243|HSP11_PEA 18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1

 Score =  215 bits (548), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 110/158 (69%), Positives = 135/158 (85%), Gaps = 2/158 (1%)

Query: 1   MAMIPSFFGNQRDSILDPFSFDVWNPFKDFAFP--SLSSRFPRETSAIVNTRMDWKETPE 58
           M++IPSFF  +R ++ DPFS DVW+P KDF F   S S+ FPRE  A V+TR+DWKETPE
Sbjct: 1   MSLIPSFFSGRRSNVFDPFSLDVWDPLKDFPFSNSSPSASFPRENPAFVSTRVDWKETPE 60

Query: 59  AHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLP 118
           AHVFK DLPGL KE+VK+E+ED RVLQI+ +R+VE+EDKN+ WHRVERS GKFLRRFRLP
Sbjct: 61  AHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLP 120

Query: 119 ENGKIDQVRASIEDGVLTVTVPKEEVKKPELKAIEISG 156
           EN K+D+V+AS+E+GVLTVTVPKEE+KK E+K+IEISG
Sbjct: 121 ENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158

Pisum sativum (taxid: 3888)

>sp|Q9LNW0|HS178_ARATH 17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1

 Score =  206 bits (525), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 102/160 (63%), Positives = 129/160 (80%), Gaps = 7/160 (4%)

Query: 1   MAMIPSFFGNQR--DSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPE 58
           M++IPSFFGN R  +SI DPFS DVW+PFK+  FPS       ETSAI N R+DWKET E
Sbjct: 1   MSLIPSFFGNNRRSNSIFDPFSLDVWDPFKELQFPS---SLSGETSAITNARVDWKETAE 57

Query: 59  AHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLP 118
           AHVFK DLPG+ KE+VK+EIED  VL+I+ +R+VE+E+K +TWHRVERS G+F R+F+LP
Sbjct: 58  AHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLP 117

Query: 119 ENGKIDQVRASIEDGVLTVTVPK--EEVKKPELKAIEISG 156
           EN K+DQV+AS+E+GVLTVTVPK  E  KK ++K+I+ISG
Sbjct: 118 ENVKMDQVKASMENGVLTVTVPKVEEAKKKAQVKSIDISG 157

Arabidopsis thaliana (taxid: 3702)

>sp|P30221|HSP11_SOLLC 17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1

 Score =  205 bits (522), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 107/157 (68%), Positives = 135/157 (85%), Gaps = 4/157 (2%)

Query: 1   MAMIPSFFGNQRDS-ILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEA 59
           M++IP  FG++R S + DPFS DV++PF++  FPS +S    E+SA  NTR+DWKETPE 
Sbjct: 1   MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPSTNSG---ESSAFANTRIDWKETPEP 57

Query: 60  HVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPE 119
           HVFKVDLPGL KE+VK+E+E+ RVLQI+ +RNVE+EDKN+ WHR+ERS GKF+RRFRLPE
Sbjct: 58  HVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPE 117

Query: 120 NGKIDQVRASIEDGVLTVTVPKEEVKKPELKAIEISG 156
           N K+DQV+AS+E+GVLTVTVPKEEVKKPE+K+IEISG
Sbjct: 118 NAKMDQVKASMENGVLTVTVPKEEVKKPEVKSIEISG 154

Solanum lycopersicum (taxid: 4081)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
255558916	158	heat-shock protein, putative [Ricinus co	1.0	0.987	0.765	1e-63
255558882	157	heat-shock protein, putative [Ricinus co	1.0	0.993	0.751	9e-63
357475983	159	18.2 kDa class I heat shock protein [Med	1.0	0.981	0.716	1e-62
224104357	156	predicted protein [Populus trichocarpa]	0.987	0.987	0.765	2e-61
123556	158	RecName: Full=18.2 kDa class I heat shoc	1.0	0.987	0.708	2e-61
351725131	153	uncharacterized protein LOC100527912 [Gl	0.980	1.0	0.730	2e-61
351721881	161	18.5 kDa class I heat shock protein [Gly	1.0	0.968	0.708	4e-61
351725215	153	17.3 kDa class I heat shock protein [Gly	0.980	1.0	0.724	1e-60
335327538	157	low molecular weight heat shock protein	1.0	0.993	0.732	1e-60
351721734	153	uncharacterized protein LOC100527855 [Gl	0.974	0.993	0.713	2e-60

>gi|255558916|ref|XP_002520481.1| heat-shock protein, putative [Ricinus communis] gi|223540323|gb|EEF41894.1| heat-shock protein, putative [Ricinus communis]

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 121/158 (76%), Positives = 139/158 (87%), Gaps = 2/158 (1%)

Query: 1   MAMIPSFFGNQRDSILDPFS-FDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEA 59
           MAMIPSFFGN R SI DPFS FD+W+PFKDF FPS SS   RE SA VN RMDWKETPEA
Sbjct: 1   MAMIPSFFGNPRSSIFDPFSSFDLWDPFKDFPFPSSSSLVSRENSAFVNARMDWKETPEA 60

Query: 60  HVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPE 119
           HVFK DLPGL KE+VK+EIED RVLQI+ +RNVE+EDKN+TWHRVERSRGKFLRRFRLPE
Sbjct: 61  HVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDTWHRVERSRGKFLRRFRLPE 120

Query: 120 NGKIDQVRASIEDGVLTVTVPK-EEVKKPELKAIEISG 156
           N K+DQ++AS+E+GVLTVTVPK +E+K+P++K IEISG
Sbjct: 121 NAKMDQIKASMENGVLTVTVPKDQEMKRPDVKGIEISG 158

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558882|ref|XP_002520464.1| heat-shock protein, putative [Ricinus communis] gi|223540306|gb|EEF41877.1| heat-shock protein, putative [Ricinus communis]

 Score =  244 bits (623), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 118/157 (75%), Positives = 137/157 (87%), Gaps = 1/157 (0%)

Query: 1   MAMIPSFFGNQRDSILDPFS-FDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEA 59
           MAMIPSFF N R +I DPFS FD W+PFKDF FPS SS   R  SA +NTR+DWKETPEA
Sbjct: 1   MAMIPSFFDNPRSNIFDPFSSFDFWDPFKDFPFPSPSSLVSRGNSAFINTRIDWKETPEA 60

Query: 60  HVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPE 119
           H+FK DLPGL KE+VK+EIED RVLQI+ +RNVE+EDKN+TWHRVERS GKFLRRFRLPE
Sbjct: 61  HIFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFLRRFRLPE 120

Query: 120 NGKIDQVRASIEDGVLTVTVPKEEVKKPELKAIEISG 156
           N K+DQV+AS+E+GVLTVTVPKEE+KKP++KA+EISG
Sbjct: 121 NAKMDQVKASMENGVLTVTVPKEEIKKPDIKAVEISG 157

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475983|ref|XP_003608277.1| 18.2 kDa class I heat shock protein [Medicago truncatula] gi|87240494|gb|ABD32352.1| Heat shock protein Hsp20 [Medicago truncatula] gi|355509332|gb|AES90474.1| 18.2 kDa class I heat shock protein [Medicago truncatula] gi|388515885|gb|AFK46004.1| unknown [Medicago truncatula] gi|388519103|gb|AFK47613.1| unknown [Medicago truncatula]

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/159 (71%), Positives = 140/159 (88%), Gaps = 3/159 (1%)

Query: 1   MAMIPSFFGNQRDSILDPFSFDVWNPFKDFAFPSLS---SRFPRETSAIVNTRMDWKETP 57
           M++IPSFFG +R ++ DPFS DVW+PFKDF+FP+ +   S FP+E SA V+TR+DWKETP
Sbjct: 1   MSLIPSFFGGRRSNVFDPFSLDVWDPFKDFSFPNSALSASSFPQENSAFVSTRIDWKETP 60

Query: 58  EAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRL 117
           EAHVFK DLPGL KE+VK+EIED RVLQI+ +RNVE+EDKN  WHRVERS GKF+RRFRL
Sbjct: 61  EAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNNQWHRVERSSGKFMRRFRL 120

Query: 118 PENGKIDQVRASIEDGVLTVTVPKEEVKKPELKAIEISG 156
           PEN K+DQV+A++E+GVLTVTVPKEEVKKP++K+IEISG
Sbjct: 121 PENAKMDQVKAAMENGVLTVTVPKEEVKKPDVKSIEISG 159

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104357|ref|XP_002313410.1| predicted protein [Populus trichocarpa] gi|222849818|gb|EEE87365.1| predicted protein [Populus trichocarpa]

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 121/158 (76%), Positives = 139/158 (87%), Gaps = 4/158 (2%)

Query: 1   MAMIPSFFGNQRDSILDPFSFDVWNPFKDFAFPSLSSRFPR-ETSAIVNTRMDWKETPEA 59
           M+MIPSFFGN+R SI DPFS DVW+P KDF FPS S  FPR E SA VNTR+DWKETPEA
Sbjct: 1   MSMIPSFFGNRRSSIFDPFSLDVWDPLKDFPFPSPS--FPRDENSAFVNTRIDWKETPEA 58

Query: 60  HVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPE 119
           HVFK DLPGL KE+VK++IED RVLQI+ +RNVE+EDKN+TWHRVERS GKF RRFRLPE
Sbjct: 59  HVFKADLPGLRKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFSRRFRLPE 118

Query: 120 NGKIDQVRASIEDGVLTVTVPKEE-VKKPELKAIEISG 156
           N K++QV+AS+E+GVLTVTVPKEE VKKPE+K+IEISG
Sbjct: 119 NTKMNQVKASMENGVLTVTVPKEEAVKKPEVKSIEISG 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|123556|sp|P27880.1|HSP12_MEDSA RecName: Full=18.2 kDa class I heat shock protein gi|19618|emb|CAA41547.1| heat shock protein [Medicago sativa]

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 112/158 (70%), Positives = 139/158 (87%), Gaps = 2/158 (1%)

Query: 1   MAMIPSFFGNQRDSILDPFSFDVWNPFKDFAF--PSLSSRFPRETSAIVNTRMDWKETPE 58
           M++IPSFFG +R ++ DPFS DVW+PFKDF F   +LS+ FPRE SA V+TR+DWKETPE
Sbjct: 1   MSLIPSFFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPE 60

Query: 59  AHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLP 118
           AHVFK DLPG+ KE+VK+EIED RVLQI+ +R+VE+EDKN+ WHR+ERS GKF+RRFRLP
Sbjct: 61  AHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLP 120

Query: 119 ENGKIDQVRASIEDGVLTVTVPKEEVKKPELKAIEISG 156
           EN K+DQV+A++E+GVLTVTVPKEEVKKPE+K I+ISG
Sbjct: 121 ENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725131|ref|NP_001235546.1| uncharacterized protein LOC100527912 [Glycine max] gi|255633534|gb|ACU17125.1| unknown [Glycine max]

 Score =  239 bits (610), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 114/156 (73%), Positives = 136/156 (87%), Gaps = 3/156 (1%)

Query: 1   MAMIPSFFGNQRDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAH 60
           M++IPSFFG +R S+ DPFS DVW PFKDF FPS  S    E SA V+TR+DWKETPEAH
Sbjct: 1   MSLIPSFFGGRRSSVFDPFSLDVWEPFKDFPFPSSLSA---ENSAFVSTRVDWKETPEAH 57

Query: 61  VFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPEN 120
           VFK D+PGL KE+VKLEI+D RVLQI+ +RNVE+EDKN+TWHRVERS GKF+RRFRLPEN
Sbjct: 58  VFKADIPGLKKEEVKLEIQDDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPEN 117

Query: 121 GKIDQVRASIEDGVLTVTVPKEEVKKPELKAIEISG 156
            K+DQV+AS+E+GVLTVTVPKEE+KKP++KAI+ISG
Sbjct: 118 AKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721881|ref|NP_001235177.1| 18.5 kDa class I heat shock protein [Glycine max] gi|123544|sp|P05478.1|HSP16_SOYBN RecName: Full=18.5 kDa class I heat shock protein; AltName: Full=HSP 18.5 gi|18654|emb|CAA30154.1| unnamed protein product [Glycine max] gi|255626097|gb|ACU13393.1| unknown [Glycine max]

 Score =  239 bits (609), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 114/161 (70%), Positives = 142/161 (88%), Gaps = 5/161 (3%)

Query: 1   MAMIPSFFGNQRDSILDPFSFDVWNPFKDFAFP-SLSS----RFPRETSAIVNTRMDWKE 55
           M++IP+FFG +R+++ DPFS DVW+PFKDF FP +LSS     F RE SA V+TR+DWKE
Sbjct: 1   MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKE 60

Query: 56  TPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRF 115
           TPEAHVFK D+PGL KE+VK++IED +VLQI+ +RNVE+EDKN+TWHRVERS GKF+RRF
Sbjct: 61  TPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRF 120

Query: 116 RLPENGKIDQVRASIEDGVLTVTVPKEEVKKPELKAIEISG 156
           RLPEN K++QV+AS+E+GVLTVTVPKEEVKKP++KAIEISG
Sbjct: 121 RLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725215|ref|NP_001235293.1| 17.3 kDa class I heat shock protein [Glycine max] gi|123534|sp|P02519.1|HSP11_SOYBN RecName: Full=17.3 kDa class I heat shock protein; AltName: Full=HSP 17.3 gi|18656|emb|CAA25578.1| unnamed protein product [Glycine max] gi|255631032|gb|ACU15880.1| unknown [Glycine max] gi|224205|prf||1012218B protein 6871,heat shock

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 113/156 (72%), Positives = 136/156 (87%), Gaps = 3/156 (1%)

Query: 1   MAMIPSFFGNQRDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAH 60
           M++IPSFFG +R S+ DPFS DVW+PFKDF FPS  S    E SA V+TR+DWKETPEAH
Sbjct: 1   MSLIPSFFGGRRSSVFDPFSLDVWDPFKDFPFPSSLSA---ENSAFVSTRVDWKETPEAH 57

Query: 61  VFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPEN 120
           VFK D+PGL KE+VKLEI+D RVLQI+ +RNVE+EDKN+TWHRVERS GK +RRFRLPEN
Sbjct: 58  VFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPEN 117

Query: 121 GKIDQVRASIEDGVLTVTVPKEEVKKPELKAIEISG 156
            K+DQV+AS+E+GVLTVTVPKEE+KKP++KAI+ISG
Sbjct: 118 AKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|335327538|gb|AEH30706.1| low molecular weight heat shock protein [Gossypium hirsutum]

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 115/157 (73%), Positives = 136/157 (86%), Gaps = 1/157 (0%)

Query: 1   MAMIPSFFGNQR-DSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEA 59
           MAMIPS  GN+R  SILD FS D+W+PFKDF FPS  +    E+SA VN RMDWKETPEA
Sbjct: 1   MAMIPSLVGNRRGSSILDAFSLDLWDPFKDFPFPSSLTTRNSESSAFVNARMDWKETPEA 60

Query: 60  HVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPE 119
           HVFK DLPGL KE+VK+EIED RVLQI+ +RNVE+EDKN+TWHR+ERS GKF+RRFRLPE
Sbjct: 61  HVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDTWHRLERSSGKFMRRFRLPE 120

Query: 120 NGKIDQVRASIEDGVLTVTVPKEEVKKPELKAIEISG 156
           N K+DQV+AS+++GVLTVTVPK+EVKKP++KAIEISG
Sbjct: 121 NVKMDQVKASMDNGVLTVTVPKQEVKKPDVKAIEISG 157

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721734|ref|NP_001238499.1| uncharacterized protein LOC100527855 [Glycine max] gi|255633382|gb|ACU17048.1| unknown [Glycine max]

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 112/157 (71%), Positives = 139/157 (88%), Gaps = 5/157 (3%)

Query: 1   MAMIPSFFGNQRDSILDPFSFDVWNPFKDFAFP-SLSSRFPRETSAIVNTRMDWKETPEA 59
           M++IPSFFG +R ++LDPFS DVW+PFKDF FP SLS+    E SA V+TR+DWKETPEA
Sbjct: 1   MSLIPSFFGGRRSNVLDPFSLDVWDPFKDFPFPTSLSA----ENSAFVSTRVDWKETPEA 56

Query: 60  HVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPE 119
           H+FK D+PGL KE+VKLEI+D R+LQI+ +RNVE+EDKN+TWHRVERS GKF+R FRLP+
Sbjct: 57  HLFKADIPGLKKEEVKLEIQDDRILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPD 116

Query: 120 NGKIDQVRASIEDGVLTVTVPKEEVKKPELKAIEISG 156
           N K+DQV+AS+E+GVLTVTVPKEE+KKP++KAIEISG
Sbjct: 117 NAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 153

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
TAIR|locus:2042977	153	AT2G29500 "AT2G29500" [Arabido	0.974	0.993	0.598	2.1e-45
TAIR|locus:2024997	157	AT1G07400 [Arabidopsis thalian	0.833	0.828	0.644	1.7e-43
TAIR|locus:2075256	156	HSP17.4 "heat shock protein 17	1.0	1.0	0.5	1.7e-43
TAIR|locus:2025921	155	AT1G59860 [Arabidopsis thalian	0.814	0.819	0.632	4e-42
TAIR|locus:2174269	161	HSP18.2 "heat shock protein 18	1.0	0.968	0.509	1.7e-41
TAIR|locus:2024862	157	AT1G53540 [Arabidopsis thalian	1.0	0.993	0.503	2e-40
UNIPROTKB|P27777	150	HSP16.9A "16.9 kDa class I hea	0.929	0.966	0.517	1.1e-37
UNIPROTKB|Q943E6	150	HSP16.9B "16.9 kDa class I hea	0.929	0.966	0.517	1.5e-37
UNIPROTKB|Q943E7	149	HSP16.9C "16.9 kDa class I hea	0.923	0.966	0.530	3e-37
UNIPROTKB|P31673	154	HSP17.4 "17.4 kDa class I heat	0.788	0.798	0.598	6.3e-37

TAIR|locus:2042977 AT2G29500 "AT2G29500" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 94/157 (59%), Positives = 116/157 (73%)

Query:     1 MAMIPSFFGNQRDS-ILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEA 59
             M+MIPSFF N R S I DPFS DVW+PFK+    SLS    RE SAIVN R+DW+ETPEA
Sbjct:     1 MSMIPSFFNNNRRSNIFDPFSLDVWDPFKELTSSSLS----RENSAIVNARVDWRETPEA 56

Query:    60 HVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPE 119
             HVFK DLPGL KE+VK+EIE+  VL+I+ +R+VE+EDKN+TWHRVERS G+F RRFRLPE
Sbjct:    57 HVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPE 116

Query:   120 NGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 156
             N K+DQV+A++E+G                 +I+ISG
Sbjct:   117 NVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0009408 "response to heat" evidence=IEP;ISS;RCA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2024997 AT1G07400 [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 87/135 (64%), Positives = 110/135 (81%)

Query:     1 MAMIPSFFGNQR--DSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPE 58
             M++IPSFFGN R  +SI DPFS DVW+PFK+  FPS  S    ETSAI N R+DWKET E
Sbjct:     1 MSLIPSFFGNNRRSNSIFDPFSLDVWDPFKELQFPSSLSG---ETSAITNARVDWKETAE 57

Query:    59 AHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLP 118
             AHVFK DLPG+ KE+VK+EIED  VL+I+ +R+VE+E+K +TWHRVERS G+F R+F+LP
Sbjct:    58 AHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLP 117

Query:   119 ENGKIDQVRASIEDG 133
             EN K+DQV+AS+E+G
Sbjct:   118 ENVKMDQVKASMENG 132

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0009408 "response to heat" evidence=ISS

GO:0006979 "response to oxidative stress" evidence=IEP

TAIR|locus:2075256 HSP17.4 "heat shock protein 17.4" [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 78/156 (50%), Positives = 115/156 (73%)

Query:     1 MAMIPSFFGNQRDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAH 60
             M+++PSFFG +R ++ DPFS DVW+PF+ F  P L++   ++ +A  N ++DW+ETPEAH
Sbjct:     1 MSLVPSFFGGRRTNVFDPFSLDVWDPFEGFLTPGLTNAPAKDVAAFTNAKVDWRETPEAH 60

Query:    61 VFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPEN 120
             VFK D+PGL KE+VK+E+ED  +LQI+ +R+ E E+K++TWHRVERS GKF+RRFRLPEN
Sbjct:    61 VFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPEN 120

Query:   121 GKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 156
              K+++V+AS+E+G                 +++ISG
Sbjct:   121 AKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156

GO:0005737 "cytoplasm" evidence=ISM

GO:0009408 "response to heat" evidence=IEP

TAIR|locus:2025921 AT1G59860 [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 86/136 (63%), Positives = 108/136 (79%)

Query:     1 MAMIPSFFGNQR---DSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETP 57
             M++IPSFFGN R   ++I DPFS DVW+PFK+  FPS SS      SAI N R+DWKET 
Sbjct:     1 MSLIPSFFGNNRRINNNIFDPFSLDVWDPFKELQFPSSSS------SAIANARVDWKETA 54

Query:    58 EAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRL 117
             EAHVFK DLPG+ KE+VK+EIED  VL+I+ +R+VE+E+K +TWHRVERS G F R+FRL
Sbjct:    55 EAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRL 114

Query:   118 PENGKIDQVRASIEDG 133
             PEN K+DQV+AS+E+G
Sbjct:   115 PENVKMDQVKASMENG 130

GO:0005737 "cytoplasm" evidence=ISM

GO:0009408 "response to heat" evidence=IEP;ISS

GO:0006457 "protein folding" evidence=IDA

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009651 "response to salt stress" evidence=IDA

GO:0051259 "protein oligomerization" evidence=IDA

TAIR|locus:2174269 HSP18.2 "heat shock protein 18.2" [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 81/159 (50%), Positives = 113/159 (71%)

Query:     1 MAMIPSFFGNQRDSILDPFSFDVWNPFKDFAFPS---LSSRFPRETSAIVNTRMDWKETP 57
             M++IPS FG +R ++ DPFS D+W+PF+ F  PS    ++   R+ +A  N R+DWKETP
Sbjct:     1 MSLIPSIFGGRRSNVFDPFSQDLWDPFEGFFTPSSALANASTARDVAAFTNARVDWKETP 60

Query:    58 EAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRL 117
             EAHVFK DLPGL KE+VK+E+ED  VLQI+ +R+ E E+KN+ WHRVER+ GKF+RRFRL
Sbjct:    61 EAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRL 120

Query:   118 PENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 156
             PEN K+++V+A++E+G                 +I+ISG
Sbjct:   121 PENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDISG 159

GO:0005737 "cytoplasm" evidence=ISM

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0010286 "heat acclimation" evidence=IEP

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

TAIR|locus:2024862 AT1G53540 [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 79/157 (50%), Positives = 111/157 (70%)

Query:     1 MAMIPSFFGNQRDSILDPFSFDVWNPFKDFAFPSLSSRFPR-ETSAIVNTRMDWKETPEA 59
             M++IPS FG +R ++ DPFS DV++PF+ F  PS  +  P  + +A  N ++DW+ETPEA
Sbjct:     1 MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAPAMDVAAFTNAKVDWRETPEA 60

Query:    60 HVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPE 119
             HVFK DLPGL KE+VK+E+ED  +LQI+ +R+ E E+KN+ WHRVERS GKF RRFRLPE
Sbjct:    61 HVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPE 120

Query:   120 NGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 156
             N K+++++AS+E+G                 +I+ISG
Sbjct:   121 NAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157

GO:0005737 "cytoplasm" evidence=ISM

GO:0009408 "response to heat" evidence=ISS;RCA

GO:0006457 "protein folding" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

UNIPROTKB|P27777 HSP16.9A "16.9 kDa class I heat shock protein 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 76/147 (51%), Positives = 102/147 (69%)

Query:    11 QRDSILDPFSFDVWNPFKDFAFPSL-SSRFPRETSAIVNTRMDWKETPEAHVFKVDLPGL 69
             +R ++ DPFS D+W+PF D  F S+  +    +T+A  N R+DWKETPE+HVFK DLPG+
Sbjct:     5 RRSNVFDPFSLDLWDPF-DSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGV 63

Query:    70 TKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRAS 129
              KE+VK+E+E+  VL I+  R+ E+EDKN+ WHRVERS G+F+RRFRLPEN K+DQV+A 
Sbjct:    64 KKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAG 123

