Citrus Sinensis ID: 043301

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
MEKQFERDKLKHTSHMHYLIFNENEVGHDDVVIICDICETSLQGPAYGCGTCEFSIHKSCAELPLKIDHPFHCHPLTLSKTNHHRCDACLDECSGMAYRCHECCYNLHYHCTALKPSINFKELKCVLHEVMQSLLEKQPQDVELRTIQERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVLVNVM
Secondary Structure (PSIPRED)
cccccccccEEEcccccccEEcccccccccccccccccccccccccEEEccccccccHHHcccccccccccccccccccccccccccccccccccEEEEEccccEEEEccccccccccccccccccHHHHHHHHcccccccccccccccccccccEEEEEccccccccccccccccccHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEEEcccccccccccEEccccccccccEEEEEcccEEEcHHHcccccccccccccccEEEEcccccEEcccccccccEEEEEccccEEEEEEcccccccccccccccccccccEEEccccccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHccHEEccccEEEccccccccEEEEEEEcccccHHHHHHHHHHHccccccccccccccHcHEEEEcc
Coil and Loop (DISEMBL)
mekqferdklkhtsHMHYLIFnenevghddVVIICDIcetslqgpaygcgtcefsihkscaelplkidhpfhchpltlsktnhhrcdacldecsgmayrcheccynlhyhctalkpsinfkeLKCVLHEVMQSLLEKQPQDVELRTiqernpedltfhdvfssftekdrnqlddITENIESEIAGIKKTlsetgdqgskvtisesypysddTLAQFILRLQNSlrsknmsvefwdldDVLVNVM
Flexible Loop (DISEMBL)
mekqferdklkhtsHMHYLIFNENEVGHDDVVIICDICETSLQGPAYGCGTCEFSIHKSCAELPLKIDHPFHCHPLTLSKTNHHRCDACLDECSGMAYRCHECCYNLHYHCTALKPSINFKELKCVLHEVMQSLLEKQPQDVELRTIqernpedltfhdvfssftekdrnqlddITENIESEIAGIkktlsetgdqgskvtisesypysDDTLAQFILRLQNSlrsknmsvefwdlddvLVNVM
Low Complexity Region (SEG)
MEKQFERDKLKHTSHMHYLIFNENEVGHDDVVIICDICETSLQGPAYGCGTCEFSIHKSCAELPLKIDHPFHCHPLTLSKTNHHRCDACLDECSGMAYRCHECCYNLHYHCTALKPSINFKELKCVLHEVMQSLLEKQPQDVELRTIQERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVLVNVM
Disordered region (IsUnstruct)
**************HMHYLIFNENEVGHDDVVIICDICETSLQGPAYGCGTCEFSIHKSCAELPLKIDHPFHCHPLTLSKTNHHRCDACLDECSGMAYRCHECCYNLHYHCTALKPSINFKELKCVLHEVMQSLL********************TFHDVF********************************************YPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVLV***
Disordered Region (DISOPRED)
*****ER*KLKHTSHMHYLIFNENEVGHDDVVIICDICETSLQGPAYGCGTCEFSIHKSCAELPLKIDHPFHCHPLTLSKTNHHRCDACLDECSGMAYRCHECCYNLHYHCTALKPSINFKELKCVLHEVMQSLLEKQPQDVELRTIQERNPEDLTFHDVFSSFTEKDRNQLDDITE**********************************TLAQF***********NMSVEFWDLDDVLVNV*
Disordered Region (DISEMBL)
**********KHTSHMHYLIFNENEVGHDDVVIICDICETSLQGPAYGCGTCEFSIHKSCAELPLKIDHPFHCHPLTLSKTNHHRCDACLDECSGMAYRCHECCYNLHYHCTALKPSINFKELKCVLHEVMQSLLEKQPQDVELRTIQERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKT*********KVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVLVNVM
Disordered Region (DISPRO)
****FERDKLKHTSHMHYLIFNENEVGHDDVVIICDICETSLQGPAYGCGTCEFSIHKSCAELPLKIDHPFHCHPLTLSKTNHHRCDACLDECSGMAYRCHECCYNLHYHCTALKPSINFKELKCVLHEVMQSLLEKQPQDVELRTIQERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQN*******SVEFWDLDDVLVNVM
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKQFERDKLKHTSHMHYLIFNENEVGHDDVVIICDICETSLQGPAYGCGTCEFSIHKSCAELPLKIDHPFHCHPLTLSKTNHHRCDACLDECSGMAYRCHECCYNLHYHCTALKPSINFKELKCVLHEVMQSLLEKQPQDVELRTIQERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVLVNVM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
Q6P5E8	934	Diacylglycerol kinase the	yes	no	0.372	0.097	0.288	3e-05

>sp|Q6P5E8|DGKQ_MOUSE Diacylglycerol kinase theta OS=Mus musculus GN=Dgkq PE=1 SV=1

 Score = 48.9 bits (115), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 41/111 (36%), Gaps = 20/111 (18%)

Query: 35  CDICETSLQGPAYGCGTCEFSIHKSCAELPLKIDHPFHCHPLTLS--KTNHH-------- 84
           C +C  SL+ PA+ C  CE  +H  C  +P        CH        T HH        
Sbjct: 129 CVVCRKSLEVPAFRCEVCELHVHPDC--VPFACSDCRQCHQDGQQDYDTYHHHWREGNLP 186

Query: 85  ---RCDACLDECSG----MAYRCHECCYNLHYHC-TALKPSINFKELKCVL 127
              RC+ C   C         RC  C    H  C TAL P   F  L+ ++
Sbjct: 187 SGARCEVCRKTCGSSDVLAGVRCEWCGVQAHSVCSTALAPECTFGRLRSMV 237

Phosphorylates diacylglycerol (DAG) to generate phosphatidic acid (PA). May regulate the activity of protein kinase C by controlling the balance between these two signaling lipids. Activated in the nucleus in response to alpha-thrombin and nerve growth factor (By similarity). May be involved in cAMP-induced activation of NR5A1 and subsequent steroidogenic gene transcription by delivering PA as ligand for NR5A1. Acts synergistically with NR5A1 on CYP17 transcriptional activity.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 1EC: 0EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
449460291	1296	PREDICTED: uncharacterized protein LOC10	0.532	0.100	0.335	3e-10
157679146	236	DC1 domain containing protein [Nicotiana	0.409	0.423	0.410	1e-09
224144656	740	predicted protein [Populus trichocarpa]	0.409	0.135	0.394	3e-09
449460289	829	PREDICTED: uncharacterized protein LOC10	0.442	0.130	0.393	5e-09
224137826	701	predicted protein [Populus trichocarpa]	0.409	0.142	0.413	6e-09
356572112	567	PREDICTED: uncharacterized protein LOC10	0.426	0.183	0.403	1e-08
224144591	838	predicted protein [Populus trichocarpa]	0.340	0.099	0.435	1e-08
15224871	247	cysteine/histidine-rich C1 domain-contai	0.905	0.894	0.271	1e-08
15226371	248	cysteine/histidine-rich C1 domain-contai	0.508	0.5	0.352	2e-08
224137818	455	predicted protein [Populus trichocarpa]	0.409	0.219	0.394	2e-08

>gi|449460291|ref|XP_004147879.1| PREDICTED: uncharacterized protein LOC101206551 [Cucumis sativus]

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 69/149 (46%), Gaps = 19/149 (12%)

Query: 10  LKHTSHMHYLIFNENEVGHDDVVIICDICETSLQGPAYGCGT--CEFSIHKSCAELPLKI 67
           L +  H H L FNE+    +  V  C  C   L+ PA+ C    C F IH+SC  LP +I
Sbjct: 5   LVNRPHQHPLFFNEDGRKINGEVAFCSRCRQPLRPPAFTCSNFDCNFHIHQSCLHLPPQI 64

Query: 68  DHPFH-CHPLTLSKTNHHRCDACLDECSGMAYRCHECCYNLHYHCTALKPSINFKELKCV 126
             PFH  HPL L +TN++ C  C    SG  YRC +C + +              ++KCV
Sbjct: 65  HSPFHPLHPLFL-ETNNYFCTVCWQMPSGDVYRCRKCNFQI--------------DIKCV 109

Query: 127 LHEVMQSLLEKQPQDVELRTIQERNPEDL 155
           L +   S L +   D + R     +P  L
Sbjct: 110 LTDTKSSGLRRISGD-QFRHFSHPHPLTL 137

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|157679146|dbj|BAF80452.1| DC1 domain containing protein [Nicotiana tabacum]

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 61/112 (54%), Gaps = 12/112 (10%)

Query: 10  LKHTSHMHYLIFNENEVGHDDVVIICDICETSLQGPAYGCG--TCEFSIHKSCAELPLKI 67
           +KH SH H L  +E +  ++   IIC  CE  L G +Y C    C+F++HKSC ELP KI
Sbjct: 1   MKHFSHPHALELSEVQETNE---IICSGCENKLSGISYKCTKPNCKFTLHKSCFELPRKI 57

Query: 68  DHPFHC-HPLTLSKTNHHR------CDACLDECSGMAYRCHECCYNLHYHCT 112
            H  H  HPLTL  +   R      C+AC +E     Y C EC ++LH +C 
Sbjct: 58  QHNSHPNHPLTLYPSLPERDSIYFGCNACGEEPKAFVYECLECNFSLHTNCA 109

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144656|ref|XP_002336168.1| predicted protein [Populus trichocarpa] gi|222874811|gb|EEF11942.1| predicted protein [Populus trichocarpa]

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 56/104 (53%), Gaps = 4/104 (3%)

Query: 17  HYLIFNENEVGHDDVVIICDICETSLQGPAYGCGTCEFSIHKSCAELPLKIDHPFHC-HP 75
           H LI NE +  H + V+ C +C+  + GP+Y C +C F +HK CAELP +I    H  HP
Sbjct: 132 HPLILNEEQEYHGEGVV-CSLCKEPMSGPSYSCTSCNFFLHKKCAELPPEIKRHIHPEHP 190

Query: 76  LTLSKTNHHRCDACLDE-CSGMAYRCHECCYNLHYHCTALKPSI 118
           L L   +H  CD C +  C    Y C  C +N+H  C A  P +
Sbjct: 191 LRLLPNHHTMCDFCNETCCESFVYCCFVCEFNIHIKC-AFPPCV 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460289|ref|XP_004147878.1| PREDICTED: uncharacterized protein LOC101206314 [Cucumis sativus]

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 60/117 (51%), Gaps = 9/117 (7%)

Query: 9   KLKHTSHMHYL--IFNENEVGHDDVVIICDICETSLQGPAYGCGTCEFSIHKSCAELPLK 66
           +++H  H H L    +E E+G D V   CD C   L GP+YGC  C+F +HK C ELP K
Sbjct: 371 EIQHFIHHHSLNLFSSEEELGQDRV---CDGCMKRLSGPSYGCEECDFFVHKECLELPRK 427

Query: 67  IDHPFHCHPLTLSKTNH--HRCDACLDECSGMAYRCHECCYNLHYHCTALKPSINFK 121
             +  H H L L    +   +C ACL   +G AY C  C       CT++K  I FK
Sbjct: 428 KRNFIHQHSLDLISIPNFVFQCQACLKYFNGFAYHCKTCLSTFDTRCTSIK--IPFK 482

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137826|ref|XP_002322661.1| predicted protein [Populus trichocarpa] gi|222867291|gb|EEF04422.1| predicted protein [Populus trichocarpa]

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 54/104 (51%), Gaps = 4/104 (3%)

Query: 17  HYLIFNENEVGHDDVVIICDICETSLQGPAYGCGTCEFSIHKSCAELPLKIDHPFHC-HP 75
           H LI NE +  H + V+ C +C+  + GP Y C +C F +HK CAELP K+    H  HP
Sbjct: 132 HPLILNEEQEYHGEGVV-CSVCKEPMSGPIYSCTSCNFFLHKKCAELPPKMKRHIHPEHP 190

Query: 76  LTLSKTNHHRCDACLDEC-SGMAYRCHECCYNLHYHCTALKPSI 118
           L L   +   CD C + C     Y C  C YNLH  C A  P I
Sbjct: 191 LRLLPNHDMICDFCNETCYESFVYFCIVCEYNLHIKC-AFPPCI 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572112|ref|XP_003554214.1| PREDICTED: uncharacterized protein LOC100810028 [Glycine max]

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 58/114 (50%), Gaps = 10/114 (8%)

Query: 14  SHMHYLIFNENEVGHDDVVI---ICDICETSLQGPAYGCG--TCEFSIHKSCAELPLKID 68
            H H L F E E   DDV     +CD C   +  P + C    C F +H+SCAELP    
Sbjct: 254 GHEHLLKFTEEE-SDDDVKYFDKLCDACVRPIMPPFFSCEEENCGFFLHQSCAELPRTKQ 312

Query: 69  HPFHCHPLTL-SKTNH---HRCDACLDECSGMAYRCHECCYNLHYHCTALKPSI 118
           HPFH HPLTL SK  +   ++CD C    +G  YRC  C ++L   C  L+  I
Sbjct: 313 HPFHTHPLTLQSKAPYDGIYKCDGCRRLSNGFVYRCDVCQFDLDVCCGTLEERI 366

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144591|ref|XP_002325342.1| predicted protein [Populus trichocarpa] gi|222862217|gb|EEE99723.1| predicted protein [Populus trichocarpa]

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 30  DVVIICDICETSLQGPAYGCGTCEFSIHKSCAELPLKIDHPFH-CHPLTLSKTNH-HRCD 87
           +V   C  C+  L GPAYGC  CEF +H+SC ++P +I HP+H  HPL      +   CD
Sbjct: 162 EVEKTCTGCQLLLSGPAYGCLDCEFYLHESCKDMPSEIQHPYHPPHPLRAQVAEYGSECD 221

Query: 88  ACLDECSGMAYRCHECCYNLHYHCT 112
           AC      + YRC EC +NLH  C 
Sbjct: 222 ACHMPIRKVFYRCSECDFNLHILCA 246

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224871|ref|NP_181966.1| cysteine/histidine-rich C1 domain-containing protein [Arabidopsis thaliana] gi|3128201|gb|AAC16105.1| unknown protein [Arabidopsis thaliana] gi|37202108|gb|AAQ89669.1| At2g44380 [Arabidopsis thaliana] gi|51971661|dbj|BAD44495.1| unknown protein [Arabidopsis thaliana] gi|330255320|gb|AEC10414.1| cysteine/histidine-rich C1 domain-containing protein [Arabidopsis thaliana]

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 110/247 (44%), Gaps = 26/247 (10%)

Query: 3   KQFERDKLKHTSHMHYL-IFNENEVGHDDVVIICDICETSLQGPAYGC--GTCEFSIHKS 59
           K   R  ++H SH H L +F       D+  ++C  CE  L G A+ C    C++ +HKS
Sbjct: 5   KPVNRPSVRHASHNHPLRVFK----ARDEDEVVCSGCELELTGQAFKCMKSDCDYFLHKS 60

Query: 60  CAELPLKIDHPFHC-HPLTLSKT----NHHRCDACLDECSGMAYRCHECCYNLHYHCTAL 114
           C +LP + +H  H  H LTL  +      + CDAC +  SG  Y C EC Y++H  C  +
Sbjct: 61  CFDLPRETNHKSHPNHSLTLLHSPPYGQSYTCDACGEYGSGFTYNCSECQYDVHVGCAFI 120

Query: 115 KPSINFKELKCVLHEVMQSLLEKQP---QDVELRTIQERNPEDLTFHDVFSSFTEKDRN- 170
             ++  ++     HE   +LL   P   ++   + I +   E ++ +       E D   
Sbjct: 121 PETVERED-----HEHPLTLLYNTPCKGREDGAKFICDVCEEKMSENLWVYYCKECDYGT 175

Query: 171 --QLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKN 228
                 + E+ ESE  G  +   E G+  S V+  +S   + D +A   L  +    + N
Sbjct: 176 HVHSCAVYEDHESEKRGGGR---EEGEASSAVSRMKSLMKAQDEMAALQLEARIRNDTNN 232

Query: 229 MSVEFWD 235
             ++ WD
Sbjct: 233 AILDLWD 239

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15226371|ref|NP_180394.1| cysteine/histidine-rich C1 domain-containing protein [Arabidopsis thaliana] gi|4803954|gb|AAD29826.1| unknown protein [Arabidopsis thaliana] gi|330253004|gb|AEC08098.1| cysteine/histidine-rich C1 domain-containing protein [Arabidopsis thaliana]

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 72/142 (50%), Gaps = 18/142 (12%)

Query: 7   RDKLKHTSHMHYL-IFNENEVGHDDVVIICDICETSLQGPAYGC--GTCEFSIHKSCAEL 63
           R  ++H SH H L +FN  E    +  IIC  CE  L G A+ C    C++ +HKSC +L
Sbjct: 8   RPSVRHPSHNHPLRVFNSKE----EDEIICSGCEHDLIGQAFKCTKSECDYFLHKSCFDL 63

Query: 64  PLKIDHPFHC-HPLTL-----SKTNHHRCDACLDECSGMAYRCHECCYNLHYHCTALKPS 117
           P +I H  H  HPLTL     +  + + CDAC +  S   Y C EC Y++H  C  +  +
Sbjct: 64  PGEIHHKSHTNHPLTLLHSPPNGLSTYTCDACGEYGSAFTYHCSECKYHVHVGCAFVPEN 123

Query: 118 INFKELKCVLHEVMQSLLEKQP 139
           +  ++     HE   +LL   P
Sbjct: 124 VKRED-----HEHPLTLLYNTP 140

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137818|ref|XP_002322659.1| predicted protein [Populus trichocarpa] gi|222867289|gb|EEF04420.1| predicted protein [Populus trichocarpa]

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 55/104 (52%), Gaps = 4/104 (3%)

Query: 17  HYLIFNENEVGHDDVVIICDICETSLQGPAYGCGTCEFSIHKSCAELPLKIDHPFHC-HP 75
           H LI NE +  H + V+ C +C+  + GP+Y C +C   +HK CAELP +I    H  HP
Sbjct: 131 HPLILNEEQEYHGEGVVCC-VCKEPMSGPSYSCTSCNVFLHKKCAELPPEIKRHLHPEHP 189

Query: 76  LTLSKTNHHRCDACLDEC-SGMAYRCHECCYNLHYHCTALKPSI 118
           L L   +H  C  C + C    AY C  C +NLH  C A  P +
Sbjct: 190 LCLLPNHHMICGFCKETCYESFAYCCFVCEFNLHIKC-AFPPCV 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
TAIR|locus:2050477	247	AT2G44380 [Arabidopsis thalian	0.524	0.518	0.337	2.4e-19
TAIR|locus:2062804	248	AT2G28270 [Arabidopsis thalian	0.508	0.5	0.373	1.4e-16
TAIR|locus:2158347	250	AT5G43520 [Arabidopsis thalian	0.909	0.888	0.277	4.7e-16
TAIR|locus:2827948	248	AT2G17740 [Arabidopsis thalian	0.463	0.455	0.354	1.8e-14
TAIR|locus:2050589	250	AT2G44370 [Arabidopsis thalian	0.446	0.436	0.344	2.3e-14
TAIR|locus:2154689	596	AT5G54040 [Arabidopsis thalian	0.647	0.265	0.331	4.3e-14
TAIR|locus:2168728	234	AT5G40590 [Arabidopsis thalian	0.446	0.465	0.347	6.2e-14
TAIR|locus:2028977	726	AT1G66440 "AT1G66440" [Arabido	0.446	0.150	0.382	1.6e-13
TAIR|locus:2083158	769	AT3G50010 [Arabidopsis thalian	0.430	0.136	0.355	2.9e-13
TAIR|locus:2125083	652	AT4G01350 [Arabidopsis thalian	0.614	0.230	0.284	3.6e-13

TAIR|locus:2050477 AT2G44380 [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
 Identities = 49/145 (33%), Positives = 72/145 (49%)

Query:     3 KQFERDKLKHTSHMHYL-IFNENEVGHDDVVIICDICETSLQGPAYGC--GTCEFSIHKS 59
             K   R  ++H SH H L +F   +   D+VV  C  CE  L G A+ C    C++ +HKS
Sbjct:     5 KPVNRPSVRHASHNHPLRVFKARD--EDEVV--CSGCELELTGQAFKCMKSDCDYFLHKS 60

Query:    60 CAELPLKIDHPFHC-HPLTLSKT----NHHRCDACLDECSGMAYRCHECCYNLHYHCTAL 114
             C +LP + +H  H  H LTL  +      + CDAC +  SG  Y C EC Y++H  C  +
Sbjct:    61 CFDLPRETNHKSHPNHSLTLLHSPPYGQSYTCDACGEYGSGFTYNCSECQYDVHVGCAFI 120

Query:   115 KPSINFKELKCVLHEVMQSLLEKQP 139
               ++  ++     HE   +LL   P
Sbjct:   121 PETVERED-----HEHPLTLLYNTP 140

GO:0005634 "nucleus" evidence=ISM

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2062804 AT2G28270 [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 53/142 (37%), Positives = 73/142 (51%)

Query:     7 RDKLKHTSHMHYL-IFNENEVGHDDVVIICDICETSLQGPAYGC--GTCEFSIHKSCAEL 63
             R  ++H SH H L +FN  E   D+  IIC  CE  L G A+ C    C++ +HKSC +L
Sbjct:     8 RPSVRHPSHNHPLRVFNSKE--EDE--IICSGCEHDLIGQAFKCTKSECDYFLHKSCFDL 63

Query:    64 PLKIDHPFHC-HPLTL--SKTNH---HRCDACLDECSGMAYRCHECCYNLHYHCTALKPS 117
             P +I H  H  HPLTL  S  N    + CDAC +  S   Y C EC Y++H  C  +  +
Sbjct:    64 PGEIHHKSHTNHPLTLLHSPPNGLSTYTCDACGEYGSAFTYHCSECKYHVHVGCAFVPEN 123

Query:   118 INFKELKCVLHEVMQSLLEKQP 139
             +  ++     HE   +LL   P
Sbjct:   124 VKRED-----HEHPLTLLYNTP 140

GO:0005634 "nucleus" evidence=ISM

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2158347 AT5G43520 [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 68/245 (27%), Positives = 109/245 (44%)

Query:     3 KQFERDKLKHTSHMHYL-IFNENEVGHDDVVIICDICETSLQGPAYGC--GTCEFSIHKS 59
             K   R  ++H SH H L +F   E   D+    C  CE  L G A+ C    C++ +HKS
Sbjct:     9 KPVNRQSVRHPSHNHPLRVFKAKE--EDETA--CSGCELELTGQAFKCIKSECDYFLHKS 64

Query:    60 CAELPLKIDHPFHC-HPLTLSKT-----NHHRCDACLDECSGMAYRCHECCYNLHYHCTA 113
             C +LP + ++  H  HPLTL  +     + + CDAC    SG +Y C  C Y+LH  C  
Sbjct:    65 CFDLPSETNNKSHQDHPLTLLHSPPDDRSVYTCDACDQYGSGFSYHCSNCNYSLHVGCAF 124

Query:   114 LKPSINFKELKCVLHEVMQSLLEKQPQDVELRTIQERNPEDLTFHDVFSSFTEKDRNQLD 173
             +  +++ ++     HE   +LL   P      T    +  D T  +    +  KD +   
Sbjct:   125 IPETVDRED-----HEHPLTLLYCTPCKGREDTYFTCSACDETISEDLWMYYCKDCDYGT 179

Query:   174 DITENIESEIAGIKKT-LSETGDQGSKVTISESYPYSDDTLA--QFILRLQNSLRSKNMS 230
              +      E  G ++    E G+  S  +  +S   + D +A  Q   R++N  R  N +
Sbjct:   180 HLHSCAAYEDQGKEEEDEDEEGEASSPASRIKSLMKAQDEMAAMQLEARIENDAR--NAA 237

Query:   231 VEFWD 235
             ++ WD
Sbjct:   238 LDLWD 242

GO:0005634 "nucleus" evidence=ISM

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2827948 AT2G17740 [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 44/124 (35%), Positives = 66/124 (53%)

Query:     7 RDKLKHTSHMHYLIFNENEVGHDDVVIICDICETSLQGPAYGC--GTCEFSIHKSCAELP 64
             R  ++H SH H L  ++ +V  D+  IIC  C+  L G  + C    C++ +HKSC +LP
Sbjct:     4 RPSVRHPSHNHPLRGHKAQV-EDE--IICSGCDLDLLGAYFKCTKSECDYFLHKSCFDLP 60

Query:    65 LKIDHPFHC-HPLTL--SKTNH---HRCDACLDECSGMAYRCHECCYNLHYHCTALKPSI 118
              +I H  H  HPL L  S  N+   + CDAC +  SG  Y C  C Y++H  C ++  ++
Sbjct:    61 REIRHKSHPDHPLILLYSPQNNNSTYTCDACGEYGSGFTYNCSICQYDVHVGCVSVPETM 120

Query:   119 NFKE 122
                E
Sbjct:   121 KHDE 124

GO:0005634 "nucleus" evidence=ISM

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2050589 AT2G44370 [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 41/119 (34%), Positives = 63/119 (52%)

Query:     7 RDKLKHTSHMHYLIFNENEVGHDDVVIICDICETSLQGPAYGC--GTCEFSIHKSCAELP 64
             +  ++H SH H L  ++ +V  +   IIC  C+  L G A+ C    C++ +HKSC ELP
Sbjct:     5 KPSVRHPSHNHPLRSHKAQVEEE---IICSGCDLDLIGAAFKCTKSECDYFLHKSCFELP 61

Query:    65 LKIDHPFHC-HPLTLSKT----NHHRCDACLDECSGMAYRCHECCYNLHYHCTALKPSI 118
              +  H  H  HPL L  +    + + CDAC +  SG  Y C  C Y++H  C ++  S+
Sbjct:    62 RETRHKAHPDHPLILLYSPPYESTYTCDACGEYGSGFTYNCSICQYDVHVGCVSMPESV 120

GO:0005634 "nucleus" evidence=ISM

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2154689 AT5G54040 [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.3e-14, P = 4.3e-14
 Identities = 55/166 (33%), Positives = 81/166 (48%)

Query:     6 ERDKLKHTSHM-HYLIFNENEVGHDDVVIICDICETSLQG-PAYGCGTCEFSIHKSCAEL 63
             E+  + H SH  H L  +E  V  DD  + C  C  ++ G P Y C  C+F +HK+CA L
Sbjct:   286 EKGDIIHFSHEEHVLRLDEIYVT-DDANMRCRCCVLAINGDPCYRCVECDFILHKACANL 344

Query:    64 PLKIDHPFHCHPLTLSKTNHH--RCDACLDECSGMAYRC-HECCYNLHYHCTALKPSINF 120
             P K+ H  H H LTLS T +   RC AC  + +G  Y C HE C ++ +       S++ 
Sbjct:   345 PRKMRHLLHKHKLTLSSTGNRFLRCKACDIKTNGFIYECLHEGCKSISFTYDVRCSSVS- 403

Query:   121 KELKCVLHE-VMQSLLEKQPQDVELRTIQERNPEDLTFHDVFSSFT 165
             +     LH+  +   LEK  +    +   + NP + T  D +S  T
Sbjct:   404 EPFHHDLHQHPLYFTLEKTNKCHACKRKIDWNPLNCTVCDDYSLCT 449

GO:0005634 "nucleus" evidence=ISM

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2168728 AT5G40590 [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 41/118 (34%), Positives = 63/118 (53%)

Query:     7 RDKLKHTSHMHYLIFNENEVGHDDVVIICDICETSLQGPAYGC---GTCEFSIHKSCAEL 63
             R  ++H SH H L  ++ E   D+  IIC  C+  L G A+ C     C++ +HKSC EL
Sbjct:     4 RQSVRHPSHNHPLRGHKCEA-KDE--IICSGCDLDLVGAAFKCTKSSDCDYFLHKSCFEL 60

Query:    64 PLKIDHPFHC-HPLTL--SKTNHHRCDACLDECSGMAYRCHECCYNLHYHCTALKPSI 118
             P + +H  H  H LTL  S  + + C+AC +  S   Y C  C Y++H  C ++  ++
Sbjct:    61 PRETNHKSHQPHTLTLIYSPKSTYTCNACGEYGSSFTYNCSICQYDVHVGCVSMPETV 118

GO:0005634 "nucleus" evidence=ISM

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2028977 AT1G66440 "AT1G66440" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 47/123 (38%), Positives = 60/123 (48%)

Query:    10 LKHTSHM-HYLIFNENEVGHD-DVVIICDICETSLQ-GPAYGCGTCEFSIHKSCAELPLK 66
             ++H SH  HYL  ++N  G D D   +C  C T +  G  Y C  C F +H+ CA    K
Sbjct:   425 IQHFSHQQHYLRLDDN-TGRDYDESKLCQACITPIYFGKFYSCMECNFILHEECANFSRK 483

Query:    67 IDHPFHCHPLTL-----SKTN-HHRCDAC-LDECSGMAYRCHE--CCYNLHYHC-TALKP 116
             I HP H H LTL      K N H  C AC     +G  Y CH   C +NLH  C T  +P
Sbjct:   484 IQHPIHPHLLTLVTSATDKANTHDLCSACPWLFTTGFFYECHREGCRFNLHVRCGTISEP 543

Query:   117 SIN 119
              ++
Sbjct:   544 LVH 546

GO:0005575 "cellular_component" evidence=ND

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2083158 AT3G50010 [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 2.9e-13, P = 2.9e-13
 Identities = 42/118 (35%), Positives = 63/118 (53%)

Query:    10 LKHTSHMHYLIFNENEVGHD-DVVIICDICETSLQ-GPAYGCG-TCEFSIHKSCAELPLK 66
             ++H +H H L  +  + G D D   +C+IC T +  G  Y C  +C++++H++CA  P K
Sbjct:   468 IRHFTHRHLLRLDV-DTGRDYDEDKLCNICITPIYFGNFYSCTPSCDYNLHETCANFPRK 526

Query:    67 IDHPFHCHPLTLS------KTNHHRCDACLDECS-GMAYRCHECCYNLHYHCT-ALKP 116
             IDHP H H L L       + N + C  C  + + G  YRC +C Y LH  C  A +P
Sbjct:   527 IDHPIHPHQLNLEAGYGDGEINEYECSVCPRKRTVGFLYRCRKCFY-LHVQCAIASEP 583

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2125083 AT4G01350 [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.6e-13, P = 3.6e-13
 Identities = 47/165 (28%), Positives = 71/165 (43%)

Query:     9 KLKHTSHMHYLIFNENEVGHDDVVIICDICETSLQGPAYGCGTCEFSIHKSCAELPLK-- 66
             ++ H+SH  + +   N    D +   CD+C   L  P Y C TCEF +  +CA  P    
Sbjct:    60 EISHSSHHQHPLLLTN----DSIDGPCDLCGQKLLPPCYSCSTCEFKVDLTCAMKPSPPA 115

Query:    67 IDHPF-HCHPLTLSKTNHHR--CDACLDECSGMAYRCHECCYNLHYHCTALKPSINFKEL 123
             I+HP  H H L   K    +  C+ C D  +G +Y C EC    H +C  L   +N    
Sbjct:   116 IEHPLCHHHSLVFLKKREEKVSCELCKDSIAGPSYSCLECDVYFHVNCIQLSKEVNHP-- 173

Query:   124 KC-VLHEVMQSLLEKQPQDVELRTIQ--ERNPEDLTFHDVFSSFT 165
              C   H +     E    D E   +   ++  E++ +H    +FT
Sbjct:   174 -CHSAHPLKLIPFESLTDDAETTCLLCGKKPAENMLYHCSVCNFT 217

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.19070001 hypothetical protein (740 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
KOG0696	683	consensus Serine/threonine protein kinase [Signal	100.0
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.24
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.23
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.19
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.18
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.1
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.06
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.02
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.02
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	98.99
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	98.98
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	98.98
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	98.92
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	98.92
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	98.91
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	98.87
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	98.87
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	98.85
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	98.85
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	98.83
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	98.82
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	98.82
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	98.81
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	98.8
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	98.8
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	98.78
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	98.78
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	98.77
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	98.77
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	98.76
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	98.76
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	98.75
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	98.74
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	98.71
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	98.69
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	98.67
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	98.67
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	98.67
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	98.66
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	98.66
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	98.65
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	98.65
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	98.64
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	98.64
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	98.57
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	98.56
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	98.54
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	98.52
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	98.5
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	98.49
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	98.45
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	98.45
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	98.44
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	98.44
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	98.44
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	98.43
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	98.43
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	98.42
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	98.42
PF07649	30	C1_3: C1-like domain; InterPro: IPR011424 This sho	98.41
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	98.39
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	98.38
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	98.37
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	98.36
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	98.35
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	98.35
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	98.32
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	98.31
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	98.31
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	98.29
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	98.29
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	98.26
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	98.26
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	98.23
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	98.23
PF03107	30	C1_2: C1 domain; InterPro: IPR004146 This short do	98.22
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	98.22
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	98.21
PF07649	30	C1_3: C1-like domain; InterPro: IPR011424 This sho	98.21
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	98.21
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	98.2
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	98.19
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	98.18
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	98.16
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	98.11
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	98.1
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	98.08
KOG0694	694	consensus Serine/threonine protein kinase [Signal	98.07
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	98.07
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	98.04
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	98.03
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	98.02
PF03107	30	C1_2: C1 domain; InterPro: IPR004146 This short do	98.02
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	98.0
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	97.94
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	97.93
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	97.91
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	97.86
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	97.84
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	97.83
cd02340	43	ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre	97.82
PF00130	53	C1_1: Phorbol esters/diacylglycerol binding domain	97.6
cd02339	45	ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre	97.6
PF00130	53	C1_1: Phorbol esters/diacylglycerol binding domain	97.58
cd02249	46	ZZ Zinc finger, ZZ type. Zinc finger present in dy	97.48
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	97.47
cd02338	49	ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre	97.46
cd02340	43	ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre	97.4
cd02341	48	ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present	97.37
cd02334	49	ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr	97.28
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	97.28
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	97.26
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	97.25
cd02342	43	ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger pre	97.07
cd02343	48	ZZ_EF Zinc finger, ZZ type. Zinc finger present in	97.07
KOG0696	683	consensus Serine/threonine protein kinase [Signal	97.05
cd02344	45	ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present	97.05
cd00029	50	C1 Protein kinase C conserved region 1 (C1) . Cyst	97.04
cd02335	49	ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present	97.03
cd02345	49	ZZ_dah Zinc finger, ZZ type. Zinc finger present i	97.01
cd00029	50	C1 Protein kinase C conserved region 1 (C1) . Cyst	96.97
cd02339	45	ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre	96.96
cd02343	48	ZZ_EF Zinc finger, ZZ type. Zinc finger present in	96.94
PLN03008	868	Phospholipase D delta	96.93
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	96.92
cd02249	46	ZZ Zinc finger, ZZ type. Zinc finger present in dy	96.87
cd02345	49	ZZ_dah Zinc finger, ZZ type. Zinc finger present i	96.81
smart00109	49	C1 Protein kinase C conserved region 1 (C1) domain	96.76
smart00109	49	C1 Protein kinase C conserved region 1 (C1) domain	96.73
cd02338	49	ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre	96.69
cd02334	49	ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr	96.61
smart00291	44	ZnF_ZZ Zinc-binding domain, present in Dystrophin,	96.59
cd02337	41	ZZ_CBP Zinc finger, ZZ type. Zinc finger present i	96.58
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	96.57
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	96.52
PF00569	46	ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc	96.51
PF00569	46	ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc	96.49
cd02341	48	ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present	96.46
cd02344	45	ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present	96.43
KOG4582	278	consensus Uncharacterized conserved protein, conta	96.42
cd00030	102	C2 C2 domain. The C2 domain was first identified i	96.2
cd02342	43	ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger pre	96.16
cd02335	49	ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present	96.1
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	96.1
smart00291	44	ZnF_ZZ Zinc-binding domain, present in Dystrophin,	96.08
cd02337	41	ZZ_CBP Zinc finger, ZZ type. Zinc finger present i	95.5
KOG1280	381	consensus Uncharacterized conserved protein contai	95.31
KOG1280	381	consensus Uncharacterized conserved protein contai	94.8
PLN02952	599	phosphoinositide phospholipase C	94.6
KOG4582	278	consensus Uncharacterized conserved protein, conta	94.45
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	93.02
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	92.73
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	92.6
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	91.79
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	91.51
KOG0695	593	consensus Serine/threonine protein kinase [Signal	89.88
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	88.6
cd02336	45	ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present	87.78
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	87.41
PLN02222	581	phosphoinositide phospholipase C 2	86.55
KOG0956	900	consensus PHD finger protein AF10 [General functio	86.45
KOG2807	378	consensus RNA polymerase II transcription initiati	86.18
PF13832	110	zf-HC5HC2H_2: PHD-zinc-finger like domain	85.91
KOG0169	746	consensus Phosphoinositide-specific phospholipase	85.2
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	85.19
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	84.99
KOG2996	865	consensus Rho guanine nucleotide exchange factor V	84.49
PLN02230	598	phosphoinositide phospholipase C 4	84.25
KOG4286	966	consensus Dystrophin-like protein [Cell motility;	84.17
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	83.23
PLN02223	537	phosphoinositide phospholipase C	82.87
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	81.56
PF00628	51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	81.01
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	80.2

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-55  Score=409.05  Aligned_cols=192  Identities=22%  Similarity=0.422  Sum_probs=172.2

Q ss_pred             cccccccccccCCCCC---cEEeCCCCCccccccccCCC----------cCCCCCCCCcceEeec-CcccccccccCCCC
Q 043301           30 DVVIICDICETSLQGP---AYGCGTCEFSIHKSCAELPL----------KIDHPFHCHPLTLSKT-NHHRCDACLDECSG   95 (244)
Q Consensus        30 ~~~~~C~~C~~~i~g~---~Y~C~~C~F~lH~~Ca~~p~----------~i~hp~H~H~L~L~~~-~~~~Cd~Cg~~~~g   95 (244)
                      ..+++|++|.++|||+   +|+|++|.|++|++|+++..          ..+.|..+|.+++++| ++++||+||+.++|
T Consensus        54 KqPTfCsHCkDFiwGfgKQGfQCqvC~fvvHkrChefVtF~CPGadkg~dtDdpr~kHkf~~~tYssPTFCDhCGsLLyG  133 (683)
T KOG0696|consen   54 KQPTFCSHCKDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGADKGPDTDDPRSKHKFKIHTYSSPTFCDHCGSLLYG  133 (683)
T ss_pred             cCCchhhhhhhheeccccCceeeeEEeehhhhhhcceEEEECCCCCCCCCCCCcccccceeeeecCCCchhhhHHHHHHH
Confidence            5689999999999986   79999999999999999742          2466778999999999 99999999999988


Q ss_pred             e---eEEcCCccceeccccccCcCccccCccccCCcCccccccccCCCCcEEEEEeccCCcceeeecccccccccCCCCc
Q 043301           96 M---AYRCHECCYNLHYHCTALKPSINFKELKCVLHEVMQSLLEKQPQDVELRTIQERNPEDLTFHDVFSSFTEKDRNQL  172 (244)
Q Consensus        96 ~---~Y~C~~Cd~~lH~~Ca~~p~~i~~~~~~h~~H~h~l~L~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~n~l  172 (244)
                      .   +++|+.|++++|.+|+..+|++  |+.+|++.+          |++.+.+.++++.|.++|.||. ||||||||||
T Consensus       134 l~HQGmKC~~C~mNVH~rCv~nVPsl--CG~DhtE~R----------Grl~l~~~~~~~~l~v~i~ea~-NLiPMDpNGl  200 (683)
T KOG0696|consen  134 LIHQGMKCDTCDMNVHHRCVENVPSL--CGTDHTERR----------GRLYLEAHIKRDVLTVTIKEAK-NLIPMDPNGL  200 (683)
T ss_pred             HHhcccccccccchHHHHHhhcCCcc--cCCcchhhc----------ceEEEEEEecCceEEEEehhhc-cccccCCCCC
Confidence            6   6999999999999999999999  999999998          9999999999999999999998 5999999999


Q ss_pred             chhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEEEeccCccccc
Q 043301          173 DDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       173 ~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (244)
                      ||||+++|     +++.-...+||+||++.+++||.|||   +|+|+|+|+|+|||||||||||||||||
T Consensus       201 SDPYvk~k-----liPD~~~~sKqKTkTik~~LNP~wNE---tftf~Lkp~DkdrRlsiEvWDWDrTsRN  262 (683)
T KOG0696|consen  201 SDPYVKLK-----LIPDPKNESKQKTKTIKATLNPVWNE---TFTFKLKPSDKDRRLSIEVWDWDRTSRN  262 (683)
T ss_pred             CCcceeEE-----eccCCcchhhhhhhhhhhhcCccccc---eeEEecccccccceeEEEEecccccccc
Confidence            99998854     22222223899999666688888888   6999999999999999999999999999

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.24  E-value=3.4e-12  Score=101.55  Aligned_cols=89  Identities=15%  Similarity=0.148  Sum_probs=69.5

Q ss_pred             CCcEEEEEeccCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhhhh
Q 043301          140 QDVELRTIQERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTLAQ  215 (244)
Q Consensus       140 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~  215 (244)
                      |++++...-..+.+.+.|-+|.+ |.++| +|.+|||++         ..|.|.    .+++|++.-.+.+|.|||   +
T Consensus         2 G~l~~~l~y~~~~L~V~Vi~A~~-L~~~~-~~~~DpyVk---------v~l~~~~~~~~~~kT~v~~~~~nP~wnE---~   67 (122)
T cd08381           2 GQVKLSISYKNGTLFVMVMHAKN-LPLLD-GSDPDPYVK---------TYLLPDPQKTTKRKTKVVRKTRNPTFNE---M   67 (122)
T ss_pred             CeEEEEEEEeCCEEEEEEEEeeC-CCCCC-CCCCCCEEE---------EEEeeCCccCCceeCCccCCCCCCCccc---E
Confidence            55666665567778899999985 89999 999999988         445443    466788555688888888   6


Q ss_pred             hhhhcCC--CCccceeEEEEeccCccccc
Q 043301          216 FILRLQN--SLRSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       216 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~  242 (244)
                      |.|.+.+  +..++.|.|+|||||+.++|
T Consensus        68 F~f~~~~~~~l~~~~L~~~V~d~d~~~~~   96 (122)
T cd08381          68 LVYDGLPVEDLQQRVLQVSVWSHDSLVEN   96 (122)
T ss_pred             EEEecCChHHhCCCEEEEEEEeCCCCcCC
Confidence            9999843  34678999999999999876

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.23  E-value=4.3e-12  Score=103.43  Aligned_cols=83  Identities=6%  Similarity=0.011  Sum_probs=61.2

Q ss_pred             CcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecC-CCCChhhhhhhhhhcCCCCccceeE
Q 043301          152 PEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISES-YPYSDDTLAQFILRLQNSLRSKNMS  230 (244)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  230 (244)
                      .|++.|-+|+ +|.+|+-++..|||+++.     +...-....++||.+.-.++ +|+|||   +|+|++.+++.+.+|.
T Consensus        15 rLtV~Vikar-nL~~~~~~~~~dpYVKV~-----L~~~~k~~~KkKT~v~k~t~~~P~fNE---sF~Fdv~~~~~~v~l~   85 (135)
T cd08692          15 RIQLQILEAQ-NLPSSSTPLTLSFFVKVG-----MFSTGGLLYKKKTRLVKSSNGQVKWGE---TMIFPVTQQEHGIQFL   85 (135)
T ss_pred             eEEEEEEEcc-CCCcccCCCCCCcEEEEE-----EEECCCcceeecCccEECCCCCceecc---eEEEeCCchhheeEEE
Confidence            4668899998 589996455557998854     11111112567777444453 688888   6999999999999999


Q ss_pred             EEEeccCcccccC
Q 043301          231 VEFWDLDDVLVNV  243 (244)
Q Consensus       231 ~~~~~~~~~~~~~  243 (244)
                      |+|||||++++|-
T Consensus        86 v~v~d~~~~~~n~   98 (135)
T cd08692          86 IKLYSRSSVRRKH   98 (135)
T ss_pred             EEEEeCCCCcCCc
Confidence            9999999999983

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.19  E-value=1.7e-11  Score=101.12  Aligned_cols=89  Identities=16%  Similarity=0.227  Sum_probs=73.4

Q ss_pred             CCcEEEEEeccCCcceeeecccccccccC-CCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhhh
Q 043301          140 QDVELRTIQERNPEDLTFHDVFSSFTEKD-RNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTLA  214 (244)
Q Consensus       140 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~  214 (244)
                      |++++.+.-..+.|.++|-.|.+ |.++| .+|.+|||++         ..|-++    .+++|++.-.+.+|.|||   
T Consensus        18 G~l~lsl~y~~~~L~V~Vi~Arn-L~~~~~~~g~sDPYVK---------v~Llp~~~~~~k~KT~v~kktlnPvfNE---   84 (146)
T cd04028          18 GDIQLGLYDKKGQLEVEVIRARG-LVQKPGSKVLPAPYVK---------VYLLEGKKCIAKKKTKIARKTLDPLYQQ---   84 (146)
T ss_pred             ceEEEEEEeCCCEEEEEEEEeeC-CCcccCCCCCcCCeEE---------EEEECCCccccceeceecCCCCCCccCC---
Confidence            77777776677889999999985 88875 7899999988         555554    377888666799999998   


Q ss_pred             hhhhhcCCCCccceeEEEEe-ccCcccccC
Q 043301          215 QFILRLQNSLRSKNMSVEFW-DLDDVLVNV  243 (244)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  243 (244)
                      +|.|.+.  ..++.|.|+|| |||+.++|.
T Consensus        85 ~F~f~v~--l~~~~L~v~V~~d~~~~~~~~  112 (146)
T cd04028          85 QLVFDVS--PTGKTLQVIVWGDYGRMDKKV  112 (146)
T ss_pred             eEEEEEc--CCCCEEEEEEEeCCCCCCCCc
Confidence            6999988  78899999999 899988874

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.18  E-value=9.4e-12  Score=98.73  Aligned_cols=88  Identities=11%  Similarity=0.100  Sum_probs=70.8

Q ss_pred             CCcEEEEEeccCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhhhh
Q 043301          140 QDVELRTIQERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTLAQ  215 (244)
Q Consensus       140 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~  215 (244)
                      |++++......+.|.++|.+|.+ |.+|| +|.+|||++         ..|-|.    .+++|++.-.+.+|.|||   +
T Consensus         1 G~l~l~~~~~~~~L~V~Vi~ar~-L~~~~-~g~~dpYVk---------v~l~p~~~~~~~~kT~v~~~t~~P~~nE---~   66 (119)
T cd08685           1 GQLKLSIEGQNRKLTLHVLEAKG-LRSTN-SGTCNSYVK---------ISLSPDKEVRFRQKTSTVPDSANPLFHE---T   66 (119)
T ss_pred             CEEEEEEEEcCCEEEEEEEEEEC-CCCCC-CCCCCeeEE---------EEEEeCCCCcceEeCccccCCCCCcccc---E
Confidence            45666666677889999999985 89999 999999988         444443    455788555688899988   6


Q ss_pred             hhhhcCCCCccceeEEEEeccCcccc
Q 043301          216 FILRLQNSLRSKNMSVEFWDLDDVLV  241 (244)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (244)
                      |.|.+..++.+++|.|+|||.|+.++
T Consensus        67 F~f~v~~~~~~~~l~v~V~~~~~~~~   92 (119)
T cd08685          67 FSFDVNERDYQKRLLVTVWNKLSKSR   92 (119)
T ss_pred             EEEEcChHHhCCEEEEEEECCCCCcC
Confidence            99999988888899999999998764

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.10  E-value=4.4e-11  Score=97.28  Aligned_cols=80  Identities=8%  Similarity=0.065  Sum_probs=64.7

Q ss_pred             cCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhhhhhhhhcCCCC-
Q 043301          150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTLAQFILRLQNSL-  224 (244)
Q Consensus       150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-  224 (244)
                      .+.|.++|-.|.+ |.++|.+|.+|||++         ..|.++    .+++|++.-.+.||.|||   +|.|++..++ 
T Consensus        14 ~~~L~V~Vi~A~n-L~~~~~~g~~DpyVk---------v~l~~~~~~~~k~kT~v~k~t~nP~~nE---~f~F~v~~~~l   80 (136)
T cd08406          14 AERLTVVVVKARN-LVWDNGKTTADPFVK---------VYLLQDGRKISKKKTSVKRDDTNPIFNE---AMIFSVPAIVL   80 (136)
T ss_pred             CCEEEEEEEEeeC-CCCccCCCCCCeEEE---------EEEEeCCccccccCCccccCCCCCeece---eEEEECCHHHh
Confidence            3467799999985 899999999999987         445444    355777555688898888   6999998764 


Q ss_pred             ccceeEEEEeccCccccc
Q 043301          225 RSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~  242 (244)
                      .+..|.|+|||||+.++|
T Consensus        81 ~~~~l~~~V~~~d~~~~~   98 (136)
T cd08406          81 QDLSLRVTVAESTEDGKT   98 (136)
T ss_pred             CCcEEEEEEEeCCCCCCC
Confidence            578899999999999887

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.06  E-value=1e-10  Score=93.29  Aligned_cols=91  Identities=12%  Similarity=0.159  Sum_probs=68.2

Q ss_pred             CCcEEEEEec--cCCcceeeecccccccccCCC-CcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhh
Q 043301          140 QDVELRTIQE--RNPEDLTFHDVFSSFTEKDRN-QLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDT  212 (244)
Q Consensus       140 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~n-~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~  212 (244)
                      |++++...-.  .+.|.++|-.|.+ |.++|.+ |.+|||+++         .|.|.    .+++|++.-.+.+|.||| 
T Consensus         2 G~i~~sl~y~~~~~~L~V~vi~a~~-L~~~d~~~g~~dpyVkv---------~l~p~~~~~~~~kT~v~~~t~nP~~nE-   70 (125)
T cd08393           2 GSVQFALDYDPKLRELHVHVIQCQD-LAAADPKKQRSDPYVKT---------YLLPDKSNRGKRKTSVKKKTLNPVFNE-   70 (125)
T ss_pred             cEEEEEEEEECCCCEEEEEEEEeCC-CCCcCCCCCCCCcEEEE---------EEEcCCCccccccCccCcCCCCCccCc-
Confidence            4444444432  4468899999985 8999986 899999873         34332    456788555688899998 


Q ss_pred             hhhhhhhcCCCC-ccceeEEEEeccCcccccC
Q 043301          213 LAQFILRLQNSL-RSKNMSVEFWDLDDVLVNV  243 (244)
Q Consensus       213 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  243 (244)
                        +|.|.+..++ .++.|.|+|||+|+.++|-
T Consensus        71 --~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~  100 (125)
T cd08393          71 --TLRYKVEREELPTRVLNLSVWHRDSLGRNS  100 (125)
T ss_pred             --eEEEECCHHHhCCCEEEEEEEeCCCCCCCc
Confidence              6999998764 5578999999999998873

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.02  E-value=1.9e-10  Score=93.89  Aligned_cols=81  Identities=11%  Similarity=0.122  Sum_probs=63.7

Q ss_pred             ccCCcceeeecccccccccCCC--CcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhhhhhhhhcCC
Q 043301          149 ERNPEDLTFHDVFSSFTEKDRN--QLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTLAQFILRLQN  222 (244)
Q Consensus       149 ~~~~~~~~v~~~~~~~~~~~~n--~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  222 (244)
                      ..+.|.++|-.|. +|.+||.+  +-+|||+++.         |-+.    ++++|+..-.+.||.|||   .|+|++..
T Consensus        13 ~~~~L~V~V~kar-nL~~~d~~~~~~~DpYVKv~---------l~~~~~k~~kkkT~v~k~t~nPvfNE---~f~F~v~~   79 (138)
T cd08407          13 AANRLLVVVIKAK-NLHSDQLKLLLGIDVSVKVT---------LKHQNAKLKKKQTKRAKHKINPVWNE---MIMFELPS   79 (138)
T ss_pred             CCCeEEEEEEEec-CCCccccCCCCCCCeEEEEE---------EEcCCcccceeccceeeCCCCCcccc---EEEEECCH
Confidence            3567889999998 58999944  4489998843         4443    456788565688888888   69999987


Q ss_pred             CC-ccceeEEEEeccCccccc
Q 043301          223 SL-RSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       223 ~~-~~~~~~~~~~~~~~~~~~  242 (244)
                      ++ .++.|.|+|||+|+.++|
T Consensus        80 ~~L~~~~L~~~V~d~d~~~~~  100 (138)
T cd08407          80 ELLAASSVELEVLNQDSPGQS  100 (138)
T ss_pred             HHhCccEEEEEEEeCCCCcCc
Confidence            75 478899999999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.02  E-value=1.5e-10  Score=93.13  Aligned_cols=90  Identities=11%  Similarity=0.146  Sum_probs=69.3

Q ss_pred             CCcEEEEEec--cCCcceeeecccccccccCCC-CcchhhHHHHhhhhcccccccccC----CCCceeEeecCCCCChhh
Q 043301          140 QDVELRTIQE--RNPEDLTFHDVFSSFTEKDRN-QLDDITENIESEIAGIKKTLSETG----DQGSKVTISESYPYSDDT  212 (244)
Q Consensus       140 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~n-~l~d~~~~~~~~~~~~~~~l~~~~----~~~~~~~i~~~~~~~~~~  212 (244)
                      |++++...-.  .+.|.++|-.|.+ |.++|.+ |..|||++         ..|.|..    +++|++.-.+.+|.||| 
T Consensus         2 G~i~~sl~Y~~~~~~L~V~V~~a~n-L~~~d~~~g~~dpYVk---------v~llp~~~~~~k~kT~v~~~t~nPvfNE-   70 (128)
T cd08392           2 GEIEFALHYNFRTSCLEITIKACRN-LAYGDEKKKKCHPYVK---------VCLLPDKSHNSKRKTAVKKGTVNPVFNE-   70 (128)
T ss_pred             cEEEEEEEEeCCCCEEEEEEEecCC-CCccCCCCCCCCeEEE---------EEEEeCCcccceeecccccCCCCCccce-
Confidence            5555555433  5678899999985 8999986 99999987         4455543    55788555688999998 


Q ss_pred             hhhhhhhcCCCC-ccceeEEEEeccCccccc
Q 043301          213 LAQFILRLQNSL-RSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       213 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  242 (244)
                        +|.|.+..++ .++.|.|.|||+|+.++|
T Consensus        71 --~F~f~v~~~~l~~~~L~v~V~~~~~~~~~   99 (128)
T cd08392          71 --TLKYVVEADLLSSRQLQVSVWHSRTLKRR   99 (128)
T ss_pred             --EEEEEcCHHHhCCcEEEEEEEeCCCCcCc
Confidence              6999997764 468999999999998776

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=98.99  E-value=2e-10  Score=92.08  Aligned_cols=81  Identities=7%  Similarity=0.057  Sum_probs=65.2

Q ss_pred             cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccC-----CCCceeEeecCCCCChhhhhhhhhhcCCCC
Q 043301          150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETG-----DQGSKVTISESYPYSDDTLAQFILRLQNSL  224 (244)
Q Consensus       150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  224 (244)
                      .+.|.++|..|+ +|.+|+.+|.+|||++         ..|-|..     +.+|++.-.+.+|.|||   +|.|.+.+++
T Consensus        13 ~~~L~V~V~~ar-nL~~~~~~~~~dpyVK---------v~Llp~~~~~~~~~kT~v~~~t~nPvfnE---~F~f~v~~~~   79 (124)
T cd08680          13 DSSLVISVEQLR-NLSALSIPENSKVYVR---------VALLPCSSSTSCLFRTKALEDQDKPVFNE---VFRVPISSTK   79 (124)
T ss_pred             CCEEEEEEeEec-CCcccccCCCCCeEEE---------EEEccCCCCCCceEEcCccCCCCCCcccc---EEEEECCHHH
Confidence            345779999998 5899999999999987         4444443     56677555688999998   6999998875


Q ss_pred             -ccceeEEEEeccCcccccC
Q 043301          225 -RSKNMSVEFWDLDDVLVNV  243 (244)
Q Consensus       225 -~~~~~~~~~~~~~~~~~~~  243 (244)
                       .++.|.|.|||+|+.++|-
T Consensus        80 L~~~~L~~~V~~~~~~~~~~   99 (124)
T cd08680          80 LYQKTLQVDVCSVGPDQQEE   99 (124)
T ss_pred             hhcCEEEEEEEeCCCCCcee
Confidence             5599999999999998874

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=98.98  E-value=1.8e-10  Score=91.91  Aligned_cols=78  Identities=4%  Similarity=0.008  Sum_probs=59.9

Q ss_pred             cCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc---CCCCceeEeecCCCCChhhhhhhhhhcCCCC-c
Q 043301          150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET---GDQGSKVTISESYPYSDDTLAQFILRLQNSL-R  225 (244)
Q Consensus       150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~  225 (244)
                      .+.|+++|-+|.+ |- +  .|.+|||++         ..|-+.   .+++|+..-+++||+|||   +|+|++..++ .
T Consensus        13 ~~~L~V~vikA~~-L~-~--~g~sDPYVK---------v~L~~~~k~~k~kT~v~rktlnPvfnE---~f~F~v~~~~l~   76 (118)
T cd08677          13 KAELHVNILEAEN-IS-V--DAGCECYIS---------GCVSVSEGQKEAQTALKKLALHTQWEE---ELVFPLPEEESL   76 (118)
T ss_pred             CCEEEEEEEEecC-CC-C--CCCCCeEEE---------EEEcCCcCccEEEcceecCCCCCcccc---EEEEeCCHHHhC
Confidence            5567799999975 44 4  466999987         444432   466677555599999998   6999998884 5


Q ss_pred             cceeEEEEeccCcccccC
Q 043301          226 SKNMSVEFWDLDDVLVNV  243 (244)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~  243 (244)
                      ++-|.+.|||+||.|||-
T Consensus        77 ~~tL~~~V~d~Drfs~~d   94 (118)
T cd08677          77 DGTLTLTLRCCDRFSRHS   94 (118)
T ss_pred             CcEEEEEEEeCCCCCCCc
Confidence            678999999999999983

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=98.98  E-value=3.7e-10  Score=90.14  Aligned_cols=90  Identities=8%  Similarity=0.181  Sum_probs=66.9

Q ss_pred             CCcEEEEEe--ccCCcceeeecccccccccCC-CCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhh
Q 043301          140 QDVELRTIQ--ERNPEDLTFHDVFSSFTEKDR-NQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDT  212 (244)
Q Consensus       140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~-n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~  212 (244)
                      |++++...-  ..+.|.+.|-+|.+ |.++|. +|.+|||+++         .|.|.    .+++|++.-.+.+|.||| 
T Consensus         2 G~i~~sl~y~~~~~~L~V~Vi~a~~-L~~~~~~~~~~DpyVkv---------~l~p~~~~~~~~kT~v~~~t~nP~wnE-   70 (125)
T cd04029           2 GEILFSLSYDYKTQSLNVHVKECRN-LAYGDEAKKRSNPYVKT---------YLLPDKSRQSKRKTSIKRNTTNPVYNE-   70 (125)
T ss_pred             cEEEEEEEEECCCCeEEEEEEEecC-CCccCCCCCCCCcEEEE---------EEEcCCccccceEeeeeeCCCCCcccc-
Confidence            455555544  35568899999985 788874 6899999883         34443    356777444578899998 


Q ss_pred             hhhhhhhcCCCC-ccceeEEEEeccCccccc
Q 043301          213 LAQFILRLQNSL-RSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       213 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  242 (244)
                        +|.|.+..++ .++.|.|+|||||+.++|
T Consensus        71 --~f~f~i~~~~l~~~~L~~~V~d~~~~~~~   99 (125)
T cd04029          71 --TLKYSISHSQLETRTLQLSVWHYDRFGRN   99 (125)
T ss_pred             --eEEEECCHHHhCCCEEEEEEEECCCCCCC
Confidence              6999998765 567899999999998776

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=98.92  E-value=6.9e-10  Score=90.33  Aligned_cols=80  Identities=9%  Similarity=0.099  Sum_probs=64.8

Q ss_pred             cCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc-----CCCCceeEeecCCCCChhhhhhhhhhcCCCC
Q 043301          150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET-----GDQGSKVTISESYPYSDDTLAQFILRLQNSL  224 (244)
Q Consensus       150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  224 (244)
                      .+.|.++|-.|++ |.+++.+|..|||++         ..|-|.     .+.+|+..-.+.+|.|||   +|.|.+..++
T Consensus        14 ~~~L~V~Vikarn-L~~~~~~~~~dpyVk---------v~llp~~~~~~~~~kT~v~~~t~nPvfnE---tF~f~i~~~~   80 (138)
T cd08408          14 TGRLSVEVIKGSN-FKNLAMNKAPDTYVK---------LTLLNSDGQEISKSKTSIRRGQPDPEFKE---TFVFQVALFQ   80 (138)
T ss_pred             CCeEEEEEEEecC-CCccccCCCCCeeEE---------EEEEeCCCcceeeccceeecCCCCCcEee---eEEEECCHHH
Confidence            4667899999985 899999999999988         445442     245787555578899998   6999999875


Q ss_pred             -ccceeEEEEeccCccccc
Q 043301          225 -RSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       225 -~~~~~~~~~~~~~~~~~~  242 (244)
                       .++.|.|+|||+|+.++|
T Consensus        81 l~~~~L~~~V~~~~~~~~~   99 (138)
T cd08408          81 LSEVTLMFSVYNKRKMKRK   99 (138)
T ss_pred             hCccEEEEEEEECCCCCCC
Confidence             679999999999998776

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=98.92  E-value=6.3e-10  Score=88.62  Aligned_cols=89  Identities=10%  Similarity=0.150  Sum_probs=66.3

Q ss_pred             CCcEEEEEec--cCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc--CCCCceeEeecCCCCChhhhhh
Q 043301          140 QDVELRTIQE--RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET--GDQGSKVTISESYPYSDDTLAQ  215 (244)
Q Consensus       140 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~--~~~~~~~~i~~~~~~~~~~~~~  215 (244)
                      |++++.+.-.  ...|.++|-.|.+ |.++|.+|.+|||++         ..+.|.  .+++|+ +++..+|.|||   +
T Consensus         3 G~l~~sl~Y~~~~~~L~V~Vi~a~n-L~~~~~~~~~d~yVk---------~~llp~~~~~~kTk-v~~~~nP~fnE---~   68 (124)
T cd08389           3 GDLDVAFEYDPSARKLTVTVIRAQD-IPTKDRGGASSWQVH---------LVLLPSKKQRAKTK-VQRGPNPVFNE---T   68 (124)
T ss_pred             EEEEEEEEECCCCCEEEEEEEEecC-CCchhcCCCCCcEEE---------EEEccCCcceeecc-cccCCCCcccC---E
Confidence            5555555443  4568899999985 899999999999976         334333  345666 44458888887   6


Q ss_pred             hhhh-cCCCC-ccceeEEEEeccCccccc
Q 043301          216 FILR-LQNSL-RSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       216 ~~~~-~~~~~-~~~~~~~~~~~~~~~~~~  242 (244)
                      |.|. +.+++ .++.|.++|||||+.++|
T Consensus        69 F~f~~i~~~~l~~~~L~~~V~~~~~~~~~   97 (124)
T cd08389          69 FTFSRVEPEELNNMALRFRLYGVERMRKE   97 (124)
T ss_pred             EEECCCCHHHhccCEEEEEEEECCCcccC
Confidence            9998 66654 678999999999998876

