Citrus Sinensis ID: 043311
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 257 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SZL5 | 302 | Pentatricopeptide repeat- | no | no | 0.653 | 0.556 | 0.419 | 2e-34 | |
| Q8S8P6 | 624 | Pentatricopeptide repeat- | no | no | 0.587 | 0.241 | 0.360 | 2e-18 | |
| Q9M9X9 | 987 | Pentatricopeptide repeat- | no | no | 0.638 | 0.166 | 0.324 | 4e-18 | |
| P0C894 | 761 | Putative pentatricopeptid | no | no | 0.587 | 0.198 | 0.308 | 2e-17 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.610 | 0.211 | 0.309 | 1e-16 | |
| Q9LPX2 | 644 | Pentatricopeptide repeat- | no | no | 0.587 | 0.234 | 0.283 | 2e-16 | |
| O81028 | 799 | Pentatricopeptide repeat- | no | no | 0.521 | 0.167 | 0.347 | 3e-16 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.591 | 0.203 | 0.281 | 4e-16 | |
| Q9SI78 | 485 | Pentatricopeptide repeat- | no | no | 0.552 | 0.292 | 0.295 | 7e-16 | |
| Q8GYP6 | 860 | Pentatricopeptide repeat- | no | no | 0.599 | 0.179 | 0.296 | 8e-16 |
| >sp|Q9SZL5|PP356_ARATH Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana GN=At4g38150 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 109/174 (62%), Gaps = 6/174 (3%)
Query: 71 PRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
P + EIF KM+ GL NAV M D L KDGL EA++LF ++DKG +P+VV +TAV+E
Sbjct: 115 PEDSDEIFKKMKEGGLIPNAVAMLDGLCKDGLVQEAMKLFGLMRDKGTIPEVVIYTAVVE 174
Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
A+ A + ++A R+F +M +G+APNA++Y VL++GL N +L DA + EM+
Sbjct: 175 AFCKAHKIEDAKRIFRKMQNNGIAPNAFSYGVLVQGLY-----NCNMLDDAVAFCSEMLE 229
Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244
G PN T+ + +A R + V++A+ + + KGF + KAVKE +DKR
Sbjct: 230 SGHSPNVPTFVELVDALCRVKGVEQAQSAIDTLNQKGFAVNVKAVKE-FMDKRA 282
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 10/161 (6%)
Query: 80 KMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139
K+ T TN + D K+G EA +LF ++ KG P+ + + +I AY G+ K
Sbjct: 466 KLSTVSYTN----LIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIK 521
Query: 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
EA ++ M A+G+ P++YTY LI G A + + +A + EM KG+ N+ T
Sbjct: 522 EARKLRANMEANGMDPDSYTYTSLIHGECIADN-----VDEAMRLFSEMGLKGLDQNSVT 576
Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
YT + +A K DEA GL +MK KG+ D K V ALI
Sbjct: 577 YTVMISGLSKAGKSDEAFGLYDEMKRKGYTIDNK-VYTALI 616
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 91.7 bits (226), Expect = 4e-18, Method: Composition-based stats.
Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 15/179 (8%)
Query: 77 IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
+F +M+ GL + M D+ K GL +A + F ++++ G P+VV +TA+I AY
Sbjct: 505 LFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYL 564
Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-----------GNAKILGDAQ 182
A + A +F ML+ G PN TY+ LI G A +K + D
Sbjct: 565 KAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVD 624
Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
Y + RPN TY A+ + F ++ +V+EAR LL M +G P++ V +ALID
Sbjct: 625 MYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQ-IVYDALID 682
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Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 85/159 (53%), Gaps = 8/159 (5%)
Query: 76 EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
E + +M+ GL N V + DA K+G+ +A++ + ++ G +P+ +T++I+A
Sbjct: 353 EFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAN 412
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
G +A R+ ML GV N TY LI GL +A+ + +A++ +M G
Sbjct: 413 CKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLC-----DAERMKEAEELFGKMDTAG 467
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
+ PN +Y A+ FV+A+ +D A LL ++K +G PD
Sbjct: 468 VIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPD 506
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 8/165 (4%)
Query: 70 DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
D R + F++M + +T + + + + G EA +LF ++ KG PD V T
Sbjct: 366 DIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFT 425
Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
+I Y AG K+A RV M+ +G +PN TY LI GL D L A + L
Sbjct: 426 ELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGD-----LDSANELLH 480
Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
EM G++PN TY ++ ++ ++EA L+ + +A G D
Sbjct: 481 EMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNAD 525
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 8/159 (5%)
Query: 76 EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
E+ KM + +AVK + D L KDG A LF +++ KG D++ + +I +
Sbjct: 249 ELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGF 308
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
+AG+ + ++ M+ ++PN T++VLI L +A + L EM+ +G
Sbjct: 309 CNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGK-----LREADQLLKEMMQRG 363
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
+ PN TY ++ + F + +++EA ++ M +KG PD
Sbjct: 364 IAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPD 402
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O81028|PP171_ARATH Pentatricopeptide repeat-containing protein At2g26790, mitochondrial OS=Arabidopsis thaliana GN=At2g26790 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 85.5 bits (210), Expect = 3e-16, Method: Composition-based stats.