Query:   130 IEDGXXXXXXXXXXXXXXXXXAIEISG 156
             +E+G                 AIEISG
Sbjct:   124 LENGVLTVTVPKAEVKKPEVKAIEISG 150

GO:0009408 "response to heat" evidence=IEP;IDA

GO:0051259 "protein oligomerization" evidence=IDA

UNIPROTKB|Q943E6 HSP16.9B "16.9 kDa class I heat shock protein 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 76/147 (51%), Positives = 102/147 (69%)

Query:    11 QRDSILDPFSFDVWNPFKDFAFPSL-SSRFPRETSAIVNTRMDWKETPEAHVFKVDLPGL 69
             +R ++ DPFS D+W+PF D  F S+  +    +T+A  N R+DWKETPE+HVFK DLPG+
Sbjct:     5 RRSNVFDPFSLDLWDPF-DSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGV 63

Query:    70 TKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRAS 129
              KE+VK+E+E+  VL I+  R+ E+EDKN+ WHRVERS G+F+RRFRLPEN K+DQV+A 
Sbjct:    64 KKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAG 123

Query:   130 IEDGXXXXXXXXXXXXXXXXXAIEISG 156
             +E+G                 AIEISG
Sbjct:   124 MENGVLTVTVPKAEVKKPEVKAIEISG 150

GO:0009408 "response to heat" evidence=IEP

UNIPROTKB|Q943E7 HSP16.9C "16.9 kDa class I heat shock protein 3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 78/147 (53%), Positives = 103/147 (70%)

Query:    11 QRDSILDPFSFDVWNPFKDFAFPSL-SSRFPRETSAIVNTRMDWKETPEAHVFKVDLPGL 69
             +R ++ DPF+ D W+PF D  F SL  +   R+T+A  N R+DWKETPE+HVFK DLPG+
Sbjct:     5 RRSNVFDPFA-DFWDPF-DGVFRSLVPATSDRDTAAFANARVDWKETPESHVFKADLPGV 62

Query:    70 TKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRAS 129
              KE+VK+E+E+  VL I+  R+ E+EDKN+ WHRVERS G+F+RRFRLPEN K+DQV+AS
Sbjct:    63 KKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAS 122

Query:   130 IEDGXXXXXXXXXXXXXXXXXAIEISG 156
             +E+G                 AIEISG
Sbjct:   123 MENGVLTVTVPKAEVKKPEVKAIEISG 149

GO:0009408 "response to heat" evidence=IEP

UNIPROTKB|P31673 HSP17.4 "17.4 kDa class I heat shock protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 76/127 (59%), Positives = 96/127 (75%)

Query:    11 QRDSILDPFSFDVWNPFKDFAFPSLS-SRFPRETS---AIVNTRMDWKETPEAHVFKVDL 66
             +R ++ DPFS D+W+PF  F F S S S FPR  S   A    R+DWKETPEAHVFK D+
Sbjct:     5 RRSNVFDPFSLDLWDPFDGFPFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFKADV 64

Query:    67 PGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQV 126
             PGL KE+VK+E+ED  VLQI+ +R  E+E+K + WHRVERS GKFLRRFRLPEN K +Q+
Sbjct:    65 PGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQI 124

Query:   127 RASIEDG 133
             +AS+E+G
Sbjct:   125 KASMENG 131

GO:0009408 "response to heat" evidence=IEP

GO:0042542 "response to hydrogen peroxide" evidence=IEP

GO:0045471 "response to ethanol" evidence=IEP

GO:0046685 "response to arsenic-containing substance" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0046688 "response to copper ion" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84Q77	HS17A_ORYSJ	No assigned EC number	0.5668	0.9358	0.9068	yes	no
Q9LNW0	HS178_ARATH	No assigned EC number	0.6375	0.9807	0.9745	yes	no
P19243	HSP11_PEA	No assigned EC number	0.6962	1.0	0.9873	N/A	no
P30221	HSP11_SOLLC	No assigned EC number	0.6815	0.9807	0.9935	N/A	no
P27880	HSP12_MEDSA	No assigned EC number	0.7088	1.0	0.9873	N/A	no
P12810	HS16A_WHEAT	No assigned EC number	0.6107	0.9230	0.9536	N/A	no
O82012	HSP12_SOLPE	No assigned EC number	0.6751	0.9807	0.9935	N/A	no
O82011	HSP11_SOLPE	No assigned EC number	0.6560	0.9807	0.9935	N/A	no
P04793	HSP13_SOYBN	No assigned EC number	0.7070	0.9743	0.9934	no	no
P02519	HSP11_SOYBN	No assigned EC number	0.7243	0.9807	1.0	yes	no
Q41560	HS16B_WHEAT	No assigned EC number	0.5973	0.9230	0.9536	N/A	no
P05478	HSP16_SOYBN	No assigned EC number	0.7080	1.0	0.9689	no	no
P27879	HSP11_MEDSA	No assigned EC number	0.7272	0.8974	0.9790	N/A	no
Q05832	HSP11_CHERU	No assigned EC number	0.5617	0.9743	0.9440	N/A	no
P27397	HSP12_DAUCA	No assigned EC number	0.6163	1.0	0.9811	N/A	no
P27396	HSP11_DAUCA	No assigned EC number	0.6560	1.0	0.9936	N/A	no
P30693	HSP11_HELAN	No assigned EC number	0.6305	0.9743	0.9934	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_IX3982 hypothetical protein (156 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	156
cd06472	92	cd06472, ACD_ScHsp26_like, Alpha crystallin domain	1e-46
pfam00011	101	pfam00011, HSP20, Hsp20/alpha crystallin family	2e-34
cd06464	88	cd06464, ACD_sHsps-like, Alpha-crystallin domain (	2e-27
COG0071	146	COG0071, IbpA, Molecular chaperone (small heat sho	5e-22
cd06471	93	cd06471, ACD_LpsHSP_like, Group of bacterial prote	3e-20
cd00298	80	cd00298, ACD_sHsps_p23-like, This domain family in	2e-19
cd06526	83	cd06526, metazoan_ACD, Alpha-crystallin domain (AC	4e-08
cd06470	90	cd06470, ACD_IbpA-B_like, Alpha-crystallin domain	3e-05

>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins

 Score =  146 bits (370), Expect = 1e-46
 Identities = 62/92 (67%), Positives = 77/92 (83%)

Query: 50  RMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRG 109
           R+DWKETPEAHVFK D+PG+ KEDVK+E+ED RVL+I+ +R  E E K + WHRVERS G
Sbjct: 1   RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSG 60

Query: 110 KFLRRFRLPENGKIDQVRASIEDGVLTVTVPK 141
           +F+RRFRLPEN   D+V+A +E+GVLTVTVPK
Sbjct: 61  RFVRRFRLPENADADEVKAFLENGVLTVTVPK 92

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative stress. Also belonging to this group is wheat HSP16.9 which differs in quaternary structure from the shell-type particles of ScHsp26, it assembles as a dodecameric double disc, with each disc organized as a trimer of dimers. Length = 92

>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family

 Score =  115 bits (290), Expect = 2e-34
 Identities = 46/104 (44%), Positives = 70/104 (67%), Gaps = 3/104 (2%)

Query: 52  DWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKF 111
           D KE  +A V K+D+PG   E++K+++ED+RVL +      E+E++++   R ERS   F
Sbjct: 1   DIKEDKDAFVVKLDVPGFKPEELKVKVEDNRVL-VKGKH--EKEEEDDHGLRSERSYRSF 57

Query: 112 LRRFRLPENGKIDQVRASIEDGVLTVTVPKEEVKKPELKAIEIS 155
            R+F LPEN   D+V+AS++DGVLTVTVPK E  + + + I+I 
Sbjct: 58  SRKFVLPENADPDKVKASLKDGVLTVTVPKLEPPEKKPRRIQIQ 101

Length = 101

>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)

 Score = 97.6 bits (244), Expect = 2e-27
 Identities = 46/90 (51%), Positives = 65/90 (72%), Gaps = 2/90 (2%)

Query: 52  DWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKF 111
           D  ET +A+V + DLPG  KED+K+E+ED  VL I+ +R  E E++ E + R ERS G F
Sbjct: 1   DVYETDDAYVVEADLPGFKKEDIKVEVED-GVLTISGEREEEEEEE-ENYLRRERSYGSF 58

Query: 112 LRRFRLPENGKIDQVRASIEDGVLTVTVPK 141
            R FRLPE+   D+++AS+E+GVLT+T+PK
Sbjct: 59  SRSFRLPEDVDPDKIKASLENGVLTITLPK 88

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. Length = 88

>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]

 Score = 85.5 bits (212), Expect = 5e-22
 Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 3/140 (2%)

Query: 16  LDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLPGLTKEDVK 75
            D F     +P  D  F    +      +      +D +ET + +    +LPG+ KED++
Sbjct: 10  FDFFPLLRDSPGFDRLFREFGNLPESRPTGTP--PVDIEETDDEYRITAELPGVDKEDIE 67

Query: 76  LEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGVL 135
           + +E    L I  +R  E E++ E + R ER+ G+F R FRLPE    + ++A  ++G+L
Sbjct: 68  ITVEG-NTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKYKNGLL 126

Query: 136 TVTVPKEEVKKPELKAIEIS 155
           TVT+PK E ++ + K IEI 
Sbjct: 127 TVTLPKAEPEEKKPKRIEIE 146

Length = 146

>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18

 Score = 79.4 bits (197), Expect = 3e-20
 Identities = 38/94 (40%), Positives = 58/94 (61%), Gaps = 4/94 (4%)

Query: 50  RMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRN--VEREDKNETWHRVERS 107
           + D KET + ++ + DLPG  KED+KL+ +D   L I+A R+   + +DK   + R ER 
Sbjct: 2   KTDIKETDDEYIVEADLPGFKKEDIKLDYKDG-YLTISAKRDESKDEKDKKGNYIRRERY 60

Query: 108 RGKFLRRFRLPENGKIDQVRASIEDGVLTVTVPK 141
            G F R F LP N   ++++A  E+GVL +T+PK
Sbjct: 61  YGSFSRSFYLP-NVDEEEIKAKYENGVLKITLPK 93

5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic membrane. Length = 93

>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

 Score = 77.2 bits (191), Expect = 2e-19
 Identities = 40/89 (44%), Positives = 56/89 (62%), Gaps = 9/89 (10%)

Query: 53  WKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFL 112
           W +T +  V  VDLPG+ KED+K+E+ED  VL I+  R  E E         ERS G+F 
Sbjct: 1   WYQTDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEEEE--------RERSYGEFE 51

Query: 113 RRFRLPENGKIDQVRASIEDGVLTVTVPK 141
           R F LPE+   ++ +AS+E+GVL +T+PK
Sbjct: 52  RSFELPEDVDPEKSKASLENGVLEITLPK 80

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). Length = 80

>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)

 Score = 47.5 bits (114), Expect = 4e-08
 Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 9/80 (11%)

Query: 63  KVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGK 122
            +D+ G   E++K+++ D++++ +      + E++ +    V R    F RR++LPE   
Sbjct: 12  TLDVKGFKPEELKVKVSDNKLV-VEG----KHEEREDEHGYVSRE---FTRRYQLPEGVD 63

Query: 123 IDQVRASI-EDGVLTVTVPK 141
            D V +S+  DGVLT+  PK
Sbjct: 64  PDSVTSSLSSDGVLTIEAPK 83

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. Length = 83

>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins

 Score = 39.8 bits (94), Expect = 3e-05
 Identities = 20/74 (27%), Positives = 43/74 (58%), Gaps = 4/74 (5%)

Query: 64  VDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKI 123
           + + G +++D+++E+E+   L +T  +  E  ++ E  HR   ++  F R F L ++ K+
Sbjct: 17  LAVAGFSEDDLEIEVEN-NQLTVTGKKADEENEEREYLHR-GIAKRAFERSFNLADHVKV 74

Query: 124 DQVRASIEDGVLTV 137
               A +E+G+LT+
Sbjct: 75  KG--AELENGLLTI 86

IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 600-kDa structures. This elevated activity seen under heat shock conditions is retained for an extended period of time after the temperature is returned to normal. IbpA also forms multimers. Length = 90

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	156
PRK11597	142	heat shock chaperone IbpB; Provisional	99.97
PRK10743	137	heat shock protein IbpA; Provisional	99.96
COG0071	146	IbpA Molecular chaperone (small heat shock protein	99.96
cd06472	92	ACD_ScHsp26_like Alpha crystallin domain (ACD) fou	99.95
PF00011	102	HSP20: Hsp20/alpha crystallin family This prints e	99.94
cd06471	93	ACD_LpsHSP_like Group of bacterial proteins contai	99.93
cd06470	90	ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun	99.92
cd06497	86	ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai	99.91
cd06478	83	ACD_HspB4-5-6 Alpha-crystallin domain found in alp	99.89
cd06498	84	ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai	99.89
cd06479	81	ACD_HspB7_like Alpha crystallin domain (ACD) found	99.89
cd06475	86	ACD_HspB1_like Alpha crystallin domain (ACD) found	99.87
cd06476	83	ACD_HspB2_like Alpha crystallin domain (ACD) found	99.87
cd06481	87	ACD_HspB9_like Alpha crystallin domain (ACD) found	99.87
cd06464	88	ACD_sHsps-like Alpha-crystallin domain (ACD) of al	99.87
cd06482	87	ACD_HspB10 Alpha crystallin domain (ACD) found in	99.86
cd06477	83	ACD_HspB3_Like Alpha crystallin domain (ACD) found	99.85
cd06526	83	metazoan_ACD Alpha-crystallin domain (ACD) of meta	99.84
KOG0710	196	consensus Molecular chaperone (small heat-shock pr	99.79
cd06480	91	ACD_HspB8_like Alpha-crystallin domain (ACD) found	99.75
KOG3591	173	consensus Alpha crystallins [Posttranslational mod	99.74
cd00298	80	ACD_sHsps_p23-like This domain family includes the	99.59
cd06469	78	p23_DYX1C1_like p23_like domain found in proteins	99.36
cd06463	84	p23_like Proteins containing this p23_like domain	99.06
PF05455	177	GvpH: GvpH; InterPro: IPR008633 This family consis	99.05
cd06466	84	p23_CS_SGT1_like p23_like domain similar to the C-	98.81
PF04969	79	CS: CS domain; InterPro: IPR017447 The function of	98.6
cd06465	108	p23_hB-ind1_like p23_like domain found in human (h	98.31
PF08190	328	PIH1: pre-RNA processing PIH1/Nop17	98.19
cd06489	84	p23_CS_hSgt1_like p23_like domain similar to the C	98.16
cd06488	87	p23_melusin_like p23_like domain similar to the C-	97.98
cd06468	92	p23_CacyBP p23_like domain found in proteins simil	97.91
cd06467	85	p23_NUDC_like p23_like domain of NUD (nuclear dist	97.83
cd06493	85	p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear	97.65
cd00237	106	p23 p23 binds heat shock protein (Hsp)90 and parti	97.49
cd06494	93	p23_NUDCD2_like p23-like NUD (nuclear distribution	97.28
KOG1309	196	consensus Suppressor of G2 allele of skp1 [Signal	97.08
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.06
cd06490	87	p23_NCB5OR p23_like domain found in NAD(P)H cytoch	96.45
cd06492	87	p23_mNUDC_like p23-like NUD (nuclear distribution)	95.84
cd06495	102	p23_NUDCD3_like p23-like NUD (nuclear distribution	94.06
PF14913	194	DPCD: DPCD protein family	93.41
KOG3158	180	consensus HSP90 co-chaperone p23 [Posttranslationa	87.99
cd06482	87	ACD_HspB10 Alpha crystallin domain (ACD) found in	85.83
PF13349	166	DUF4097: Domain of unknown function (DUF4097)	84.66
cd06470	90	ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun	82.33

>PRK11597 heat shock chaperone IbpB; Provisional

Probab=99.97  E-value=3.4e-30  Score=186.39  Aligned_cols=105  Identities=19%  Similarity=0.314  Sum_probs=93.5

Q ss_pred             ccceeEEEE-CCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCc
Q 043288           47 VNTRMDWKE-TPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQ  125 (156)
Q Consensus        47 ~~p~~di~e-~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~  125 (156)
                      ..|++||+| ++++|+|+++|||++++||+|.+++ +.|+|+|++..+  .++.+|+++||++|.|+|+|.||++||.+ 
T Consensus        31 ~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~-~~LtI~ge~~~~--~~~~~~~~~Er~~g~F~R~f~LP~~vd~~-  106 (142)
T PRK11597         31 SFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEG-TRLTVKGTPEQP--EKEVKWLHQGLVNQPFSLSFTLAENMEVS-  106 (142)
T ss_pred             CCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEEC-CEEEEEEEEccc--cCCCcEEEEEEeCcEEEEEEECCCCcccC-
Confidence            458999998 5779999999999999999999997 599999997643  35678999999999999999999999998 


Q ss_pred             eEEEEeCCEEEEEEeccCCCCCCeeEEecCC
Q 043288          126 VRASIEDGVLTVTVPKEEVKKPELKAIEISG  156 (156)
Q Consensus       126 i~A~~~nGvL~I~lPK~~~~~~~~~~I~I~~  156 (156)
                       +|+|+||||+|+|||..++..++++|+|+.
T Consensus       107 -~A~~~nGVL~I~lPK~~~~~~~~rkI~I~~  136 (142)
T PRK11597        107 -GATFVNGLLHIDLIRNEPEAIAPQRIAISE  136 (142)
T ss_pred             -cCEEcCCEEEEEEeccCccccCCcEEEECC
Confidence             799999999999999866666779999974

>PRK10743 heat shock protein IbpA; Provisional

Probab=99.96  E-value=3.1e-29  Score=180.66  Aligned_cols=102  Identities=18%  Similarity=0.322  Sum_probs=92.3

Q ss_pred             ceeEEEE-CCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceE
Q 043288           49 TRMDWKE-TPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVR  127 (156)
Q Consensus        49 p~~di~e-~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~  127 (156)
                      |++||.+ ++++|.|.++|||++++||+|++.+ +.|+|+|++..+.  ++.+|+++||.+|+|+|+|.||++||.+  +
T Consensus        35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~-~~LtI~ge~~~~~--~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~  109 (137)
T PRK10743         35 PPYNVELVDENHYRIAIAVAGFAESELEITAQD-NLLVVKGAHADEQ--KERTYLYQGIAERNFERKFQLAENIHVR--G  109 (137)
T ss_pred             CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEECccc--cCCcEEEEEEECCEEEEEEECCCCcccC--c
Confidence            8899994 8999999999999999999999998 5999999976543  4568999999999999999999999998  5


Q ss_pred             EEEeCCEEEEEEeccCCCCCCeeEEecC
Q 043288          128 ASIEDGVLTVTVPKEEVKKPELKAIEIS  155 (156)
Q Consensus       128 A~~~nGvL~I~lPK~~~~~~~~~~I~I~  155 (156)
                      |+|+||||+|++||..++..++++|+|+
T Consensus       110 A~~~dGVL~I~lPK~~~~~~~~r~I~I~  137 (137)
T PRK10743        110 ANLVNGLLYIDLERVIPEAKKPRRIEIN  137 (137)
T ss_pred             CEEeCCEEEEEEeCCCccccCCeEEeeC
Confidence            9999999999999986666777999985

>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=8.4e-29  Score=180.46  Aligned_cols=109  Identities=37%  Similarity=0.607  Sum_probs=101.7

Q ss_pred             cccceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCc
Q 043288           46 IVNTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQ  125 (156)
Q Consensus        46 ~~~p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~  125 (156)
                      .+.|++||++++++|.|.++|||++++||+|++.+ +.|+|+|++..+...+...++++|+.+|.|+|+|.||..|+.+.
T Consensus        38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~-~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~  116 (146)
T COG0071          38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVEG-NTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEV  116 (146)
T ss_pred             CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEEC-CEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccc
Confidence            45799999999999999999999999999999997 59999999988767778899999999999999999999999999


Q ss_pred             eEEEEeCCEEEEEEeccCCCCCCeeEEecC
Q 043288          126 VRASIEDGVLTVTVPKEEVKKPELKAIEIS  155 (156)
Q Consensus       126 i~A~~~nGvL~I~lPK~~~~~~~~~~I~I~  155 (156)
                      ++|+|+||+|+|+|||..++..+.++|+|+
T Consensus       117 ~~A~~~nGvL~I~lpk~~~~~~~~~~i~I~  146 (146)
T COG0071         117 IKAKYKNGLLTVTLPKAEPEEKKPKRIEIE  146 (146)
T ss_pred             eeeEeeCcEEEEEEeccccccccCceeecC
Confidence            999999999999999999887677888885

>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins

Probab=99.95  E-value=1.8e-27  Score=160.72  Aligned_cols=92  Identities=67%  Similarity=1.153  Sum_probs=86.0

Q ss_pred             eeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEE
Q 043288           50 RMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRAS  129 (156)
Q Consensus        50 ~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~  129 (156)
                      ++||+|++++|+|.++|||+++++|+|++.+++.|+|+|++..+...++..++++|+.+|.|.|+|.||..||.++|+|+
T Consensus         1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~   80 (92)
T cd06472           1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF   80 (92)
T ss_pred             CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence            47999999999999999999999999999865689999998776666678999999999999999999999999999999


Q ss_pred             EeCCEEEEEEec
Q 043288          130 IEDGVLTVTVPK  141 (156)
Q Consensus       130 ~~nGvL~I~lPK  141 (156)
                      |+||+|+|++||
T Consensus        81 ~~nGvL~I~lPK   92 (92)
T cd06472          81 LENGVLTVTVPK   92 (92)
T ss_pred             EECCEEEEEecC
Confidence            999999999998

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st

>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry

Probab=99.94  E-value=1.3e-25  Score=153.92  Aligned_cols=101  Identities=43%  Similarity=0.730  Sum_probs=84.3

Q ss_pred             EEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEe
Q 043288           52 DWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIE  131 (156)
Q Consensus        52 di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~  131 (156)
                      ||.+++++|.|.++|||+++++|+|+++++ .|+|+|++.  ....+..++..|++.+.|.|+|.||.++|.++|+|.|+
T Consensus         1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~-~L~I~g~~~--~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~   77 (102)
T PF00011_consen    1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDN-KLVISGKRK--EEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYE   77 (102)
T ss_dssp             EEEESSSEEEEEEE-TTS-GGGEEEEEETT-EEEEEEEEE--GEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEET
T ss_pred             CeEECCCEEEEEEECCCCChHHEEEEEecC-ccceeceee--eeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEec
Confidence            799999999999999999999999999984 999999998  33455678889999999999999999999999999999


Q ss_pred             CCEEEEEEeccCCCCC-CeeEEecC
Q 043288          132 DGVLTVTVPKEEVKKP-ELKAIEIS  155 (156)
Q Consensus       132 nGvL~I~lPK~~~~~~-~~~~I~I~  155 (156)
                      ||+|+|++||...... ..++|+|+
T Consensus        78 ~GvL~I~~pk~~~~~~~~~~~I~I~  102 (102)
T PF00011_consen   78 NGVLTITIPKKEEEEDSQPKRIPIK  102 (102)
T ss_dssp             TSEEEEEEEBSSSCTTSSSCEE-ET
T ss_pred             CCEEEEEEEccccccCCCCeEEEeC
Confidence            9999999999987643 77999986

; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....