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=98.91  E-value=7.2e-10  Score=89.48  Aligned_cols=80  Identities=10%  Similarity=0.117  Sum_probs=60.4

Q ss_pred             cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccc----cCCCCceeEeecCCCCChhhhhhhhhhcCCCCc
Q 043301          150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE----TGDQGSKVTISESYPYSDDTLAQFILRLQNSLR  225 (244)
Q Consensus       150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  225 (244)
                      .+.+.++|.+|. +|.++|.+|.+|||+++.         +.+    ...++|++.-.+.+|.|||   +|.|++..++.
T Consensus        13 ~~~L~V~vi~a~-~L~~~d~~g~~DPyV~v~---------l~~~~~~~~~~kT~v~~~t~nP~wnE---~F~f~i~~~~l   79 (135)
T cd08410          13 AGRLNVDIIRAK-QLLQTDMSQGSDPFVKIQ---------LVHGLKLIKTKKTSCMRGTIDPFYNE---SFSFKVPQEEL   79 (135)
T ss_pred             CCeEEEEEEEec-CCCcccCCCCCCeEEEEE---------EEcCCcccceEcCccccCCCCCccce---eEEEeCCHHHh
Confidence            345678999997 489999999999998743         221    1335666444567888888   69999977655


Q ss_pred             -cceeEEEEeccCccccc
Q 043301          226 -SKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       226 -~~~~~~~~~~~~~~~~~  242 (244)
                       +..|.|+|||||+.++|
T Consensus        80 ~~~~l~~~V~d~d~~~~~   97 (135)
T cd08410          80 ENVSLVFTVYGHNVKSSN   97 (135)
T ss_pred             CCCEEEEEEEeCCCCCCC
Confidence             56899999999998775

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=98.87  E-value=1.4e-09  Score=87.25  Aligned_cols=90  Identities=10%  Similarity=0.114  Sum_probs=64.8

Q ss_pred             CCcEEEEEe--ccCCcceeeecccccccccCCC-CcchhhHHHHhhhhccccccccc--CCCCceeEeecCCCCChhhhh
Q 043301          140 QDVELRTIQ--ERNPEDLTFHDVFSSFTEKDRN-QLDDITENIESEIAGIKKTLSET--GDQGSKVTISESYPYSDDTLA  214 (244)
Q Consensus       140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~n-~l~d~~~~~~~~~~~~~~~l~~~--~~~~~~~~i~~~~~~~~~~~~  214 (244)
                      |++++...-  +.+.+.++|-.|.+ |.++|.+ |..|||+++.         |.+.  .+.+|+++-.+.+|.|||   
T Consensus         3 G~l~~~l~y~~~~~~L~V~Vi~a~~-L~~~~~~~~~~DpyV~v~---------l~~~~~~~~kT~v~~~t~nP~wnE---   69 (128)
T cd08388           3 GTLFFSLRYNSEKKALLVNIIECRD-LPAMDEQSGTSDPYVKLQ---------LLPEKEHKVKTRVLRKTRNPVYDE---   69 (128)
T ss_pred             eEEEEEEEEECCCCEEEEEEEEeEC-CCCCCCCCCCcCCEEEEE---------EeCCcCceeeccEEcCCCCCceee---
Confidence            555555443  35578899999974 8999976 9999998743         3333  234677443578888888   


Q ss_pred             hhhh-hcCCCC-ccceeEEEEeccCccccc
Q 043301          215 QFIL-RLQNSL-RSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       215 ~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  242 (244)
                      +|.| .+.+++ .+..|.|+|||||+.+++
T Consensus        70 ~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d   99 (128)
T cd08388          70 TFTFYGIPYNQLQDLSLHFAVLSFDRYSRD   99 (128)
T ss_pred             EEEEcccCHHHhCCCEEEEEEEEcCCCCCC
Confidence            6998 566665 567899999999998775

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=98.87  E-value=1.2e-09  Score=86.78  Aligned_cols=75  Identities=12%  Similarity=0.239  Sum_probs=56.4

Q ss_pred             cceeeecccccccccC-CCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEE
Q 043301          153 EDLTFHDVFSSFTEKD-RNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSV  231 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~-~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (244)
                      +.+.|-+|. +|.+++ .+|.+|||++++         +..+...+|++.-.+.+|.|||   +|.|.+..+  .+.|.|
T Consensus         2 l~v~v~~a~-~L~~~~~~~g~sDpYv~v~---------l~~~~~~kT~v~~kt~~P~WnE---~F~f~v~~~--~~~l~~   66 (121)
T cd08401           2 LKIKIGEAK-NLPPRSGPNKMRDCYCTVN---------LDQEEVFRTKTVEKSLCPFFGE---DFYFEIPRT--FRHLSF   66 (121)
T ss_pred             eEEEEEEcc-CCCCCCCCCCCcCcEEEEE---------ECCccEEEeeEEECCCCCccCC---eEEEEcCCC--CCEEEE
Confidence            347788997 478874 789999998843         3222234677555688899888   699998753  479999


Q ss_pred             EEeccCccccc
Q 043301          232 EFWDLDDVLVN  242 (244)
Q Consensus       232 ~~~~~~~~~~~  242 (244)
                      +|||||+.+++
T Consensus        67 ~v~d~~~~~~~   77 (121)
T cd08401          67 YIYDRDVLRRD   77 (121)
T ss_pred             EEEECCCCCCC
Confidence            99999998775

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=98.85  E-value=1.7e-09  Score=87.04  Aligned_cols=90  Identities=14%  Similarity=0.147  Sum_probs=65.4

Q ss_pred             CCcEEEEEe--ccCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhh
Q 043301          140 QDVELRTIQ--ERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTL  213 (244)
Q Consensus       140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~  213 (244)
                      |++.+...-  ..+.|.+.|.+|. +|.++|.+|.+|||+++.         |.+.    .+.+|++.-.+.+|.|||  
T Consensus         2 G~l~~~l~y~~~~~~L~V~vi~a~-~L~~~d~~g~~Dpyv~v~---------l~~~~~~~~~~kT~v~k~t~nP~w~e--   69 (136)
T cd08404           2 GELLLSLCYQPTTNRLTVVVLKAR-HLPKMDVSGLADPYVKVN---------LYYGKKRISKKKTHVKKCTLNPVFNE--   69 (136)
T ss_pred             CeEEEEEEEeCCCCeEEEEEEEee-CCCccccCCCCCeEEEEE---------EEcCCceeeeEcCccccCCCCCccCc--
Confidence            444554433  3557889999997 489999999999998744         2221    234566333578888888  


Q ss_pred             hhhhhhcCCCC-ccceeEEEEeccCccccc
Q 043301          214 AQFILRLQNSL-RSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       214 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  242 (244)
                       +|.|.+.... .+..|.|+|||||+.++|
T Consensus        70 -~F~f~v~~~~~~~~~l~~~v~d~d~~~~~   98 (136)
T cd08404          70 -SFVFDIPSEELEDISVEFLVLDSDRVTKN   98 (136)
T ss_pred             -eEEEECCHHHhCCCEEEEEEEECCCCCCC
Confidence             6999997664 467889999999998876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=98.85  E-value=2.2e-09  Score=84.46  Aligned_cols=90  Identities=14%  Similarity=0.192  Sum_probs=64.5

Q ss_pred             CCcEEEEEec--cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccc----cCCCCceeEeecCCCCChhhh
Q 043301          140 QDVELRTIQE--RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE----TGDQGSKVTISESYPYSDDTL  213 (244)
Q Consensus       140 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~----~~~~~~~~~i~~~~~~~~~~~  213 (244)
                      |++++...-.  .+.+.++|..|. +|.++|.+|..|||+++.         +.+    ...++|++.-.+.+|.|||  
T Consensus         3 G~l~~~l~~~~~~~~L~V~vi~a~-~L~~~~~~~~~dpyv~v~---------l~~~~~~~~~~kT~v~~~t~nP~wne--   70 (125)
T cd04031           3 GRIQIQLWYDKVTSQLIVTVLQAR-DLPPRDDGSLRNPYVKVY---------LLPDRSEKSKRRTKTVKKTLNPEWNQ--   70 (125)
T ss_pred             EEEEEEEEEeCCCCEEEEEEEEec-CCCCcCCCCCCCCEEEEE---------EccCCCccccccccccCCCCCCcccc--
Confidence            3444443332  355779999997 589999999999998844         322    2455677444588888888  


Q ss_pred             hhhhhhcCCC--CccceeEEEEeccCccccc
Q 043301          214 AQFILRLQNS--LRSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       214 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  242 (244)
                       +|.|.+.+.  ..++.|.|+|||+|+.+++
T Consensus        71 -~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~  100 (125)
T cd04031          71 -TFEYSNVRRETLKERTLEVTVWDYDRDGEN  100 (125)
T ss_pred             -EEEEcccCHHHhCCCEEEEEEEeCCCCCCC
Confidence             699986553  3578999999999987654

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=98.83  E-value=2.3e-09  Score=85.56  Aligned_cols=75  Identities=11%  Similarity=0.018  Sum_probs=54.9

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhccccccc----ccCC--CCceeEee-cCCCCChhhhhhhhhhcCCC--
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLS----ETGD--QGSKVTIS-ESYPYSDDTLAQFILRLQNS--  223 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~----~~~~--~~~~~~i~-~~~~~~~~~~~~~~~~~~~~--  223 (244)
                      |++.|-+|.+ |.++| .|.+|||+++.         |.    ++.+  ++|+ ++. +.||.|||   +|.|.+.+.  
T Consensus         2 L~V~Vi~A~~-L~~~d-~g~~DPYVkV~---------l~g~~~~~k~~k~kTk-v~~~tlnPvwNE---~f~F~v~~~~~   66 (120)
T cd08395           2 VTVKVVAAND-LKWQT-TGMFRPFVEVN---------LIGPHLSDKKRKFATK-SKNNNWSPKYNE---TFQFILGNEDD   66 (120)
T ss_pred             EEEEEEECcC-CCccc-CCCCCCEEEEE---------EecCCCcccccEeeeE-EecCCCCCccCc---EEEEEeeCcCC
Confidence            6789999984 78888 59999998843         32    2333  3455 334 45899988   699999864  


Q ss_pred             CccceeEEEEeccCccccc
Q 043301          224 LRSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~  242 (244)
                      ..+.-|.|+|||||+.+.|
T Consensus        67 ~~~~~L~~~V~D~d~~~~d   85 (120)
T cd08395          67 PESYELHICVKDYCFARDD   85 (120)
T ss_pred             CceeEEEEEEEEecccCCC
Confidence            4556799999999987655

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=98.82  E-value=2.1e-09  Score=84.83  Aligned_cols=90  Identities=13%  Similarity=0.142  Sum_probs=65.7

Q ss_pred             CCcEEEEEe--ccCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc--CCCCceeEeecCCCCChhhhhh
Q 043301          140 QDVELRTIQ--ERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET--GDQGSKVTISESYPYSDDTLAQ  215 (244)
Q Consensus       140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~--~~~~~~~~i~~~~~~~~~~~~~  215 (244)
                      |++++...-  ..+.+.++|-.|.+ |.++|.+|..|||+++.         +.+.  ...+|+..-.+.+|.|||   +
T Consensus         3 G~l~~~l~y~~~~~~L~V~v~~a~~-L~~~d~~~~~dpyv~v~---------l~~~~~~~~kT~v~~~t~nP~wne---~   69 (124)
T cd08385           3 GKLQFSLDYDFQSNQLTVGIIQAAD-LPAMDMGGTSDPYVKVY---------LLPDKKKKFETKVHRKTLNPVFNE---T   69 (124)
T ss_pred             cEEEEEEEEeCCCCEEEEEEEEeeC-CCCccCCCCCCCEEEEE---------EEcCCCCceecccCcCCCCCceee---e
Confidence            555555544  35678899999974 89999999999998743         3332  234666344477888888   6


Q ss_pred             hhhhcCCCC-ccceeEEEEeccCccccc
Q 043301          216 FILRLQNSL-RSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       216 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~  242 (244)
                      |.|.+...+ .++.|.|+|||||+.+++
T Consensus        70 f~f~i~~~~l~~~~l~~~V~d~d~~~~~   97 (124)
T cd08385          70 FTFKVPYSELGNKTLVFSVYDFDRFSKH   97 (124)
T ss_pred             EEEeCCHHHhCCCEEEEEEEeCCCCCCC
Confidence            999987654 457899999999988764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=98.82  E-value=2.9e-09  Score=85.51  Aligned_cols=96  Identities=11%  Similarity=0.111  Sum_probs=67.6

Q ss_pred             CCcEEEEEec--cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhh
Q 043301          140 QDVELRTIQE--RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFI  217 (244)
Q Consensus       140 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~  217 (244)
                      |.+.+.+...  .+.+.+.|-.|. .|.+++.+|..|||+++.--  .-. .......++|+.+-.+.+|.|||   +|.
T Consensus         3 G~l~~~l~y~~~~~~L~V~Vi~A~-~L~~~~~~g~~dPyv~v~l~--~~~-~~~~~~~~kT~v~~~t~nP~wnE---~f~   75 (133)
T cd04009           3 GVLTVKAYYRASEQSLRVEILNAR-NLLPLDSNGSSDPFVKVELL--PRH-LFPDVPTPKTQVKKKTLFPLFDE---SFE   75 (133)
T ss_pred             eEEEEEEEEcCCCCEEEEEEEEee-CCCCcCCCCCCCCEEEEEEE--CCC-cCccccccccccCcCCCCCccCC---EEE
Confidence            5556665554  356889999997 48999999999999874410  000 00113467777555577888887   699


Q ss_pred             hhcCCC---CccceeEEEEeccCccccc
Q 043301          218 LRLQNS---LRSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       218 ~~~~~~---~~~~~~~~~~~~~~~~~~~  242 (244)
                      |.+...   +.+..|.|+|||+|+.+++
T Consensus        76 f~i~~~~~~~~~~~l~~~V~d~d~~~~d  103 (133)
T cd04009          76 FNVPPEQCSVEGALLLFTVKDYDLLGSN  103 (133)
T ss_pred             EEechhhcccCCCEEEEEEEecCCCCCC
Confidence            998764   4678999999999998754

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=98.81  E-value=2.1e-09  Score=85.28  Aligned_cols=75  Identities=11%  Similarity=0.102  Sum_probs=57.7

Q ss_pred             ceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCC----Ccccee
Q 043301          154 DLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNS----LRSKNM  229 (244)
Q Consensus       154 ~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~  229 (244)
                      .++|-+|.+ |.++|.+|.+|||++++         |.. .+.+|++.-.+++|.|||   +|.|.+...    ..++.|
T Consensus         2 ~V~V~~A~~-L~~~d~~g~~dpYv~v~---------l~~-~~~kT~v~~~t~nP~Wne---~f~F~v~~~~~~~~~~~~l   67 (126)
T cd08682           2 QVTVLQARG-LLCKGKSGTNDAYVIIQ---------LGK-EKYSTSVKEKTTSPVWKE---ECSFELPGLLSGNGNRATL   67 (126)
T ss_pred             EEEEEECcC-CcCCCCCcCCCceEEEE---------ECC-eeeeeeeecCCCCCEeCc---eEEEEecCcccCCCcCCEE
Confidence            478999985 89999999999998854         332 345677444578888888   699988763    467889


Q ss_pred             EEEEeccCccccc
Q 043301          230 SVEFWDLDDVLVN  242 (244)
Q Consensus       230 ~~~~~~~~~~~~~  242 (244)
                      .|+|||||+.+++
T Consensus        68 ~~~v~d~~~~~~d   80 (126)
T cd08682          68 QLTVMHRNLLGLD   80 (126)
T ss_pred             EEEEEEccccCCC
Confidence            9999999987653

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=98.80  E-value=2.1e-09  Score=83.60  Aligned_cols=76  Identities=12%  Similarity=0.162  Sum_probs=59.1

Q ss_pred             cceeeecccccccccC-CCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCC-hhhhhhhhhhcCCCC-cccee
Q 043301          153 EDLTFHDVFSSFTEKD-RNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYS-DDTLAQFILRLQNSL-RSKNM  229 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~-~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~-~~~~~  229 (244)
                      |.++|.+|.+ |-+|| .+|.+|||+++.         +.. ...+|++.-.+.+|.| ||   +|.|.+..++ .++.|
T Consensus         1 l~V~v~~a~~-L~~~d~~~~~~Dpyv~v~---------~~~-~~~kT~v~~~~~nP~W~ne---~f~f~i~~~~l~~~~l   66 (110)
T cd08688           1 LKVRVVAARD-LPVMDRSSDLTDAFVEVK---------FGS-TTYKTDVVKKSLNPVWNSE---WFRFEVDDEELQDEPL   66 (110)
T ss_pred             CEEEEEEEEC-CCccccCCCCCCceEEEE---------ECC-eeEecceecCCCCCcccCc---EEEEEcChHHcCCCeE
Confidence            4588999985 88899 589999998754         332 4567774445788888 77   6999988765 46899


Q ss_pred             EEEEeccCccccc
Q 043301          230 SVEFWDLDDVLVN  242 (244)
Q Consensus       230 ~~~~~~~~~~~~~  242 (244)
                      .|+|||||+.++|
T Consensus        67 ~i~V~d~d~~~~~   79 (110)
T cd08688          67 QIRVMDHDTYSAN   79 (110)
T ss_pred             EEEEEeCCCCCCC
Confidence            9999999998765

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=98.80  E-value=4e-10  Score=108.85  Aligned_cols=99  Identities=25%  Similarity=0.513  Sum_probs=78.1

Q ss_pred             CCCCCCEeeeeccCCCcccccccccccCCCCC---cEEeCCCCCccccccccCCCc------------------------
Q 043301           14 SHMHYLIFNENEVGHDDVVIICDICETSLQGP---AYGCGTCEFSIHKSCAELPLK------------------------   66 (244)
Q Consensus        14 sHpH~L~L~~~~~~~~~~~~~C~~C~~~i~g~---~Y~C~~C~F~lH~~Ca~~p~~------------------------   66 (244)
                      .|||.|.. ..    +..+++||.||+.++|.   +.+|..|+..+|++||...+.                        
T Consensus       143 i~PH~l~v-hS----Y~~PtFCD~CGEmL~GLvrQGlKC~gCglNyHKRCa~kipNNCsG~r~rr~sa~~l~~~~s~~l~  217 (888)
T KOG4236|consen  143 IRPHTLFV-HS----YKAPTFCDFCGEMLFGLVRQGLKCEGCGLNYHKRCAFKIPNNCSGVRKRRLSAVSLQPSRSNRLN  217 (888)
T ss_pred             eecceeee-ec----ccCchHHHHHHHHHHHHHHccccccCCCCcHhhhhhhcCCCCCCcccccCCCCCCCCCCCccccc
Confidence            45588876 23    46789999999999984   899999999999999975210                        


Q ss_pred             ----------------------------CCC----C-----------CCCCcceEeec-CcccccccccCCCCe---eEE
Q 043301           67 ----------------------------IDH----P-----------FHCHPLTLSKT-NHHRCDACLDECSGM---AYR   99 (244)
Q Consensus        67 ----------------------------i~h----p-----------~H~H~L~L~~~-~~~~Cd~Cg~~~~g~---~Y~   99 (244)
                                                  +..    |           .-+|.|..++| .++.|.+|.+.+.|+   +++
T Consensus       218 ~s~~~p~~p~~~~~pst~~~~~~~p~~~~~S~sgrpi~~ek~~~~rvkvPHTf~vHSY~rpTVCq~CkkLLkGL~rQGlq  297 (888)
T KOG4236|consen  218 LSPSSPLEPLLPARPSTELGGPREPSSAILSWSGRPIWMEKMLMSRVKVPHTFIVHSYTRPTVCQYCKKLLKGLFRQGLQ  297 (888)
T ss_pred             cCCCCCCCccccCCCcccccCCCCCCcccccccCCCchhhhhhhhcccCCeeEEEeeccCchHHHHHHHHHHHHHhcCcc
Confidence                                        000    1           12577777777 889999999998776   599


Q ss_pred             cCCccceeccccccCcCc
Q 043301          100 CHECCYNLHYHCTALKPS  117 (244)
Q Consensus       100 C~~Cd~~lH~~Ca~~p~~  117 (244)
                      |..|.|+.|++|+...+.
T Consensus       298 CkDCk~NcHkrCa~~v~~  315 (888)
T KOG4236|consen  298 CKDCKFNCHKRCAMKVPN  315 (888)
T ss_pred             cccCCcchhhhhhhhccc
Confidence            999999999999988765

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=98.78  E-value=5.1e-09  Score=82.68  Aligned_cols=90  Identities=12%  Similarity=0.200  Sum_probs=65.6

Q ss_pred             CCcEEEEEec--cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccc--cCCCCceeEeecCCCCChhhhhh
Q 043301          140 QDVELRTIQE--RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE--TGDQGSKVTISESYPYSDDTLAQ  215 (244)
Q Consensus       140 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~--~~~~~~~~~i~~~~~~~~~~~~~  215 (244)
                      |++++.....  .+.+.+.|-+|. +|.++|.+|.+|||+++.         +.+  ...++|++.-.+.+|.|||   +
T Consensus         3 G~l~~sl~y~~~~~~L~V~v~~a~-~L~~~d~~g~~dpyv~v~---------l~~~~~~~~kT~v~~~t~~P~wne---~   69 (124)
T cd08387           3 GELHFSLEYDKDMGILNVKLIQAR-NLQPRDFSGTADPYCKVR---------LLPDRSNTKQSKIHKKTLNPEFDE---S   69 (124)
T ss_pred             CEEEEEEEECCCCCEEEEEEEEee-CCCCCCCCCCCCCeEEEE---------EecCCCCcEeCceEcCCCCCCccc---E
Confidence            4444444332  345779999997 489999999999998744         322  2345677444588888888   6


Q ss_pred             hhhhcCCCC-ccceeEEEEeccCccccc
Q 043301          216 FILRLQNSL-RSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       216 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~  242 (244)
                      |.|.+..++ .++.|.|+|||+|+.++|
T Consensus        70 f~f~v~~~~l~~~~l~i~V~d~~~~~~~   97 (124)
T cd08387          70 FVFEVPPQELPKRTLEVLLYDFDQFSRD   97 (124)
T ss_pred             EEEeCCHHHhCCCEEEEEEEECCCCCCC
Confidence            999988765 457899999999988766

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=98.78  E-value=2.8e-09  Score=83.93  Aligned_cols=75  Identities=17%  Similarity=0.279  Sum_probs=56.4

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE  232 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (244)
                      |.+.|.+|. +|.++|.+|.+|||++++         +......+|+++..+.+|.|||   .|.|.+..  .+..|.||
T Consensus         2 L~v~v~~a~-~L~~~d~~g~~Dpyv~v~---------~~~~~~~kT~~~~~t~nP~Wne---~f~f~v~~--~~~~l~~~   66 (121)
T cd04042           2 LDIHLKEGR-NLAARDRGGTSDPYVKFK---------YGGKTVYKSKTIYKNLNPVWDE---KFTLPIED--VTQPLYIK   66 (121)
T ss_pred             eEEEEEEee-CCCCcCCCCCCCCeEEEE---------ECCEEEEEeeeccCCCCCccce---eEEEEecC--CCCeEEEE
Confidence            458899997 589999999999998754         2222334666455577888887   69988754  35789999


Q ss_pred             EeccCccccc
Q 043301          233 FWDLDDVLVN  242 (244)
Q Consensus       233 ~~~~~~~~~~  242 (244)
                      |||||+.+++
T Consensus        67 v~D~d~~~~~   76 (121)
T cd04042          67 VFDYDRGLTD   76 (121)
T ss_pred             EEeCCCCCCC
Confidence            9999998654

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=98.77  E-value=3.3e-09  Score=82.60  Aligned_cols=78  Identities=12%  Similarity=0.198  Sum_probs=58.0

Q ss_pred             CcceeeecccccccccCCC-CcchhhHHHHhhhhcccccccc--cCCCCceeEeecCCCCChhhhhhhhhhcCCCC--cc
Q 043301          152 PEDLTFHDVFSSFTEKDRN-QLDDITENIESEIAGIKKTLSE--TGDQGSKVTISESYPYSDDTLAQFILRLQNSL--RS  226 (244)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~n-~l~d~~~~~~~~~~~~~~~l~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~  226 (244)
                      .|.++|-.|. +|.++|.+ |.+|||+++.         +.+  ....+|+.+-.+.+|.|||   .|.|.+.+.+  .+
T Consensus         2 ~L~V~v~~a~-~L~~~d~~~~~~Dpyv~v~---------~~~~~~~~~kT~v~~~t~nP~Wne---~f~f~~~~~~~~~~   68 (111)
T cd04041           2 VLVVTIHRAT-DLPKADFGTGSSDPYVTAS---------FAKFGKPLYSTRIIRKDLNPVWEE---TWFVLVTPDEVKAG   68 (111)
T ss_pred             EEEEEEEEee-CCCcccCCCCCCCccEEEE---------EccCCCccEeeeeECCCCCCccce---eEEEEeCchhccCC
Confidence            3568899997 48999998 9999998854         221  2235677444577888888   5888777653  56


Q ss_pred             ceeEEEEeccCccccc
Q 043301          227 KNMSVEFWDLDDVLVN  242 (244)
Q Consensus       227 ~~~~~~~~~~~~~~~~  242 (244)
                      +.|.|+|||+|+.+.|
T Consensus        69 ~~l~~~V~d~d~~~~d   84 (111)
T cd04041          69 ERLSCRLWDSDRFTAD   84 (111)
T ss_pred             CEEEEEEEeCCCCCCC
Confidence            7899999999998764

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=98.77  E-value=4.1e-09  Score=82.64  Aligned_cols=80  Identities=10%  Similarity=0.213  Sum_probs=61.0

Q ss_pred             cCCcceeeecccccccccC-CCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhhhhhhhhcCCCC
Q 043301          150 RNPEDLTFHDVFSSFTEKD-RNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTLAQFILRLQNSL  224 (244)
Q Consensus       150 ~~~~~~~v~~~~~~~~~~~-~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  224 (244)
                      .+.+.++|-+|. +|.+++ ..|..|||+++.         +.+.    .+++|++.-.+.+|.|||   +|.|.+..++
T Consensus        13 ~~~L~V~v~~a~-~L~~~~~~~~~~dpyv~v~---------l~~~~~~~~~~kT~v~~~t~~P~wne---~f~f~i~~~~   79 (123)
T cd08521          13 TGSLEVHIKECR-NLAYADEKKKRSNPYVKVY---------LLPDKSKQSKRKTSVKKNTTNPVFNE---TLKYHISKSQ   79 (123)
T ss_pred             CCEEEEEEEEec-CCCCcCCCCCCCCcEEEEE---------EecCCCcCceeeccccCCCCCCcccc---eEEEeCCHHH
Confidence            456779999997 489999 889999998843         2222    345677444578888888   6999988765


Q ss_pred             c-cceeEEEEeccCccccc
Q 043301          225 R-SKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       225 ~-~~~~~~~~~~~~~~~~~  242 (244)
                      . .+.|.|+|||+|+.++|
T Consensus        80 l~~~~l~i~v~d~~~~~~~   98 (123)
T cd08521          80 LETRTLQLSVWHHDRFGRN   98 (123)
T ss_pred             hCCCEEEEEEEeCCCCcCC
Confidence            3 67899999999988775

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=98.76  E-value=4.5e-09  Score=85.18  Aligned_cols=79  Identities=10%  Similarity=0.105  Sum_probs=62.6

Q ss_pred             cCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhhhhhhhhcCCCCc
Q 043301          150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTLAQFILRLQNSLR  225 (244)
Q Consensus       150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  225 (244)
                      .+.|.++|-+|.+ |.++| .+..|||++         ..|.+.    .+++|++.-.+.+|.|||   +|.|++.+++.
T Consensus        14 ~~~L~V~V~~a~n-L~~~~-~~~~d~yVk---------v~l~~~~~~~~~~kT~v~~~~~nP~fnE---~F~f~i~~~~l   79 (137)
T cd08409          14 LNRLTVVVLRARG-LRQLD-HAHTSVYVK---------VSLMIHNKVVKTKKTEVVDGAASPSFNE---SFSFKVTSRQL   79 (137)
T ss_pred             CCeEEEEEEEecC-CCccc-CCCCCeEEE---------EEEEECCEEeeeeecccEeCCCCCcccc---eEEEECCHHHh
Confidence            4567899999985 89999 888999988         444443    355777555688999998   69999988766


Q ss_pred             c-ceeEEEEeccCccccc
Q 043301          226 S-KNMSVEFWDLDDVLVN  242 (244)
Q Consensus       226 ~-~~~~~~~~~~~~~~~~  242 (244)
                      + ++|.|+|||.|+.++|
T Consensus        80 ~~~~L~~~V~~~~~~~~~   97 (137)
T cd08409          80 DTASLSLSVMQSGGVRKS   97 (137)
T ss_pred             CccEEEEEEEeCCCCCCc
Confidence            5 7999999999987765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=98.76  E-value=4e-09  Score=82.32  Aligned_cols=76  Identities=8%  Similarity=0.023  Sum_probs=57.2

Q ss_pred             cceeeecccccccccCC---CC-cchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccce
Q 043301          153 EDLTFHDVFSSFTEKDR---NQ-LDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKN  228 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~---n~-l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (244)
                      |.++|.+|.+ |.++|.   +| -.|||+++.         +. ...++|++.-.+.+|.|||   .|.|.+.+.+.+..
T Consensus         3 l~v~v~~A~~-L~~~~~~~~~~~~~DPYv~v~---------~~-~~~~kT~v~~~t~nPvWne---~f~f~v~~~~~~~~   68 (108)
T cd04039           3 VFMEIKSITD-LPPLKNMTRTGFDMDPFVIIS---------FG-RRVFRTSWRRHTLNPVFNE---RLAFEVYPHEKNFD   68 (108)
T ss_pred             EEEEEEeeeC-CCCccccCCCCCccCceEEEE---------EC-CEeEeeeeecCCCCCcccc---eEEEEEeCccCCCE
Confidence            5588999974 788872   22 379998854         22 2345677444477888887   69999988888889


Q ss_pred             eEEEEeccCccccc
Q 043301          229 MSVEFWDLDDVLVN  242 (244)
Q Consensus       229 ~~~~~~~~~~~~~~  242 (244)
                      |.|+|||||+.++|
T Consensus        69 L~~~V~D~d~~~~d   82 (108)
T cd04039          69 IQFKVLDKDKFSFN   82 (108)
T ss_pred             EEEEEEECCCCCCC
Confidence            99999999998775

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=98.75  E-value=5e-09  Score=83.69  Aligned_cols=80  Identities=18%  Similarity=0.223  Sum_probs=60.9

Q ss_pred             cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccc----cCCCCceeEeecCCCCChhhhhhhhhhcCCCCc
Q 043301          150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE----TGDQGSKVTISESYPYSDDTLAQFILRLQNSLR  225 (244)
Q Consensus       150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  225 (244)
                      .+.|.++|-.|. +|.++|.+|.+|||+++.         +.+    ....+|++.-.+.+|.|||   +|.|.+..++.
T Consensus        12 ~~~L~V~Vi~a~-~L~~~d~~~~~DpyV~v~---------l~~~~~~~~~~kT~v~~~t~nP~wne---~f~f~~~~~~l   78 (133)
T cd08384          12 RRGLIVGIIRCV-NLAAMDANGYSDPFVKLY---------LKPDAGKKSKHKTQVKKKTLNPEFNE---EFFYDIKHSDL   78 (133)
T ss_pred             CCEEEEEEEEEc-CCCCcCCCCCCCcEEEEE---------EEcCCCccCCceeeeEeccCCCCccc---EEEEECCHHHh
Confidence            445668899997 489999999999998744         322    2345677444588888888   69999887654


Q ss_pred             -cceeEEEEeccCccccc
Q 043301          226 -SKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       226 -~~~~~~~~~~~~~~~~~  242 (244)
                       ++.|.|+|||+|+.+++
T Consensus        79 ~~~~l~~~V~d~d~~~~~   96 (133)
T cd08384          79 AKKTLEITVWDKDIGKSN   96 (133)
T ss_pred             CCCEEEEEEEeCCCCCCc
Confidence             58999999999987654

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=98.74  E-value=6.3e-09  Score=86.91  Aligned_cols=79  Identities=14%  Similarity=0.154  Sum_probs=60.2

Q ss_pred             CCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccc----cCCCCceeEeecCCCCChhhhhhhhhhcC-CC-C
Q 043301          151 NPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE----TGDQGSKVTISESYPYSDDTLAQFILRLQ-NS-L  224 (244)
Q Consensus       151 ~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~-~  224 (244)
                      +.|.++|.+|.+ |-++|.+|.+|||+++.         |.+    ..+++|+++-.+.+|.|||   +|.|.+. ++ .
T Consensus        27 g~L~V~Vi~A~n-L~~~d~~g~~DPYVkv~---------l~~~~~~~~~~kT~vi~~t~nP~WnE---~f~f~~~~~~~l   93 (162)
T cd04020          27 GELHVWVKEAKN-LPALKSGGTSDSFVKCY---------LLPDKSKKSKQKTPVVKKSVNPVWNH---TFVYDGVSPEDL   93 (162)
T ss_pred             ceEEEEEEeeeC-CCCCCCCCCCCCEEEEE---------EEcCCCCCcceeCCccCCCCCCCCCC---EEEEecCCHHHh
Confidence            457799999984 89999999999998843         322    2456787555578899998   6999853 33 3


Q ss_pred             ccceeEEEEeccCccccc
Q 043301          225 RSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~  242 (244)
                      .++.|.|+|||||+.+++
T Consensus        94 ~~~~L~i~V~d~d~~~~d  111 (162)
T cd04020          94 SQACLELTVWDHDKLSSN  111 (162)
T ss_pred             CCCEEEEEEEeCCCCCCC
Confidence            568899999999998765

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=98.71  E-value=6.5e-09  Score=86.18  Aligned_cols=76  Identities=12%  Similarity=0.085  Sum_probs=56.6

Q ss_pred             cceeeecccccccccCCCC--------------cchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhh
Q 043301          153 EDLTFHDVFSSFTEKDRNQ--------------LDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFIL  218 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~--------------l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~  218 (244)
                      +.++|-+|. .|.+||..+              ++|||++++         +... +++|+++-.+.+|.|||   +|.|
T Consensus         2 ~~V~V~~A~-dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~---------~~g~-~~kT~v~~~t~nPvWNE---~f~f   67 (151)
T cd04018           2 FIFKIYRAE-DLPQMDSGIMANVKKAFLGEKKELVDPYVEVS---------FAGQ-KVKTSVKKNSYNPEWNE---QIVF   67 (151)
T ss_pred             eEEEEEEeC-CCCccChhhhccceeccccCCCCCcCcEEEEE---------ECCE-eeecceEcCCCCCCcce---EEEE
Confidence            457788887 478888654              789998744         3332 34677555577888888   6999


Q ss_pred             hcCCCCccceeEEEEeccCccccc
Q 043301          219 RLQNSLRSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~  242 (244)
                      .+.-.+.+.+|.|+|||||..++|
T Consensus        68 ~v~~p~~~~~l~~~v~D~d~~~~d   91 (151)
T cd04018          68 PEMFPPLCERIKIQIRDWDRVGND   91 (151)
T ss_pred             EeeCCCcCCEEEEEEEECCCCCCC
Confidence            876556678999999999998764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=98.69  E-value=1.5e-08  Score=80.63  Aligned_cols=93  Identities=17%  Similarity=0.246  Sum_probs=71.3

Q ss_pred             CCcEEEEEeccCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhh
Q 043301          140 QDVELRTIQERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILR  219 (244)
Q Consensus       140 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  219 (244)
                      |.+.+.+..++..+.+++-+|. +|.++|.+|..|||+.++-     .........++|+.+-.+.+|.|||   +|.|.
T Consensus         2 g~~~~~~~~~~~~l~v~i~~a~-nL~~~~~~~~~dpyv~v~~-----~~~~~~~~~~rT~v~~~~~~P~wne---~f~~~   72 (131)
T cd04026           2 GRIYLKISVKDNKLTVEVREAK-NLIPMDPNGLSDPYVKLKL-----IPDPKNETKQKTKTIKKTLNPVWNE---TFTFD   72 (131)
T ss_pred             cEEEEEEEECCCEEEEEEEEee-CCCCcCCCCCCCCcEEEEE-----EcCCCCCceecceeecCCCCCCccc---eEEEe
Confidence            7788888888999999999997 4888999999999987441     0000012346777544477788887   69999


Q ss_pred             cCCCCccceeEEEEeccCcccc
Q 043301          220 LQNSLRSKNMSVEFWDLDDVLV  241 (244)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~  241 (244)
                      +.+++.++.|.|+|||+|....
T Consensus        73 ~~~~~~~~~l~v~v~d~~~~~~   94 (131)
T cd04026          73 LKPADKDRRLSIEVWDWDRTTR   94 (131)
T ss_pred             CCchhcCCEEEEEEEECCCCCC
Confidence            9988888999999999987643

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=98.67  E-value=1.5e-08  Score=81.39  Aligned_cols=80  Identities=14%  Similarity=0.123  Sum_probs=60.2

Q ss_pred             cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccc----cCCCCceeEeecCCCCChhhhhhhhhhcCCCCc
Q 043301          150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE----TGDQGSKVTISESYPYSDDTLAQFILRLQNSLR  225 (244)
Q Consensus       150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  225 (244)
                      .+.|.++|-+|. +|.++|.+|.+|||+++.         |.+    ....+|+++-.+.+|.|||   +|.|.+..++.
T Consensus        14 ~~~L~v~vi~a~-~L~~~~~~g~~dpyV~v~---------l~~~~~~~~~~kT~v~~~t~~P~wne---~F~f~i~~~~~   80 (136)
T cd08405          14 ANRITVNIIKAR-NLKAMDINGTSDPYVKVW---------LMYKDKRVEKKKTVIKKRTLNPVFNE---SFIFNIPLERL   80 (136)
T ss_pred             CCeEEEEEEEee-CCCccccCCCCCceEEEE---------EEeCCCccccccCcceeCCCCCcccc---eEEEeCCHHHh
Confidence            456789999997 489999999999998743         322    1345677444577888887   69999876654


Q ss_pred             -cceeEEEEeccCccccc
Q 043301          226 -SKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       226 -~~~~~~~~~~~~~~~~~  242 (244)
                       +..|.|+|||+|+.++|
T Consensus        81 ~~~~l~~~v~d~~~~~~~   98 (136)
T cd08405          81 RETTLIITVMDKDRLSRN   98 (136)
T ss_pred             CCCEEEEEEEECCCCCCC
Confidence             67899999999987764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=98.67  E-value=1.4e-08  Score=81.51  Aligned_cols=80  Identities=15%  Similarity=0.199  Sum_probs=59.8

Q ss_pred             cCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhhhhhhhhcCCCCc
Q 043301          150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTLAQFILRLQNSLR  225 (244)
Q Consensus       150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  225 (244)
                      .+.+.+.|-+|.+ |.++|.+|.+|||+++.         +.+.    ..++|+..-.+.+|.|||   +|.|.+..+..
T Consensus        14 ~~~l~V~Vi~a~~-L~~~d~~g~~dpyv~v~---------l~~~~~~~~~~kT~v~~~t~nP~wne---~f~f~i~~~~l   80 (136)
T cd08402          14 AGKLTVVILEAKN-LKKMDVGGLSDPYVKIH---------LMQNGKRLKKKKTTIKKRTLNPYYNE---SFSFEVPFEQI   80 (136)
T ss_pred             CCeEEEEEEEeeC-CCcccCCCCCCCeEEEE---------EEECCcccceeeccceeCCCCCcccc---eEEEECCHHHh
Confidence            3456788999974 88999999999998744         2221    244566444577888888   69999876643


Q ss_pred             -cceeEEEEeccCccccc
Q 043301          226 -SKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       226 -~~~~~~~~~~~~~~~~~  242 (244)
                       +..|.|+|||+|+.++|
T Consensus        81 ~~~~l~~~v~d~~~~~~~   98 (136)
T cd08402          81 QKVHLIVTVLDYDRIGKN   98 (136)
T ss_pred             CCCEEEEEEEeCCCCCCC
Confidence             45799999999998765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=98.67  E-value=1.5e-08  Score=81.14  Aligned_cols=79  Identities=14%  Similarity=0.129  Sum_probs=58.5

Q ss_pred             CCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhhhhhhhhcCCCCc-
Q 043301          151 NPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTLAQFILRLQNSLR-  225 (244)
Q Consensus       151 ~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-  225 (244)
                      +.|.++|.+|. +|.++|.+|.+|||+++.         |.+.    ..++|++.-.+.+|.|||   +|.|.+.++.. 
T Consensus        14 ~~L~V~v~~A~-~L~~~d~~g~~dpyvkv~---------l~~~~~~~~~~kT~v~~~t~nP~wne---~f~f~i~~~~~~   80 (134)
T cd08403          14 GRLTLTIIKAR-NLKAMDITGFSDPYVKVS---------LMCEGRRLKKKKTSVKKNTLNPTYNE---ALVFDVPPENVD   80 (134)
T ss_pred             CEEEEEEEEee-CCCccccCCCCCceEEEE---------EEeCCcccceecCCcccCCCCCcccc---eEEEECCHHHhC
Confidence            44668999997 589999999999998743         3222    244666333467888888   69999876644 


Q ss_pred             cceeEEEEeccCccccc
Q 043301          226 SKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       226 ~~~~~~~~~~~~~~~~~  242 (244)
                      +..|.|+|||+|+.++|
T Consensus        81 ~~~l~~~v~d~~~~~~~   97 (134)
T cd08403          81 NVSLIIAVVDYDRVGHN   97 (134)
T ss_pred             CCEEEEEEEECCCCCCC
Confidence            45799999999998765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=98.66  E-value=8.9e-09  Score=80.13  Aligned_cols=75  Identities=24%  Similarity=0.267  Sum_probs=57.2

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE  232 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (244)
                      +++.|.+|. +|-++|.+|.+|||+++.         +. ..+.+|+..-.+.+|.|||   +|.|.+.+. .++.|.|+
T Consensus         2 ~~V~v~~a~-~L~~~~~~~~~dPyv~v~---------~~-~~~~kT~v~~~t~nP~Wne---~f~f~~~~~-~~~~l~v~   66 (116)
T cd08376           2 VTIVLVEGK-NLPPMDDNGLSDPYVKFR---------LG-NEKYKSKVCSKTLNPQWLE---QFDLHLFDD-QSQILEIE   66 (116)
T ss_pred             EEEEEEEEE-CCCCCCCCCCCCcEEEEE---------EC-CEeEecccccCCCCCceeE---EEEEEecCC-CCCEEEEE
Confidence            457889997 489999999999998755         22 1245666444578888888   699988654 57899999


Q ss_pred             EeccCccccc
Q 043301          233 FWDLDDVLVN  242 (244)
Q Consensus       233 ~~~~~~~~~~  242 (244)
                      |||+|+.+++
T Consensus        67 v~d~~~~~~~   76 (116)
T cd08376          67 VWDKDTGKKD   76 (116)
T ss_pred             EEECCCCCCC
Confidence            9999987654

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04032 C2_Perforin C2 domain of Perforin

Probab=98.66  E-value=1.3e-08  Score=81.97  Aligned_cols=74  Identities=14%  Similarity=0.120  Sum_probs=54.5

Q ss_pred             ceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEEE
Q 043301          154 DLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEF  233 (244)
Q Consensus       154 ~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (244)
                      .++|..|.+ | +++..|.+|||+++.         +.. ...+|+++-.+.+|.|||   +|.|.+...+....|.|||
T Consensus        31 ~V~V~~A~~-L-~~d~~g~~DPYVkV~---------~~~-~~~kT~vi~~t~nPvWNE---~F~f~~~~~~~~~~L~v~V   95 (127)
T cd04032          31 TVTVLRATG-L-WGDYFTSTDGYVKVF---------FGG-QEKRTEVIWNNNNPRWNA---TFDFGSVELSPGGKLRFEV   95 (127)
T ss_pred             EEEEEECCC-C-CcCcCCCCCeEEEEE---------ECC-ccccCceecCCCCCcCCC---EEEEecccCCCCCEEEEEE
Confidence            388888875 4 467778899998854         222 266777444467888887   6988765556788999999


Q ss_pred             eccCccccc
Q 043301          234 WDLDDVLVN  242 (244)
Q Consensus       234 ~~~~~~~~~  242 (244)
                      ||||..+++
T Consensus        96 ~D~d~~s~d  104 (127)
T cd04032          96 WDRDNGWDD  104 (127)
T ss_pred             EeCCCCCCC
Confidence            999998765

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=98.65  E-value=1.6e-08  Score=79.99  Aligned_cols=75  Identities=11%  Similarity=0.072  Sum_probs=56.1

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE  232 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (244)
                      |.+.|-+|. +|.++|.+|.+|||++++         +......+|+.+-.+.+|.|||   .|.|.+.++  .+.|.|+
T Consensus         2 l~v~vi~a~-~L~~~d~~g~~DPYv~v~---------~~~~~~~kT~v~~~t~nP~Wne---~f~~~~~~~--~~~l~v~   66 (121)
T cd04054           2 LYIRIVEGK-NLPAKDITGSSDPYCIVK---------VDNEVIIRTATVWKTLNPFWGE---EYTVHLPPG--FHTVSFY   66 (121)
T ss_pred             EEEEEEEee-CCcCCCCCCCCCceEEEE---------ECCEeeeeeeeEcCCCCCcccc---eEEEeeCCC--CCEEEEE
Confidence            457888997 489999999999998754         2222224666444578888887   699988654  3789999


Q ss_pred             EeccCccccc
Q 043301          233 FWDLDDVLVN  242 (244)
Q Consensus       233 ~~~~~~~~~~  242 (244)
                      |||+|+.+++
T Consensus        67 v~d~~~~~~d   76 (121)
T cd04054          67 VLDEDTLSRD   76 (121)
T ss_pred             EEECCCCCCC
Confidence            9999987764

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=98.65  E-value=1.7e-08  Score=78.82  Aligned_cols=74  Identities=11%  Similarity=0.121  Sum_probs=56.2

Q ss_pred             CcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEee-cCCCCChhhhhhhhhhcCCCCccceeE
Q 043301          152 PEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTIS-ESYPYSDDTLAQFILRLQNSLRSKNMS  230 (244)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (244)
                      .|.+.|.+|. +|-++|..|.+|||+++.         +.. ..++|++... +.+|.|||   .|.|.+... .++.|.
T Consensus         2 ~L~V~v~~A~-~L~~~~~~~~~dpyv~v~---------~~~-~~~kT~~~~~~~~nP~Wne---~f~f~v~~~-~~~~l~   66 (118)
T cd08681           2 TLVVVVLKAR-NLPNKRKLDKQDPYCVLR---------IGG-VTKKTKTDFRGGQHPEWDE---ELRFEITED-KKPILK   66 (118)
T ss_pred             EEEEEEEEcc-CCCCCCcCCCCCceEEEE---------ECC-CccccccccCCCCCCccCc---eEEEEecCC-CCCEEE
Confidence            4668899997 588899999999998743         332 3456664334 46888888   699998765 567899


Q ss_pred             EEEeccCccc
Q 043301          231 VEFWDLDDVL  240 (244)
Q Consensus       231 ~~~~~~~~~~  240 (244)
                      |+|||||..+
T Consensus        67 i~v~d~~~~~   76 (118)
T cd08681          67 VAVFDDDKRK   76 (118)
T ss_pred             EEEEeCCCCC
Confidence            9999999765

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=98.64  E-value=1.3e-08  Score=84.04  Aligned_cols=75  Identities=8%  Similarity=0.105  Sum_probs=58.1

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEee-cCCCCChhhhhhhhhhcCCCCccceeEE
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTIS-ESYPYSDDTLAQFILRLQNSLRSKNMSV  231 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (244)
                      |.++|.+|. +|.++|.+|.+|||++         ..|.. ..++|+++.. +.+|.|||   .|.|.+.. ..+..|.|
T Consensus         2 L~V~Vi~A~-~L~~~d~~g~sDPYV~---------v~l~~-~~~kTk~~~~~t~nP~WNE---~F~f~v~~-~~~~~l~v   66 (150)
T cd04019           2 LRVTVIEAQ-DLVPSDKNRVPEVFVK---------AQLGN-QVLRTRPSQTRNGNPSWNE---ELMFVAAE-PFEDHLIL   66 (150)
T ss_pred             EEEEEEEeE-CCCCCCCCCCCCeEEE---------EEECC-EEeeeEeccCCCCCCcccC---cEEEEecC-ccCCeEEE
Confidence            568899997 5899999999999987         44444 4667885555 48899988   69998743 33578999


Q ss_pred             EEeccCccccc
Q 043301          232 EFWDLDDVLVN  242 (244)
Q Consensus       232 ~~~~~~~~~~~  242 (244)
                      +|||+|..++|
T Consensus        67 ~V~d~~~~~~d   77 (150)
T cd04019          67 SVEDRVGPNKD   77 (150)
T ss_pred             EEEEecCCCCC
Confidence            99999987655

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=98.64  E-value=1.7e-08  Score=79.17  Aligned_cols=73  Identities=16%  Similarity=0.158  Sum_probs=54.7

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhccccccc--ccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeE
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLS--ETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMS  230 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (244)
                      +.++|-+|. +|-++|.+|.+|||+++.         +.  +...++|+++-.+.+|.|||   +|.|.+.+. .+..|.
T Consensus         2 L~V~vi~a~-~L~~~~~~~~~Dpyv~v~---------~~~~~~~~~kT~vv~~t~nP~Wne---~f~f~i~~~-~~~~l~   67 (119)
T cd04036           2 LTVRVLRAT-NITKGDLLSTPDCYVELW---------LPTASDEKKRTKTIKNSINPVWNE---TFEFRIQSQ-VKNVLE   67 (119)
T ss_pred             eEEEEEEee-CCCccCCCCCCCcEEEEE---------EcCCCCccCccceecCCCCCccce---EEEEEeCcc-cCCEEE
Confidence            457888887 478889899999997744         21  13456777444467788887   699988775 456799


Q ss_pred             EEEeccCcc
Q 043301          231 VEFWDLDDV  239 (244)
Q Consensus       231 ~~~~~~~~~  239 (244)
                      |+|||||+.
T Consensus        68 v~v~d~d~~   76 (119)
T cd04036          68 LTVMDEDYV   76 (119)
T ss_pred             EEEEECCCC
Confidence            999999987

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=98.57  E-value=4.6e-08  Score=77.07  Aligned_cols=90  Identities=16%  Similarity=0.161  Sum_probs=63.8

Q ss_pred             CCcEEEEEec--cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccc--cCCCCceeEeecCCCCChhhhhh
Q 043301          140 QDVELRTIQE--RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE--TGDQGSKVTISESYPYSDDTLAQ  215 (244)
Q Consensus       140 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~--~~~~~~~~~i~~~~~~~~~~~~~  215 (244)
                      |++++.....  ...+.++|-+|. +|-++|.+|..|||+++.         +.+  ....+|++.-.+.+|.|||   +
T Consensus         3 G~l~~~l~y~~~~~~L~v~v~~a~-~L~~~d~~~~~dpyv~v~---------~~~~~~~~~kT~v~~~t~~P~Wne---~   69 (125)
T cd08386           3 GRIQFSVSYDFQESTLTLKILKAV-ELPAKDFSGTSDPFVKIY---------LLPDKKHKLETKVKRKNLNPHWNE---T   69 (125)
T ss_pred             cEEEEEEEECCCCCEEEEEEEEec-CCCCccCCCCCCceEEEE---------ECCCCCcceeeeeecCCCCCccce---e
Confidence            5555555432  556789999997 489999999999998743         222  2335677555578888888   6


Q ss_pred             hhhhcCCC--CccceeEEEEeccCccccc
Q 043301          216 FILRLQNS--LRSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       216 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~  242 (244)
                      |.|...+.  ..++.|.++|||+|+.+++
T Consensus        70 f~f~~~~~~~l~~~~l~~~v~d~d~~~~~   98 (125)
T cd08386          70 FLFEGFPYEKLQQRVLYLQVLDYDRFSRN   98 (125)
T ss_pred             EEEcccCHHHhCCCEEEEEEEeCCCCcCC
Confidence            88874443  3467899999999987654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=98.56  E-value=4.4e-08  Score=77.62  Aligned_cols=74  Identities=16%  Similarity=0.164  Sum_probs=56.5

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE  232 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (244)
                      |.++|-.|. +|-++|.+|.+|||+.+.         ++.....+|.+.-.+.+|.|||   .|.|.+.+   +..|.||
T Consensus         2 l~v~v~~A~-~L~~~~~~~~~dpyv~v~---------~~~~~~~kT~v~~~t~nP~Wne---~f~~~~~~---~~~l~i~   65 (123)
T cd08382           2 VRLTVLCAD-GLAKRDLFRLPDPFAVIT---------VDGGQTHSTDVAKKTLDPKWNE---HFDLTVGP---SSIITIQ   65 (123)
T ss_pred             eEEEEEEec-CCCccCCCCCCCcEEEEE---------ECCccceEccEEcCCCCCcccc---eEEEEeCC---CCEEEEE
Confidence            568889997 488999999999997743         3333445676444477888888   69999975   6799999


Q ss_pred             EeccCccccc
Q 043301          233 FWDLDDVLVN  242 (244)
Q Consensus       233 ~~~~~~~~~~  242 (244)
                      |||+|...++
T Consensus        66 V~d~~~~~~~   75 (123)
T cd08382          66 VFDQKKFKKK   75 (123)
T ss_pred             EEECCCCCCC
Confidence            9999987653

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=98.54  E-value=5.6e-08  Score=80.24  Aligned_cols=75  Identities=13%  Similarity=0.174  Sum_probs=55.9

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccc----cCCCCceeEeecCCCCChhhhhhhhhhcC-------
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE----TGDQGSKVTISESYPYSDDTLAQFILRLQ-------  221 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------  221 (244)
                      |.+.|-+|.+ |.+  .+|.+|||+++.         +.+    ..+++|++.-.+.+|.|||   +|.|.+.       
T Consensus         2 L~V~Vi~Arn-L~~--~~g~sDPYV~V~---------l~~~~~k~~~~kT~v~~~t~nP~wNE---~F~F~v~~~~~~~~   66 (148)
T cd04010           2 LSVRVIECSD-LAL--KNGTCDPYASVT---------LIYSNKKQDTKRTKVKKKTNNPQFDE---AFYFDVTIDSSPEK   66 (148)
T ss_pred             EEEEEEeCcC-CCC--CCCCCCceEEEE---------EeCCcccCcccCCccEeCCCCCccce---EEEEEEeccccccc
Confidence            5688899975 555  789999998743         332    1466788555678888888   6999985       


Q ss_pred             -----C--CCccceeEEEEeccCccccc
Q 043301          222 -----N--SLRSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       222 -----~--~~~~~~~~~~~~~~~~~~~~  242 (244)
                           +  +..+..|.|+|||.|+.+++
T Consensus        67 ~~~~~~~~~~~~~~L~i~V~d~~~~~~d   94 (148)
T cd04010          67 KQFEMPEEDAEKLELRVDLWHASMGGGD   94 (148)
T ss_pred             ccccCCcccccEEEEEEEEEcCCCCCCC
Confidence                 2  23457899999999988765

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=98.52  E-value=4.9e-08  Score=77.05  Aligned_cols=77  Identities=16%  Similarity=0.138  Sum_probs=56.3

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE  232 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (244)
                      ++++|-.|. +|.+++.+|.+|||+++.       ..-......+|++.-.+.+|.|||   +|.|.+..+ .++.|.|+
T Consensus         3 ~~V~v~~a~-~L~~~~~~~~~Dpyv~v~-------~~~~~~~~~kT~~~~~t~~P~Wne---~f~f~i~~~-~~~~L~i~   70 (126)
T cd04043           3 FTIRIVRAE-NLKADSSNGLSDPYVTLV-------DTNGKRRIAKTRTIYDTLNPRWDE---EFELEVPAG-EPLWISAT   70 (126)
T ss_pred             EEEEEEEeE-CCCCCCCCCCCCceEEEE-------ECCCCeeeecccEecCCCCCcccc---eEEEEcCCC-CCCEEEEE
Confidence            457888887 489999999999998753       100111234666444577888887   699998876 57899999


Q ss_pred             EeccCcccc
Q 043301          233 FWDLDDVLV  241 (244)
Q Consensus       233 ~~~~~~~~~  241 (244)
                      |||||..+.
T Consensus        71 v~d~d~~~~   79 (126)
T cd04043          71 VWDRSFVGK   79 (126)
T ss_pred             EEECCCCCC
Confidence            999998644

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=98.50  E-value=4.5e-08  Score=77.24  Aligned_cols=87  Identities=14%  Similarity=0.142  Sum_probs=64.4

Q ss_pred             CCcEEEEEec--cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccc----cCCCCceeEeecCCCCChhhh
Q 043301          140 QDVELRTIQE--RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE----TGDQGSKVTISESYPYSDDTL  213 (244)
Q Consensus       140 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~----~~~~~~~~~i~~~~~~~~~~~  213 (244)
                      |++++...-.  .+.+.++|-.|. +|.++|.++.+|||+++.         +.+    ....+|++.-.+.+|.|||  
T Consensus         3 G~l~~~l~y~~~~~~L~V~vi~a~-~L~~~~~~~~~dpyv~v~---------l~~~~~~~~~~kT~v~~~~~nP~wne--   70 (127)
T cd04030           3 GRIQLTIRYSSQRQKLIVTVHKCR-NLPPCDSSDIPDPYVRLY---------LLPDKSKSTRRKTSVKKDNLNPVFDE--   70 (127)
T ss_pred             eEEEEEEEEeCCCCEEEEEEEEEE-CCCCccCCCCCCceEEEE---------EEcCCCCCceEecccccCCCCCEECe--
Confidence            5555555433  467889999997 589999999999998744         322    2455677444477888888  


Q ss_pred             hhhhhhcCCCCc-cceeEEEEeccCcc
Q 043301          214 AQFILRLQNSLR-SKNMSVEFWDLDDV  239 (244)
Q Consensus       214 ~~~~~~~~~~~~-~~~~~~~~~~~~~~  239 (244)
                       +|.|.+..++. ++.|.|.|||+|..
T Consensus        71 -~f~f~i~~~~l~~~~l~i~v~~~~~~   96 (127)
T cd04030          71 -TFEFPVSLEELKRRTLDVAVKNSKSF   96 (127)
T ss_pred             -EEEEecCHHHhcCCEEEEEEEECCcc
Confidence             69999987654 57899999999874

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=98.49  E-value=7.7e-08  Score=75.79  Aligned_cols=75  Identities=24%  Similarity=0.283  Sum_probs=55.6

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE  232 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (244)
                      |.++|-+|. +|.++|.+|.+|||+++..         .. ...+|++.-.+.+|.|||   +|.|.+.... +..|.|+
T Consensus         2 L~v~vi~a~-~L~~~d~~~~~DPyv~v~~---------~~-~~~kT~v~~~t~nP~Wne---~f~f~~~~~~-~~~l~~~   66 (123)
T cd04025           2 LRCHVLEAR-DLAPKDRNGTSDPFVRVFY---------NG-QTLETSVVKKSCYPRWNE---VFEFELMEGA-DSPLSVE   66 (123)
T ss_pred             EEEEEEEee-CCCCCCCCCCcCceEEEEE---------CC-EEEeceeecCCCCCccCc---EEEEEcCCCC-CCEEEEE
Confidence            457888997 4899999999999988541         11 123455333477888887   6999987654 7889999


Q ss_pred             EeccCccccc
Q 043301          233 FWDLDDVLVN  242 (244)
Q Consensus       233 ~~~~~~~~~~  242 (244)
                      |||+|..+.+
T Consensus        67 v~d~~~~~~~   76 (123)
T cd04025          67 VWDWDLVSKN   76 (123)
T ss_pred             EEECCCCCCC
Confidence            9999987653

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=98.45  E-value=7.7e-08  Score=78.04  Aligned_cols=74  Identities=11%  Similarity=0.116  Sum_probs=55.0

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE  232 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (244)
                      |.++|.+|. +|.++|..|.+|||+++.         +. ....+|+++-.+.+|.|||   .|.|.+.. ..+..|.||
T Consensus        17 L~V~Vi~A~-~L~~~d~~g~~DPYv~v~---------~~-~~~~kT~vi~~t~nP~Wne---~f~f~v~~-~~~~~l~i~   81 (136)
T cd08375          17 LMVVIVEGR-DLKPCNSNGKSDPYCEVS---------MG-SQEHKTKVVSDTLNPKWNS---SMQFFVKD-LEQDVLCIT   81 (136)
T ss_pred             EEEEEEEee-CCCCCCCCCCcCcEEEEE---------EC-CEeeeccccCCCCCCccCc---eEEEEecC-ccCCEEEEE
Confidence            348899997 489999999999998744         22 1245677444477888887   69888853 345789999


Q ss_pred             EeccCcccc
Q 043301          233 FWDLDDVLV  241 (244)
Q Consensus       233 ~~~~~~~~~  241 (244)
                      |||+|..+.
T Consensus        82 V~D~d~~~~   90 (136)
T cd08375          82 VFDRDFFSP   90 (136)
T ss_pred             EEECCCCCC
Confidence            999998764

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=98.45  E-value=1.5e-07  Score=73.90  Aligned_cols=80  Identities=13%  Similarity=0.156  Sum_probs=58.2

Q ss_pred             cCCcceeeecccccccccC-CCCcchhhHHHHhhhhccccccccc--CCCCceeEeecCCCCChhhhhhhhhhcCCCCc-
Q 043301          150 RNPEDLTFHDVFSSFTEKD-RNQLDDITENIESEIAGIKKTLSET--GDQGSKVTISESYPYSDDTLAQFILRLQNSLR-  225 (244)
Q Consensus       150 ~~~~~~~v~~~~~~~~~~~-~n~l~d~~~~~~~~~~~~~~~l~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-  225 (244)
                      ...+.+.|-+|. +|.++| .+|..|||+++.         +.+.  ...+|+..-.+.+|.|||   .|.|.+..++. 
T Consensus        13 ~~~L~V~v~~a~-~L~~~~~~~~~~dpyV~v~---------l~~~~~~~~~T~v~~~~~~P~wne---~f~f~i~~~~l~   79 (123)
T cd08390          13 EEQLTVSLIKAR-NLPPRTKDVAHCDPFVKVC---------LLPDERRSLQSKVKRKTQNPNFDE---TFVFQVSFKELQ   79 (123)
T ss_pred             CCEEEEEEEEec-CCCCccCCCCCCCcEEEEE---------EeeCCCCceEeeeEcCCCCCccce---EEEEEcCHHHhc
Confidence            345678999997 589998 789999997743         2222  233455333578888888   69999877644 


Q ss_pred             cceeEEEEeccCccccc
Q 043301          226 SKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       226 ~~~~~~~~~~~~~~~~~  242 (244)
                      .+.|.|+|||+|..+++
T Consensus        80 ~~~l~i~v~d~~~~~~~   96 (123)
T cd08390          80 RRTLRLSVYDVDRFSRH   96 (123)
T ss_pred             ccEEEEEEEECCcCCCC
Confidence            57899999999987654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=98.44  E-value=8.5e-08  Score=76.46  Aligned_cols=72  Identities=10%  Similarity=0.087  Sum_probs=51.4