Identities = 49/141 (34%), Positives = 80/141 (56%), Gaps = 7/141 (4%)
Query: 94 FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
FDALSK G EA +L ++KD+G +PDV+ +T +I+ Y G+ +AL + M+ +G+
Sbjct: 395 FDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGM 454
Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
+P+ TY VL+ GL A +G+ + + + M +G +PNA T + + E A+KV
Sbjct: 455 SPDLITYNVLVSGL--ARNGHEE---EVLEIYERMKAEGPKPNAVTNSVIIEGLCFARKV 509
Query: 214 DEARGLLQQMKAKGFVPDEKA 234
EA ++ K P+ KA
Sbjct: 510 KEAEDFFSSLEQK--CPENKA 528
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 82/160 (51%), Gaps = 8/160 (5%)
Query: 76 EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
E +MR GL N + D S+ G +EA ++ ++ D G P VV + A+I +
Sbjct: 366 EFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGH 425
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
G+ ++A+ V M G++P+ +Y+ ++ G + D + +A + EMV KG
Sbjct: 426 CVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYD-----VDEALRVKREMVEKG 480
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
++P+ TY+++ + F ++ EA L ++M G PDE
Sbjct: 481 IKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDE 520
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 84.3 bits (207), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 24/166 (14%)
Query: 85 GLTNNAVKMFDALSKDGLTHEAL---QLFAQIKDKGH----------------MPDVVAH 125
GL N+AV++FD + +DG+ +A+ L A + G +P+V+
Sbjct: 188 GLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITF 247
Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
TAVI+ + G+ EA++++ M V P+ +TY LI GL + +A++ L
Sbjct: 248 TAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGR-----VDEAKQML 302
Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
MV KG P+ TY + F ++++VDE L ++M +G V D
Sbjct: 303 DLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGD 348
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 84.3 bits (207), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 8/162 (4%)
Query: 74 LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
+ ++ +M +G N V ++ + + +EA+ +F Q+++ G PD V + +I+
Sbjct: 383 INKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLID 442
Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
+A AG A+ ++ RM A G++P+ +TY+V+I L G A L A K EMV
Sbjct: 443 IHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCL-----GKAGHLPAAHKLFCEMVD 497
Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
+G PN TY + + +A+ A L + M+ GF PD+
Sbjct: 498 QGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDK 539
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Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 257 | ||||||
| 225450399 | 307 | PREDICTED: pentatricopeptide repeat-cont | 0.898 | 0.752 | 0.664 | 3e-86 | |
| 147828501 | 347 | hypothetical protein VITISV_015346 [Viti | 0.898 | 0.665 | 0.664 | 7e-86 | |
| 255578920 | 328 | pentatricopeptide repeat-containing prot | 0.957 | 0.75 | 0.673 | 1e-85 | |
| 238481201 | 363 | nucleobase:cation symporter-1, NCS1 fami | 0.918 | 0.650 | 0.686 | 8e-83 | |
| 7378643 | 482 | putative protein [Arabidopsis thaliana] | 0.918 | 0.489 | 0.686 | 1e-82 | |
| 297810441 | 478 | predicted protein [Arabidopsis lyrata su | 0.891 | 0.479 | 0.659 | 3e-82 | |
| 356575267 | 289 | PREDICTED: pentatricopeptide repeat-cont | 0.926 | 0.823 | 0.633 | 1e-81 | |