>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18

Probab=99.93  E-value=2.6e-25  Score=150.32  Aligned_cols=91  Identities=42%  Similarity=0.705  Sum_probs=82.7

Q ss_pred             ceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEecccc--CCCccEEEEeeeceEEEEEEECCCCCccCce
Q 043288           49 TRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVERE--DKNETWHRVERSRGKFLRRFRLPENGKIDQV  126 (156)
Q Consensus        49 p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~--~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i  126 (156)
                      +++||+|++++|+|.++|||+++++|+|.+.+ +.|+|+|++....+  ..+..++++|+.+|+|.|+|.|| .++.+.|
T Consensus         1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~-~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i   78 (93)
T cd06471           1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKD-GYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEI   78 (93)
T ss_pred             CceeEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHC
Confidence            36899999999999999999999999999997 59999999976433  23458999999999999999999 7999999


Q ss_pred             EEEEeCCEEEEEEec
Q 043288          127 RASIEDGVLTVTVPK  141 (156)
Q Consensus       127 ~A~~~nGvL~I~lPK  141 (156)
                      +|+|+||+|+|++||
T Consensus        79 ~A~~~dGvL~I~lPK   93 (93)
T cd06471          79 KAKYENGVLKITLPK   93 (93)
T ss_pred             EEEEECCEEEEEEcC
Confidence            999999999999998

5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me

>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins

Probab=99.92  E-value=1.8e-24  Score=145.61  Aligned_cols=89  Identities=20%  Similarity=0.439  Sum_probs=81.8

Q ss_pred             ceeEEEECC-CeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceE
Q 043288           49 TRMDWKETP-EAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVR  127 (156)
Q Consensus        49 p~~di~e~~-~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~  127 (156)
                      |++||++++ ++|+|.++|||+++++|+|.+++ +.|+|+|++..... .+.+|+++|+.+|+|.|+|.||.++|..  +
T Consensus         1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~-~~L~I~g~~~~~~~-~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~   76 (90)
T cd06470           1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVEN-NQLTVTGKKADEEN-EEREYLHRGIAKRAFERSFNLADHVKVK--G   76 (90)
T ss_pred             CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccccc-CCCcEEEEEEeceEEEEEEECCCCceEC--e
Confidence            679999975 89999999999999999999997 59999999987655 6678999999999999999999999975  9


Q ss_pred             EEEeCCEEEEEEec
Q 043288          128 ASIEDGVLTVTVPK  141 (156)
Q Consensus       128 A~~~nGvL~I~lPK  141 (156)
                      |+|+||+|+|+||+
T Consensus        77 A~~~~GvL~I~l~~   90 (90)
T cd06470          77 AELENGLLTIDLER   90 (90)
T ss_pred             eEEeCCEEEEEEEC
Confidence            99999999999985

IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6

>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa)

Probab=99.91  E-value=2.1e-23  Score=139.34  Aligned_cols=82  Identities=24%  Similarity=0.475  Sum_probs=73.5

Q ss_pred             EEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEE-
Q 043288           52 DWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASI-  130 (156)
Q Consensus        52 di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~-  130 (156)
                      +|.+++++|.|.++|||+++++|+|++.+ +.|+|+|++....  ++..|+++|     |.|+|.||++||.++|+|+| 
T Consensus         4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~~~e-----f~R~~~LP~~Vd~~~i~A~~~   75 (86)
T cd06497           4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLD-DYVEIHGKHSERQ--DDHGYISRE-----FHRRYRLPSNVDQSAITCSLS   75 (86)
T ss_pred             eEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccee--CCCCEEEEE-----EEEEEECCCCCChHHeEEEeC
Confidence            79999999999999999999999999998 5999999875433  344666665     99999999999999999999 


Q ss_pred             eCCEEEEEEec
Q 043288          131 EDGVLTVTVPK  141 (156)
Q Consensus       131 ~nGvL~I~lPK  141 (156)
                      +||+|+|++||
T Consensus        76 ~dGvL~I~~PK   86 (86)
T cd06497          76 ADGMLTFSGPK   86 (86)
T ss_pred             CCCEEEEEecC
Confidence            89999999998

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.

>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20

Probab=99.89  E-value=9.2e-23  Score=135.39  Aligned_cols=82  Identities=21%  Similarity=0.435  Sum_probs=72.1

Q ss_pred             EEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEE-
Q 043288           52 DWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASI-  130 (156)
Q Consensus        52 di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~-  130 (156)
                      +|.+++++|.|.++||||++++|+|++.+ +.|+|+|++..+.  +...|+++|     |.|+|.||.+||.++|+|+| 
T Consensus         1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~--~~~~~~~~e-----f~R~~~LP~~vd~~~i~A~~~   72 (83)
T cd06478           1 EVRLDKDRFSVNLDVKHFSPEELSVKVLG-DFVEIHGKHEERQ--DEHGFISRE-----FHRRYRLPPGVDPAAITSSLS   72 (83)
T ss_pred             CeeecCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEceEc--CCCCEEEEE-----EEEEEECCCCcChHHeEEEEC
Confidence            47889999999999999999999999997 5999999875433  234566654     99999999999999999999 


Q ss_pred             eCCEEEEEEec
Q 043288          131 EDGVLTVTVPK  141 (156)
Q Consensus       131 ~nGvL~I~lPK  141 (156)
                      +||+|+|++||
T Consensus        73 ~dGvL~I~~PK   83 (83)
T cd06478          73 ADGVLTISGPR   83 (83)
T ss_pred             CCCEEEEEecC
Confidence            69999999998

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol

>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa)

Probab=99.89  E-value=9.7e-23  Score=135.54  Aligned_cols=82  Identities=20%  Similarity=0.420  Sum_probs=71.8

Q ss_pred             EEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEe-
Q 043288           53 WKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIE-  131 (156)
Q Consensus        53 i~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~-  131 (156)
                      +++++++|.|.++|||+++++|+|++.+ +.|+|+|++..+.  ++..|+++     .|.|+|.||.+||.++|+|+|+ 
T Consensus         2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~~~-----eF~R~~~LP~~vd~~~i~A~~~~   73 (84)
T cd06498           2 MRLEKDKFSVNLDVKHFSPEELKVKVLG-DFIEIHGKHEERQ--DEHGFISR-----EFQRKYRIPADVDPLTITSSLSP   73 (84)
T ss_pred             eEeCCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccee--CCCCEEEE-----EEEEEEECCCCCChHHcEEEeCC
Confidence            6788999999999999999999999997 5999999875443  33456554     4999999999999999999995 


Q ss_pred             CCEEEEEEecc
Q 043288          132 DGVLTVTVPKE  142 (156)
Q Consensus       132 nGvL~I~lPK~  142 (156)
                      ||+|+|++||+
T Consensus        74 dGvL~I~lPk~   84 (84)
T cd06498          74 DGVLTVCGPRK   84 (84)
T ss_pred             CCEEEEEEeCC
Confidence            99999999985

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ

>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins

Probab=99.89  E-value=8.4e-23  Score=134.83  Aligned_cols=79  Identities=23%  Similarity=0.413  Sum_probs=71.4

Q ss_pred             EEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEE-
Q 043288           52 DWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASI-  130 (156)
Q Consensus        52 di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~-  130 (156)
                      ||.|++++|.|.++|||++++||+|++.+ +.|+|+|+++.+.          +..+|+|+|+|.||.+||+++|+|+| 
T Consensus         2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~-~~L~I~ger~~~~----------~~~~g~F~R~~~LP~~vd~e~v~A~l~   70 (81)
T cd06479           2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSN-NQIEVHAEKLASD----------GTVMNTFTHKCQLPEDVDPTSVSSSLG   70 (81)
T ss_pred             CccCcCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEeccC----------CCEEEEEEEEEECCCCcCHHHeEEEec
Confidence            68999999999999999999999999997 5999999985432          12478999999999999999999998 


Q ss_pred             eCCEEEEEEec
Q 043288          131 EDGVLTVTVPK  141 (156)
Q Consensus       131 ~nGvL~I~lPK  141 (156)
                      +||+|+|++++
T Consensus        71 ~~GvL~I~~~~   81 (81)
T cd06479          71 EDGTLTIKARR   81 (81)
T ss_pred             CCCEEEEEecC
Confidence            99999999985

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.

>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins

Probab=99.87  E-value=9.6e-22  Score=131.31  Aligned_cols=82  Identities=23%  Similarity=0.451  Sum_probs=71.7

Q ss_pred             eEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEE
Q 043288           51 MDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASI  130 (156)
Q Consensus        51 ~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~  130 (156)
                      .+|+|++++|.|.++|||+++++|+|++.+ +.|+|+|++..+..  ...+.     .++|+|+|.||..||.++|+|.|
T Consensus         3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~~~~--~~~~~-----~~~f~R~f~LP~~vd~~~v~A~~   74 (86)
T cd06475           3 SEIRQTADRWKVSLDVNHFAPEELVVKTKD-GVVEITGKHEEKQD--EHGFV-----SRCFTRKYTLPPGVDPTAVTSSL   74 (86)
T ss_pred             ceEEEcCCeEEEEEECCCCCHHHEEEEEEC-CEEEEEEEECcCcC--CCCEE-----EEEEEEEEECCCCCCHHHcEEEE
Confidence            589999999999999999999999999997 59999999864332  22332     34799999999999999999999


Q ss_pred             e-CCEEEEEEe
Q 043288          131 E-DGVLTVTVP  140 (156)
Q Consensus       131 ~-nGvL~I~lP  140 (156)
                      + ||+|+|++|
T Consensus        75 ~~dGvL~I~lP   85 (86)
T cd06475          75 SPDGILTVEAP   85 (86)
T ss_pred             CCCCeEEEEec
Confidence            6 999999998

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat

>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins

Probab=99.87  E-value=1.4e-21  Score=129.70  Aligned_cols=81  Identities=21%  Similarity=0.359  Sum_probs=69.4

Q ss_pred             EEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEe-
Q 043288           53 WKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIE-  131 (156)
Q Consensus        53 i~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~-  131 (156)
                      +..++++|.|.++|||+++++|+|++.+ +.|+|+|++....  +...++++     .|.|+|.||.+||.++|+|+|. 
T Consensus         2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~~~-----eF~R~~~LP~~vd~~~v~A~~~~   73 (83)
T cd06476           2 VESEDDKYQVFLDVCHFTPDEITVRTVD-NLLEVSARHPQRM--DRHGFVSR-----EFTRTYILPMDVDPLLVRASLSH   73 (83)
T ss_pred             eeccCCeEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEccee--cCCCEEEE-----EEEEEEECCCCCChhhEEEEecC
Confidence            4457899999999999999999999998 5999999985432  23335544     4999999999999999999995 


Q ss_pred             CCEEEEEEec
Q 043288          132 DGVLTVTVPK  141 (156)
Q Consensus       132 nGvL~I~lPK  141 (156)
                      ||+|+|++||
T Consensus        74 dGvL~I~~Pr   83 (83)
T cd06476          74 DGILCIQAPR   83 (83)
T ss_pred             CCEEEEEecC
Confidence            9999999997

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.

>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins

Probab=99.87  E-value=1.1e-21  Score=131.33  Aligned_cols=83  Identities=27%  Similarity=0.523  Sum_probs=72.4

Q ss_pred             ECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEE-eCC
Q 043288           55 ETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASI-EDG  133 (156)
Q Consensus        55 e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~-~nG  133 (156)
                      +..++|.|.++|||++++||+|++.+ +.|+|+|++..+.......|.   +.+|.|.|+|.||.+||.++|+|.| +||
T Consensus         4 ~~~d~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~~~~~~~~~---~~~~~F~R~~~LP~~Vd~~~i~A~~~~dG   79 (87)
T cd06481           4 DGKEGFSLKLDVRGFSPEDLSVRVDG-RKLVVTGKREKKNEDEKGSFS---YEYQEFVREAQLPEHVDPEAVTCSLSPSG   79 (87)
T ss_pred             CccceEEEEEECCCCChHHeEEEEEC-CEEEEEEEEeeecccCCCcEE---EEeeEEEEEEECCCCcChHHeEEEeCCCc
Confidence            45679999999999999999999997 599999998765544444554   3478999999999999999999999 999


Q ss_pred             EEEEEEec
Q 043288          134 VLTVTVPK  141 (156)
Q Consensus       134 vL~I~lPK  141 (156)
                      +|+|++|+
T Consensus        80 vL~I~~P~   87 (87)
T cd06481          80 HLHIRAPR   87 (87)
T ss_pred             eEEEEcCC
Confidence            99999995

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.

>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=99.87  E-value=3.3e-21  Score=127.70  Aligned_cols=88  Identities=51%  Similarity=0.824  Sum_probs=80.7

Q ss_pred             EEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEe
Q 043288           52 DWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIE  131 (156)
Q Consensus        52 di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~  131 (156)
                      ++.+++++|+|.++|||+++++|+|++.+ +.|.|+|++........ .+...++..+.|.|++.||..+|.+.++|.|+
T Consensus         1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~-~~l~I~g~~~~~~~~~~-~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~   78 (88)
T cd06464           1 DVYETDDAYVVEADLPGFKKEDIKVEVED-GVLTISGEREEEEEEEE-NYLRRERSYGSFSRSFRLPEDVDPDKIKASLE   78 (88)
T ss_pred             CcEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCC-cEEEEEEeCcEEEEEEECCCCcCHHHcEEEEe
Confidence            47889999999999999999999999998 59999999987654433 78888999999999999999999999999999


Q ss_pred             CCEEEEEEec
Q 043288          132 DGVLTVTVPK  141 (156)
Q Consensus       132 nGvL~I~lPK  141 (156)
                      ||+|+|++||
T Consensus        79 ~G~L~I~~pk   88 (88)
T cd06464          79 NGVLTITLPK   88 (88)
T ss_pred             CCEEEEEEcC
Confidence            9999999997

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins

Probab=99.86  E-value=3.8e-21  Score=128.44  Aligned_cols=80  Identities=23%  Similarity=0.328  Sum_probs=70.2

Q ss_pred             CCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEeCC-E
Q 043288           56 TPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG-V  134 (156)
Q Consensus        56 ~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~nG-v  134 (156)
                      +++.|+|.++|||+++++|+|++.+ +.|+|+|++..+.+...    ..||.+|+|.|+|.||.+||.++|+|+|+|| +
T Consensus         6 ~~~~~~v~adlPG~~kedI~V~v~~-~~L~I~ger~~~~e~~~----~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~   80 (87)
T cd06482           6 DSSNVLASVDVCGFEPDQVKVKVKD-GKVQVSAERENRYDCLG----SKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSV   80 (87)
T ss_pred             cCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCC----ccEEEEEEEEEEEECCCCcChHHcEEEEcCCCE
Confidence            6789999999999999999999998 49999999876543222    2478999999999999999999999999766 9


Q ss_pred             EEEEEe
Q 043288          135 LTVTVP  140 (156)
Q Consensus       135 L~I~lP  140 (156)
                      |+|.-|
T Consensus        81 l~i~~~   86 (87)
T cd06482          81 VKIETP   86 (87)
T ss_pred             EEEeeC
Confidence            999887

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.

>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins

Probab=99.85  E-value=1.8e-20  Score=124.24  Aligned_cols=79  Identities=20%  Similarity=0.379  Sum_probs=68.0

Q ss_pred             EECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEE-eC
Q 043288           54 KETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASI-ED  132 (156)
Q Consensus        54 ~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~-~n  132 (156)
                      -+++++|.|+++|||+++++|+|++.+ +.|+|+|++..+..  ...+.     .++|+|+|.||.+|+.++|+|+| +|
T Consensus         3 ~e~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~ge~~~~~~--~~~~~-----~r~F~R~~~LP~~Vd~~~v~A~~~~d   74 (83)
T cd06477           3 EEGKPMFQILLDVVQFRPEDIIIQVFE-GWLLIKGQHGVRMD--EHGFI-----SRSFTRQYQLPDGVEHKDLSAMLCHD   74 (83)
T ss_pred             ccCCceEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEccccC--CCCEE-----EEEEEEEEECCCCcchheEEEEEcCC
Confidence            367899999999999999999999998 59999999876442  23332     23799999999999999999998 89


Q ss_pred             CEEEEEEe
Q 043288          133 GVLTVTVP  140 (156)
Q Consensus       133 GvL~I~lP  140 (156)
                      |+|+|+.|
T Consensus        75 GvL~I~~~   82 (83)
T cd06477          75 GILVVETK   82 (83)
T ss_pred             CEEEEEec
Confidence            99999986

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).

>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=99.84  E-value=1e-20  Score=125.40  Aligned_cols=77  Identities=29%  Similarity=0.530  Sum_probs=67.7

Q ss_pred             CCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEeC-CEE
Q 043288           57 PEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIED-GVL  135 (156)
Q Consensus        57 ~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~n-GvL  135 (156)
                      +++|.|.++||||++++|+|++++ +.|+|+|++.....  ..     ++..+.|.|+|.||.+||.++++|+|.| |+|
T Consensus         6 ~~~~~v~~dlpG~~~edI~v~v~~-~~L~I~g~~~~~~~--~~-----~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL   77 (83)
T cd06526           6 DEKFQVTLDVKGFKPEELKVKVSD-NKLVVEGKHEERED--EH-----GYVSREFTRRYQLPEGVDPDSVTSSLSSDGVL   77 (83)
T ss_pred             CeeEEEEEECCCCCHHHcEEEEEC-CEEEEEEEEeeecc--CC-----CEEEEEEEEEEECCCCCChHHeEEEeCCCcEE
Confidence            369999999999999999999997 59999999876542  12     2346789999999999999999999998 999


Q ss_pred             EEEEec
Q 043288          136 TVTVPK  141 (156)
Q Consensus       136 ~I~lPK  141 (156)
                      +|++||
T Consensus        78 ~I~~Pk   83 (83)
T cd06526          78 TIEAPK   83 (83)
T ss_pred             EEEecC
Confidence            999997

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=2.1e-19  Score=136.83  Aligned_cols=114  Identities=54%  Similarity=0.899  Sum_probs=101.5

Q ss_pred             CcccccceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccC--CCccEEEEeeeceEEEEEEECCCC
Q 043288           43 TSAIVNTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVERED--KNETWHRVERSRGKFLRRFRLPEN  120 (156)
Q Consensus        43 ~~~~~~p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~--~~~~~~~~e~~~~~f~r~i~lP~~  120 (156)
                      ..+...++++|.++.+.|.+.+++||+.+++++|.++++++|+|+|++..+.+.  ....|+..|+..|.|.|.+.||+.
T Consensus        79 ~~~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPen  158 (196)
T KOG0710|consen   79 AKSEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPEN  158 (196)
T ss_pred             ccccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCcc
Confidence            344445778899999999999999999999999999986689999998876554  567889999999999999999999


Q ss_pred             CccCceEEEEeCCEEEEEEeccCC--CCCCeeEEecCC
Q 043288          121 GKIDQVRASIEDGVLTVTVPKEEV--KKPELKAIEISG  156 (156)
Q Consensus       121 vd~~~i~A~~~nGvL~I~lPK~~~--~~~~~~~I~I~~  156 (156)
                      ++.+.|+|.|+||+|+|++||..+  +....+.|.|.+
T Consensus       159 v~~d~ikA~~~nGVL~VvvpK~~~~~~~~~v~~i~i~~  196 (196)
T KOG0710|consen  159 VDVDEIKAEMENGVLTVVVPKLEPLLKKPKVRQIAISG  196 (196)
T ss_pred             ccHHHHHHHhhCCeEEEEEecccccccCCccceeeccC
Confidence            999999999999999999999988  678888888864

>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21

Probab=99.75  E-value=1.3e-17  Score=112.22  Aligned_cols=81  Identities=16%  Similarity=0.335  Sum_probs=69.8

Q ss_pred             EEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEe-
Q 043288           53 WKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIE-  131 (156)
Q Consensus        53 i~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~-  131 (156)
                      +..++++|.|.+++.||+++||+|++.+ +.|+|+|++..+..+  ..+.     .+.|.|+|.||.+||.+.|+|.+. 
T Consensus        10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~~-~~L~V~Gkh~~~~~e--~g~~-----~r~F~R~~~LP~~Vd~~~v~s~l~~   81 (91)
T cd06480          10 PPNSSEPWKVCVNVHSFKPEELTVKTKD-GFVEVSGKHEEQQKE--GGIV-----SKNFTKKIQLPPEVDPVTVFASLSP   81 (91)
T ss_pred             CCCCCCcEEEEEEeCCCCHHHcEEEEEC-CEEEEEEEECcccCC--CCEE-----EEEEEEEEECCCCCCchhEEEEeCC
Confidence            4557889999999999999999999997 599999998865432  2333     367999999999999999999996 


Q ss_pred             CCEEEEEEec
Q 043288          132 DGVLTVTVPK  141 (156)
Q Consensus       132 nGvL~I~lPK  141 (156)
                      ||+|+|.+|.
T Consensus        82 dGvL~IeaP~   91 (91)
T cd06480          82 EGLLIIEAPQ   91 (91)
T ss_pred             CCeEEEEcCC
Confidence            9999999983

6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.

>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=5.5e-17  Score=121.04  Aligned_cols=99  Identities=21%  Similarity=0.423  Sum_probs=85.3

Q ss_pred             ceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEE
Q 043288           49 TRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRA  128 (156)
Q Consensus        49 p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A  128 (156)
                      ...++..++++|.|.+|+..|++++|+|++.+ +.|.|+|++.+..  ++..+..     +.|.|++.||.+||++.|++
T Consensus        63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~-~~l~V~gkHeer~--d~~G~v~-----R~F~R~y~LP~~vdp~~V~S  134 (173)
T KOG3591|consen   63 GASEIVNDKDKFEVNLDVHQFKPEELKVKTDD-NTLEVEGKHEEKE--DEHGYVS-----RSFVRKYLLPEDVDPTSVTS  134 (173)
T ss_pred             cccccccCCCcEEEEEEcccCcccceEEEeCC-CEEEEEeeecccc--CCCCeEE-----EEEEEEecCCCCCChhheEE
Confidence            45788899999999999999999999999997 5999999987654  3344443     35999999999999999999


Q ss_pred             EE-eCCEEEEEEeccCCCCCCeeEEecC
Q 043288          129 SI-EDGVLTVTVPKEEVKKPELKAIEIS  155 (156)
Q Consensus       129 ~~-~nGvL~I~lPK~~~~~~~~~~I~I~  155 (156)
                      .+ .||+|+|++||........+.|+|+
T Consensus       135 ~LS~dGvLtI~ap~~~~~~~~er~ipI~  162 (173)
T KOG3591|consen  135 TLSSDGVLTIEAPKPPPKQDNERSIPIE  162 (173)
T ss_pred             eeCCCceEEEEccCCCCcCccceEEeEe
Confidence            99 8999999999998765566888885

>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

Probab=99.59  E-value=2e-14  Score=91.96  Aligned_cols=80  Identities=50%  Similarity=0.841  Sum_probs=70.7

Q ss_pred             EEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEeC
Q 043288           53 WKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIED  132 (156)
Q Consensus        53 i~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~n  132 (156)
                      ++++++.|.|.+++||+.+++++|.+++ +.|.|+|.......        .+...+.|.+.+.||..++++.++|.+.+
T Consensus         1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~-~~l~v~~~~~~~~~--------~~~~~~~~~~~~~L~~~i~~~~~~~~~~~   71 (80)
T cd00298           1 WYQTDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEEEE--------RERSYGEFERSFELPEDVDPEKSKASLEN   71 (80)
T ss_pred             CEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcCCCc--------ceEeeeeEEEEEECCCCcCHHHCEEEEEC
Confidence            4678899999999999999999999997 59999998765432        33446789999999999999999999999


Q ss_pred             CEEEEEEec
Q 043288          133 GVLTVTVPK  141 (156)
Q Consensus       133 GvL~I~lPK  141 (156)
                      |+|+|.+||
T Consensus        72 ~~l~i~l~K   80 (80)
T cd00298          72 GVLEITLPK   80 (80)
T ss_pred             CEEEEEEcC
Confidence            999999997

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind

>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1

Probab=99.36  E-value=7.4e-12  Score=81.36  Aligned_cols=71  Identities=27%  Similarity=0.377  Sum_probs=64.1

Q ss_pred             EEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEeC
Q 043288           53 WKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIED  132 (156)
Q Consensus        53 i~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~n  132 (156)
                      ++++++.+.|.+.+||+++++++|.+++ +.|.|++.                    .|.+.+.||..||+++++|++.+
T Consensus         1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~-~~l~i~~~--------------------~~~~~~~l~~~I~~e~~~~~~~~   59 (78)
T cd06469           1 WSQTDEDVKISVPLKGVKTSKVDIFCSD-LYLKVNFP--------------------PYLFELDLAAPIDDEKSSAKIGN   59 (78)
T ss_pred             CcccCCEEEEEEEeCCCccccceEEEec-CEEEEcCC--------------------CEEEEEeCcccccccccEEEEeC
Confidence            4688999999999999999999999997 58998861                    27899999999999999999999


Q ss_pred             CEEEEEEeccCC
Q 043288          133 GVLTVTVPKEEV  144 (156)
Q Consensus       133 GvL~I~lPK~~~  144 (156)
                      |.|.|+|+|..+
T Consensus        60 ~~l~i~L~K~~~   71 (78)
T cd06469          60 GVLVFTLVKKEP   71 (78)
T ss_pred             CEEEEEEEeCCC
Confidence            999999999864

The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.