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE  232 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (244)
                      |.+.|.+|.+ |.+   ++.+|||+++         .|.....++|+ +....+|.|||   +|.|...+++. .+|.|+
T Consensus         6 L~V~Vi~A~~-L~~---~~~~DPYv~v---------~l~~~~~~kT~-v~~~~nP~WnE---~f~f~~~~~~~-~~l~v~   67 (126)
T cd08400           6 LQLNVLEAHK-LPV---KHVPHPYCVI---------SLNEVKVARTK-VREGPNPVWSE---EFVFDDLPPDV-NSFTIS   67 (126)
T ss_pred             EEEEEEEeeC-CCC---CCCCCeeEEE---------EECCEeEEEee-cCCCCCCccCC---EEEEecCCCCc-CEEEEE
Confidence            6689999985 554   4579999774         34332234555 35677888888   69998666544 469999


Q ss_pred             EeccCccccc
Q 043301          233 FWDLDDVLVN  242 (244)
Q Consensus       233 ~~~~~~~~~~  242 (244)
                      |||||+.+++
T Consensus        68 v~d~~~~~~d   77 (126)
T cd08400          68 LSNKAKRSKD   77 (126)
T ss_pred             EEECCCCCCC
Confidence            9999998765

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=98.44  E-value=1.3e-07  Score=74.98  Aligned_cols=80  Identities=14%  Similarity=0.148  Sum_probs=60.0

Q ss_pred             cCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhhhhhhhhcCCCC-
Q 043301          150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTLAQFILRLQNSL-  224 (244)
Q Consensus       150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-  224 (244)
                      .+.+.++|-+|.+ |.+++.++..|||+++.         |.+.    ..++|++.-.+.+|.|||   +|.|.+.+.+ 
T Consensus        13 ~~~L~V~v~~a~~-L~~~~~~~~~dpyv~v~---------l~~~~~~~~~~~T~~~~~~~~P~wne---~f~f~i~~~~l   79 (134)
T cd00276          13 AERLTVVVLKARN-LPPSDGKGLSDPYVKVS---------LLQGGKKLKKKKTSVKKGTLNPVFNE---AFSFDVPAEQL   79 (134)
T ss_pred             CCEEEEEEEEeeC-CCCccCCCCCCcEEEEE---------EEcCCeEeeeecCcceecCCCCeeee---eEEEECCHHHh
Confidence            4567799999974 88899899999998733         3332    345677444577888888   6999998876 


Q ss_pred             ccceeEEEEeccCccccc
Q 043301          225 RSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~  242 (244)
                      ....|.|+|||+|...++
T Consensus        80 ~~~~l~~~v~d~~~~~~~   97 (134)
T cd00276          80 EEVSLVITVVDKDSVGRN   97 (134)
T ss_pred             CCcEEEEEEEecCCCCCC
Confidence            367899999999986543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=98.44  E-value=1.6e-07  Score=74.73  Aligned_cols=76  Identities=14%  Similarity=0.072  Sum_probs=54.8

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhccccccccc-CCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEE
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET-GDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSV  231 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (244)
                      +.+.|-+|. .|-++|.+|.+|||+++.         +... ...+|+.+-.+.+|.|||   +|.|.+.. ..+..|.|
T Consensus         2 lrV~Vi~a~-~L~~~d~~g~~DPYv~v~---------~~~~~~~~kT~~v~~t~nP~Wne---~f~f~~~~-~~~~~L~~   67 (124)
T cd04037           2 VRVYVVRAR-NLQPKDPNGKSDPYLKIK---------LGKKKINDRDNYIPNTLNPVFGK---MFELEATL-PGNSILKI   67 (124)
T ss_pred             EEEEEEECc-CCCCCCCCCCCCcEEEEE---------ECCeeccceeeEEECCCCCccce---EEEEEecC-CCCCEEEE
Confidence            347788887 488999999999998754         2222 224455444578888887   69887643 34678999


Q ss_pred             EEeccCccccc
Q 043301          232 EFWDLDDVLVN  242 (244)
Q Consensus       232 ~~~~~~~~~~~  242 (244)
                      +|||||..+.|
T Consensus        68 ~V~d~d~~~~d   78 (124)
T cd04037          68 SVMDYDLLGSD   78 (124)
T ss_pred             EEEECCCCCCC
Confidence            99999987654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=98.43  E-value=1.1e-07  Score=76.58  Aligned_cols=76  Identities=17%  Similarity=0.162  Sum_probs=55.1

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCC--CC------
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQN--SL------  224 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~------  224 (244)
                      +.+.|-+|. +|.++|.+|..|||+++.         +. ...++|+++-.+.+|.|||   .|.|.+..  ++      
T Consensus         3 l~v~V~~a~-~L~~~d~~g~~dpyv~v~---------~~-~~~~kT~v~~~t~nP~Wne---~~~f~~~~~~~~~~~~~~   68 (135)
T cd04017           3 LRAYIYQAR-DLLAADKSGLSDPFARVS---------FL-NQSQETEVIKETLSPTWDQ---TLIFDEVELYGSPEEIAQ   68 (135)
T ss_pred             EEEEEEEee-cCcCCCCCCCCCCEEEEE---------EC-CeeeEeeeEcCCCCCccCc---EEEEeeeeccCChHHhhc
Confidence            447888997 489999999999998743         22 2355677454577888888   58887432  11      


Q ss_pred             ccceeEEEEeccCccccc
Q 043301          225 RSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~  242 (244)
                      ....|.|||||+|+.++|
T Consensus        69 ~~~~l~v~V~d~d~~~~d   86 (135)
T cd04017          69 NPPLVVVELFDQDSVGKD   86 (135)
T ss_pred             CCCEEEEEEEeCcCCCCC
Confidence            235799999999998765

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=98.43  E-value=1.1e-07  Score=75.44  Aligned_cols=74  Identities=8%  Similarity=0.141  Sum_probs=56.8

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCC--CccceeE
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNS--LRSKNMS  230 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  230 (244)
                      |.++|-+|. +|.++|.+|.+|||+++.         +..+ +++|++.-.+.+|.|||   .|.|.+...  ..+..|.
T Consensus         2 L~V~vi~A~-~L~~~d~~g~~dpyv~v~---------~~~~-~~rT~v~~~t~nP~Wne---~f~f~~~~~~~~~~~~l~   67 (127)
T cd04022           2 LVVEVVDAQ-DLMPKDGQGSSSAYVELD---------FDGQ-KKRTRTKPKDLNPVWNE---KLVFNVSDPSRLSNLVLE   67 (127)
T ss_pred             eEEEEEEee-CCCCCCCCCCcCcEEEEE---------ECCE-EecceeEcCCCCCccce---EEEEEccCHHHccCCeEE
Confidence            568899997 489999999999998743         3322 45777544577888888   699998753  3468899


Q ss_pred             EEEeccCccc
Q 043301          231 VEFWDLDDVL  240 (244)
Q Consensus       231 ~~~~~~~~~~  240 (244)
                      |+|||+|+.+
T Consensus        68 ~~V~d~~~~~   77 (127)
T cd04022          68 VYVYNDRRSG   77 (127)
T ss_pred             EEEeeCCCCc
Confidence            9999999874

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=98.42  E-value=1.3e-07  Score=75.34  Aligned_cols=81  Identities=14%  Similarity=0.123  Sum_probs=55.7

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE  232 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (244)
                      |.++|-.|. +|.++|..|.+|||+++.-.-.   +.-....+.+|++.-.+.+|.|||   +|.|.+.+.  ++.|.|+
T Consensus         2 L~v~Vi~a~-~L~~~d~~~~~Dpyv~v~~~~~---~~~~~~~~~kT~v~~~t~nP~Wne---~f~f~~~~~--~~~l~~~   72 (133)
T cd04033           2 LRVKVLAGI-DLAKKDIFGASDPYVKISLYDP---DGNGEIDSVQTKTIKKTLNPKWNE---EFFFRVNPR--EHRLLFE   72 (133)
T ss_pred             EEEEEEEeE-CCCcccCCCCcCcEEEEEEECC---CCCCcccceeeeEEcCCCCCcEee---EEEEEEcCC--CCEEEEE
Confidence            457888887 4889999999999987441000   000011234666444477888887   699998764  4689999


Q ss_pred             EeccCccccc
Q 043301          233 FWDLDDVLVN  242 (244)
Q Consensus       233 ~~~~~~~~~~  242 (244)
                      |||+|+.+++
T Consensus        73 v~d~~~~~~~   82 (133)
T cd04033          73 VFDENRLTRD   82 (133)
T ss_pred             EEECCCCCCC
Confidence            9999987764

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=98.42  E-value=1.2e-07  Score=78.84  Aligned_cols=80  Identities=18%  Similarity=0.250  Sum_probs=54.9

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhh---h----------------hcccccccccCCCCceeEeecCCCCChhhh
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESE---I----------------AGIKKTLSETGDQGSKVTISESYPYSDDTL  213 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~---~----------------~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~  213 (244)
                      |.++|-+|. +|.++|.+|.+|||++++-.   .                ...+..+......+|++.-.+.+|.|||  
T Consensus        30 L~V~vi~a~-~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE--  106 (153)
T cd08676          30 LKVTVIEAK-GLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNE--  106 (153)
T ss_pred             EEEEEEecc-CCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcccc--
Confidence            448899997 48999999999999775410   0                0111222333345566444478888887  


Q ss_pred             hhhhhhcCCCCccceeEEEEeccC
Q 043301          214 AQFILRLQNSLRSKNMSVEFWDLD  237 (244)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~  237 (244)
                       +|.|.+... .+..|.|+|||+|
T Consensus       107 -~F~f~v~~~-~~~~L~i~V~D~d  128 (153)
T cd08676         107 -TFRFEVEDV-SNDQLHLDIWDHD  128 (153)
T ss_pred             -EEEEEeccC-CCCEEEEEEEecC
Confidence             699988543 4678999999997

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines

Probab=98.41  E-value=5.6e-08  Score=59.18  Aligned_cols=29  Identities=38%  Similarity=1.063  Sum_probs=14.2

Q ss_pred             ccccccccCCCC-CcEEeCCCCCccccccc
Q 043301           33 IICDICETSLQG-PAYGCGTCEFSIHKSCA   61 (244)
Q Consensus        33 ~~C~~C~~~i~g-~~Y~C~~C~F~lH~~Ca   61 (244)
                      +.|++|++++.+ ..|+|.+|+|++|..||
T Consensus         1 ~~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca   30 (30)
T PF07649_consen    1 FRCDACGKPIDGGWFYRCSECDFDLHEECA   30 (30)
T ss_dssp             ---TTTS----S--EEE-TTT-----HHHH
T ss_pred             CcCCcCCCcCCCCceEECccCCCccChhcC
Confidence            479999999988 99999999999999996

The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=98.39  E-value=1.2e-07  Score=76.23  Aligned_cols=72  Identities=11%  Similarity=0.102  Sum_probs=53.2

Q ss_pred             cceeeecccc--cccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeE
Q 043301          153 EDLTFHDVFS--SFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMS  230 (244)
Q Consensus       153 ~~~~v~~~~~--~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (244)
                      |.++|..|.+  .|..+|..|-+|||+.++         +..+ +.+|++.-.++||.|||   +|.|.+...  +..|.
T Consensus         2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~---------~g~~-~~rTk~~~~~~nP~WnE---~f~f~v~~~--~~~l~   66 (126)
T cd08379           2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAK---------YGPK-WVRTRTVEDSSNPRWNE---QYTWPVYDP--CTVLT   66 (126)
T ss_pred             eEEEEEEeECCccccccccCCCCCeeEEEE---------ECCE-EeEcCcccCCCCCccee---EEEEEecCC--CCEEE
Confidence            4688888975  378999999999998844         3322 44677333367888877   799988543  34899


Q ss_pred             EEEeccCcc
Q 043301          231 VEFWDLDDV  239 (244)
Q Consensus       231 ~~~~~~~~~  239 (244)
                      |+|||+|+.
T Consensus        67 v~V~d~d~~   75 (126)
T cd08379          67 VGVFDNSQS   75 (126)
T ss_pred             EEEEECCCc
Confidence            999999986

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=98.38  E-value=2e-07  Score=73.97  Aligned_cols=72  Identities=18%  Similarity=0.207  Sum_probs=51.2

Q ss_pred             ceeeecccccccccCCCCcchhhHHHHhhhhcccccccc-cCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301          154 DLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE-TGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE  232 (244)
Q Consensus       154 ~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (244)
                      .+.|-+|.+ |-+  .+|.+|||+.+.         ++. ..+.+|+++..+.+|.|||   .|.|.+.+.  ...|.|+
T Consensus         2 ~v~v~~A~~-L~~--~~g~~dpyv~v~---------~~~~~~~~kT~v~~~t~nP~Wne---~f~f~~~~~--~~~l~~~   64 (126)
T cd08678           2 LVKNIKANG-LSE--AAGSSNPYCVLE---------MDEPPQKYQSSTQKNTSNPFWDE---HFLFELSPN--SKELLFE   64 (126)
T ss_pred             EEEEEEecC-CCC--CCCCcCCEEEEE---------ECCCCcEEEeEEEecCCCCccCc---eEEEEeCCC--CCEEEEE
Confidence            467778864 444  778999998744         321 2235677444567888887   699999654  5679999


Q ss_pred             EeccCccccc
Q 043301          233 FWDLDDVLVN  242 (244)
Q Consensus       233 ~~~~~~~~~~  242 (244)
                      |||||..+++
T Consensus        65 v~d~~~~~~~   74 (126)
T cd08678          65 VYDNGKKSDS   74 (126)
T ss_pred             EEECCCCCCC
Confidence            9999998754

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=98.37  E-value=2.7e-07  Score=72.69  Aligned_cols=87  Identities=14%  Similarity=0.133  Sum_probs=62.3

Q ss_pred             CCcEEEEEec--cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccc----cCCCCceeEeecCCCCChhhh
Q 043301          140 QDVELRTIQE--RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE----TGDQGSKVTISESYPYSDDTL  213 (244)
Q Consensus       140 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~----~~~~~~~~~i~~~~~~~~~~~  213 (244)
                      |++++.....  ...+.++|-+|. +|.+++..|..|||+++.         +.+    ...++|+++-.+.+|.|||  
T Consensus         2 G~~~~~l~y~~~~~~L~V~v~~a~-~L~~~~~~~~~dpyv~v~---------~~~~~~~~~~~rT~v~~~~~~P~Wne--   69 (123)
T cd04035           2 GTLEFTLLYDPANSALHCTIIRAK-GLKAMDANGLSDPYVKLN---------LLPGASKATKLRTKTVHKTRNPEFNE--   69 (123)
T ss_pred             cEEEEEEEEeCCCCEEEEEEEEee-CCCCCCCCCCCCceEEEE---------EecCCCCCCceeeeeecCCCCCCccc--
Confidence            5555554443  456789999997 488999999999998844         221    2356777555578888888  


Q ss_pred             hhhhhh-cCCCCc-cceeEEEEeccCcc
Q 043301          214 AQFILR-LQNSLR-SKNMSVEFWDLDDV  239 (244)
Q Consensus       214 ~~~~~~-~~~~~~-~~~~~~~~~~~~~~  239 (244)
                       +|.|. +.+++. +..|.|+|||+|..
T Consensus        70 -~f~f~~~~~~~~~~~~l~~~v~d~~~~   96 (123)
T cd04035          70 -TLTYYGITEEDIQRKTLRLLVLDEDRF   96 (123)
T ss_pred             -eEEEcCCCHHHhCCCEEEEEEEEcCCc
Confidence             58885 444444 57899999999976

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=98.36  E-value=2.2e-07  Score=73.94  Aligned_cols=73  Identities=15%  Similarity=0.140  Sum_probs=53.6

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE  232 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (244)
                      +.++|-+|.+ |-++|.+|.+|||+.+.         +.. ...+|+++-.+.+|.|||   .|.|.+.  +.++.|.|+
T Consensus         5 ~~V~v~~A~~-L~~~d~~g~~dPyv~v~---------~~~-~~~kT~v~~~t~nP~Wne---~f~f~~~--~~~~~l~i~   68 (126)
T cd04046           5 TQVHVHSAEG-LSKQDSGGGADPYVIIK---------CEG-ESVRSPVQKDTLSPEFDT---QAIFYRK--KPRSPIKIQ   68 (126)
T ss_pred             EEEEEEeCcC-CCCCCCCCCcCccEEEE---------ECC-EEEEeCccCCCCCCcccc---eEEEEec--CCCCEEEEE
Confidence            4588889974 78899999999998754         111 235666444467788888   6888765  457889999


Q ss_pred             EeccCcccc
Q 043301          233 FWDLDDVLV  241 (244)
Q Consensus       233 ~~~~~~~~~  241 (244)
                      |||||+...
T Consensus        69 V~d~~~~~d   77 (126)
T cd04046          69 VWNSNLLCD   77 (126)
T ss_pred             EEECCCCCC
Confidence            999997643

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=98.35  E-value=3e-07  Score=73.37  Aligned_cols=64  Identities=13%  Similarity=0.261  Sum_probs=47.6

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhhhhhhhhcCCCCccce
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKN  228 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (244)
                      |.++|.+|.+ |     +|.+|||+++         .+++.    .+.+||++-.+++|.|||   +|.|.+.+   .+-
T Consensus         1 L~V~V~~A~~-L-----~~~sDPYV~l---------~v~~~~~~~~~~KTk~i~~TlnPvWnE---~F~i~l~~---s~~   59 (118)
T cd08686           1 LNVIVHSAQG-F-----KQSANLYCTL---------EVDSFGYFVKKAKTRVCRDTTEPNWNE---EFEIELEG---SQT   59 (118)
T ss_pred             CEEEEEeCCC-C-----CCCCCCEEEE---------EEcCccccceeeeeeeecCCCCCccce---EEEEEeCC---CCE
Confidence            3578888875 3     5789999773         34442    357888555588999988   69999963   559


Q ss_pred             eEEEEeccC
Q 043301          229 MSVEFWDLD  237 (244)
Q Consensus       229 ~~~~~~~~~  237 (244)
                      |.+.||||+
T Consensus        60 L~~~v~d~~   68 (118)
T cd08686          60 LRILCYEKC   68 (118)
T ss_pred             EEEEEEEcc
Confidence            999999994

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=98.35  E-value=2.6e-07  Score=72.70  Aligned_cols=75  Identities=11%  Similarity=0.095  Sum_probs=55.8

Q ss_pred             CcceeeecccccccccCC--CCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCcccee
Q 043301          152 PEDLTFHDVFSSFTEKDR--NQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNM  229 (244)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~--n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (244)
                      .|.+.|-+|. +|.++|.  +|.+|||+.++         +.. ...+|++.-.+.+|.|||   +|.|.+.. ..++.|
T Consensus         2 ~l~v~v~~a~-~L~~~~~~~~~~~dPyv~v~---------~~~-~~~kT~~~~~t~~P~Wne---~f~~~~~~-~~~~~l   66 (128)
T cd04024           2 VLRVHVVEAK-DLAAKDRSGKGKSDPYAILS---------VGA-QRFKTQTIPNTLNPKWNY---WCEFPIFS-AQNQLL   66 (128)
T ss_pred             EEEEEEEEee-CCCcccCCCCCCcCCeEEEE---------ECC-EEEecceecCCcCCccCC---cEEEEecC-CCCCEE
Confidence            3557888997 4889998  99999998754         221 235666445578888887   68888865 456899


Q ss_pred             EEEEeccCcccc
Q 043301          230 SVEFWDLDDVLV  241 (244)
Q Consensus       230 ~~~~~~~~~~~~  241 (244)
                      .|+|||+|..+.
T Consensus        67 ~i~v~d~~~~~~   78 (128)
T cd04024          67 KLILWDKDRFAG   78 (128)
T ss_pred             EEEEEECCCCCC
Confidence            999999998654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=98.32  E-value=4e-07  Score=73.86  Aligned_cols=78  Identities=19%  Similarity=0.265  Sum_probs=56.3

Q ss_pred             ceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCC---------
Q 043301          154 DLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSL---------  224 (244)
Q Consensus       154 ~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---------  224 (244)
                      .+.|-+|.+ |..+ .+|..|||+++.-.     .. +....++|++.-.+.+|.|||   +|.|.+....         
T Consensus         2 ~V~Vi~A~~-L~~~-~~g~~dPyv~v~~~-----~~-~~~~~~rT~vv~~t~nP~Wne---~f~f~~~~~~~~~~~~~~~   70 (137)
T cd08675           2 SVRVLECRD-LALK-SNGTCDPFARVTLN-----YS-SKTDTKRTKVKKKTNNPRFDE---AFYFELTIGFSYEKKSFKV   70 (137)
T ss_pred             EEEEEEccC-CCcc-cCCCCCcEEEEEEe-----cC-CcCCeeccceeeCCCCCCcce---EEEEEcccccccccccccc
Confidence            467888874 7888 88999999874410     00 123557777444477888888   6999987763         


Q ss_pred             -----ccceeEEEEeccCccccc
Q 043301          225 -----RSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       225 -----~~~~~~~~~~~~~~~~~~  242 (244)
                           .+..|.|+|||||+..++
T Consensus        71 ~~~~~~~~~l~i~V~d~~~~~~~   93 (137)
T cd08675          71 EEEDLEKSELRVELWHASMVSGD   93 (137)
T ss_pred             ccccccccEEEEEEEcCCcCcCC
Confidence                 567999999999987554

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=98.31  E-value=2.6e-07  Score=71.05  Aligned_cols=71  Identities=13%  Similarity=0.130  Sum_probs=53.8

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE  232 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (244)
                      |.++|.+|.+ |-+++..|..|||++++         +.. ..++|++.-.+.+|.|||   .|.|.+.... ...|.|+
T Consensus         2 L~V~v~~A~~-L~~~~~~~~~dpyv~v~---------~~~-~~~kT~v~~~t~nP~Wne---~f~f~v~~~~-~~~l~v~   66 (105)
T cd04050           2 LFVYLDSAKN-LPLAKSTKEPSPYVELT---------VGK-TTQKSKVKERTNNPVWEE---GFTFLVRNPE-NQELEIE   66 (105)
T ss_pred             EEEEEeeecC-CCCcccCCCCCcEEEEE---------ECC-EEEeCccccCCCCCcccc---eEEEEeCCCC-CCEEEEE
Confidence            5688999974 88889999999998744         332 345666444577888888   6999987533 4589999


Q ss_pred             EeccCc
Q 043301          233 FWDLDD  238 (244)
Q Consensus       233 ~~~~~~  238 (244)
                      |||+|.
T Consensus        67 v~d~~~   72 (105)
T cd04050          67 VKDDKT   72 (105)
T ss_pred             EEECCC
Confidence            999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=98.31  E-value=2.8e-07  Score=71.05  Aligned_cols=75  Identities=16%  Similarity=0.059  Sum_probs=50.4

Q ss_pred             cccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhh---cCCCCccceeEEEEec
Q 043301          159 DVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILR---LQNSLRSKNMSVEFWD  235 (244)
Q Consensus       159 ~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  235 (244)
                      .|. +|.++|..|.+|||+++...-.    .-.....++|+++-.+.+|.||+    |.|.   |...+.++.|.|||||
T Consensus         8 ~a~-~L~~~d~~~~~DPyv~v~~~~~----~~~~~~~~kT~vi~~t~nP~Wn~----f~~~~~~l~~~~~~~~l~~~V~d   78 (110)
T cd04047           8 SGK-KLDKKDFFGKSDPFLEISRQSE----DGTWVLVYRTEVIKNTLNPVWKP----FTIPLQKLCNGDYDRPIKIEVYD   78 (110)
T ss_pred             EeC-CCCCCCCCCCCCeeEEEEEECC----CCCEEEEEeeeEeccCCCCceEE----EEEEHHHhcCCCcCCEEEEEEEE
Confidence            344 4788999999999987531000    00011245677455578999994    5543   5566778999999999


Q ss_pred             cCccccc
Q 043301          236 LDDVLVN  242 (244)
Q Consensus       236 ~~~~~~~  242 (244)
                      ||+.+++
T Consensus        79 ~d~~~~d   85 (110)
T cd04047          79 YDSSGKH   85 (110)
T ss_pred             eCCCCCC
Confidence            9998654

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=98.29  E-value=2.9e-07  Score=75.72  Aligned_cols=73  Identities=14%  Similarity=0.162  Sum_probs=54.7

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE  232 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (244)
                      |.+.|-.|.+ |...|. +.+|||+.++         +.. ...+|+++-.+.+|.|||   .|+|.+...  +..|.++
T Consensus         4 L~V~Vi~a~n-L~~~d~-~~sDPYV~v~---------~g~-~~~kT~vvk~t~nP~WnE---~f~f~i~~~--~~~l~~~   66 (145)
T cd04038           4 LKVRVVRGTN-LAVRDF-TSSDPYVVLT---------LGN-QKVKTRVIKKNLNPVWNE---ELTLSVPNP--MAPLKLE   66 (145)
T ss_pred             EEEEEEeeEC-CCCCCC-CCcCcEEEEE---------ECC-EEEEeeeEcCCCCCeecc---cEEEEecCC--CCEEEEE
Confidence            5578888864 777777 7899998754         222 246677555678888888   699887644  8899999


Q ss_pred             EeccCccccc
Q 043301          233 FWDLDDVLVN  242 (244)
Q Consensus       233 ~~~~~~~~~~  242 (244)
                      |||||+.+++
T Consensus        67 V~D~d~~~~d   76 (145)
T cd04038          67 VFDKDTFSKD   76 (145)
T ss_pred             EEECCCCCCC
Confidence            9999988764

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=98.29  E-value=4.5e-07  Score=71.84  Aligned_cols=76  Identities=9%  Similarity=0.070  Sum_probs=55.8

Q ss_pred             CcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEE
Q 043301          152 PEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSV  231 (244)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (244)
                      .+.++|.+|. +|.+.|.+|..|||+.+.         +.....++|+..-.+.+|.|||   .|.|.+...  ++.|.|
T Consensus         2 ~L~V~Vi~a~-~L~~~d~~g~~DPYv~v~---------~~~~~~~kT~~~~~t~~P~Wne---~f~~~v~~~--~~~L~v   66 (120)
T cd04045           2 VLRLHIRKAN-DLKNLEGVGKIDPYVRVL---------VNGIVKGRTVTISNTLNPVWDE---VLYVPVTSP--NQKITL   66 (120)
T ss_pred             eEEEEEEeeE-CCCCccCCCCcCCEEEEE---------ECCEEeeceeEECCCcCCccCc---eEEEEecCC--CCEEEE
Confidence            3557888887 488889899999998744         2223345666444467888887   587777665  468999


Q ss_pred             EEeccCccccc
Q 043301          232 EFWDLDDVLVN  242 (244)
Q Consensus       232 ~~~~~~~~~~~  242 (244)
                      ||||+|+.+++
T Consensus        67 ~v~d~~~~~~d   77 (120)
T cd04045          67 EVMDYEKVGKD   77 (120)
T ss_pred             EEEECCCCCCC
Confidence            99999987765

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=98.26  E-value=4.4e-07  Score=72.50  Aligned_cols=75  Identities=9%  Similarity=0.064  Sum_probs=53.0

Q ss_pred             CCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEee-cCCCCChhhhhhhhhhcCCCCcccee
Q 043301          151 NPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTIS-ESYPYSDDTLAQFILRLQNSLRSKNM  229 (244)
Q Consensus       151 ~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (244)
                      +.|.++|-+|. .+--++ -|-+|||+++.         +.. .+++|++... ..+|.|||   +|.|.+.++.  ..|
T Consensus         2 g~L~v~v~~Ak-~l~~~~-~g~sDPYv~i~---------lg~-~~~kT~v~~~~~~nP~WNe---~F~f~v~~~~--~~l   64 (121)
T cd04016           2 GRLSITVVQAK-LVKNYG-LTRMDPYCRIR---------VGH-AVYETPTAYNGAKNPRWNK---TIQCTLPEGV--DSI   64 (121)
T ss_pred             cEEEEEEEEcc-CCCcCC-CCCCCceEEEE---------ECC-EEEEeEEccCCCCCCccCe---EEEEEecCCC--cEE
Confidence            35668899997 444444 68899998843         433 2456773334 46888887   6999987642  569


Q ss_pred             EEEEeccCccccc
Q 043301          230 SVEFWDLDDVLVN  242 (244)
Q Consensus       230 ~~~~~~~~~~~~~  242 (244)
                      .|||||.|..+++
T Consensus        65 ~~~V~d~d~~~~d   77 (121)
T cd04016          65 YIEIFDERAFTMD   77 (121)
T ss_pred             EEEEEeCCCCcCC
Confidence            9999999998765

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.26  E-value=6.6e-07  Score=85.47  Aligned_cols=82  Identities=17%  Similarity=0.211  Sum_probs=66.7

Q ss_pred             ccCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc--CCCCceeEeecCCCCChhhhhhhhhhcCCC-Cc
Q 043301          149 ERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET--GDQGSKVTISESYPYSDDTLAQFILRLQNS-LR  225 (244)
Q Consensus       149 ~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~  225 (244)
                      .-+.|.++|.++. .|-+||..|.+|||++         .-|-|+  .+-+|+..-.+++|.|||   +|.|.+..+ ..
T Consensus       165 ~~~~L~V~V~qa~-~Lp~~d~~g~sdpyVK---------~~llPdk~~k~kT~v~r~tlnP~fnE---tf~f~v~~~~l~  231 (421)
T KOG1028|consen  165 ELNLLTVRVIQAH-DLPAKDRGGTSDPYVK---------VYLLPDKKGKFKTRVHRKTLNPVFNE---TFRFEVPYEELS  231 (421)
T ss_pred             cCCEEEEEEEEec-CCCcccCCCCCCCeeE---------EEEcCCCCCcceeeeeecCcCCcccc---ceEeecCHHHhc
Confidence            4667889999997 5899998899999987         555555  455666444578899998   699996666 88


Q ss_pred             cceeEEEEeccCcccccC
Q 043301          226 SKNMSVEFWDLDDVLVNV  243 (244)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~  243 (244)
                      .+.|.+-|||.||.|||-
T Consensus       232 ~~~L~l~V~~~drfsr~~  249 (421)
T KOG1028|consen  232 NRVLHLSVYDFDRFSRHD  249 (421)
T ss_pred             cCEEEEEEEecCCccccc
Confidence            899999999999999984

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=98.23  E-value=8.3e-07  Score=68.76  Aligned_cols=75  Identities=16%  Similarity=0.127  Sum_probs=54.6

Q ss_pred             ceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEEE
Q 043301          154 DLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEF  233 (244)
Q Consensus       154 ~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (244)
                      .++|-+|. +|-+++.+|..|||+++.         +....-.+|+..-.+.+|.|||   +|.|.+... .++.|.|+|
T Consensus         2 ~v~vi~a~-~L~~~~~~~~~dpyv~v~---------~~~~~~~~T~v~~~~~~P~Wne---~f~~~~~~~-~~~~l~~~v   67 (115)
T cd04040           2 TVDVISAE-NLPSADRNGKSDPFVKFY---------LNGEKVFKTKTIKKTLNPVWNE---SFEVPVPSR-VRAVLKVEV   67 (115)
T ss_pred             EEEEEeee-CCCCCCCCCCCCCeEEEE---------ECCCcceeeceecCCCCCcccc---cEEEEeccC-CCCEEEEEE
Confidence            46788886 478888889999997744         2222234566444567788887   699888655 678999999


Q ss_pred             eccCccccc
Q 043301          234 WDLDDVLVN  242 (244)
Q Consensus       234 ~~~~~~~~~  242 (244)
                      ||+|..+++
T Consensus        68 ~d~~~~~~~   76 (115)
T cd04040          68 YDWDRGGKD   76 (115)
T ss_pred             EeCCCCCCC
Confidence            999987654

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=98.23  E-value=6.7e-07  Score=69.59  Aligned_cols=74  Identities=12%  Similarity=0.078  Sum_probs=54.3

Q ss_pred             CcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEE
Q 043301          152 PEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSV  231 (244)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (244)
                      .+.+.|.+|. +|-++|.++.+|||++++         +.. ...+|+++-.+.+|.|||   +|.|.+..  ..+-|.|
T Consensus         2 ~l~v~v~~a~-~L~~~~~~~~~dPyv~v~---------~~~-~~~~T~~~~~t~nP~W~e---~f~~~~~~--~~~~l~~   65 (119)
T cd08377           2 FLQVKVIRAS-GLAAADIGGKSDPFCVLE---------LVN-ARLQTHTIYKTLNPEWNK---IFTFPIKD--IHDVLEV   65 (119)
T ss_pred             EEEEEEEeee-CCCCCCCCCCCCcEEEEE---------ECC-EeeecceecCCcCCccCc---EEEEEecC--cCCEEEE
Confidence            4568889997 488899999999998754         111 124666444567888887   69888753  4578999


Q ss_pred             EEeccCcccc
Q 043301          232 EFWDLDDVLV  241 (244)
Q Consensus       232 ~~~~~~~~~~  241 (244)
                      +|||||..+.
T Consensus        66 ~v~d~~~~~~   75 (119)
T cd08377          66 TVYDEDKDKK   75 (119)
T ss_pred             EEEECCCCCC
Confidence            9999998654

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines

Probab=98.22  E-value=7.6e-07  Score=54.25  Aligned_cols=29  Identities=38%  Similarity=1.039  Sum_probs=27.3

Q ss_pred             ccccccccCCCCC-cEEeCCCCCccccccc
Q 043301           33 IICDICETSLQGP-AYGCGTCEFSIHKSCA   61 (244)
Q Consensus        33 ~~C~~C~~~i~g~-~Y~C~~C~F~lH~~Ca   61 (244)
                      +.|++|++.+.|+ +|+|..|+|.+|.+||
T Consensus         1 ~~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca   30 (30)
T PF03107_consen    1 FWCDVCRRKIDGFYFYHCSECCFTLHVRCA   30 (30)
T ss_pred             CCCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence            4699999999999 9999999999999997

The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=98.22  E-value=7.6e-07  Score=70.18  Aligned_cols=77  Identities=9%  Similarity=0.064  Sum_probs=57.5

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEee-cCCCCChhhhhhhhhhcCCC---Cccce
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTIS-ESYPYSDDTLAQFILRLQNS---LRSKN  228 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~---~~~~~  228 (244)
                      |.++|.+|. +|-.++..|-.|||+.         ..+....+++|++... +.+|.|||   .|.|.+.+.   +....
T Consensus         2 L~V~V~sA~-~L~~~~~~~~~dpYv~---------v~~~~~~~~~T~~~~~~~~~P~Wne---~f~f~v~~~~~~~~~~~   68 (125)
T cd04051           2 LEITIISAE-DLKNVNLFGKMKVYAV---------VWIDPSHKQSTPVDRDGGTNPTWNE---TLRFPLDERLLQQGRLA   68 (125)
T ss_pred             EEEEEEEcc-cCCCCCcccCCceEEE---------EEECCCcccccccccCCCCCCCCCC---EEEEEcChHhcccCccE
Confidence            568888997 4788888888999977         3444444566663333 57888888   699998776   45899


Q ss_pred             eEEEEeccCccccc
Q 043301          229 MSVEFWDLDDVLVN  242 (244)
Q Consensus       229 ~~~~~~~~~~~~~~  242 (244)
                      |.|||||+++.+.+
T Consensus        69 l~~~v~d~~~~~~~   82 (125)
T cd04051          69 LTIEVYCERPSLGD   82 (125)
T ss_pred             EEEEEEECCCCCCC
Confidence            99999999985544

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=98.21  E-value=6e-07  Score=74.61  Aligned_cols=58  Identities=14%  Similarity=0.133  Sum_probs=38.7

Q ss_pred             CCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEEEeccCccc
Q 043301          169 RNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVL  240 (244)
Q Consensus       169 ~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (244)
                      -.|.+|||++++         +......+|++.-.+.+|.|||   +|.|.+..  ....|.|+|||||..+
T Consensus        54 ~~g~sDPYv~V~---------l~~~~~~rT~v~~~~~nP~WnE---~F~~~~~~--~~~~l~~~V~d~d~~~  111 (158)
T cd04015          54 GKITSDPYATVD---------LAGARVARTRVIENSENPVWNE---SFHIYCAH--YASHVEFTVKDNDVVG  111 (158)
T ss_pred             CCCCcCeEEEEE---------ECCeEeeEEEEeCCCCCCccce---EEEEEccC--CCCEEEEEEEeCCCcC
Confidence            456789997743         3333234677433366777777   68887653  3467999999999754

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines

Probab=98.21  E-value=3.1e-07  Score=55.86  Aligned_cols=29  Identities=48%  Similarity=1.100  Sum_probs=14.2

Q ss_pred             ccccccccCCCC-eeEEcCCccceeccccc
Q 043301           84 HRCDACLDECSG-MAYRCHECCYNLHYHCT  112 (244)
Q Consensus        84 ~~Cd~Cg~~~~g-~~Y~C~~Cd~~lH~~Ca  112 (244)
                      +.|++|++.+.+ +.|.|.+|||++|..||
T Consensus         1 ~~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca   30 (30)
T PF07649_consen    1 FRCDACGKPIDGGWFYRCSECDFDLHEECA   30 (30)
T ss_dssp             ---TTTS----S--EEE-TTT-----HHHH
T ss_pred             CcCCcCCCcCCCCceEECccCCCccChhcC
Confidence            369999999888 99999999999999996

The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=98.21  E-value=5.1e-07  Score=72.09  Aligned_cols=75  Identities=12%  Similarity=0.203  Sum_probs=52.2

Q ss_pred             CcceeeecccccccccCC----------CCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcC
Q 043301          152 PEDLTFHDVFSSFTEKDR----------NQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQ  221 (244)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~----------n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  221 (244)
                      .|.++|.+|.+ |.++|.          +|..|||++++         +......+|++.-.+.+|.|||   +|.|.+.
T Consensus         5 ~l~V~v~~a~~-L~~~d~~~~~~~~~~~~g~~dpyv~v~---------~~~~~~~kT~~~~~t~~P~Wne---~f~~~v~   71 (132)
T cd04014           5 TLKIKICEAVD-LKPTDWSTRHAVPKKGSQLLDPYVSID---------VDDTHIGKTSTKPKTNSPVWNE---EFTTEVH   71 (132)
T ss_pred             EEEEEEEEecC-CCCCCchhhhcccccCccCcCcEEEEE---------ECCEEEeEEeEcCCCCCCCcce---eEEEEcC
Confidence            35588899974 788885          37899998744         3322223455323367788887   6999986


Q ss_pred             CCCccceeEEEEeccCccccc
Q 043301          222 NSLRSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~  242 (244)
                         .++.|.|+|||+|..+.+
T Consensus        72 ---~~~~l~~~v~d~~~~~~~   89 (132)
T cd04014          72 ---NGRNLELTVFHDAAIGPD   89 (132)
T ss_pred             ---CCCEEEEEEEeCCCCCCC
Confidence               458999999999876543

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=98.20  E-value=1.1e-06  Score=68.04  Aligned_cols=70  Identities=11%  Similarity=0.213  Sum_probs=50.6

Q ss_pred             eeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCC---ccceeEE
Q 043301          155 LTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSL---RSKNMSV  231 (244)
Q Consensus       155 ~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  231 (244)
                      +.|-+|.+ |.    +|..|||+++.         +..+ +++|++.-.+.+|.|||   +|.|.+....   .+..|.|
T Consensus         8 V~v~~a~~-L~----~~~~dpyv~v~---------~~~~-~~kT~~~~~t~nP~wne---~f~f~~~~~~~~l~~~~l~i   69 (111)
T cd04011           8 VRVIEARQ-LV----GGNIDPVVKVE---------VGGQ-KKYTSVKKGTNCPFYNE---YFFFNFHESPDELFDKIIKI   69 (111)
T ss_pred             EEEEEccc-CC----CCCCCCEEEEE---------ECCE-eeeeeEEeccCCCcccc---EEEEecCCCHHHHhcCeEEE
Confidence            78888875 43    78899998743         4433 45677444466899998   6998875432   4678999


Q ss_pred             EEeccCccccc
Q 043301          232 EFWDLDDVLVN  242 (244)
Q Consensus       232 ~~~~~~~~~~~  242 (244)
                      +|||+|+.++|
T Consensus        70 ~V~d~~~~~~~   80 (111)
T cd04011          70 SVYDSRSLRSD   80 (111)
T ss_pred             EEEcCcccccC
Confidence            99999987664

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=98.19  E-value=8.2e-07  Score=70.69  Aligned_cols=70  Identities=21%  Similarity=0.335  Sum_probs=51.7

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE  232 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (244)
                      |.++|-.|. .|..+|.+|.+|||+++.         +.. ...+|+++-.+.+|.|||   .|.|.+...  ++.|.|+
T Consensus         3 L~V~vi~a~-~L~~~d~~g~~DPyv~v~---------~~~-~~~kT~~v~~t~~P~Wne---~f~f~~~~~--~~~l~i~   66 (127)
T cd04027           3 ISITVVCAQ-GLIAKDKTGTSDPYVTVQ---------VGK-TKKRTKTIPQNLNPVWNE---KFHFECHNS--SDRIKVR   66 (127)
T ss_pred             EEEEEEECc-CCcCCCCCCCcCcEEEEE---------ECC-EeeecceecCCCCCccce---EEEEEecCC--CCEEEEE
Confidence            457788886 488999999999998755         211 235666544578888887   688877543  4689999


Q ss_pred             EeccCc
Q 043301          233 FWDLDD  238 (244)
Q Consensus       233 ~~~~~~  238 (244)
                      |||||.
T Consensus        67 v~d~d~   72 (127)
T cd04027          67 VWDEDD   72 (127)
T ss_pred             EEECCC
Confidence            999995

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.18  E-value=6.7e-07  Score=85.41  Aligned_cols=85  Identities=12%  Similarity=0.187  Sum_probs=66.4

Q ss_pred             ccCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccc-
Q 043301          149 ERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSK-  227 (244)
Q Consensus       149 ~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-  227 (244)
                      ..+.+++.|-+|++ |-.||-+|++|||+++-     +...-....+++|...-...||+|||   +|+|++.+++.++ 
T Consensus       296 ~~g~ltv~v~kar~-L~~~~~~~~~d~~Vk~~-----l~~~~~~~~kkkT~~~~~~~npv~ne---sf~F~vp~~~l~~~  366 (421)
T KOG1028|consen  296 TAGRLTVVVIKARN-LKSMDVGGLSDPYVKVT-----LLDGDKRLSKKKTSVKKKTLNPVFNE---TFVFDVPPEQLAEV  366 (421)
T ss_pred             CCCeEEEEEEEecC-CCcccCCCCCCccEEEE-----EecCCceeeeeeeecccCCCCCcccc---cEEEeCCHHHhhee
Confidence            46789999999985 89999999999998833     22222333566666555588899998   6999998886665 


Q ss_pred             eeEEEEeccCccccc
Q 043301          228 NMSVEFWDLDDVLVN  242 (244)
Q Consensus       228 ~~~~~~~~~~~~~~~  242 (244)
                      -|.|+|||+|+..+|
T Consensus       367 ~l~l~V~d~d~~~~~  381 (421)
T KOG1028|consen  367 SLELTVWDHDTLGSN  381 (421)
T ss_pred             EEEEEEEEccccccc
Confidence            688899999999998

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=98.16  E-value=1.2e-06  Score=68.96  Aligned_cols=77  Identities=13%  Similarity=0.108  Sum_probs=56.1

Q ss_pred             CcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEee-cCCCCChhhhhhhhhhcCCCC--ccce
Q 043301          152 PEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTIS-ESYPYSDDTLAQFILRLQNSL--RSKN  228 (244)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~--~~~~  228 (244)
                      .|.++|-+|. +|.+++..+..|||+++.         +.. ..++|+++.. +.+|.|||   .|.|.+....  .++.
T Consensus         2 ~L~V~V~~A~-~L~~~~~~~~~dpyv~v~---------~~~-~~~~T~~~~~~t~nP~Wne---~f~f~v~~~~~~~~~~   67 (124)
T cd04049           2 TLEVLLISAK-GLQDTDFLGKIDPYVIIQ---------CRT-QERKSKVAKGDGRNPEWNE---KFKFTVEYPGWGGDTK   67 (124)
T ss_pred             eEEEEEEecC-CCCCCCCCCCcCceEEEE---------ECC-EeeeeeEcCCCCCCCcccc---eEEEEecCcccCCCCE
Confidence            4568899997 488899888999998854         211 1235553332 57888888   6999988774  4789


Q ss_pred             eEEEEeccCccccc
Q 043301          229 MSVEFWDLDDVLVN  242 (244)
Q Consensus       229 ~~~~~~~~~~~~~~  242 (244)
                      |.|+|||+|...++
T Consensus        68 l~v~V~d~~~~~~d   81 (124)
T cd04049          68 LILRIMDKDNFSDD   81 (124)
T ss_pred             EEEEEEECccCCCC
Confidence            99999999987653

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=98.11  E-value=1.7e-06  Score=67.65  Aligned_cols=75  Identities=13%  Similarity=0.140  Sum_probs=52.9

Q ss_pred             cceeeecccccccccC-CCCcchhhHHHHhhhhcccccccc-cCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeE
Q 043301          153 EDLTFHDVFSSFTEKD-RNQLDDITENIESEIAGIKKTLSE-TGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMS  230 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~-~n~l~d~~~~~~~~~~~~~~~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (244)
                      +.++|.+|.+ |-.++ .+|..|||+.+.         +.. ....+|++.-.+.+|.|||   .|.|.+.  ..+..|.
T Consensus         4 l~v~v~~a~~-L~~~~~~~~~~dpyv~v~---------~~~~~~~~kT~~~~~~~~P~Wne---~~~~~v~--~~~~~l~   68 (124)
T cd04044           4 LAVTIKSARG-LKGSDIIGGTVDPYVTFS---------ISNRRELARTKVKKDTSNPVWNE---TKYILVN--SLTEPLN   68 (124)
T ss_pred             EEEEEEcccC-CCcccccCCCCCCeEEEE---------ECCCCcceEeeeecCCCCCcceE---EEEEEeC--CCCCEEE
Confidence            5577888874 55555 567789997744         332 2345666444577888887   6888877  5678999


Q ss_pred             EEEeccCccccc
Q 043301          231 VEFWDLDDVLVN  242 (244)
Q Consensus       231 ~~~~~~~~~~~~  242 (244)
                      |+|||+|..+++
T Consensus        69 ~~v~d~~~~~~d   80 (124)
T cd04044          69 LTVYDFNDKRKD   80 (124)
T ss_pred             EEEEecCCCCCC
Confidence            999999987543

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=98.10  E-value=4.4e-07  Score=65.21  Aligned_cols=76  Identities=22%  Similarity=0.312  Sum_probs=54.2

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCC--CCceeEeecCCCCChhhhhhhhhhcCCCCccceeE
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGD--QGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMS  230 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (244)
                      |.+.|..|.+ |...+.++..|||+++.         +.....  .+|+..-.+.+|.|+|   +|.|.+...+.+. |.
T Consensus         1 L~v~I~~a~~-L~~~~~~~~~~~yv~v~---------~~~~~~~~~~T~~~~~~~~P~w~e---~~~~~~~~~~~~~-l~   66 (85)
T PF00168_consen    1 LTVTIHSARN-LPSKDSNGKPDPYVRVS---------VNGSESTKYKTKVKKNTSNPVWNE---EFEFPLDDPDLDS-LS   66 (85)
T ss_dssp             EEEEEEEEES-SSSSSTTSSBEEEEEEE---------EETTTCEEEEECCBSSBSSEEEEE---EEEEEESHGCGTE-EE
T ss_pred             CEEEEEEEEC-CCCcccCCcccccceee---------cceeeeeeeeeeeeeccccceeee---eeeeeeecccccc-eE
Confidence            4578888874 78878888999997744         332222  4455333356666665   7999977777777 99


Q ss_pred             EEEeccCccccc
Q 043301          231 VEFWDLDDVLVN  242 (244)
Q Consensus       231 ~~~~~~~~~~~~  242 (244)
                      |+|||++...+|
T Consensus        67 ~~V~~~~~~~~~   78 (85)
T PF00168_consen   67 FEVWDKDSFGKD   78 (85)
T ss_dssp             EEEEEETSSSSE
T ss_pred             EEEEECCCCCCC
Confidence            999999998754

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=98.08  E-value=1.7e-06  Score=67.27  Aligned_cols=72  Identities=14%  Similarity=0.184  Sum_probs=51.8

Q ss_pred             cceeeecccccccccCC------CCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCcc
Q 043301          153 EDLTFHDVFSSFTEKDR------NQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRS  226 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~------n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  226 (244)
                      +.+.|-+|. +|.++|.      +|.+|||++++         +.. ...+|++.-.+.+|.|||   .|.|.+.. ...
T Consensus         3 l~v~v~~a~-~L~~~d~~~~~~~~g~~dPyv~v~---------~~~-~~~kT~~~~~t~~P~W~e---~f~~~v~~-~~~   67 (121)
T cd08391           3 LRIHVIEAQ-DLVAKDKFVGGLVKGKSDPYVIVR---------VGA-QTFKSKVIKENLNPKWNE---VYEAVVDE-VPG   67 (121)
T ss_pred             EEEEEEEcc-CCcccccccccCCCCCcCCEEEEE---------ECC-EeEEccccCCCCCCcccc---eEEEEeCC-CCC
Confidence            557888997 4788874      47899998854         221 234566444577888888   58877754 356


Q ss_pred             ceeEEEEeccCcc
Q 043301          227 KNMSVEFWDLDDV  239 (244)
Q Consensus       227 ~~~~~~~~~~~~~  239 (244)
                      +.|.|+|||+|..
T Consensus        68 ~~l~i~v~d~~~~   80 (121)
T cd08391          68 QELEIELFDEDPD   80 (121)
T ss_pred             CEEEEEEEecCCC
Confidence            8999999999976

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.07  E-value=4.3e-07  Score=89.87  Aligned_cols=95  Identities=19%  Similarity=0.354  Sum_probs=71.7

Q ss_pred             cccccccccccCCCC---CcEEeCCCCCccccccccCCCc---------CCC------CCC--CCcceEeec-Ccccccc
Q 043301           30 DVVIICDICETSLQG---PAYGCGTCEFSIHKSCAELPLK---------IDH------PFH--CHPLTLSKT-NHHRCDA   88 (244)
Q Consensus        30 ~~~~~C~~C~~~i~g---~~Y~C~~C~F~lH~~Ca~~p~~---------i~h------p~H--~H~L~L~~~-~~~~Cd~   88 (244)
                      .-+++|+.|+++|||   .+|+|++|.+++|++|+.+...         ..+      ..+  +|.+..+.+ .+++|++
T Consensus       167 ~Qpt~Cs~C~kFi~gL~kqGyQCqvC~~vvHKkCh~kvv~~C~~~~~~n~e~q~~~~~~~~~~Phrf~~~~~q~ptFc~h  246 (694)
T KOG0694|consen  167 RQPTFCSWCQKFIWGLRKQGYQCQVCWRVVHKKCHVKVVTLCDFLDNLNSEPQGFLFEFTFRNPHRFVKLNRQRPTFCDH  246 (694)
T ss_pred             cCcchhhhhhhheeccCCCceEEeeeeehHhhhhHHHHHHhccCcCccCcCCccccccccccCCCcchhhhccCccHHHh
Confidence            347899999999998   3899999999999999985311         000      222  354444444 8999999


Q ss_pred             cccCCCCe---eEEcCCccceeccccccCcCccccCccccC
Q 043301           89 CLDECSGM---AYRCHECCYNLHYHCTALKPSINFKELKCV  126 (244)
Q Consensus        89 Cg~~~~g~---~Y~C~~Cd~~lH~~Ca~~p~~i~~~~~~h~  126 (244)
                      ||+.+.+.   ..+|..|+.++|.+|+......  +++...
T Consensus       247 CGs~L~r~~qqGlkCs~Cg~n~H~~c~~~va~~--CG~s~t  285 (694)
T KOG0694|consen  247 CGSVLYRLRQQGLKCSTCGRNVHNRCVENLAPN--CGGSRT  285 (694)
T ss_pred             cchhhhhhcccCeeehhhhccccHHHHHhcccC--CCCchh
Confidence            99987665   5899999999999999888665  665444

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=98.07  E-value=1.4e-06  Score=68.40  Aligned_cols=69  Identities=14%  Similarity=0.098  Sum_probs=45.7

Q ss_pred             cccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEEEeccCc
Q 043301          163 SFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDD  238 (244)
Q Consensus       163 ~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (244)
                      +|.++|..|.+|||+++...-...   -......+|..+-.+.+|.|||   +|.|.+..+ ....|.+||||||.
T Consensus        11 ~L~~~d~~g~~DPyv~v~~~~~~~---~~~~~~~kT~vi~~t~nP~wne---~f~f~~~~~-~~~~l~~~V~d~d~   79 (120)
T cd04048          11 NLLDKDVLSKSDPFVVVYVKTGGS---GQWVEIGRTEVIKNNLNPDFVT---TFTVDYYFE-EVQKLRFEVYDVDS   79 (120)
T ss_pred             CCCCCCCCCCCCcEEEEEEEcCCC---CceEEeccEeEeCCCCCCCceE---EEEEEEEeE-eeeEEEEEEEEecC
Confidence            478889999999998744111000   0011246777444577888887   698886543 44579999999996

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=98.04  E-value=2.7e-06  Score=69.34  Aligned_cols=71  Identities=13%  Similarity=0.027  Sum_probs=50.8

Q ss_pred             ceeeecccccccccCCCCcchhhHHHHhhhhccccccccc------------CCCCceeEeecCCCCC-hhhhhhhhhhc
Q 043301          154 DLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET------------GDQGSKVTISESYPYS-DDTLAQFILRL  220 (244)
Q Consensus       154 ~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~------------~~~~~~~~i~~~~~~~-~~~~~~~~~~~  220 (244)
                      .+++-.|.+ | ++|--|..|||+++.         +.+.            ..++|+++..+.+|.| ||   +|.|.+
T Consensus         4 ~~~~~~A~~-L-~~~~fg~~DPyvki~---------~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE---~f~f~v   69 (137)
T cd08691           4 SLSGLQARN-L-KKGMFFNPDPYVKIS---------IQPGKRHIFPALPHHGQECRTSIVENTINPVWHRE---QFVFVG   69 (137)
T ss_pred             EEEEEEeCC-C-CCccCCCCCceEEEE---------EECCCcccccccccccceeeeeeEcCCCCCceEce---EEEEEc
Confidence            467778864 5 477778999998744         3332            2467775555778888 77   699988


Q ss_pred             CCCCccceeEEEEeccCcccc
Q 043301          221 QNSLRSKNMSVEFWDLDDVLV  241 (244)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~  241 (244)
                      .++   ..|.|||||++..++
T Consensus        70 ~~~---~~L~v~V~D~~~~~~   87 (137)
T cd08691          70 LPT---DVLEIEVKDKFAKSR   87 (137)
T ss_pred             CCC---CEEEEEEEecCCCCC
Confidence            654   479999999986544

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=98.03  E-value=3e-06  Score=65.62  Aligned_cols=73  Identities=12%  Similarity=0.032  Sum_probs=51.0

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCc-cceeEE
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLR-SKNMSV  231 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  231 (244)
                      |.++|.+|.+ |..+   |.+|||+.++         +......+|++.-. .+|.|||   +|.|.+.+++. .++|.|
T Consensus         2 L~v~vi~a~~-l~~~---~~~dpyv~v~---------~~~~~~~kT~~~~~-~~P~Wne---~f~f~v~~~~~~~~~l~i   64 (117)
T cd08383           2 LRLRILEAKN-LPSK---GTRDPYCTVS---------LDQVEVARTKTVEK-LNPFWGE---EFVFDDPPPDVTFFTLSF   64 (117)
T ss_pred             eEEEEEEecC-CCcC---CCCCceEEEE---------ECCEEeEecceEEC-CCCcccc---eEEEecCCccccEEEEEE
Confidence            4577888874 5554   7899998743         33333346664444 7888887   69999988764 588999


Q ss_pred             EEeccCccccc
Q 043301          232 EFWDLDDVLVN  242 (244)
Q Consensus       232 ~~~~~~~~~~~  242 (244)
                      +|||.+..+.+
T Consensus        65 ~v~d~~~~~~~   75 (117)
T cd08383          65 YNKDKRSKDRD   75 (117)
T ss_pred             EEEecccCCCe
Confidence            99998865443

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=98.02  E-value=3.3e-06  Score=67.20  Aligned_cols=73  Identities=10%  Similarity=0.215  Sum_probs=51.1

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE  232 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (244)
                      |.+++..|.  +.+.+-.+..|||+.+.         +......+|++.-.+.+|.|||   .|.|.+.+   .+.|.|+
T Consensus         4 L~V~i~~a~--l~~~~~~~~~dPyv~v~---------~~~~~~~kT~v~~~t~~P~Wne---~f~~~~~~---~~~l~~~   66 (125)
T cd04021           4 LQITVESAK--LKSNSKSFKPDPYVEVT---------VDGQPPKKTEVSKKTSNPKWNE---HFTVLVTP---QSTLEFK   66 (125)
T ss_pred             EEEEEEeeE--CCCCCcCCCCCeEEEEE---------ECCcccEEeeeeCCCCCCcccc---EEEEEeCC---CCEEEEE
Confidence            457778774  56666677899998744         2222245666444567888887   68888764   4689999


Q ss_pred             EeccCccccc
Q 043301          233 FWDLDDVLVN  242 (244)
Q Consensus       233 ~~~~~~~~~~  242 (244)
                      |||+|..+.+
T Consensus        67 V~d~~~~~~~   76 (125)
T cd04021          67 VWSHHTLKAD   76 (125)
T ss_pred             EEeCCCCCCC
Confidence            9999987654

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines

Probab=98.02  E-value=3.6e-06  Score=51.24  Aligned_cols=29  Identities=41%  Similarity=1.189  Sum_probs=27.1

Q ss_pred             ccccccccCCCCe-eEEcCCccceeccccc
Q 043301           84 HRCDACLDECSGM-AYRCHECCYNLHYHCT  112 (244)
Q Consensus        84 ~~Cd~Cg~~~~g~-~Y~C~~Cd~~lH~~Ca  112 (244)
                      ..|++|++.+.|+ +|+|..|+|.+|.+||
T Consensus         1 ~~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca   30 (30)
T PF03107_consen    1 FWCDVCRRKIDGFYFYHCSECCFTLHVRCA   30 (30)
T ss_pred             CCCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence            3699999999999 9999999999999997

The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=98.00  E-value=3.3e-06  Score=66.93  Aligned_cols=68  Identities=16%  Similarity=0.242  Sum_probs=49.2

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE  232 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (244)
                      |.+.|-+|.+ |.++    .+|||+++.         +.. ...+|+++-.+.+|.|||   +|.|.+.. ..+..|.++
T Consensus         2 L~V~Vi~a~~-L~~~----~~Dpyv~v~---------l~~-~~~kT~v~~~t~nP~Wne---~F~f~~~~-~~~~~L~~~   62 (121)
T cd08378           2 LYVRVVKARG-LPAN----SNDPVVEVK---------LGN-YKGSTKAIERTSNPEWNQ---VFAFSKDR-LQGSTLEVS   62 (121)
T ss_pred             EEEEEEEecC-CCcc----cCCCEEEEE---------ECC-ccccccccCCCCCCccce---EEEEEcCC-CcCCEEEEE
Confidence            4578888874 6776    689998744         322 456777444477888888   69998643 267889999


Q ss_pred             EeccCcc
Q 043301          233 FWDLDDV  239 (244)
Q Consensus       233 ~~~~~~~  239 (244)
                      |||+|..
T Consensus        63 v~d~d~~   69 (121)
T cd08378          63 VWDKDKA   69 (121)
T ss_pred             EEeCCCC
Confidence            9999975

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=97.94  E-value=4.2e-06  Score=69.80  Aligned_cols=76  Identities=11%  Similarity=0.090  Sum_probs=52.0

Q ss_pred             ceeeecccccccccCCCCcchhhHHHHhhhhccccccc--ccCCCCceeEeecCCCCChhhhhhhhhhcCCCC-------
Q 043301          154 DLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLS--ETGDQGSKVTISESYPYSDDTLAQFILRLQNSL-------  224 (244)
Q Consensus       154 ~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------  224 (244)
                      .+..+.++. +.+.+.+|-+|||+++.       ..+.  ...+.+|++.-.+++|.|||   +|+|.+...+       
T Consensus         7 ~i~~~~~~~-l~~~~~~~~~DpYVk~~-------l~~p~~~~~k~KT~v~k~TlnPvfNE---~f~f~I~~~~~~~~R~l   75 (155)
T cd08690           7 TIVRCIGIP-LPSGWNPKDLDTYVKFE-------FPYPNEEPQSGKTSTIKDTNSPEYNE---SFKLNINRKHRSFQRVF   75 (155)
T ss_pred             EEEEeeccc-cCCCcCCCCCCeEEEEE-------EecCCCCCceeecCcccCCCCCcccc---eEEEEeccccchhhhhc
Confidence            355555553 78888899999998843       1112  22466777444578888887   6999985553       


Q ss_pred             ccceeEEEEeccCccc
Q 043301          225 RSKNMSVEFWDLDDVL  240 (244)
Q Consensus       225 ~~~~~~~~~~~~~~~~  240 (244)
                      +.+-|.+||||.|..+
T Consensus        76 ~~~~L~~~V~d~~~f~   91 (155)
T cd08690          76 KRHGLKFEVYHKGGFL   91 (155)
T ss_pred             cCCcEEEEEEeCCCcc
Confidence            2455999999999753

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.93  E-value=4.2e-07  Score=89.42  Aligned_cols=151  Identities=20%  Similarity=0.288  Sum_probs=96.3

Q ss_pred             CCcceEeec-CcccccccccCCCCe---eEEcCCccceeccccccCcCcc-----ccCccccCCcCccccccccCCCCcE
Q 043301           73 CHPLTLSKT-NHHRCDACLDECSGM---AYRCHECCYNLHYHCTALKPSI-----NFKELKCVLHEVMQSLLEKQPQDVE  143 (244)
Q Consensus        73 ~H~L~L~~~-~~~~Cd~Cg~~~~g~---~Y~C~~Cd~~lH~~Ca~~p~~i-----~~~~~~h~~H~h~l~L~~~~p~~~~  143 (244)
                      +|-|...+. .+++|-.|...+.|.   +++|..|...+|-.|..+...=     .-...+|.+-.-..+|.-.-..+..
T Consensus       172 phnf~~~t~~tpt~cyecegllwglarqglrctqc~vk~hdkc~ell~adclqraaeks~khg~~drtq~lv~~irdrmk  251 (1283)
T KOG1011|consen  172 PHNFATTTFQTPTFCYECEGLLWGLARQGLRCTQCQVKVHDKCRELLSADCLQRAAEKSTKHGEADRTQSLVNVIRDRMK  251 (1283)
T ss_pred             CCceeeeeccCCchhhhhhhHHHHHhhcccchhhccccHHHHHHHHhhhHHHHHHHHhhccccchhhHHHHHHHHHHHHH
Confidence            677777666 899999999987765   5999999999999997654210     0012244433222222211101111


Q ss_pred             EE------------EEe-----------------------c-cCCcceeeecccccccccCCCCcchhhHHHHhhhhccc
Q 043301          144 LR------------TIQ-----------------------E-RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIK  187 (244)
Q Consensus       144 ~~------------~~~-----------------------~-~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~  187 (244)
                      |+            .+.                       . .-.|+++|--|- -|++.|..|-||||+..+       
T Consensus       252 i~e~nkpevfq~ir~vf~v~~~~~~e~lktvk~silegsskwsakitltvlcaq-gl~akdktg~sdpyvt~q-------  323 (1283)
T KOG1011|consen  252 IQEQNKPEVFQMIRTVFDVDENIQKETLKTVKASILEGSSKWSAKITLTVLCAQ-GLIAKDKTGKSDPYVTAQ-------  323 (1283)
T ss_pred             HHhhcChHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccccccceeeEEeeeecc-cceecccCCCCCCcEEEe-------
Confidence            11            000                       0 124556666665 489999999999998754       


Q ss_pred             ccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEEEeccCcc
Q 043301          188 KTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDV  239 (244)
Q Consensus       188 ~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (244)
                         -.+.+..|+++.-++||+|||   .|-|.-.++  .-|+-|.|||=|..
T Consensus       324 ---v~ktkrrtrti~~~lnpvw~e---kfhfechns--tdrikvrvwded~d  367 (1283)
T KOG1011|consen  324 ---VGKTKRRTRTIHQELNPVWNE---KFHFECHNS--TDRIKVRVWDEDND  367 (1283)
T ss_pred             ---ecccchhhHhhhhccchhhhh---heeeeecCC--CceeEEEEecCccc
Confidence               113456677666688899998   588776654  56899999998753

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=97.91  E-value=6.4e-06  Score=65.21  Aligned_cols=60  Identities=15%  Similarity=0.140  Sum_probs=44.8

Q ss_pred             CCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCC-CccceeEEEEeccCcccc
Q 043301          169 RNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNS-LRSKNMSVEFWDLDDVLV  241 (244)
Q Consensus       169 ~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  241 (244)
                      ..|.+|||+++.         +.. .+.+|+++-.+.+|.|||   .|.|.+... +..+.|.|+|||||+.++
T Consensus        11 ~~g~~Dpyv~v~---------~~~-~~~kT~v~~~~~nP~Wne---~f~f~~~~~~~~~~~l~~~v~d~~~~~~   71 (127)
T cd08373          11 LKGKGDRIAKVT---------FRG-VKKKTRVLENELNPVWNE---TFEWPLAGSPDPDESLEIVVKDYEKVGR   71 (127)
T ss_pred             cCCCCCCEEEEE---------ECC-EeeecceeCCCcCCcccc---eEEEEeCCCcCCCCEEEEEEEECCCCCC
Confidence            678899998754         221 235677444577888887   699999765 678999999999998764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=97.86  E-value=9.2e-06  Score=63.74  Aligned_cols=73  Identities=11%  Similarity=0.129  Sum_probs=51.1

Q ss_pred             cceeeecccccccccC--CCCcchhhHHHHhhhhcccccccc-----cCCCCceeEeecC-CCCChhhhhhhhhhcCCCC
Q 043301          153 EDLTFHDVFSSFTEKD--RNQLDDITENIESEIAGIKKTLSE-----TGDQGSKVTISES-YPYSDDTLAQFILRLQNSL  224 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~--~n~l~d~~~~~~~~~~~~~~~l~~-----~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~  224 (244)
                      +.++|-.|.+ |-+++  .++..|||+++.         +..     ....+|+....++ +|.|||   +|.|.+...+
T Consensus         4 l~v~vi~a~~-L~~~~~~~~~~~dpyv~v~---------l~~~~~~~~~~~kT~~~~~~~~~P~w~e---~f~f~~~~~~   70 (128)
T cd00275           4 LTIKIISGQQ-LPKPKGDKGSIVDPYVEVE---------IHGLPADDSAKFKTKVVKNNGFNPVWNE---TFEFDVTVPE   70 (128)
T ss_pred             EEEEEEeeec-CCCCCCCCCCccCCEEEEE---------EEeCCCCCCCcEeeeeecCCCcCCccCC---cEEEEEeCCC
Confidence            4578888874 77787  678899998844         221     2334555322344 888887   6999988555


Q ss_pred             ccceeEEEEeccCcc
Q 043301          225 RSKNMSVEFWDLDDV  239 (244)
Q Consensus       225 ~~~~~~~~~~~~~~~  239 (244)
                      . ..|.++|||+++.
T Consensus        71 ~-~~l~~~V~d~~~~   84 (128)
T cd00275          71 L-AFLRFVVYDEDSG   84 (128)
T ss_pred             e-EEEEEEEEeCCCC
Confidence            3 5799999999986

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=97.84  E-value=8.8e-06  Score=68.39  Aligned_cols=74  Identities=11%  Similarity=0.117  Sum_probs=51.9

Q ss_pred             CcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEE
Q 043301          152 PEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSV  231 (244)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (244)
                      -|.+.|.-+.+ |...|--+-||||+-+         .+.. .+.+|+++-.+.||.|||   .|+|.++.  -..-|-|
T Consensus         7 LL~v~v~~g~~-L~~rD~~~sSDPyVVl---------~lg~-q~lkT~~v~~n~NPeWNe---~ltf~v~d--~~~~lkv   70 (168)
T KOG1030|consen    7 LLRVRVKRGKN-LAIRDFLGSSDPYVVL---------ELGN-QKLKTRVVYKNLNPEWNE---ELTFTVKD--PNTPLKV   70 (168)
T ss_pred             EEEEEEEeecC-eeeeccccCCCCeEEE---------EECC-eeeeeeeecCCCCCcccc---eEEEEecC--CCceEEE
Confidence            34577888864 7777765779999663         3332 345566455577777776   79988764  4566889


Q ss_pred             EEeccCcccc
Q 043301          232 EFWDLDDVLV  241 (244)
Q Consensus       232 ~~~~~~~~~~  241 (244)
                      .|||+|+.|+
T Consensus        71 ~VyD~D~fs~   80 (168)
T KOG1030|consen   71 TVYDKDTFSS   80 (168)
T ss_pred             EEEeCCCCCc
Confidence            9999999886

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=97.83  E-value=6.4e-06  Score=64.03  Aligned_cols=58  Identities=14%  Similarity=0.066  Sum_probs=40.6

Q ss_pred             CCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEEEeccCcc
Q 043301          169 RNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDV  239 (244)
Q Consensus       169 ~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (244)
                      .+|.+|||++++         +......+|++...+.+|.|||   .|.|.+... .++.|.|+|||||..
T Consensus         9 ~~G~~dPYv~v~---------v~~~~~~kT~v~~~t~nP~Wne---~f~f~v~~~-~~~~l~i~v~d~~~~   66 (111)
T cd04052           9 KTGLLSPYAELY---------LNGKLVYTTRVKKKTNNPSWNA---STEFLVTDR-RKSRVTVVVKDDRDR   66 (111)
T ss_pred             cCCCCCceEEEE---------ECCEEEEEEeeeccCCCCccCC---ceEEEecCc-CCCEEEEEEEECCCC
Confidence            678899998744         3322234556444577888888   588877533 567799999999975

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd02340 ZZ_NBR1_like Zinc finger, ZZ type

Probab=97.82  E-value=1.4e-05  Score=52.75  Aligned_cols=39  Identities=31%  Similarity=0.742  Sum_probs=32.5

Q ss_pred             cccccccCCCCCcEEeCCC-CCccccccccCCCcCCCCCCCCcce
Q 043301           34 ICDICETSLQGPAYGCGTC-EFSIHKSCAELPLKIDHPFHCHPLT   77 (244)
Q Consensus        34 ~C~~C~~~i~g~~Y~C~~C-~F~lH~~Ca~~p~~i~hp~H~H~L~   77 (244)
                      .|++|+.+|.|..|+|.+| +|+|+..|....   .|  ..|+|.
T Consensus         2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~~---~H--~~H~f~   41 (43)
T cd02340           2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAKG---VH--PEHAML   41 (43)
T ss_pred             CCCCCCCcCcCCeEECCCCCCccchHHhhCcC---CC--CCCCEE
Confidence            6999999999999999999 799999998754   33  256654

Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.