>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

Probab=99.06  E-value=2.3e-09  Score=69.61  Aligned_cols=76  Identities=22%  Similarity=0.336  Sum_probs=66.2

Q ss_pred             EEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEeC
Q 043288           53 WKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIED  132 (156)
Q Consensus        53 i~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~n  132 (156)
                      ++++++.+.|.+.+||..+++++|.+.+ +.|.|++....               .+.|...+.|+..|+++..++++.+
T Consensus         1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~-~~l~i~~~~~~---------------~~~~~~~~~L~~~I~~~~s~~~~~~   64 (84)
T cd06463           1 WYQTLDEVTITIPLKDVTKKDVKVEFTP-KSLTVSVKGGG---------------GKEYLLEGELFGPIDPEESKWTVED   64 (84)
T ss_pred             CcccccEEEEEEEcCCCCccceEEEEec-CEEEEEeeCCC---------------CCceEEeeEccCccchhhcEEEEeC
Confidence            3578899999999999999999999997 58999987431               1247788999999999999999999


Q ss_pred             CEEEEEEeccCC
Q 043288          133 GVLTVTVPKEEV  144 (156)
Q Consensus       133 GvL~I~lPK~~~  144 (156)
                      |.|.|+|+|+.+
T Consensus        65 ~~l~i~L~K~~~   76 (84)
T cd06463          65 RKIEITLKKKEP   76 (84)
T ss_pred             CEEEEEEEECCC
Confidence            999999999875

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of

>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis []

Probab=99.05  E-value=2.5e-09  Score=79.48  Aligned_cols=78  Identities=26%  Similarity=0.528  Sum_probs=62.2

Q ss_pred             cceeEEEECCC-eEEEEEEcCCCCCCC-eEEEEeCC-cEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccC
Q 043288           48 NTRMDWKETPE-AHVFKVDLPGLTKED-VKLEIEDH-RVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKID  124 (156)
Q Consensus        48 ~p~~di~e~~~-~~~i~~~lPG~~~ed-i~v~v~~g-~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~  124 (156)
                      .+.+++.+.++ .+.|.++|||+++++ |+|.++.+ ..|+|+..                   +.+.+++.||.. +.+
T Consensus        91 ~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~-------------------~~~~krv~L~~~-~~e  150 (177)
T PF05455_consen   91 SIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVG-------------------EKYLKRVALPWP-DPE  150 (177)
T ss_pred             eeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecC-------------------CceEeeEecCCC-ccc
Confidence            47789998777 699999999999888 99999843 35555421                   125688999966 678


Q ss_pred             ceEEEEeCCEEEEEEeccCCC
Q 043288          125 QVRASIEDGVLTVTVPKEEVK  145 (156)
Q Consensus       125 ~i~A~~~nGvL~I~lPK~~~~  145 (156)
                      .++|.|+||||+|+|-+....
T Consensus       151 ~~~~t~nNgILEIri~~~~~~  171 (177)
T PF05455_consen  151 ITSATFNNGILEIRIRRTEES  171 (177)
T ss_pred             eeeEEEeCceEEEEEeecCCC
Confidence            899999999999999887643

>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)

Probab=98.81  E-value=3.2e-08  Score=64.84  Aligned_cols=77  Identities=21%  Similarity=0.280  Sum_probs=66.6

Q ss_pred             EEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEe
Q 043288           52 DWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIE  131 (156)
Q Consensus        52 di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~  131 (156)
                      |++++++.+.|.+.+||+.++++.|.+.+ +.|.|++...     .          .+.|...+.|+..|+++..++.+.
T Consensus         1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~-~~l~i~~~~~-----~----------~~~~~~~~~L~~~I~~~~s~~~~~   64 (84)
T cd06466           1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNE-QSLSVSIILP-----G----------GSEYQLELDLFGPIDPEQSKVSVL   64 (84)
T ss_pred             CccccCCEEEEEEEECCCCHHHCEEEEec-CEEEEEEECC-----C----------CCeEEEecccccccCchhcEEEEe
Confidence            57899999999999999999999999997 6899986632     0          124777889999999999999999


Q ss_pred             CCEEEEEEeccCC
Q 043288          132 DGVLTVTVPKEEV  144 (156)
Q Consensus       132 nGvL~I~lPK~~~  144 (156)
                      +|.|.|+|.|..+
T Consensus        65 ~~~vei~L~K~~~   77 (84)
T cd06466          65 PTKVEITLKKAEP   77 (84)
T ss_pred             CeEEEEEEEcCCC
Confidence            9999999999864

Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug

>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown

Probab=98.60  E-value=2e-06  Score=55.13  Aligned_cols=77  Identities=22%  Similarity=0.354  Sum_probs=63.7

Q ss_pred             ceeEEEECCCeEEEEEEcCCC--CCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCce
Q 043288           49 TRMDWKETPEAHVFKVDLPGL--TKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQV  126 (156)
Q Consensus        49 p~~di~e~~~~~~i~~~lPG~--~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i  126 (156)
                      |+++++++++.+.|.+.+++.  .++++.|.+.+ +.|.|+......               ..|...+.|...|+++..
T Consensus         1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~-~~l~v~~~~~~~---------------~~~~~~~~L~~~I~~~~s   64 (79)
T PF04969_consen    1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTD-TSLSVSIKSGDG---------------KEYLLEGELFGEIDPDES   64 (79)
T ss_dssp             SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEET-TEEEEEEEETTS---------------CEEEEEEEBSS-BECCCE
T ss_pred             CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEe-eEEEEEEEccCC---------------ceEEEEEEEeeeEcchhc
Confidence            578999999999999999665  59999999998 589999664322               137778889999999999


Q ss_pred             EEEEeCCEEEEEEec
Q 043288          127 RASIEDGVLTVTVPK  141 (156)
Q Consensus       127 ~A~~~nGvL~I~lPK  141 (156)
                      +..+.++.|.|+|.|
T Consensus        65 ~~~~~~~~i~i~L~K   79 (79)
T PF04969_consen   65 TWKVKDNKIEITLKK   79 (79)
T ss_dssp             EEEEETTEEEEEEEB
T ss_pred             EEEEECCEEEEEEEC
Confidence            999999999999987

The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....

>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins

Probab=98.31  E-value=1.5e-05  Score=54.98  Aligned_cols=78  Identities=14%  Similarity=0.269  Sum_probs=65.9

Q ss_pred             ceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEE
Q 043288           49 TRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRA  128 (156)
Q Consensus        49 p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A  128 (156)
                      |+++++++.+.+.|.+.+|++  +++.|.+.. +.|.|++....    .          ...|.-.+.|...|+++..+.
T Consensus         1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~-~~l~v~~~~~~----~----------~~~y~~~~~L~~~I~pe~s~~   63 (108)
T cd06465           1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEP-TSLSFKAKGGG----G----------GKKYEFDLEFYKEIDPEESKY   63 (108)
T ss_pred             CceeeeECCCEEEEEEEeCCC--CCcEEEEEC-CEEEEEEEcCC----C----------CeeEEEEeEhhhhccccccEE
Confidence            578999999999999999998  889999997 58999975321    1          113667789999999999999


Q ss_pred             EEeCCEEEEEEeccC
Q 043288          129 SIEDGVLTVTVPKEE  143 (156)
Q Consensus       129 ~~~nGvL~I~lPK~~  143 (156)
                      ++.++.|.|+|.|..
T Consensus        64 ~v~~~kveI~L~K~~   78 (108)
T cd06465          64 KVTGRQIEFVLRKKE   78 (108)
T ss_pred             EecCCeEEEEEEECC
Confidence            999999999999987

hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.

>PF08190 PIH1: pre-RNA processing PIH1/Nop17

Probab=98.19  E-value=1.1e-05  Score=65.48  Aligned_cols=65  Identities=29%  Similarity=0.554  Sum_probs=56.2

Q ss_pred             CCeEEEEEEcCCC-CCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEE--eCC
Q 043288           57 PEAHVFKVDLPGL-TKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASI--EDG  133 (156)
Q Consensus        57 ~~~~~i~~~lPG~-~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~--~nG  133 (156)
                      .+.++|++.|||+ +..+|+|.|.+ +.|.|.....                  .|.-.+.||..||.+..+|+|  +.+
T Consensus       260 p~~lvv~i~LP~~~s~~~i~LdV~~-~~l~l~~~~~------------------~y~L~l~LP~~V~~~~~~Akf~~~~~  320 (328)
T PF08190_consen  260 PEELVVEIELPGVESASDIDLDVSE-DRLSLSSPKP------------------KYRLDLPLPYPVDEDNGKAKFDKKTK  320 (328)
T ss_pred             CceEEEEEECCCcCccceeEEEEeC-CEEEEEeCCC------------------ceEEEccCCCcccCCCceEEEccCCC
Confidence            4789999999999 77999999998 5888884431                  266779999999999999999  568


Q ss_pred             EEEEEEe
Q 043288          134 VLTVTVP  140 (156)
Q Consensus       134 vL~I~lP  140 (156)
                      +|+|+||
T Consensus       321 ~L~vtlp  327 (328)
T PF08190_consen  321 TLTVTLP  327 (328)
T ss_pred             EEEEEEE
Confidence            9999998

>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins

Probab=98.16  E-value=2.6e-05  Score=51.25  Aligned_cols=77  Identities=22%  Similarity=0.297  Sum_probs=63.9

Q ss_pred             EEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEe
Q 043288           52 DWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIE  131 (156)
Q Consensus        52 di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~  131 (156)
                      |++++++...|.+.++|+.++++.|.+.+ +.|.+++....     +          ..|.-.+.|...|++++.+....
T Consensus         1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~-~~l~~~~~~~~-----~----------~~y~~~~~L~~~I~p~~s~~~v~   64 (84)
T cd06489           1 DWYQTESQVVITILIKNVKPEDVSVEFEK-RELSATVKLPS-----G----------NDYSLKLHLLHPIVPEQSSYKIL   64 (84)
T ss_pred             CccccCCEEEEEEEECCCCHHHCEEEEeC-CEEEEEEECCC-----C----------CcEEEeeecCceecchhcEEEEe
Confidence            57889999999999999999999999998 58999876411     1          12556678999999998888888


Q ss_pred             CCEEEEEEeccCC
Q 043288          132 DGVLTVTVPKEEV  144 (156)
Q Consensus       132 nGvL~I~lPK~~~  144 (156)
                      .+-+.|.|.|...
T Consensus        65 ~~kiei~L~K~~~   77 (84)
T cd06489          65 STKIEIKLKKTEA   77 (84)
T ss_pred             CcEEEEEEEcCCC
Confidence            9999999999753

hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.

>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins

Probab=97.98  E-value=0.00015  Score=48.12  Aligned_cols=79  Identities=20%  Similarity=0.180  Sum_probs=66.0

Q ss_pred             eeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEE
Q 043288           50 RMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRAS  129 (156)
Q Consensus        50 ~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~  129 (156)
                      +.|++++++...|.+.+.|+.++++.+.+++ +.|.++..-..     +          ..|.-.+.|-..|+++..+.+
T Consensus         2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~-~~l~v~~~~~~-----~----------~~y~~~l~L~~~I~~~~s~~~   65 (87)
T cd06488           2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANS-TVLTIHIVFEG-----N----------KEFQLDIELWGVIDVEKSSVN   65 (87)
T ss_pred             CccEeeCCCEEEEEEEECcCCccceEEEecC-CEEEEEEECCC-----C----------ceEEEEeeccceEChhHcEEE
Confidence            4789999999999999999999999999987 58888754321     0          126677889999999998888


Q ss_pred             EeCCEEEEEEeccCC
Q 043288          130 IEDGVLTVTVPKEEV  144 (156)
Q Consensus       130 ~~nGvL~I~lPK~~~  144 (156)
                      ...+-+.|+|.|+++
T Consensus        66 v~~~kvei~L~K~~~   80 (87)
T cd06488          66 MLPTKVEIKLRKAEP   80 (87)
T ss_pred             ecCcEEEEEEEeCCC
Confidence            899999999999864

Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C

>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP)

Probab=97.91  E-value=0.00028  Score=46.89  Aligned_cols=79  Identities=11%  Similarity=0.318  Sum_probs=63.7

Q ss_pred             eeEEEECCCeEEEEEEcCCCCC---CCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEE-CCCCCccCc
Q 043288           50 RMDWKETPEAHVFKVDLPGLTK---EDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFR-LPENGKIDQ  125 (156)
Q Consensus        50 ~~di~e~~~~~~i~~~lPG~~~---edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~-lP~~vd~~~  125 (156)
                      ..+++++++...|.+.+|+..+   +++.|.+.. +.|.|++...     ++.          .|.-.+. |-..|+++.
T Consensus         3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~-~~l~v~~~~~-----~~~----------~~~~~~~~L~~~I~~e~   66 (92)
T cd06468           3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTE-RSFELKVHDL-----NGK----------NYRFTINRLLKKIDPEK   66 (92)
T ss_pred             eeeeecCCCEEEEEEEccCCCcCCcccEEEEecC-CEEEEEEECC-----CCc----------EEEEEehHhhCccCccc
Confidence            4789999999999999999876   999999997 5899987421     111          2444453 888999999


Q ss_pred             eEEEEeCCEEEEEEeccCC
Q 043288          126 VRASIEDGVLTVTVPKEEV  144 (156)
Q Consensus       126 i~A~~~nGvL~I~lPK~~~  144 (156)
                      .+.....+-+.|+|.|..+
T Consensus        67 s~~~~~~~ki~i~L~K~~~   85 (92)
T cd06468          67 SSFKVKTDRIVITLAKKKE   85 (92)
T ss_pred             cEEEEeCCEEEEEEEeCCC
Confidence            9999999999999999864

CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes

>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins

Probab=97.83  E-value=0.00028  Score=46.04  Aligned_cols=74  Identities=28%  Similarity=0.433  Sum_probs=60.0

Q ss_pred             EEEECCCeEEEEEEcC-CCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEE
Q 043288           52 DWKETPEAHVFKVDLP-GLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASI  130 (156)
Q Consensus        52 di~e~~~~~~i~~~lP-G~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~  130 (156)
                      .++++++...|.+.+| ++.++++.+.+.+ +.|.|+...       +.           +.-.-.|...|+++...-.+
T Consensus         2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~~-------~~-----------~~l~~~L~~~I~~~~s~w~~   62 (85)
T cd06467           2 SWTQTLDEVTVTIPLPEGTKSKDVKVEITP-KHLKVGVKG-------GE-----------PLLDGELYAKVKVDESTWTL   62 (85)
T ss_pred             EEEeeCCEEEEEEECCCCCcceeEEEEEEc-CEEEEEECC-------CC-----------ceEcCcccCceeEcCCEEEE
Confidence            5789999999999998 7899999999998 588888541       00           11223688899999888888


Q ss_pred             eC-CEEEEEEeccCC
Q 043288          131 ED-GVLTVTVPKEEV  144 (156)
Q Consensus       131 ~n-GvL~I~lPK~~~  144 (156)
                      .+ ..|.|+|+|+.+
T Consensus        63 ~~~~~v~i~L~K~~~   77 (85)
T cd06467          63 EDGKLLEITLEKRNE   77 (85)
T ss_pred             eCCCEEEEEEEECCC
Confidence            88 999999999865

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext

>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins

Probab=97.65  E-value=0.00095  Score=43.92  Aligned_cols=74  Identities=20%  Similarity=0.318  Sum_probs=58.0

Q ss_pred             EEEECCCeEEEEEEcC-CCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEE
Q 043288           52 DWKETPEAHVFKVDLP-GLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASI  130 (156)
Q Consensus        52 di~e~~~~~~i~~~lP-G~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~  130 (156)
                      +++++.+...|.+.+| |+.+++++|.+.. +.|.|....  .     .          .+ -.-.|...|+++...=.+
T Consensus         2 ~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~-~~l~v~~~~--~-----~----------~~-~~g~L~~~I~~d~Stw~i   62 (85)
T cd06493           2 YWQQTEEDLTLTIRLPEDTTKEDIRIKFLP-DHISIALKD--Q-----A----------PL-LEGKLYSSIDHESSTWII   62 (85)
T ss_pred             ccEEeCCEEEEEEECCCCCChhhEEEEEec-CEEEEEeCC--C-----C----------eE-EeCcccCcccccCcEEEE
Confidence            6789999999999996 9999999999997 588886420  0     0          01 223788899999877777


Q ss_pred             eCC-EEEEEEeccCC
Q 043288          131 EDG-VLTVTVPKEEV  144 (156)
Q Consensus       131 ~nG-vL~I~lPK~~~  144 (156)
                      .+| .|.|+|.|+.+
T Consensus        63 ~~~~~l~i~L~K~~~   77 (85)
T cd06493          63 KENKSLEVSLIKKDE   77 (85)
T ss_pred             eCCCEEEEEEEECCC
Confidence            666 79999999864

NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.

>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor

Probab=97.49  E-value=0.003  Score=43.57  Aligned_cols=78  Identities=14%  Similarity=0.218  Sum_probs=61.5

Q ss_pred             ceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEE
Q 043288           49 TRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRA  128 (156)
Q Consensus        49 p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A  128 (156)
                      |+++++++.+.+.|++.+|+  .++++|.+++ +.|+++|.-.     ++.          .|.-.+.|=..|++++.+.
T Consensus         2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~-~~l~f~~~~~-----~g~----------~y~~~l~l~~~I~pe~Sk~   63 (106)
T cd00237           2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEK-SKLTFSCLNG-----DNV----------KIYNEIELYDRVDPNDSKH   63 (106)
T ss_pred             CcceeeECCCEEEEEEEeCC--CCCcEEEEec-CEEEEEEECC-----CCc----------EEEEEEEeecccCcccCeE
Confidence            77999999999999999999  5799999997 5899998431     111          1445577878899997777


Q ss_pred             EEeCCEEEEEEeccCC
Q 043288          129 SIEDGVLTVTVPKEEV  144 (156)
Q Consensus       129 ~~~nGvL~I~lPK~~~  144 (156)
                      +...--+.|.|.|+..
T Consensus        64 ~v~~r~ve~~L~K~~~   79 (106)
T cd00237          64 KRTDRSILCCLRKGKE   79 (106)
T ss_pred             EeCCceEEEEEEeCCC
Confidence            7767788899999864

p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.

>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins

Probab=97.28  E-value=0.006  Score=41.07  Aligned_cols=77  Identities=19%  Similarity=0.351  Sum_probs=60.3

Q ss_pred             cceeEEEECCCeEEEEEEcC-CCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCce
Q 043288           48 NTRMDWKETPEAHVFKVDLP-GLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQV  126 (156)
Q Consensus        48 ~p~~di~e~~~~~~i~~~lP-G~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i  126 (156)
                      .+...++++.+...|.+.+| |+.++|+.|.+.. +.|.|...-        ..+     -.|      .|...|+++..
T Consensus         5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~-~~l~V~~~g--------~~~-----l~G------~L~~~I~~des   64 (93)
T cd06494           5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGS-RDISLAVKG--------QEV-----LKG------KLFDSVVADEC   64 (93)
T ss_pred             CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEc-CEEEEEECC--------EEE-----EcC------cccCccCcccC
Confidence            36789999999999999998 8999999999998 588887411        000     011      57888999987


Q ss_pred             EEEEeCCE-EEEEEeccCC
Q 043288          127 RASIEDGV-LTVTVPKEEV  144 (156)
Q Consensus       127 ~A~~~nGv-L~I~lPK~~~  144 (156)
                      .=.+++|- |.|+|.|...
T Consensus        65 tWtled~k~l~I~L~K~~~   83 (93)
T cd06494          65 TWTLEDRKLIRIVLTKSNR   83 (93)
T ss_pred             EEEEECCcEEEEEEEeCCC
Confidence            77787775 8999999863

Little is known about the function of the proteins in this subgroup.

>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]

Probab=97.08  E-value=0.0029  Score=47.41  Aligned_cols=80  Identities=21%  Similarity=0.303  Sum_probs=62.3

Q ss_pred             cceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceE
Q 043288           48 NTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVR  127 (156)
Q Consensus        48 ~p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~  127 (156)
                      .++.|++++.+..+|.+-.+++.+++++|.+.+ +.|.+..+-....               .|.-...|-..|.++..+
T Consensus         3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~-~~l~~~~~~~~g~---------------~~~l~~~L~~~I~pe~~s   66 (196)
T KOG1309|consen    3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISE-NTLSIVIQLPSGS---------------EYNLQLKLYHEIIPEKSS   66 (196)
T ss_pred             cccceeecCCceEEEEEEecCCCccceeEEeec-ceEEEEEecCCch---------------hhhhhHHhccccccccee
Confidence            467899999999999999999999999999997 6888876653221               144445576778888777


Q ss_pred             EEEeCCEEEEEEeccC
Q 043288          128 ASIEDGVLTVTVPKEE  143 (156)
Q Consensus       128 A~~~nGvL~I~lPK~~  143 (156)
                      -+.----+.|+|+|..
T Consensus        67 ~k~~stKVEI~L~K~~   82 (196)
T KOG1309|consen   67 FKVFSTKVEITLAKAE   82 (196)
T ss_pred             eEeeeeeEEEEecccc
Confidence            7777778889988854

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.06  E-value=0.0069  Score=50.04  Aligned_cols=81  Identities=19%  Similarity=0.276  Sum_probs=66.7

Q ss_pred             cceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceE
Q 043288           48 NTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVR  127 (156)
Q Consensus        48 ~p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~  127 (156)
                      .++.+++++++.+.|.|.+.|+.++++.|.+.+ +.|.|+......               ..|...+.|-..|+++..+
T Consensus       156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~-~~l~v~~~~~~~---------------~~y~~~~~L~~~I~p~~s~  219 (356)
T PLN03088        156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGE-QILSVVIEVPGE---------------DAYHLQPRLFGKIIPDKCK  219 (356)
T ss_pred             ccccceeecCCEEEEEEEecCCChHHcEEEeec-CEEEEEEecCCC---------------cceeecccccccccccccE
Confidence            477899999999999999999999999999997 588888643211               1255567888899999988


Q ss_pred             EEEeCCEEEEEEeccCC
Q 043288          128 ASIEDGVLTVTVPKEEV  144 (156)
Q Consensus       128 A~~~nGvL~I~lPK~~~  144 (156)
                      .+..-.-+.|+|.|...
T Consensus       220 ~~v~~~Kiei~l~K~~~  236 (356)
T PLN03088        220 YEVLSTKIEIRLAKAEP  236 (356)
T ss_pred             EEEecceEEEEEecCCC
Confidence            88888899999998864

>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins

Probab=96.45  E-value=0.089  Score=34.72  Aligned_cols=76  Identities=17%  Similarity=0.253  Sum_probs=53.7

Q ss_pred             eEEEECCCeEEEEEEcCCCCCCC--eEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEE
Q 043288           51 MDWKETPEAHVFKVDLPGLTKED--VKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRA  128 (156)
Q Consensus        51 ~di~e~~~~~~i~~~lPG~~~ed--i~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A  128 (156)
                      .|++++++...|.+...+....+  +.+.... +.|.|+-... ..               .|...+.|=..|+++. +.
T Consensus         1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~-~~l~v~~~~~-~~---------------~~~~~~~L~~~I~~~~-~~   62 (87)
T cd06490           1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQ-RELRVEIILG-DK---------------SYLLHLDLSNEVQWPC-EV   62 (87)
T ss_pred             CCceECCCEEEEEEEEcccCCCCccEEEECCC-CEEEEEEECC-Cc---------------eEEEeeeccccCCCCc-EE
Confidence            37899999999999998654444  4455454 4788875422 10               2667778888888775 55


Q ss_pred             EEe--CCEEEEEEeccCC
Q 043288          129 SIE--DGVLTVTVPKEEV  144 (156)
Q Consensus       129 ~~~--nGvL~I~lPK~~~  144 (156)
                      ++.  -|-+.|+|.|.++
T Consensus        63 ~~~~~~~KVEI~L~K~e~   80 (87)
T cd06490          63 RISTETGKIELVLKKKEP   80 (87)
T ss_pred             EEcccCceEEEEEEcCCC
Confidence            554  7899999999864

NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.

>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins

Probab=95.84  E-value=0.13  Score=33.96  Aligned_cols=74  Identities=26%  Similarity=0.330  Sum_probs=54.3

Q ss_pred             EEEECCCeEEEEEEcC-C--CCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEE
Q 043288           52 DWKETPEAHVFKVDLP-G--LTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRA  128 (156)
Q Consensus        52 di~e~~~~~~i~~~lP-G--~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A  128 (156)
                      .+.++.+...|.+.+| +  ..+.+++|.+.. +.|.|.-+..        ..         + -.=.|...|+++...=
T Consensus         2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~-~~l~v~~~g~--------~~---------~-i~G~L~~~V~~des~W   62 (87)
T cd06492           2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQR-KHLKVGLKGQ--------PP---------I-IDGELYNEVKVEESSW   62 (87)
T ss_pred             ccEeecCEEEEEEECCCCCCccceEEEEEEec-CEEEEEECCC--------ce---------E-EeCcccCcccccccEE
Confidence            3567888899999996 4  788999999997 5888863210        11         0 1125777889887776


Q ss_pred             EEeCC-EEEEEEeccCC
Q 043288          129 SIEDG-VLTVTVPKEEV  144 (156)
Q Consensus       129 ~~~nG-vL~I~lPK~~~  144 (156)
                      .+++| .|.|+|-|...
T Consensus        63 tled~~~l~i~L~K~~~   79 (87)
T cd06492          63 LIEDGKVVTVNLEKINK   79 (87)
T ss_pred             EEeCCCEEEEEEEECCC
Confidence            78886 89999999854

Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.

>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins

Probab=94.06  E-value=1.3  Score=30.30  Aligned_cols=80  Identities=11%  Similarity=0.251  Sum_probs=58.3

Q ss_pred             cceeEEEECCCeEEEEEEcC-CC-CCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCc
Q 043288           48 NTRMDWKETPEAHVFKVDLP-GL-TKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQ  125 (156)
Q Consensus        48 ~p~~di~e~~~~~~i~~~lP-G~-~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~  125 (156)
                      ...+.+.++.+...|++.+| |. +..+|.|.+.. +.|.|.-...     ++...+        +.-  .|+..|+++.
T Consensus         4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~-~~l~v~~~~~-----~~~~~~--------i~G--~L~~~V~~de   67 (102)
T cd06495           4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQS-SSIRVSVRDG-----GGEKVL--------MEG--EFTHKINTEN   67 (102)
T ss_pred             CCceEEEeECCeEEEEEECCCCCccceEEEEEEEc-CEEEEEEecC-----CCCceE--------EeC--cccCcccCcc
Confidence            35788999999999999999 64 57999999997 5888875310     000001        111  5778889887


Q ss_pred             eEEEEeCC-EEEEEEeccC
Q 043288          126 VRASIEDG-VLTVTVPKEE  143 (156)
Q Consensus       126 i~A~~~nG-vL~I~lPK~~  143 (156)
                      ..=.+++| .|.|+|-|..
T Consensus        68 s~Wtled~~~l~I~L~K~~   86 (102)
T cd06495          68 SLWSLEPGKCVLLSLSKCS   86 (102)
T ss_pred             ceEEEeCCCEEEEEEEECC
Confidence            77778886 5899999975

Little is known about the function of the proteins in this subgroup.

>PF14913 DPCD: DPCD protein family

Probab=93.41  E-value=0.82  Score=34.70  Aligned_cols=79  Identities=14%  Similarity=0.345  Sum_probs=59.8

Q ss_pred             ccccceeEEEECCCeEEEEE-EcCCCCCCCeEEEEeCC-cEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCC--
Q 043288           45 AIVNTRMDWKETPEAHVFKV-DLPGLTKEDVKLEIEDH-RVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPEN--  120 (156)
Q Consensus        45 ~~~~p~~di~e~~~~~~i~~-~lPG~~~edi~v~v~~g-~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~--  120 (156)
                      ++.+|-+-=..|...|.-+| +||. .++-.+|+++++ +.++|+...                  ..|.+.|.+|+-  
T Consensus        83 Ss~nP~~~r~dTk~~fqWRIRNLPY-P~dvYsVtvd~~~r~ivvRTtN------------------KKYyKk~~IPDl~R  143 (194)
T PF14913_consen   83 SSSNPIFVRRDTKTSFQWRIRNLPY-PKDVYSVTVDEDERCIVVRTTN------------------KKYYKKFSIPDLDR  143 (194)
T ss_pred             cCCCCEEEEEcCccceEEEEccCCC-CccceEEEEcCCCcEEEEECcC------------------ccceeEecCCcHHh
Confidence            44456666677888999999 7886 778889999854 578887331                  126688999952  


Q ss_pred             ----CccCceEEEEeCCEEEEEEecc
Q 043288          121 ----GKIDQVRASIEDGVLTVTVPKE  142 (156)
Q Consensus       121 ----vd~~~i~A~~~nGvL~I~lPK~  142 (156)
                          .+.+.++..+.|..|.|+..|-
T Consensus       144 ~~l~l~~~~ls~~h~nNTLIIsYkKP  169 (194)
T PF14913_consen  144 CGLPLEQSALSFAHQNNTLIISYKKP  169 (194)
T ss_pred             hCCCcchhhceeeeecCeEEEEecCc
Confidence                4677799999999999999774

>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]

Probab=87.99  E-value=2.5  Score=31.64  Aligned_cols=78  Identities=9%  Similarity=0.213  Sum_probs=57.4

Q ss_pred             cceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceE
Q 043288           48 NTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVR  127 (156)
Q Consensus        48 ~p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~  127 (156)
                      .|.+.+.+..+.+++++.++..  .+..|.++. ..|+++|+-..+.              ..+...|.|=..||+++.+
T Consensus         7 ~p~v~Waqr~~~vyltv~Ved~--~d~~v~~e~-~~l~fs~k~~~d~--------------~~~~~~ief~~eIdpe~sk   69 (180)
T KOG3158|consen    7 PPEVKWAQRRDLVYLTVCVEDA--KDVHVNLEP-SKLTFSCKSGADN--------------HKYENEIEFFDEIDPEKSK   69 (180)
T ss_pred             CCcchhhhhcCeEEEEEEeccC--ccceeeccc-cEEEEEeccCCCc--------------eeeEEeeehhhhcCHhhcc
Confidence            5778889999999999999864  455666665 5899998864221              1255678888899999877


Q ss_pred             EEEeCCEEEEEEeccC
Q 043288          128 ASIEDGVLTVTVPKEE  143 (156)
Q Consensus       128 A~~~nGvL~I~lPK~~  143 (156)
                      .+-. +.....++++.
T Consensus        70 ~k~~-~r~if~i~~K~   84 (180)
T KOG3158|consen   70 HKRT-SRSIFCILRKK   84 (180)
T ss_pred             cccc-ceEEEEEEEcc
Confidence            6666 66666666654

>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins

Probab=85.83  E-value=2.2  Score=28.20  Aligned_cols=34  Identities=24%  Similarity=0.349  Sum_probs=30.0

Q ss_pred             EEEEEEECCCCCccCceEEEEeCCEEEEEEeccCC
Q 043288          110 KFLRRFRLPENGKIDQVRASIEDGVLTVTVPKEEV  144 (156)
Q Consensus       110 ~f~r~i~lP~~vd~~~i~A~~~nGvL~I~lPK~~~  144 (156)
                      .|.-.+.|| +++.+.|+..+.+|.|+|+.-+...
T Consensus         9 ~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~~   42 (87)
T cd06482           9 NVLASVDVC-GFEPDQVKVKVKDGKVQVSAERENR   42 (87)
T ss_pred             EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecc
Confidence            477789999 8999999999999999999987653

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.

>PF13349 DUF4097: Domain of unknown function (DUF4097)

Probab=84.66  E-value=12  Score=26.67  Aligned_cols=83  Identities=16%  Similarity=0.215  Sum_probs=50.5

Q ss_pred             ceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEE
Q 043288           49 TRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRA  128 (156)
Q Consensus        49 p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A  128 (156)
                      ..+.|...++ ..+++..   ..+.++++.++ +.|.|+.+......  ...+..... ...-.-.+.||.....++++.
T Consensus        66 ~~V~I~~~~~-~~i~v~~---~~k~~~~~~~~-~~L~I~~~~~~~~~--~~~~~~~~~-~~~~~i~I~lP~~~~l~~i~i  137 (166)
T PF13349_consen   66 GDVEIKPSDD-DKIKVEY---NGKKPEISVEG-GTLTIKSKDRESFF--FKGFNFNNS-DNKSKITIYLPKDYKLDKIDI  137 (166)
T ss_pred             eeEEEEEcCC-ccEEEEE---cCcEEEEEEcC-CEEEEEEecccccc--cceEEEccc-CCCcEEEEEECCCCceeEEEE
Confidence            4466666443 3344444   21268888887 59999877221110  011111111 234557789999998889999


Q ss_pred             EEeCCEEEEEE
Q 043288          129 SIEDGVLTVTV  139 (156)
Q Consensus       129 ~~~nGvL~I~l  139 (156)
                      ...+|-++|.=
T Consensus       138 ~~~~G~i~i~~  148 (166)
T PF13349_consen  138 KTSSGDITIED  148 (166)
T ss_pred             EeccccEEEEc
Confidence            99999888753

>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins

Probab=82.33  E-value=7.7  Score=25.39  Aligned_cols=35  Identities=20%  Similarity=0.248  Sum_probs=30.5

Q ss_pred             EEEEEEECCCCCccCceEEEEeCCEEEEEEeccCCC
Q 043288          110 KFLRRFRLPENGKIDQVRASIEDGVLTVTVPKEEVK  145 (156)
Q Consensus       110 ~f~r~i~lP~~vd~~~i~A~~~nGvL~I~lPK~~~~  145 (156)
                      .|.-.+.|| ++..+.|+-.++++.|+|+..+....
T Consensus        12 ~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~~   46 (90)
T cd06470          12 NYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADEE   46 (90)
T ss_pred             eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcccc
Confidence            588889999 79999999999999999998876543

IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	156
1gme_A	151	Crystal Structure And Assembly Of An Eukaryotic Sma		4e-30
2byu_A	101	Negative Stain Em Reconstruction Of M.Tuberculosis		3e-24
2h50_A	93	Multiple Distinct Assemblies Reveal Conformational		2e-23
3gla_A	100	Crystal Structure Of The Hspa From Xanthomonas Axon		2e-07
3gt6_A	103	Crystal Structure Of The Hspa From Xanthomonas Axon		2e-07

>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat Shock Protein Length = 151

Iteration: 1
 Score =  126 bits (317), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 74/149 (49%), Positives = 101/149 (67%), Gaps = 5/149 (3%)
Query: 11  QRDSILDPFSFDVW-NPFKDF--AFPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLP 67
           +R ++ DPF+ D+W +PF  F    P++S     ET+A  N RMDWKETPEAHVFK DLP
Sbjct: 5   RRSNVFDPFA-DLWADPFDTFRSIVPAISGG-GSETAAFANARMDWKETPEAHVFKADLP 62
Query: 68  GLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVR 127
           G+ KE+VK+E+ED  VL ++ +R  E+EDKN+ WHRVERS GKF+RRFRL E+ K+++V+
Sbjct: 63  GVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVK 122
Query: 128 ASIEDGXXXXXXXXXXXXXXXXXAIEISG 156
           A +E+G                 AI+ISG
Sbjct: 123 AGLENGVLTVTVPKAEVKKPEVKAIQISG 151

>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer Length = 101

Iteration: 1
 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 72/86 (83%)
Query: 48  NTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERS 107
           N RMDWKETPEAHVFK DLPG+ KE+VK+E+ED  VL ++ +R  E+EDKN+ WHRVERS
Sbjct: 1   NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERS 60
Query: 108 RGKFLRRFRLPENGKIDQVRASIEDG 133
            GKF+RRFRL E+ K+++V+A +E+G
Sbjct: 61  SGKFVRRFRLLEDAKVEEVKAGLENG 86

>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational Flexibility In The Small Heat Shock Protein Hsp26 Length = 93

Iteration: 1
 Score =  104 bits (259), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 71/85 (83%)
Query: 49  TRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSR 108
            RMDWKETPEAHVFK DLPG+ KE+VK+E+ED  VL ++ +R  E+EDKN+ WHRVERS 
Sbjct: 1   ARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSS 60
Query: 109 GKFLRRFRLPENGKIDQVRASIEDG 133
           GKF+RRFRL E+ K+++V+A +E+G
Sbjct: 61  GKFVRRFRLLEDAKVEEVKAGLENG 85

>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis Length = 100

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 50  RMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRG 109
           R+D KE     V   DLPG+    +++++ D  +L I  +R  E   + E + R+ER  G
Sbjct: 6   RVDIKEEVNHFVLYADLPGIDPSQIEVQM-DKGILSIRGERKSESSTETERFSRIERRYG 64
Query: 110 KFLRRFRLPENGKIDQVRASIEDG 133
            F RRF LP++   D + A+  +G
Sbjct: 65  SFHRRFALPDSADADGITAAGRNG 88

>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis Length = 103

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 50  RMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRG 109
           R+D KE     V   DLPG+    +++++ D  +L I  +R  E   + E + R+ER  G
Sbjct: 9   RVDIKEEVNHFVLYADLPGIDPSQIEVQM-DKGILSIRGERKSESSTETERFSRIERRYG 67
Query: 110 KFLRRFRLPENGKIDQVRASIEDG 133
            F RRF LP++   D + A+  +G
Sbjct: 68  SFHRRFALPDSADADGITAAGRNG 91

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	156
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	2e-60
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	7e-44
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	3e-41
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	4e-40
2klr_A	175	Alpha-crystallin B chain; protein, dimer, oligomer	1e-17
2y1y_A	90	Alpha-crystallin B chain,; small heat shock protei	2e-17
2wj5_A	101	Heat shock protein beta-6; chaperone, disulfide bo	2e-16
3q9p_A	85	Heat shock protein beta-1; alpha-crystallin domain	4e-16
3l1e_A	106	Alpha-crystallin A chain; lens transparency, polyd	1e-14
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	1e-10
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	1e-08

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Length = 151

 Score =  182 bits (465), Expect = 2e-60
 Identities = 86/146 (58%), Positives = 111/146 (76%), Gaps = 1/146 (0%)

Query: 12  RDSILDPFSFDVWNPFKDF-AFPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLPGLT 70
           R ++ DPF+    +PF  F +     S    ET+A  N RMDWKETPEAHVFK DLPG+ 
Sbjct: 6   RSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVK 65

Query: 71  KEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASI 130
           KE+VK+E+ED  VL ++ +R  E+EDKN+ WHRVERS GKF+RRFRL E+ K+++V+A +
Sbjct: 66  KEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGL 125

Query: 131 EDGVLTVTVPKEEVKKPELKAIEISG 156
           E+GVLTVTVPK EVKKPE+KAI+ISG
Sbjct: 126 ENGVLTVTVPKAEVKKPEVKAIQISG 151

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Length = 100

 Score =  139 bits (352), Expect = 7e-44
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 50  RMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRG 109
           R+D KE     V   DLPG+    ++++++   +L I  +R  E   + E + R+ER  G
Sbjct: 6   RVDIKEEVNHFVLYADLPGIDPSQIEVQMDK-GILSIRGERKSESSTETERFSRIERRYG 64

Query: 110 KFLRRFRLPENGKIDQVRASIEDGVLTVTVPKEE 143
            F RRF LP++   D + A+  +GVL + +PK  
Sbjct: 65  SFHRRFALPDSADADGITAAGRNGVLEIRIPKRP 98

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Length = 123

 Score =  133 bits (336), Expect = 3e-41
 Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 7/129 (5%)

Query: 23  VWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHR 82
           ++   K+      S    R    +V   +D  E     V   DL G  KE +K  +    
Sbjct: 1   MYYLGKELQ--KRSEELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQN 58

Query: 83  VLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKID-QVRASIEDGVLTVTVPK 141
            L I A+R +           + +      +  RLP N   D ++    E+GVLT+ +P 
Sbjct: 59  ELIIEAEREITEPGV----KYLTQRPKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIPI 114

Query: 142 EEVKKPELK 150
                 + +
Sbjct: 115 AGTSVFKFE 123

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Length = 161

 Score =  131 bits (332), Expect = 4e-40
 Identities = 36/152 (23%), Positives = 53/152 (34%), Gaps = 5/152 (3%)

Query: 3   MIPSFFGNQRDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAHVF 62
           M   FF                 P    A  S +     + S      +   E  +    
Sbjct: 14  MFKEFFATPMT---GTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMPISIIEGDQHIKV 70

Query: 63  KVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVE-RSRGKFLRRFRLPENG 121
              LPG+ KED+ L       L+I A R+     ++E     E     +  R  +LP   
Sbjct: 71  IAWLPGVNKEDIILNAVG-DTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATV 129

Query: 122 KIDQVRASIEDGVLTVTVPKEEVKKPELKAIE 153
           K +   A  E+GVL+V +PK E    +   IE
Sbjct: 130 KEENASAKFENGVLSVILPKAESSIKKGINIE 161

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Length = 175

 Score = 74.6 bits (183), Expect = 1e-17
 Identities = 26/125 (20%), Positives = 58/125 (46%), Gaps = 10/125 (8%)

Query: 32  FPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRN 91
           F      F R  S       + +   +     +D+   + E++K+++     +++     
Sbjct: 47  FYLRPPSFLRAPSWFDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDV-IEVHG--- 102

Query: 92  VEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASI-EDGVLTVTVPKEEVKKPELK 150
            + E++ +    + R   +F R++R+P +     + +S+  DGVLTV  P+++V  PE +
Sbjct: 103 -KHEERQDEHGFISR---EFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPE-R 157

Query: 151 AIEIS 155
            I I+
Sbjct: 158 TIPIT 162

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Length = 90

 Score = 71.7 bits (176), Expect = 2e-17
 Identities = 21/96 (21%), Positives = 48/96 (50%), Gaps = 9/96 (9%)

Query: 54  KETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLR 113
               +     +D+   + E++K+++    V+++      + E++ +    + R    F R
Sbjct: 2   AMEKDRFSVNLDVKHFSPEELKVKVLG-DVIEVHG----KHEERQDEHGFISRE---FHR 53

Query: 114 RFRLPENGKIDQVRASI-EDGVLTVTVPKEEVKKPE 148
           ++R+P +     + +S+  DGVLTV  P+++V  PE
Sbjct: 54  KYRIPADVDPLTITSSMSSDGVLTVNGPRKQVSGPE 89

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Length = 101

 Score = 69.4 bits (170), Expect = 2e-16
 Identities = 16/102 (15%), Positives = 40/102 (39%), Gaps = 9/102 (8%)

Query: 54  KETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLR 113
              P      +D+   + E++ +++     +++ A      E++ +    + R   +F R
Sbjct: 7   PTDPGYFSVLLDVKHFSPEEISVKVVG-DHVEVHA----RHEERPDEHGFIAR---EFHR 58

Query: 114 RFRLPENGKIDQVRASI-EDGVLTVTVPKEEVKKPELKAIEI 154
           R+RLP       V +++  +GVL++       +         
Sbjct: 59  RYRLPPGVDPAAVTSALSPEGVLSIQATPASAQASLPSPPAA 100

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Length = 85

 Score = 68.1 bits (167), Expect = 4e-16
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 54  KETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLR 113
             T +     +D+     +++ ++ +D  V++IT  ++  R+D++    R       F R
Sbjct: 3   SHTADRWRVSLDVNHFAPDELTVKTKD-GVVEITG-KHAARQDEHGYISR------CFTR 54

Query: 114 RFRLPENGKIDQVRASI-EDGVLTVTVPKEE 143
           ++ LP      QV +S+  +G LTV  P  +
Sbjct: 55  KYTLPPGVDPTQVSSSLSPEGTLTVEAPMPK 85

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Length = 106

 Score = 64.5 bits (157), Expect = 1e-14
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 12/106 (11%)

Query: 54  KETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLR 113
           +   +  V  +D+   + ED+ +++++  V  I      +  ++ +    + R   +F R
Sbjct: 8   RSDRDKFVIFLDVKHFSPEDLTVKVQEDFVE-IHG----KHNERQDDHGYISR---EFHR 59

Query: 114 RFRLPENGKIDQVRASI-EDGVLTVTVPKEEVKKPEL---KAIEIS 155
           R+RLP N     +  S+  DG+LT + PK           +AI +S
Sbjct: 60  RYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPVS 105

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314

 Score = 57.1 bits (137), Expect = 1e-10
 Identities = 17/124 (13%), Positives = 38/124 (30%), Gaps = 5/124 (4%)

Query: 18  PFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLPGLTKEDVKLE 77
                               +   +    +        + + H+     P    +DVK+ 
Sbjct: 194 AIKLSPEKGLAIQPSEVQERQLAVKNKEGLEIVTAEDGSKKIHLELKVDPHFAPKDVKVW 253

Query: 78  IEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGVLTV 137
            + ++V  +          + +T +       +F + F  PE     + +A I DG++ V
Sbjct: 254 AKGNKVY-VHG----VTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEIVDGLMVV 308

Query: 138 TVPK 141
             P 
Sbjct: 309 EAPL 312

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314

 Score = 51.4 bits (122), Expect = 1e-08
 Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 10/142 (7%)

Query: 3   MIPSFFGNQRDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAHVF 62
           +         D+  +    ++         P L    P E   + +     K+       
Sbjct: 57  LFSLEPFTAMDNAFESVMKEMSAIQPREFHPELEYTQPGELDFLKDAYEVGKDGRLHFKV 116

Query: 63  KVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGK 122
             ++     E++ ++ +    L + A ++V   D   +            R   LP +  
Sbjct: 117 YFNVKNFKAEEITIKADK-NKLVVRAQKSVACGDAAMSES--------VGRSIPLPPSVD 167

Query: 123 IDQVRASI-EDGVLTVTVPKEE 143
            + ++A+I  D VL +  P  E
Sbjct: 168 RNHIQATITTDDVLVIEAPVNE 189

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	156
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	100.0
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	99.97
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	99.96
4fei_A	102	Heat shock protein-related protein; stress respons	99.95
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	99.94
3l1e_A	106	Alpha-crystallin A chain; lens transparency, polyd	99.93
2wj5_A	101	Heat shock protein beta-6; chaperone, disulfide bo	99.93
2klr_A	175	Alpha-crystallin B chain; protein, dimer, oligomer	99.92
3q9p_A	85	Heat shock protein beta-1; alpha-crystallin domain	99.9
2y1y_A	90	Alpha-crystallin B chain,; small heat shock protei	99.89
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	99.86
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	99.84
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	99.12
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	99.11
2k8q_A	134	Protein SHQ1; beta-sandwich, CS domain, nucleus, s	98.66
3eud_A	115	Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A	98.66
3igf_A	374	ALL4481 protein; two-domained protein consisting o	98.32
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	98.08
1wh0_A	134	Ubiquitin carboxyl-terminal hydrolase 19; USP, CS	98.02
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	97.96
3qor_A	121	Nuclear migration protein NUDC; beta-sandwich, cha	97.83
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	97.79
1wfi_A	131	Nuclear distribution gene C homolog; NUDC, riken s	97.66
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	97.56
2kmw_A	150	Uncharacterized protein AT3G03773; protein structu	97.49
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	97.31
2cg9_X	134	CO-chaperone protein SBA1; chaperone complex, HSP9	97.29
4fei_A	102	Heat shock protein-related protein; stress respons	85.16
3q9p_A	85	Heat shock protein beta-1; alpha-crystallin domain	85.11
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	80.62

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A

Probab=100.00  E-value=6.4e-35  Score=212.78  Aligned_cols=145  Identities=61%  Similarity=1.080  Sum_probs=122.2