>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger

Probab=97.60  E-value=7.7e-05  Score=50.55  Aligned_cols=45  Identities=24%  Similarity=0.439  Sum_probs=33.9

Q ss_pred             CcceEeec-CcccccccccCCC---CeeEEcCCccceeccccccCcCcc
Q 043301           74 HPLTLSKT-NHHRCDACLDECS---GMAYRCHECCYNLHYHCTALKPSI  118 (244)
Q Consensus        74 H~L~L~~~-~~~~Cd~Cg~~~~---g~~Y~C~~Cd~~lH~~Ca~~p~~i  118 (244)
                      |.|...+. .++.|++|++.+.   ..+|+|..|++.+|.+|+...+..
T Consensus         1 H~f~~~~~~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~~~~   49 (53)
T PF00130_consen    1 HHFVPTTFSKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKVPPS   49 (53)
T ss_dssp             -EEEEEESSSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTSSSB
T ss_pred             CeEEEccCCCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhcCCC
Confidence            44555554 7899999999873   347999999999999999888654

Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....

>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type

Probab=97.60  E-value=4.5e-05  Score=50.82  Aligned_cols=30  Identities=27%  Similarity=0.861  Sum_probs=27.4

Q ss_pred             cccccc-cCCCCCcEEeCCC-CCccccccccC
Q 043301           34 ICDICE-TSLQGPAYGCGTC-EFSIHKSCAEL   63 (244)
Q Consensus        34 ~C~~C~-~~i~g~~Y~C~~C-~F~lH~~Ca~~   63 (244)
                      .|++|+ .+|.|..|+|.+| +|+|+..|...
T Consensus         2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~   33 (45)
T cd02339           2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYHG   33 (45)
T ss_pred             CCCCCCCCCcccCeEECCCCCCccchHHHhCC
Confidence            699999 6889999999999 79999999873

Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.

>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger

Probab=97.58  E-value=5.8e-05  Score=51.19  Aligned_cols=36  Identities=28%  Similarity=0.643  Sum_probs=29.5

Q ss_pred             cccccccccccCCCC---CcEEeCCCCCccccccccCCC
Q 043301           30 DVVIICDICETSLQG---PAYGCGTCEFSIHKSCAELPL   65 (244)
Q Consensus        30 ~~~~~C~~C~~~i~g---~~Y~C~~C~F~lH~~Ca~~p~   65 (244)
                      ..+.+|+.|++.|+|   .+|+|+.|++.+|++|+....
T Consensus         9 ~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~~   47 (53)
T PF00130_consen    9 SKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKVP   47 (53)
T ss_dssp             SSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTSS
T ss_pred             CCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhcC
Confidence            567899999999965   489999999999999998643

Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....

>cd02249 ZZ Zinc finger, ZZ type

Probab=97.48  E-value=8.7e-05  Score=49.36  Aligned_cols=32  Identities=34%  Similarity=0.708  Sum_probs=29.3

Q ss_pred             cccccccCCCCCcEEeCCCC-CccccccccCCC
Q 043301           34 ICDICETSLQGPAYGCGTCE-FSIHKSCAELPL   65 (244)
Q Consensus        34 ~C~~C~~~i~g~~Y~C~~C~-F~lH~~Ca~~p~   65 (244)
                      .|++|+.+|.|..|+|.+|. |+|+..|...+.
T Consensus         2 ~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~~   34 (46)
T cd02249           2 SCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKGK   34 (46)
T ss_pred             CCcCCCCCCcCCEEECCCCCCCcCHHHHHCcCc
Confidence            69999999999999999995 999999998655

Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=97.47  E-value=5.5e-05  Score=61.14  Aligned_cols=67  Identities=10%  Similarity=0.143  Sum_probs=42.9

Q ss_pred             CcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCcee-EeecCCCCChhhhhhhhhhcCCCCccceeE
Q 043301          152 PEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKV-TISESYPYSDDTLAQFILRLQNSLRSKNMS  230 (244)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (244)
                      .|.+.|.+|+. |-.++   ..|||+.++         +   +++++++ ++..++|.|||   .|.|.+...+.+  |.
T Consensus         3 ~L~V~Vv~Ar~-L~~~~---~~dPYV~Ik---------~---g~~k~kT~v~~~~nP~WnE---~F~F~~~~~~~~--L~   61 (127)
T cd08394           3 LLCVLVKKAKL-DGAPD---KFNTYVTLK---------V---QNVKSTTIAVRGSQPCWEQ---DFMFEINRLDLG--LV   61 (127)
T ss_pred             eEEEEEEEeeC-CCCCC---CCCCeEEEE---------E---CCEEeEeeECCCCCCceee---EEEEEEcCCCCE--EE
Confidence            45688999985 53323   348998754         2   2233332 33455677776   799999654444  99


Q ss_pred             EEEeccCcc
Q 043301          231 VEFWDLDDV  239 (244)
Q Consensus       231 ~~~~~~~~~  239 (244)
                      |||||=|..
T Consensus        62 v~V~dkd~~   70 (127)
T cd08394          62 IELWNKGLI   70 (127)
T ss_pred             EEEEeCCCc
Confidence            999996644

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd02338 ZZ_PCMF_like Zinc finger, ZZ type

Probab=97.46  E-value=9.2e-05  Score=50.09  Aligned_cols=43  Identities=26%  Similarity=0.685  Sum_probs=34.4

Q ss_pred             cccccc-cCCCCCcEEeCCC-CCccccccccCCCcCCCCCC--CCcceE
Q 043301           34 ICDICE-TSLQGPAYGCGTC-EFSIHKSCAELPLKIDHPFH--CHPLTL   78 (244)
Q Consensus        34 ~C~~C~-~~i~g~~Y~C~~C-~F~lH~~Ca~~p~~i~hp~H--~H~L~L   78 (244)
                      .|+.|+ .+|.|.+|+|.+| +|+|+..|.......  ..|  .|++++
T Consensus         2 ~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~~~~~--~~H~~~H~~~~   48 (49)
T cd02338           2 SCDGCGKSNFTGRRYKCLICYDYDLCADCYDSGVTT--ERHLFDHPMQC   48 (49)
T ss_pred             CCCCCcCCCcEEeeEEeCCCCCCccchhHHhCCCcC--CCCCCCCCEEE
Confidence            699999 7899999999999 799999998865432  234  577654

Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.

>cd02340 ZZ_NBR1_like Zinc finger, ZZ type

Probab=97.40  E-value=0.0001  Score=48.56  Aligned_cols=31  Identities=35%  Similarity=0.819  Sum_probs=28.6

Q ss_pred             cccccccCCCCeeEEcCCc-cceeccccccCc
Q 043301           85 RCDACLDECSGMAYRCHEC-CYNLHYHCTALK  115 (244)
Q Consensus        85 ~Cd~Cg~~~~g~~Y~C~~C-d~~lH~~Ca~~p  115 (244)
                      .|+.|++.+.|.+|+|..| +|+++..|....
T Consensus         2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~~   33 (43)
T cd02340           2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAKG   33 (43)
T ss_pred             CCCCCCCcCcCCeEECCCCCCccchHHhhCcC
Confidence            6999999999999999999 899999998754

Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.

>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type

Probab=97.37  E-value=0.00012  Score=49.49  Aligned_cols=32  Identities=28%  Similarity=0.813  Sum_probs=29.0

Q ss_pred             ccccccc-CCCCCcEEeCCCC---CccccccccCCC
Q 043301           34 ICDICET-SLQGPAYGCGTCE---FSIHKSCAELPL   65 (244)
Q Consensus        34 ~C~~C~~-~i~g~~Y~C~~C~---F~lH~~Ca~~p~   65 (244)
                      .|++|+. +|.|.+|+|.+|.   |+|+..|.....
T Consensus         2 ~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~~   37 (48)
T cd02341           2 KCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKGE   37 (48)
T ss_pred             CCCCCCCCccccceEECCCCCCCCCccCHHHHhCcC
Confidence            6999998 8999999999997   999999988654

Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd02334 ZZ_dystrophin Zinc finger, ZZ type

Probab=97.28  E-value=0.00019  Score=48.63  Aligned_cols=42  Identities=29%  Similarity=0.696  Sum_probs=33.0

Q ss_pred             ccccccc-CCCCCcEEeCCC-CCccccccccCCCcCCCCCC--CCcce
Q 043301           34 ICDICET-SLQGPAYGCGTC-EFSIHKSCAELPLKIDHPFH--CHPLT   77 (244)
Q Consensus        34 ~C~~C~~-~i~g~~Y~C~~C-~F~lH~~Ca~~p~~i~hp~H--~H~L~   77 (244)
                      .|+.|+. +|.|..|+|.+| +|+|+..|.......  ..|  .||++
T Consensus         2 ~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~g~~~--~~H~~~Hp~~   47 (49)
T cd02334           2 KCNICKEFPITGFRYRCLKCFNYDLCQSCFFSGRTS--KSHKNSHPMK   47 (49)
T ss_pred             CCCCCCCCCceeeeEECCCCCCcCchHHHHhCCCcC--CCCCCCCCee
Confidence            6999995 799999999999 799999998754433  234  57664

Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=97.28  E-value=0.00017  Score=75.22  Aligned_cols=79  Identities=16%  Similarity=0.172  Sum_probs=66.9

Q ss_pred             cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCcccee
Q 043301          150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNM  229 (244)
Q Consensus       150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (244)
                      .+.+++.+.++- +|+..|.||++||++.         .-|+.++--+|++..+.+||.|||   .|+..+.+.++| -|
T Consensus      1039 sG~l~I~~~~~~-nl~~~d~ng~sDpfv~---------~~ln~k~vyktkv~KktlNPvwNE---e~~i~v~~r~~D-~~ 1104 (1227)
T COG5038        1039 SGYLTIMLRSGE-NLPSSDENGYSDPFVK---------LFLNEKSVYKTKVVKKTLNPVWNE---EFTIEVLNRVKD-VL 1104 (1227)
T ss_pred             cCcEEEEEeccC-CCcccccCCCCCceEE---------EEecceecccccchhccCCCCccc---cceEeeeccccc-eE
Confidence            566789999996 5899999999999977         557777788888777899999999   598888777666 58


Q ss_pred             EEEEeccCccccc
Q 043301          230 SVEFWDLDDVLVN  242 (244)
Q Consensus       230 ~~~~~~~~~~~~~  242 (244)
                      -|-|.|||++.+|
T Consensus      1105 ~i~v~Dwd~~~kn 1117 (1227)
T COG5038        1105 TINVNDWDSGEKN 1117 (1227)
T ss_pred             EEEEeecccCCCc
Confidence            8999999999887

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=97.26  E-value=0.00019  Score=79.35  Aligned_cols=78  Identities=10%  Similarity=0.070  Sum_probs=56.9

Q ss_pred             CcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEE
Q 043301          152 PEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSV  231 (244)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (244)
                      .+.++|..+.+ +.  +--|-+|||+.         .++....+.+||++-.+.||.|||   .|+|.++...++-.|.|
T Consensus      1981 ~L~V~V~~a~n-l~--~~~~~sdPyv~---------l~~g~~~~~kTkvvk~~~nP~Wne---~f~~~~~~p~~~~~l~i 2045 (2102)
T PLN03200       1981 SLTVTIKRGNN-LK--QSMGNTNAFCK---------LTLGNGPPRQTKVVSHSSSPEWKE---GFTWAFDSPPKGQKLHI 2045 (2102)
T ss_pred             ceEEEEeeccc-cc--cccCCCCCeEE---------EEECCCCcccccccCCCCCCCccc---ceeeeecCCCCCCceEE
Confidence            44566777754 43  22355899977         445545577888666688888888   79988888777788999


Q ss_pred             EEeccCcccccCC
Q 043301          232 EFWDLDDVLVNVM  244 (244)
Q Consensus       232 ~~~~~~~~~~~~~  244 (244)
                      ||||.|..+.+-|
T Consensus      2046 ev~d~d~f~kd~~ 2058 (2102)
T PLN03200       2046 SCKSKNTFGKSSL 2058 (2102)
T ss_pred             EEEecCccCCCCC
Confidence            9999998876644

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=97.25  E-value=0.00019  Score=58.46  Aligned_cols=75  Identities=12%  Similarity=0.171  Sum_probs=54.7

Q ss_pred             eeeecccccccc--cCCCC--cchhhHHHHhhhhcccccccc--cCCCCceeEeecCC--CCChhhhhhhhhhcCC----
Q 043301          155 LTFHDVFSSFTE--KDRNQ--LDDITENIESEIAGIKKTLSE--TGDQGSKVTISESY--PYSDDTLAQFILRLQN----  222 (244)
Q Consensus       155 ~~v~~~~~~~~~--~~~n~--l~d~~~~~~~~~~~~~~~l~~--~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~----  222 (244)
                      |.|=++.+ +..  ++.+|  .+|||++         ..|.+  ..+|+|.+--++++  |.+|+   +|+|.+.-    
T Consensus         4 ViIw~~~~-v~~~~~~~~g~~~sD~yVK---------~~L~~~~~~kqkTDVHyrslnG~~~FNw---RfvF~~~~~~~~   70 (133)
T cd08374           4 VIVWNTRD-VLNDDTNITGEKMSDIYVK---------GWLDGLEEDKQKTDVHYRSLDGEGNFNW---RFVFPFDYLPAE   70 (133)
T ss_pred             EEEEECcC-CcccccccCCccccCeEEE---------EEEccCcccccccceEEecCCCCcEEeE---EEEEeeecCCcc
Confidence            55666653 333  33466  4999977         54554  57889987777888  88888   79988665    


Q ss_pred             -----------------C-CccceeEEEEeccCccccc
Q 043301          223 -----------------S-LRSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       223 -----------------~-~~~~~~~~~~~~~~~~~~~  242 (244)
                                       + ....+|.|.|||-|+.|+|
T Consensus        71 ~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~d  108 (133)
T cd08374          71 KKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPD  108 (133)
T ss_pred             ceeEEEeeccccccCcceEecCcEEEEEEEECcccCCC
Confidence                             2 3468999999999999876

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd02342 ZZ_UBA_plant Zinc finger, ZZ type

Probab=97.07  E-value=0.00026  Score=46.55  Aligned_cols=31  Identities=23%  Similarity=0.571  Sum_probs=27.8

Q ss_pred             ccccccc-CCCCCcEEeCCC-CCccccccccCC
Q 043301           34 ICDICET-SLQGPAYGCGTC-EFSIHKSCAELP   64 (244)
Q Consensus        34 ~C~~C~~-~i~g~~Y~C~~C-~F~lH~~Ca~~p   64 (244)
                      .||+|+. +|.|..|+|..| +|+|++.|....
T Consensus         2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~~   34 (43)
T cd02342           2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFSRM   34 (43)
T ss_pred             CCCCCCCCcccccceEeCCCCCCccHHHHhhhh
Confidence            6999996 899999999999 799999998754

Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.

>cd02343 ZZ_EF Zinc finger, ZZ type

Probab=97.07  E-value=0.00037  Score=47.04  Aligned_cols=44  Identities=23%  Similarity=0.426  Sum_probs=33.4

Q ss_pred             cccccccCCCCCcEEeCCC-CCccccccccCCCcCCCCCCCCcce
Q 043301           34 ICDICETSLQGPAYGCGTC-EFSIHKSCAELPLKIDHPFHCHPLT   77 (244)
Q Consensus        34 ~C~~C~~~i~g~~Y~C~~C-~F~lH~~Ca~~p~~i~hp~H~H~L~   77 (244)
                      .|++|...+.|+.|+|.+| +|+|+..|.........-...||+.
T Consensus         2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~g~~~~~H~~~Hpm~   46 (48)
T cd02343           2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCFLGGVKPEGHEDDHEMV   46 (48)
T ss_pred             CCCCCCCcCCCceEECCCCCCchhHHHHHhCCccCCCCCCCCCcc
Confidence            5999998888999999999 7999999988655443222246653

Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.05  E-value=0.00028  Score=67.43  Aligned_cols=45  Identities=27%  Similarity=0.589  Sum_probs=36.5

Q ss_pred             CCCEeeeeccCCCcccccccccccCCCCC---cEEeCCCCCccccccccCCCc
Q 043301           17 HYLIFNENEVGHDDVVIICDICETSLQGP---AYGCGTCEFSIHKSCAELPLK   66 (244)
Q Consensus        17 H~L~L~~~~~~~~~~~~~C~~C~~~i~g~---~Y~C~~C~F~lH~~Ca~~p~~   66 (244)
                      |.++++     .+..+++||+||.-+.|.   +.+|+.|+..+|.+|.+..+.
T Consensus       111 Hkf~~~-----tYssPTFCDhCGsLLyGl~HQGmKC~~C~mNVH~rCv~nVPs  158 (683)
T KOG0696|consen  111 HKFKIH-----TYSSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHHRCVENVPS  158 (683)
T ss_pred             cceeee-----ecCCCchhhhHHHHHHHHHhcccccccccchHHHHHhhcCCc
Confidence            666652     257799999999998874   899999999999999986543

>cd02344 ZZ_HERC2 Zinc finger, ZZ type

Probab=97.05  E-value=0.00047  Score=45.93  Aligned_cols=30  Identities=30%  Similarity=0.986  Sum_probs=27.2

Q ss_pred             ccccccc-CCCCCcEEeCCC-CCccccccccC
Q 043301           34 ICDICET-SLQGPAYGCGTC-EFSIHKSCAEL   63 (244)
Q Consensus        34 ~C~~C~~-~i~g~~Y~C~~C-~F~lH~~Ca~~   63 (244)
                      .||+|+. +|.|..|+|.+| +|+|++.|...
T Consensus         2 ~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~   33 (45)
T cd02344           2 TCDGCQMFPINGPRFKCRNCDDFDFCENCFKT   33 (45)
T ss_pred             CCCCCCCCCCccCeEECCCCCCccchHHhhCC
Confidence            6999985 899999999999 69999999875

Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd00029 C1 Protein kinase C conserved region 1 (C1)

Probab=97.04  E-value=0.00043  Score=45.84  Aligned_cols=43  Identities=26%  Similarity=0.511  Sum_probs=34.4

Q ss_pred             CcceEeec-CcccccccccCCCC---eeEEcCCccceeccccccCcC
Q 043301           74 HPLTLSKT-NHHRCDACLDECSG---MAYRCHECCYNLHYHCTALKP  116 (244)
Q Consensus        74 H~L~L~~~-~~~~Cd~Cg~~~~g---~~Y~C~~Cd~~lH~~Ca~~p~  116 (244)
                      |.|..... .+.+|++|++.+.|   .+|+|..|++.+|.+|+...+
T Consensus         1 H~f~~~~~~~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v~   47 (50)
T cd00029           1 HRFVRKSFFKPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKVP   47 (50)
T ss_pred             CccEEeeCCCCCChhhcchhhhccccceeEcCCCCCchhhhhhccCC
Confidence            34444443 57899999998876   679999999999999998763

Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).

>cd02335 ZZ_ADA2 Zinc finger, ZZ type

Probab=97.03  E-value=0.00069  Score=45.69  Aligned_cols=43  Identities=23%  Similarity=0.549  Sum_probs=33.6

Q ss_pred             cccccccCCC-CCcEEeCCC-CCccccccccCCCcCCCCCC--CCcceE
Q 043301           34 ICDICETSLQ-GPAYGCGTC-EFSIHKSCAELPLKIDHPFH--CHPLTL   78 (244)
Q Consensus        34 ~C~~C~~~i~-g~~Y~C~~C-~F~lH~~Ca~~p~~i~hp~H--~H~L~L   78 (244)
                      .|++|...+. |..|+|.+| +|+|+..|.......  ..|  .|++.+
T Consensus         2 ~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~g~~~--~~H~~~H~~~~   48 (49)
T cd02335           2 HCDYCSKDITGTIRIKCAECPDFDLCLECFSAGAEI--GKHRNDHNYRV   48 (49)
T ss_pred             CCCCcCCCCCCCcEEECCCCCCcchhHHhhhCcCCC--CCCCCCCCeEe
Confidence            5999999875 599999999 899999999866443  234  577654

Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd02345 ZZ_dah Zinc finger, ZZ type

Probab=97.01  E-value=0.00044  Score=46.75  Aligned_cols=32  Identities=22%  Similarity=0.697  Sum_probs=28.8

Q ss_pred             ccccccc-CCCCCcEEeCCC-CCccccccccCCC
Q 043301           34 ICDICET-SLQGPAYGCGTC-EFSIHKSCAELPL   65 (244)
Q Consensus        34 ~C~~C~~-~i~g~~Y~C~~C-~F~lH~~Ca~~p~   65 (244)
                      .|++|.. +|.|..|+|.+| +|+|+..|.....
T Consensus         2 ~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~~~   35 (49)
T cd02345           2 SCSACRKQDISGIRFPCQVCRDYSLCLGCYTKGR   35 (49)
T ss_pred             cCCCCCCCCceEeeEECCCCCCcCchHHHHhCCC
Confidence            5999998 899999999999 7999999987553

Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.

>cd00029 C1 Protein kinase C conserved region 1 (C1)

Probab=96.97  E-value=0.00064  Score=44.97  Aligned_cols=35  Identities=31%  Similarity=0.706  Sum_probs=30.9

Q ss_pred             cccccccccccCCCC---CcEEeCCCCCccccccccCC
Q 043301           30 DVVIICDICETSLQG---PAYGCGTCEFSIHKSCAELP   64 (244)
Q Consensus        30 ~~~~~C~~C~~~i~g---~~Y~C~~C~F~lH~~Ca~~p   64 (244)
                      ..+.+|+.|+..|+|   .+|+|..|++.+|++|+...
T Consensus         9 ~~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v   46 (50)
T cd00029           9 FKPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKV   46 (50)
T ss_pred             CCCCChhhcchhhhccccceeEcCCCCCchhhhhhccC
Confidence            357899999999987   68999999999999999754

Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).

>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type

Probab=96.96  E-value=0.00053  Score=45.63  Aligned_cols=31  Identities=32%  Similarity=0.808  Sum_probs=27.6

Q ss_pred             ccccccc-CCCCeeEEcCCc-cceeccccccCc
Q 043301           85 RCDACLD-ECSGMAYRCHEC-CYNLHYHCTALK  115 (244)
Q Consensus        85 ~Cd~Cg~-~~~g~~Y~C~~C-d~~lH~~Ca~~p  115 (244)
                      .||.|++ .+.|.+|+|..| ||+++..|....
T Consensus         2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~~   34 (45)
T cd02339           2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYHGD   34 (45)
T ss_pred             CCCCCCCCCcccCeEECCCCCCccchHHHhCCC
Confidence            6999995 688999999999 899999999843

Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.

>cd02343 ZZ_EF Zinc finger, ZZ type

Probab=96.94  E-value=0.00047  Score=46.52  Aligned_cols=31  Identities=29%  Similarity=0.602  Sum_probs=28.5

Q ss_pred             cccccccCCCCeeEEcCCc-cceeccccccCc
Q 043301           85 RCDACLDECSGMAYRCHEC-CYNLHYHCTALK  115 (244)
Q Consensus        85 ~Cd~Cg~~~~g~~Y~C~~C-d~~lH~~Ca~~p  115 (244)
                      .||.|+..+.|++|+|..| ||+++..|...-
T Consensus         2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~g   33 (48)
T cd02343           2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCFLGG   33 (48)
T ss_pred             CCCCCCCcCCCceEECCCCCCchhHHHHHhCC
Confidence            5999999888999999999 899999999765

Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>PLN03008 Phospholipase D delta

Probab=96.93  E-value=0.00041  Score=71.00  Aligned_cols=58  Identities=12%  Similarity=0.083  Sum_probs=39.9

Q ss_pred             CcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEEEeccCccccc
Q 043301          171 QLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       171 ~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (244)
                      +-||||++         ..|......+|++.-.+.||.|||   +|.|.+..  ...-|.++|||||+.+.-
T Consensus        75 ~tSDPYV~---------I~Lg~~rv~RTrVi~n~~NPvWNE---~F~f~vah--~~s~L~f~VkD~D~~gaD  132 (868)
T PLN03008         75 ITSDPYVT---------VVVPQATLARTRVLKNSQEPLWDE---KFNISIAH--PFAYLEFQVKDDDVFGAQ  132 (868)
T ss_pred             CCCCceEE---------EEECCcceeeEEeCCCCCCCCcce---eEEEEecC--CCceEEEEEEcCCccCCc
Confidence            35788877         445333333566333466777777   79998775  456899999999998753

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=96.92  E-value=0.00022  Score=69.84  Aligned_cols=48  Identities=25%  Similarity=0.497  Sum_probs=41.6

Q ss_pred             CCCCcceEeec-CcccccccccCCCCe---eEEcCCccceeccccccCcCcc
Q 043301           71 FHCHPLTLSKT-NHHRCDACLDECSGM---AYRCHECCYNLHYHCTALKPSI  118 (244)
Q Consensus        71 ~H~H~L~L~~~-~~~~Cd~Cg~~~~g~---~Y~C~~Cd~~lH~~Ca~~p~~i  118 (244)
                      .++|.|..++| .+++||.||+.+.|+   +.+|..|+.+.|++|+...|.-
T Consensus       143 i~PH~l~vhSY~~PtFCD~CGEmL~GLvrQGlKC~gCglNyHKRCa~kipNN  194 (888)
T KOG4236|consen  143 IRPHTLFVHSYKAPTFCDFCGEMLFGLVRQGLKCEGCGLNYHKRCAFKIPNN  194 (888)
T ss_pred             eecceeeeecccCchHHHHHHHHHHHHHHccccccCCCCcHhhhhhhcCCCC
Confidence            46888988888 999999999987775   6999999999999999776654

>cd02249 ZZ Zinc finger, ZZ type

Probab=96.87  E-value=0.00074  Score=44.85  Aligned_cols=32  Identities=34%  Similarity=0.796  Sum_probs=29.3

Q ss_pred             ccccccccCCCCeeEEcCCc-cceeccccccCc
Q 043301           84 HRCDACLDECSGMAYRCHEC-CYNLHYHCTALK  115 (244)
Q Consensus        84 ~~Cd~Cg~~~~g~~Y~C~~C-d~~lH~~Ca~~p  115 (244)
                      ..|+.|++.+.|.+|+|..| +|+++..|....
T Consensus         1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~   33 (46)
T cd02249           1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKG   33 (46)
T ss_pred             CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCcC
Confidence            36999999999999999999 699999999866

Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.

>cd02345 ZZ_dah Zinc finger, ZZ type

Probab=96.81  E-value=0.00088  Score=45.29  Aligned_cols=31  Identities=32%  Similarity=0.823  Sum_probs=28.5

Q ss_pred             ccccccc-CCCCeeEEcCCc-cceeccccccCc
Q 043301           85 RCDACLD-ECSGMAYRCHEC-CYNLHYHCTALK  115 (244)
Q Consensus        85 ~Cd~Cg~-~~~g~~Y~C~~C-d~~lH~~Ca~~p  115 (244)
                      .|+.|++ .+.|.+|+|..| ||+++..|....
T Consensus         2 ~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~~   34 (49)
T cd02345           2 SCSACRKQDISGIRFPCQVCRDYSLCLGCYTKG   34 (49)
T ss_pred             cCCCCCCCCceEeeEECCCCCCcCchHHHHhCC
Confidence            5999999 899999999999 899999999855

Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.

>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains)

Probab=96.76  E-value=0.00048  Score=45.15  Aligned_cols=35  Identities=31%  Similarity=0.663  Sum_probs=30.7

Q ss_pred             cccccccccccCCCCC--cEEeCCCCCccccccccCC
Q 043301           30 DVVIICDICETSLQGP--AYGCGTCEFSIHKSCAELP   64 (244)
Q Consensus        30 ~~~~~C~~C~~~i~g~--~Y~C~~C~F~lH~~Ca~~p   64 (244)
                      ..+.+|+.|+..|++.  +|+|..|++.+|++|+...
T Consensus         9 ~~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~v   45 (49)
T smart00109        9 KKPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEKV   45 (49)
T ss_pred             CCCCCccccccccCcCCCCcCCCCCCchHHHHHHhhc
Confidence            4578999999999873  8999999999999998753

Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.

>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains)

Probab=96.73  E-value=0.00058  Score=44.77  Aligned_cols=35  Identities=26%  Similarity=0.580  Sum_probs=30.7

Q ss_pred             CcccccccccCCCCe--eEEcCCccceeccccccCcC
Q 043301           82 NHHRCDACLDECSGM--AYRCHECCYNLHYHCTALKP  116 (244)
Q Consensus        82 ~~~~Cd~Cg~~~~g~--~Y~C~~Cd~~lH~~Ca~~p~  116 (244)
                      .+.+|++|++.+.+.  +|+|..|++.+|.+|+...+
T Consensus        10 ~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~v~   46 (49)
T smart00109       10 KPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEKVP   46 (49)
T ss_pred             CCCCccccccccCcCCCCcCCCCCCchHHHHHHhhcC
Confidence            678999999987764  79999999999999998763

Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.

>cd02338 ZZ_PCMF_like Zinc finger, ZZ type

Probab=96.69  E-value=0.0012  Score=44.59  Aligned_cols=31  Identities=32%  Similarity=0.782  Sum_probs=28.1

Q ss_pred             cccccc-cCCCCeeEEcCCc-cceeccccccCc
Q 043301           85 RCDACL-DECSGMAYRCHEC-CYNLHYHCTALK  115 (244)
Q Consensus        85 ~Cd~Cg-~~~~g~~Y~C~~C-d~~lH~~Ca~~p  115 (244)
                      .|+.|+ ..+.|.+|+|..| ||++...|....
T Consensus         2 ~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~~   34 (49)
T cd02338           2 SCDGCGKSNFTGRRYKCLICYDYDLCADCYDSG   34 (49)
T ss_pred             CCCCCcCCCcEEeeEEeCCCCCCccchhHHhCC
Confidence            699999 5788999999999 899999999866

Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.

>cd02334 ZZ_dystrophin Zinc finger, ZZ type

Probab=96.61  E-value=0.0014  Score=44.36  Aligned_cols=31  Identities=32%  Similarity=0.890  Sum_probs=28.0

Q ss_pred             ccccccc-CCCCeeEEcCCc-cceeccccccCc
Q 043301           85 RCDACLD-ECSGMAYRCHEC-CYNLHYHCTALK  115 (244)
Q Consensus        85 ~Cd~Cg~-~~~g~~Y~C~~C-d~~lH~~Ca~~p  115 (244)
                      .|+.|+. .+.|.+|+|..| ||+|+..|...-
T Consensus         2 ~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~g   34 (49)
T cd02334           2 KCNICKEFPITGFRYRCLKCFNYDLCQSCFFSG   34 (49)
T ss_pred             CCCCCCCCCceeeeEECCCCCCcCchHHHHhCC
Confidence            6999997 589999999999 899999999755

Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.

>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein

Probab=96.59  E-value=0.0012  Score=43.54  Aligned_cols=33  Identities=27%  Similarity=0.735  Sum_probs=29.4

Q ss_pred             cccccccccCCCCCcEEeCCC-CCccccccccCC
Q 043301           32 VIICDICETSLQGPAYGCGTC-EFSIHKSCAELP   64 (244)
Q Consensus        32 ~~~C~~C~~~i~g~~Y~C~~C-~F~lH~~Ca~~p   64 (244)
                      ...|+.|+.+|.|..|+|..| +|+|+..|....
T Consensus         4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~~   37 (44)
T smart00291        4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAKG   37 (44)
T ss_pred             CcCCCCCCCCCcCCEEECCCCCCccchHHHHhCc
Confidence            467999999999999999999 799999998643

Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].

>cd02337 ZZ_CBP Zinc finger, ZZ type

Probab=96.58  E-value=0.0013  Score=42.89  Aligned_cols=37  Identities=19%  Similarity=0.614  Sum_probs=29.9

Q ss_pred             cccccccCCCCCcEEeCCC-CCccccccccCCCcCCCCCCCCcce
Q 043301           34 ICDICETSLQGPAYGCGTC-EFSIHKSCAELPLKIDHPFHCHPLT   77 (244)
Q Consensus        34 ~C~~C~~~i~g~~Y~C~~C-~F~lH~~Ca~~p~~i~hp~H~H~L~   77 (244)
                      .|+.|.. +.|.+|+|+.| +|+++..|...      +.|+|.|+
T Consensus         2 ~C~~C~~-~~~~r~~C~~C~dfDLC~~C~~~------~~H~H~~~   39 (41)
T cd02337           2 TCNECKH-HVETRWHCTVCEDYDLCITCYNT------KNHPHKME   39 (41)
T ss_pred             cCCCCCC-cCCCceECCCCcchhhHHHHhCC------CCCCcccc
Confidence            5999977 55799999999 79999999864      44677654

Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=96.57  E-value=0.0022  Score=46.38  Aligned_cols=42  Identities=17%  Similarity=0.258  Sum_probs=31.3

Q ss_pred             CCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEEEeccCccc
Q 043301          195 DQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVL  240 (244)
Q Consensus       195 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (244)
                      ..+|+..-.+.+|.|||   .|.|.+...+ ...|.|+|||.+...
T Consensus        36 ~~~T~~~~~~~~P~w~e---~~~~~~~~~~-~~~l~i~v~~~~~~~   77 (101)
T smart00239       36 KKKTKVVKNTLNPVWNE---TFEFEVPPPE-LAELEIEVYDKDRFG   77 (101)
T ss_pred             eEeeeEecCCCCCcccc---eEEEEecCcc-cCEEEEEEEecCCcc
Confidence            35555333355888887   6999887777 899999999998653

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=96.52  E-value=0.0017  Score=65.41  Aligned_cols=95  Identities=21%  Similarity=0.114  Sum_probs=69.9

Q ss_pred             CCcEEEEEeccCC--cceeeecccccccccCCCCcchhhHHHHhhhhccccccccc-CCCCceeEeecCCCCChhhhhhh
Q 043301          140 QDVELRTIQERNP--EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET-GDQGSKVTISESYPYSDDTLAQF  216 (244)
Q Consensus       140 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~  216 (244)
                      |.+.+++.-..|.  +-+.|--|.. ++|.|+||||||.+-++    -+++-+=|- ..|+|++.-+++||+.+|   +|
T Consensus       934 g~lsvr~~y~~n~q~L~veVlhA~d-iipLD~NGlSDPFVviE----l~P~~~fp~v~~q~T~V~~rtLnPVfDE---~F 1005 (1103)
T KOG1328|consen  934 GVLSVRAYYNGNAQTLVVEVLHAKD-IIPLDSNGLSDPFVVIE----LIPKFRFPAVPVQKTKVVSRTLNPVFDE---TF 1005 (1103)
T ss_pred             CceEEEEEeeccccchhhhhhcccc-ccccCCCCCCCCeEEEE----eccccccccchhhhhhhhhccccchhhh---he
Confidence            5667777665554  6678888874 89999999999986633    112222222 789999888899999999   69


Q ss_pred             hhhcCCCCccce---eEEEEeccCccccc
Q 043301          217 ILRLQNSLRSKN---MSVEFWDLDDVLVN  242 (244)
Q Consensus       217 ~~~~~~~~~~~~---~~~~~~~~~~~~~~  242 (244)
                      -|.+-++--.+|   +...|-|-|-.+.|
T Consensus      1006 eFsVp~e~c~te~Am~~FTVMDHD~L~sN 1034 (1103)
T KOG1328|consen 1006 EFSVPPEPCSTETAMLHFTVMDHDYLRSN 1034 (1103)
T ss_pred             eeecCccccccccceEEEEeeccceeccc
Confidence            999998876655   67788887776666

>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.51  E-value=0.00073  Score=44.99  Aligned_cols=32  Identities=28%  Similarity=0.725  Sum_probs=25.8

Q ss_pred             ccccccccc-CCCCCcEEeCCC-CCccccccccC
Q 043301           32 VIICDICET-SLQGPAYGCGTC-EFSIHKSCAEL   63 (244)
Q Consensus        32 ~~~C~~C~~-~i~g~~Y~C~~C-~F~lH~~Ca~~   63 (244)
                      ...|++|+. +|.|..|+|.+| +|+|+..|...
T Consensus         4 ~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~   37 (46)
T PF00569_consen    4 GYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSK   37 (46)
T ss_dssp             SCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH
T ss_pred             CeECcCCCCCcCcCCeEECCCCCCCchhhHHHhC
Confidence            468999998 889999999999 69999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.

>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.49  E-value=0.00081  Score=44.77  Aligned_cols=32  Identities=31%  Similarity=0.701  Sum_probs=25.9

Q ss_pred             ccccccccc-CCCCeeEEcCCc-cceeccccccC
Q 043301           83 HHRCDACLD-ECSGMAYRCHEC-CYNLHYHCTAL  114 (244)
Q Consensus        83 ~~~Cd~Cg~-~~~g~~Y~C~~C-d~~lH~~Ca~~  114 (244)
                      ...|+.|+. .+.|.+|+|..| ||+|+..|...
T Consensus         4 ~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~   37 (46)
T PF00569_consen    4 GYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSK   37 (46)
T ss_dssp             SCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH
T ss_pred             CeECcCCCCCcCcCCeEECCCCCCCchhhHHHhC
Confidence            568999999 688999999999 79999999874

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.

>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type

Probab=96.46  E-value=0.0019  Score=43.55  Aligned_cols=32  Identities=31%  Similarity=0.792  Sum_probs=28.8

Q ss_pred             cccccccc-CCCCeeEEcCCcc---ceeccccccCc
Q 043301           84 HRCDACLD-ECSGMAYRCHECC---YNLHYHCTALK  115 (244)
Q Consensus        84 ~~Cd~Cg~-~~~g~~Y~C~~Cd---~~lH~~Ca~~p  115 (244)
                      +.|+.|++ .+.|.+|+|..|.   |++...|....
T Consensus         1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~   36 (48)
T cd02341           1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKG   36 (48)
T ss_pred             CCCCCCCCCccccceEECCCCCCCCCccCHHHHhCc
Confidence            36999999 7999999999997   99999999866

Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd02344 ZZ_HERC2 Zinc finger, ZZ type

Probab=96.43  E-value=0.0023  Score=42.63  Aligned_cols=31  Identities=23%  Similarity=0.776  Sum_probs=27.9

Q ss_pred             ccccccc-CCCCeeEEcCCc-cceeccccccCc
Q 043301           85 RCDACLD-ECSGMAYRCHEC-CYNLHYHCTALK  115 (244)
Q Consensus        85 ~Cd~Cg~-~~~g~~Y~C~~C-d~~lH~~Ca~~p  115 (244)
                      .||.|+. .+.|.+|+|..| ||+++..|....
T Consensus         2 ~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~~   34 (45)
T cd02344           2 TCDGCQMFPINGPRFKCRNCDDFDFCENCFKTR   34 (45)
T ss_pred             CCCCCCCCCCccCeEECCCCCCccchHHhhCCC
Confidence            6999997 689999999999 799999999764

Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]

Probab=96.42  E-value=0.0015  Score=59.32  Aligned_cols=41  Identities=24%  Similarity=0.730  Sum_probs=33.9

Q ss_pred             cccccccc-CCCCCcEEeCCC-CCccccccccCCCcCCCCCC-CCcceE
Q 043301           33 IICDICET-SLQGPAYGCGTC-EFSIHKSCAELPLKIDHPFH-CHPLTL   78 (244)
Q Consensus        33 ~~C~~C~~-~i~g~~Y~C~~C-~F~lH~~Ca~~p~~i~hp~H-~H~L~L   78 (244)
                      ..||.|+. +|.|..|+|.+| +|+|+++|-...     +.| +|.|.-
T Consensus       153 v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~-----~~h~~H~~lR  196 (278)
T KOG4582|consen  153 VPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGN-----EHHAAHAMLR  196 (278)
T ss_pred             ccCCCccCCccccceeeecCCCccchhHHhhcCC-----CCCcccceee
Confidence            68999999 899999999999 799999997643     345 676543

>cd00030 C2 C2 domain

Probab=96.20  E-value=0.0044  Score=44.26  Aligned_cols=33  Identities=24%  Similarity=0.475  Sum_probs=26.5

Q ss_pred             cCCCCChhhhhhhhhhcCCCCccceeEEEEeccCccc
Q 043301          204 ESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVL  240 (244)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (244)
                      +.+|.|++   .|.|.+... ..++|.|+|||++...
T Consensus        42 ~~~P~w~~---~~~~~~~~~-~~~~l~i~v~~~~~~~   74 (102)
T cd00030          42 TLNPVWNE---TFEFPVLDP-ESDTLTVEVWDKDRFS   74 (102)
T ss_pred             CCCCcccc---eEEEEccCC-CCCEEEEEEEecCCCC
Confidence            46788887   588887775 6788999999998764

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>cd02342 ZZ_UBA_plant Zinc finger, ZZ type

Probab=96.16  E-value=0.0022  Score=42.19  Aligned_cols=31  Identities=26%  Similarity=0.480  Sum_probs=28.0

Q ss_pred             ccccccc-CCCCeeEEcCCc-cceeccccccCc
Q 043301           85 RCDACLD-ECSGMAYRCHEC-CYNLHYHCTALK  115 (244)
Q Consensus        85 ~Cd~Cg~-~~~g~~Y~C~~C-d~~lH~~Ca~~p  115 (244)
                      .||.||. .+.|.+|+|..| ||+++..|....
T Consensus         2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~~   34 (43)
T cd02342           2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFSRM   34 (43)
T ss_pred             CCCCCCCCcccccceEeCCCCCCccHHHHhhhh
Confidence            5999998 589999999999 899999998765

Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.

>cd02335 ZZ_ADA2 Zinc finger, ZZ type

Probab=96.10  E-value=0.0051  Score=41.43  Aligned_cols=31  Identities=26%  Similarity=0.769  Sum_probs=27.6

Q ss_pred             cccccccCCC-CeeEEcCCc-cceeccccccCc
Q 043301           85 RCDACLDECS-GMAYRCHEC-CYNLHYHCTALK  115 (244)
Q Consensus        85 ~Cd~Cg~~~~-g~~Y~C~~C-d~~lH~~Ca~~p  115 (244)
                      .|+.|++.+. |.+|+|..| ||++...|....
T Consensus         2 ~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~g   34 (49)
T cd02335           2 HCDYCSKDITGTIRIKCAECPDFDLCLECFSAG   34 (49)
T ss_pred             CCCCcCCCCCCCcEEECCCCCCcchhHHhhhCc
Confidence            5999999765 589999999 999999999866

Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=96.10  E-value=0.0013  Score=66.03  Aligned_cols=79  Identities=16%  Similarity=0.302  Sum_probs=51.8

Q ss_pred             cceeeecccccccccCCCCcchhhHHHH-------------------------hhhhcccccccccCCCCceeEeecCCC
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIE-------------------------SEIAGIKKTLSETGDQGSKVTISESYP  207 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~-------------------------~~~~~~~~~l~~~~~~~~~~~i~~~~~  207 (244)
                      +.+++-++.+ |+..|+||+|||+....                         |.+.+++++|+-.    |-.--+.+||
T Consensus       116 l~is~~~ak~-l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIka----tsvk~~TLnP  190 (1103)
T KOG1328|consen  116 LNISLLEAKD-LIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKA----TSVKKKTLNP  190 (1103)
T ss_pred             HHHHHHHhcC-ccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhh----cccccccCCc
Confidence            4488899984 89999999999954322                         1123344444422    2212235677


Q ss_pred             CChhhhhhhhhhcCCCCccceeEEEEeccCccc
Q 043301          208 YSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVL  240 (244)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (244)
                      .|+|   .|.|.+..-..| -+.+.+||-|+.+
T Consensus       191 kW~E---kF~F~IeDv~tD-qfHlDIWDHDDe~  219 (1103)
T KOG1328|consen  191 KWSE---KFQFTIEDVQTD-QFHLDIWDHDDEE  219 (1103)
T ss_pred             chhh---heeeehhccccc-eeeeecccCCccH
Confidence            7777   688887544333 5899999999865

>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein

Probab=96.08  E-value=0.0032  Score=41.45  Aligned_cols=33  Identities=33%  Similarity=0.712  Sum_probs=29.8

Q ss_pred             cccccccccCCCCeeEEcCCc-cceeccccccCc
Q 043301           83 HHRCDACLDECSGMAYRCHEC-CYNLHYHCTALK  115 (244)
Q Consensus        83 ~~~Cd~Cg~~~~g~~Y~C~~C-d~~lH~~Ca~~p  115 (244)
                      ...|+.|+..+.|.+|+|..| ||++...|....
T Consensus         4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~~   37 (44)
T smart00291        4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAKG   37 (44)
T ss_pred             CcCCCCCCCCCcCCEEECCCCCCccchHHHHhCc
Confidence            467999999999999999999 899999998754

Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].

>cd02337 ZZ_CBP Zinc finger, ZZ type

Probab=95.50  E-value=0.0074  Score=39.34  Aligned_cols=31  Identities=26%  Similarity=0.667  Sum_probs=26.7

Q ss_pred             ccccccccCCCCeeEEcCCc-cceeccccccCc
Q 043301           84 HRCDACLDECSGMAYRCHEC-CYNLHYHCTALK  115 (244)
Q Consensus        84 ~~Cd~Cg~~~~g~~Y~C~~C-d~~lH~~Ca~~p  115 (244)
                      +.|+.|+. ..|.+|+|..| ||++...|...+
T Consensus         1 y~C~~C~~-~~~~r~~C~~C~dfDLC~~C~~~~   32 (41)
T cd02337           1 YTCNECKH-HVETRWHCTVCEDYDLCITCYNTK   32 (41)
T ss_pred             CcCCCCCC-cCCCceECCCCcchhhHHHHhCCC
Confidence            36999988 45799999999 899999999766

Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.

>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]

Probab=95.31  E-value=0.014  Score=54.26  Aligned_cols=49  Identities=22%  Similarity=0.386  Sum_probs=36.4

Q ss_pred             cccccccccccCC-CCCcEEeCCC-CCccccccccCCCcCCCCCCCCcceE
Q 043301           30 DVVIICDICETSL-QGPAYGCGTC-EFSIHKSCAELPLKIDHPFHCHPLTL   78 (244)
Q Consensus        30 ~~~~~C~~C~~~i-~g~~Y~C~~C-~F~lH~~Ca~~p~~i~hp~H~H~L~L   78 (244)
                      .+...|++|+..- .|..|+|-.| +|+++..|.+....+.-..+.||+..
T Consensus         6 He~v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCyen~~tt~~H~~dHPmqc   56 (381)
T KOG1280|consen    6 HEGVSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYENGATTPIHDEDHPMQC   56 (381)
T ss_pred             cCCceeccccccceeeeeeEeeeecchhHHHHHhhcCCCCcccCCCCceeE
Confidence            4568999999876 5679999999 79999999987544322233666544

>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]

Probab=94.80  E-value=0.016  Score=53.92  Aligned_cols=35  Identities=26%  Similarity=0.637  Sum_probs=30.1

Q ss_pred             CcccccccccC-CCCeeEEcCCc-cceeccccccCcC
Q 043301           82 NHHRCDACLDE-CSGMAYRCHEC-CYNLHYHCTALKP  116 (244)
Q Consensus        82 ~~~~Cd~Cg~~-~~g~~Y~C~~C-d~~lH~~Ca~~p~  116 (244)
                      ....||+||+. +.|.+|||..| ||+++..|...-.
T Consensus         7 e~v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCyen~~   43 (381)
T KOG1280|consen    7 EGVSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYENGA   43 (381)
T ss_pred             CCceeccccccceeeeeeEeeeecchhHHHHHhhcCC
Confidence            35689999996 67889999999 9999999987663

>PLN02952 phosphoinositide phospholipase C

Probab=94.60  E-value=0.014  Score=58.35  Aligned_cols=59  Identities=19%  Similarity=0.286  Sum_probs=40.4

Q ss_pred             hhhHHHHhhhhcccccccccCCCCceeEee-cCCCCChhhhhhhhhhcCCCCccceeEEEEeccCccccc
Q 043301          174 DITENIESEIAGIKKTLSETGDQGSKVTIS-ESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       174 d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (244)
                      |||+++  ++.+++..   ..+++|+ +|. +.+|.|||   +|.|.+...+. --|.|+|||+|..+.|
T Consensus       498 D~yV~V--~i~G~p~D---~~~~kTk-vi~nN~nPvWnE---~F~F~i~~PEL-Allrf~V~D~D~~~~d  557 (599)
T PLN02952        498 DFYTKM--YIVGVPAD---NAKKKTK-IIEDNWYPAWNE---EFSFPLTVPEL-ALLRIEVREYDMSEKD  557 (599)
T ss_pred             CceEEE--EEeccCCC---Ccceeee-eccCCCCcccCC---eeEEEEEcCCc-cEEEEEEEecCCCCCC
Confidence            778765  34444432   2456777 455 47788887   69998886554 3678899999998765

>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]

Probab=94.45  E-value=0.019  Score=52.30  Aligned_cols=32  Identities=34%  Similarity=0.749  Sum_probs=29.6

Q ss_pred             cccccccc-CCCCeeEEcCCc-cceeccccccCc
Q 043301           84 HRCDACLD-ECSGMAYRCHEC-CYNLHYHCTALK  115 (244)
Q Consensus        84 ~~Cd~Cg~-~~~g~~Y~C~~C-d~~lH~~Ca~~p  115 (244)
                      ..||.|+. .+.|.+|+|..| ||+|+.+|....
T Consensus       153 v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~  186 (278)
T KOG4582|consen  153 VPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGN  186 (278)
T ss_pred             ccCCCccCCccccceeeecCCCccchhHHhhcCC
Confidence            68999999 899999999999 999999998753

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=93.02  E-value=0.042  Score=45.34  Aligned_cols=66  Identities=11%  Similarity=0.070  Sum_probs=43.8

Q ss_pred             CCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeE
Q 043301          151 NPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMS  230 (244)
Q Consensus       151 ~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (244)
                      +-+.+.|-||.. |-+++     |||++         ..|+.+.--.|++.-.+.+|.|+|   .|.|...+.  -..|.
T Consensus        11 ~sL~v~V~EAk~-Lp~~~-----~~Y~~---------i~Ld~~~vaRT~v~~~~~nP~W~E---~F~f~~~~~--~~~l~   70 (146)
T cd04013          11 NSLKLWIIEAKG-LPPKK-----RYYCE---------LCLDKTLYARTTSKLKTDTLFWGE---HFEFSNLPP--VSVIT   70 (146)
T ss_pred             EEEEEEEEEccC-CCCcC-----CceEE---------EEECCEEEEEEEEEcCCCCCccee---eEEecCCCc--ccEEE
Confidence            456789999985 66654     78877         455544323455333367888888   799875554  36699


Q ss_pred             EEEecc
Q 043301          231 VEFWDL  236 (244)
Q Consensus       231 ~~~~~~  236 (244)
                      |.||+=
T Consensus        71 v~v~k~   76 (146)
T cd04013          71 VNLYRE   76 (146)
T ss_pred             EEEEEc
Confidence            999843

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.73  E-value=0.084  Score=49.06  Aligned_cols=72  Identities=14%  Similarity=0.112  Sum_probs=50.5

Q ss_pred             cccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCcc-ceeEEEEeccCcccc
Q 043301          163 SFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRS-KNMSVEFWDLDDVLV  241 (244)
Q Consensus       163 ~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  241 (244)
                      -|..||-||-+|||+..+..     ..-....|.||.+-..+++|..++   +|-|...++|.. .-+.|-|||-|--..
T Consensus       244 ~l~ssDsng~sDpyvS~~l~-----pdv~~~fkkKt~~~K~t~~p~fd~---~~~~~i~pgdLa~~kv~lsvgd~~~G~s  315 (362)
T KOG1013|consen  244 HLASSDSNGYSDPYVSQRLS-----PDVGKKFKKKTQQKKKTLNPEFDE---EFFYDIGPGDLAYKKVALSVGDYDIGKS  315 (362)
T ss_pred             eeeccccCCCCCccceeecC-----CCcchhhcccCcchhccCCccccc---cccccCCccchhcceEEEeecccCCCcC
Confidence            37899999999999874411     222223555666444566666666   899999999764 678889999886644


Q ss_pred             c
Q 043301          242 N  242 (244)
Q Consensus       242 ~  242 (244)
                      |
T Consensus       316 ~  316 (362)
T KOG1013|consen  316 N  316 (362)
T ss_pred             c
Confidence            4

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=92.60  E-value=0.055  Score=42.60  Aligned_cols=27  Identities=11%  Similarity=0.185  Sum_probs=22.9

Q ss_pred             cCCCCChhhhhhhhhhcCCCCccceeEEEEecc
Q 043301          204 ESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDL  236 (244)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (244)
                      +.||.|||   .|.|.+   |+.+.+.+.|||=
T Consensus        42 srnd~WnE---~F~i~V---dk~nEiel~VyDk   68 (109)
T cd08689          42 SRNDRWNE---DFEIPV---EKNNEEEVIVYDK   68 (109)
T ss_pred             CCCCcccc---eEEEEe---cCCcEEEEEEEeC
Confidence            57888888   599999   5899999999984

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.79  E-value=0.063  Score=49.84  Aligned_cols=86  Identities=17%  Similarity=0.067  Sum_probs=54.4

Q ss_pred             cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCcccee
Q 043301          150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNM  229 (244)
Q Consensus       150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (244)
                      ...+++++..|.- |-|||.||+-|||++++  +-...-.|+   +-.+++++-..||.|+|+.. .-+--+.+--.+++
T Consensus        92 ~~~~~~tl~~a~~-lk~~~~~~~~d~~~~~~--llpga~kl~---slr~~t~~n~lN~~w~etev-~~~i~~~~~~~K~~  164 (362)
T KOG1013|consen   92 SRMLDTTLDRAKG-LKPMDINGLADPYVKLH--LLPGAGKLN---SLRTKTTRNTLNPEWNETEV-YEGITDDDTHLKVL  164 (362)
T ss_pred             hhhcceeechhcc-cchhhhhhhcchHHhhh--cccchhhhh---hhhHHhhccCcCcceeccce-ecccccchhhhhhh
Confidence            4466789999985 89999999999998854  111122222   23455566677788887532 22333444445677


Q ss_pred             EEEEeccCccccc
Q 043301          230 SVEFWDLDDVLVN  242 (244)
Q Consensus       230 ~~~~~~~~~~~~~  242 (244)
                      .|-|=|=|--++|
T Consensus       165 Rk~vcdn~~~~~~  177 (362)
T KOG1013|consen  165 RKVVCDNDKKTHN  177 (362)
T ss_pred             heeeccCcccccc
Confidence            7777776665554

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=91.51  E-value=0.11  Score=55.24  Aligned_cols=93  Identities=13%  Similarity=0.128  Sum_probs=68.8

Q ss_pred             CcEEEEEeccCCcceeeecccccccccCCCCc-chhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhh
Q 043301          141 DVELRTIQERNPEDLTFHDVFSSFTEKDRNQL-DDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILR  219 (244)
Q Consensus       141 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~n~l-~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  219 (244)
                      .+.+.+.-..+.+.+-|.-++.  .+|..+|- -|||+++=     +.+.+..+.|+|||.+-++.+|..||.   .+|+
T Consensus      1514 qV~LsIsY~~~~LtImV~H~K~--L~~Lqdg~~P~pyVK~Y-----LlPdp~k~sKRKTKvvrkt~~PTfnE~---LvY~ 1583 (1639)
T KOG0905|consen 1514 QVKLSISYNNGTLTIMVMHAKG--LALLQDGQDPDPYVKTY-----LLPDPRKTSKRKTKVVRKTRNPTFNEM---LVYD 1583 (1639)
T ss_pred             eEEEEEEEcCceEEEEhhhhcc--cccccCCCCCCcceeEE-----ecCCchHhhhhhhccccccCCCchhhh---eeec
Confidence            4566666678888888888875  56776665 47787733     355666669999998888999999995   5665


Q ss_pred             -cC-CCCccceeEEEEeccCcccccC
Q 043301          220 -LQ-NSLRSKNMSVEFWDLDDVLVNV  243 (244)
Q Consensus       220 -~~-~~~~~~~~~~~~~~~~~~~~~~  243 (244)
                       .. .-...|+|-|.||--+....||
T Consensus      1584 g~p~~~l~qReLQ~sVls~~~~~en~ 1609 (1639)
T KOG0905|consen 1584 GFPKEILQQRELQVSVLSNGGLLENV 1609 (1639)
T ss_pred             CCchhhhhhheeeeeeecccceeeee
Confidence             22 3356699999999988877776