Q ss_pred             CCccccccCCCCCCCCCCCCCCcc-CccCCC-----CCCCCCCCCCCCCcccccceeEEEECCCeEEEEEEcCCCCCCCe
Q 043288            1 MAMIPSFFGNQRDSILDPFSFDVW-NPFKDF-----AFPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLPGLTKEDV   74 (156)
Q Consensus         1 m~~~p~~~~~~~~~~~~pf~~~~~-d~~~~~-----~~~~~~~~~~~~~~~~~~p~~di~e~~~~~~i~~~lPG~~~edi   74 (156)
                      ||+++      +.+.|+||+ ++| |+|..|     ++...    ++.....+.|++||+|++++|+|.++|||+++++|
T Consensus         1 ms~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~di~e~~d~~~v~~dlPGv~kedI   69 (151)
T 1gme_A            1 MSIVR------RSNVFDPFA-DLWADPFDTFRSIVPAISGG----GSETAAFANARMDWKETPEAHVFKADLPGVKKEEV   69 (151)
T ss_dssp             -CCCC------SCCCBCTTC-GGGSSHHHHHHHHGGGTTSS----CCSHHHHGGGCEEEEECSSEEEEEEECTTCCGGGE
T ss_pred             Ccccc------cccccCchH-hhhhchhhhhhhhccccccc----ccccccccCCceEEEEcCCEEEEEEECCCCChHHE
Confidence            78773      257899998 888 776433     11111    23445567899999999999999999999999999


Q ss_pred             EEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEeCCEEEEEEeccCCCCCCeeEEec
Q 043288           75 KLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGVLTVTVPKEEVKKPELKAIEI  154 (156)
Q Consensus        75 ~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~nGvL~I~lPK~~~~~~~~~~I~I  154 (156)
                      +|++.+|+.|+|+|++..+.+.++.+|+++||.+|.|.|+|.||.+||.++|+|+|+||+|+|++||..++.++.++|+|
T Consensus        70 ~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK~~~~~~~~~~I~I  149 (151)
T 1gme_A           70 KVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQI  149 (151)
T ss_dssp             EEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEEEEETTEEEEEEECCCCCTTCCCCCCC
T ss_pred             EEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCCCccccceEEEEECCEEEEEEEccCcCCCCCeEeee
Confidence            99996446999999998877667789999999999999999999999999999999999999999999877777799999


Q ss_pred             CC
Q 043288          155 SG  156 (156)
Q Consensus       155 ~~  156 (156)
                      +|
T Consensus       150 ~~  151 (151)
T 1gme_A          150 SG  151 (151)
T ss_dssp             CC
T ss_pred             CC
Confidence            86

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A

Probab=99.97  E-value=4.1e-31  Score=194.41  Aligned_cols=104  Identities=29%  Similarity=0.346  Sum_probs=95.5

Q ss_pred             ceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEee-eceEEEEEEECCCCCccCceE
Q 043288           49 TRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVER-SRGKFLRRFRLPENGKIDQVR  127 (156)
Q Consensus        49 p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~-~~~~f~r~i~lP~~vd~~~i~  127 (156)
                      +++||+|++++|+|.++|||++++||+|++++ +.|+|+|++..+...++.+|+++|| .+|.|.|+|.||.+||.++|+
T Consensus        57 ~pvdi~e~~~~~~v~~dlPG~~~edi~V~~~~-~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~vd~~~i~  135 (161)
T 4eld_A           57 MPISIIEGDQHIKVIAWLPGVNKEDIILNAVG-DTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENAS  135 (161)
T ss_dssp             CCEEEEECSSEEEEEEECTTCCGGGEEEEEET-TEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCBCGGGCE
T ss_pred             cceeEEEeCCEEEEEEECCCCChHhEEEEEEC-CEEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCCcccccEE
Confidence            45999999999999999999999999999998 5999999998866666778999999 999999999999999999999


Q ss_pred             EEEeCCEEEEEEeccCCCCCCeeEEecC
Q 043288          128 ASIEDGVLTVTVPKEEVKKPELKAIEIS  155 (156)
Q Consensus       128 A~~~nGvL~I~lPK~~~~~~~~~~I~I~  155 (156)
                      |+|+||+|+|++||.+.++  .++|+|+
T Consensus       136 A~~~nGvL~I~lpK~~~~~--~r~I~Ie  161 (161)
T 4eld_A          136 AKFENGVLSVILPKAESSI--KKGINIE  161 (161)
T ss_dssp             EEEETTEEEEEEEBCGGGS--CCCCCCC
T ss_pred             EEEECCEEEEEEEcCCCCC--CcEeecC
Confidence            9999999999999987654  4888886

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A

Probab=99.96  E-value=3.2e-29  Score=170.59  Aligned_cols=98  Identities=32%  Similarity=0.601  Sum_probs=91.4

Q ss_pred             cccceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCc
Q 043288           46 IVNTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQ  125 (156)
Q Consensus        46 ~~~p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~  125 (156)
                      .|.|++||+|++++|+|.++|||+++++|+|++++ +.|+|+|++..+...+...|+++||.+|.|.|+|.||.+||.++
T Consensus         2 ~~~P~~di~e~~~~~~v~~~lPG~~~edi~v~~~~-~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~   80 (100)
T 3gla_A            2 QWVPRVDIKEEVNHFVLYADLPGIDPSQIEVQMDK-GILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADG   80 (100)
T ss_dssp             CSCCCEEEEECSSEEEEEEECTTSCGGGCEEEEET-TEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCTTS
T ss_pred             CccCcEEEEECCCEEEEEEECCCCCHHHEEEEEEC-CEEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCCCcChHH
Confidence            46799999999999999999999999999999997 59999999988777777899999999999999999999999999


Q ss_pred             eEEEEeCCEEEEEEeccCC
Q 043288          126 VRASIEDGVLTVTVPKEEV  144 (156)
Q Consensus       126 i~A~~~nGvL~I~lPK~~~  144 (156)
                      |+|+|+||+|+|++||.++
T Consensus        81 i~A~~~~GvL~I~~pK~~~   99 (100)
T 3gla_A           81 ITAAGRNGVLEIRIPKRPA   99 (100)
T ss_dssp             CEEEEETTEEEEEEEBC--
T ss_pred             eEEEEeCCEEEEEEecCCC
Confidence            9999999999999999864

>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}

Probab=99.95  E-value=1.2e-27  Score=163.63  Aligned_cols=95  Identities=26%  Similarity=0.416  Sum_probs=88.0

Q ss_pred             ccccceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccC
Q 043288           45 AIVNTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKID  124 (156)
Q Consensus        45 ~~~~p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~  124 (156)
                      +.+.|++||+|++++|+|.++|||+++++|+|++++ +.|+|+|++..     ..+|+++||.+|.|.|+|.||..||.+
T Consensus         3 g~~~P~~di~e~~~~~~v~~~lPG~~~edi~v~~~~-~~L~I~g~~~~-----~~~~~~~er~~g~f~R~~~LP~~vd~~   76 (102)
T 4fei_A            3 GPWTPAADWRDAGTHLDLLLDVPGVDAGTLALAEDG-GQLTVSGERPG-----TEHLLRSERPSGRFVRELAFPEPVRPA   76 (102)
T ss_dssp             EECCCCEEEEEETTEEEEEEECTTCCGGGCEEEEET-TEEEEEEEECC-----CSSCSSCCSEEEEEEEEEECSSCBCTT
T ss_pred             CcccCcEEEEEcCCEEEEEEECCCCchHhEEEEEEC-CEEEEEEEEec-----CCCEEEEEEeccEEEEEEECCCCcchh
Confidence            556799999999999999999999999999999997 59999999853     357889999999999999999999999


Q ss_pred             ceEEEEeCCEEEEEEeccCCC
Q 043288          125 QVRASIEDGVLTVTVPKEEVK  145 (156)
Q Consensus       125 ~i~A~~~nGvL~I~lPK~~~~  145 (156)
                      +|+|+|+||+|+|++||..+.
T Consensus        77 ~i~A~~~~GvL~I~lpK~~~~   97 (102)
T 4fei_A           77 SGVASLAGGVLTVRFEKLRPT   97 (102)
T ss_dssp             CCEEEEETTEEEEEEEBSSCC
T ss_pred             HcEEEEECCEEEEEEEccCcc
Confidence            999999999999999998754

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A

Probab=99.94  E-value=2.2e-27  Score=167.31  Aligned_cols=96  Identities=27%  Similarity=0.364  Sum_probs=87.8

Q ss_pred             cccceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCc
Q 043288           46 IVNTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQ  125 (156)
Q Consensus        46 ~~~p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~  125 (156)
                      .+.|++||+|++++|+|.++|||+++++|+|++.+++.|+|+|++..+.   +.+|+++||.+ .|.|+|.||.+||.++
T Consensus        22 ~~~P~~di~e~~~~~~v~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~---~~~~~~~Er~~-~f~R~~~LP~~vd~~~   97 (123)
T 3aab_A           22 LVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITE---PGVKYLTQRPK-YVRKVIRLPYNVAKDA   97 (123)
T ss_dssp             HHCSCEEEEEETTEEEEEEECCSCCGGGCEEEEETTTEEEEEEECCCCC---CSCEEEECSCS-EEEEEEECSSEECTTC
T ss_pred             cCCCcEEEEEcCCEEEEEEECCCCCHHHEEEEEeCCCEEEEEEEEeccC---CCeEEEEEEeE-EEEEEEECCCCcCcch
Confidence            3469999999999999999999999999999999724999999987654   57899999999 9999999999999999


Q ss_pred             e-EEEEeCCEEEEEEeccCCC
Q 043288          126 V-RASIEDGVLTVTVPKEEVK  145 (156)
Q Consensus       126 i-~A~~~nGvL~I~lPK~~~~  145 (156)
                      | +|.|+||+|+|++||...+
T Consensus        98 i~~A~~~~GvL~I~lPK~~~~  118 (123)
T 3aab_A           98 EISGKYENGVLTIRIPIAGTS  118 (123)
T ss_dssp             CCEEEEETTEEEEEEEGGGEE
T ss_pred             hCeeEEcCCEEEEEEEcCCCC
Confidence            9 9999999999999998753

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A

Probab=99.93  E-value=2.2e-25  Score=153.38  Aligned_cols=99  Identities=24%  Similarity=0.421  Sum_probs=85.7

Q ss_pred             ceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEE
Q 043288           49 TRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRA  128 (156)
Q Consensus        49 p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A  128 (156)
                      ...+|+|++++|+|.++|||++++||+|++++ +.|+|+|++.....  ...|+++|     |.|+|.||.+||.++|+|
T Consensus         3 g~~~i~e~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~~~~--~~~~~~~e-----F~R~~~LP~~vd~~~i~A   74 (106)
T 3l1e_A            3 GISEVRSDRDKFVIFLDVKHFSPEDLTVKVQE-DFVEIHGKHNERQD--DHGYISRE-----FHRRYRLPSNVDQSALSC   74 (106)
T ss_dssp             CSEEEEECSSEEEEEEECTTSCGGGEEEEEET-TEEEEEEEEEEEET--TTEEEEEE-----EEEEEECCTTBCTTSCEE
T ss_pred             CceEEEEcCCEEEEEEECCCCChHHEEEEEEC-CEEEEEEEEccccC--CCCEEEEE-----EEEEEECCCCcChhHcEE
Confidence            34799999999999999999999999999998 59999999765432  34565544     999999999999999999


Q ss_pred             EE-eCCEEEEEEeccCCCC---CCeeEEecC
Q 043288          129 SI-EDGVLTVTVPKEEVKK---PELKAIEIS  155 (156)
Q Consensus       129 ~~-~nGvL~I~lPK~~~~~---~~~~~I~I~  155 (156)
                      .| +||+|+|++||..+..   .+.|+|+|+
T Consensus        75 ~~s~~GvL~I~~PK~~~~~~~~~~~r~I~I~  105 (106)
T 3l1e_A           75 SLSADGMLTFSGPKIPSGVDAGHSERAIPVS  105 (106)
T ss_dssp             EECTTSEEEEEEEBCCCCTTTTSSSCCCCCC
T ss_pred             EECCCCEEEEEEEccCcccccCCCCeEeeec
Confidence            99 8999999999998753   467999986

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}

Probab=99.93  E-value=4e-25  Score=150.83  Aligned_cols=97  Identities=15%  Similarity=0.277  Sum_probs=82.5

Q ss_pred             eeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEE
Q 043288           50 RMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRAS  129 (156)
Q Consensus        50 ~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~  129 (156)
                      .+||+|++++|+|.++|||++++||+|++.+ +.|+|+|++..+.  ++..|+++|     |.|+|.||.+||.++|+|.
T Consensus         3 ~vdi~e~~~~~~v~~dlPG~~~edI~V~v~~-~~L~I~g~~~~~~--~~~~~~~~e-----F~R~~~LP~~vd~~~i~A~   74 (101)
T 2wj5_A            3 MAQVPTDPGYFSVLLDVKHFSPEEISVKVVG-DHVEVHARHEERP--DEHGFIARE-----FHRRYRLPPGVDPAAVTSA   74 (101)
T ss_dssp             CCCCCCCSSCEEEEEECTTSCGGGEEEEEET-TEEEEEEEEEECS--STTCCEEEE-----EEEEEECCTTBCTTCCEEE
T ss_pred             cEEEEEeCCEEEEEEECCCCcHHHeEEEEEC-CEEEEEEEEeccc--CCCCEEEEE-----EEEEEECCCCcChhHCEEE
Confidence            4799999999999999999999999999997 5999999987643  334566665     9999999999999999999


Q ss_pred             E-eCCEEEEEEeccCCCCCCeeEEec
Q 043288          130 I-EDGVLTVTVPKEEVKKPELKAIEI  154 (156)
Q Consensus       130 ~-~nGvL~I~lPK~~~~~~~~~~I~I  154 (156)
                      | +||+|+|++||....++++.+|.+
T Consensus        75 ~s~nGvL~I~lPK~~~~~~~~~~i~~  100 (101)
T 2wj5_A           75 LSPEGVLSIQATPASAQASLPSPPAA  100 (101)
T ss_dssp             ECTTSEEEEEECBCCCCCSSCC----
T ss_pred             ECCCCEEEEEEECCCcCCCCCCcccc
Confidence            9 899999999999887776666543

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A

Probab=99.92  E-value=2.7e-25  Score=165.32  Aligned_cols=97  Identities=21%  Similarity=0.416  Sum_probs=73.4

Q ss_pred             eeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEE
Q 043288           50 RMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRAS  129 (156)
Q Consensus        50 ~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~  129 (156)
                      .+||+|++++|+|.++|||++++||+|++.+ +.|+|+|++..+.  ++..|+++|     |.|+|.||.+||.++|+|+
T Consensus        65 ~~dv~e~~d~~~v~~dlPG~~~edI~V~v~~-~~L~I~g~~~~~~--~~~~~~~re-----F~R~~~LP~~Vd~~~i~A~  136 (175)
T 2klr_A           65 LSEMRLEKDRFSVNLDVKHFSPEELKVKVLG-DVIEVHGKHEERQ--DEHGFISRE-----FHRKYRIPADVDPLTITSS  136 (175)
T ss_dssp             ----CCCCSEEEEEECCSSCCGGGEEEEEET-TEEEEEEEEEEEE--ETTEEEEEE-----EEEEEECTTTCCTTTCEEE
T ss_pred             ceEEEEcCCeEEEEEECCCCChHHEEEEEEC-CEEEEEEEEcccc--cCCceEEEE-----EEEEEECCCCcChhHeEEE
Confidence            3799999999999999999999999999998 5999999986643  234666655     9999999999999999999


Q ss_pred             E-eCCEEEEEEeccCCCCCCeeEEecC
Q 043288          130 I-EDGVLTVTVPKEEVKKPELKAIEIS  155 (156)
Q Consensus       130 ~-~nGvL~I~lPK~~~~~~~~~~I~I~  155 (156)
                      | +||+|+|++||...+. ..++|+|+
T Consensus       137 ~s~dGvL~I~lPK~~~~~-~~r~I~I~  162 (175)
T 2klr_A          137 LSSDGVLTVNGPRKQVSG-PERTIPIT  162 (175)
T ss_dssp             ECTTSCEEEEEECC-------------
T ss_pred             EcCCCEEEEEEECCCCCC-CCeEEEEe
Confidence            9 7999999999986543 35889886

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A

Probab=99.90  E-value=1.9e-23  Score=138.28  Aligned_cols=82  Identities=22%  Similarity=0.394  Sum_probs=69.2

Q ss_pred             EEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEe-
Q 043288           53 WKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIE-  131 (156)
Q Consensus        53 i~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~-  131 (156)
                      +.|++++|.|.++|||+++++|+|++.+ +.|+|+|++.....+  .     +..+++|.|+|.||.+||.++|+|.|+ 
T Consensus         2 ~~E~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~~~~~--~-----~~~~~~F~R~~~LP~~vd~~~i~A~~~~   73 (85)
T 3q9p_A            2 GSHTADRWRVSLDVNHFAPDELTVKTKD-GVVEITGKHAARQDE--H-----GYISRCFTRKYTLPPGVDPTQVSSSLSP   73 (85)
T ss_dssp             -CCCCCEEEEEEECTTTCCSEEEEEEET-TEEEEEEEEC--------------CCCEEEEEEEECCTTCCGGGCEEEECT
T ss_pred             ccCcCCEEEEEEECCCCChHHEEEEEEC-CEEEEEEEEccccCC--C-----CEEEEEEEEEEECCCCcChHHcEEEECC
Confidence            4689999999999999999999999998 599999998765322  1     124678999999999999999999998 


Q ss_pred             CCEEEEEEecc
Q 043288          132 DGVLTVTVPKE  142 (156)
Q Consensus       132 nGvL~I~lPK~  142 (156)
                      ||+|+|++||.
T Consensus        74 ~GvL~I~lPK~   84 (85)
T 3q9p_A           74 EGTLTVEAPMP   84 (85)
T ss_dssp             TSEEEEEEECC
T ss_pred             CCEEEEEEEcC
Confidence            99999999995

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A

Probab=99.89  E-value=8.4e-23  Score=136.48  Aligned_cols=85  Identities=22%  Similarity=0.467  Sum_probs=69.7

Q ss_pred             ECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEE-eCC
Q 043288           55 ETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASI-EDG  133 (156)
Q Consensus        55 e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~-~nG  133 (156)
                      +++++|+|.++|||+++++|+|++.+ +.|+|+|++....  ++..|+++|     |.|+|.||.+||.++|+|.| +||
T Consensus         3 ~~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~~~e-----f~R~~~LP~~vd~~~i~A~~~~~G   74 (90)
T 2y1y_A            3 MEKDRFSVNLDVKHFSPEELKVKVLG-DVIEVHGKHEERQ--DEHGFISRE-----FHRKYRIPADVDPLTITSSMSSDG   74 (90)
T ss_dssp             ---CCEEEEEECTTSCGGGEEEEEET-TEEEEEEEEEEEE--CSSSEEEEE-----EEEEEECCTTBCGGGCEEEECTTS
T ss_pred             cCCCEEEEEEECCCCcHHHeEEEEEC-CEEEEEEEEeccc--CCCCEEEEE-----EEEEEECCCCcChhHcEEEECCCC
Confidence            67899999999999999999999997 5999999987653  345676654     99999999999999999999 899


Q ss_pred             EEEEEEeccCCCCC
Q 043288          134 VLTVTVPKEEVKKP  147 (156)
Q Consensus       134 vL~I~lPK~~~~~~  147 (156)
                      +|+|++||...+.+
T Consensus        75 vL~I~~pK~~~~~p   88 (90)
T 2y1y_A           75 VLTVNGPRKQVSGP   88 (90)
T ss_dssp             EEEEEECBC-----
T ss_pred             EEEEEEEcCCCCCC
Confidence            99999999876554

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=99.86  E-value=1e-21  Score=157.71  Aligned_cols=91  Identities=19%  Similarity=0.280  Sum_probs=81.9

Q ss_pred             ccceeEEEECCC----eEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCc
Q 043288           47 VNTRMDWKETPE----AHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGK  122 (156)
Q Consensus        47 ~~p~~di~e~~~----~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd  122 (156)
                      +.|++||+|+++    +|+|.++|||+++++|+|++.+ +.|+|+|++..+.+.        ++.+|.|.|+|.||.+||
T Consensus        97 ~~p~vDi~E~~~dgk~~~~v~~dlPG~~~edI~V~v~~-~~L~I~ge~~~~~e~--------~r~~g~F~R~~~LP~~Vd  167 (314)
T 2bol_A           97 LDFLKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADK-NKLVVRAQKSVACGD--------AAMSESVGRSIPLPPSVD  167 (314)
T ss_dssp             TGGGGGCEEECTTSSEEEEEEEECTTCCTTTEEEEEET-TEEEEEECCBSSTTC--------CCBCCCEEEEEECCTTBC
T ss_pred             CCCccceEEcCCCCceEEEEEEECCCCchHHeEEEEEC-CEEEEEEEEeccCCC--------CEEEEEEEEEEECCCCcc
Confidence            679999999999    9999999999999999999998 599999998754321        277899999999999999


Q ss_pred             cCceEEEEe-CCEEEEEEeccCCCC
Q 043288          123 IDQVRASIE-DGVLTVTVPKEEVKK  146 (156)
Q Consensus       123 ~~~i~A~~~-nGvL~I~lPK~~~~~  146 (156)
                      .++|+|+|+ ||+|+|++||..++.
T Consensus       168 ~e~i~A~~~~nGVL~I~lPK~~~~~  192 (314)
T 2bol_A          168 RNHIQATITTDDVLVIEAPVNEPNY  192 (314)
T ss_dssp             GGGCEEEECSSSEEEEEEEBSSCCT
T ss_pred             ccccEEEEeCCCEEEEEEeccCccc
Confidence            999999999 999999999987653

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=99.84  E-value=5.7e-21  Score=153.40  Aligned_cols=89  Identities=18%  Similarity=0.274  Sum_probs=70.7

Q ss_pred             ceeEEEECC---CeEEEEEEc-CCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccC
Q 043288           49 TRMDWKETP---EAHVFKVDL-PGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKID  124 (156)
Q Consensus        49 p~~di~e~~---~~~~i~~~l-PG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~  124 (156)
                      ...+|.+++   ++|.|.++| ||++++||+|++++ +.|+|+|+++.+.+    .++++||.+|.|.|+|.||++||.+
T Consensus       221 ~~~~i~e~~~~~~~~~v~~~ldPG~~~edi~V~v~~-~~LtI~ge~~~~~~----~~~~~Er~~g~F~R~~~LP~~vd~~  295 (314)
T 2bol_A          221 EGLEIVTAEDGSKKIHLELKVDPHFAPKDVKVWAKG-NKVYVHGVTGKEEK----TENASHSEHREFYKAFVTPEVVDAS  295 (314)
T ss_dssp             CEEEEEECTTSCEEEEEEEECCTTCCGGGEEEEESS-SEEEEEEEEC----------------CEEEEEEEECSSEECGG
T ss_pred             CCCcEEEecCCCcEEEEEEEcCCCCChHHeEEEEEC-CEEEEEEEEeccCC----ceEEEEEeeeEEEEEEECCCCcChH
Confidence            446777755   479999999 99999999999997 59999999876543    5788999999999999999999999


Q ss_pred             ceEEEEeCCEEEEEEecc
Q 043288          125 QVRASIEDGVLTVTVPKE  142 (156)
Q Consensus       125 ~i~A~~~nGvL~I~lPK~  142 (156)
                      +|+|+|+||||+|++||.
T Consensus       296 ~i~A~~~dGvL~i~~Pk~  313 (314)
T 2bol_A          296 KTQAEIVDGLMVVEAPLF  313 (314)
T ss_dssp             GCEEEEETTEEEEEEEEE
T ss_pred             HeEEEEeCCEEEEEEecC
Confidence            999999999999999986

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=99.12  E-value=3.4e-10  Score=77.81  Aligned_cols=81  Identities=16%  Similarity=0.248  Sum_probs=71.3

Q ss_pred             cceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceE
Q 043288           48 NTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVR  127 (156)
Q Consensus        48 ~p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~  127 (156)
                      .++++++++++.+.|.+.+||+.++++.|.+.+ +.|.|++....               ...|...+.|+..|+++..+
T Consensus         9 ~~~~~W~Qt~~~V~v~i~l~~v~~~~v~v~~~~-~~l~v~~~~~~---------------~~~y~~~~~L~~~I~~e~s~   72 (114)
T 1rl1_A            9 KIKYDWYQTESQVVITLMIKNVQKNDVNVEFSE-KELSALVKLPS---------------GEDYNLKLELLHPIIPEQST   72 (114)
T ss_dssp             CCCEEEEECSSEEEEEECCCSCCGGGEEEECSS-SCEEEEEECTT---------------SSEEEEEECBSSCCCGGGEE
T ss_pred             CCCccEEeCCCEEEEEEEeCCCCHHHCEEEEEc-CEEEEEEEeCC---------------CcEEEEEeeCCCcCCccccE
Confidence            577999999999999999999999999999997 58999986421               12477889999999999999