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=89.88  E-value=0.11  Score=48.90  Aligned_cols=35  Identities=31%  Similarity=0.720  Sum_probs=30.9

Q ss_pred             ccccccccccCCCCC---cEEeCCCCCccccccccCCC
Q 043301           31 VVIICDICETSLQGP---AYGCGTCEFSIHKSCAELPL   65 (244)
Q Consensus        31 ~~~~C~~C~~~i~g~---~Y~C~~C~F~lH~~Ca~~p~   65 (244)
                      ....|.+|.+.|||.   +|+|-.|.+-+|++|+.+.+
T Consensus       140 rr~~c~ic~d~iwglgrqgyrcinckl~vhkkch~~v~  177 (593)
T KOG0695|consen  140 RRAYCGICSDRIWGLGRQGYRCINCKLLVHKKCHGLVP  177 (593)
T ss_pred             cceeeeechhhhhhcccccceeecceeehhhhhccccc
Confidence            457899999999985   79999999999999998743

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=88.60  E-value=0.2  Score=52.40  Aligned_cols=72  Identities=21%  Similarity=0.158  Sum_probs=47.8

Q ss_pred             eeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEee-cCCCCChhhhhhhhhhcCCC-CccceeEEE
Q 043301          155 LTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTIS-ESYPYSDDTLAQFILRLQNS-LRSKNMSVE  232 (244)
Q Consensus       155 ~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  232 (244)
                      +-|-+|+ +|-|.|+||..|||+++..    .++....    ..- .|. .++|+..+     ||.|... -.++-|.|+
T Consensus       617 Vyvv~A~-~L~p~D~ng~adpYv~l~l----Gk~~~~d----~~~-yip~tlnPVfgk-----mfel~~~lp~ek~l~v~  681 (1105)
T KOG1326|consen  617 VYVVEAF-SLQPSDGNGDADPYVKLLL----GKKRTLD----RAH-YIPNTLNPVFGK-----MFELECLLPFEKDLIVE  681 (1105)
T ss_pred             EEEEEee-eccccCCCCCcCceeeeee----ccchhhh----hhh-cCcCCCCcHHHH-----HHHhhcccchhhcceeE
Confidence            6778888 5899999999999977540    0111110    111 222 45677776     4566655 467889999


Q ss_pred             EeccCcccc
Q 043301          233 FWDLDDVLV  241 (244)
Q Consensus       233 ~~~~~~~~~  241 (244)
                      |+|||..+.
T Consensus       682 vyd~D~~~~  690 (1105)
T KOG1326|consen  682 VYDHDLEAQ  690 (1105)
T ss_pred             EEEeecccc
Confidence            999998763

>cd02336 ZZ_RSC8 Zinc finger, ZZ type

Probab=87.78  E-value=0.3  Score=32.46  Aligned_cols=31  Identities=23%  Similarity=0.556  Sum_probs=27.3

Q ss_pred             cccccccCCCCeeEEcCCc-cceeccccccCc
Q 043301           85 RCDACLDECSGMAYRCHEC-CYNLHYHCTALK  115 (244)
Q Consensus        85 ~Cd~Cg~~~~g~~Y~C~~C-d~~lH~~Ca~~p  115 (244)
                      .|+.||......+|+|..+ +++|++.|...-
T Consensus         2 ~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~~G   33 (45)
T cd02336           2 HCFTCGNDCTRVRYHNLKAKKYDLCPSCYQEG   33 (45)
T ss_pred             cccCCCCccCceEEEecCCCccccChHHHhCc
Confidence            6999999999999999977 699999998643

Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=87.41  E-value=0.38  Score=51.15  Aligned_cols=71  Identities=14%  Similarity=0.206  Sum_probs=46.9

Q ss_pred             eeeecccccccccC--CCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301          155 LTFHDVFSSFTEKD--RNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE  232 (244)
Q Consensus       155 ~~v~~~~~~~~~~~--~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (244)
                      +++..|-. |-.-|  -||..|||..++         .+-...-+|+..--..||.|||+   |..=|.  -.+-+|.++
T Consensus       440 vkI~sa~~-lk~~d~~i~~~vDpyit~~---------~~~r~~gkT~v~~nt~nPvwNEt---~Yi~ln--s~~d~L~Ls  504 (1227)
T COG5038         440 VKIKSAEG-LKKSDSTINGTVDPYITVT---------FSDRVIGKTRVKKNTLNPVWNET---FYILLN--SFTDPLNLS  504 (1227)
T ss_pred             EEEeeccC-cccccccccCCCCceEEEE---------eccccCCccceeeccCCccccce---EEEEec--ccCCceeEE
Confidence            57777763 66666  789999997744         11122225563333678999984   654443  566789999


Q ss_pred             EeccCccc
Q 043301          233 FWDLDDVL  240 (244)
Q Consensus       233 ~~~~~~~~  240 (244)
                      |||.++.+
T Consensus       505 lyD~n~~~  512 (1227)
T COG5038         505 LYDFNSFK  512 (1227)
T ss_pred             EEeccccC
Confidence            99987764

>PLN02222 phosphoinositide phospholipase C 2

Probab=86.55  E-value=0.28  Score=49.05  Aligned_cols=61  Identities=20%  Similarity=0.168  Sum_probs=38.0

Q ss_pred             chhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEEEeccCccccc
Q 043301          173 DDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       173 ~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (244)
                      -|||++++  +.+++..   ..+++|+++..+.+|.|||   +|.|.+.--+. -=|.++|||.|..+.|
T Consensus       479 ~dpyV~Ve--i~G~p~D---~~~~rTk~v~nn~nP~W~e---~f~F~i~~PeL-AllRf~V~d~D~~~~d  539 (581)
T PLN02222        479 PDFYTRVG--IAGVPGD---TVMKKTKTLEDNWIPAWDE---VFEFPLTVPEL-ALLRLEVHEYDMSEKD  539 (581)
T ss_pred             CCeeEEEE--EeccCCC---cceeeeEecCCCCCcccCC---eeEEEEEcCce-eEEEEEEEECCCCCCC
Confidence            36676643  3333222   2455777444457888887   68888764332 4467899999987655

>KOG0956 consensus PHD finger protein AF10 [General function prediction only]

Probab=86.45  E-value=0.39  Score=48.55  Aligned_cols=87  Identities=22%  Similarity=0.485  Sum_probs=65.7

Q ss_pred             cccccccccccCCCCCcEEeCCCCCc------------cccccccCCCcCCCC-CC-CCcceEeec----Cccccccccc
Q 043301           30 DVVIICDICETSLQGPAYGCGTCEFS------------IHKSCAELPLKIDHP-FH-CHPLTLSKT----NHHRCDACLD   91 (244)
Q Consensus        30 ~~~~~C~~C~~~i~g~~Y~C~~C~F~------------lH~~Ca~~p~~i~hp-~H-~H~L~L~~~----~~~~Cd~Cg~   91 (244)
                      .+++||.-|...-.-..++|+.|-+.            .|..||.+.++++.. .| .-|..|...    ....|-+|.+
T Consensus        46 tGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAHVVCALYIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E  125 (900)
T KOG0956|consen   46 TGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAHVVCALYIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNE  125 (900)
T ss_pred             CCchhhhhhhhhhhhccceeecccCcccceecccCCCceEEEEEeeccceeecccccccceeeccCchhhhcceeeeecc
Confidence            57899999988877778999999664            799999998877655 34 445555433    4568999988


Q ss_pred             CC------CCeeEEcC--CccceeccccccCcC
Q 043301           92 EC------SGMAYRCH--ECCYNLHYHCTALKP  116 (244)
Q Consensus        92 ~~------~g~~Y~C~--~Cd~~lH~~Ca~~p~  116 (244)
                      .+      .|--|.|.  .|.-.+|+.||...-
T Consensus       126 ~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~G  158 (900)
T KOG0956|consen  126 EGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAG  158 (900)
T ss_pred             cCCccccccccceecccccchhhhhhhHhhhhc
Confidence            63      35568886  688889999997663

>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]

Probab=86.18  E-value=0.52  Score=43.83  Aligned_cols=85  Identities=25%  Similarity=0.485  Sum_probs=53.1

Q ss_pred             cccccccccccCCCCCcEEeCCCCCccc------cccccCCCcC----CCCCCCCcceEeec-------Cccccccc-cc
Q 043301           30 DVVIICDICETSLQGPAYGCGTCEFSIH------KSCAELPLKI----DHPFHCHPLTLSKT-------NHHRCDAC-LD   91 (244)
Q Consensus        30 ~~~~~C~~C~~~i~g~~Y~C~~C~F~lH------~~Ca~~p~~i----~hp~H~H~L~L~~~-------~~~~Cd~C-g~   91 (244)
                      +.+.+| +|-..+.|.+|.|.+|.-.++      +.|-..-...    +.-.|--||+.+..       ...+|-+| +.
T Consensus       261 ~~ps~C-~CH~~~~~~Gy~CP~CkakvCsLP~eCpiC~ltLVss~hLARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~  339 (378)
T KOG2807|consen  261 DTPSFC-ACHSELSGGGYFCPQCKAKVCSLPIECPICSLTLVSSPHLARSYHHLFPLKPFVEIPETEYNGSRFCFACQGE  339 (378)
T ss_pred             cCcchh-eeccccccCceeCCcccCeeecCCccCCccceeEecchHHHHHHHhhcCCcchhhccccccCCCcceeeeccc
Confidence            456677 466777899999998865444      3332210001    11123345555443       44569999 44


Q ss_pred             CCCCeeEEcCCccceeccccccCc
Q 043301           92 ECSGMAYRCHECCYNLHYHCTALK  115 (244)
Q Consensus        92 ~~~g~~Y~C~~Cd~~lH~~Ca~~p  115 (244)
                      ...+-+|+|..|.-.++..|-.+.
T Consensus       340 ~~~~~~y~C~~Ck~~FCldCDv~i  363 (378)
T KOG2807|consen  340 LLSSGRYRCESCKNVFCLDCDVFI  363 (378)
T ss_pred             cCCCCcEEchhccceeeccchHHH
Confidence            566778999999988888886544

>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain

Probab=85.91  E-value=0.74  Score=35.46  Aligned_cols=79  Identities=20%  Similarity=0.407  Sum_probs=52.6

Q ss_pred             cccccccCCCCCcEEeCCCCCccccccccCCCcCCC--CCCCCcceEe---ec-CcccccccccCCCCeeEEcCC--ccc
Q 043301           34 ICDICETSLQGPAYGCGTCEFSIHKSCAELPLKIDH--PFHCHPLTLS---KT-NHHRCDACLDECSGMAYRCHE--CCY  105 (244)
Q Consensus        34 ~C~~C~~~i~g~~Y~C~~C~F~lH~~Ca~~p~~i~h--p~H~H~L~L~---~~-~~~~Cd~Cg~~~~g~~Y~C~~--Cd~  105 (244)
                      .|-+|...  |..++-..-+-.+|..||..-+.+..  ....-+..+.   .. ....|..|++. .|...+|..  |..
T Consensus         2 ~C~lC~~~--~Galk~t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i~~~~~~~~C~iC~~~-~G~~i~C~~~~C~~   78 (110)
T PF13832_consen    2 SCVLCPKR--GGALKRTSDGQWVHVLCALWIPEVIFNNGESMEPVDISNIPPSRFKLKCSICGKS-GGACIKCSHPGCST   78 (110)
T ss_pred             ccEeCCCC--CCcccCccCCcEEEeEccceeCccEEeechhcCcccceeecchhcCCcCcCCCCC-CceeEEcCCCCCCc
Confidence            47778764  33445545577899999997543321  1111111111   11 47899999998 678899997  999


Q ss_pred             eeccccccCc
Q 043301          106 NLHYHCTALK  115 (244)
Q Consensus       106 ~lH~~Ca~~p  115 (244)
                      .+|+.||...
T Consensus        79 ~fH~~CA~~~   88 (110)
T PF13832_consen   79 AFHPTCARKA   88 (110)
T ss_pred             CCCHHHHHHC
Confidence            9999999765

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=85.20  E-value=0.72  Score=47.07  Aligned_cols=64  Identities=23%  Similarity=0.324  Sum_probs=43.0

Q ss_pred             CCcchhhHHHHhhhhcccccccccCCCCceeEee-cCCCCChhhhhhhhhhcCCCCccceeEEEEeccCccccc
Q 043301          170 NQLDDITENIESEIAGIKKTLSETGDQGSKVTIS-ESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       170 n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (244)
                      +..+||++.++  +.+++.   ....++|+++-- .-+|.|+|   +|.|.|.--+.. =+.++|||-|-.+.|
T Consensus       638 ~~~~dP~v~Ve--I~Gvp~---D~~~~~Tk~v~~NgfnP~W~e---~f~F~l~vPELA-liRF~V~d~d~~~~d  702 (746)
T KOG0169|consen  638 GEISDPDVYVE--IAGVPA---DCAEQKTKVVKNNGFNPIWDE---EFEFQLSVPELA-LIRFEVHDYDYIGKD  702 (746)
T ss_pred             cccCCCCEEEE--Eccccc---chhhhhceeeccCCcCcccCC---eEEEEEecccee-EEEEEEEecCCCCcc
Confidence            35789988766  444443   345677773322 44677777   799998765543 467899999988765

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=85.19  E-value=0.63  Score=47.22  Aligned_cols=83  Identities=14%  Similarity=0.115  Sum_probs=51.3

Q ss_pred             cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCC------
Q 043301          150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNS------  223 (244)
Q Consensus       150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------  223 (244)
                      ...+.|.+-.+. -+.|.+-+| +||++...-.    -....  ...+|+....+.+|.|+|   .|.|++..+      
T Consensus       130 ~~~~~c~~L~~r-~~~P~~~~~-~dp~~~v~~~----g~~~~--~~~~T~~~kkt~~p~~~E---v~~f~~~~~~~~s~k  198 (800)
T KOG2059|consen  130 SSGLVCHVLKTR-QGLPIINGQ-CDPFARVTLC----GPSKL--KEKKTKVKKKTTNPQFDE---VFYFEVTREESYSKK  198 (800)
T ss_pred             CCcchhhhhhhc-ccCceeCCC-CCcceEEeec----ccchh--hccccceeeeccCcchhh---heeeeeccccccccc
Confidence            445556666665 478888666 9997552200    00111  114556556677888888   699988776      


Q ss_pred             --------CccceeEEEEec-cCcccccC
Q 043301          224 --------LRSKNMSVEFWD-LDDVLVNV  243 (244)
Q Consensus       224 --------~~~~~~~~~~~~-~~~~~~~~  243 (244)
                              +---.+.|++|| |+....||
T Consensus       199 s~~~~~~e~~~l~irv~lW~~~~~~~~~~  227 (800)
T KOG2059|consen  199 SLFMPEEEDDMLEIRVDLWNDLNLVINDV  227 (800)
T ss_pred             hhcCcccCCceeeEEEeeccchhhhhhhh
Confidence                    112457789999 77766555

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=84.99  E-value=0.54  Score=47.14  Aligned_cols=36  Identities=25%  Similarity=0.598  Sum_probs=31.0

Q ss_pred             cccccccccccCCCCCcEEeCCCCCccccccccCCC
Q 043301           30 DVVIICDICETSLQGPAYGCGTCEFSIHKSCAELPL   65 (244)
Q Consensus        30 ~~~~~C~~C~~~i~g~~Y~C~~C~F~lH~~Ca~~p~   65 (244)
                      ....+|+.|..+++-.+++|+.|+|.+|.+|+...+
T Consensus       187 ~~~~fC~~~~~~~l~~gfrC~~C~~KfHq~Cs~~vp  222 (678)
T KOG0193|consen  187 FPLAFCDSCCNKFLFTGFRCQTCGYKFHQSCSPRVP  222 (678)
T ss_pred             cchhhhhhhcchhhhcccccCCCCCccccccCCCCC
Confidence            446789988888888899999999999999998654

>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]

Probab=84.49  E-value=0.32  Score=48.47  Aligned_cols=45  Identities=24%  Similarity=0.600  Sum_probs=39.5

Q ss_pred             CCcceEeec-CcccccccccCCCCe---eEEcCCccceeccccccCcCc
Q 043301           73 CHPLTLSKT-NHHRCDACLDECSGM---AYRCHECCYNLHYHCTALKPS  117 (244)
Q Consensus        73 ~H~L~L~~~-~~~~Cd~Cg~~~~g~---~Y~C~~Cd~~lH~~Ca~~p~~  117 (244)
                      .|.++.++. .++.|++|...+.|.   +|+|..|+..+|+.|....|+
T Consensus       523 ~H~fqmhtF~~~tsCkvC~mllrGtfYQGY~C~~c~~~ahkecl~~vp~  571 (865)
T KOG2996|consen  523 NHDFQMHTFKNTTSCKVCQMLLRGTFYQGYKCEKCGADAHKECLGRVPP  571 (865)
T ss_pred             CcceEEEeccCCcchHHHHHHhhhhhhcceeeeeccccHHHHhccCCCC
Confidence            789999887 889999999988875   589999999999999877654

>PLN02230 phosphoinositide phospholipase C 4

Probab=84.25  E-value=0.44  Score=47.78  Aligned_cols=61  Identities=20%  Similarity=0.164  Sum_probs=37.6

Q ss_pred             chhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEEEeccCccccc
Q 043301          173 DDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       173 ~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (244)
                      -|||++++  +.+++..   ..+++|++.-...+|.|||   +|.|.|.--+. -=|.|+|||.|.+++|
T Consensus       496 ~DpyV~Ve--i~Gvp~D---~~~~kT~v~~n~~nP~Wne---ef~F~l~vPEL-AllRf~V~d~d~~~~d  556 (598)
T PLN02230        496 PDFFVRVG--IAGAPVD---EVMEKTKIEYDTWTPIWNK---EFIFPLAVPEL-ALLRVEVHEHDINEKD  556 (598)
T ss_pred             CCceEEEE--EEECCCC---CcccceeccCCCCCCccCC---eeEEEEEcCce-eEEEEEEEECCCCCCC
Confidence            47777754  3343321   2345666332356788887   69888775332 4567899999987765

>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]

Probab=84.17  E-value=0.41  Score=48.82  Aligned_cols=34  Identities=21%  Similarity=0.547  Sum_probs=30.0

Q ss_pred             Cccccccccc-CCCCeeEEcCCc-cceeccccccCc
Q 043301           82 NHHRCDACLD-ECSGMAYRCHEC-CYNLHYHCTALK  115 (244)
Q Consensus        82 ~~~~Cd~Cg~-~~~g~~Y~C~~C-d~~lH~~Ca~~p  115 (244)
                      ....|++|++ .+.|++|+|..| +++++..|+..-
T Consensus       602 H~~kCniCk~~pIvG~RyR~l~~fn~dlCq~CF~sg  637 (966)
T KOG4286|consen  602 HQAKCNICKECPIIGFRYRSLKHFNYDICQSCFFSG  637 (966)
T ss_pred             hhhhcchhhhCccceeeeeehhhcChhHHhhHhhhc
Confidence            5679999999 489999999999 899999998643

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=83.23  E-value=0.69  Score=46.93  Aligned_cols=71  Identities=11%  Similarity=0.211  Sum_probs=50.7

Q ss_pred             cceeeecccccccccCCCCcchhhHH--HHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeE
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITEN--IESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMS  230 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~--~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (244)
                      +.+.|+||+| |-+.++.|.+|||-.  +.+|.           --.|.++-+++-|.|-|   .|.|.|-..  =|-|+
T Consensus         7 l~vki~E~kn-L~~~~~~g~~D~yC~v~lD~E~-----------v~RT~tv~ksL~PF~gE---e~~~~iP~~--F~~l~   69 (800)
T KOG2059|consen    7 LKVKIGEAKN-LPSYGPSGMRDCYCTVNLDQEE-----------VCRTATVEKSLCPFFGE---EFYFEIPRT--FRYLS   69 (800)
T ss_pred             eeEEEeeccc-CCCCCCCCCcCcceEEeecchh-----------hhhhhhhhhhcCCcccc---ceEEecCcc--eeeEE
Confidence            4578999985 888899999999844  33321           11244344566688988   698887654  36799


Q ss_pred             EEEeccCcccc
Q 043301          231 VEFWDLDDVLV  241 (244)
Q Consensus       231 ~~~~~~~~~~~  241 (244)
                      +-|||=| .+|
T Consensus        70 fYv~D~d-~~~   79 (800)
T KOG2059|consen   70 FYVWDRD-LKR   79 (800)
T ss_pred             EEEeccc-ccc
Confidence            9999988 555

>PLN02223 phosphoinositide phospholipase C

Probab=82.87  E-value=0.57  Score=46.37  Aligned_cols=60  Identities=20%  Similarity=0.224  Sum_probs=35.1

Q ss_pred             chhhHHHHhhhhcccccccccCCCCceeEee-cCCCCChhhhhhhhhhcCCCCccceeEEEEeccCccccc
Q 043301          173 DDITENIESEIAGIKKTLSETGDQGSKVTIS-ESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       173 ~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (244)
                      -|||++++  +.+++..   ..+++|+ ++. ..||.|||   +|.|.+.--+. -=|.|+|||.|.++.|
T Consensus       435 ~DpyV~Ve--I~Gvp~D---~~~~kT~-v~nNg~nPvWne---~F~F~i~~PEL-AlLrf~V~D~D~~~~d  495 (537)
T PLN02223        435 PDLYVRIS--IAGVPHD---EKIMKTT-VKNNEWKPTWGE---EFTFPLTYPDL-ALISFEVYDYEVSTAD  495 (537)
T ss_pred             CCeEEEEE--EeeccCC---cceeEEE-eCCCCcCceecc---eeEEEEEccCc-eEEEEEEEecCCCCCC
Confidence            46786644  3343332   1223332 333 35677776   69998865442 2357899999987764

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=81.56  E-value=0.74  Score=44.18  Aligned_cols=45  Identities=22%  Similarity=0.531  Sum_probs=34.6

Q ss_pred             CcccccccccCCCCee-EEcCCc-cceeccccccCcCccccCccccCCcC
Q 043301           82 NHHRCDACLDECSGMA-YRCHEC-CYNLHYHCTALKPSINFKELKCVLHE  129 (244)
Q Consensus        82 ~~~~Cd~Cg~~~~g~~-Y~C~~C-d~~lH~~Ca~~p~~i~~~~~~h~~H~  129 (244)
                      ....|+.|...+.|.. .+|.+| +|+++..|+..-..+   +..+..|+
T Consensus        13 ~ky~C~~C~~dit~~i~ikCaeCp~fdLCl~CFs~GaE~---~~H~~~H~   59 (438)
T KOG0457|consen   13 GKYNCDYCSLDITGLIRIKCAECPDFDLCLQCFSVGAET---GKHQNDHP   59 (438)
T ss_pred             CCCCCccHhHHhccceEEEeecCCCcchhHHHHhccccc---CCCCCCCC
Confidence            3578999999998876 999999 599999999866443   33444454

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=81.01  E-value=1.5  Score=28.81  Aligned_cols=32  Identities=28%  Similarity=0.685  Sum_probs=26.6

Q ss_pred             cccccccCC-CCCcEEeCCCCCccccccccCCC
Q 043301           34 ICDICETSL-QGPAYGCGTCEFSIHKSCAELPL   65 (244)
Q Consensus        34 ~C~~C~~~i-~g~~Y~C~~C~F~lH~~Ca~~p~   65 (244)
                      +|..|+... .+..-.|..|+-.+|..|...+.
T Consensus         1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~   33 (51)
T PF00628_consen    1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPE   33 (51)
T ss_dssp             EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSH
T ss_pred             eCcCCCCcCCCCCeEEcCCCChhhCcccCCCCh
Confidence            478888854 45789999999999999998764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=80.20  E-value=1  Score=45.09  Aligned_cols=79  Identities=15%  Similarity=0.248  Sum_probs=51.9

Q ss_pred             CCcceeeecccccccccCC-CCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCC-Cccce
Q 043301          151 NPEDLTFHDVFSSFTEKDR-NQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNS-LRSKN  228 (244)
Q Consensus       151 ~~~~~~v~~~~~~~~~~~~-n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~  228 (244)
                      +++.+.+.-++ +|--||+ ..|.|-.+++|         +..+ --||-+..+++||.||.  +-|.|.++.. ..|.-
T Consensus         3 gkl~vki~a~r-~lpvmdkasd~tdafveik---------~~n~-t~ktdvf~kslnp~wns--dwfkfevddadlqdep   69 (1169)
T KOG1031|consen    3 GKLGVKIKAAR-HLPVMDKASDLTDAFVEIK---------FANT-TFKTDVFLKSLNPQWNS--DWFKFEVDDADLQDEP   69 (1169)
T ss_pred             CcceeEEEecc-CCcccccccccchheeEEE---------eccc-ceehhhhhhhcCCcccc--cceEEecChhhhccCC
Confidence            34556677776 4777884 44555554433         2222 22344456688888984  2388888766 46788


Q ss_pred             eEEEEeccCccccc
Q 043301          229 MSVEFWDLDDVLVN  242 (244)
Q Consensus       229 ~~~~~~~~~~~~~~  242 (244)
                      |.|.+-|.|--|.|
T Consensus        70 lqi~lld~dtysan   83 (1169)
T KOG1031|consen   70 LQIRLLDHDTYSAN   83 (1169)
T ss_pred             eeEEEecccccccc
Confidence            99999999998877

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	244
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	2e-19
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	7e-06
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	3e-04

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 Length = 89

 Score = 79.2 bits (195), Expect = 2e-19
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 49  CGTCEFSIHKSCAELPLKIDHPFH-CHPLTLSKTNHHRCDACLDECSGMAYRCHECCYNL 107
               E    +   + P K+ H  H  H L L++   + CD C +E +  +Y C EC ++L
Sbjct: 12  LKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYHCDECDFDL 71

Query: 108 HYHCTALKPS 117
           H  C AL   
Sbjct: 72  HAKC-ALNED 80

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 Length = 89

 Score = 42.6 bits (100), Expect = 7e-06
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 7/63 (11%)

Query: 9  KLKHTSH-MHYLIFNENEVGHDDVVIICDICETSLQGPAYGCGTCEFSIHKSCAELPLKI 67
          K+KH  H  H L     +V        CD CE      +Y C  C+F +H  CA      
Sbjct: 29 KVKHVLHEEHELELTRVQV------YTCDKCEEEGTIWSYHCDECDFDLHAKCALNEDTK 82

Query: 68 DHP 70
          +  
Sbjct: 83 ESG 85

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 24/104 (23%), Positives = 34/104 (32%), Gaps = 25/104 (24%)

Query: 35  CDICETSLQG---PAYGCGTCEFSIHKSCAEL---------------PLKIDHPFHCHPL 76
           C  C   + G     + C  C F +HK C E                  +  H F  H  
Sbjct: 51  CSHCTDFIWGFGKQGFQCQVCSFVVHKRCHEFVTFSCPGADKGPASDDPRSKHKFKIH-- 108

Query: 77  TLSKTNHHRCDACLDECSGM---AYRCHECCYNLHYHCTALKPS 117
             + ++   CD C     G+     +C  C  N+H  C    PS
Sbjct: 109 --TYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPS 150

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	244
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.94
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	99.47
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	99.46
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.14
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.13
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.11
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.04
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	98.99
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	98.99
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	98.98
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	98.95
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	98.95
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	98.94
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	98.93
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	98.92
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	98.91
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	98.9
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	98.89
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	98.89
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	98.89
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	98.88
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	98.88
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	98.88
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	98.87
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	98.87
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	98.85
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	98.81
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	98.7
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	98.7
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	98.7
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	98.69
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	98.67
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	98.66
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	98.6
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	98.59
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	98.57
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	98.56
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	98.56
2eli_A	85	Protein kinase C alpha type; PKC-alpha, PKC-A, str	98.55
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	98.54
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	98.53
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	98.47
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	98.46
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	98.29
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	98.19
2enz_A	65	NPKC-theta, protein kinase C theta type; zinc bind	98.08
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	97.95
1ptq_A	50	Protein kinase C delta type; phosphotransferase; 1	97.92
1rfh_A	59	RAS association (ralgds/AF-6) domain family 5; zin	97.92
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	97.91
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	97.9
1kbe_A	49	Kinase suppressor of RAS; KSR, cysteine-rich domai	97.88
2fnf_X	72	Putative RAS effector NORE1; zinc, signal transduc	97.86
2row_A	84	RHO-associated protein kinase 2; ATP-binding, coil	97.83
2row_A	84	RHO-associated protein kinase 2; ATP-binding, coil	97.83
2enz_A	65	NPKC-theta, protein kinase C theta type; zinc bind	97.82
1faq_A	52	RAF-1; transferase, serine/threonine-protein kinas	97.82
2eli_A	85	Protein kinase C alpha type; PKC-alpha, PKC-A, str	97.8
1ptq_A	50	Protein kinase C delta type; phosphotransferase; 1	97.79
3uej_A	65	NPKC-delta, protein kinase C delta type; proteine	97.79
1y8f_A	66	UNC-13 homolog A, MUNC13-1; cysteine-rich domain,	97.76
2db6_A	74	SH3 and cysteine rich domain 3; STAC3, C1 domain,	97.75
2enn_A	77	NPKC-theta, protein kinase C theta type; zinc bind	97.73
3uej_A	65	NPKC-delta, protein kinase C delta type; proteine	97.73
2yuu_A	83	NPKC-delta, protein kinase C delta type; metal bin	97.71
2db6_A	74	SH3 and cysteine rich domain 3; STAC3, C1 domain,	97.68
2enn_A	77	NPKC-theta, protein kinase C theta type; zinc bind	97.65
1faq_A	52	RAF-1; transferase, serine/threonine-protein kinas	97.65
2yuu_A	83	NPKC-delta, protein kinase C delta type; metal bin	97.65
2fnf_X	72	Putative RAS effector NORE1; zinc, signal transduc	97.64
1rfh_A	59	RAS association (ralgds/AF-6) domain family 5; zin	97.63
1y8f_A	66	UNC-13 homolog A, MUNC13-1; cysteine-rich domain,	97.62
1kbe_A	49	Kinase suppressor of RAS; KSR, cysteine-rich domai	97.29
2e5r_A	63	Dystrobrevin alpha; ZZ domain, structural genomics	97.17
2fc7_A	82	ZZZ3 protein; structure genomics, ZZ domain, struc	97.03
4b6d_A	61	RAC GTPase-activating protein 1; signaling protein	96.97
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	96.82
2dip_A	98	Zinc finger SWIM domain-containing protein 2; ZZ d	96.8
2e5r_A	63	Dystrobrevin alpha; ZZ domain, structural genomics	96.76
1tot_A	52	CREB-binding protein; zinc binding, CBP, TAZ2, tra	96.73
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	96.39
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	96.38
2dip_A	98	Zinc finger SWIM domain-containing protein 2; ZZ d	96.28
4b6d_A	61	RAC GTPase-activating protein 1; signaling protein	96.15
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	96.07
2fc7_A	82	ZZZ3 protein; structure genomics, ZZ domain, struc	96.06
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	96.03
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	95.94
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	95.76
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	95.75
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	95.72
1tot_A	52	CREB-binding protein; zinc binding, CBP, TAZ2, tra	95.44
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	95.35
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	95.3
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	90.49
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	85.13
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	82.61
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	81.49
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	81.28

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.94  E-value=5.5e-28  Score=238.48  Aligned_cols=200  Identities=23%  Similarity=0.389  Sum_probs=123.5

Q ss_pred             CCCEeeeeccCCCcccccccccccCCCC---CcEEeCCCCCccccccccCCCcC----------CCCCCCCcceEeec-C
Q 043301           17 HYLIFNENEVGHDDVVIICDICETSLQG---PAYGCGTCEFSIHKSCAELPLKI----------DHPFHCHPLTLSKT-N   82 (244)
Q Consensus        17 H~L~L~~~~~~~~~~~~~C~~C~~~i~g---~~Y~C~~C~F~lH~~Ca~~p~~i----------~hp~H~H~L~L~~~-~   82 (244)
                      |.++. ..    ...+++|++|+..|||   .+|+|..|++.+|++|.......          +.+.-.|.+...++ .
T Consensus        38 H~f~~-~~----~~~p~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~~~c~~~~~~~~~~~~~~~h~~~~~~~~~  112 (674)
T 3pfq_A           38 HKFTA-RF----FKQPTFCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHEFVTFSCPGADKGPASDDPRSKHKFKIHTYSS  112 (674)
T ss_dssp             ---------------------------------------------------------------------CCCCCEECCSS
T ss_pred             ceEEe-ee----CCCCCccccccccccccCCceeECCCCCCCcChhhcCcCcccCCCcccccccccccCCcceeecCCCC
Confidence            66655 11    3568999999999998   48999999999999999864321          12334789988887 8


Q ss_pred             cccccccccCCCCe---eEEcCCccceeccccccCcCccccCccccCCcCccccccccCCCCcEEEEEeccCCcceeeec
Q 043301           83 HHRCDACLDECSGM---AYRCHECCYNLHYHCTALKPSINFKELKCVLHEVMQSLLEKQPQDVELRTIQERNPEDLTFHD  159 (244)
Q Consensus        83 ~~~Cd~Cg~~~~g~---~Y~C~~Cd~~lH~~Ca~~p~~i~~~~~~h~~H~h~l~L~~~~p~~~~~~~~~~~~~~~~~v~~  159 (244)
                      +++|++|++.+.|.   +|+|..|++++|.+|....+.+  |+.++...+          |++.+......+.+.++|.+
T Consensus       113 ~~~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~v~~~--C~~d~~~~~----------g~i~~~~~~~~~~L~V~v~~  180 (674)
T 3pfq_A          113 PTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSL--CGTDHTERR----------GRIYIQAHIDREVLIVVVRD  180 (674)
T ss_dssp             CCCCSSSCSCCBBSSSCEECCSSSCCCBCSSTTSSSCCC--SSSCSSCCS----------CEEEEEEEECSSEEEEEEEE
T ss_pred             CCCCCccccccchhhcCccccccCCcchhhhhhhccCcc--ccccccccc----------ccccccceeccceeeeeeec
Confidence            89999999988774   7999999999999999999888  888888776          77777777778889999999


Q ss_pred             ccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEEEeccCcc
Q 043301          160 VFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDV  239 (244)
Q Consensus       160 ~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (244)
                      |. +|.+||++|.+|||+++.     +...-....+++|++.-.+++|.|||   +|.|.+..++.+++|.|||||||+.
T Consensus       181 a~-~L~~~d~~g~sDPyvkv~-----l~p~~~~~~k~kT~v~~~tlnP~wne---~f~f~~~~~~~~~~L~v~v~d~d~~  251 (674)
T 3pfq_A          181 AK-NLVPMDPNGLSDPYVKLK-----LIPDPKSESKQKTKTIKSSLNPEWNE---TFRFQLKESDKDRRLSVEIWDWDLT  251 (674)
T ss_dssp             EE-SCCCCSTTSSCCEEEEEE-----EESCSSCCSCEECCCCSSCSSCEEEE---EEEEECCSTTTTCEEEEEEEECCSS
T ss_pred             cc-ccCCCCcccccCcccccc-----cccCccccccccccccccccCCCccc---eeeeecccCCccceeeeEEeecccc
Confidence            97 589999999999998854     11111112456677455577787877   6999999999999999999999999


Q ss_pred             ccc
Q 043301          240 LVN  242 (244)
Q Consensus       240 ~~~  242 (244)
                      ++|
T Consensus       252 ~~d  254 (674)
T 3pfq_A          252 SRN  254 (674)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            886

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3

Probab=99.47  E-value=1.6e-14  Score=108.57  Aligned_cols=59  Identities=31%  Similarity=0.448  Sum_probs=52.6

Q ss_pred             CcCCCCCceEeCCCC-CCCEeeeeccCCCcccccccccccCCCCCcEEeCCCCCccccccccCCCc
Q 043301            2 EKQFERDKLKHTSHM-HYLIFNENEVGHDDVVIICDICETSLQGPAYGCGTCEFSIHKSCAELPLK   66 (244)
Q Consensus         2 ~~a~~p~~I~HpsHp-H~L~L~~~~~~~~~~~~~C~~C~~~i~g~~Y~C~~C~F~lH~~Ca~~p~~   66 (244)
                      +||++|.+|+|++|| |+|+| ...     .++.|++|++.+.|++|+|..|+|+||..||..|..
T Consensus        22 ~Ca~lP~~i~Hp~Hp~H~L~L-~~~-----~~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~~p~~   81 (89)
T 1v5n_A           22 IAKDWPKKVKHVLHEEHELEL-TRV-----QVYTCDKCEEEGTIWSYHCDECDFDLHAKCALNEDT   81 (89)
T ss_dssp             HTSSSCSEECCSTTTTSCEEE-ECC-----SSCCCTTTSCCCCSCEEECTTTCCCCCHHHHHCSSC
T ss_pred             HHHcCCceecCCCCCCCccEE-eeC-----CCeEeCCCCCcCCCcEEEcCCCCCeEcHHhcCCCCc
Confidence            489999999999998 99999 332     257899999999999999999999999999998764

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3

Probab=99.46  E-value=1.6e-14  Score=108.71  Aligned_cols=64  Identities=30%  Similarity=0.626  Sum_probs=59.5

Q ss_pred             CCccccccccCCCcCCCCCC-CCcceEeecCcccccccccCCCCeeEEcCCccceeccccccCcC
Q 043301           53 EFSIHKSCAELPLKIDHPFH-CHPLTLSKTNHHRCDACLDECSGMAYRCHECCYNLHYHCTALKP  116 (244)
Q Consensus        53 ~F~lH~~Ca~~p~~i~hp~H-~H~L~L~~~~~~~Cd~Cg~~~~g~~Y~C~~Cd~~lH~~Ca~~p~  116 (244)
                      +..+|+.|+.+|.+|.|+.| .|+|+|....++.|++|++.+.||+|+|..|+|++|+.|+..++
T Consensus        16 ~~~lhe~Ca~lP~~i~Hp~Hp~H~L~L~~~~~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~~p~   80 (89)
T 1v5n_A           16 EAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYHCDECDFDLHAKCALNED   80 (89)
T ss_dssp             HHHHHHHTSSSCSEECCSTTTTSCEEEECCSSCCCTTTSCCCCSCEEECTTTCCCCCHHHHHCSS
T ss_pred             HHHHhHHHHcCCceecCCCCCCCccEEeeCCCeEeCCCCCcCCCcEEEcCCCCCeEcHHhcCCCC
Confidence            45899999999999999999 69999987667899999999999999999999999999999884

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.14  E-value=9.8e-12  Score=99.60  Aligned_cols=90  Identities=22%  Similarity=0.294  Sum_probs=71.4

Q ss_pred             CCcEEEEEeccCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccc----cCCCCceeEeecCCCCChhhhhh
Q 043301          140 QDVELRTIQERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE----TGDQGSKVTISESYPYSDDTLAQ  215 (244)
Q Consensus       140 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~----~~~~~~~~~i~~~~~~~~~~~~~  215 (244)
                      |.+.+.+....+.|.++|-+|. +|.++|.+|.+|||+++.         +.+    ...++|++.-.+.+|.|||   +
T Consensus        20 G~l~~~l~~~~~~L~v~v~~a~-~L~~~d~~g~~dpyv~v~---------~~~~~~~~~~~kT~v~~~t~nP~wne---~   86 (149)
T 1a25_A           20 GRIYIQAHIDREVLIVVVRDAK-NLVPMDPNGLSDPYVKLK---------LIPDPKSESKQKTKTIKCSLNPEWNE---T   86 (149)
T ss_dssp             CEEEEEEEESSSEEEEEEEEEE-SCCCCSTTSCCCEEEEEE---------EESCTTCSSCEECCCCSSCSSCEEEE---E
T ss_pred             eEEEEEEEecCCEEEEEEEEee-CCCCCCCCCCcCeEEEEE---------EECCCCCcceEecceeCCCCCCcCCc---E
Confidence            6677776666778999999998 589999999999998744         332    2455666444477888887   6


Q ss_pred             hhhhcCCCCccceeEEEEeccCccccc
Q 043301          216 FILRLQNSLRSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (244)
                      |.|.+.+.+.++.|.|+|||||+.+++
T Consensus        87 f~f~v~~~~~~~~L~i~V~d~d~~~~~  113 (149)
T 1a25_A           87 FRFQLKESDKDRRLSVEIWDWDLTSRN  113 (149)
T ss_dssp             EEEECCSGGGGCEEEEEEEECCSSSCC
T ss_pred             EEEEeccccCCCEEEEEEEECCCCCCC
Confidence            999999888889999999999998764

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.11  E-value=4.1e-12  Score=103.71  Aligned_cols=90  Identities=7%  Similarity=0.054  Sum_probs=68.5

Q ss_pred             CCcEEEEEe--ccCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccc-----cCCCCceeEeecCCCCChhh
Q 043301          140 QDVELRTIQ--ERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE-----TGDQGSKVTISESYPYSDDT  212 (244)
Q Consensus       140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~-----~~~~~~~~~i~~~~~~~~~~  212 (244)
                      |++++...-  ..+.|.+.|-+|. +|.+||.+|.+|||+++.         |.+     ..+++|++.-.++||.||| 
T Consensus        30 G~l~~sl~y~~~~~~L~V~Vi~a~-~L~~~d~~g~sDPyVkv~---------l~~~~~~~~~~~kT~v~~~tlnP~wnE-   98 (155)
T 2z0u_A           30 TRIQIALKYDEKNKQFAILIIQLS-NLSALLQQQDQKVNIRVA---------VLPCSESTTCLFRTRPLDASDTLVFNE-   98 (155)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEEE-CGGGTCCSCCSEEEEEEE---------EESCSCHHHHEEECCCEECCSSEEEEE-
T ss_pred             EEEEEEEEEcCCCCEEEEEEEEcc-CcCCcccCCCCCEEEEEE---------EecCCCCCccceeCCcCCCCCCCcccc-
Confidence            445554443  3567889999998 589999999999998743         433     1357788555678888887 


Q ss_pred             hhhhhhhcCCCC-ccceeEEEEeccCccccc
Q 043301          213 LAQFILRLQNSL-RSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       213 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  242 (244)
                        +|.|.+..++ .++.|.|+|||||+.++|
T Consensus        99 --~F~f~v~~~~l~~~~L~~~V~d~d~~~~~  127 (155)
T 2z0u_A           99 --VFWVSMSYPALHQKTLRVDVCTTDRSHLE  127 (155)
T ss_dssp             --EEEEECCHHHHHHCEEEEEEEEECTTSCE
T ss_pred             --EEEEEcCHHHhCcCEEEEEEEECCCCCCC
Confidence              6999987765 478899999999998876

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.04  E-value=4e-11  Score=96.66  Aligned_cols=88  Identities=16%  Similarity=0.104  Sum_probs=66.9

Q ss_pred             CCcEEEEEe--ccCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhh
Q 043301          140 QDVELRTIQ--ERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTL  213 (244)
Q Consensus       140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~  213 (244)
                      |.+++....  ..+.|.++|-+|. +|.++| +|.+|||+++.         |.+.    .+++|++.-.+.+|.|||  
T Consensus        14 G~~~lsL~y~~~~~~L~V~v~~a~-~L~~~d-~g~~Dpyv~v~---------l~~~~~~~~~~kT~v~~~t~nP~wne--   80 (153)
T 3fbk_A           14 GAGQLRLSIDAQDRVLLLHIIEGK-GLISKQ-PGTCDPYVKIS---------LIPEDSRLRHQKTQTVPDCRDPAFHE--   80 (153)
T ss_dssp             CCCEEEEEEEESSSEEEEEEEEEE-SCCCCS-SSCCCEEEEEE---------EESCSCCTTCEECCCCTTCSSCEEEE--
T ss_pred             CEEEEEEEEECCCCEEEEEEEEee-CCCCCC-CCCCCEEEEEE---------EEcCCCCccEEeccccCCCCCCcccc--
Confidence            556555544  5778999999997 589999 79999998743         3222    345566334477788887  


Q ss_pred             hhhhhhcCCCCccceeEEEEeccCcccc
Q 043301          214 AQFILRLQNSLRSKNMSVEFWDLDDVLV  241 (244)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (244)
                       +|.|.+.+++.+++|.|+|||||+.++
T Consensus        81 -~f~f~v~~~~~~~~L~i~V~d~d~~~~  107 (153)
T 3fbk_A           81 -HFFFPVQEEDDQKRLLVTVWNRASQSR  107 (153)
T ss_dssp             -EEEEECCGGGTTSEEEEEEEECCSSGG
T ss_pred             -EEEEecccHHhCCEEEEEEEeCCCCCC
Confidence             699999888888889999999999765

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=98.99  E-value=2.6e-11  Score=95.92  Aligned_cols=90  Identities=16%  Similarity=0.193  Sum_probs=68.7

Q ss_pred             CCcEEEEEeccCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc-------------CCCCceeEeecCC
Q 043301          140 QDVELRTIQERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET-------------GDQGSKVTISESY  206 (244)
Q Consensus       140 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~-------------~~~~~~~~i~~~~  206 (244)
                      |++.+.+.-..+.+.++|-+|. +|.++|.+|.+|||+++.         +.+.             .+++|++.-.+.+
T Consensus         7 G~i~~~l~y~~~~L~V~v~~a~-~L~~~d~~g~~Dpyv~v~---------~~~~~~~~~~~~~~~~~~~~kT~v~~~t~n   76 (142)
T 1rh8_A            7 GEIQLQINYDLGNLIIHILQAR-NLVPRDNNGYSDPFVKVY---------LLPGRGQVMVVQNASAEYKRRTKYVQKSLN   76 (142)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEE-SCCCCSSSSCSCCEEEEE---------ETTSSCCCEECCCCCHHHHTTTTTTHHHHS
T ss_pred             eEEEEEEEEcCCEEEEEEEEec-CCCCCCCCCCCCceEEEE---------EecCCCcccccccccccceeeccccCCCCC
Confidence            6677776666778999999998 589999999999998744         2222             2456664445778


Q ss_pred             CCChhhhhhhhhh-cCCCC-ccceeEEEEeccCccccc
Q 043301          207 PYSDDTLAQFILR-LQNSL-RSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       207 ~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~  242 (244)
                      |.|||   +|.|. +..++ .++.|.|+|||||+.+++
T Consensus        77 P~wne---~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~  111 (142)
T 1rh8_A           77 PEWNQ---TVIYKSISMEQLMKKTLEVTVWDYDRFSSN  111 (142)
T ss_dssp             CEEEE---EEEECSCCHHHHTTCEEEEEEEEECSSSCE
T ss_pred             CCCCC---EEEECCcCHHHccCCEEEEEEEECCCCCCC
Confidence            88887   69987 66655 578999999999998764

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=98.99  E-value=8.6e-11  Score=93.24  Aligned_cols=87  Identities=6%  Similarity=0.009  Sum_probs=64.1

Q ss_pred             CCcEEEEEe--ccCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccc---cCCCCceeEeecCCCCChhhhh
Q 043301          140 QDVELRTIQ--ERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE---TGDQGSKVTISESYPYSDDTLA  214 (244)
Q Consensus       140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~---~~~~~~~~~i~~~~~~~~~~~~  214 (244)
                      |++++.+..  ..+.|.++|-+|.    +||.+|.+|||+++.         |.+   ...++|++.-.+.+|.|||   
T Consensus        13 G~l~~sl~y~~~~~~L~V~v~~a~----~~d~~g~sDPyv~v~---------l~~~~~~~~~kT~v~~~tlnP~wnE---   76 (138)
T 1wfm_A           13 PKLHYCLDYDCQKAELFVTRLEAV----TSNHDGGCDCYVQGS---------VANRTGSVEAQTALKKRQLHTTWEE---   76 (138)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEE----CCCCSSCCCEEEEEE---------EEETTEEEEEECCCCCCCSSEECSS---
T ss_pred             eEEEEEEEEeCCCCEEEEEEEEEE----cCCCCCCcceEEEEE---------EEcCCCcccEecccCcCCCCCcCCc---
Confidence            555555544  3556778888886    589999999998843         322   2345677444577888887   


Q ss_pred             hhhhhcCCCCc-cceeEEEEeccCccccc
Q 043301          215 QFILRLQNSLR-SKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       215 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  242 (244)
                      +|.|.+..++. ++.|.|+|||||+.++|
T Consensus        77 ~f~f~v~~~~l~~~~L~~~V~d~d~~~~d  105 (138)
T 1wfm_A           77 GLVLPLAEEELPTATLTLTLRTCDRFSRH  105 (138)
T ss_dssp             CEEEECCTTSSTTCEEEEEEEECCSSCTT
T ss_pred             eEEEEecHHHcCCCEEEEEEEECCCCCCC
Confidence            69999987765 68899999999998775

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=98.98  E-value=6.5e-11  Score=93.62  Aligned_cols=88  Identities=9%  Similarity=0.124  Sum_probs=65.6

Q ss_pred             CcEEEEEeccCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccc----cCCCCceeEeecCCCCChhhhhhh
Q 043301          141 DVELRTIQERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE----TGDQGSKVTISESYPYSDDTLAQF  216 (244)
Q Consensus       141 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~----~~~~~~~~~i~~~~~~~~~~~~~~  216 (244)
                      -+.++.....+.|.++|-+|.+ |.+ |.+|.+|||+++.         +.+    ..+++|++.-.+.+|.|||   +|
T Consensus        10 ~~~~~~~~~~~~L~V~V~~a~~-L~~-~~~g~~DPyv~v~---------l~~~~~~~~~~kT~v~~~t~nP~wnE---~f   75 (134)
T 2b3r_A           10 AVKLSVSYRNGTLFIMVMHIKD-LVT-EDGADPNPYVKTY---------LLPDTHKTSKRKTKISRKTRNPTFNE---ML   75 (134)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEC-CCC-TTSCCCCEEEEEE---------EESCSSSCCCEECCCCCSCSSCEEEE---EE
T ss_pred             EEEEEEeecCCEEEEEEEEeeC-CCC-CCCCCCCeEEEEE---------EEcCCCCCceecCCcCcCCCCCCCcc---EE
Confidence            3455555668889999999985 554 8899999998743         322    2455677444577888887   69


Q ss_pred             hhh-cCCCC-ccceeEEEEeccCccccc
Q 043301          217 ILR-LQNSL-RSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       217 ~~~-~~~~~-~~~~~~~~~~~~~~~~~~  242 (244)
                      .|. +..++ .++.|.|+|||||+.++|
T Consensus        76 ~f~~v~~~~l~~~~L~~~V~d~d~~~~~  103 (134)
T 2b3r_A           76 VYSGYSKETLRQRELQLSVLSAESLREN  103 (134)
T ss_dssp             EEESCCHHHHTTCEEEEEEEECCSSSCC
T ss_pred             EECCcCHHHhCcCEEEEEEEECCCCCCC
Confidence            998 77665 678999999999998775

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=98.95  E-value=4.6e-10  Score=88.26  Aligned_cols=89  Identities=11%  Similarity=0.183  Sum_probs=66.4

Q ss_pred             CCcEEEEEec--cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccc----cCCCCceeEeecCCCCChhhh
Q 043301          140 QDVELRTIQE--RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE----TGDQGSKVTISESYPYSDDTL  213 (244)
Q Consensus       140 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~----~~~~~~~~~i~~~~~~~~~~~  213 (244)
                      |.+.+.+...  .+.|.++|-+|. +|.++|.+|.+|||+++.         +.+    ...++|++.-.+.+|.|||  
T Consensus         8 G~i~~~l~y~~~~~~L~v~v~~a~-~L~~~d~~g~~dpyv~v~---------~~~~~~~~~~~kT~~~~~t~nP~wne--   75 (141)
T 1v27_A            8 GQLSIKLWFDKVGHQLIVTILGAK-DLPSREDGRPRNPYVKIY---------FLPDRSDKNKRRTKTVKKTLEPKWNQ--   75 (141)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEE-SCCCCSSSCCCCEEEECC---------CSSCCSSSSCCBCCCCSSCSSCCCCC--
T ss_pred             cEEEEEEEEeCCCCEEEEEEEEcc-CCCCcCCCCCCCCEEEEE---------EecCCCCCcceeCccccCCCCCcccc--
Confidence            5666665543  556889999998 489999999999998744         322    3456677445577899988  


Q ss_pred             hhhhhhc-CCC-CccceeEEEEeccCcccc
Q 043301          214 AQFILRL-QNS-LRSKNMSVEFWDLDDVLV  241 (244)
Q Consensus       214 ~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~  241 (244)
                       +|.|.+ ..+ ..++.|.|+|||||+.++
T Consensus        76 -~f~f~~~~~~~~~~~~l~i~V~d~d~~~~  104 (141)
T 1v27_A           76 -TFIYSPVHRREFRERMLEITLWDQARVRE  104 (141)
T ss_dssp             -CCEECSCCTTGGGTCEEEEEEEEBCSSSS
T ss_pred             -EEEEccCCHHHhcCCEEEEEEEECCCCcC
Confidence             699985 433 367899999999999875

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=98.95  E-value=1.4e-10  Score=94.50  Aligned_cols=90  Identities=13%  Similarity=0.197  Sum_probs=67.9

Q ss_pred             CCcEEEEEe--ccCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccc----cCCCCceeEeecCCCCChhhh
Q 043301          140 QDVELRTIQ--ERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE----TGDQGSKVTISESYPYSDDTL  213 (244)
Q Consensus       140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~----~~~~~~~~~i~~~~~~~~~~~  213 (244)
                      |.+.+.+..  ..+.+.++|-+|. +|.++|.+|.+|||+++.         +.+    ...++|++.-.+.+|.|||  
T Consensus        24 G~l~~~l~y~~~~~~L~V~v~~a~-~L~~~d~~g~~DPyv~v~---------l~~~~~~~~~~kT~v~~~t~nP~wne--   91 (166)
T 2cm5_A           24 GKILVSLMYSTQQGGLIVGIIRCV-HLAAMDANGYSDPFVKLW---------LKPDMGKKAKHKTQIKKKTLNPEFNE--   91 (166)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEE-SCCCCSTTSCCCEEEEEE---------EETC---CCEEECCCCCSCSSCEEEE--
T ss_pred             ceEEEEEEEECCCCEEEEEEEEeE-CCCCccCCCCCCcEEEEE---------EECCCCccceEeCCcccCCCCCcccc--
Confidence            555555544  3567889999997 589999999999998743         332    2455666444577888887  


Q ss_pred             hhhhhhcCCCCc-cceeEEEEeccCccccc
Q 043301          214 AQFILRLQNSLR-SKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       214 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  242 (244)
                       +|.|.+...+. ++.|.|+|||||+.+++
T Consensus        92 -~f~f~v~~~~l~~~~L~i~V~d~d~~~~~  120 (166)
T 2cm5_A           92 -EFFYDIKHSDLAKKSLDISVWDYDIGKSN  120 (166)
T ss_dssp             -EEEEECCGGGGGGCEEEEEEEECCSSSCC
T ss_pred             -eEEEEcchHhcCCCEEEEEEEECCCCCCC
Confidence             69999987664 78999999999998764

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=98.94  E-value=1.6e-10  Score=92.32  Aligned_cols=90  Identities=11%  Similarity=0.174  Sum_probs=67.2

Q ss_pred             CCcEEEEEec--cCCcceeeecccccccccC-CCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhh
Q 043301          140 QDVELRTIQE--RNPEDLTFHDVFSSFTEKD-RNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDT  212 (244)
Q Consensus       140 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~-~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~  212 (244)
                      |.+.+.+...  .+.+.++|-+|. +|.++| .+|.+|||+++.         |.+.    .+++|++.-.+.+|.||| 
T Consensus        10 G~l~~sl~y~~~~~~L~V~v~~a~-~L~~~d~~~~~~dpyv~v~---------l~~~~~~~~~~kT~v~~~t~nP~wne-   78 (148)
T 3fdw_A           10 GRIAFSLKYEQQTQSLVVHVKECH-QLAYADEAKKRSNPYVKTY---------LLPDKSRQGKRKTSIKRDTVNPLYDE-   78 (148)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEE-SCCCSBTTTTBCCEEEEEE---------EETCCSGGGEEECCCCSSCSSCEEEE-
T ss_pred             eEEEEEEEEeCCCCEEEEEEEEec-CCCCcccCCCCCCeEEEEE---------EEcCCcccCccccccCCCCCCCcEee-
Confidence            6666665543  567889999997 489999 589999998743         3332    245666444477888887 


Q ss_pred             hhhhhhhcCCCCc-cceeEEEEeccCccccc
Q 043301          213 LAQFILRLQNSLR-SKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       213 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  242 (244)
                        +|.|.+..++. ++.|.|+|||||+.++|
T Consensus        79 --~f~f~v~~~~~~~~~L~~~V~d~d~~~~~  107 (148)
T 3fdw_A           79 --TLRYEIPESLLAQRTLQFSVWHHGRFGRN  107 (148)
T ss_dssp             --EEEEECCSTTGGGCEEEEEEEEECGGGCE
T ss_pred             --EEEEEeChhHhCceEEEEEEEECCCCcCC
Confidence              69999988774 67899999999998765

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=98.93  E-value=1.3e-10  Score=93.16  Aligned_cols=90  Identities=10%  Similarity=0.090  Sum_probs=61.4

Q ss_pred             CCcEEEEEe--ccCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhh
Q 043301          140 QDVELRTIQ--ERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTL  213 (244)
Q Consensus       140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~  213 (244)
                      |.+.+.+..  ..+.|.+.|-+|. +|.++|.+|.+|||+++.         +.+.    .+++|++.-.+.+|.|||  
T Consensus        17 G~l~~~l~y~~~~~~L~v~v~~a~-~L~~~d~~g~~dpyv~v~---------~~~~~~~~~~~kT~v~~~t~nP~wne--   84 (153)
T 1w15_A           17 GELLVSLCYQSTTNTLTVVVLKAR-HLPKSDVSGLSDPYVKVN---------LYHAKKRISKKKTHVKKCTPNAVFNE--   84 (153)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEE-SCC------CCCEEEEEE---------EEETTEEEEEEECCCCCSCSSEEEEE--
T ss_pred             cEEEEEEEEcCCCCEEEEEEEEeE-CCCCcCCCCCCCeEEEEE---------EEeCCeEeceEecCcccCCCCCeecc--
Confidence            555555544  4567889999997 589999999999998744         3222    245677444577788887  


Q ss_pred             hhhhhhcCCCCc-cceeEEEEeccCccccc
Q 043301          214 AQFILRLQNSLR-SKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       214 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  242 (244)
                       +|.|.+...+. ++.|.|+|||||+.+++
T Consensus        85 -~f~f~v~~~~l~~~~l~v~V~d~d~~~~~  113 (153)
T 1w15_A           85 -LFVFDIPCESLEEISVEFLVLDSERGSRN  113 (153)
T ss_dssp             -EEEEECCSSSSTTEEEEEEEEECCTTSCC
T ss_pred             -eEEEECCHHHhCceEEEEEEEeCCCCCCC
Confidence             79999988765 48899999999988765

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.92  E-value=2.4e-10  Score=90.48  Aligned_cols=90  Identities=13%  Similarity=0.108  Sum_probs=66.0

Q ss_pred             CCcEEEEEe--ccCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc--CCCCceeEeecCCCCChhhhhh
Q 043301          140 QDVELRTIQ--ERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET--GDQGSKVTISESYPYSDDTLAQ  215 (244)
Q Consensus       140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~--~~~~~~~~i~~~~~~~~~~~~~  215 (244)
                      |.+.+.+..  ..+.|.++|-+|. +|.++|.+|.+|||+++.         +.+.  ..++|++.-.+.+|.|||   +
T Consensus        13 G~l~~~l~y~~~~~~L~v~v~~a~-~L~~~d~~g~~dpyv~v~---------~~~~~~~~~kT~v~~~t~nP~wne---~   79 (141)
T 2d8k_A           13 GRIQFSVGYNFQESTLTVKIMKAQ-ELPAKDFSGTSDPFVKIY---------LLPDKKHKLETKVKRKNLNPHWNE---T   79 (141)
T ss_dssp             CEEEEEEEECSSSCCEEEEEEEEE-SCCCCSSSSCCCEEEEEE---------EESCCSSEEECCCCTTCSSCCCCE---E
T ss_pred             eEEEEEEEEeCCCCEEEEEEEEeE-CCCCCCCCCCCCcEEEEE---------EECCCCccEeCceEcCCCCCcccc---E
Confidence            556665554  4677889999998 589999999999998743         3322  345566434477898987   6


Q ss_pred             hhhhcCCC--CccceeEEEEeccCccccc
Q 043301          216 FILRLQNS--LRSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       216 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~  242 (244)
                      |.|.+-+.  ..++.|.|+|||||+.+++
T Consensus        80 f~f~~~~~~~~~~~~l~i~V~d~d~~~~~  108 (141)
T 2d8k_A           80 FLFEGFPYEKVVQRILYLQVLDYDRFSRN  108 (141)
T ss_dssp             EEECSCCHHHHTTSEEEEEEEECCSSSSC
T ss_pred             EEECccCHHHcccCEEEEEEEECCCCCCC
Confidence            99986443  2468899999999998765

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=98.91  E-value=2.6e-10  Score=89.92  Aligned_cols=90  Identities=10%  Similarity=0.097  Sum_probs=66.6

Q ss_pred             CCcEEEEEe--ccCCcceeeecccccccccCCC-CcchhhHHHHhhhhcccccccc--cCCCCceeEeecCCCCChhhhh
Q 043301          140 QDVELRTIQ--ERNPEDLTFHDVFSSFTEKDRN-QLDDITENIESEIAGIKKTLSE--TGDQGSKVTISESYPYSDDTLA  214 (244)
Q Consensus       140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~n-~l~d~~~~~~~~~~~~~~~l~~--~~~~~~~~~i~~~~~~~~~~~~  214 (244)
                      |.+.+.+..  ..+.|.++|-+|. +|.++|.+ |.+|||+++.         +.+  ...++|++.-.+.+|.|||   
T Consensus         9 G~l~~~l~y~~~~~~L~v~v~~a~-~L~~~d~~~~~~dpyv~v~---------~~~~~~~~~kT~v~~~t~nP~wne---   75 (138)
T 1ugk_A            9 GTLFFSLEYNFERKAFVVNIKEAR-GLPAMDEQSMTSDPYIKMT---------ILPEKKHKVKTRVLRKTLDPAFDE---   75 (138)
T ss_dssp             CEEEEEEEEEGGGTEEEEEEEEEE-SCCCCBTTTTBCEEEEEEE---------EETTTCSEEECCCCSSCSSCEEEE---
T ss_pred             EEEEEEEEEECCCCEEEEEEEEee-CCCCCCCCCCCCCCEEEEE---------EecCCCceEecCcCcCCCCCcEee---
Confidence            556665544  4667889999997 58999996 9999998743         332  2455666444577888887   


Q ss_pred             hhhhh-cCCCC-ccceeEEEEeccCccccc
Q 043301          215 QFILR-LQNSL-RSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       215 ~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~  242 (244)
                      +|.|. +..++ .++.|.|+|||||+.++|
T Consensus        76 ~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~  105 (138)
T 1ugk_A           76 TFTFYGIPYTQIQELALHFTILSFDRFSRD  105 (138)
T ss_dssp             EEEEECCCSTTGGGCEEEEEEEEECSSCCC
T ss_pred             EEEEcCcCHHHhccCEEEEEEEECCCCCCC
Confidence            69995 76655 468999999999998776

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=98.90  E-value=1.4e-10  Score=93.27  Aligned_cols=90  Identities=14%  Similarity=0.127  Sum_probs=65.9

Q ss_pred             CCcEEEEEe--ccCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc--CCCCceeEeecCCCCChhhhhh
Q 043301          140 QDVELRTIQ--ERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET--GDQGSKVTISESYPYSDDTLAQ  215 (244)
Q Consensus       140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~--~~~~~~~~i~~~~~~~~~~~~~  215 (244)
                      |.+.+...-  ....|.++|-+|. +|.++|.+|.+|||+++.         +.+.  ...+|++.-.+.+|.|||   +
T Consensus        29 G~l~~~l~y~~~~~~L~V~v~~a~-~L~~~d~~g~~dpyv~v~---------~~~~~~~~~kT~v~~~t~nP~wne---~   95 (152)
T 1rsy_A           29 GKLQYSLDYDFQNNQLLVGIIQAA-ELPALDMGGTSDPYVKVF---------LLPDKKKKFETKVHRKTLNPVFNE---Q   95 (152)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEE-SCCCCSTTSCCCEEEEEE---------EETTCCSCEECCCCTTCSSCEEEE---E
T ss_pred             eEEEEEEEEeCCCCEEEEEEEEeE-CCCCccCCCCcCeEEEEE---------EEcCCCceEeccccCCCCCCcCcc---c
Confidence            555555543  3567889999997 589999999999998743         3222  344566334467788887   6


Q ss_pred             hhhhcCCCC-ccceeEEEEeccCccccc
Q 043301          216 FILRLQNSL-RSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       216 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~  242 (244)
                      |.|.+...+ .++.|.|+|||||+.+++
T Consensus        96 f~f~v~~~~l~~~~L~i~V~d~d~~~~~  123 (152)
T 1rsy_A           96 FTFKVPYSELGGKTLVMAVYDFDRFSKH  123 (152)
T ss_dssp             EEECCCHHHHTTCEEEEEEEECCSSSCC
T ss_pred             EEEeecHHHcCCCEEEEEEEECCCCCCC
Confidence            999987665 368999999999998765

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=98.89  E-value=2.5e-10  Score=89.31  Aligned_cols=90  Identities=12%  Similarity=0.104  Sum_probs=66.1

Q ss_pred             CCcEEEEEe--ccCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhh
Q 043301          140 QDVELRTIQ--ERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTL  213 (244)
Q Consensus       140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~  213 (244)
                      |.+.+....  ..+.+.++|-+|. +|.++|.+|.+|||+++.         +.+.    .+++|++.-.+.+|.|||  
T Consensus         3 G~l~~sl~y~~~~~~L~v~v~~a~-~L~~~d~~g~~dpyv~v~---------~~~~~~~~~~~kT~~~~~t~nP~wne--   70 (138)
T 3n5a_A            3 GELLLSLCYNPSANSIIVNIIKAR-NLKAMDIGGTSDPYVKVW---------LMYKDKRVEKKKTVTKKRNLNPIFNE--   70 (138)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEE-SCCCCBTTTBCCEEEEEE---------EEETTEEEEEEECCCCSSCSSCEEEE--
T ss_pred             cEEEEEEEEcCCCCeEEEEEEEee-CCCCcCCCCCcCeEEEEE---------EEeCCCccceEeCccccCCCCCcCcc--
Confidence            555555544  3566789999997 589999999999998743         3322    345566344467788887  


Q ss_pred             hhhhhhcCCCC-ccceeEEEEeccCccccc
Q 043301          214 AQFILRLQNSL-RSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       214 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  242 (244)
                       +|.|.+..++ .++.|.|+|||+|+.+++
T Consensus        71 -~f~f~v~~~~l~~~~l~~~V~d~~~~~~~   99 (138)
T 3n5a_A           71 -SFAFDIPTEKLRETTIIITVMDKDKLSRN   99 (138)
T ss_dssp             -EEEEECCGGGGGGEEEEEEEEECCSSSCC
T ss_pred             -eEEEECChhhcCceEEEEEEEECCCCCCC
Confidence             7999988776 467899999999998765

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=98.89  E-value=7.1e-11  Score=97.08  Aligned_cols=77  Identities=6%  Similarity=0.107  Sum_probs=56.5

Q ss_pred             cCCcceeeecccccccccCC----------CCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhh
Q 043301          150 RNPEDLTFHDVFSSFTEKDR----------NQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILR  219 (244)
Q Consensus       150 ~~~~~~~v~~~~~~~~~~~~----------n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  219 (244)
                      .+.|.++|-+|. +|.+||.          +|.+|||++++         |......+|++.-.++||.|||   +|.|.
T Consensus        28 ~g~L~V~VieA~-~L~~~D~~~~~~~f~~~~g~sDPYv~v~---------l~~~~~~kT~v~~ktlnP~WNE---~F~f~   94 (157)
T 2fk9_A           28 NGYLRVRIGEAV-GLQPTRWSLRHSLFKKGHQLLDPYLTVS---------VDQVRVGQTSTKQKTNKPTYNE---EFCAN   94 (157)
T ss_dssp             EEEEEEEEEEEE-CCCCCHHHHHTTTSSSSCCCCCEEEEEE---------ETTEEEEECCCCSSCSSCEEEE---EEEEE
T ss_pred             ccEEEEEEEEEE-CCCCccccccccccccCCCCCCeEEEEE---------ECCEeeEEeeecCCCCCCccCc---EEEEE
Confidence            456779999997 5899993          48899998844         3333223556333467788887   69998


Q ss_pred             cCCCCccceeEEEEeccCccccc
Q 043301          220 LQNSLRSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~  242 (244)
                      +..   .+.|.|+|||||+.+++
T Consensus        95 v~~---~~~L~~~V~D~d~~~~d  114 (157)
T 2fk9_A           95 VTD---GGHLELAVFHETPLGYD  114 (157)
T ss_dssp             EEE---ECEEEEEEEECCSSSSC
T ss_pred             cCC---CCEEEEEEEECCCCCCC
Confidence            854   46899999999998765

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=98.89  E-value=1.3e-10  Score=91.99  Aligned_cols=90  Identities=14%  Similarity=0.145  Sum_probs=67.0

Q ss_pred             CCcEEEEEe--ccCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccc----cCCCCceeEeecCCCCChhhh
Q 043301          140 QDVELRTIQ--ERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE----TGDQGSKVTISESYPYSDDTL  213 (244)
Q Consensus       140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~----~~~~~~~~~i~~~~~~~~~~~  213 (244)
                      |.+.+...-  ..+.|.++|-+|. +|.++|.+|.+|||+++.         +.+    ...++|++.-.+.+|.|||  
T Consensus        16 G~l~~~l~y~~~~~~L~V~v~~a~-~L~~~d~~g~~dpyv~v~---------~~~~~~~~~~~kT~v~~~t~nP~wne--   83 (142)
T 2chd_A           16 GALEFSLLYDQDNSNLQCTIIRAK-GLKPMDSNGLADPYVKLH---------LLPGASKSNKLRTKTLRNTRNPVWNE--   83 (142)
T ss_dssp             CEEEEEEEEEGGGTEEEEEEEEEE-SCCCCCTTSCCCEEEEEE---------EESCCSGGGEEECCCCCSCSSCEEEE--
T ss_pred             ceEEEEEEEeCCCCEEEEEEEEec-CCCCCCCCCCCCCEEEEE---------EEcCCCCcceeeCCcCCCCCCCcCcC--
Confidence            555555544  4667889999997 589999999999998744         332    2455666444577888887  


Q ss_pred             hhhhhh-cCCCCc-cceeEEEEeccCccccc
Q 043301          214 AQFILR-LQNSLR-SKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       214 ~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~  242 (244)
                       +|.|. +..++. .+.|.|+|||||+.+++
T Consensus        84 -~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d  113 (142)
T 2chd_A           84 -TLQYHGITEEDMQRKTLRISVCDEDKFGHN  113 (142)
T ss_dssp             -EEEEESCCHHHHHHCEEEEEEEEECTTSCE
T ss_pred             -EEEEcccCHHHccCCEEEEEEEECCCCCCC
Confidence             69998 666655 47899999999998764

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=98.88  E-value=1.6e-10  Score=91.59  Aligned_cols=90  Identities=14%  Similarity=0.127  Sum_probs=66.7

Q ss_pred             CCcEEEEEe--ccCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccc--cCCCCceeEeecCCCCChhhhhh
Q 043301          140 QDVELRTIQ--ERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE--TGDQGSKVTISESYPYSDDTLAQ  215 (244)
Q Consensus       140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~--~~~~~~~~~i~~~~~~~~~~~~~  215 (244)
                      |.+.+....  ..+.+.++|-+|. +|.++|.+|.+|||+++.         |.+  ....+|++.-.+.+|.|||   +
T Consensus        21 G~l~~~l~y~~~~~~L~v~v~~a~-~L~~~d~~g~~dpyv~v~---------l~~~~~~~~kT~v~~~t~nP~wne---~   87 (143)
T 3f04_A           21 GKLQYSLDYDFQNNQLLVGIIQAA-ELPALDMGGTSDPYVKVF---------LLPDKKKKFETKVHRKTLNPVFNE---Q   87 (143)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEE-CCCCBGGGBCCCEEEEEE---------EESCCSCCEECCCCCSCSSCEEEE---E
T ss_pred             EEEEEEEEEeCCCCEEEEEEEEec-CCCCCCCCCCcCcEEEEE---------EECCCCccEECccCcCCCCCcCcC---e
Confidence            555555544  4667889999997 589999999999998743         322  2345566444467788887   6


Q ss_pred             hhhhcCCCC-ccceeEEEEeccCccccc
Q 043301          216 FILRLQNSL-RSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       216 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~  242 (244)
                      |.|.+...+ .++.|.|+|||||+.++|
T Consensus        88 f~f~v~~~~l~~~~L~i~V~d~d~~~~~  115 (143)
T 3f04_A           88 FTFKVPYSELGGKTLVMAVYDFDRFSKH  115 (143)
T ss_dssp             EEECCCHHHHTTCEEEEEEEECCSSSCC
T ss_pred             EEEeecHhhcCCCEEEEEEEeCCCCCCC
Confidence            999987765 468999999999998765

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=98.88  E-value=3.3e-10  Score=93.20  Aligned_cols=88  Identities=13%  Similarity=0.195  Sum_probs=66.2

Q ss_pred             CCcEEEEEeccCCcceeeecccccccccCC-CCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhhh
Q 043301          140 QDVELRTIQERNPEDLTFHDVFSSFTEKDR-NQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTLA  214 (244)
Q Consensus       140 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~  214 (244)
                      |.+.+.+....+.+.++|-+|. +|.++|. +|.+|||+++.         +.+.    ..++|++.-.+.+|.|||   
T Consensus        19 G~l~~~l~y~~~~L~V~v~~a~-~L~~~d~~~g~~DPyv~v~---------l~~~~~~~~~~kT~v~~~t~nP~wne---   85 (171)
T 2q3x_A           19 GDIQIGMEDKKGQLEVEVIRAR-SLTQKPGSKSTPAPYVKVY---------LLENGACIAKKKTRIARKTLDPLYQQ---   85 (171)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEE-SCCCCC---CCCEEEEEEE---------EEETTEEEEEEECCCCCSCSSCEEEE---
T ss_pred             cEEEEEEEECCCEEEEEEEEee-CCCCCCcCCCCCCceEEEE---------EECCCccccceeCccCCCCCCCCCCc---
Confidence            6777777667788999999998 5899996 79999998743         3322    255666444467788887   


Q ss_pred             hhhhhcCCCCccceeEEEEe-ccCccccc
Q 043301          215 QFILRLQNSLRSKNMSVEFW-DLDDVLVN  242 (244)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  242 (244)
                      +|.|.+.+.  +..|.|+|| |||+.++|
T Consensus        86 ~f~f~v~~~--~~~L~~~V~~d~d~~~~d  112 (171)
T 2q3x_A           86 SLVFDESPQ--GKVLQVIVWGDYGRMDHK  112 (171)
T ss_dssp             EEECSSCCT--TEEEEEEEEEECSTTCSS
T ss_pred             EEEEEecCC--CCEEEEEEEEcCCCCCCC
Confidence            699998654  689999999 99998775

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=2.2e-10  Score=90.70  Aligned_cols=87  Identities=15%  Similarity=0.163  Sum_probs=64.7

Q ss_pred             CCcEEEEEec--cCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhh
Q 043301          140 QDVELRTIQE--RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTL  213 (244)
Q Consensus       140 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~  213 (244)
                      |.+++.+...  .+.|.+.|-+|. +|.++|.+| +|||+++.         |.+.    .+++|++.-.+.+|.|||  
T Consensus        11 G~l~~~l~y~~~~~~L~v~v~~a~-~L~~~d~~g-~dpyv~v~---------l~~~~~~~~~~kT~v~~~t~nP~wne--   77 (142)
T 2dmg_A           11 GQIQLTIRHSSQRNKLIVVVHACR-NLIAFSEDG-SDPYVRMY---------LLPDKRRSGRRKTHVSKKTLNPVFDQ--   77 (142)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEE-CCCCSSTTC-CCEEEEEE---------EESCCCSSSCEECCCCCSCSSCEEEE--
T ss_pred             ceEEEEEEEeCCCCEEEEEEEEeE-CCCCCCCCC-CCeeEEEE---------EEcCCCCCCcccCCccCCCCCCCcCc--
Confidence            6666665544  667889999997 589999999 99998743         3222    345666444577888887  


Q ss_pred             hhhhhhcCCCCc-cceeEEEEeccCccc
Q 043301          214 AQFILRLQNSLR-SKNMSVEFWDLDDVL  240 (244)
Q Consensus       214 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~  240 (244)
                       +|.|.+...+. ++.|.|+|||||+..
T Consensus        78 -~f~f~v~~~~l~~~~L~i~V~d~d~~~  104 (142)
T 2dmg_A           78 -SFDFSVSLPEVQRRTLDVAVKNSGGFL  104 (142)
T ss_dssp             -EEEECCCHHHHHHCEEEEEEEECCCSS
T ss_pred             -eEEEEecHHHhCcCEEEEEEEECCCcc
Confidence             69999877654 469999999999864

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=98.87  E-value=4e-10  Score=91.04  Aligned_cols=90  Identities=14%  Similarity=0.181  Sum_probs=66.9

Q ss_pred             CCcEEEEEe--ccCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhh
Q 043301          140 QDVELRTIQ--ERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTL  213 (244)
Q Consensus       140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~  213 (244)
                      |.+.+.+.-  ..+.+.++|-+|. +|.++|.+|.+|||+++.         +.+.    ...+|++.-.+.+|.|||  
T Consensus        12 G~l~~~l~y~~~~~~L~V~v~~a~-~L~~~d~~g~~dpyv~v~---------l~~~~~~~~~~kT~v~~~t~nP~wne--   79 (159)
T 1tjx_A           12 GDICFSLRYVPTAGKLTVVILEAK-NLKKMDVGGLSDPYVKIH---------LMQNGKRLKKKKTTIKKNTLNPYYNE--   79 (159)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEE-SCCCCSTTSCCCEEEEEE---------EEETTEEEEEEECCCCCSCSSCEEEE--
T ss_pred             CeEEEEEEEcCCCCEEEEEEEEee-CCCCccCCCCCCeEEEEE---------EEeCCceeceeeCceecCCCCCcccc--
Confidence            666666544  4567889999998 589999999999998744         3221    244566444467788887  


Q ss_pred             hhhhhhcCCCCc-cceeEEEEeccCccccc
Q 043301          214 AQFILRLQNSLR-SKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       214 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  242 (244)
                       +|.|.+...+. ++.|.|+|||||+.+++
T Consensus        80 -~f~f~v~~~~l~~~~l~i~V~d~d~~~~~  108 (159)
T 1tjx_A           80 -SFSFEVPFEQIQKVQVVVTVLDYDKIGKN  108 (159)
T ss_dssp             -EEEEECCGGGGGGCEEEEEEEECCSSSCC
T ss_pred             -eEEEEcCHHHhCCcEEEEEEEECCCCCCC
Confidence             79999977664 57899999999998765

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=3.4e-10  Score=90.23  Aligned_cols=90  Identities=9%  Similarity=0.084  Sum_probs=65.4

Q ss_pred             CCcEEEEEe--ccCCcceeeecccccccc-cCCCC------cchhhHHHHhhhhccccccccc--CCCCceeEeecCCCC
Q 043301          140 QDVELRTIQ--ERNPEDLTFHDVFSSFTE-KDRNQ------LDDITENIESEIAGIKKTLSET--GDQGSKVTISESYPY  208 (244)
Q Consensus       140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~-~~~n~------l~d~~~~~~~~~~~~~~~l~~~--~~~~~~~~i~~~~~~  208 (244)
                      |.+++...-  ..+.|.++|-+|.+ |.+ ||.||      .+|||+++.         |.+.  ..++|++.-.+.+|.
T Consensus        13 G~l~~~l~y~~~~~~L~V~v~~a~~-L~~~~d~~g~~~~~~~~dpyv~v~---------l~~~~~~~~kT~v~~~t~nP~   82 (147)
T 2enp_A           13 GMLHFSTQYDLLHNHLTVRVIEARD-LPPPISHDGSRQDMAHSNPYVKIC---------LLPDQKNSKQTGVKRKTQKPV   82 (147)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEEC-CCCSCSSCCSSCTTCCCCCEEEEE---------EETCCSSCEECCCCCSCSSCC
T ss_pred             eEEEEEEEEcCCCCEEEEEEEEEeC-CCCccccccccccCCCCCcEEEEE---------EEeCCCcceEeecccCCCCCe
Confidence            555555543  35668899999985 666 78886      799998743         3332  345666444577898


Q ss_pred             ChhhhhhhhhhcCCCC-ccceeEEEEeccCccccc
Q 043301          209 SDDTLAQFILRLQNSL-RSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       209 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  242 (244)
                      |||   +|.|.+...+ .++.|.|+|||||+.+++
T Consensus        83 wne---~f~f~v~~~~l~~~~L~~~V~d~d~~~~~  114 (147)
T 2enp_A           83 FEE---RYTFEIPFLEAQRRTLLLTVVDFDKFSRH  114 (147)
T ss_dssp             CCB---CCEECCCHHHHHHSEEEEEEECCSTTCCS
T ss_pred             Eee---eEEEEeChHHhccCEEEEEEEECCCCcCC
Confidence            987   6999988765 457999999999998775

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=98.85  E-value=4.6e-10  Score=87.14  Aligned_cols=93  Identities=12%  Similarity=0.168  Sum_probs=60.6

Q ss_pred             CCcEEEEEec--cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhh
Q 043301          140 QDVELRTIQE--RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFI  217 (244)
Q Consensus       140 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~  217 (244)
                      |.+.+.+.-.  .+.+.++|-+|. +|.++|.+|.+|||+++.-     ...-.....++|++.-.+.+|.|||   +|.
T Consensus         5 G~l~~~l~y~~~~~~L~v~v~~a~-~L~~~d~~~~~dpyv~v~~-----~~~~~~~~~~kT~v~~~t~nP~wne---~f~   75 (129)
T 2bwq_A            5 GQLSIKLWFDKVGHQLIVTILGAK-DLPSREDGRPRNPYVKIYF-----LPDRSDKNKRRTKTVKKTLEPKWNQ---TFI   75 (129)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEE-SCCCCTTSCCBCEEEEEEE-----ESSCSGGGEEECCCCSSBSSCEEEE---EEE
T ss_pred             EEEEEEEEEccCCCEEEEEEEEee-CCCCCCCCCCCCCEEEEEE-----ecCCCCCcceecccccCCCCCcccc---EEE
Confidence            5555555443  456789999997 4899999999999987441     0000112345666444467788887   699


Q ss_pred             hhc-CCC-CccceeEEEEeccCcccc
Q 043301          218 LRL-QNS-LRSKNMSVEFWDLDDVLV  241 (244)
Q Consensus       218 ~~~-~~~-~~~~~~~~~~~~~~~~~~  241 (244)
                      |.+ .++ ..+..|.|+|||||+.++
T Consensus        76 f~~~~~~~~~~~~l~~~V~d~d~~~~  101 (129)
T 2bwq_A           76 YSPVHRREFRERMLEITLWDQARVRE  101 (129)
T ss_dssp             ECSCCGGGGGGCEEEEEEEEC-----
T ss_pred             EccCCHHHhcCCeEEEEEEECCcCcC
Confidence            995 433 367899999999999874

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=98.81  E-value=4.2e-10  Score=88.10  Aligned_cols=75  Identities=13%  Similarity=0.159  Sum_probs=55.7

Q ss_pred             CcceeeecccccccccCCCCcchhhHHHHhhhhcccccccc-cCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeE
Q 043301          152 PEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE-TGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMS  230 (244)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (244)
                      .|.++|-+|. +|.++|.+|.+|||+++.         +.+ ...++|++.-.+++|.|||   +|.|.+.+.+   .|.
T Consensus         6 ~L~V~v~~a~-~L~~~d~~g~sDpyv~v~---------~~~~~~~~kT~v~~~t~nP~wne---~f~f~v~~~~---~l~   69 (132)
T 3pyc_A            6 KIRLTVLCAK-NLAKKDFFRLPDPFAKIV---------VDGSGQCHSTDTVKNTLDPKWNQ---HYDLYVGKTD---SIT   69 (132)
T ss_dssp             EEEEEEEEEE-SCCCCSTTCCCCEEEEEE---------ETTTCCEEECCCCSSCSSCEEEE---EEEEEEETTC---CEE
T ss_pred             EEEEEEEEeE-CCCCCCCCCCcCeEEEEE---------ECCCCceEECCccCCCCCCCccC---EEEEEeCCCC---EEE
Confidence            3558899997 589999999999998743         322 2345566343467788887   6999887654   399


Q ss_pred             EEEeccCccccc
Q 043301          231 VEFWDLDDVLVN  242 (244)
Q Consensus       231 ~~~~~~~~~~~~  242 (244)
                      |+|||||..++|
T Consensus        70 ~~v~d~d~~~~~   81 (132)
T 3pyc_A           70 ISVWNHKKIHKK   81 (132)
T ss_dssp             EEEEEGGGTTSS
T ss_pred             EEEEECCCCCCC
Confidence            999999998753

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=98.70  E-value=4.4e-10  Score=88.66  Aligned_cols=75  Identities=8%  Similarity=0.104  Sum_probs=52.8

Q ss_pred             CcceeeecccccccccCCCCc-----------chhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhc
Q 043301          152 PEDLTFHDVFSSFTEKDRNQL-----------DDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRL  220 (244)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~n~l-----------~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  220 (244)
                      .|.++|.+|. +|.++|.+|.           +|||+++.         +......+|+..-.+.+|.|||   +|.|.+
T Consensus         7 ~L~v~v~~a~-~L~~~d~~~~~~~g~~~~~~~~DPyv~v~---------l~~~~~~~T~~~~~t~nP~WnE---~f~f~v   73 (136)
T 1gmi_A            7 LLKIKICEAV-SLKPTAWSLRDAVGPRPQTFLLDPYIALN---------VDDSRIGQTATKQKTNSPAWHD---EFVTDV   73 (136)
T ss_dssp             EEEEEEEEEE-SCCCCHHHHCC-CCSSCCCCCCCEEEEEE---------ETTEEEEECCCCSSCSSCEEEE---EEEEEE
T ss_pred             EEEEEEEeCc-CCCCcccccccccccccCCcCcCcEEEEE---------ECCeEeeeeeEECCCcCCccCC---EEEEEe
Confidence            4568899997 4889986544           99998854         2222112333223366788887   699998


Q ss_pred             CCCCccceeEEEEeccCccccc
Q 043301          221 QNSLRSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~  242 (244)
                      ...   +.|.|+|||||+.+++
T Consensus        74 ~~~---~~L~~~V~d~d~~~~d   92 (136)
T 1gmi_A           74 CNG---RKIELAVFHDAPIGYD   92 (136)
T ss_dssp             EEE---CEEEEEEEECCSSSSC
T ss_pred             cCC---CEEEEEEEeCCCCCCC
Confidence            654   8899999999987765

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=98.70  E-value=2e-09  Score=86.18  Aligned_cols=75  Identities=12%  Similarity=0.167  Sum_probs=50.8

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhccccccccc-----CCCCceeEeecCCCCChhhhhhhhhhcCCCCccc
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET-----GDQGSKVTISESYPYSDDTLAQFILRLQNSLRSK  227 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  227 (244)
                      |.++|-+|. +|.++|.+|.+|||+++.         +.+.     ..++|++.-.+.+|.|||   +|.|.+.+.  +.
T Consensus        22 L~V~v~~a~-~L~~~d~~g~~dpyv~v~---------~~~~~~~~~~~~kT~v~~~t~nP~wne---~f~f~v~~~--~~   86 (153)
T 3b7y_A           22 VRVRVIAGI-GLAKKDILGASDPYVRVT---------LYDPMNGVLTSVQTKTIKKSLNPKWNE---EILFRVHPQ--QH   86 (153)
T ss_dssp             EEEEEEEEE-SCC-------CCEEEEEE---------EEETTTEEEEEEECCCCSSCSSCCCCE---EEEEEECTT--TC
T ss_pred             EEEEEEEee-CCCCCCCCCCCCcEEEEE---------EECCCCccceeeeCccccCCCCCCCCC---EEEEEecCC--CC
Confidence            448899997 489999999999998744         3221     345666444577888987   699998764  57


Q ss_pred             eeEEEEeccCccccc
Q 043301          228 NMSVEFWDLDDVLVN  242 (244)
Q Consensus       228 ~~~~~~~~~~~~~~~  242 (244)
                      .|.|+|||||+.+++
T Consensus        87 ~l~~~V~d~d~~~~d  101 (153)
T 3b7y_A           87 RLLFEVFDENRLTRD  101 (153)
T ss_dssp             EEEEEEEECCSSSCC
T ss_pred             EEEEEEEECCCCcCC
Confidence            899999999998765

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=98.70  E-value=2e-09  Score=84.30  Aligned_cols=74  Identities=12%  Similarity=0.093  Sum_probs=56.2

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE  232 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (244)
                      +.++|-+|. +|.++|.+|.+|||+++.         +.++ +++|++.-.+.+|.|||   +|.|.+..  .+..|.|+
T Consensus        15 L~v~v~~a~-~L~~~d~~g~~dpyv~v~---------~~~~-~~kT~~~~~t~nP~wne---~f~f~~~~--~~~~l~i~   78 (133)
T 2ep6_A           15 LQVKVLKAA-DLLAADFSGKSDPFCLLE---------LGND-RLQTHTVYKNLNPEWNK---VFTFPIKD--IHDVLEVT   78 (133)
T ss_dssp             EEEEEEEEE-SCCCSSSSSCCCEEEEEE---------ETTE-EEECCCCSSCSSCCCCE---EEEEEESC--TTCEEEEE
T ss_pred             EEEEEEeeE-CCCCCCCCCCcCeEEEEE---------ECCE-EEEeeeecCCCCCcccc---EEEEEecC--CCCEEEEE
Confidence            448899997 489999999999998744         2222 34666444577888987   69999874  45789999


Q ss_pred             EeccCccccc
Q 043301          233 FWDLDDVLVN  242 (244)
Q Consensus       233 ~~~~~~~~~~  242 (244)
                      |||||+.+++
T Consensus        79 V~d~d~~~~~   88 (133)
T 2ep6_A           79 VFDEDGDKPP   88 (133)
T ss_dssp             EEEEETTEEE
T ss_pred             EEECCCCCCC
Confidence            9999987653

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.69  E-value=2.4e-09  Score=84.29  Aligned_cols=77  Identities=10%  Similarity=0.068  Sum_probs=58.2

Q ss_pred             CCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCC--Cccce
Q 043301          151 NPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNS--LRSKN  228 (244)
Q Consensus       151 ~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~  228 (244)
                      +.|.++|-+|. +|.++|. |.+|||+++.         +.. .+++|++.-.+.+|.|||   +|.|.+...  +.+..
T Consensus         7 g~L~v~v~~a~-~L~~~~~-g~~dpyv~v~---------~~~-~~~kT~v~~~t~nP~wne---~f~f~v~~~~~~~~~~   71 (140)
T 2dmh_A            7 GMLRVIVESAS-NIPKTKF-GKPDPIVSVI---------FKD-EKKKTKKVDNELNPVWNE---ILEFDLRGIPLDFSSS   71 (140)
T ss_dssp             CEEEEEEEEEE-SCCCCSS-SCCCEEEEEE---------CSS-CEEECCCCCSCSSCEEEE---EEEEECSSCCCCTTCE
T ss_pred             cEEEEEEEEee-CCCCCCC-CCCCeEEEEE---------ECC-EeEEeeeecCCCCCccCc---EEEEEecccccCCCCE
Confidence            34568899997 4899998 9999998744         222 246666444456788877   799999764  46799


Q ss_pred             eEEEEeccCccccc
Q 043301          229 MSVEFWDLDDVLVN  242 (244)
Q Consensus       229 ~~~~~~~~~~~~~~  242 (244)
                      |.|+|||||+.+++
T Consensus        72 l~i~V~d~d~~~~~   85 (140)
T 2dmh_A           72 LGIIVKDFETIGQN   85 (140)
T ss_dssp             EEEEEEETTCSSSC
T ss_pred             EEEEEEECCCCCCC
Confidence            99999999998765

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=98.67  E-value=3.7e-09  Score=92.55  Aligned_cols=90  Identities=14%  Similarity=0.129  Sum_probs=66.3

Q ss_pred             CCcEEEEEe--ccCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc--CCCCceeEeecCCCCChhhhhh
Q 043301          140 QDVELRTIQ--ERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET--GDQGSKVTISESYPYSDDTLAQ  215 (244)
Q Consensus       140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~--~~~~~~~~i~~~~~~~~~~~~~  215 (244)
                      |++++...-  ..+.|.++|-+|. +|.++|.+|.+|||+++         .+.+.  ...+|++.-.+.+|.|||   +
T Consensus         6 G~l~~~l~y~~~~~~L~v~v~~a~-~L~~~d~~~~~dpyv~v---------~~~~~~~~~~~T~~~~~~~nP~wne---~   72 (284)
T 2r83_A            6 GKLQYSLDYDFQNNQLLVGIIQAA-ELPALDMGGTSDPYVKV---------FLLPDKKKKFETKVHRKTLNPVFNE---Q   72 (284)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEE-CCCCCSSSSSCCEEEEE---------EEETCTTSCEECCCCCSCSSCEEEE---E
T ss_pred             eEEEEEEEEECCCCEEEEEEEEee-CCCCCCCCCCCCeEEEE---------EEEcCCCceEeCCcccCCCCCeeCc---e
Confidence            555555544  4566789999997 48999999999999874         33332  234566333466788877   7


Q ss_pred             hhhhcCCCCc-cceeEEEEeccCccccc
Q 043301          216 FILRLQNSLR-SKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       216 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~  242 (244)
                      |.|.+..++. .+.|.|+|||+|+.++|
T Consensus        73 f~f~v~~~~~~~~~l~~~V~d~d~~~~~  100 (284)
T 2r83_A           73 FTFKVPYSELAGKTLVMAVYDFDRFSKH  100 (284)
T ss_dssp             EEECCCGGGCTTCEEEEEEEECCSSSCC
T ss_pred             EEEEechHHhCcCEEEEEEEECCCCCCC
Confidence            9999987764 68999999999988765

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=98.66  E-value=2.5e-09  Score=83.80  Aligned_cols=75  Identities=15%  Similarity=0.168  Sum_probs=57.4

Q ss_pred             CcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEe-ecCCCCChhhhhhhhhhcCCCCccceeE
Q 043301          152 PEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTI-SESYPYSDDTLAQFILRLQNSLRSKNMS  230 (244)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (244)
                      .|.++|-+|. +|.++|.+|.+|||++++         +.++ +.+|+++. .+.+|.|||   +|.|.+..  ....|.
T Consensus        11 ~L~v~v~~a~-~L~~~d~~g~~dpyv~v~---------~~~~-~~kT~~~~~~~~nP~Wne---~f~f~v~~--~~~~l~   74 (136)
T 1wfj_A           11 TLEVVLVSAK-GLEDADFLNNMDPYVQLT---------CRTQ-DQKSNVAEGMGTTPEWNE---TFIFTVSE--GTTELK   74 (136)
T ss_dssp             EEEEEEEEEE-ECSSCCSSCSSCCCEEEE---------SSSC-EEECCCCTTCCSSCEEEE---EEEEEEES--SCCEEE
T ss_pred             EEEEEEEecc-CCCCcccCCCcCceEEEE---------ECCc-cceeEeccCCCCCCccCc---EEEEEECC--CCCEEE
Confidence            3558899997 589999999999998744         3322 34566343 477888887   69999885  678999


Q ss_pred             EEEeccCccccc
Q 043301          231 VEFWDLDDVLVN  242 (244)
Q Consensus       231 ~~~~~~~~~~~~  242 (244)
                      |+|||||+.+++
T Consensus        75 ~~V~d~~~~~~d   86 (136)
T 1wfj_A           75 AKIFDKDVGTED   86 (136)
T ss_dssp             EEECCSSSCTTT
T ss_pred             EEEEECCCCCCC
Confidence            999999987764

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=98.60  E-value=8.4e-09  Score=91.48  Aligned_cols=90  Identities=13%  Similarity=0.163  Sum_probs=64.9

Q ss_pred             CCcEEEEEe--ccCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc--CCCCceeEeecCCCCChhhhhh
Q 043301          140 QDVELRTIQ--ERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET--GDQGSKVTISESYPYSDDTLAQ  215 (244)
Q Consensus       140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~--~~~~~~~~i~~~~~~~~~~~~~  215 (244)
                      |.+++...-  ..+.+.++|-+|. +|.++|.+|.+|||+++.         +.+.  ...+|++.-.+++|.|||   +
T Consensus         7 G~l~~~l~y~~~~~~L~v~v~~a~-~L~~~d~~g~~dPyv~v~---------l~~~~~~~~kT~v~~~t~nP~wne---~   73 (296)
T 1dqv_A            7 GRISFALRYLYGSDQLVVRILQAL-DLPAKDSNGFSDPYVKIY---------LLPDRKKKFQTKVHRKTLNPIFNE---T   73 (296)
T ss_dssp             CEEEEEEECCSSSCEEEEEEEEEE-CCCCCSTTSCCCEEEEEE---------CTTSTTSCEECCCCCSCSSCEEEE---E
T ss_pred             eEEEEEEEEeCCCCEEEEEEEEeE-CCCCcCCCCCcCeEEEEE---------EEcCCCeeEeCCccCCCCCCcEee---E
Confidence            455555433  3456779999997 489999999999998743         3232  334566333467788887   7


Q ss_pred             hhhhcCCCC-ccceeEEEEeccCccccc
Q 043301          216 FILRLQNSL-RSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       216 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~  242 (244)
                      |.|.+...+ .++.|.|+|||||+.+++
T Consensus        74 f~f~v~~~~l~~~~L~~~V~d~d~~~~~  101 (296)
T 1dqv_A           74 FQFSVPLAELAQRKLHFSVYDFDRFSRH  101 (296)
T ss_dssp             EEEECCGGGGSSCCCEEEEEECCSSSCC
T ss_pred             EEEEecHHHhcCCEEEEEEEEcCCCCCC
Confidence            999987665 357999999999998765

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=98.59  E-value=7.2e-09  Score=100.27  Aligned_cols=75  Identities=12%  Similarity=0.053  Sum_probs=56.6

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE  232 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (244)
                      |.+.|-+|.+ |.+ |.+|.+|||++++         |..+ +.+|+++-.++||.|||   +|.|.+.....++.|.||
T Consensus       396 L~V~V~~A~~-L~~-D~~g~sDPYV~v~---------l~~~-~~kTkvik~tlNP~Wne---~f~f~~~~~~~~~~L~~~  460 (540)
T 3nsj_A          396 LVVSNFRAEH-LWG-DYTTATDAYLKVF---------FGGQ-EFRTGVVWNNNNPRWTD---KMDFENVLLSTGGPLRVQ  460 (540)
T ss_dssp             EEEEEEEEES-CCC-SSCSCCCEEEEEE---------ETTE-EEECCCBCSCSSCBCCC---CEEEEEEETTTCCCEEEE
T ss_pred             EEEEEEEccC-CCc-ccCCCcCeEEEEE---------ECCE-eeeeeeecCCCCCCCCe---EEEEEEecCCCCCEEEEE
Confidence            3488899975 777 9999999998855         2222 36777444577888887   698886554568899999


Q ss_pred             EeccCccccc
Q 043301          233 FWDLDDVLVN  242 (244)
Q Consensus       233 ~~~~~~~~~~  242 (244)
                      |||||+.++|
T Consensus       461 V~D~D~~~~d  470 (540)
T 3nsj_A          461 VWDADYGWDD  470 (540)
T ss_dssp             EEECCSSSCC
T ss_pred             EEECCCCCCC
Confidence            9999998764

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=98.57  E-value=1e-08  Score=90.88  Aligned_cols=80  Identities=11%  Similarity=0.112  Sum_probs=61.8

Q ss_pred             cCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhhhhhhhhcCCCCc
Q 043301          150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTLAQFILRLQNSLR  225 (244)
Q Consensus       150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  225 (244)
                      .+.+.+.|-+|. +|.+||.+|.+|||+++.         |.+.    .+++|++.-.+.+|.|||   +|.|.+...+.
T Consensus       151 ~~~l~v~v~~a~-~L~~~d~~g~~Dpyv~v~---------l~~~~~~~~~~kT~v~~~t~nP~wne---~f~f~v~~~~l  217 (296)
T 1dqv_A          151 AGLLTVTIIKAS-NLKAMDLTGFSDPYVKAS---------LISEGRRLKKRKTSIKKNTLNPTYNE---ALVFDVAPESV  217 (296)
T ss_dssp             TTEEEEEEEEEE-SCCCCSSSSCCCEEEEEC---------CCTTCCTTSCEECCCCCSCSSCEEEE---CCCCCCCSGGG
T ss_pred             cceeEEEEEEee-cCCccCCCCCCCcEEEEE---------EEeCCcCccceecceecCCCCCeECc---eEEEEcCHHHc
Confidence            566889999997 589999999999998743         3322    344566444577888887   69999988764


Q ss_pred             -cceeEEEEeccCccccc
Q 043301          226 -SKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       226 -~~~~~~~~~~~~~~~~~  242 (244)
                       ++.|.|+|||||+.++|
T Consensus       218 ~~~~L~i~V~d~d~~~~~  235 (296)
T 1dqv_A          218 ENVGLSIAVVDYDCIGHN  235 (296)
T ss_dssp             GSCCCCCEEEECCSSSCC
T ss_pred             cCcEEEEEEEeCCCCCCC
Confidence             56899999999998765

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=98.56  E-value=1.1e-08  Score=89.48  Aligned_cols=90  Identities=14%  Similarity=0.181  Sum_probs=64.9

Q ss_pred             CCcEEEEEe--ccCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhh
Q 043301          140 QDVELRTIQ--ERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTL  213 (244)
Q Consensus       140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~  213 (244)
                      |.+.+....  ..+.+.+.|-+|. +|.++|.+|.+|||+++.         +.+.    .+++|++.-.+.+|.|||  
T Consensus       137 G~i~l~l~~~p~~~~l~v~v~~a~-~L~~~d~~~~~dpyv~v~---------~~~~~~~~~~~kT~v~~~t~nP~wne--  204 (284)
T 2r83_A          137 GDICFSLRYVPTAGKLTVVILEAK-NLKKMDVGGLSDPYVKIH---------LMQNGKRLKKKKTTIKKNTLNPYYNE--  204 (284)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEE-SCCCCSTTSCCCEEEEEE---------EEETTEEEEEEECCCCCSCSSCEEEE--
T ss_pred             ccEEEEEEecCcCCceEEEEEEeE-CCCCcCCCCCcCeEEEEE---------EEeCCcEeeeeccceecCCCCCEEce--
Confidence            444444333  3556789999997 589999999999998844         2221    234566344467888887  


Q ss_pred             hhhhhhcCCCCc-cceeEEEEeccCccccc
Q 043301          214 AQFILRLQNSLR-SKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       214 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  242 (244)
                       +|.|.+...+. ++.|.|+|||||+.++|
T Consensus       205 -~f~f~v~~~~l~~~~l~i~V~d~d~~~~~  233 (284)
T 2r83_A          205 -SFSFEVPFEQIQKVQVVVTVLDYDKIGKN  233 (284)
T ss_dssp             -EEEEECCTTTGGGEEEEEEEEECCSSSCC
T ss_pred             -eEEEeCCHHHhCceEEEEEEEeCCCCCCC
Confidence             69999987765 56899999999997765

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=98.56  E-value=2.9e-09  Score=82.22  Aligned_cols=75  Identities=12%  Similarity=0.132  Sum_probs=54.4

Q ss_pred             Ccceeeeccccccccc---CCCCcchhhHHHHhhhhcccccccc--cCCCCceeEeecCCCCChhhhhhhhhhcCCCCcc
Q 043301          152 PEDLTFHDVFSSFTEK---DRNQLDDITENIESEIAGIKKTLSE--TGDQGSKVTISESYPYSDDTLAQFILRLQNSLRS  226 (244)
Q Consensus       152 ~~~~~v~~~~~~~~~~---~~n~l~d~~~~~~~~~~~~~~~l~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  226 (244)
                      .|.++|-+|.+ |.+|   |.+|.+|||+++.         +.+  ...++|++.-.+.+|.|||   +|.|.+... ..
T Consensus         4 ~L~v~v~~a~~-L~~~~~~d~~g~~dpyv~v~---------~~~~~~~~~kT~v~~~t~nP~wne---~f~f~v~~~-~~   69 (126)
T 1rlw_A            4 KFTVVVLRATK-VTKGAFGDMLDTPDPYVELF---------ISTTPDSRKRTRHFNNDINPVWNE---TFEFILDPN-QE   69 (126)
T ss_dssp             EEEEEEEEEES-CCSCHHHHHHCCCCEEEEEE---------CTTSTTCCEECCCCTTCSSCEEEE---EEEEEECTT-SC
T ss_pred             EEEEEEEeeeC-CCCCCccccCCCCCCEEEEE---------EccCCCceEEccccCCCCCCcccc---eEEEEecCC-CC
Confidence            45688889974 7775   6789999998744         333  2455666344467788887   799998654 36


Q ss_pred             ceeEEEEeccCccc
Q 043301          227 KNMSVEFWDLDDVL  240 (244)
Q Consensus       227 ~~~~~~~~~~~~~~  240 (244)
                      ..|.|+|||||+.+
T Consensus        70 ~~l~i~V~d~d~~~   83 (126)
T 1rlw_A           70 NVLEITLMDANYVM   83 (126)
T ss_dssp             CEEEEEEEECCSSC
T ss_pred             CEEEEEEEECCCCC
Confidence            78999999999864

>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=9.5e-08  Score=70.73  Aligned_cols=61  Identities=23%  Similarity=0.468  Sum_probs=51.4

Q ss_pred             CCCCCCCCcceEeec-CcccccccccCCCCe---eEEcCCccceeccccccCcCccccCccccCCcC
Q 043301           67 IDHPFHCHPLTLSKT-NHHRCDACLDECSGM---AYRCHECCYNLHYHCTALKPSINFKELKCVLHE  129 (244)
Q Consensus        67 i~hp~H~H~L~L~~~-~~~~Cd~Cg~~~~g~---~Y~C~~Cd~~lH~~Ca~~p~~i~~~~~~h~~H~  129 (244)
                      .+.+...|.|...++ .+++|++|++.+.|+   +|+|..|+|++|.+|+...+..  ++..+.+.+
T Consensus        11 ~~~~~~~H~F~~~~~~~pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~~v~~~--C~~~~~e~r   75 (85)
T 2eli_A           11 TDDPRSKHKFKIHTYGSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINVPSL--CGMDHTEKR   75 (85)
T ss_dssp             CCCTTTSCCCEEECCSSCCBCSSSCCBCCCSSSCEEECSSSCCEEETTTTTTSCSC--CCCCCCCCC
T ss_pred             cCCCCCCcccEeeeCCCCcCCcccCccccccccCCCcCCCcCCccCHhHHhhcCCc--CCcchhhCc
Confidence            334444899999887 899999999998874   6999999999999999988766  888888776

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=98.54  E-value=7.6e-09  Score=85.02  Aligned_cols=76  Identities=12%  Similarity=0.143  Sum_probs=51.2

Q ss_pred             CcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc-----CCCCceeEeecCCCCChhhhhhhhhhcCCCCcc
Q 043301          152 PEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET-----GDQGSKVTISESYPYSDDTLAQFILRLQNSLRS  226 (244)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  226 (244)
                      .|.++|-+|. +|.++|.+|.+|||+++.         |...     ..++|++.-.+.+|.|||   +|.|.+.+.  +
T Consensus         9 ~L~V~v~~a~-~L~~~d~~g~~DPyv~v~---------l~~~~~~~~~~~kT~v~~~t~nP~Wne---~f~f~v~~~--~   73 (176)
T 3m7f_B            9 VVRVKVIAGI-GLAKKDILGASDPYVRVT---------LYDPMSGILTSVQTKTIKKSLNPKWNE---EILFRVLPQ--R   73 (176)
T ss_dssp             EEEEEEEEEE-SCC---CCCCCCEEEEEE---------EEETTTEEEEEEECCCCSSCSSCEEEE---EEEEEECTT--T
T ss_pred             EEEEEEEEee-CCCCcCCCCCcCcEEEEE---------EECCCCCcccceeCceECCCCCCcccc---eEEEEEcCC--C
Confidence            3558899997 589999999999998743         3321     234666444477788887   699999854  4


Q ss_pred             ceeEEEEeccCccccc
Q 043301          227 KNMSVEFWDLDDVLVN  242 (244)
Q Consensus       227 ~~~~~~~~~~~~~~~~  242 (244)
                      ..|.|+|||||+.+++
T Consensus        74 ~~L~~~V~d~d~~~~d   89 (176)
T 3m7f_B           74 HRILFEVFDENRLTRD   89 (176)
T ss_dssp             CEEEEEEEECC----C
T ss_pred             CEEEEEEEECCCCCCC
Confidence            7899999999998764

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=98.53  E-value=1.1e-08  Score=81.29  Aligned_cols=73  Identities=19%  Similarity=0.239  Sum_probs=54.9

Q ss_pred             CCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeE
Q 043301          151 NPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMS  230 (244)
Q Consensus       151 ~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (244)
                      +.+.++|-+|. +|.++|.+|.+|||+.+.         +. ....+|++.-.+.+|.|||   +|.|.+...  +..|.
T Consensus        17 ~~L~V~v~~a~-~L~~~d~~g~~dpyv~v~---------~~-~~~~kT~~~~~t~nP~Wne---~f~f~v~~~--~~~l~   80 (148)
T 3kwu_A           17 AKISITVVCAQ-GLQAKDKTGSSDPYVTVQ---------VG-KTKKRTKTIYGNLNPVWEE---NFHFECHNS--SDRIK   80 (148)
T ss_dssp             EEEEEEEEEEE-SCCCCSTTSCCCEEEEEE---------ET-TEEEECCCCCSCSSCEEEE---EEEEEECST--TCEEE
T ss_pred             cEEEEEEEeee-CCCCCCCCCCcCeEEEEE---------EC-CEEEECCccCCCCCCCccc---EEEEEecCC--CCEEE
Confidence            34558999997 589999999999998755         22 1234566334467788887   699988765  37899


Q ss_pred             EEEeccCcc
Q 043301          231 VEFWDLDDV  239 (244)
Q Consensus       231 ~~~~~~~~~  239 (244)
                      |+|||||..
T Consensus        81 ~~v~d~d~~   89 (148)
T 3kwu_A           81 VRVLDEDDD   89 (148)
T ss_dssp             EEEEECCCS
T ss_pred             EEEEECCCC
Confidence            999999985

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=98.47  E-value=1.5e-08  Score=83.85  Aligned_cols=74  Identities=5%  Similarity=0.064  Sum_probs=52.1

Q ss_pred             CCcceeeeccccccc-ccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCcccee
Q 043301          151 NPEDLTFHDVFSSFT-EKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNM  229 (244)
Q Consensus       151 ~~~~~~v~~~~~~~~-~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (244)
                      ..|.++|-+|.+ |. +++..+ +|||+++.         +.. ..++|++.-.+++|.|||   +|.|.+.+   +..|
T Consensus        36 ~~L~V~V~~A~~-L~~~~~~~~-sDPYv~v~---------~~~-~~~kT~v~~~tlnP~Wne---~f~f~v~~---~~~L   97 (173)
T 2nq3_A           36 SQLQITVISAKL-KENKKNWFG-PSPYVEVT---------VDG-QSKKTEKCNNTNSPKWKQ---PLTVIVTP---VSKL   97 (173)
T ss_dssp             EEEEEEEEEEEE-CCCC--CCC-CCEEEEEE---------ETT-EEEECCCCSSCSSCEEEE---EEEEEECT---TCEE
T ss_pred             eEEEEEEEEeEC-CCCcccCCC-CCeEEEEE---------ECC-EEeEccccCCCCCCeECC---EEEEEeCC---CCEE
Confidence            346689999975 66 555555 99998754         222 345566444467788887   69998853   8899


Q ss_pred             EEEEeccCccccc
Q 043301          230 SVEFWDLDDVLVN  242 (244)
Q Consensus       230 ~~~~~~~~~~~~~  242 (244)
                      .|+|||||+.+++
T Consensus        98 ~~~V~D~d~~~~d  110 (173)
T 2nq3_A           98 HFRVWSHQTLKSD  110 (173)
T ss_dssp             EEEEEECCSSSCC
T ss_pred             EEEEEECCCCCCC
Confidence            9999999987665

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=98.46  E-value=1.3e-08  Score=80.40  Aligned_cols=68  Identities=10%  Similarity=0.151  Sum_probs=47.2

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEe-ecCCCCChhhhhhhhhhcCCCCccceeEE
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTI-SESYPYSDDTLAQFILRLQNSLRSKNMSV  231 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (244)
                      |.++|.+|. ++ +  .+|.+|||++++            ..+.+|+++. .+.||.|||   +|.|.+..  .+..|.|
T Consensus         7 L~V~V~~A~-~l-~--~~g~~DPYv~v~------------~~~~kt~~~~~~t~nP~WnE---~f~f~v~~--~~~~L~~   65 (131)
T 2cjt_A            7 LCVGVKKAK-FD-G--AQEKFNTYVTLK------------VQNVKSTTIAVRGSQPSWEQ---DFMFEINR--LDLGLTV   65 (131)
T ss_dssp             EEEEEEEEE-CS-S--CGGGCEEEEEEE------------ETTEEEECCCEESSSCEEEE---EEEEEECC--CSSEEEE
T ss_pred             EEEEEEEeE-CC-C--CCCCcCeEEEEE------------ecCEEEeEecCCCCCceECC---EEEEEEeC--CCCeEEE
Confidence            457888886 34 2  388999998865            1122333222 367888887   69999875  4557999


Q ss_pred             EEeccCccccc
Q 043301          232 EFWDLDDVLVN  242 (244)
Q Consensus       232 ~~~~~~~~~~~  242 (244)
                      +||||| .++|
T Consensus        66 ~V~D~d-~~~d   75 (131)
T 2cjt_A           66 EVWNKG-LIWD   75 (131)
T ss_dssp             EEEECC-SSCE
T ss_pred             EEEECC-CCCC
Confidence            999999 6654

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=98.29  E-value=7.1e-08  Score=79.58  Aligned_cols=68  Identities=10%  Similarity=0.152  Sum_probs=47.2

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEe-ecCCCCChhhhhhhhhhcCCCCccceeEE
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTI-SESYPYSDDTLAQFILRLQNSLRSKNMSV  231 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (244)
                      |.++|.+|. ++ +  .+|.+|||++++            ..+++|+++. .+.||.|||   +|.|.+..  .+..|.|
T Consensus        16 L~V~V~~A~-~l-~--~~g~~DPYV~v~------------~~~~kt~~~~~~t~nP~WnE---~f~f~v~~--~~~~L~~   74 (167)
T 2cjs_A           16 LCVGVKKAK-FD-G--AQEKFNTYVTLK------------VQNVESTTIAVRGSQPSWEQ---DFMFEINR--LDLGLTV   74 (167)
T ss_dssp             EEEEEEEEE-CS-S--CGGGCEEEEEEE------------ETTEEEECCCEESSSCEEEE---EEEEECCC--TTSEEEE
T ss_pred             EEEEEEEEE-CC-C--CCCCCCeEEEEE------------ecceEEEEecCCCCCCCCCC---EEEEEeeC--CCCEEEE
Confidence            447888886 34 3  478999998865            1123344232 367888887   69999874  4567999


Q ss_pred             EEeccCccccc
Q 043301          232 EFWDLDDVLVN  242 (244)
Q Consensus       232 ~~~~~~~~~~~  242 (244)
                      +||||| .+++
T Consensus        75 ~V~D~d-~~~d   84 (167)
T 2cjs_A           75 EVWNKG-LIWD   84 (167)
T ss_dssp             EEEECC-SSCC
T ss_pred             EEEECC-CCCC
Confidence            999999 6554

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=98.19  E-value=1.7e-07  Score=88.44  Aligned_cols=76  Identities=7%  Similarity=0.031  Sum_probs=56.5

Q ss_pred             CcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEE
Q 043301          152 PEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSV  231 (244)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (244)
                      .+.++|-+|. +|.++|.+|.+|||+++.         +.+ ...+|++.-.+.||.|||   +|.|.+... ....|.|
T Consensus       388 ~l~v~v~~a~-~L~~~d~~~~sdpyv~v~---------~~~-~~~~T~~~~~t~nP~w~e---~f~f~~~~~-~~~~l~~  452 (510)
T 3jzy_A          388 RLMVHVIEAT-ELKACKPNGKSNPYCEIS---------MGS-QSYTTRTIQDTLNPKWNF---NCQFFIKDL-YQDVLCL  452 (510)
T ss_dssp             EEEEEEEEEE-SCCCCSTTSCCCEEEEEE---------ETT-EEEECCCCSSCSSCEEEE---EEEEEESCT-TTCEEEE
T ss_pred             eEEEEeceee-cCCCCCCCCCCCeEEEEE---------ECC-eeccCCccCCCCCCccCc---eEEEEecCC-CCCEEEE
Confidence            4568999997 589999999999998754         222 245566434467788887   699988543 4467999


Q ss_pred             EEeccCccccc
Q 043301          232 EFWDLDDVLVN  242 (244)
Q Consensus       232 ~~~~~~~~~~~  242 (244)
                      +|||||+.+++
T Consensus       453 ~v~d~d~~~~~  463 (510)
T 3jzy_A          453 TLFDRDQFSPD  463 (510)
T ss_dssp             EEEECCSSSSC
T ss_pred             EEEeCCCCCCC
Confidence            99999998764

>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}

Probab=98.08  E-value=3.3e-06  Score=59.13  Aligned_cols=49  Identities=18%  Similarity=0.459  Sum_probs=41.9

Q ss_pred             CCcceEeec-CcccccccccCCCCe---eEEcCCccceeccccccCcCccccCcc
Q 043301           73 CHPLTLSKT-NHHRCDACLDECSGM---AYRCHECCYNLHYHCTALKPSINFKEL  123 (244)
Q Consensus        73 ~H~L~L~~~-~~~~Cd~Cg~~~~g~---~Y~C~~Cd~~lH~~Ca~~p~~i~~~~~  123 (244)
                      .|.|...++ .+++|++|++.+.|+   +|+|..|+|++|.+|+...+..  +++
T Consensus        12 ~H~F~~~~~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~v~~~--C~~   64 (65)
T 2enz_A           12 PHRFKVYNYKSPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTKVANL--CGI   64 (65)
T ss_dssp             CCCEEECCCCSCCBCSSSCCBCCCSSSCSEEESSSCCEECTTTTTTSCSC--TTT
T ss_pred             CCccEeEcCCCCcCchhcChhheecCCcccccCCCCCccCHhHHhhCcCc--CCC
Confidence            788888777 899999999998874   6999999999999999887654  554

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=97.95  E-value=8.6e-07  Score=84.34  Aligned_cols=69  Identities=9%  Similarity=0.074  Sum_probs=7.6

Q ss_pred             cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeec---CCCCChhhhhhhhhhcCCCCcc
Q 043301          150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISE---SYPYSDDTLAQFILRLQNSLRS  226 (244)
Q Consensus       150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~  226 (244)
                      .+.|.++|-+|.+ |.+||     |||+++.         ++.....+|++...+   +||.|||   +|.|.+.+.  .
T Consensus        10 ~~~L~V~VieAk~-L~~~d-----dpYv~v~---------l~~~~~~kT~v~~kt~~glnP~WnE---~F~f~~~~~--~   69 (483)
T 3bxj_A           10 DNVLKLWIIEARE-LPPKK-----RYYCELC---------LDDMLYARTTSKPRSASGDTVFWGE---HFEFNNLPA--V   69 (483)
T ss_dssp             EECC------------------------------------------------------------C---CEECC-------
T ss_pred             ccEEEEEEEEcCC-cCCCC-----CCeEEEE---------ECCeEEeeeeEEeCCCCCCCCcccc---EEEEecCCC--c
Confidence            3568899999984 88887     9998854         333323456644445   7888988   699997665  3


Q ss_pred             ceeEEEEec-cCc
Q 043301          227 KNMSVEFWD-LDD  238 (244)
Q Consensus       227 ~~~~~~~~~-~~~  238 (244)
                      ..|.|+||| ||+
T Consensus        70 ~~L~v~V~d~~d~   82 (483)
T 3bxj_A           70 RALRLHLYRDSDK   82 (483)
T ss_dssp             -------------
T ss_pred             cEEEEEEEecCCc
Confidence            899999999 884

>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*

Probab=97.92  E-value=6.1e-06  Score=54.46  Aligned_cols=44  Identities=23%  Similarity=0.524  Sum_probs=36.8

Q ss_pred             CcceEeec-CcccccccccCCCC---eeEEcCCccceeccccccCcCc
Q 043301           74 HPLTLSKT-NHHRCDACLDECSG---MAYRCHECCYNLHYHCTALKPS  117 (244)
Q Consensus        74 H~L~L~~~-~~~~Cd~Cg~~~~g---~~Y~C~~Cd~~lH~~Ca~~p~~  117 (244)
                      |.|...++ .+++|+.|++.+.|   .+|+|..|++++|.+|+...|.
T Consensus         1 H~F~~~~~~~pt~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~v~~   48 (50)
T 1ptq_A            1 HRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVAN   48 (50)
T ss_dssp             CCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTTSCS
T ss_pred             CCCEeecCCCCCCcCCCCceeeccCCccCEeCCCCCeECHHHhhhcCC
Confidence            55666655 78999999999877   4699999999999999987653

>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}

Probab=97.92  E-value=7.4e-06  Score=56.43  Aligned_cols=47  Identities=26%  Similarity=0.440  Sum_probs=40.4

Q ss_pred             CCCCcceE-eec-CcccccccccCCCCeeEEcCCccceeccccccCcCc
Q 043301           71 FHCHPLTL-SKT-NHHRCDACLDECSGMAYRCHECCYNLHYHCTALKPS  117 (244)
Q Consensus        71 ~H~H~L~L-~~~-~~~~Cd~Cg~~~~g~~Y~C~~Cd~~lH~~Ca~~p~~  117 (244)
                      ..+|.|.. .++ .+++|+.||+.+...+|+|..|+|+.|.+|....+.
T Consensus         8 ~~~H~F~~~~~~~~pt~C~~C~~~i~kqg~kC~~C~~~cH~kC~~~v~~   56 (59)
T 1rfh_A            8 GEGHRFVELALRGGPGWCDLCGREVLRQALRCANCKFTCHSECRSLIQL   56 (59)
T ss_dssp             CSSCCCEECCCSSCCEECTTTCSEECSCCEECTTTSCEECHHHHTTCCC
T ss_pred             CCCCcCeeeeccCCCeEchhcchhhhhCccEeCCCCCeEehhhhhhCcC
Confidence            34788888 666 899999999988666899999999999999987754

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=97.91  E-value=1.2e-06  Score=85.92  Aligned_cols=80  Identities=18%  Similarity=0.172  Sum_probs=56.0

Q ss_pred             CcceeeecccccccccC--CCCcchhhHHHHhhhhcccccccccCCCCceeEee-c-CCCCChhhhhhhhhhcCCCCccc
Q 043301          152 PEDLTFHDVFSSFTEKD--RNQLDDITENIESEIAGIKKTLSETGDQGSKVTIS-E-SYPYSDDTLAQFILRLQNSLRSK  227 (244)
Q Consensus       152 ~~~~~v~~~~~~~~~~~--~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~-~-~~~~~~~~~~~~~~~~~~~~~~~  227 (244)
                      .|.++|-+|.+ |.++|  .+|.+|||++++  +.+..   ....+++|+ +|. + .||.|||   +|.|.+...+. .
T Consensus       498 ~L~V~Vi~A~~-L~~~d~~~~~~~DPYV~V~--l~g~~---~d~~~~kTk-vi~~ng~NP~WnE---~f~F~v~~~el-~  566 (624)
T 1djx_A          498 RLRVRIISGQQ-LPKVNKNKNSIVDPKVIVE--IHGVG---RDTGSRQTA-VITNNGFNPRWDM---EFEFEVTVPDL-A  566 (624)
T ss_dssp             EEEEEEEEEES-CCCCSSCSSSCCCEEEEEE--EESSG---GGCEEEECC-CCTTCSSSCEEEE---EEEEEESCGGG-C
T ss_pred             EEEEEEEEcCC-CCcccccccCCCCcEEEEE--EecCC---CCcceeecc-cccCCCCCCccCc---eEEEEEecCCC-C
Confidence            35588999974 78888  589999998854  11100   011345677 444 4 6888887   69998875544 5


Q ss_pred             eeEEEEeccCccccc
Q 043301          228 NMSVEFWDLDDVLVN  242 (244)
Q Consensus       228 ~~~~~~~~~~~~~~~  242 (244)
                      -|.|+|||||+.++|
T Consensus       567 ~L~~~V~D~D~~~~d  581 (624)
T 1djx_A          567 LVRFMVEDYDSSSKN  581 (624)
T ss_dssp             EEEEEEEECCSSSCC
T ss_pred             EEEEEEEEcCCCCCC
Confidence            799999999998765

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=97.90  E-value=7.6e-07  Score=89.10  Aligned_cols=75  Identities=12%  Similarity=0.132  Sum_probs=56.3

Q ss_pred             Ccceeeecccccccc---cCCCCcchhhHHHHhhhhcccccccc--cCCCCceeEeecCCCCChhhhhhhhhhcCCCCcc
Q 043301          152 PEDLTFHDVFSSFTE---KDRNQLDDITENIESEIAGIKKTLSE--TGDQGSKVTISESYPYSDDTLAQFILRLQNSLRS  226 (244)
Q Consensus       152 ~~~~~v~~~~~~~~~---~~~n~l~d~~~~~~~~~~~~~~~l~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  226 (244)
                      .|.++|-+|.+ |.+   +|.+|.+|||+++.         +.+  ..+++|+++-.+.+|.|||   +|.|.+... ..
T Consensus        19 ~L~V~Vi~A~n-L~~~~~~D~~g~sDPYV~V~---------l~~~~~~k~kTkvik~tlNPvWNE---tF~F~v~~~-~~   84 (749)
T 1cjy_A           19 KFTVVVLRATK-VTKGAFGDMLDTPDPYVELF---------ISTTPDSRKRTRHFNNDINPVWNE---TFEFILDPN-QE   84 (749)
T ss_dssp             EEEEEEEEEEC-CCSCHHHHHHCCCCEEEEEE---------CTTSTTCCEECCCCTTCSSCEEEE---EEEEEECTT-SC
T ss_pred             EEEEEEEEEEC-CCCccccCCCCCcCeEEEEE---------EecCCCCeEecceEcCCCCCeeee---EEEEEecCC-CC
Confidence            34588899974 777   99999999998854         332  2456677444477788877   799998764 45