Q ss_pred             EEEeCCEEEEEEeccCC
Q 043288          128 ASIEDGVLTVTVPKEEV  144 (156)
Q Consensus       128 A~~~nGvL~I~lPK~~~  144 (156)
                      +++.+|.|.|+|+|+++
T Consensus        73 ~~~~~~~l~i~L~K~~~   89 (114)
T 1rl1_A           73 FKVLSTKIEIKLKKPEA   89 (114)
T ss_dssp             EEECSSSEEEEEECSSC
T ss_pred             EEEECCEEEEEEEcCCC
Confidence            99999999999999864

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*

Probab=99.11  E-value=3.6e-10  Score=74.61  Aligned_cols=81  Identities=16%  Similarity=0.305  Sum_probs=70.9

Q ss_pred             cceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceE
Q 043288           48 NTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVR  127 (156)
Q Consensus        48 ~p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~  127 (156)
                      .++++++++++.+.|.+.+||+.++++.|.+.+ +.|.|++....     +          ..|...+.|+..|+++..+
T Consensus         2 ~~~~~W~Qt~~~V~v~i~~~~v~~~~v~v~~~~-~~l~v~~~~~~-----~----------~~y~~~~~L~~~I~~~~s~   65 (92)
T 2xcm_C            2 KYRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGE-QILSVVIEVPG-----E----------DAYYLQPRLFGKIIPDKCK   65 (92)
T ss_dssp             CSEEEEEEETTEEEEEEECCSCCGGGEEEEECS-SBEEEEECCTT-----S----------CCEEECCBBSSCBCGGGCE
T ss_pred             CccccEEeCCCEEEEEEEECCCChHHeEEEEEC-CEEEEEEEcCC-----C----------cEEEEeeEcCCccCchhEE
Confidence            478999999999999999999999999999997 58999975421     1          1377889999999999999


Q ss_pred             EEEeCCEEEEEEeccCC
Q 043288          128 ASIEDGVLTVTVPKEEV  144 (156)
Q Consensus       128 A~~~nGvL~I~lPK~~~  144 (156)
                      +.+.+|.|.|+|.|+++
T Consensus        66 ~~~~~~~l~i~L~K~~~   82 (92)
T 2xcm_C           66 YEVLSTKIEICLAKADI   82 (92)
T ss_dssp             EEECSSCEEEEEEBSSS
T ss_pred             EEEECCEEEEEEEcCCC
Confidence            99999999999999864

>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}

Probab=98.66  E-value=7.3e-08  Score=67.97  Aligned_cols=77  Identities=16%  Similarity=0.287  Sum_probs=67.4

Q ss_pred             cceeEEEECCCeEEEEEEcCCCC--CCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCC-ccC
Q 043288           48 NTRMDWKETPEAHVFKVDLPGLT--KEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENG-KID  124 (156)
Q Consensus        48 ~p~~di~e~~~~~~i~~~lPG~~--~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~v-d~~  124 (156)
                      .|...+.++++.++|.|.+|...  ..++++.|++ +.+.....                    .|.-++.||..| |.+
T Consensus         3 TP~F~itQd~e~viV~Ik~P~~~~~~sdiei~v~~-~~F~F~~~--------------------PYyLRL~LP~~V~e~~   61 (134)
T 2k8q_A            3 TPRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQE-NMIIFHLS--------------------PYYLRLRFPHELIDDE   61 (134)
T ss_dssp             CSEEEEEECSSEEEEEEECCSSCCCSSSCCCEECS-SSEEECSS--------------------SSCEEECCSSCEECCS
T ss_pred             CceEEEEECCCEEEEEEEcCccccCccccEEEEeC-CEEEEecC--------------------CeEEEecCCCeeecCC
Confidence            58899999999999999999999  8999999997 68888732                    255679999997 888


Q ss_pred             ceEEEE--eCCEEEEEEeccCCC
Q 043288          125 QVRASI--EDGVLTVTVPKEEVK  145 (156)
Q Consensus       125 ~i~A~~--~nGvL~I~lPK~~~~  145 (156)
                      ..+|+|  +.|.|+|++||..+.
T Consensus        62 ~~kA~YD~d~~~~~VtLpK~~~G   84 (134)
T 2k8q_A           62 RSTAQYDSKDECINVKVAKLNKN   84 (134)
T ss_dssp             SCEEEEETTTTEEEEEEEESSTT
T ss_pred             CcceeEeccCCEEEEEEeCCCCC
Confidence            899999  599999999998754

>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}

Probab=98.66  E-value=4.2e-07  Score=62.18  Aligned_cols=80  Identities=15%  Similarity=0.305  Sum_probs=68.0

Q ss_pred             cccceeEEEECCCeEEEEEEcCCCC--CCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCC-c
Q 043288           46 IVNTRMDWKETPEAHVFKVDLPGLT--KEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENG-K  122 (156)
Q Consensus        46 ~~~p~~di~e~~~~~~i~~~lPG~~--~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~v-d  122 (156)
                      ...|...|.++++.++|.+.+|.+.  ..++++.+++ +.+....+                    .|.-++.||..+ +
T Consensus        15 ~iTP~F~itQDdefv~I~I~~p~ir~~a~~~ei~vd~-~~F~F~~~--------------------PYyLRL~lP~~vve   73 (115)
T 3eud_A           15 MITPRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQE-NMIIFHLS--------------------PYYLRLRFPHELID   73 (115)
T ss_dssp             CBCCCEEEEECSSEEEEEEECCSCCCCSSSCEEEEET-TEEEEEET--------------------TEEEEEECSSCEEC
T ss_pred             EeCCcEEEEECCCEEEEEEEcCceecccCccEEEEeC-CEEEEecC--------------------CeEEEEecCcceec
Confidence            3469999999999999999999876  7899999997 68888843                    266779999985 7


Q ss_pred             cCceEEEE--eCCEEEEEEeccCCCC
Q 043288          123 IDQVRASI--EDGVLTVTVPKEEVKK  146 (156)
Q Consensus       123 ~~~i~A~~--~nGvL~I~lPK~~~~~  146 (156)
                      .+.-+|+|  ++|.++|++||..+.+
T Consensus        74 d~~~~A~YD~d~g~~~v~lpK~~~GE   99 (115)
T 3eud_A           74 DERSTAQYDSKDECINVKVAKLNKNE   99 (115)
T ss_dssp             STTCEEEEETTTTEEEEEEEESSTTC
T ss_pred             CCCcceEEeCCCcEEEEEEcCCcCCC
Confidence            77789999  5999999999987643

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}

Probab=98.32  E-value=2.1e-06  Score=70.23  Aligned_cols=72  Identities=18%  Similarity=0.241  Sum_probs=61.0

Q ss_pred             ceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCc-eE
Q 043288           49 TRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQ-VR  127 (156)
Q Consensus        49 p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~-i~  127 (156)
                      +++.|.+.  .|.+++.|||+++++|++...++ .|+|+                    .|.|.|.|.||..+.... ..
T Consensus       298 ~~~~i~~~--~~~~~l~lP~~~~~~~~l~~~gd-eL~v~--------------------~g~~rR~i~LP~~L~~~~v~~  354 (374)
T 3igf_A          298 KPITIDTH--NRQVRLFLPGFDKKQVKLTQYGP-EVTVE--------------------AGDQRRNIFLPPALSGRPITG  354 (374)
T ss_dssp             CSEEEETT--TTEEEEECTTCCGGGCEEEEETT-EEEEE--------------------ETTEEEEEECCTTTTTCCEEE
T ss_pred             CCEEEEec--cEEEEEECCCCCHHHeEEEEECC-eEEEE--------------------ECCEeecccCCHHHcCCCccc
Confidence            45665444  89999999999999999999964 99999                    667999999999977665 78


Q ss_pred             EEEeCCEEEEEEeccC
Q 043288          128 ASIEDGVLTVTVPKEE  143 (156)
Q Consensus       128 A~~~nGvL~I~lPK~~  143 (156)
                      |+|+||.|+|++-...
T Consensus       355 A~~~~~~L~i~~~~~~  370 (374)
T 3igf_A          355 AKFQNNYLIISFLEHH  370 (374)
T ss_dssp             EEEETTEEEEEECCC-
T ss_pred             cEEECCEEEEEEehhc
Confidence            9999999999997543

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.08  E-value=7.8e-05  Score=51.86  Aligned_cols=81  Identities=10%  Similarity=0.226  Sum_probs=67.6

Q ss_pred             cceeEEEECCCeEEEEEEcCCC---CCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEE-CCCCCcc
Q 043288           48 NTRMDWKETPEAHVFKVDLPGL---TKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFR-LPENGKI  123 (156)
Q Consensus        48 ~p~~di~e~~~~~~i~~~lPG~---~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~-lP~~vd~  123 (156)
                      .++++++++.+.+.|.+.+||+   .++++.|.+.. +.|.|++....     +.          .|.-.+. |-..|++
T Consensus        20 ~~~y~W~Qt~~~V~i~I~l~~~~~~~~~~v~V~~~~-~~l~v~~~~~~-----~~----------~y~~~~~~L~~~I~~   83 (127)
T 1x5m_A           20 ISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTE-RSFDLLVKNLN-----GK----------SYSMIVNNLLKPISV   83 (127)
T ss_dssp             CCSCEEEEETTEEEEEEECTTTTTSCTTSEEEEECS-SEEEEEECSCS-----SS----------CEEEEEECBSSCCCT
T ss_pred             ccEEEEEcCCCEEEEEEEeCCCCcCCccccEEEEEc-CEEEEEEEcCC-----CC----------cEEEEhHHhcCccCc
Confidence            4689999999999999999999   88999999997 58999864211     11          2666775 9899999


Q ss_pred             CceEEEEeCCEEEEEEeccCC
Q 043288          124 DQVRASIEDGVLTVTVPKEEV  144 (156)
Q Consensus       124 ~~i~A~~~nGvL~I~lPK~~~  144 (156)
                      ++.+.....+.+.|+|-|+.+
T Consensus        84 e~S~~~v~~~kVei~L~K~~~  104 (127)
T 1x5m_A           84 EGSSKKVKTDTVLILCRKKVE  104 (127)
T ss_dssp             TTCEEEEETTEEEEEEECSSS
T ss_pred             ccCEEEEeCCEEEEEEEECCC
Confidence            998988999999999999864

>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=98.02  E-value=6.1e-05  Score=53.11  Aligned_cols=88  Identities=10%  Similarity=0.142  Sum_probs=69.5

Q ss_pred             cceeEEEEC-CCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccc-----cCCCccEEEEeeeceEEEEEEECCCCC
Q 043288           48 NTRMDWKET-PEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVER-----EDKNETWHRVERSRGKFLRRFRLPENG  121 (156)
Q Consensus        48 ~p~~di~e~-~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~-----~~~~~~~~~~e~~~~~f~r~i~lP~~v  121 (156)
                      .++.+|+++ .+.+.|.+.++++.++++.|.+.. +.|.|+.......     ...+.        ...|.-.+.|-..|
T Consensus        19 ~~r~~W~Qt~~~~V~vtI~~k~v~~~~v~V~f~~-~~l~v~~~~~~~~~l~~~~a~g~--------~~~y~~~~~L~~~I   89 (134)
T 1wh0_A           19 FVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFRE-QDFTLIFQTRDGNFLRLHPGCGP--------HTTFRWQVKLRNLI   89 (134)
T ss_dssp             CCCEEEEEETTTEEEEEEECCSBCTTSCEEEECS-SEEEEEECBCCHHHHHHSTTCCT--------TSCEEEEEEBSSCE
T ss_pred             CCCeEEEcCCCCEEEEEEEeCCCCcccCEEEEEC-CEEEEEEEcCCCcccccccccCc--------ceeEEEeccccccC
Confidence            578999999 999999999999999999999998 5899986532211     00000        00377778899999


Q ss_pred             ccCceEEEEeCCEEEEEEeccCC
Q 043288          122 KIDQVRASIEDGVLTVTVPKEEV  144 (156)
Q Consensus       122 d~~~i~A~~~nGvL~I~lPK~~~  144 (156)
                      +++..+.+...+.+.|+|.|++.
T Consensus        90 ~pe~S~~~v~~~kIeI~L~K~e~  112 (134)
T 1wh0_A           90 EPEQCTFCFTASRIDICLRKRQS  112 (134)
T ss_dssp             EEEEEEEEECSSEEEEEEEESSS
T ss_pred             CchhCEEEEeCCEEEEEEEECCC
Confidence            99988888889999999999854

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4

Probab=97.96  E-value=0.00016  Score=50.05  Aligned_cols=85  Identities=15%  Similarity=0.255  Sum_probs=67.4

Q ss_pred             cccccceeEEEECCCeEEEEEEcC-CC-CCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCC
Q 043288           44 SAIVNTRMDWKETPEAHVFKVDLP-GL-TKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENG  121 (156)
Q Consensus        44 ~~~~~p~~di~e~~~~~~i~~~lP-G~-~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~v  121 (156)
                      .+...|.+.++++.+...|.+.|| |+ +++++.|.+.. +.|.|+.+..     .+.          .+.-...|...|
T Consensus        15 nG~~~~~y~W~Qt~~~V~i~I~lp~~~~~~kdv~V~i~~-~~l~v~~~~~-----~~~----------~~~~~~~L~~~I   78 (124)
T 1wgv_A           15 NGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSS-SSIRVAMLEE-----NGE----------RVLMEGKLTHKI   78 (124)
T ss_dssp             SSBCCSSCEEEEETTEEEEEEECCTTCCSGGGEEEEECS-SEEEEEEECS-----SSE----------EEEEEEEBSSCB
T ss_pred             CCCcCCcEEEEEcccEEEEEEEcCCCCCchhheEEEEEc-CEEEEEEEcc-----CCC----------ceEEcccccCcC
Confidence            344458899999999999999999 87 89999999997 5899986531     111          122446899999


Q ss_pred             ccCceEEEEeCCE-EEEEEeccCC
Q 043288          122 KIDQVRASIEDGV-LTVTVPKEEV  144 (156)
Q Consensus       122 d~~~i~A~~~nGv-L~I~lPK~~~  144 (156)
                      +++.-.-.++++. |.|+|-|+..
T Consensus        79 ~~e~S~w~i~~~k~v~i~L~K~~~  102 (124)
T 1wgv_A           79 NTESSLWSLEPGKCVLVNLSKVGE  102 (124)
T ss_dssp             CTTTCEEEECTTSEEEEEECBSSS
T ss_pred             CCcCCEEEEeCCCEEEEEEEECCC
Confidence            9999999998875 9999999854

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A

Probab=97.83  E-value=0.00035  Score=48.16  Aligned_cols=86  Identities=21%  Similarity=0.254  Sum_probs=67.8

Q ss_pred             CCCCcccccceeEEEECCCeEEEEEEcC-C--CCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEE
Q 043288           40 PRETSAIVNTRMDWKETPEAHVFKVDLP-G--LTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFR  116 (156)
Q Consensus        40 ~~~~~~~~~p~~di~e~~~~~~i~~~lP-G--~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~  116 (156)
                      |....+...|.+.+.++.+.+.|.+.|| |  ++.+++.|.+.. +.|.|..+-.        .          +.-...
T Consensus         8 p~~~nG~~~~~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~~-~~l~v~~kg~--------~----------~~~~g~   68 (121)
T 3qor_A            8 PNLGNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQR-RHLRVGLKGQ--------P----------AIIDGE   68 (121)
T ss_dssp             CCTTSSCBCSSCEEEECSSEEEEEEECCCSSCCCGGGEEEEEET-TEEEEEETTS--------C----------CSEEEE
T ss_pred             CcCCCCCcCCCEEEEEccceEEEEEECCCCCcccccceEEEEEc-CEEEEEEcCc--------c----------eEEecc
Confidence            3344455568899999999999999999 5  789999999998 5888864310        0          112457


Q ss_pred             CCCCCccCceEEEEeCC-EEEEEEeccCC
Q 043288          117 LPENGKIDQVRASIEDG-VLTVTVPKEEV  144 (156)
Q Consensus       117 lP~~vd~~~i~A~~~nG-vL~I~lPK~~~  144 (156)
                      |...|+++...-.+++| .|.|+|-|...
T Consensus        69 L~~~I~~deS~w~i~~~~~i~i~L~K~~~   97 (121)
T 3qor_A           69 LYNEVKVEESSWLIADGAVVTVHLEKINK   97 (121)
T ss_dssp             BSSCBCGGGCEEEEETTTEEEEEEEBSSS
T ss_pred             ccccccccccEEEEcCCCEEEEEEEECCC
Confidence            88999999989999988 99999999864

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2

Probab=97.79  E-value=0.00018  Score=49.88  Aligned_cols=79  Identities=15%  Similarity=0.177  Sum_probs=65.5

Q ss_pred             ceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEE
Q 043288           49 TRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRA  128 (156)
Q Consensus        49 p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A  128 (156)
                      |.++++++.+.+.|.+.+|+.  +++.|.+.. +.|.+++.....    +          ..|.-.+.|-..|+++..+.
T Consensus         4 ~~~~W~Qt~~~V~ltI~~~~~--~~~~V~~~~-~~l~~~~~~~~~----~----------~~y~~~l~L~~~I~~e~S~~   66 (125)
T 1ejf_A            4 ASAKWYDRRDYVFIEFCVEDS--KDVNVNFEK-SKLTFSCLGGSD----N----------FKHLNEIDLFHCIDPNDSKH   66 (125)
T ss_dssp             CCEEEEECSSEEEEEECCTTE--EEEEEEEET-TEEEEEEEETTT----T----------EEEEEEEEBSSCEEEEEEEE
T ss_pred             CceeEEeCCCEEEEEEEecCC--CceEEEEEC-CEEEEEEEeCCC----C----------ceEEEEEEccceeccccCEE
Confidence            379999999999999999995  689999997 589998764211    1          13667789999999999998


Q ss_pred             EEeCCEEEEEEeccCC
Q 043288          129 SIEDGVLTVTVPKEEV  144 (156)
Q Consensus       129 ~~~nGvL~I~lPK~~~  144 (156)
                      +..++.+.|+|.|+.+
T Consensus        67 ~v~~~kiei~L~K~~~   82 (125)
T 1ejf_A           67 KRTDRSILCCLRKGES   82 (125)
T ss_dssp             EECSSCEEEEEEESST
T ss_pred             EECCCEEEEEEEECCC
Confidence            8888899999999864

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4

Probab=97.66  E-value=0.00036  Score=48.68  Aligned_cols=79  Identities=24%  Similarity=0.302  Sum_probs=64.1

Q ss_pred             ccceeEEEECCCeEEEEEEcC-C--CCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCcc
Q 043288           47 VNTRMDWKETPEAHVFKVDLP-G--LTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKI  123 (156)
Q Consensus        47 ~~p~~di~e~~~~~~i~~~lP-G--~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~  123 (156)
                      ..|.+.++++.+...|.+.|| |  ++++++.|.+.. +.|.|+.+..        .          ..-...|...|++
T Consensus         6 ~~~~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~~-~~l~v~~kg~--------~----------~~~~~~L~~~I~~   66 (131)
T 1wfi_A            6 SGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQR-RHLRVGLKGQ--------P----------PVVDGELYNEVKV   66 (131)
T ss_dssp             SCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEET-TEEEEEETTS--------C----------CSBCSCBSSCBCS
T ss_pred             CCCcEEEEecCCEEEEEEECCCCCcccccceEEEEeC-CEEEEEECCc--------e----------EEEeccccccccc
Confidence            357899999999999999999 6  899999999997 5899985310        0          0112467888999


Q ss_pred             CceEEEEeCC-EEEEEEeccCC
Q 043288          124 DQVRASIEDG-VLTVTVPKEEV  144 (156)
Q Consensus       124 ~~i~A~~~nG-vL~I~lPK~~~  144 (156)
                      +...-.+++| .|.|+|-|..+
T Consensus        67 e~s~w~i~~~k~v~i~L~K~~~   88 (131)
T 1wfi_A           67 EESSWLIEDGKVVTVHLEKINK   88 (131)
T ss_dssp             TTCEEEEETTTEEEEEEEBSSS
T ss_pred             ccCEEEEcCCCEEEEEEEECCC
Confidence            9989899888 89999999864

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}

Probab=97.56  E-value=0.00084  Score=46.80  Aligned_cols=76  Identities=12%  Similarity=0.225  Sum_probs=61.4

Q ss_pred             cceeEEEECCCeEEEEEEcC-CCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCce
Q 043288           48 NTRMDWKETPEAHVFKVDLP-GLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQV  126 (156)
Q Consensus        48 ~p~~di~e~~~~~~i~~~lP-G~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i  126 (156)
                      .|.+.++++.+.+.|.+.|| |++++++.|.+.. +.|.|++.        +.          . .-...|...|+++..
T Consensus         4 ~~~y~W~Qt~~~V~i~I~lp~~~~~kdv~V~i~~-~~l~v~~~--------g~----------~-~~~~~L~~~I~~e~S   63 (131)
T 2o30_A            4 EAKYTWDQELNEINIQFPVTGDADSSAIKIRMVG-KKICVKNQ--------GE----------I-VIDGELLHEVDVSSL   63 (131)
T ss_dssp             -CCCEEEEETTEEEEEEECC---CCSCEEEEEET-TEEEEEET--------TE----------E-EEEEEBSSCEEEEEE
T ss_pred             CCcEEEEecCCEEEEEEECCCCCCccceEEEEEC-CEEEEEEC--------CE----------e-eEccccccccccccC
Confidence            47899999999999999996 8999999999997 58999852        10          1 234678899999988


Q ss_pred             EEEEeCCEEEEEEeccC
Q 043288          127 RASIEDGVLTVTVPKEE  143 (156)
Q Consensus       127 ~A~~~nGvL~I~lPK~~  143 (156)
                      .-.+.++.|.|+|-|..
T Consensus        64 ~w~i~~~kv~i~L~K~~   80 (131)
T 2o30_A           64 WWVINGDVVDVNVTKKR   80 (131)
T ss_dssp             EEEEETTEEEEEEEESS
T ss_pred             EEEEeCCEEEEEEEECC
Confidence            88899999999999983

>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=97.49  E-value=0.00032  Score=50.29  Aligned_cols=78  Identities=18%  Similarity=0.304  Sum_probs=63.8

Q ss_pred             cceeEEEECCCeEEEEEEcCCCCCCCeEEEEe-CCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCce
Q 043288           48 NTRMDWKETPEAHVFKVDLPGLTKEDVKLEIE-DHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQV  126 (156)
Q Consensus        48 ~p~~di~e~~~~~~i~~~lPG~~~edi~v~v~-~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i  126 (156)
                      .|.++++++.+.++|.|.++++  +++.|.+. . +.|.+++. ..    .+          ..|.-.+.|=..|+++ .
T Consensus         4 ~P~~~W~Qt~~~V~ltI~l~~~--~~v~V~~~~~-~~l~~~~~-~~----~~----------~~y~~~l~L~~~Idpe-S   64 (150)
T 2kmw_A            4 NPEVLWAQRSDKVYLTVALPDA--KDISVKCEPQ-GLFSFSAL-GA----QG----------ERFEFSLELYGKIMTE-Y   64 (150)
T ss_dssp             CCCEEEEECSSEEEEEECCSSE--EEEEECCCTT-EEEEEEEE-TT----TT----------EEEEEEEEBSSCEEEE-E
T ss_pred             CCcEEEEeCCCEEEEEEEeCCC--CceEEEEecC-CEEEEEEE-cC----CC----------ceEEEEeEhhhccccc-c
Confidence            5889999999999999999997  47888888 6 58999986 11    11          1366778898999999 8