Q ss_pred             ceeEEEEeccCccc
Q 043301          227 KNMSVEFWDLDDVL  240 (244)
Q Consensus       227 ~~~~~~~~~~~~~~  240 (244)
                      ..|.|+|||||+.+
T Consensus        85 ~~L~~~V~D~D~~~   98 (749)
T 1cjy_A           85 NVLEITLMDANYVM   98 (749)
T ss_dssp             CBCEEEEEECCSSS
T ss_pred             CEEEEEEEECCCCC
Confidence            68999999999876

>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A

Probab=97.88  E-value=1.2e-05  Score=53.49  Aligned_cols=44  Identities=20%  Similarity=0.533  Sum_probs=37.2

Q ss_pred             CCcceEeecCcccccccccCCCCeeEEcCCccceeccccccCcCc
Q 043301           73 CHPLTLSKTNHHRCDACLDECSGMAYRCHECCYNLHYHCTALKPS  117 (244)
Q Consensus        73 ~H~L~L~~~~~~~Cd~Cg~~~~g~~Y~C~~Cd~~lH~~Ca~~p~~  117 (244)
                      +|.|+..++..++|+.|++.+. ++|+|.+|+|+.|.+|+..+|+
T Consensus         4 ~HrF~~~t~~~t~C~~C~k~i~-~G~kC~~Ck~~cH~kC~~~vp~   47 (49)
T 1kbe_A            4 THRFSTKSWLSQVCNVCQKSMI-FGVKCKHCRLKCHNKCTKEAPA   47 (49)
T ss_dssp             CCCEEEECCSSCCCSSSCCSSC-CEEEETTTTEEESSSCTTTSCC
T ss_pred             CcccCccCCCCcCccccCceeE-CcCCCCCCCCccchhhcCcCCC
Confidence            5888887775599999999875 4699999999999999987653

>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}

Probab=97.86  E-value=1.4e-05  Score=57.27  Aligned_cols=46  Identities=26%  Similarity=0.487  Sum_probs=40.0

Q ss_pred             CCCcceE-eec-CcccccccccCCCCeeEEcCCccceeccccccCcCc
Q 043301           72 HCHPLTL-SKT-NHHRCDACLDECSGMAYRCHECCYNLHYHCTALKPS  117 (244)
Q Consensus        72 H~H~L~L-~~~-~~~~Cd~Cg~~~~g~~Y~C~~Cd~~lH~~Ca~~p~~  117 (244)
                      .+|.|.. .++ .+++|+.|+..+...+|+|..|+|++|.+|....+.
T Consensus        22 ~~H~F~~~~~~~~pt~C~~C~~~l~~qG~kC~~C~~~cHkkC~~~V~~   69 (72)
T 2fnf_X           22 EGHRFVELALRGGPGWCDLCGREVLRQALRCANCKFTCHSECRSLIQL   69 (72)
T ss_dssp             SSCCCEECCCCSSCCBCTTTSSBCSSCCEECTTSSCEECTGGGGGCCS
T ss_pred             CCCccceeecCCCCcchhhhhHHHHhCcCccCCCCCeechhhhccCcC
Confidence            4788888 666 899999999988666899999999999999988754

>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=97.83  E-value=3.3e-06  Score=62.47  Aligned_cols=41  Identities=24%  Similarity=0.408  Sum_probs=34.8

Q ss_pred             CCCEeeeeccCCCcccccccccccCCCCC-----cEEeCCCCCcccccccc
Q 043301           17 HYLIFNENEVGHDDVVIICDICETSLQGP-----AYGCGTCEFSIHKSCAE   62 (244)
Q Consensus        17 H~L~L~~~~~~~~~~~~~C~~C~~~i~g~-----~Y~C~~C~F~lH~~Ca~   62 (244)
                      |.|.. ..    ...+++|+.|+..|||+     +|+|..|+|.+|++|..
T Consensus        25 H~F~~-~~----~~~PT~Cd~C~~~lWGl~kqp~G~~C~~C~~~~HkrC~~   70 (84)
T 2row_A           25 HEFIP-TL----YHFPTNCEACMKPLWHMFKPPPALECRRCHIKCHKDHMD   70 (84)
T ss_dssp             EEEEE-EC----CSSCEECSSSSSEECCSSSCCCEEEESSSCCEEEHHHHH
T ss_pred             cceEe-Ec----CCCCcchhhcCHhhhccccCCCCCEecCCCCccchhHhC
Confidence            66655 22    46789999999999984     89999999999999997

>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=97.83  E-value=5.7e-06  Score=61.18  Aligned_cols=50  Identities=18%  Similarity=0.270  Sum_probs=41.6

Q ss_pred             CCcceEeec-CcccccccccCCCCe-----eEEcCCccceecccccc---CcCccccCccc
Q 043301           73 CHPLTLSKT-NHHRCDACLDECSGM-----AYRCHECCYNLHYHCTA---LKPSINFKELK  124 (244)
Q Consensus        73 ~H~L~L~~~-~~~~Cd~Cg~~~~g~-----~Y~C~~Cd~~lH~~Ca~---~p~~i~~~~~~  124 (244)
                      .|.|....+ .+++|++|++.+.|+     +|+|..|.|++|.+|..   ..+..  |+++
T Consensus        24 ~H~F~~~~~~~PT~Cd~C~~~lWGl~kqp~G~~C~~C~~~~HkrC~~k~~~v~~~--C~~~   82 (84)
T 2row_A           24 GHEFIPTLYHFPTNCEACMKPLWHMFKPPPALECRRCHIKCHKDHMDKKEEIIAP--CKVY   82 (84)
T ss_dssp             TEEEEEECCSSCEECSSSSSEECCSSSCCCEEEESSSCCEEEHHHHHHTCTTCCC--CSTT
T ss_pred             CcceEeEcCCCCcchhhcCHhhhccccCCCCCEecCCCCccchhHhCCccccccc--cCcC
Confidence            788888877 899999999988775     89999999999999998   45443  5554

>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}

Probab=97.82  E-value=1.8e-05  Score=55.33  Aligned_cols=44  Identities=25%  Similarity=0.536  Sum_probs=36.8

Q ss_pred             CCCCEeeeeccCCCcccccccccccCCCC---CcEEeCCCCCccccccccCC
Q 043301           16 MHYLIFNENEVGHDDVVIICDICETSLQG---PAYGCGTCEFSIHKSCAELP   64 (244)
Q Consensus        16 pH~L~L~~~~~~~~~~~~~C~~C~~~i~g---~~Y~C~~C~F~lH~~Ca~~p   64 (244)
                      +|.++. ..    ...+++|+.|+..|||   .+|+|..|++.+|++|+...
T Consensus        12 ~H~F~~-~~----~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~v   58 (65)
T 2enz_A           12 PHRFKV-YN----YKSPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTKV   58 (65)
T ss_dssp             CCCEEE-CC----CCSCCBCSSSCCBCCCSSSCSEEESSSCCEECTTTTTTS
T ss_pred             CCccEe-Ec----CCCCcCchhcChhheecCCcccccCCCCCccCHhHHhhC
Confidence            388876 22    3568999999999998   48999999999999999863

>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A

Probab=97.82  E-value=1.5e-05  Score=53.04  Aligned_cols=45  Identities=27%  Similarity=0.650  Sum_probs=38.7

Q ss_pred             CCcceEeec-CcccccccccCCCCeeEEcCCccceeccccccCcCcc
Q 043301           73 CHPLTLSKT-NHHRCDACLDECSGMAYRCHECCYNLHYHCTALKPSI  118 (244)
Q Consensus        73 ~H~L~L~~~-~~~~Cd~Cg~~~~g~~Y~C~~Cd~~lH~~Ca~~p~~i  118 (244)
                      .|.|...++ .+++|+.|++.+. .+|+|..|++++|.+|+...+..
T Consensus         3 ~H~F~~~~~~~pt~C~~C~~~l~-qG~~C~~C~~~~H~~C~~~v~~~   48 (52)
T 1faq_A            3 THNFARKTFLKLAFCDICQKFLL-NGFRCQTCGYKFHEHCSTKVPTM   48 (52)
T ss_dssp             CCCCEEECCSSCEECTTSSSEEC-SEEECTTTTCCBCSTTSSSSSSC
T ss_pred             CceeEeEeCCCCcCCCCcccccc-cCCEeCCCCCeEChhHHhhCcCc
Confidence            577877776 8899999999876 78999999999999999877543

>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.80  E-value=2.5e-05  Score=57.55  Aligned_cols=49  Identities=24%  Similarity=0.520  Sum_probs=39.6

Q ss_pred             eCCCCCCCEeeeeccCCCcccccccccccCCCC---CcEEeCCCCCccccccccCCC
Q 043301           12 HTSHMHYLIFNENEVGHDDVVIICDICETSLQG---PAYGCGTCEFSIHKSCAELPL   65 (244)
Q Consensus        12 HpsHpH~L~L~~~~~~~~~~~~~C~~C~~~i~g---~~Y~C~~C~F~lH~~Ca~~p~   65 (244)
                      .+.-+|.|+. ..    ...+++|+.|+..+||   .+|+|..|++.+|++|+...+
T Consensus        13 ~~~~~H~F~~-~~----~~~pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~~v~   64 (85)
T 2eli_A           13 DPRSKHKFKI-HT----YGSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINVP   64 (85)
T ss_dssp             CTTTSCCCEE-EC----CSSCCBCSSSCCBCCCSSSCEEECSSSCCEEETTTTTTSC
T ss_pred             CCCCCcccEe-ee----CCCCcCCcccCccccccccCCCcCCCcCCccCHhHHhhcC
Confidence            4444498887 22    3568999999999998   489999999999999998643

>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*

Probab=97.79  E-value=1.2e-05  Score=53.06  Aligned_cols=36  Identities=28%  Similarity=0.624  Sum_probs=31.9

Q ss_pred             CcccccccccccCCCC---CcEEeCCCCCccccccccCC
Q 043301           29 DDVVIICDICETSLQG---PAYGCGTCEFSIHKSCAELP   64 (244)
Q Consensus        29 ~~~~~~C~~C~~~i~g---~~Y~C~~C~F~lH~~Ca~~p   64 (244)
                      ...+++|+.|+..|||   .+|+|+.|++.+|++|+...
T Consensus         8 ~~~pt~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~v   46 (50)
T 1ptq_A            8 YMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKV   46 (50)
T ss_dssp             CSSCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTTS
T ss_pred             CCCCCCcCCCCceeeccCCccCEeCCCCCeECHHHhhhc
Confidence            3568999999999998   48999999999999998754

>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*

Probab=97.79  E-value=8e-06  Score=57.08  Aligned_cols=46  Identities=22%  Similarity=0.550  Sum_probs=39.9

Q ss_pred             CCcceEeec-CcccccccccCCCCe---eEEcCCccceeccccccCcCcc
Q 043301           73 CHPLTLSKT-NHHRCDACLDECSGM---AYRCHECCYNLHYHCTALKPSI  118 (244)
Q Consensus        73 ~H~L~L~~~-~~~~Cd~Cg~~~~g~---~Y~C~~Cd~~lH~~Ca~~p~~i  118 (244)
                      .|.|....+ .+++|++|++.+.|+   +|+|..|+|++|.+|+...+..
T Consensus         9 ~H~F~~~~~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~v~~~   58 (65)
T 3uej_A            9 SHRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANL   58 (65)
T ss_dssp             ECCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTTSCSE
T ss_pred             CceEEeEeCCCCCcccccChhhhccCceeeECCCCCCeEchhHhhhCCCc
Confidence            688888776 899999999998774   6999999999999999887654

>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}

Probab=97.76  E-value=1.7e-05  Score=55.70  Aligned_cols=45  Identities=24%  Similarity=0.455  Sum_probs=39.7

Q ss_pred             CCcceEeec-CcccccccccCCCC---eeEEcCCccceeccccccCcCc
Q 043301           73 CHPLTLSKT-NHHRCDACLDECSG---MAYRCHECCYNLHYHCTALKPS  117 (244)
Q Consensus        73 ~H~L~L~~~-~~~~Cd~Cg~~~~g---~~Y~C~~Cd~~lH~~Ca~~p~~  117 (244)
                      .|.|...++ .+++|++|++.+.|   ..|+|..|+|++|.+|+...+.
T Consensus        13 ~H~F~~~~~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~v~~   61 (66)
T 1y8f_A           13 QHNFEVWTATTPTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDLLNA   61 (66)
T ss_dssp             CCCEEEEECSSCCCCTTTCCCCCSSCCEEEEETTTCCEECTTHHHHSCC
T ss_pred             CcccEeeeCCCCcChhhcChhhcccCcceeEcCCCCCeeCHHHHhhCcC
Confidence            788888877 89999999999887   4699999999999999987654

>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.75  E-value=2.2e-05  Score=56.33  Aligned_cols=46  Identities=24%  Similarity=0.398  Sum_probs=40.6

Q ss_pred             CCCCcceEeec-CcccccccccCCCCe---eEEcCCccceeccccccCcC
Q 043301           71 FHCHPLTLSKT-NHHRCDACLDECSGM---AYRCHECCYNLHYHCTALKP  116 (244)
Q Consensus        71 ~H~H~L~L~~~-~~~~Cd~Cg~~~~g~---~Y~C~~Cd~~lH~~Ca~~p~  116 (244)
                      ...|.|...++ .+++|++|++.+.|+   +|+|..|+|++|.+|+...+
T Consensus        15 ~~~H~F~~~~f~~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~v~   64 (74)
T 2db6_A           15 DKPHKFKDHFFKKPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSYVE   64 (74)
T ss_dssp             SSBCCEEEEECSSCEECSSSCCEECHHHHEEEEESSSCCEECTTTTGGGS
T ss_pred             CCCCceEEeeCCCCcCchhcChhhccccCCccccCCCCCccChhHHhhCC
Confidence            34899999888 899999999998874   79999999999999998764

>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}

Probab=97.73  E-value=1.6e-05  Score=57.55  Aligned_cols=48  Identities=25%  Similarity=0.520  Sum_probs=38.7

Q ss_pred             eCCCCCCCEeeeeccCCCcccccccccccCCCCC---cEEeCCCCCccccccccCC
Q 043301           12 HTSHMHYLIFNENEVGHDDVVIICDICETSLQGP---AYGCGTCEFSIHKSCAELP   64 (244)
Q Consensus        12 HpsHpH~L~L~~~~~~~~~~~~~C~~C~~~i~g~---~Y~C~~C~F~lH~~Ca~~p   64 (244)
                      |....|.|.. ..    ...+++|+.|+..|||+   +|+|..|+|.+|++|+...
T Consensus        19 ~~~~~H~F~~-~~----f~~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~v   69 (77)
T 2enn_A           19 HHVKCHEFTA-TF----FPQPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDKV   69 (77)
T ss_dssp             EESSSCEEEE-EC----CSSCEECSSSCCEECCTTCCEEECSSSCCEEESGGGSSC
T ss_pred             ccCCCCccEE-Ec----CCCCcCccccChhhccccccccCcCCCCCcCCHhHHhhC
Confidence            4444488876 22    35689999999999984   8999999999999999864

>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*

Probab=97.73  E-value=1.5e-05  Score=55.67  Aligned_cols=44  Identities=27%  Similarity=0.540  Sum_probs=36.3

Q ss_pred             CCCCEeeeeccCCCcccccccccccCCCC---CcEEeCCCCCccccccccCC
Q 043301           16 MHYLIFNENEVGHDDVVIICDICETSLQG---PAYGCGTCEFSIHKSCAELP   64 (244)
Q Consensus        16 pH~L~L~~~~~~~~~~~~~C~~C~~~i~g---~~Y~C~~C~F~lH~~Ca~~p   64 (244)
                      +|.|+. ..    ...+.+|+.|+..|||   .+|+|..|+|.+|++|+...
T Consensus         9 ~H~F~~-~~----~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~v   55 (65)
T 3uej_A            9 SHRFKV-YN----YMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKV   55 (65)
T ss_dssp             ECCEEE-EC----CSSCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTTS
T ss_pred             CceEEe-Ee----CCCCCcccccChhhhccCceeeECCCCCCeEchhHhhhC
Confidence            377776 22    3568999999999998   47999999999999999864

>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.71  E-value=3.2e-05  Score=56.63  Aligned_cols=48  Identities=27%  Similarity=0.532  Sum_probs=38.5

Q ss_pred             eCCCCCCCEeeeeccCCCcccccccccccCCCCC---cEEeCCCCCccccccccCC
Q 043301           12 HTSHMHYLIFNENEVGHDDVVIICDICETSLQGP---AYGCGTCEFSIHKSCAELP   64 (244)
Q Consensus        12 HpsHpH~L~L~~~~~~~~~~~~~C~~C~~~i~g~---~Y~C~~C~F~lH~~Ca~~p   64 (244)
                      |...+|.|+. ..    ...+++|+.|+..|||+   +|+|..|+|.+|++|+...
T Consensus        13 ~~~~~H~F~~-~~----~~~pt~C~~C~~~lwGl~kqg~~C~~C~~~~Hk~C~~~v   63 (83)
T 2yuu_A           13 HYIKNHEFIA-TF----FGQPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDKI   63 (83)
T ss_dssp             ECGGGCCEEE-EC----CSSCCCCSSSCCCCCSSSCCEEEETTTCCEECTTGGGTC
T ss_pred             cccCCCceEe-Ee----CCCCcChhhcChhhccccccccccCCcCCeeChhhhhhC
Confidence            3334488876 22    35689999999999984   8999999999999999863

>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.68  E-value=1.7e-05  Score=56.97  Aligned_cols=49  Identities=18%  Similarity=0.322  Sum_probs=39.4

Q ss_pred             eCCCCCCCEeeeeccCCCcccccccccccCCCC---CcEEeCCCCCccccccccCCC
Q 043301           12 HTSHMHYLIFNENEVGHDDVVIICDICETSLQG---PAYGCGTCEFSIHKSCAELPL   65 (244)
Q Consensus        12 HpsHpH~L~L~~~~~~~~~~~~~C~~C~~~i~g---~~Y~C~~C~F~lH~~Ca~~p~   65 (244)
                      +...+|.|+. ..    ...+++|+.|+..|||   .+|+|..|++.+|++|+....
T Consensus        13 ~~~~~H~F~~-~~----f~~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~v~   64 (74)
T 2db6_A           13 VNDKPHKFKD-HF----FKKPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSYVE   64 (74)
T ss_dssp             SCSSBCCEEE-EE----CSSCEECSSSCCEECHHHHEEEEESSSCCEECTTTTGGGS
T ss_pred             ccCCCCceEE-ee----CCCCcCchhcChhhccccCCccccCCCCCccChhHHhhCC
Confidence            3334499887 32    3568999999999998   489999999999999998543

>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}

Probab=97.65  E-value=3.1e-05  Score=55.98  Aligned_cols=46  Identities=24%  Similarity=0.602  Sum_probs=40.0

Q ss_pred             CCCcceEeec-CcccccccccCCCCe---eEEcCCccceeccccccCcCc
Q 043301           72 HCHPLTLSKT-NHHRCDACLDECSGM---AYRCHECCYNLHYHCTALKPS  117 (244)
Q Consensus        72 H~H~L~L~~~-~~~~Cd~Cg~~~~g~---~Y~C~~Cd~~lH~~Ca~~p~~  117 (244)
                      ..|.|...++ .+++|++|++.+.|+   .|+|..|+|++|.+|....+.
T Consensus        22 ~~H~F~~~~f~~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~v~~   71 (77)
T 2enn_A           22 KCHEFTATFFPQPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDKVIA   71 (77)
T ss_dssp             SSCEEEEECCSSCEECSSSCCEECCTTCCEEECSSSCCEEESGGGSSCCS
T ss_pred             CCCccEEEcCCCCcCccccChhhccccccccCcCCCCCcCCHhHHhhCcC
Confidence            3788888877 899999999988774   699999999999999987754

>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A

Probab=97.65  E-value=3.6e-05  Score=51.12  Aligned_cols=42  Identities=26%  Similarity=0.623  Sum_probs=35.3

Q ss_pred             CCCEeeeeccCCCcccccccccccCCCCCcEEeCCCCCccccccccCC
Q 043301           17 HYLIFNENEVGHDDVVIICDICETSLQGPAYGCGTCEFSIHKSCAELP   64 (244)
Q Consensus        17 H~L~L~~~~~~~~~~~~~C~~C~~~i~g~~Y~C~~C~F~lH~~Ca~~p   64 (244)
                      |.++. ..    ...+++|+.|+..+| .+|+|..|++.+|++|+...
T Consensus         4 H~F~~-~~----~~~pt~C~~C~~~l~-qG~~C~~C~~~~H~~C~~~v   45 (52)
T 1faq_A            4 HNFAR-KT----FLKLAFCDICQKFLL-NGFRCQTCGYKFHEHCSTKV   45 (52)
T ss_dssp             CCCEE-EC----CSSCEECTTSSSEEC-SEEECTTTTCCBCSTTSSSS
T ss_pred             ceeEe-Ee----CCCCcCCCCcccccc-cCCEeCCCCCeEChhHHhhC
Confidence            77765 22    356899999999999 89999999999999999854

>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.65  E-value=5.5e-05  Score=55.38  Aligned_cols=47  Identities=21%  Similarity=0.470  Sum_probs=40.6

Q ss_pred             CCCcceEeec-CcccccccccCCCCe---eEEcCCccceeccccccCcCcc
Q 043301           72 HCHPLTLSKT-NHHRCDACLDECSGM---AYRCHECCYNLHYHCTALKPSI  118 (244)
Q Consensus        72 H~H~L~L~~~-~~~~Cd~Cg~~~~g~---~Y~C~~Cd~~lH~~Ca~~p~~i  118 (244)
                      ..|.|...++ .+++|++|++.+.|+   +|+|..|.|.+|.+|....+..
T Consensus        16 ~~H~F~~~~~~~pt~C~~C~~~lwGl~kqg~~C~~C~~~~Hk~C~~~v~~~   66 (83)
T 2yuu_A           16 KNHEFIATFFGQPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDKIIGR   66 (83)
T ss_dssp             GGCCEEEECCSSCCCCSSSCCCCCSSSCCEEEETTTCCEECTTGGGTCCSC
T ss_pred             CCCceEeEeCCCCcChhhcChhhccccccccccCCcCCeeChhhhhhCCCc
Confidence            3788888877 899999999998874   6999999999999999876543

>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}

Probab=97.64  E-value=4.2e-05  Score=54.78  Aligned_cols=46  Identities=24%  Similarity=0.490  Sum_probs=37.4

Q ss_pred             CCCCCEe-eeeccCCCcccccccccccCCCCCcEEeCCCCCccccccccCCC
Q 043301           15 HMHYLIF-NENEVGHDDVVIICDICETSLQGPAYGCGTCEFSIHKSCAELPL   65 (244)
Q Consensus        15 HpH~L~L-~~~~~~~~~~~~~C~~C~~~i~g~~Y~C~~C~F~lH~~Ca~~p~   65 (244)
                      .+|.|.. ..     ...+++|+.|+..|...+|+|..|+|.+|++|+....
T Consensus        22 ~~H~F~~~~~-----~~~pt~C~~C~~~l~~qG~kC~~C~~~cHkkC~~~V~   68 (72)
T 2fnf_X           22 EGHRFVELAL-----RGGPGWCDLCGREVLRQALRCANCKFTCHSECRSLIQ   68 (72)
T ss_dssp             SSCCCEECCC-----CSSCCBCTTTSSBCSSCCEECTTSSCEECTGGGGGCC
T ss_pred             CCCccceeec-----CCCCcchhhhhHHHHhCcCccCCCCCeechhhhccCc
Confidence            4487765 21     3568999999999966799999999999999998643

>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}

Probab=97.63  E-value=2.9e-05  Score=53.41  Aligned_cols=46  Identities=24%  Similarity=0.490  Sum_probs=37.1

Q ss_pred             CCCCCEe-eeeccCCCcccccccccccCCCCCcEEeCCCCCccccccccCCC
Q 043301           15 HMHYLIF-NENEVGHDDVVIICDICETSLQGPAYGCGTCEFSIHKSCAELPL   65 (244)
Q Consensus        15 HpH~L~L-~~~~~~~~~~~~~C~~C~~~i~g~~Y~C~~C~F~lH~~Ca~~p~   65 (244)
                      .+|.+.. ..     ...+++|+.|+..|...+|+|+.|+|.+|++|+...+
T Consensus         9 ~~H~F~~~~~-----~~~pt~C~~C~~~i~kqg~kC~~C~~~cH~kC~~~v~   55 (59)
T 1rfh_A            9 EGHRFVELAL-----RGGPGWCDLCGREVLRQALRCANCKFTCHSECRSLIQ   55 (59)
T ss_dssp             SSCCCEECCC-----SSCCEECTTTCSEECSCCEECTTTSCEECHHHHTTCC
T ss_pred             CCCcCeeeec-----cCCCeEchhcchhhhhCccEeCCCCCeEehhhhhhCc
Confidence            3477765 21     4568999999999966799999999999999998643

>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}

Probab=97.62  E-value=2.4e-05  Score=54.86  Aligned_cols=43  Identities=26%  Similarity=0.485  Sum_probs=36.2

Q ss_pred             CCCEeeeeccCCCcccccccccccCCCCC---cEEeCCCCCccccccccCC
Q 043301           17 HYLIFNENEVGHDDVVIICDICETSLQGP---AYGCGTCEFSIHKSCAELP   64 (244)
Q Consensus        17 H~L~L~~~~~~~~~~~~~C~~C~~~i~g~---~Y~C~~C~F~lH~~Ca~~p   64 (244)
                      |.|+. ..    ...+++|+.|+..|||+   +|+|..|+|.+|++|+...
T Consensus        14 H~F~~-~~----~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~v   59 (66)
T 1y8f_A           14 HNFEV-WT----ATTPTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDLL   59 (66)
T ss_dssp             CCEEE-EE----CSSCCCCTTTCCCCCSSCCEEEEETTTCCEECTTHHHHS
T ss_pred             cccEe-ee----CCCCcChhhcChhhcccCcceeEcCCCCCeeCHHHHhhC
Confidence            88876 22    35689999999999984   7999999999999998753

>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A

Probab=97.29  E-value=0.00011  Score=48.85  Aligned_cols=42  Identities=19%  Similarity=0.488  Sum_probs=33.6

Q ss_pred             CCCEeeeeccCCCcccccccccccCCCCCcEEeCCCCCccccccccCCC
Q 043301           17 HYLIFNENEVGHDDVVIICDICETSLQGPAYGCGTCEFSIHKSCAELPL   65 (244)
Q Consensus        17 H~L~L~~~~~~~~~~~~~C~~C~~~i~g~~Y~C~~C~F~lH~~Ca~~p~   65 (244)
                      |.+.. ..    .. ..+|+.|+..|+ ++|+|.+|+|..|.+|+..++
T Consensus         5 HrF~~-~t----~~-~t~C~~C~k~i~-~G~kC~~Ck~~cH~kC~~~vp   46 (49)
T 1kbe_A            5 HRFST-KS----WL-SQVCNVCQKSMI-FGVKCKHCRLKCHNKCTKEAP   46 (49)
T ss_dssp             CCEEE-EC----CS-SCCCSSSCCSSC-CEEEETTTTEEESSSCTTTSC
T ss_pred             cccCc-cC----CC-CcCccccCceeE-CcCCCCCCCCccchhhcCcCC
Confidence            77665 21    23 489999999998 579999999999999998543

>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.17  E-value=0.0002  Score=50.00  Aligned_cols=47  Identities=19%  Similarity=0.447  Sum_probs=35.6

Q ss_pred             cccccccc-CCCCCcEEeCCC-CCccccccccCCCcCCCCCCCCcceEe
Q 043301           33 IICDICET-SLQGPAYGCGTC-EFSIHKSCAELPLKIDHPFHCHPLTLS   79 (244)
Q Consensus        33 ~~C~~C~~-~i~g~~Y~C~~C-~F~lH~~Ca~~p~~i~hp~H~H~L~L~   79 (244)
                      ..|++|+. +|.|.+|+|.+| +|+|+..|...........-.|++...
T Consensus        12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~   60 (63)
T 2e5r_A           12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEY   60 (63)
T ss_dssp             SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEE
T ss_pred             CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEE
Confidence            78999996 599999999999 799999998765432211126877654

>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6

Probab=97.03  E-value=0.00046  Score=50.60  Aligned_cols=48  Identities=25%  Similarity=0.521  Sum_probs=37.1

Q ss_pred             ccccccccc-CCCCCcEEeCCC-C---CccccccccCCCcCCCCCC--CCcceEeec
Q 043301           32 VIICDICET-SLQGPAYGCGTC-E---FSIHKSCAELPLKIDHPFH--CHPLTLSKT   81 (244)
Q Consensus        32 ~~~C~~C~~-~i~g~~Y~C~~C-~---F~lH~~Ca~~p~~i~hp~H--~H~L~L~~~   81 (244)
                      ...||.|+. +|.|.+|+|.+| +   |+|+..|.......  ..|  .|+|+....
T Consensus        21 ~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~--~~H~~~H~~~~i~~   75 (82)
T 2fc7_A           21 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHET--DIHKEDHQLEPIYR   75 (82)
T ss_dssp             SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCC--SSCCSSSCEEEECS
T ss_pred             cCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCcccc--CCCCCCCCEEEeeC
Confidence            568999995 799999999999 6   99999998764322  134  688876543

>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}

Probab=96.97  E-value=0.00077  Score=46.62  Aligned_cols=46  Identities=17%  Similarity=0.387  Sum_probs=37.0

Q ss_pred             CCcceEeec-CcccccccccCC-C-CeeEEcCCccceeccccccCcCcc
Q 043301           73 CHPLTLSKT-NHHRCDACLDEC-S-GMAYRCHECCYNLHYHCTALKPSI  118 (244)
Q Consensus        73 ~H~L~L~~~-~~~~Cd~Cg~~~-~-g~~Y~C~~Cd~~lH~~Ca~~p~~i  118 (244)
                      .|.|.-.+. .+.+|++||+.+ . ..+|+|..|.+..|..|....+..
T Consensus         8 ~H~F~~kt~~~~~~C~~Cg~~i~~gkq~~kC~dC~~~cH~~C~~~~~~~   56 (61)
T 4b6d_A            8 LHDFVSKTVIKPESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDRCPLP   56 (61)
T ss_dssp             CCCEEEEECCSCEECTTTCCEECTTCEEEEESSSSCEECGGGGGGSCSS
T ss_pred             ceeEEeeeccCCcccccccCEEEEeeEeeECCCCCCeEchhHhhcCCCC
Confidence            577777665 789999999975 2 257999999999999998776543

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=96.82  E-value=0.00018  Score=58.19  Aligned_cols=71  Identities=17%  Similarity=0.152  Sum_probs=53.0

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEe-ecCCCCChhhhhhhhhhcCCC-CccceeE
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTI-SESYPYSDDTLAQFILRLQNS-LRSKNMS  230 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  230 (244)
                      |.|.+..|..      +.|-+||+++         .+. ...+++||.+- ++.+|+|||   .|.|.|+.. |.+.-|+
T Consensus        23 L~V~l~~a~~------Lpg~~Dp~ak---------v~F-Rg~k~kTkvi~~~~~npvfnE---~F~wpl~~~ld~~e~L~   83 (144)
T 3l9b_A           23 LIVHLKTVSE------LRGRADRIAK---------VTF-RGQSFYSRVLENCEDVADFDE---TFRWPVASSIDRNEVLE   83 (144)
T ss_dssp             EEEEEEEEES------CCSCEEEEEE---------EEE-TTEEEECCCEEEECSCEEEEE---EEEEEESSCCCTTCEEE
T ss_pred             EEEEEEEecC------CCCCCCCeEE---------EEE-eccceeeEEeccCCCCceEcc---eEEecCCCCCCCCCEEE
Confidence            4477777753      2257999866         333 24678888333 588888888   699999876 8889999


Q ss_pred             EEEeccCccccc
Q 043301          231 VEFWDLDDVLVN  242 (244)
Q Consensus       231 ~~~~~~~~~~~~  242 (244)
                      |.|.|+++..+|
T Consensus        84 v~V~d~~~v~~n   95 (144)
T 3l9b_A           84 IQIFNYSKVFSN   95 (144)
T ss_dssp             EEEEEECTTSCC
T ss_pred             EEEEECccccCC
Confidence            999999998876

>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6

Probab=96.80  E-value=0.00043  Score=52.46  Aligned_cols=43  Identities=28%  Similarity=0.734  Sum_probs=34.6

Q ss_pred             ccccccccc-CCCCCcEEeCCC-CCccccccccCCCcCCCCCCCCcceEe
Q 043301           32 VIICDICET-SLQGPAYGCGTC-EFSIHKSCAELPLKIDHPFHCHPLTLS   79 (244)
Q Consensus        32 ~~~C~~C~~-~i~g~~Y~C~~C-~F~lH~~Ca~~p~~i~hp~H~H~L~L~   79 (244)
                      ...|+.|+. +|.|..|+|.+| +|+|+..|.....   |+  .|+|...
T Consensus        31 gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~---H~--~H~f~~i   75 (98)
T 2dip_A           31 GIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYC---HL--SHTFTFR   75 (98)
T ss_dssp             CCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTS---GG--GSCEEEC
T ss_pred             CCCCcCCCCCCcccCeEECCCCCCccHHHHHHccCC---CC--CCCeeEe
Confidence            479999996 799999999999 7999999976542   32  6777654

>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.76  E-value=0.00057  Score=47.62  Aligned_cols=33  Identities=33%  Similarity=0.757  Sum_probs=29.7

Q ss_pred             cccccccccC-CCCeeEEcCCc-cceeccccccCc
Q 043301           83 HHRCDACLDE-CSGMAYRCHEC-CYNLHYHCTALK  115 (244)
Q Consensus        83 ~~~Cd~Cg~~-~~g~~Y~C~~C-d~~lH~~Ca~~p  115 (244)
                      +..||.|++. +.|.+|+|..| ||+|+..|....
T Consensus        11 ~~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g   45 (63)
T 2e5r_A           11 PVECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRG   45 (63)
T ss_dssp             CSCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHC
T ss_pred             CCCCcCCCCcceecceEEecCCCCchhHHHHHhCC
Confidence            3689999986 99999999999 899999998765

>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6

Probab=96.73  E-value=0.00022  Score=47.88  Aligned_cols=41  Identities=20%  Similarity=0.592  Sum_probs=33.4

Q ss_pred             cccccccccCCCCCcEEeCCC-CCccccccccCCCcCCCCCCCCcceEe
Q 043301           32 VIICDICETSLQGPAYGCGTC-EFSIHKSCAELPLKIDHPFHCHPLTLS   79 (244)
Q Consensus        32 ~~~C~~C~~~i~g~~Y~C~~C-~F~lH~~Ca~~p~~i~hp~H~H~L~L~   79 (244)
                      ...|+.|...| |..|+|.+| +|+|+..|....      .|.|++.-.
T Consensus         6 ~~~Cd~C~~~i-g~R~~C~~C~dyDLC~~C~~~~------~H~H~m~~~   47 (52)
T 1tot_A            6 VYTCNECKHHV-ETRWHCTVCEDYDLCINCYNTK------SHTHKMVKW   47 (52)
T ss_dssp             CEEETTTTEEE-SSEEEESSSSSCEECHHHHHHH------CCCSSEEEE
T ss_pred             EEECCCCCCCC-cceEEcCCCCCchhHHHHHhCC------CCCCceEEe
Confidence            46899999986 899999999 799999998753      256777654

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=96.39  E-value=0.00068  Score=68.33  Aligned_cols=73  Identities=11%  Similarity=0.118  Sum_probs=45.1

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEee-c-CCCCChhhhhhhhh-hcCCCCcccee
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTIS-E-SYPYSDDTLAQFIL-RLQNSLRSKNM  229 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~-~-~~~~~~~~~~~~~~-~~~~~~~~~~~  229 (244)
                      |.++|-.|.+ |.    ++.+|||++++  +.+..  -+...+++|+.+|. + .||.|||  ++|.| .+...+.. .|
T Consensus       680 L~V~Visa~~-L~----~~~~DPYV~V~--l~g~p--~d~~~k~kTk~vv~~n~~NPvWnE--e~f~F~~v~~~el~-~L  747 (799)
T 2zkm_X          680 LSITVISGQF-LS----ERSVRTYVEVE--LFGLP--GDPKRRYRTKLSPSTNSINPVWKE--EPFVFEKILMPELA-SL  747 (799)
T ss_dssp             EEEEEEEEES-CC----SSCCCEEEEEE--EECCT--TSCCCCEECCCCSSSCCSSCBCCC--CCEEEEEESSGGGC-EE
T ss_pred             EEEEEEeccc-cC----ccCCCcEEEEE--EEecC--CCcccceeecccccCCCCCCeeec--ceEEEEEEccCCcc-EE
Confidence            4577777764 43    35699998855  11100  00112345663444 3 6899987  24999 78655555 79


Q ss_pred             EEEEeccC
Q 043301          230 SVEFWDLD  237 (244)
Q Consensus       230 ~~~~~~~~  237 (244)
                      .|+|||||
T Consensus       748 r~~V~D~d  755 (799)
T 2zkm_X          748 RVAVMEEG  755 (799)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEEeC
Confidence            99999997

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A

Probab=96.38  E-value=0.0022  Score=58.95  Aligned_cols=52  Identities=23%  Similarity=0.387  Sum_probs=39.8

Q ss_pred             CCcceEeec-CcccccccccCCCCe---eEEcCCccceeccccccCcCccccCccccCC
Q 043301           73 CHPLTLSKT-NHHRCDACLDECSGM---AYRCHECCYNLHYHCTALKPSINFKELKCVL  127 (244)
Q Consensus        73 ~H~L~L~~~-~~~~Cd~Cg~~~~g~---~Y~C~~Cd~~lH~~Ca~~p~~i~~~~~~h~~  127 (244)
                      .|.+...+. .+++|++|+..+.|+   +|+|..|++++|.+|....+.   |+.++.+
T Consensus       346 ~h~f~~~~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~~---C~~~~~~  401 (406)
T 2vrw_B          346 GHDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVPP---CGRHGQD  401 (406)
T ss_dssp             GCCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSCC---C------
T ss_pred             CCCCccccCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCCC---CCCCchh
Confidence            688888776 889999999988774   699999999999999987763   6665554

>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6

Probab=96.28  E-value=0.0013  Score=49.68  Aligned_cols=33  Identities=30%  Similarity=0.732  Sum_probs=29.6

Q ss_pred             ccccccccc-CCCCeeEEcCCc-cceeccccccCc
Q 043301           83 HHRCDACLD-ECSGMAYRCHEC-CYNLHYHCTALK  115 (244)
Q Consensus        83 ~~~Cd~Cg~-~~~g~~Y~C~~C-d~~lH~~Ca~~p  115 (244)
                      ...||.|+. .+.|.+|+|..| ||+++..|....
T Consensus        31 gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~   65 (98)
T 2dip_A           31 GIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSY   65 (98)
T ss_dssp             CCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTT
T ss_pred             CCCCcCCCCCCcccCeEECCCCCCccHHHHHHccC
Confidence            488999997 589999999999 899999998755

>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}

Probab=96.15  E-value=0.0026  Score=43.90  Aligned_cols=43  Identities=19%  Similarity=0.413  Sum_probs=33.6

Q ss_pred             CCCCEeeeeccCCCcccccccccccCC-CC-CcEEeCCCCCccccccccC
Q 043301           16 MHYLIFNENEVGHDDVVIICDICETSL-QG-PAYGCGTCEFSIHKSCAEL   63 (244)
Q Consensus        16 pH~L~L~~~~~~~~~~~~~C~~C~~~i-~g-~~Y~C~~C~F~lH~~Ca~~   63 (244)
                      +|.++- ..    ...+.+|+.|++.| +| .+|+|..|++..|+.|...
T Consensus         8 ~H~F~~-kt----~~~~~~C~~Cg~~i~~gkq~~kC~dC~~~cH~~C~~~   52 (61)
T 4b6d_A            8 LHDFVS-KT----VIKPESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDR   52 (61)
T ss_dssp             CCCEEE-EE----CCSCEECTTTCCEECTTCEEEEESSSSCEECGGGGGG
T ss_pred             ceeEEe-ee----ccCCcccccccCEEEEeeEeeECCCCCCeEchhHhhc
Confidence            466665 21    24578999999998 45 4799999999999999875

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=96.07  E-value=0.0011  Score=67.05  Aligned_cols=73  Identities=11%  Similarity=0.141  Sum_probs=44.4

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEee--cCCCCChhhhhhhhhh-cCCCCcccee
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTIS--ESYPYSDDTLAQFILR-LQNSLRSKNM  229 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~-~~~~~~~~~~  229 (244)
                      +.++|-.|.+ |..    ..+|||++++  +.+....- ...+++|+ +|.  ..||.|||.  .|.|. +...+. ..|
T Consensus       652 L~V~Visaq~-L~~----~~~DPYV~V~--l~g~p~d~-~~~k~kTk-vv~~nglNPvWNE~--~F~F~~v~~pel-a~L  719 (816)
T 3qr0_A          652 IEIKIISAQF-LSD----KQISSYVEVE--MYGLPTDT-VRKKFKTK-IIENNGMDPYYDEK--VFVFKKVVLPDL-AVV  719 (816)
T ss_dssp             EEEEEEEEEC-CCS----SCCCEEEEEE--EESSGGGC-EEEEEECC-CBCSCSSCCBCCCC--CEEEEEESCGGG-CEE
T ss_pred             EEEEEEEccc-CCC----CCCCCeEEEE--EeCCCccc-ccceeeeE-EecCCCCCCeEcCc--eeEEccccCCCc-cEE
Confidence            4467777764 432    3589998854  11111000 01345777 555  378999872  39988 654443 589


Q ss_pred             EEEEeccC
Q 043301          230 SVEFWDLD  237 (244)
Q Consensus       230 ~~~~~~~~  237 (244)
                      .++|||||
T Consensus       720 rf~V~D~d  727 (816)
T 3qr0_A          720 RIIVSEEN  727 (816)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEecC
Confidence            99999997

>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6

Probab=96.06  E-value=0.0048  Score=45.08  Aligned_cols=34  Identities=21%  Similarity=0.607  Sum_probs=30.0

Q ss_pred             Cccccccccc-CCCCeeEEcCCc-c---ceeccccccCc
Q 043301           82 NHHRCDACLD-ECSGMAYRCHEC-C---YNLHYHCTALK  115 (244)
Q Consensus        82 ~~~~Cd~Cg~-~~~g~~Y~C~~C-d---~~lH~~Ca~~p  115 (244)
                      ....||.|++ .+.|.+|+|..| +   |+|+..|....
T Consensus        20 ~~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g   58 (82)
T 2fc7_A           20 VGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCL   58 (82)
T ss_dssp             SSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCC
T ss_pred             CcCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCc
Confidence            4678999997 589999999999 6   99999999764

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=96.03  E-value=0.0033  Score=60.79  Aligned_cols=43  Identities=28%  Similarity=0.565  Sum_probs=36.4

Q ss_pred             CCCEeeeeccCCCcccccccccccCCCCC---cEEeCCCCCccccccccCC
Q 043301           17 HYLIFNENEVGHDDVVIICDICETSLQGP---AYGCGTCEFSIHKSCAELP   64 (244)
Q Consensus        17 H~L~L~~~~~~~~~~~~~C~~C~~~i~g~---~Y~C~~C~F~lH~~Ca~~p   64 (244)
                      |.++. ..    ...+++|+.|+..++|.   +|+|..|+|.+|++|+...
T Consensus       519 H~F~~-~~----~~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~v  564 (587)
T 3ky9_A          519 HDFQM-FS----FEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRV  564 (587)
T ss_dssp             CCEEE-EC----CSSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGGS
T ss_pred             CceeE-Ee----CCCCcccccccccccccccCCcCCCCCCCccchhhhhcC
Confidence            88877 22    35689999999999884   7999999999999999864

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=95.94  E-value=0.0042  Score=59.99  Aligned_cols=45  Identities=29%  Similarity=0.620  Sum_probs=39.8

Q ss_pred             CCCcceEeec-CcccccccccCCCCe---eEEcCCccceeccccccCcC
Q 043301           72 HCHPLTLSKT-NHHRCDACLDECSGM---AYRCHECCYNLHYHCTALKP  116 (244)
Q Consensus        72 H~H~L~L~~~-~~~~Cd~Cg~~~~g~---~Y~C~~Cd~~lH~~Ca~~p~  116 (244)
                      ..|.|...+. .++.|++|+..+.|.   +|+|..|++.+|.+|....+
T Consensus       517 ~~H~F~~~~~~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~v~  565 (587)
T 3ky9_A          517 NGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRVP  565 (587)
T ss_dssp             GGCCEEEECCSSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGGSC
T ss_pred             cCCceeEEeCCCCcccccccccccccccCCcCCCCCCCccchhhhhcCC
Confidence            4799999887 899999999987764   69999999999999998774

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=95.76  E-value=0.0043  Score=58.40  Aligned_cols=51  Identities=18%  Similarity=0.423  Sum_probs=36.6

Q ss_pred             eEeCCC--CCCCEeeeeccCCCcccccccccccCCCCC---cEEeCCCCCccccccccCCC
Q 043301           10 LKHTSH--MHYLIFNENEVGHDDVVIICDICETSLQGP---AYGCGTCEFSIHKSCAELPL   65 (244)
Q Consensus        10 I~HpsH--pH~L~L~~~~~~~~~~~~~C~~C~~~i~g~---~Y~C~~C~F~lH~~Ca~~p~   65 (244)
                      ..|+--  +|.+.. ..    ...+++|+.|+..+||.   +|+|..|++.+|++|+...+
T Consensus       201 ~~H~niv~~h~f~~-~~----~~~pt~C~~C~~~l~g~~~qg~~C~~C~~~~Hk~C~~~vp  256 (463)
T 3cxl_A          201 EQIPKYEKIHNFKV-HT----FRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVP  256 (463)
T ss_dssp             ------CBCCCEEE-EC----CSSCCBCTTTCCBCCSSSCCEEEETTTCCEECHHHHTTSC
T ss_pred             ccccccCCCcceEE-ee----cCCCCcchhhhhhhhhHHhcCeeccccCcccccccccccc
Confidence            355522  277776 22    35689999999999984   89999999999999987543

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=95.75  E-value=0.0053  Score=57.78  Aligned_cols=50  Identities=22%  Similarity=0.573  Sum_probs=41.6

Q ss_pred             CCcceEeec-CcccccccccCCCCe---eEEcCCccceeccccccCcCccccCccc
Q 043301           73 CHPLTLSKT-NHHRCDACLDECSGM---AYRCHECCYNLHYHCTALKPSINFKELK  124 (244)
Q Consensus        73 ~H~L~L~~~-~~~~Cd~Cg~~~~g~---~Y~C~~Cd~~lH~~Ca~~p~~i~~~~~~  124 (244)
                      .|.|...+. .+++|+.|++.+.|.   +|+|..|++.+|.+|....+..  |+..
T Consensus       209 ~h~f~~~~~~~pt~C~~C~~~l~g~~~qg~~C~~C~~~~Hk~C~~~vp~~--C~~~  262 (463)
T 3cxl_A          209 IHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPND--CKPD  262 (463)
T ss_dssp             CCCEEEECCSSCCBCTTTCCBCCSSSCCEEEETTTCCEECHHHHTTSCSB--CCGG
T ss_pred             CcceEEeecCCCCcchhhhhhhhhHHhcCeeccccCcccccccccccccc--cccc
Confidence            688888776 899999999988765   6999999999999999877654  5443

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A

Probab=95.72  E-value=0.006  Score=55.95  Aligned_cols=43  Identities=26%  Similarity=0.531  Sum_probs=35.1

Q ss_pred             CCCEeeeeccCCCcccccccccccCCCCC---cEEeCCCCCccccccccCC
Q 043301           17 HYLIFNENEVGHDDVVIICDICETSLQGP---AYGCGTCEFSIHKSCAELP   64 (244)
Q Consensus        17 H~L~L~~~~~~~~~~~~~C~~C~~~i~g~---~Y~C~~C~F~lH~~Ca~~p   64 (244)
                      |.+.. ..    ...+++|+.|+..++|+   +|+|..|++.+|++|....
T Consensus       347 h~f~~-~~----~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~  392 (406)
T 2vrw_B          347 HDFQM-FS----FEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRV  392 (406)
T ss_dssp             CCEEE-EC----CSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGS
T ss_pred             CCCcc-cc----CCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhC
Confidence            66655 21    35689999999999884   8999999999999998754

>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6

Probab=95.44  E-value=0.002  Score=43.11  Aligned_cols=32  Identities=25%  Similarity=0.669  Sum_probs=28.2

Q ss_pred             cccccccccCCCCeeEEcCCc-cceeccccccCc
Q 043301           83 HHRCDACLDECSGMAYRCHEC-CYNLHYHCTALK  115 (244)
Q Consensus        83 ~~~Cd~Cg~~~~g~~Y~C~~C-d~~lH~~Ca~~p  115 (244)
                      ...||.|++.+ |.+|+|..| ||++...|....
T Consensus         6 ~~~Cd~C~~~i-g~R~~C~~C~dyDLC~~C~~~~   38 (52)
T 1tot_A            6 VYTCNECKHHV-ETRWHCTVCEDYDLCINCYNTK   38 (52)
T ss_dssp             CEEETTTTEEE-SSEEEESSSSSCEECHHHHHHH
T ss_pred             EEECCCCCCCC-cceEEcCCCCCchhHHHHHhCC
Confidence            46799999985 899999999 899999998755

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=95.35  E-value=0.0028  Score=62.17  Aligned_cols=46  Identities=22%  Similarity=0.501  Sum_probs=0.0

Q ss_pred             CCcceEeec-CcccccccccCCCCe---eEEcCCccceeccccccCcCcc
Q 043301           73 CHPLTLSKT-NHHRCDACLDECSGM---AYRCHECCYNLHYHCTALKPSI  118 (244)
Q Consensus        73 ~H~L~L~~~-~~~~Cd~Cg~~~~g~---~Y~C~~Cd~~lH~~Ca~~p~~i  118 (244)
                      .|.|....+ .+++|++|+..+.|+   +|+|..|+|++|.+|....+..
T Consensus        37 ~H~f~~~~~~~p~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~~~   86 (674)
T 3pfq_A           37 NHKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHEFVTFS   86 (674)
T ss_dssp             --------------------------------------------------
T ss_pred             CceEEeeeCCCCCccccccccccccCCceeECCCCCCCcChhhcCcCccc
Confidence            577766655 799999999998774   6999999999999999877654

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=95.30  E-value=0.0052  Score=62.58  Aligned_cols=72  Identities=8%  Similarity=0.114  Sum_probs=43.9

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEee-c-CCCCChhhhhhhhhh-cCCCCcccee
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTIS-E-SYPYSDDTLAQFILR-LQNSLRSKNM  229 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~-~-~~~~~~~~~~~~~~~-~~~~~~~~~~  229 (244)
                      +.++|-.|.+ |..    ..+|||++++  +.++.  .+...+++|+ +|. + .||.|||  ++|.|. +...+. .-|
T Consensus       727 L~V~Visaq~-L~~----~~~DPYV~V~--l~g~p--~D~~~k~kTk-vi~~NglNPvWnE--e~F~F~~V~~pel-a~L  793 (885)
T 3ohm_B          727 LRVKVISGQF-LSD----RKVGIYVEVD--MFGLP--VDTRRKYRTR-TSQGNSFNPVWDE--EPFDFPKVVLPTL-ASL  793 (885)
T ss_dssp             EEEEEEEEES-CCS----SCCCEEEEEE--EESST--TTCBCCCCCC-CCSSCSSSCBCCC--CCEEEEEESCGGG-CEE
T ss_pred             EEEEEEEecc-Ccc----cCCCcEEEEE--EeCCC--cccccceeeE-EeeCCCcCCeecc--ceeEEeeEEcCCc-CEE
Confidence            4467777764 432    2489998854  11110  1111356788 564 3 7899987  249888 433332 369


Q ss_pred             EEEEeccC
Q 043301          230 SVEFWDLD  237 (244)
Q Consensus       230 ~~~~~~~~  237 (244)
                      .++|||||
T Consensus       794 rf~V~D~d  801 (885)
T 3ohm_B          794 RIAAFEEG  801 (885)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEcCC
Confidence            99999998

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=90.49  E-value=0.6  Score=35.10  Aligned_cols=79  Identities=16%  Similarity=0.359  Sum_probs=54.5

Q ss_pred             cccccccccccCCC-CCcEEeCCCCCccccccccCCCcCCCCCCCCcceEeec--CcccccccccCCC-CeeEEcCCccc
Q 043301           30 DVVIICDICETSLQ-GPAYGCGTCEFSIHKSCAELPLKIDHPFHCHPLTLSKT--NHHRCDACLDECS-GMAYRCHECCY  105 (244)
Q Consensus        30 ~~~~~C~~C~~~i~-g~~Y~C~~C~F~lH~~Ca~~p~~i~hp~H~H~L~L~~~--~~~~Cd~Cg~~~~-g~~Y~C~~Cd~  105 (244)
                      .....|..|+.... .....|..|.-.+|..|...+.... +.      -.++  .=..|.+|++... .....|..|+-
T Consensus         5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~-~~------~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~   77 (111)
T 2ysm_A            5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPL-KR------AGWQCPECKVCQNCKQSGEDSKMLVCDTCDK   77 (111)
T ss_dssp             CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTT-TS------TTCCCTTTCCCTTTCCCSCCTTEEECSSSCC
T ss_pred             CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccc-cc------cCccCCcCCcccccCccCCCCCeeECCCCCc
Confidence            34568999988753 3458999999999999998654210 00      0011  1235777887643 35799999999


Q ss_pred             eeccccccCc
Q 043301          106 NLHYHCTALK  115 (244)
Q Consensus       106 ~lH~~Ca~~p  115 (244)
                      .+|..|..-+
T Consensus        78 ~yH~~Cl~pp   87 (111)
T 2ysm_A           78 GYHTFCLQPV   87 (111)
T ss_dssp             EEEGGGSSSC
T ss_pred             HHhHHhcCCc
Confidence            9999998643

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=85.13  E-value=1.1  Score=31.24  Aligned_cols=37  Identities=27%  Similarity=0.647  Sum_probs=30.8

Q ss_pred             CcccccccccccCCCC-CcEEeCCCCCccccccccCCC
Q 043301           29 DDVVIICDICETSLQG-PAYGCGTCEFSIHKSCAELPL   65 (244)
Q Consensus        29 ~~~~~~C~~C~~~i~g-~~Y~C~~C~F~lH~~Ca~~p~   65 (244)
                      .....+|..|+..-.| ..-.|..|+--+|..|..++.
T Consensus        15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~   52 (75)
T 2k16_A           15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMA   52 (75)
T ss_dssp             SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSS
T ss_pred             CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCc
Confidence            3456789999998766 688999999999999998654

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=82.61  E-value=0.57  Score=35.65  Aligned_cols=77  Identities=21%  Similarity=0.438  Sum_probs=50.4

Q ss_pred             cccccccCC--------CCCcEEeCCCCCccccccccCCCcCCCCCCCCcceEeec--CcccccccccCC-CCeeEEcCC
Q 043301           34 ICDICETSL--------QGPAYGCGTCEFSIHKSCAELPLKIDHPFHCHPLTLSKT--NHHRCDACLDEC-SGMAYRCHE  102 (244)
Q Consensus        34 ~C~~C~~~i--------~g~~Y~C~~C~F~lH~~Ca~~p~~i~hp~H~H~L~L~~~--~~~~Cd~Cg~~~-~g~~Y~C~~  102 (244)
                      .|+.|....        .+..-.|..|.-.+|..|...+..+....    -.-.++  .=..|.+|++.. .+....|..
T Consensus         3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~----~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~   78 (114)
T 2kwj_A            3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAV----KTYKWQCIECKSCILCGTSENDDQLLFCDD   78 (114)
T ss_dssp             CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHH----HHTTCCCGGGCCCTTTTCCTTTTTEEECSS
T ss_pred             cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhcc----CCCccCccccCccCcccccCCCCceEEcCC
Confidence            588886543        23579999999999999998653210000    000000  122577888753 456789999


Q ss_pred             ccceeccccccC
Q 043301          103 CCYNLHYHCTAL  114 (244)
Q Consensus       103 Cd~~lH~~Ca~~  114 (244)
                      |+-.+|..|..-
T Consensus        79 C~~~yH~~Cl~p   90 (114)
T 2kwj_A           79 CDRGYHMYCLNP   90 (114)
T ss_dssp             SCCEEETTTSSS
T ss_pred             CCccccccccCC
Confidence            999999999873

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=81.49  E-value=0.57  Score=35.48  Aligned_cols=77  Identities=22%  Similarity=0.497  Sum_probs=50.3

Q ss_pred             ccccccccCC-------CCCcEEeCCCCCccccccccCCCcCCCCCCCCcceEeec--CcccccccccCC--CCeeEEcC
Q 043301           33 IICDICETSL-------QGPAYGCGTCEFSIHKSCAELPLKIDHPFHCHPLTLSKT--NHHRCDACLDEC--SGMAYRCH  101 (244)
Q Consensus        33 ~~C~~C~~~i-------~g~~Y~C~~C~F~lH~~Ca~~p~~i~hp~H~H~L~L~~~--~~~~Cd~Cg~~~--~g~~Y~C~  101 (244)
                      ..|..|...-       .+....|..|+-.+|..|......+....    -...+.  .=..|.+|+...  .+....|.
T Consensus         6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~----~~~~W~C~~C~~C~vC~~~~~~~~~ll~Cd   81 (112)
T 3v43_A            6 PICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRV----KALRWQCIECKTCSSCRDQGKNADNMLFCD   81 (112)
T ss_dssp             SSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHH----HTSCCCCTTTCCBTTTCCCCCTTCCCEECT
T ss_pred             ccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHh----hccccccccCCccccccCcCCCccceEEcC
Confidence            4788886542       23689999999999999997532110000    000011  223688888753  34678999


Q ss_pred             Cccceecccccc
Q 043301          102 ECCYNLHYHCTA  113 (244)
Q Consensus       102 ~Cd~~lH~~Ca~  113 (244)
                      .|+-.+|..|..
T Consensus        82 ~C~~~yH~~Cl~   93 (112)
T 3v43_A           82 SCDRGFHMECCD   93 (112)
T ss_dssp             TTCCEECGGGCS
T ss_pred             CCCCeeecccCC
Confidence            999999999975

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=81.28  E-value=2.4  Score=31.01  Aligned_cols=34  Identities=35%  Similarity=0.837  Sum_probs=27.7

Q ss_pred             CcccccccccccCCCCCcEEeCCCCCccccccccCC
Q 043301           29 DDVVIICDICETSLQGPAYGCGTCEFSIHKSCAELP   64 (244)
Q Consensus        29 ~~~~~~C~~C~~~i~g~~Y~C~~C~F~lH~~Ca~~p   64 (244)
                      ......|..|+..  |....|..|+-.+|..|...|
T Consensus        22 d~n~~~C~vC~~~--g~LL~CD~C~~~fH~~Cl~Pp   55 (88)
T 1fp0_A           22 DDSATICRVCQKP--GDLVMCNQCEFCFHLDCHLPA   55 (88)
T ss_dssp             SSSSSCCSSSCSS--SCCEECTTSSCEECTTSSSTT
T ss_pred             CCCCCcCcCcCCC--CCEEECCCCCCceecccCCCC
Confidence            3456789999975  568899999999999998643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	244
d1v5na_	89	g.49.1.3 (A:) Pdi-like hypothetical protein At1g60	2e-16
d1v5na_	89	g.49.1.3 (A:) Pdi-like hypothetical protein At1g60	2e-06

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 89

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 70.3 bits (172), Expect = 2e-16
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 49  CGTCEFSIHKSCAELPLKIDHPFH-CHPLTLSKTNHHRCDACLDECSGMAYRCHECCYNL 107
               E    +   + P K+ H  H  H L L++   + CD C +E +  +Y C EC ++L
Sbjct: 12  LKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYHCDECDFDL 71

Query: 108 HYHCTALKPS 117
           H  C AL   
Sbjct: 72  HAKC-ALNED 80

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 89

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 42.6 bits (100), Expect = 2e-06
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 7/63 (11%)

Query: 9  KLKHTSH-MHYLIFNENEVGHDDVVIICDICETSLQGPAYGCGTCEFSIHKSCAELPLKI 67
          K+KH  H  H L     +V        CD CE      +Y C  C+F +H  CA      
Sbjct: 29 KVKHVLHEEHELELTRVQVYT------CDKCEEEGTIWSYHCDECDFDLHAKCALNEDTK 82

Query: 68 DHP 70
          +  
Sbjct: 83 ESG 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	244
d1v5na_	89	Pdi-like hypothetical protein At1g60420 {Thale cre	99.59
d1v5na_	89	Pdi-like hypothetical protein At1g60420 {Thale cre	99.55
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.22
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	98.9
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	98.72
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	98.72
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	98.7
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	98.7
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	98.66
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	98.57
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	98.54
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	98.53
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	98.49
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	98.4
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	98.38
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	98.31
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	98.19
d1tbna_	66	Protein kinase c-gamma {Rat (Rattus rattus) [TaxId	98.18
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	98.17
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	98.17
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	98.1
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	98.08
d1tbna_	66	Protein kinase c-gamma {Rat (Rattus rattus) [TaxId	97.82
d1faqa_	52	RAF-1 {Human (Homo sapiens) [TaxId: 9606]}	97.76
d1xa6a3	62	Beta-chimaerin, middle domain {Human (Homo sapiens	97.74
d1faqa_	52	RAF-1 {Human (Homo sapiens) [TaxId: 9606]}	97.69
d1ptqa_	50	Protein kinase C-delta (PKCdelta) {Mouse (Mus musc	97.62
d1xa6a3	62	Beta-chimaerin, middle domain {Human (Homo sapiens	97.61
d1kbea_	49	Kinase suppressor of Ras, Ksr {Mouse (Mus musculus	97.61
d1ptqa_	50	Protein kinase C-delta (PKCdelta) {Mouse (Mus musc	97.49
d1kbea_	49	Kinase suppressor of Ras, Ksr {Mouse (Mus musculus	97.36
d2fc7a1	69	Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu	97.16
d2dipa1	85	Zinc finger ZZ-type-containing protein 2 {Human (H	96.87
d1tota1	52	CREB-binding protein, CBP {Mouse (Mus musculus) [T	96.85
d2fc7a1	69	Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu	96.63
d1r79a_	84	Diacylglycerol kinase delta {Human (Homo sapiens)	96.53
d1r79a_	84	Diacylglycerol kinase delta {Human (Homo sapiens)	96.43
d2dipa1	85	Zinc finger ZZ-type-containing protein 2 {Human (H	96.33
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	95.61
d1tota1	52	CREB-binding protein, CBP {Mouse (Mus musculus) [T	94.85
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	86.29
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	80.03

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.59  E-value=4.8e-17  Score=120.65  Aligned_cols=75  Identities=27%  Similarity=0.539  Sum_probs=70.4