Q ss_pred             EEEEeCCEEEEEEeccCC
Q 043288          127 RASIEDGVLTVTVPKEEV  144 (156)
Q Consensus       127 ~A~~~nGvL~I~lPK~~~  144 (156)
                      +.+.....+.|+|.|+.+
T Consensus        65 ~~~v~~~kIei~L~K~e~   82 (150)
T 2kmw_A           65 RKNVGLRNIIFSIQKEER   82 (150)
T ss_dssp             EEEEESSSEEEEEEECCS
T ss_pred             eEEecCCEEEEEEEECCC
Confidence            888888889999999764

>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}

Probab=97.31  E-value=0.0038  Score=44.88  Aligned_cols=78  Identities=17%  Similarity=0.300  Sum_probs=64.5

Q ss_pred             ccceeEEEECCCeEEEEEEcC-CCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCc
Q 043288           47 VNTRMDWKETPEAHVFKVDLP-GLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQ  125 (156)
Q Consensus        47 ~~p~~di~e~~~~~~i~~~lP-G~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~  125 (156)
                      ..|.+.++++.+.+.|.|.|| |+..++|.|.+.. +.|.|+.+        +.          .+ -...|...|+++.
T Consensus        12 ~~~~y~W~Qt~~eV~v~I~lp~~~~~kdv~V~i~~-~~L~v~~k--------g~----------~~-l~g~L~~~I~~ee   71 (157)
T 2rh0_A           12 GTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQS-RHVALAVG--------GR----------EI-LKGKLFDSTIADE   71 (157)
T ss_dssp             ECSSEEEEECSSEEEEEEECCTTCCGGGEEEEECS-SEEEEEET--------TE----------EE-EEEEBSSCBCGGG
T ss_pred             CCCcEEEEecCCEEEEEEECCCCCcccceEEEEec-CEEEEEEC--------CE----------EE-EeeccccccCccc
Confidence            357899999999999999998 8999999999997 58999853        10          01 3467889999999


Q ss_pred             eEEEEeCCE-EEEEEeccCC
Q 043288          126 VRASIEDGV-LTVTVPKEEV  144 (156)
Q Consensus       126 i~A~~~nGv-L~I~lPK~~~  144 (156)
                      -.-.+.++. |.|+|-|+..
T Consensus        72 S~w~i~~~k~v~I~L~K~~~   91 (157)
T 2rh0_A           72 GTWTLEDRKMVRIVLTKTKR   91 (157)
T ss_dssp             CEEEEECCCEEEEEEEBSSC
T ss_pred             cEEEEcCCcEEEEEEEEcCC
Confidence            999998874 9999999864

>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}

Probab=97.29  E-value=0.00013  Score=51.25  Aligned_cols=84  Identities=13%  Similarity=0.256  Sum_probs=59.2

Q ss_pred             cceeEEEECCCe-------EEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCC
Q 043288           48 NTRMDWKETPEA-------HVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPEN  120 (156)
Q Consensus        48 ~p~~di~e~~~~-------~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~  120 (156)
                      .|.+.++++.+.       ++|.|.+|++.  ++.|.+.. +.|.+++..........         ...|.-.+.|...
T Consensus         6 ~p~~~W~Q~~~~~~~~k~~V~ltI~~~~~~--~~~V~~~~-~~l~~~~~~~~~~g~~~---------~~~y~~~l~L~~~   73 (134)
T 2cg9_X            6 NPQVAWAQRSSTTDPERNYVLITVSIADCD--APELTIKP-SYIELKAQSKPHVGDEN---------VHHYQLHIDLYKE   73 (134)
T ss_dssp             -----CBCCCEEECCCSSEEEEECCCSSEE--SCCCCBCS-SEEEECCEEC----------------CEEBCEEEECSSC
T ss_pred             CCCEEEEeCCCCcCCcCCEEEEEEEecCCC--ceEEEEEC-CEEEEEEecccccCCcc---------CceEEEEEEChhh
Confidence            477889888877       99999999974  78888887 58999876421000000         0136677899999


Q ss_pred             CccCceEEEEeCCE-EEEEEeccC
Q 043288          121 GKIDQVRASIEDGV-LTVTVPKEE  143 (156)
Q Consensus       121 vd~~~i~A~~~nGv-L~I~lPK~~  143 (156)
                      |+++..+.++.++. |.|+|.|+.
T Consensus        74 Idpe~S~~~v~~~~~vei~L~K~~   97 (134)
T 2cg9_X           74 IIPEKTMHKVANGQHYFLKLYKKD   97 (134)
T ss_dssp             CCSSSEEEEECCC--CEEEEEECS
T ss_pred             ccccccEEEECCCEEEEEEEEECC
Confidence            99999999999888 999999987

>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}

Probab=85.16  E-value=4.7  Score=25.99  Aligned_cols=33  Identities=12%  Similarity=0.161  Sum_probs=27.1

Q ss_pred             EEEEEEcC-CCCCCCeEEEEeCCcEEEEEEEEecc
Q 043288           60 HVFKVDLP-GLTKEDVKLEIEDHRVLQITADRNVE   93 (156)
Q Consensus        60 ~~i~~~lP-G~~~edi~v~v~~g~~L~I~g~~~~~   93 (156)
                      |.-.+.|| +++.+.++-++++| +|+|+.-+...
T Consensus        63 f~R~~~LP~~vd~~~i~A~~~~G-vL~I~lpK~~~   96 (102)
T 4fei_A           63 FVRELAFPEPVRPASGVASLAGG-VLTVRFEKLRP   96 (102)
T ss_dssp             EEEEEECSSCBCTTCCEEEEETT-EEEEEEEBSSC
T ss_pred             EEEEEECCCCcchhHcEEEEECC-EEEEEEEccCc
Confidence            44467899 69999999999997 99999877553

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A

Probab=85.11  E-value=2.2  Score=26.76  Aligned_cols=33  Identities=15%  Similarity=0.254  Sum_probs=29.1

Q ss_pred             EEEEEEECCCCCccCceEEEEeCCEEEEEEeccC
Q 043288          110 KFLRRFRLPENGKIDQVRASIEDGVLTVTVPKEE  143 (156)
Q Consensus       110 ~f~r~i~lP~~vd~~~i~A~~~nGvL~I~lPK~~  143 (156)
                      .|.-.+.|| +++.+.|+..+++|.|+|..-+..
T Consensus         8 ~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~   40 (85)
T 3q9p_A            8 RWRVSLDVN-HFAPDELTVKTKDGVVEITGKHAA   40 (85)
T ss_dssp             EEEEEEECT-TTCCSEEEEEEETTEEEEEEEEC-
T ss_pred             EEEEEEECC-CCChHHEEEEEECCEEEEEEEEcc
Confidence            478889999 899999999999999999997654

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A

Probab=80.62  E-value=3.6  Score=26.33  Aligned_cols=32  Identities=16%  Similarity=0.258  Sum_probs=27.3

Q ss_pred             eEEEEEEcC-CCCCCCeEEEEeCCcEEEEEEEEe
Q 043288           59 AHVFKVDLP-GLTKEDVKLEIEDHRVLQITADRN   91 (156)
Q Consensus        59 ~~~i~~~lP-G~~~edi~v~v~~g~~L~I~g~~~   91 (156)
                      .|.-.+.|| +++.+.++-++.+| +|+|+.-+.
T Consensus        65 ~f~r~~~LP~~vd~~~i~A~~~~G-vL~I~~pK~   97 (100)
T 3gla_A           65 SFHRRFALPDSADADGITAAGRNG-VLEIRIPKR   97 (100)
T ss_dssp             EEEEEEECCTTBCTTSCEEEEETT-EEEEEEEBC
T ss_pred             EEEEEEECCCCcChHHeEEEEeCC-EEEEEEecC
Confidence            577788999 58999999999997 999997654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	156
d1gmea_	150	b.15.1.1 (A:) Small heat shock protein {Wheat (Tri	7e-38
d1shsa_	115	b.15.1.1 (A:) Small heat shock protein {Archaeon M	1e-21

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 150

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  124 bits (312), Expect = 7e-38
 Identities = 86/146 (58%), Positives = 110/146 (75%), Gaps = 1/146 (0%)

Query: 12  RDSILDPFSFDVWNPFKDFA-FPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLPGLT 70
           R ++ DPF+    +PF  F       S    ET+A  N RMDWKETPEAHVFK DLPG+ 
Sbjct: 5   RSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVK 64

Query: 71  KEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASI 130
           KE+VK+E+ED  VL ++ +R  E+EDKN+ WHRVERS GKF+RRFRL E+ K+++V+A +
Sbjct: 65  KEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGL 124

Query: 131 EDGVLTVTVPKEEVKKPELKAIEISG 156
           E+GVLTVTVPK EVKKPE+KAI+ISG
Sbjct: 125 ENGVLTVTVPKAEVKKPEVKAIQISG 150

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 82.4 bits (203), Expect = 1e-21
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 2/104 (1%)

Query: 51  MDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGK 110
           +   E  +       LPG+ KED+ L      +        +   +     +       +
Sbjct: 13  ISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEE 72

Query: 111 FLRRFRLPENGKIDQVRASIEDGVLTVTVPKEEVKKPELKAIEI 154
             R  +LP   K +   A  E+GVL+V +PK E      K I I
Sbjct: 73  IYRTIKLPATVKEENASAKFENGVLSVILPKAESSIK--KGINI 114

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	156
d1gmea_	150	Small heat shock protein {Wheat (Triticum aestivum	100.0
d1shsa_	115	Small heat shock protein {Archaeon Methanococcus j	99.94
d1rl1a_	92	Suppressor of G2 allele of skp1 homolog, gst1 {Hum	98.53
d1ejfa_	110	Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960	97.75
d1wh0a_	134	Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H	97.4
d1wgva_	124	NudC domain containing protein 3, NUDCD3 (KIAA1068	97.24
d1wfia_	131	Nuclear migration protein nudC {Mouse (Mus musculu	97.06
d1rl6a1	75	Ribosomal protein L6 {Bacillus stearothermophilus	80.49

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=100.00  E-value=1.7e-34  Score=208.46  Aligned_cols=146  Identities=59%  Similarity=0.946  Sum_probs=119.7

Q ss_pred             CCCCCCCCCCCCccCccCCCCC-CCCCCCCCCCCcccccceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEE
Q 043288           11 QRDSILDPFSFDVWNPFKDFAF-PSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITAD   89 (156)
Q Consensus        11 ~~~~~~~pf~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~   89 (156)
                      |+++.||||+.-+.|+|..+.. ..............+.|+++|.|++++|+|+++|||++++||+|++++|+.|+|+|+
T Consensus         4 rr~~~fDpF~d~~~d~f~~~~~~~~~~~~~~~~~~~~~~p~~dv~e~~~~~~i~~~lPG~~~edi~v~v~~~~~l~i~~~   83 (150)
T d1gmea_           4 RRSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGE   83 (150)
T ss_dssp             CSCCCBCTTCGGGSSHHHHHHHHGGGTTSSCCSHHHHGGGCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEEC
T ss_pred             ccCCCcCCchhhhhchhhhhhhhhhccccccccccccCCCceeEEECCCEEEEEEEeCCCccCCEEEEEEEccceeEEEE
Confidence            4568899997422355544311 111111122334455799999999999999999999999999999987678999999


Q ss_pred             EeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEeCCEEEEEEeccCCCCCCeeEEecCC
Q 043288           90 RNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGVLTVTVPKEEVKKPELKAIEISG  156 (156)
Q Consensus        90 ~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~nGvL~I~lPK~~~~~~~~~~I~I~~  156 (156)
                      +..+...++..|+.+|+.+|.|+|+|.||.+||.++|+|+|+||+|+|++||.++++++.++|+|+|
T Consensus        84 ~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~lpK~~~~~~~~~~I~I~g  150 (150)
T d1gmea_          84 RTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG  150 (150)
T ss_dssp             CCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEEEEETTEEEEEEECCCCCTTCCCCCCCCC
T ss_pred             EecccccccceeeeeeeccceEEEEEECCCCeeeceeEEEEECCEEEEEEEcCCcCCCCceEEeccC
Confidence            8888777788999999999999999999999999999999999999999999988888889999986

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.94  E-value=7.9e-27  Score=160.83  Aligned_cols=108  Identities=27%  Similarity=0.295  Sum_probs=93.0

Q ss_pred             ccccceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCc-cEEEEeeeceEEEEEEECCCCCcc
Q 043288           45 AIVNTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNE-TWHRVERSRGKFLRRFRLPENGKI  123 (156)
Q Consensus        45 ~~~~p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~-~~~~~e~~~~~f~r~i~lP~~vd~  123 (156)
                      +...+|+||+|++++|.|.++|||+++++|+|++++ +.|+|+|++......+.. .++..++..|.|+|+|.||..+|.
T Consensus         7 ~~~~~pvdi~e~~~~~~i~~~lPG~~~edi~v~v~~-~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~   85 (115)
T d1shsa_           7 GKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVG-DTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKE   85 (115)
T ss_dssp             EESCCCEEEEECSSEEEEEEECTTCCGGGEEEEEET-TEEEEEEECCCCCCCTTCEEEEECSCCCCEEEEEEECSSCBCG
T ss_pred             CCCcCceEEEEcCCEEEEEEECCCCCHHHEEEEEEC-CEEEEEEEeccccccccccEEEEeeecccceEEEEecCCceee
Confidence            334577999999999999999999999999999998 599999998776554444 444556788999999999999999


Q ss_pred             CceEEEEeCCEEEEEEeccCCCCCCeeEEecC
Q 043288          124 DQVRASIEDGVLTVTVPKEEVKKPELKAIEIS  155 (156)
Q Consensus       124 ~~i~A~~~nGvL~I~lPK~~~~~~~~~~I~I~  155 (156)
                      ++++|.|+||+|+|++||.....  .++|+|+
T Consensus        86 ~~i~A~~~nGvL~I~lpK~~~~~--~~~I~Ie  115 (115)
T d1shsa_          86 ENASAKFENGVLSVILPKAESSI--KKGINIE  115 (115)
T ss_dssp             GGCEEEEETTEEEEEEEBCGGGC--CEECCCC
T ss_pred             cceEEEEECCEEEEEEEeCCCCC--CceeeeC
Confidence            99999999999999999987544  4888886

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=3.4e-07  Score=58.65  Aligned_cols=81  Identities=17%  Similarity=0.272  Sum_probs=68.2

Q ss_pred             cceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceE
Q 043288           48 NTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVR  127 (156)
Q Consensus        48 ~p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~  127 (156)
                      ..+.+++++++...|.+.+||+.++++.|.+.+ +.|.++.....     +.          .|.-.+.|...|+++..+
T Consensus         2 k~ry~W~Qt~~~V~i~i~~~~~~~~~v~v~~~~-~~l~v~~~~~~-----~~----------~y~~~~~L~~~I~p~~s~   65 (92)
T d1rl1a_           2 KIKYDWYQTESQVVITLMIKNVQKNDVNVEFSE-KELSALVKLPS-----GE----------DYNLKLELLHPIIPEQST   65 (92)
T ss_dssp             CCCEEEEECSSEEEEEECCCSCCGGGEEEECSS-SCEEEEEECTT-----SS----------EEEEEECBSSCCCGGGEE
T ss_pred             CCceeEEeCCCEEEEEEEeCCCChHheEEEEec-CEEEEEEEcCC-----Cc----------EEEEEEEcCcccCchhcE
Confidence            357899999999999999999999999999997 58888865311     11          366678899999999999


Q ss_pred             EEEeCCEEEEEEeccCC
Q 043288          128 ASIEDGVLTVTVPKEEV  144 (156)
Q Consensus       128 A~~~nGvL~I~lPK~~~  144 (156)
                      ..+.++.|.|+|-|+++
T Consensus        66 ~~~~~~kiei~L~K~~~   82 (92)
T d1rl1a_          66 FKVLSTKIEIKLKKPEA   82 (92)
T ss_dssp             EEECSSSEEEEEECSSC
T ss_pred             EEEeCCEEEEEEEECCC
Confidence            99999999999999864

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=0.00013  Score=47.68  Aligned_cols=80  Identities=14%  Similarity=0.156  Sum_probs=64.6

Q ss_pred             ceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEE
Q 043288           49 TRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRA  128 (156)
Q Consensus        49 p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A  128 (156)
                      |++.++++.+...|.+.+|+.  .+++|.++. +.+.+++......              ..|.-.+.|...|+++..+.
T Consensus         4 ~~~~W~Qt~~~V~i~I~v~~~--~~~~v~i~~-~~l~~~~~~~~~~--------------~~y~l~~~L~~~I~~~~s~~   66 (110)
T d1ejfa_           4 ASAKWYDRRDYVFIEFCVEDS--KDVNVNFEK-SKLTFSCLGGSDN--------------FKHLNEIDLFHCIDPNDSKH   66 (110)
T ss_dssp             CCEEEEECSSEEEEEECCTTE--EEEEEEEET-TEEEEEEEETTTT--------------EEEEEEEEBSSCEEEEEEEE
T ss_pred             CCcEEEECCCEEEEEEEeCCC--CCceEEEEe-ceEEEEEEecCCC--------------ceEEEEEEcccCcccCccEE
Confidence            568999999999999999985  567788886 4788887643221              13566788999999999999


Q ss_pred             EEeCCEEEEEEeccCCC
Q 043288          129 SIEDGVLTVTVPKEEVK  145 (156)
Q Consensus       129 ~~~nGvL~I~lPK~~~~  145 (156)
                      .+.++-|.|+|-|+.+.
T Consensus        67 ~v~~~kiei~L~K~~~~   83 (110)
T d1ejfa_          67 KRTDRSILCCLRKGESG   83 (110)
T ss_dssp             EECSSCEEEEEEESSTT
T ss_pred             EEeCCEEEEEEEEcCCC
Confidence            99999999999998653

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00095  Score=45.21  Aligned_cols=93  Identities=10%  Similarity=0.076  Sum_probs=69.5

Q ss_pred             cceeEEEECC-CeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCce
Q 043288           48 NTRMDWKETP-EAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQV  126 (156)
Q Consensus        48 ~p~~di~e~~-~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i  126 (156)
                      ..+-++++++ +...|.+.+.|+.++++.|.+.+ +.|.|+-.......-   .....-.....|...+.|-..|+++..
T Consensus        19 ~ir~dwyq~~~~~V~VtI~~K~v~ke~~~V~f~~-~sl~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~~~I~pe~S   94 (134)
T d1wh0a_          19 FVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFRE-QDFTLIFQTRDGNFL---RLHPGCGPHTTFRWQVKLRNLIEPEQC   94 (134)
T ss_dssp             CCCEEEEEETTTEEEEEEECCSBCTTSCEEEECS-SEEEEEECBCCHHHH---HHSTTCCTTSCEEEEEEBSSCEEEEEE
T ss_pred             ccccceeecCCCEEEEEEEeCCCchhheEEEEeC-CEEEEEEECCCCcce---eeccccCcCeeEEEeeecccccChhHc
Confidence            4567899985 79999999999999999999998 589988643221000   000000001248888999999999999


Q ss_pred             EEEEeCCEEEEEEeccCC
Q 043288          127 RASIEDGVLTVTVPKEEV  144 (156)
Q Consensus       127 ~A~~~nGvL~I~lPK~~~  144 (156)
                      +.+...+.+.|+|-|+.+
T Consensus        95 ~~~v~~~kiei~L~K~~~  112 (134)
T d1wh0a_          95 TFCFTASRIDICLRKRQS  112 (134)
T ss_dssp             EEEECSSEEEEEEEESSS
T ss_pred             EEEeCCCEEEEEEEeCCC
Confidence            999999999999999765

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.0037  Score=41.23  Aligned_cols=81  Identities=16%  Similarity=0.255  Sum_probs=59.5

Q ss_pred             ccceeEEEECCCeEEEEEEcC-C-CCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccC
Q 043288           47 VNTRMDWKETPEAHVFKVDLP-G-LTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKID  124 (156)
Q Consensus        47 ~~p~~di~e~~~~~~i~~~lP-G-~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~  124 (156)
                      ..+.+.+.++.+.+.|.+.|| | .+.++|.|.+.. +.|.|+-.....     .          .+.-...|...|+++
T Consensus        18 ~~~~Y~W~Qt~~~V~i~i~lp~~~~k~kdv~v~~~~-~~l~v~v~~~~~-----~----------~~~l~g~L~~~I~~d   81 (124)
T d1wgva_          18 VRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSS-SSIRVAMLEENG-----E----------RVLMEGKLTHKINTE   81 (124)
T ss_dssp             CCSSCEEEEETTEEEEEEECCTTCCSGGGEEEEECS-SEEEEEEECSSS-----E----------EEEEEEEBSSCBCTT
T ss_pred             CCCCeEEEeECCEEEEEEEeCCCCcchhhEEEEEEe-CEEEEEEeccCC-----c----------ceEEeCcccCccccc
Confidence            456899999999999999998 4 356899999997 578887442111     1          133346799999999


Q ss_pred             ceEEEEeCCE-EEEEEeccC
Q 043288          125 QVRASIEDGV-LTVTVPKEE  143 (156)
Q Consensus       125 ~i~A~~~nGv-L~I~lPK~~  143 (156)
                      ...-.++++. |.+.+.|..
T Consensus        82 eS~w~i~~~~~~i~~lkK~~  101 (124)
T d1wgva_          82 SSLWSLEPGKCVLVNLSKVG  101 (124)
T ss_dssp             TCEEEECTTSEEEEEECBSS
T ss_pred             ccEEEEeCCCEEEEEEEecC
Confidence            9898998775 555555544

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.06  E-value=0.0048  Score=41.26  Aligned_cols=81  Identities=23%  Similarity=0.282  Sum_probs=60.6

Q ss_pred             ccccceeEEEECCCeEEEEEEcC---CCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCC
Q 043288           45 AIVNTRMDWKETPEAHVFKVDLP---GLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENG  121 (156)
Q Consensus        45 ~~~~p~~di~e~~~~~~i~~~lP---G~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~v  121 (156)
                      +...|.+.+.++.+...|.|.+|   ++++++|.|.+.. +.|.|..+...       .+         +  .-.|...|
T Consensus         4 G~~~~~Y~W~Qt~~eV~I~V~~~~~~~~~~~di~v~i~~-~~l~v~v~~~~-------~l---------l--~g~L~~~I   64 (131)
T d1wfia_           4 GSSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQR-RHLRVGLKGQP-------PV---------V--DGELYNEV   64 (131)
T ss_dssp             SSSCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEET-TEEEEEETTSC-------CS---------B--CSCBSSCB
T ss_pred             CCCCCCeEEEeeCCEEEEEEEcCCCCCcchhhEEEEeeC-CEEEEEEcCCc-------ee---------e--cccccCcc
Confidence            34468999999999998888764   7899999999998 58888743210       00         0  11577789


Q ss_pred             ccCceEEEEeCC-EEEEEEeccCC
Q 043288          122 KIDQVRASIEDG-VLTVTVPKEEV  144 (156)
Q Consensus       122 d~~~i~A~~~nG-vL~I~lPK~~~  144 (156)
                      +++...-.+++| +|.|+|-|+..
T Consensus        65 ~~des~W~ied~~~l~i~L~K~~~   88 (131)
T d1wfia_          65 KVEESSWLIEDGKVVTVHLEKINK   88 (131)
T ss_dssp             CSTTCEEEEETTTEEEEEEEBSSS
T ss_pred             cccccEEEEeCCCEEEEEEEECCC
Confidence            998877788765 89999999754

>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.49  E-value=2.9  Score=24.26  Aligned_cols=43  Identities=16%  Similarity=0.368  Sum_probs=31.0

Q ss_pred             CCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEeCCEEEEEE
Q 043288           71 KEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGVLTVTV  139 (156)
Q Consensus        71 ~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~nGvL~I~l  139 (156)
                      |+.++|++++ +.|+|+|.+                  |..  .+.||..     |+...+++.|.|..
T Consensus         5 P~gV~v~i~~-~~i~vkGpk------------------G~L--~~~~~~~-----v~i~~~~~~i~v~~   47 (75)
T d1rl6a1           5 PAGVTVTVNG-NTVTVKGPK------------------GEL--TRTFHPD-----MTITVEGNVITVTR   47 (75)
T ss_dssp             CTTCEEEEET-TEEEEEETT------------------EEE--EEECCTT-----CEEEEETTEEEEEC
T ss_pred             CCCcEEEEEC-CEEEEEeCC------------------EEE--EEeccCc-----EEEEEeCceEEEcc
Confidence            5789999997 699999764                  333  3455644     45568999998874