Q ss_pred             CCCcEEeCCCCCccccccccCCCcCCCCCC-CCcceEeecCcccccccccCCCCeeEEcCCccceeccccccCcCc
Q 043301           43 QGPAYGCGTCEFSIHKSCAELPLKIDHPFH-CHPLTLSKTNHHRCDACLDECSGMAYRCHECCYNLHYHCTALKPS  117 (244)
Q Consensus        43 ~g~~Y~C~~C~F~lH~~Ca~~p~~i~hp~H-~H~L~L~~~~~~~Cd~Cg~~~~g~~Y~C~~Cd~~lH~~Ca~~p~~  117 (244)
                      .|..|+|.+|++.+|+.|+.+|.+|+|+.| .|+|+|.......|++|++.+.||+|+|..|+|++|..||..|..
T Consensus         6 ~~t~~~~~e~~~~~he~c~~~P~~I~Hp~Hp~H~L~L~~~~~~~C~~C~~~~~g~~Y~C~~C~f~LH~~CA~~P~~   81 (89)
T d1v5na_           6 SGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYHCDECDFDLHAKCALNEDT   81 (89)
T ss_dssp             CCCSSCCSHHHHHHHHHTSSSCSEECCSTTTTSCEEEECCSSCCCTTTSCCCCSCEEECTTTCCCCCHHHHHCSSC
T ss_pred             CchHHHHHHHHhhhhHHHhcCCCeecCCCCCCCCeEEecCCCCEeCCCCCCcCCcEeEeccCCCEecHHHcCCCcc
Confidence            467899999999999999999999999999 699999887788999999999999999999999999999999854

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.55  E-value=8.3e-16  Score=113.89  Aligned_cols=62  Identities=29%  Similarity=0.423  Sum_probs=54.9

Q ss_pred             CcCCCCCceEeCCCC-CCCEeeeeccCCCcccccccccccCCCCCcEEeCCCCCccccccccCCCcCCC
Q 043301            2 EKQFERDKLKHTSHM-HYLIFNENEVGHDDVVIICDICETSLQGPAYGCGTCEFSIHKSCAELPLKIDH   69 (244)
Q Consensus         2 ~~a~~p~~I~HpsHp-H~L~L~~~~~~~~~~~~~C~~C~~~i~g~~Y~C~~C~F~lH~~Ca~~p~~i~h   69 (244)
                      +|+++|++|+||+|| |+|+| ..     ...+.|++|++.+.|++|+|..|+|+||..||..|.+++.
T Consensus        22 ~c~~~P~~I~Hp~Hp~H~L~L-~~-----~~~~~C~~C~~~~~g~~Y~C~~C~f~LH~~CA~~P~~~~~   84 (89)
T d1v5na_          22 IAKDWPKKVKHVLHEEHELEL-TR-----VQVYTCDKCEEEGTIWSYHCDECDFDLHAKCALNEDTKES   84 (89)
T ss_dssp             HTSSSCSEECCSTTTTSCEEE-EC-----CSSCCCTTTSCCCCSCEEECTTTCCCCCHHHHHCSSCSSC
T ss_pred             HHhcCCCeecCCCCCCCCeEE-ec-----CCCCEeCCCCCCcCCcEeEeccCCCEecHHHcCCCcccCC
Confidence            489999999999999 99999 33     2357899999999999999999999999999999887643

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=9.1e-13  Score=102.24  Aligned_cols=91  Identities=22%  Similarity=0.287  Sum_probs=73.1

Q ss_pred             CCCcEEEEEeccCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccc----cCCCCceeEeecCCCCChhhhh
Q 043301          139 PQDVELRTIQERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE----TGDQGSKVTISESYPYSDDTLA  214 (244)
Q Consensus       139 p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~----~~~~~~~~~i~~~~~~~~~~~~  214 (244)
                      +|++.+++..+.+.|.++|.+|.+ |.+||.+|.+|||+++.         |.+    ..+++|++.-.+.+|.|||   
T Consensus         3 rG~i~l~~~~~~~~L~V~V~~a~~-L~~~d~~g~~DpYv~v~---------l~~~~~~~~~~kT~v~~~t~nP~wne---   69 (132)
T d1a25a_           3 RGRIYIQAHIDREVLIVVVRDAKN-LVPMDPNGLSDPYVKLK---------LIPDPKSESKQKTKTIKCSLNPEWNE---   69 (132)
T ss_dssp             TCEEEEEEEESSSEEEEEEEEEES-CCCCSTTSCCCEEEEEE---------EESCTTCSSCEECCCCSSCSSCEEEE---
T ss_pred             ccEEEEEEEecCCEEEEEEEeeeC-CCCCCCCCCcCeEEEEE---------EccCCCCccccEEeeecCCCCCccce---
Confidence            488888888888999999999984 89999999999998843         322    2344566333466788887   


Q ss_pred             hhhhhcCCCCccceeEEEEeccCccccc
Q 043301          215 QFILRLQNSLRSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (244)
                      .|.|.+...+.++.|.|+|||+|+.+++
T Consensus        70 ~f~f~v~~~~~~~~L~i~V~d~d~~~~d   97 (132)
T d1a25a_          70 TFRFQLKESDKDRRLSVEIWDWDLTSRN   97 (132)
T ss_dssp             EEEEECCSGGGGCEEEEEEEECCSSSCC
T ss_pred             EEEEEeEccccCCEEeEEEEecCCCCCC
Confidence            6999998888889999999999998765

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.90  E-value=1e-10  Score=90.29  Aligned_cols=90  Identities=12%  Similarity=0.143  Sum_probs=65.3

Q ss_pred             CCcEEEEEe--ccCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc--CCCCceeEeecCCCCChhhhhh
Q 043301          140 QDVELRTIQ--ERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET--GDQGSKVTISESYPYSDDTLAQ  215 (244)
Q Consensus       140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~--~~~~~~~~i~~~~~~~~~~~~~  215 (244)
                      |++++...-  ..+.|.++|.+|.+ |.++|.+|.+|||++         ..|.+.  ..++|++.-.+.+|.|||   +
T Consensus         5 G~l~~sl~y~~~~~~L~V~V~~a~~-L~~~~~~g~~dpyv~---------v~l~~~~~~~~kT~v~~~t~~P~wne---~   71 (130)
T d1dqva1           5 GRISFALRYLYGSDQLVVRILQALD-LPAKDSNGFSDPYVK---------IYLLPDRKKKFQTKVHRKTLNPIFNE---T   71 (130)
T ss_dssp             CEEEEEEECCSSSCEEEEEEEEEEC-CCCCSTTSCCCEEEE---------EECTTSTTSCEECCCCCSCSSCEEEE---E
T ss_pred             EEEEEEEEEECCCCEEEEEEEeeeC-CccccCCCCcceEEE---------EEEccCCCceEeceeEcCCCCeeeee---E
Confidence            445444432  35567799999975 889999999999987         334332  345666333466788887   6


Q ss_pred             hhhhcCCCC-ccceeEEEEeccCccccc
Q 043301          216 FILRLQNSL-RSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       216 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~  242 (244)
                      |.|.+...+ .+..|.|+|||+|+..+|
T Consensus        72 f~f~v~~~~~~~~~L~v~V~d~~~~~~d   99 (130)
T d1dqva1          72 FQFSVPLAELAQRKLHFSVYDFDRFSRH   99 (130)
T ss_dssp             EEEECCGGGGSSCCCEEEEEECCSSSCC
T ss_pred             EEEEEchHHcCCCeEEEEEEEcCCCCCC
Confidence            999987665 456799999999998776

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.72  E-value=8.6e-10  Score=85.56  Aligned_cols=99  Identities=14%  Similarity=0.137  Sum_probs=66.2

Q ss_pred             CCcEEEEEeccCCcceeeecccccccccCCCCcchhhHHHHhhhhcc---c-ccccccCCCCceeEeecCCCCChhhhhh
Q 043301          140 QDVELRTIQERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGI---K-KTLSETGDQGSKVTISESYPYSDDTLAQ  215 (244)
Q Consensus       140 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~---~-~~l~~~~~~~~~~~i~~~~~~~~~~~~~  215 (244)
                      |.+++...-..+.|.++|-+|.+ |.++|.+|.+|||+++.---...   . ..-....+++|++.-.+.+|.|||   +
T Consensus         7 G~l~lsl~y~~~~L~V~V~~A~~-L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne---~   82 (142)
T d1rh8a_           7 GEIQLQINYDLGNLIIHILQARN-LVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQ---T   82 (142)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEES-CCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEE---E
T ss_pred             eEEEEEEEEeCCEEEEEEEEeEC-CCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEE---E
Confidence            55666655566789999999974 89999999999998754100000   0 001112345677333467788887   6


Q ss_pred             hhhh-cCCCC-ccceeEEEEeccCccccc
Q 043301          216 FILR-LQNSL-RSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       216 ~~~~-~~~~~-~~~~~~~~~~~~~~~~~~  242 (244)
                      |.|. +..++ .+..|.|+|||+|+.++|
T Consensus        83 f~f~~~~~~~~~~~~L~i~V~d~d~~~~~  111 (142)
T d1rh8a_          83 VIYKSISMEQLMKKTLEVTVWDYDRFSSN  111 (142)
T ss_dssp             EEECSCCHHHHTTCEEEEEEEEECSSSCE
T ss_pred             EEEeeecccccCCCEEEEEEEEecCCCCC
Confidence            9887 44443 567899999999987764

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.72  E-value=7.3e-10  Score=86.12  Aligned_cols=80  Identities=11%  Similarity=0.108  Sum_probs=54.7

Q ss_pred             cCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhhhhhhhhcCCCCc
Q 043301          150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTLAQFILRLQNSLR  225 (244)
Q Consensus       150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  225 (244)
                      .+.|.++|-+|. +|.++|.+|.+|||+++         .|.+.    .+++|++.-.+.+|.|||   +|.|.+.+.+.
T Consensus        14 ~~~L~V~v~~a~-~L~~~~~~~~~dpyvkv---------~l~~~~~~~~~~kT~~~~~t~~P~wne---~f~F~v~~~~~   80 (138)
T d1w15a_          14 TNTLTVVVLKAR-HLPKSDVSGLSDPYVKV---------NLYHAKKRISKKKTHVKKCTPNAVFNE---LFVFDIPCESL   80 (138)
T ss_dssp             TTEEEEEEEEEE-SCC------CCCEEEEE---------EEEETTEEEEEEECCCCCSCSSEEEEE---EEEEECCSSSS
T ss_pred             CCEEEEEEEEeE-CCCCCCCCCCcCEEEEE---------EEeCCcccCccccceeECCCCCCeECc---EEEEEecHHHh
Confidence            556889999997 48999999999999773         33222    344566333467788777   79999977664


Q ss_pred             -cceeEEEEeccCccccc
Q 043301          226 -SKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       226 -~~~~~~~~~~~~~~~~~  242 (244)
                       +..|.|+|||+|+.++|
T Consensus        81 ~~~~l~i~v~d~~~~~~~   98 (138)
T d1w15a_          81 EEISVEFLVLDSERGSRN   98 (138)
T ss_dssp             TTEEEEEEEEECCTTSCC
T ss_pred             CccEEEEEEEeCCCCCCC
Confidence             56799999999998876

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=9e-10  Score=84.21  Aligned_cols=75  Identities=12%  Similarity=0.083  Sum_probs=56.8

Q ss_pred             CcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEE
Q 043301          152 PEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSV  231 (244)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (244)
                      .|.++|-+|.+ |.++|.+|.+|||++++         +..+ +++|++.-.+.+|.|||   +|.|.+...  ...|.|
T Consensus         7 ~L~V~v~~A~~-L~~~d~~g~~Dpyv~v~---------~~~~-~~~T~~~~~t~nP~wne---~f~f~v~~~--~~~L~i   70 (126)
T d2ep6a1           7 ILQVKVLKAAD-LLAADFSGKSDPFCLLE---------LGND-RLQTHTVYKNLNPEWNK---VFTFPIKDI--HDVLEV   70 (126)
T ss_dssp             EEEEEEEEEES-CCCSSSSSCCCEEEEEE---------ETTE-EEECCCCSSCSSCCCCE---EEEEEESCT--TCEEEE
T ss_pred             EEEEEEEEeEC-CCCCCCCCCcCeEEEEE---------cCCe-EEEEEeeCCceeEEEEE---EEEEEEecc--CceeEE
Confidence            35588999974 89999999999998754         3332 35566333477899987   699998643  468999


Q ss_pred             EEeccCccccc
Q 043301          232 EFWDLDDVLVN  242 (244)
Q Consensus       232 ~~~~~~~~~~~  242 (244)
                      +|||+|..+++
T Consensus        71 ~V~d~~~~~~d   81 (126)
T d2ep6a1          71 TVFDEDGDKPP   81 (126)
T ss_dssp             EEEEEETTEEE
T ss_pred             EEEEccCCcCc
Confidence            99999987764

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=8e-10  Score=86.40  Aligned_cols=90  Identities=14%  Similarity=0.133  Sum_probs=64.3

Q ss_pred             CCcEEEEEe--ccCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc--CCCCceeEeecCCCCChhhhhh
Q 043301          140 QDVELRTIQ--ERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET--GDQGSKVTISESYPYSDDTLAQ  215 (244)
Q Consensus       140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~--~~~~~~~~i~~~~~~~~~~~~~  215 (244)
                      |.+++...-  ..+.|.++|-+|.+ |.++|.+|.+|||+++         .|.+.  ...+|++.-.+.+|.|||   +
T Consensus        21 G~l~~sl~y~~~~~~L~V~V~~a~~-L~~~~~~g~~dpyV~v---------~l~~~~~~~~kT~~~~~t~~P~wne---~   87 (143)
T d1rsya_          21 GKLQYSLDYDFQNNQLLVGIIQAAE-LPALDMGGTSDPYVKV---------FLLPDKKKKFETKVHRKTLNPVFNE---Q   87 (143)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEES-CCCCSTTSCCCEEEEE---------EEETTCCSCEECCCCTTCSSCEEEE---E
T ss_pred             eEEEEEEEEeCCCCEEEEEEEEccC-CCCCCCCCCCCeEEEE---------EEcCCCCeeEEEEEeccccCcceee---e
Confidence            455544432  35678899999985 8999999999999873         34333  233455323366787777   6


Q ss_pred             hhhhcCCCC-ccceeEEEEeccCccccc
Q 043301          216 FILRLQNSL-RSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       216 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~  242 (244)
                      |.|.+...+ .+..|.|+|||+|+.+++
T Consensus        88 f~f~i~~~~l~~~~L~i~V~d~d~~~~~  115 (143)
T d1rsya_          88 FTFKVPYSELGGKTLVMAVYDFDRFSKH  115 (143)
T ss_dssp             EEECCCHHHHTTCEEEEEEEECCSSSCC
T ss_pred             eEEEEEeeccCCceEEEEEEEcCCCCCC
Confidence            999987664 567899999999998775

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.66  E-value=2e-09  Score=82.95  Aligned_cols=90  Identities=13%  Similarity=0.200  Sum_probs=65.4

Q ss_pred             CCcEEEEEe--ccCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhh
Q 043301          140 QDVELRTIQ--ERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTL  213 (244)
Q Consensus       140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~  213 (244)
                      |++++...-  ..+.|.+.|.+|.+ |.+++.+|.+|||+++         .|.+.    .+++|++.-.+.+|.|||  
T Consensus         2 G~l~l~l~Y~~~~~~L~V~v~~a~n-L~~~~~~~~~dpyv~v---------~l~~~~~~~~~~kT~v~~~t~~P~wne--   69 (137)
T d2cm5a1           2 GKILVSLMYSTQQGGLIVGIIRCVH-LAAMDANGYSDPFVKL---------WLKPDMGKKAKHKTQIKKKTLNPEFNE--   69 (137)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEES-CCCCSTTSCCCEEEEE---------EEETC---CCEEECCCCCSCSSCEEEE--
T ss_pred             cEEEEEEEEECCCCEEEEEEEEEEC-CCCCCCCCCcCeEEEE---------EEEcCCccceeecCEeEcCCCCCccce--
Confidence            444444432  45567799999985 8889999999999874         33222    334566444467788887  


Q ss_pred             hhhhhhcCCCCc-cceeEEEEeccCccccc
Q 043301          214 AQFILRLQNSLR-SKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       214 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  242 (244)
                       +|.|.+.+.+. +..|.|.|||+|+.+++
T Consensus        70 -~f~f~v~~~~l~~~~l~v~v~~~~~~~~~   98 (137)
T d2cm5a1          70 -EFFYDIKHSDLAKKSLDISVWDYDIGKSN   98 (137)
T ss_dssp             -EEEEECCGGGGGGCEEEEEEEECCSSSCC
T ss_pred             -EEEEEeEHHHccccEEEEEeeeCCCCCCC
Confidence             69999987764 56799999999998776

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=7.7e-09  Score=80.30  Aligned_cols=91  Identities=11%  Similarity=0.097  Sum_probs=65.0

Q ss_pred             CCcEEEEE--eccCCcceeeecccccccccCCCCc-chhhHHHHhhhhcccccccccC--CCCceeEeecCCCCChhhhh
Q 043301          140 QDVELRTI--QERNPEDLTFHDVFSSFTEKDRNQL-DDITENIESEIAGIKKTLSETG--DQGSKVTISESYPYSDDTLA  214 (244)
Q Consensus       140 ~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~n~l-~d~~~~~~~~~~~~~~~l~~~~--~~~~~~~i~~~~~~~~~~~~  214 (244)
                      |++++...  ...+.|.++|-+|.+ |.++|..|. +|||++         ..|.+..  .++|++.-.+.+|.|||   
T Consensus         9 G~l~~sl~Y~~~~~~L~V~V~~a~~-L~~~d~~~~~~dpyV~---------v~l~~~~~~~~kT~v~~~t~nP~wne---   75 (138)
T d1ugka_           9 GTLFFSLEYNFERKAFVVNIKEARG-LPAMDEQSMTSDPYIK---------MTILPEKKHKVKTRVLRKTLDPAFDE---   75 (138)
T ss_dssp             CEEEEEEEEEGGGTEEEEEEEEEES-CCCCBTTTTBCEEEEE---------EEEETTTCSEEECCCCSSCSSCEEEE---
T ss_pred             EEEEEEEEEeCCCCEEEEEEEEecC-CCCCCCCCCccceEEE---------EEEcCCCCEeEeCeeEeCCCCCceee---
Confidence            56665554  346778899999975 888987775 799977         4454443  34566333477788887   


Q ss_pred             hhhhh-cCCCC-ccceeEEEEeccCcccccC
Q 043301          215 QFILR-LQNSL-RSKNMSVEFWDLDDVLVNV  243 (244)
Q Consensus       215 ~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~  243 (244)
                      +|.|. +...+ .+..|.|+|||+|+.++|.
T Consensus        76 ~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~~  106 (138)
T d1ugka_          76 TFTFYGIPYTQIQELALHFTILSFDRFSRDD  106 (138)
T ss_dssp             EEEEECCCSTTGGGCEEEEEEEEECSSCCCC
T ss_pred             EEEEeeeCHHHcccceEEEEEEECCCCCCCc
Confidence            69985 55444 5678999999999988864

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.54  E-value=5.4e-09  Score=81.59  Aligned_cols=90  Identities=10%  Similarity=0.116  Sum_probs=65.0

Q ss_pred             CCcEEEEEe--ccCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhh
Q 043301          140 QDVELRTIQ--ERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTL  213 (244)
Q Consensus       140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~  213 (244)
                      |++++...-  ..+.+.++|.+|.+ |.+++.+|.+|||+++.         |.+.    .+++|++.-.+.+|.|||  
T Consensus         7 G~l~~sl~Y~~~~~~L~V~V~~a~n-L~~~~~~~~~dpyv~v~---------l~~~~~~~~~~kT~~~~~t~~P~wne--   74 (145)
T d1dqva2           7 GELNFSLCYLPTAGLLTVTIIKASN-LKAMDLTGFSDPYVKAS---------LISEGRRLKKRKTSIKKNTLNPTYNE--   74 (145)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEES-CCCCSSSSCCCEEEEEC---------CCTTCCTTSCEECCCCCSCSSCEEEE--
T ss_pred             eEEEEEEEEcCCCCEEEEEEEEEeC-CCCcCCCCCcCceEEEE---------EccCCccceeecCEEEeCCCCceecc--
Confidence            445444432  24557899999984 88999999999998843         4333    234566344466788877  


Q ss_pred             hhhhhhcCCCC-ccceeEEEEeccCccccc
Q 043301          214 AQFILRLQNSL-RSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       214 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  242 (244)
                       +|.|.+.+++ ....|.|+|||+|..++|
T Consensus        75 -~f~F~v~~~~~~~~~l~v~v~d~~~~~~~  103 (145)
T d1dqva2          75 -ALVFDVAPESVENVGLSIAVVDYDCIGHN  103 (145)
T ss_dssp             -CCCCCCCSGGGGSCCCCCEEEECCSSSCC
T ss_pred             -eEEEEEehhhcCCCEEEEEEEecCCCCCC
Confidence             6999988775 556799999999998876

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.53  E-value=4.2e-09  Score=81.28  Aligned_cols=75  Identities=15%  Similarity=0.168  Sum_probs=55.6

Q ss_pred             CcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEe-ecCCCCChhhhhhhhhhcCCCCccceeE
Q 043301          152 PEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTI-SESYPYSDDTLAQFILRLQNSLRSKNMS  230 (244)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (244)
                      .|.++|-+|. .|.++|.+|.+|||+++.         +... .++|+++. .+.+|.|||   +|.|.+..  .++.|.
T Consensus        11 ~L~V~v~~a~-~L~~~d~~g~~Dpyv~v~---------~~~~-~~~t~~~~~~~~nP~Wne---~f~f~v~~--~~~~L~   74 (136)
T d1wfja_          11 TLEVVLVSAK-GLEDADFLNNMDPYVQLT---------CRTQ-DQKSNVAEGMGTTPEWNE---TFIFTVSE--GTTELK   74 (136)
T ss_dssp             EEEEEEEEEE-ECSSCCSSCSSCCCEEEE---------SSSC-EEECCCCTTCCSSCEEEE---EEEEEEES--SCCEEE
T ss_pred             EEEEEEEEee-CCCCCCCCCCCCccEEEE---------Eeee-eEEEEEEecCCCcEEEee---EEEEEEcC--ccceEE
Confidence            3458899997 588999999999998743         3332 34555344 367899988   68888875  445699


Q ss_pred             EEEeccCccccc
Q 043301          231 VEFWDLDDVLVN  242 (244)
Q Consensus       231 ~~~~~~~~~~~~  242 (244)
                      |+|||+|+.+++
T Consensus        75 v~V~d~d~~~~d   86 (136)
T d1wfja_          75 AKIFDKDVGTED   86 (136)
T ss_dssp             EEECCSSSCTTT
T ss_pred             EEEEEecCCCCC
Confidence            999999988764

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.49  E-value=1.1e-08  Score=81.19  Aligned_cols=91  Identities=14%  Similarity=0.169  Sum_probs=67.4

Q ss_pred             CCcEEEEEe--ccCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhh
Q 043301          140 QDVELRTIQ--ERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTL  213 (244)
Q Consensus       140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~  213 (244)
                      |++++...-  ..+.+.++|..|.+ |.+++.+|.+|||+++.         |.+.    ..++|++.-.+.+|.|||  
T Consensus        12 G~l~~sl~Y~~~~~~L~V~V~~a~~-L~~~~~~~~~dpyV~v~---------l~~~~~~~~~~kT~v~~~t~nP~wne--   79 (157)
T d1uowa_          12 GDICFSLRYVPTAGKLTVVILEAKN-LKKMDVGGLSDPYVKIH---------LMQNGKRLKKKKTTIKKNTLNPYYNE--   79 (157)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEES-CCCCSTTSCCCEEEEEE---------EEETTEEEEEEECCCCCSCSSCEEEE--
T ss_pred             eEEEEEEEEcCCCCEEEEEEEEEEE-cccccCCCCCCeeEEEE---------EecCCccccceecccccCCCCcccCC--
Confidence            666666543  35678899999985 88899999999998743         3322    233566444466888887  


Q ss_pred             hhhhhhcCCCCc-cceeEEEEeccCcccccC
Q 043301          214 AQFILRLQNSLR-SKNMSVEFWDLDDVLVNV  243 (244)
Q Consensus       214 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  243 (244)
                       +|.|.+.+.+. +..|.|+|||.|+.+++.
T Consensus        80 -~f~F~v~~~~l~~~~l~i~v~d~~~~~~~~  109 (157)
T d1uowa_          80 -SFSFEVPFEQIQKVQVVVTVLDYDKIGKND  109 (157)
T ss_dssp             -EEEEECCGGGGGGCEEEEEEEECCSSSCCC
T ss_pred             -eEEEEecHHHcCccEEEEEEcccCCCCCCc
Confidence             69999988764 568999999999988763

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=2.2e-08  Score=76.05  Aligned_cols=77  Identities=13%  Similarity=0.207  Sum_probs=53.6

Q ss_pred             cCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhhhhhhhh-cCCCC
Q 043301          150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTLAQFILR-LQNSL  224 (244)
Q Consensus       150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~  224 (244)
                      ...|.++|.+|.+ |.+++.+|.+|||+++.         |.|.    .+++|++.-.+++|.|||   +|.|. +.+.+
T Consensus        13 ~~~L~V~V~~a~~-L~~~~~~~~~dpyVkv~---------l~~~~~~~~~~kT~~~~~t~~P~wne---~f~f~~~~~~~   79 (125)
T d2bwqa1          13 GHQLIVTILGAKD-LPSREDGRPRNPYVKIY---------FLPDRSDKNKRRTKTVKKTLEPKWNQ---TFIYSPVHRRE   79 (125)
T ss_dssp             TTEEEEEEEEEES-CCCCTTSCCBCEEEEEE---------EESSCSGGGEEECCCCSSBSSCEEEE---EEEECSCCGGG
T ss_pred             CCEEEEEEEEeEC-CCCcCCCCCCCEEEEEE---------EeCCCCCccccccCEEcCCCCCEEcc---EEEEeeeChhh
Confidence            4456699999984 89999999999998743         3222    334566444467788887   69997 55554


Q ss_pred             -ccceeEEEEeccCcc
Q 043301          225 -RSKNMSVEFWDLDDV  239 (244)
Q Consensus       225 -~~~~~~~~~~~~~~~  239 (244)
                       .++.|.|+|||.|+.
T Consensus        80 l~~~~L~i~v~d~~~~   95 (125)
T d2bwqa1          80 FRERMLEITLWDQARV   95 (125)
T ss_dssp             GGGCEEEEEEEEC---
T ss_pred             cCCCEEEEEEEECCCC
Confidence             456799999999975

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=5.3e-08  Score=75.44  Aligned_cols=78  Identities=6%  Similarity=0.038  Sum_probs=57.3

Q ss_pred             cCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc---CCCCceeEeecCCCCChhhhhhhhhhcCCCC-c
Q 043301          150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET---GDQGSKVTISESYPYSDDTLAQFILRLQNSL-R  225 (244)
Q Consensus       150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~  225 (244)
                      .+.|.++|-+|.+ |   +.+|.+|||++         ..|.+.   ..++|++...+.+|.|||   .|.|.+...+ .
T Consensus        25 ~~~L~V~v~~a~~-L---~~~g~~dpyVk---------v~l~~~~~~~~~kT~v~~~~~~P~wne---~f~f~v~~~~l~   88 (138)
T d1wfma_          25 KAELFVTRLEAVT-S---NHDGGCDCYVQ---------GSVANRTGSVEAQTALKKRQLHTTWEE---GLVLPLAEEELP   88 (138)
T ss_dssp             TTEEEEEEEEEEC-C---CCSSCCCEEEE---------EEEEETTEEEEEECCCCCCCSSEECSS---CEEEECCTTSST
T ss_pred             CCEEEEEEEEcCC-C---CCCCCcCcEEE---------EEECCCCCccceeeeEECCCCCceEee---eEEEEeeehhcc
Confidence            5567789999975 4   55678999977         444443   234466444577888887   6999997765 5


Q ss_pred             cceeEEEEeccCcccccC
Q 043301          226 SKNMSVEFWDLDDVLVNV  243 (244)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~  243 (244)
                      ...|.|+|||+|+.++|-
T Consensus        89 ~~~L~~~V~d~~~~~~~~  106 (138)
T d1wfma_          89 TATLTLTLRTCDRFSRHS  106 (138)
T ss_dssp             TCEEEEEEEECCSSCTTS
T ss_pred             ceEEEEEEeeecccccce
Confidence            688999999999988873

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=98.31  E-value=1.9e-08  Score=78.04  Aligned_cols=74  Identities=9%  Similarity=0.151  Sum_probs=51.6

Q ss_pred             cceeeecccccccccC-----------CCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcC
Q 043301          153 EDLTFHDVFSSFTEKD-----------RNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQ  221 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~-----------~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  221 (244)
                      +.++|.+|.. |-|++           .+|+.|||++++         ++.....+|++...+.+|.|||   +|.|.+.
T Consensus         8 L~v~I~~A~~-L~~~~~~~~~~~~~~~~~~~~DPYv~v~---------l~~~~~~~T~~~~~t~~P~Wne---~f~f~v~   74 (136)
T d1gmia_           8 LKIKICEAVS-LKPTAWSLRDAVGPRPQTFLLDPYIALN---------VDDSRIGQTATKQKTNSPAWHD---EFVTDVC   74 (136)
T ss_dssp             EEEEEEEEES-CCCCHHHHCC-CCSSCCCCCCCEEEEEE---------ETTEEEEECCCCSSCSSCEEEE---EEEEEEE
T ss_pred             EEEEEEEeEC-CCcccccccccccccCCCCCcCcEEEEE---------eCCCcCcEeeEEcCCCCccCcc---EEEEEEe
Confidence            4466777763 66654           678899998743         4433333455334466888888   6999885


Q ss_pred             CCCccceeEEEEeccCccccc
Q 043301          222 NSLRSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~  242 (244)
                      +   .+.|.|+|||+|..++|
T Consensus        75 ~---~~~l~i~V~d~~~~~~d   92 (136)
T d1gmia_          75 N---GRKIELAVFHDAPIGYD   92 (136)
T ss_dssp             E---ECEEEEEEEECCSSSSC
T ss_pred             c---CCceEEEEEEecCCCCc
Confidence            4   47899999999998765

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.19  E-value=8.9e-08  Score=73.47  Aligned_cols=75  Identities=17%  Similarity=0.151  Sum_probs=47.2

Q ss_pred             cceeeecccccc--cccCCCCcchhhHHHHhhhhcccccccc----cCCCCceeEee-c-CCCCChhhhhhhhhhcCCCC
Q 043301          153 EDLTFHDVFSSF--TEKDRNQLDDITENIESEIAGIKKTLSE----TGDQGSKVTIS-E-SYPYSDDTLAQFILRLQNSL  224 (244)
Q Consensus       153 ~~~~v~~~~~~~--~~~~~n~l~d~~~~~~~~~~~~~~~l~~----~~~~~~~~~i~-~-~~~~~~~~~~~~~~~~~~~~  224 (244)
                      +.++|-+|.+ |  ..+|.+|.+|||++++         |..    ..+.+|+ +|. + .+|.|||   +|.|.+...+
T Consensus         6 l~V~Vi~a~~-L~~~~~~~~~~~DPyV~v~---------l~g~~~~~~~~~T~-~v~~~~~nP~wne---~f~f~~~~~~   71 (131)
T d1qasa2           6 LRVRIISGQQ-LPKVNKNKNSIVDPKVIVE---------IHGVGRDTGSRQTA-VITNNGFNPRWDM---EFEFEVTVPD   71 (131)
T ss_dssp             EEEEEEEEES-CCCCC-----CCCEEEEEE---------EESSTTTCEEEECC-CCSSCSSSCEEEE---EEEEEESCGG
T ss_pred             EEEEEEEeeC-CCCCCCCCCCCcCeEEEEE---------EccCCCCcEEEEEE-EEecccCCceEEE---EEEEEEEcch
Confidence            4578888875 5  3467899999998744         321    1223444 343 3 4788877   6999887654


Q ss_pred             ccceeEEEEeccCccccc
Q 043301          225 RSKNMSVEFWDLDDVLVN  242 (244)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~  242 (244)
                      . .-|.|+|||+|..++|
T Consensus        72 ~-~~L~~~V~D~d~~~~d   88 (131)
T d1qasa2          72 L-ALVRFMVEDYDSSSKN   88 (131)
T ss_dssp             G-CEEEEEEEECCTTTCC
T ss_pred             h-ceEEEEEEEecCCCCC
Confidence            4 3589999999998765

>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus) [TaxId: 10117]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Protein kinase c-gamma
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=98.18  E-value=1.1e-06  Score=60.19  Aligned_cols=58  Identities=26%  Similarity=0.483  Sum_probs=47.2

Q ss_pred             CCCCCCCcceEeec-CcccccccccCCCCe---eEEcCCccceeccccccCcCccccCccccCC
Q 043301           68 DHPFHCHPLTLSKT-NHHRCDACLDECSGM---AYRCHECCYNLHYHCTALKPSINFKELKCVL  127 (244)
Q Consensus        68 ~hp~H~H~L~L~~~-~~~~Cd~Cg~~~~g~---~Y~C~~Cd~~lH~~Ca~~p~~i~~~~~~h~~  127 (244)
                      +.|..+|.|...+. .++.|++|++.+.|+   +|+|..|++.+|..|+...+.-  ++++...
T Consensus         3 d~p~~~H~F~~~~~~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~v~~~--C~~~~~~   64 (66)
T d1tbna_           3 DDPRNKHKFRLHSYSSPTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRSVPSL--CGVDHTE   64 (66)
T ss_dssp             CCCCCSCCEEECCSSSCCBCSSSCCBCCTTSSSCEEETTTCCEECTTTTTTSCCC--SSCCCCC
T ss_pred             CCCCCCCceEEEeCCCCcCCcCCCCcccCcccCccccCcccCeEChHHhcccccc--CCCCccc
Confidence            34556899988876 789999999988775   5999999999999999888665  6665543

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.17  E-value=2.1e-07  Score=71.16  Aligned_cols=70  Identities=7%  Similarity=0.108  Sum_probs=44.6

Q ss_pred             eeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEEEe
Q 043301          155 LTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEFW  234 (244)
Q Consensus       155 ~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (244)
                      +++.++-   -..++.|.+|||+++.     ++..+...+++.|++.-.+++|.|||   +|.|.+..   .++|.|.||
T Consensus         9 ~~~~~~~---~~~~~~~~~dPY~~v~-----l~~~~~~~~~~~t~~~kkT~nP~WnE---~F~~~v~~---~~~l~i~V~   74 (123)
T d1bdya_           9 FNSYELG---SLQAEDDASQPFCAVK-----MKEALTTDRGKTLVQKKPTMYPEWKS---TFDAHIYE---GRVIQIVLM   74 (123)
T ss_dssp             EEEEECC---TTCCCCCSCCCEEEEE-----EEEECCGGGTTBEEECSCCBCCCTTC---EEEEECCT---TCEEEEEEE
T ss_pred             EEEeecc---cCCCCCCCCCCEEEEE-----EcCccccccceEEEEeCCCCCcccce---EEEEEEcc---ccEEEEEEE
Confidence            4444442   3345688899998744     11222222334455334477899988   69998865   368999999


Q ss_pred             ccCc
Q 043301          235 DLDD  238 (244)
Q Consensus       235 ~~~~  238 (244)
                      |||.
T Consensus        75 d~dd   78 (123)
T d1bdya_          75 RAAE   78 (123)
T ss_dssp             EETT
T ss_pred             Eccc
Confidence            9974

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=3e-08  Score=75.12  Aligned_cols=77  Identities=13%  Similarity=0.114  Sum_probs=51.5

Q ss_pred             CCcceeeecccccccc---cCCCCcchhhHHHHhhhhcccccccccC--CCCceeEeecCCCCChhhhhhhhhhcCCCCc
Q 043301          151 NPEDLTFHDVFSSFTE---KDRNQLDDITENIESEIAGIKKTLSETG--DQGSKVTISESYPYSDDTLAQFILRLQNSLR  225 (244)
Q Consensus       151 ~~~~~~v~~~~~~~~~---~~~n~l~d~~~~~~~~~~~~~~~l~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  225 (244)
                      +.|.++|-+|.+ |-.   .|..|..|||+++         .+.+..  ..+|++.-.+.+|.|||   +|.|.+.+ ..
T Consensus         3 ~~l~V~v~~a~~-L~~~~~~d~~~~~Dpyv~v---------~l~~~~~~~~~T~~~~~t~nP~wne---~f~f~i~~-~~   68 (126)
T d1rlwa_           3 HKFTVVVLRATK-VTKGAFGDMLDTPDPYVEL---------FISTTPDSRKRTRHFNNDINPVWNE---TFEFILDP-NQ   68 (126)
T ss_dssp             EEEEEEEEEEES-CCSCHHHHHHCCCCEEEEE---------ECTTSTTCCEECCCCTTCSSCEEEE---EEEEEECT-TS
T ss_pred             cEEEEEEEEccC-CCCccccccCCCCCcEEEE---------EECCcccceeEeeecCCCccceece---eeeecccC-cc
Confidence            345688888875 432   4567789999773         344432  33455323477788877   69998853 34


Q ss_pred             cceeEEEEeccCcccc
Q 043301          226 SKNMSVEFWDLDDVLV  241 (244)
Q Consensus       226 ~~~~~~~~~~~~~~~~  241 (244)
                      ...|.|+|||+|+.+.
T Consensus        69 ~~~L~v~V~d~d~~~d   84 (126)
T d1rlwa_          69 ENVLEITLMDANYVMD   84 (126)
T ss_dssp             CCEEEEEEEECCSSCC
T ss_pred             cCcEEEEEEECCCCCC
Confidence            5579999999998754

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.4e-07  Score=72.79  Aligned_cols=75  Identities=7%  Similarity=0.040  Sum_probs=51.7

Q ss_pred             CcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEE
Q 043301          152 PEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSV  231 (244)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (244)
                      .+.++|-+|. .+...+..+-.|||++++         +..+ ..+|++.-.+.+|.|||   .|.|.+.+.+   .|.|
T Consensus         7 ~L~v~v~~A~-~~~~~~~~~~~dpyv~v~---------~~~~-~~kT~v~~~t~nP~wne---~f~f~~~~~~---~l~~   69 (133)
T d2nq3a1           7 QLQITVISAK-LKENKKNWFGPSPYVEVT---------VDGQ-SKKTEKCNNTNSPKWKQ---PLTVIVTPVS---KLHF   69 (133)
T ss_dssp             EEEEEEEEEE-ECCCC--CCCCCEEEEEE---------ETTE-EEECCCCSSCSSCEEEE---EEEEEECTTC---EEEE
T ss_pred             EEEEEEEEeE-CCCcCCCCCCcCeEEEEE---------ECCe-EEeeEEEEecccEEEcc---eEEEEEEecc---eeEE
Confidence            4568889987 455556666789998744         3332 23455333367888887   6999987653   6999


Q ss_pred             EEeccCcccccC
Q 043301          232 EFWDLDDVLVNV  243 (244)
Q Consensus       232 ~~~~~~~~~~~~  243 (244)
                      +|||+|..++|.
T Consensus        70 ~V~d~d~~~~d~   81 (133)
T d2nq3a1          70 RVWSHQTLKSDV   81 (133)
T ss_dssp             EEEECCSSSCCE
T ss_pred             EEEEccCCCCCc
Confidence            999999988763

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.08  E-value=2e-07  Score=71.91  Aligned_cols=68  Identities=9%  Similarity=0.145  Sum_probs=50.3

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE  232 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (244)
                      |.++|.+|. +|.++|   ..|||+.++         +. ..+++|+ ++++++|.|||   .|.|.+...  +..|.|+
T Consensus         4 L~V~v~~a~-~l~~~~---~~dpYv~l~---------~~-~~k~~T~-~~k~~nP~Wne---~f~f~v~~~--~~~L~v~   63 (128)
T d2cjta1           4 LCVGVKKAK-FDGAQE---KFNTYVTLK---------VQ-NVKSTTI-AVRGSQPSWEQ---DFMFEINRL--DLGLTVE   63 (128)
T ss_dssp             EEEEEEEEE-CSSCGG---GCEEEEEEE---------ET-TEEEECC-CEESSSCEEEE---EEEEEECCC--SSEEEEE
T ss_pred             EEEEEEEEE-CCCCCC---CcCeEEEEE---------eC-CEEEEEE-EecCCCCeEEE---EEEEeeccc--cceEEEE
Confidence            458899998 578877   579998754         22 2245555 55677888888   699998654  5789999


Q ss_pred             EeccCccc
Q 043301          233 FWDLDDVL  240 (244)
Q Consensus       233 ~~~~~~~~  240 (244)
                      |||||..+
T Consensus        64 V~d~~~~~   71 (128)
T d2cjta1          64 VWNKGLIW   71 (128)
T ss_dssp             EEECCSSC
T ss_pred             EEeCCCcC
Confidence            99999754

>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus) [TaxId: 10117]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Protein kinase c-gamma
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=97.82  E-value=8.1e-06  Score=55.66  Aligned_cols=46  Identities=24%  Similarity=0.582  Sum_probs=37.3

Q ss_pred             CCCCCCEeeeeccCCCcccccccccccCCCCC---cEEeCCCCCccccccccCC
Q 043301           14 SHMHYLIFNENEVGHDDVVIICDICETSLQGP---AYGCGTCEFSIHKSCAELP   64 (244)
Q Consensus        14 sHpH~L~L~~~~~~~~~~~~~C~~C~~~i~g~---~Y~C~~C~F~lH~~Ca~~p   64 (244)
                      ..+|.|.. ..    ...+.+|+.|+..|||+   +|+|..|++.+|+.|+...
T Consensus         6 ~~~H~F~~-~~----~~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~v   54 (66)
T d1tbna_           6 RNKHKFRL-HS----YSSPTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRSV   54 (66)
T ss_dssp             CCSCCEEE-CC----SSSCCBCSSSCCBCCTTSSSCEEETTTCCEECTTTTTTS
T ss_pred             CCCCceEE-Ee----CCCCcCCcCCCCcccCcccCccccCcccCeEChHHhccc
Confidence            34588877 22    34578999999999985   7999999999999999863

>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: RAF-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=1.2e-05  Score=52.34  Aligned_cols=43  Identities=26%  Similarity=0.603  Sum_probs=35.5

Q ss_pred             CCCCEeeeeccCCCcccccccccccCCCCCcEEeCCCCCccccccccCC
Q 043301           16 MHYLIFNENEVGHDDVVIICDICETSLQGPAYGCGTCEFSIHKSCAELP   64 (244)
Q Consensus        16 pH~L~L~~~~~~~~~~~~~C~~C~~~i~g~~Y~C~~C~F~lH~~Ca~~p   64 (244)
                      .|.|+. ..    ...+.+|+.|++.|+ .+|+|..|++.+|++|+...
T Consensus         3 ~H~F~~-~~----f~~~~~C~~C~~~i~-~g~~C~~C~~~~H~~C~~~v   45 (52)
T d1faqa_           3 THNFAR-KT----FLKLAFCDICQKFLL-NGFRCQTCGYKFHEHCSTKV   45 (52)
T ss_dssp             CCCCEE-EC----CSSCEECTTSSSEEC-SEEECTTTTCCBCSTTSSSS
T ss_pred             ceEEEE-ee----CCCCcCCccCCCccc-cCCCcCCCCChhhhhhhccc
Confidence            478877 22    356789999999997 57999999999999999853

>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Beta-chimaerin, middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=1.3e-05  Score=53.92  Aligned_cols=45  Identities=20%  Similarity=0.484  Sum_probs=36.8

Q ss_pred             CCCCCEeeeeccCCCcccccccccccCCCCC---cEEeCCCCCccccccccCC
Q 043301           15 HMHYLIFNENEVGHDDVVIICDICETSLQGP---AYGCGTCEFSIHKSCAELP   64 (244)
Q Consensus        15 HpH~L~L~~~~~~~~~~~~~C~~C~~~i~g~---~Y~C~~C~F~lH~~Ca~~p   64 (244)
                      -+|.|+. ..    ...+.+|+.|.+.|||+   +|+|..|++..|++|+...
T Consensus         3 k~H~F~~-~~----~~~pt~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~v   50 (62)
T d1xa6a3           3 KTHNFKV-HT----FRGPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHV   50 (62)
T ss_dssp             CCCCCCE-EC----CSSCCBCTTTCCBCCTTTTCEECCSSSCCCBCTGGGTTS
T ss_pred             CCCEEEE-ee----CCCCCCCcccCccccccccCeEEcCCCCchhhHHHHhhC
Confidence            3588877 22    24578999999999974   7999999999999998763

>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: RAF-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1.4e-05  Score=52.04  Aligned_cols=45  Identities=27%  Similarity=0.629  Sum_probs=38.5

Q ss_pred             CCCcceEeec-CcccccccccCCCCeeEEcCCccceeccccccCcCc
Q 043301           72 HCHPLTLSKT-NHHRCDACLDECSGMAYRCHECCYNLHYHCTALKPS  117 (244)
Q Consensus        72 H~H~L~L~~~-~~~~Cd~Cg~~~~g~~Y~C~~Cd~~lH~~Ca~~p~~  117 (244)
                      ..|.|+..+. .++.|++|++.+. .+|+|..|++.+|.+|+...|.
T Consensus         2 ~~H~F~~~~f~~~~~C~~C~~~i~-~g~~C~~C~~~~H~~C~~~v~~   47 (52)
T d1faqa_           2 TTHNFARKTFLKLAFCDICQKFLL-NGFRCQTCGYKFHEHCSTKVPT   47 (52)
T ss_dssp             CCCCCEEECCSSCEECTTSSSEEC-SEEECTTTTCCBCSTTSSSSSS
T ss_pred             CceEEEEeeCCCCcCCccCCCccc-cCCCcCCCCChhhhhhhccccc
Confidence            3688888877 7899999999874 5799999999999999987754

>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Protein kinase C-delta (PKCdelta)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=1.4e-05  Score=51.47  Aligned_cols=34  Identities=29%  Similarity=0.685  Sum_probs=30.7

Q ss_pred             cccccccccccCCCCC---cEEeCCCCCccccccccC
Q 043301           30 DVVIICDICETSLQGP---AYGCGTCEFSIHKSCAEL   63 (244)
Q Consensus        30 ~~~~~C~~C~~~i~g~---~Y~C~~C~F~lH~~Ca~~   63 (244)
                      ..+.+|+.|.+.|+|.   +|+|..|++..|.+|...
T Consensus         9 ~~~~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~   45 (50)
T d1ptqa_           9 MSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK   45 (50)
T ss_dssp             SSCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred             CCCcCCcccCCcccCcccCcEECCCCCCeeChhHccc
Confidence            5678999999999984   799999999999999875

>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Beta-chimaerin, middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=2.6e-05  Score=52.39  Aligned_cols=46  Identities=26%  Similarity=0.636  Sum_probs=39.0

Q ss_pred             CCcceEeec-CcccccccccCCCCe---eEEcCCccceeccccccCcCcc
Q 043301           73 CHPLTLSKT-NHHRCDACLDECSGM---AYRCHECCYNLHYHCTALKPSI  118 (244)
Q Consensus        73 ~H~L~L~~~-~~~~Cd~Cg~~~~g~---~Y~C~~Cd~~lH~~Ca~~p~~i  118 (244)
                      +|.|...+. .++.|++|++.+.|+   +|+|..|++..|..|....+.-
T Consensus         4 ~H~F~~~~~~~pt~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~v~~~   53 (62)
T d1xa6a3           4 THNFKVHTFRGPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHVPND   53 (62)
T ss_dssp             CCCCCEECCSSCCBCTTTCCBCCTTTTCEECCSSSCCCBCTGGGTTSCSC
T ss_pred             CCEEEEeeCCCCCCCcccCccccccccCeEEcCCCCchhhHHHHhhCCCc
Confidence            588877766 789999999988664   6999999999999999877554

>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Kinase suppressor of Ras, Ksr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.61  E-value=2.8e-05  Score=50.13  Aligned_cols=43  Identities=21%  Similarity=0.537  Sum_probs=34.7

Q ss_pred             CCcceEeecCcccccccccCCCCeeEEcCCccceeccccccCcC
Q 043301           73 CHPLTLSKTNHHRCDACLDECSGMAYRCHECCYNLHYHCTALKP  116 (244)
Q Consensus        73 ~H~L~L~~~~~~~Cd~Cg~~~~g~~Y~C~~Cd~~lH~~Ca~~p~  116 (244)
                      .|.|+..++.+..|+.|++.+. .+|+|..|++..|.+|+...|
T Consensus         4 ~H~F~~~~~~~~tC~~C~~~l~-qg~~C~~C~~~~Hk~C~~~~P   46 (49)
T d1kbea_           4 THRFSTKSWLSQVCNVCQKSMI-FGVKCKHCRLKCHNKCTKEAP   46 (49)
T ss_dssp             CCCEEEECCSSCCCSSSCCSSC-CEEEETTTTEEESSSCTTTSC
T ss_pred             ccEEeecCcCCCCchhhchhhh-CcCCcCCCCChHhHhhcccCC
Confidence            5777665553334999999885 689999999999999998765

>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Protein kinase C-delta (PKCdelta)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.49  E-value=2.7e-05  Score=50.01  Aligned_cols=43  Identities=23%  Similarity=0.559  Sum_probs=35.9

Q ss_pred             CcceEeec-CcccccccccCCCCe---eEEcCCccceeccccccCcC
Q 043301           74 HPLTLSKT-NHHRCDACLDECSGM---AYRCHECCYNLHYHCTALKP  116 (244)
Q Consensus        74 H~L~L~~~-~~~~Cd~Cg~~~~g~---~Y~C~~Cd~~lH~~Ca~~p~  116 (244)
                      |.|+..+. .++.|++|++.+.|.   +|+|..|++..|.+|....+
T Consensus         1 H~F~~~~~~~~~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~   47 (50)
T d1ptqa_           1 HRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVA   47 (50)
T ss_dssp             CCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTTSC
T ss_pred             CceEEecCCCCcCCcccCCcccCcccCcEECCCCCCeeChhHccccc
Confidence            56666665 789999999988764   69999999999999987663

>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Kinase suppressor of Ras, Ksr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.36  E-value=5.7e-05  Score=48.59  Aligned_cols=41  Identities=20%  Similarity=0.522  Sum_probs=32.1

Q ss_pred             CCCEeeeeccCCCcccccccccccCCCCCcEEeCCCCCccccccccCC
Q 043301           17 HYLIFNENEVGHDDVVIICDICETSLQGPAYGCGTCEFSIHKSCAELP   64 (244)
Q Consensus        17 H~L~L~~~~~~~~~~~~~C~~C~~~i~g~~Y~C~~C~F~lH~~Ca~~p   64 (244)
                      |.|+. ..    ...++ |+.|+..|| .+|+|..|++.+|++|+...
T Consensus         5 H~F~~-~~----~~~~t-C~~C~~~l~-qg~~C~~C~~~~Hk~C~~~~   45 (49)
T d1kbea_           5 HRFST-KS----WLSQV-CNVCQKSMI-FGVKCKHCRLKCHNKCTKEA   45 (49)
T ss_dssp             CCEEE-EC----CSSCC-CSSSCCSSC-CEEEETTTTEEESSSCTTTS
T ss_pred             cEEee-cC----cCCCC-chhhchhhh-CcCCcCCCCChHhHhhcccC
Confidence            66654 21    23344 999999997 68999999999999999753

>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 3, ZZZ3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00015  Score=49.85  Aligned_cols=46  Identities=26%  Similarity=0.566  Sum_probs=36.4

Q ss_pred             cccccccccC-CCCCcEEeCCC----CCccccccccCCCcCCCCCC--CCcceEe
Q 043301           32 VIICDICETS-LQGPAYGCGTC----EFSIHKSCAELPLKIDHPFH--CHPLTLS   79 (244)
Q Consensus        32 ~~~C~~C~~~-i~g~~Y~C~~C----~F~lH~~Ca~~p~~i~hp~H--~H~L~L~   79 (244)
                      ...|++|+.. |.|.+|+|..|    +|+|+..|......  ...|  .|+|+..
T Consensus        14 ~~~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~~~~~--~~~H~~~H~~~~I   66 (69)
T d2fc7a1          14 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHE--TDIHKEDHQLEPI   66 (69)
T ss_dssp             SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCC--CSSCCSSSCEEEE
T ss_pred             CeEcCCCCCcCcCCcccCCCCCCCCCCccchHHhhcCccc--CCCCCCCCCEEEe
Confidence            4689999886 79999999999    89999999865532  3345  6887764

>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00017  Score=51.51  Aligned_cols=43  Identities=28%  Similarity=0.771  Sum_probs=33.3

Q ss_pred             cccccccccc-CCCCCcEEeCCC-CCccccccccCCCcCCCCCC-CCcceEe
Q 043301           31 VVIICDICET-SLQGPAYGCGTC-EFSIHKSCAELPLKIDHPFH-CHPLTLS   79 (244)
Q Consensus        31 ~~~~C~~C~~-~i~g~~Y~C~~C-~F~lH~~Ca~~p~~i~hp~H-~H~L~L~   79 (244)
                      ....|++|+. +|.|..|+|..| +|+|+..|...      ..| .|+|.+.
T Consensus        23 ~~v~Cd~C~~~~i~G~Ry~C~~C~dyDLC~~C~~~------~~h~~H~f~~~   68 (85)
T d2dipa1          23 LGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDS------YCHLSHTFTFR   68 (85)
T ss_dssp             CCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHT------TSGGGSCEEEC
T ss_pred             CCeECCCCCCCCcCcceEEcCCCCCccchHHHHCc------CCCCCCCccee
Confidence            3468999976 589999999999 79999999753      223 5776654

>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: CREB-binding protein, CBP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.85  E-value=7.6e-05  Score=48.63  Aligned_cols=40  Identities=18%  Similarity=0.579  Sum_probs=32.0

Q ss_pred             ccccccccCCCCCcEEeCCC-CCccccccccCCCcCCCCCCCCcceEe
Q 043301           33 IICDICETSLQGPAYGCGTC-EFSIHKSCAELPLKIDHPFHCHPLTLS   79 (244)
Q Consensus        33 ~~C~~C~~~i~g~~Y~C~~C-~F~lH~~Ca~~p~~i~hp~H~H~L~L~   79 (244)
                      ..|++|...| |.+|+|.+| +|+|+..|...      ..|.|+|.-.
T Consensus         7 ~tCd~C~~~i-~~Ry~C~~C~DfDLC~~C~~~------~~H~H~m~k~   47 (52)
T d1tota1           7 YTCNECKHHV-ETRWHCTVCEDYDLCINCYNT------KSHTHKMVKW   47 (52)
T ss_dssp             EEETTTTEEE-SSEEEESSSSSCEECHHHHHH------HCCCSSEEEE
T ss_pred             EECcCCCCcC-CCceECCCCCCcccHHHHhcC------CCcCCCeEEe
Confidence            5699999887 789999999 69999999753      2467877653

>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 3, ZZZ3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00063  Score=46.50  Aligned_cols=34  Identities=24%  Similarity=0.679  Sum_probs=30.1

Q ss_pred             CcccccccccC-CCCeeEEcCCc----cceeccccccCc
Q 043301           82 NHHRCDACLDE-CSGMAYRCHEC----CYNLHYHCTALK  115 (244)
Q Consensus        82 ~~~~Cd~Cg~~-~~g~~Y~C~~C----d~~lH~~Ca~~p  115 (244)
                      ....||.|++. +.|.+|+|..|    ||+|+..|....
T Consensus        13 ~~~~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~~~   51 (69)
T d2fc7a1          13 VGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCL   51 (69)
T ss_dssp             SSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCC
T ss_pred             CCeEcCCCCCcCcCCcccCCCCCCCCCCccchHHhhcCc
Confidence            46789999997 79999999999    899999998655

>d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Diacylglycerol kinase delta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00053  Score=48.56  Aligned_cols=43  Identities=26%  Similarity=0.495  Sum_probs=34.6

Q ss_pred             CCCCEeeeeccCCCcccccccccccCCCCC----cEEeCCCCCccccccccC
Q 043301           16 MHYLIFNENEVGHDDVVIICDICETSLQGP----AYGCGTCEFSIHKSCAEL   63 (244)
Q Consensus        16 pH~L~L~~~~~~~~~~~~~C~~C~~~i~g~----~Y~C~~C~F~lH~~Ca~~   63 (244)
                      +|.++. .+    ...+.+|+.|.+.|+|.    +|+|..|++.+|++|...
T Consensus        27 ~H~w~~-~n----~~~~~~C~~C~~~i~~~~~~qg~~C~~C~~~~H~~C~~~   73 (84)
T d1r79a_          27 PHQWLE-GN----LPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKES   73 (84)
T ss_dssp             CCCEEE-SC----CCTTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHH
T ss_pred             CceEEe-CC----CCCCCCCcccCcccCCccccCcEecCcCCchhhhhhcCC
Confidence            477655 11    35678999999999763    699999999999999875

>d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Diacylglycerol kinase delta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00052  Score=48.60  Aligned_cols=46  Identities=20%  Similarity=0.429  Sum_probs=37.2

Q ss_pred             CCcceEeec-CcccccccccCCCCe----eEEcCCccceeccccccCcCcc
Q 043301           73 CHPLTLSKT-NHHRCDACLDECSGM----AYRCHECCYNLHYHCTALKPSI  118 (244)
Q Consensus        73 ~H~L~L~~~-~~~~Cd~Cg~~~~g~----~Y~C~~Cd~~lH~~Ca~~p~~i  118 (244)
                      +|.|.-..+ .+.+|++|++.+.|.    .|+|..|++.+|..|....+..
T Consensus        27 ~H~w~~~n~~~~~~C~~C~~~i~~~~~~qg~~C~~C~~~~H~~C~~~v~~~   77 (84)
T d1r79a_          27 PHQWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESLLTK   77 (84)
T ss_dssp             CCCEEESCCCTTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHCCSC
T ss_pred             CceEEeCCCCCCCCCcccCcccCCccccCcEecCcCCchhhhhhcCCCCCc
Confidence            577776555 788999999987542    5999999999999999876543

>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.00058  Score=48.63  Aligned_cols=34  Identities=29%  Similarity=0.648  Sum_probs=29.2

Q ss_pred             CcccccccccC-CCCeeEEcCCc-cceeccccccCc
Q 043301           82 NHHRCDACLDE-CSGMAYRCHEC-CYNLHYHCTALK  115 (244)
Q Consensus        82 ~~~~Cd~Cg~~-~~g~~Y~C~~C-d~~lH~~Ca~~p  115 (244)
                      ....|+.|+.. +.|.+|+|..| ||+++..|....
T Consensus        23 ~~v~Cd~C~~~~i~G~Ry~C~~C~dyDLC~~C~~~~   58 (85)
T d2dipa1          23 LGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSY   58 (85)
T ss_dssp             CCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTT
T ss_pred             CCeECCCCCCCCcCcceEEcCCCCCccchHHHHCcC
Confidence            34689999985 89999999999 899999997543

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.001  Score=49.75  Aligned_cols=74  Identities=12%  Similarity=0.123  Sum_probs=38.5

Q ss_pred             cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEee--cCCCCChhhhhhhhhh-cCCCCcccee
Q 043301          153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTIS--ESYPYSDDTLAQFILR-LQNSLRSKNM  229 (244)
Q Consensus       153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~-~~~~~~~~~~  229 (244)
                      +.++|-.|.. |-++    -.|||++++  +-++.  .+...+.+|++++.  ..||.|||.  .|.|- ....+ -.-|
T Consensus         3 l~V~Visaq~-L~~~----~~dPyV~V~--l~g~~--~D~~~~~~t~~~~~~n~~nP~wne~--~~~~~~~~~~~-l~~L   70 (122)
T d2zkmx2           3 LSITVISGQF-LSER----SVRTYVEVE--LFGLP--GDPKRRYRTKLSPSTNSINPVWKEE--PFVFEKILMPE-LASL   70 (122)
T ss_dssp             EEEEEEEEES-CCSS----CCCEEEEEE--EECCT--TSCCCCEECCCCSSSCCSSCBCCCC--CEEEEEESSGG-GCEE
T ss_pred             EEEEEEEeeC-CCCC----CCCcEEEEE--EECcC--CCCCccEEEEEEEeCCeecceEccc--EeEEEecCCCc-ccEE
Confidence            4466777763 4332    378998854  11110  11122333443333  468999872  34332 22222 2468


Q ss_pred             EEEEeccCc
Q 043301          230 SVEFWDLDD  238 (244)
Q Consensus       230 ~~~~~~~~~  238 (244)
                      .+.|||+|.
T Consensus        71 ~f~V~D~d~   79 (122)
T d2zkmx2          71 RVAVMEEGN   79 (122)
T ss_dssp             EEEEEETTT
T ss_pred             EEEEECCCC
Confidence            999999974

>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: CREB-binding protein, CBP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.85  E-value=0.0027  Score=40.93  Aligned_cols=30  Identities=23%  Similarity=0.700  Sum_probs=26.0

Q ss_pred             ccccccccCCCCeeEEcCCc-cceeccccccC
Q 043301           84 HRCDACLDECSGMAYRCHEC-CYNLHYHCTAL  114 (244)
Q Consensus        84 ~~Cd~Cg~~~~g~~Y~C~~C-d~~lH~~Ca~~  114 (244)
                      +.||.|++.+ |.+|+|..| ||+++..|...
T Consensus         7 ~tCd~C~~~i-~~Ry~C~~C~DfDLC~~C~~~   37 (52)
T d1tota1           7 YTCNECKHHV-ETRWHCTVCEDYDLCINCYNT   37 (52)
T ss_dssp             EEETTTTEEE-SSEEEESSSSSCEECHHHHHH
T ss_pred             EECcCCCCcC-CCceECCCCCCcccHHHHhcC
Confidence            4699999876 789999999 89999999753

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.29  E-value=0.28  Score=30.23  Aligned_cols=32  Identities=22%  Similarity=0.540  Sum_probs=26.2

Q ss_pred             cccccccCCC-CCcEEeCCCCCccccccccCCC
Q 043301           34 ICDICETSLQ-GPAYGCGTCEFSIHKSCAELPL   65 (244)
Q Consensus        34 ~C~~C~~~i~-g~~Y~C~~C~F~lH~~Ca~~p~   65 (244)
                      +|..|+.... +..-.|..|+-.+|..|...|.
T Consensus         2 ~C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~p~~   34 (51)
T d1f62a_           2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPAL   34 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTC
T ss_pred             CCcCcCCCCCCCCEEEcCCCCCCCCCCCCCCCC
Confidence            6889988763 4678899999999999998653

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.03  E-value=0.22  Score=34.80  Aligned_cols=35  Identities=26%  Similarity=0.640  Sum_probs=29.3

Q ss_pred             cccccccccccCC----CC-CcEEeCCCCCccccccccCC
Q 043301           30 DVVIICDICETSL----QG-PAYGCGTCEFSIHKSCAELP   64 (244)
Q Consensus        30 ~~~~~C~~C~~~i----~g-~~Y~C~~C~F~lH~~Ca~~p   64 (244)
                      .....|.+|++.|    .| .+-.|.+|+|-++..|.++-
T Consensus        14 ~~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYE   53 (93)
T d1weoa_          14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYE   53 (93)
T ss_dssp             CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHH
T ss_pred             cccchhhhcccccccCCCCCEEEEecccCCccchHHHHHH
Confidence            3457899999998    24 68999999999999998863