| 357442017 | 276 | Pentatricopeptide repeat-containing prot | 0.906 | 0.844 | 0.641 | 5e-78 | |
| 115467750 | 332 | Os06g0308200 [Oryza sativa Japonica Grou | 0.941 | 0.728 | 0.545 | 5e-69 | |
| 242077000 | 271 | hypothetical protein SORBIDRAFT_06g02710 | 0.929 | 0.881 | 0.565 | 3e-68 |
| >gi|225450399|ref|XP_002278276.1| PREDICTED: pentatricopeptide repeat-containing protein At4g38150-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 324 bits (830), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 166/250 (66%), Positives = 200/250 (80%), Gaps = 19/250 (7%)
Query: 21 RITNTRVNATLQRSL------------SSSSDQPTKKYVNTKSKLPPPYDPF-KKVVDEE 67
R+ NT VN+T + S S + + TK ++ KSKLPPPYDPF KK+ EE
Sbjct: 64 RLFNTGVNSTDRSSTKINFSPSDSDSDSETMIKKTKHEID-KSKLPPPYDPFSKKLAIEE 122
Query: 68 PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
P DP++LQ+IFHKMRTEGL NAVKMFDALSKDGLTHEA++LFAQIKD GHMPDVVAHTA
Sbjct: 123 PKDPKDLQDIFHKMRTEGLVPNAVKMFDALSKDGLTHEAMELFAQIKDHGHMPDVVAHTA 182
Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
VIEAYA+AGQ KEA++V+MRML SGV PNAYTY+VLIKGLA G+AK LG+A+KY++E
Sbjct: 183 VIEAYANAGQSKEAVKVYMRMLTSGVMPNAYTYSVLIKGLA----GDAK-LGEAKKYVLE 237
Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
M+GKGMRPNAGTYTA+FE F + QKV+E R L+QMKAKGF PDEKAV+E L ++RGQ F
Sbjct: 238 MMGKGMRPNAGTYTALFEGFAKEQKVEEGREFLEQMKAKGFTPDEKAVREILKNRRGQVF 297
Query: 248 RGVINILFGK 257
R +++ILFGK
Sbjct: 298 RSIMDILFGK 307
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147828501|emb|CAN77580.1| hypothetical protein VITISV_015346 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 322 bits (826), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 166/250 (66%), Positives = 199/250 (79%), Gaps = 19/250 (7%)
Query: 21 RITNTRVNATLQRS------------LSSSSDQPTKKYVNTKSKLPPPYDPF-KKVVDEE 67
R+ NT VN+T + S S + + TK ++ KSKLPPPYDPF KK EE
Sbjct: 104 RLFNTGVNSTDRSSTKINFSPSDSDSDSETMIKKTKHEID-KSKLPPPYDPFSKKPAIEE 162
Query: 68 PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
P DP++LQ+IFHKMRTEGL NAVKMFDALSKDGLTHEA++LFAQIKD GHMPDVVAHTA
Sbjct: 163 PKDPKDLQDIFHKMRTEGLVPNAVKMFDALSKDGLTHEAMELFAQIKDHGHMPDVVAHTA 222
Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
VIEAYA+AGQ KEA++V+MRML SGV PNAYTY+VLIKGLA G+AK LG+A+KY++E
Sbjct: 223 VIEAYANAGQSKEAVKVYMRMLTSGVMPNAYTYSVLIKGLA----GDAK-LGEAKKYVLE 277
Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
M+GKGMRPNAGTYTA+FE F + QKV+E R L+QMKAKGF PDEKAV+E L ++RGQ F
Sbjct: 278 MMGKGMRPNAGTYTALFEGFAKEQKVEEGREFLEQMKAKGFTPDEKAVREILKNRRGQVF 337
Query: 248 RGVINILFGK 257
R +++ILFGK
Sbjct: 338 RSIMDILFGK 347
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255578920|ref|XP_002530313.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223530169|gb|EEF32080.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 322 bits (825), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 173/257 (67%), Positives = 200/257 (77%), Gaps = 11/257 (4%)
Query: 7 LRWLLHSPSPKRSLR--ITNTRVN--ATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF-K 61
LR P+ ++ ITNT+VN + S S + +K K+KLPPPYDPF K
Sbjct: 77 LRSFCSKPTSEKETTKTITNTKVNFSLSDSDSDSDLDSEDSKNKEIDKTKLPPPYDPFNK 136
Query: 62 KVVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPD 121
K V EEP DP NLQ IFHKMR+EGL N+AVKMFDALSKDGLTHEAL+LF+QIK+KGHMPD
Sbjct: 137 KPVIEEPDDPNNLQLIFHKMRSEGLLNSAVKMFDALSKDGLTHEALELFSQIKNKGHMPD 196
Query: 122 VVAHTAVIEAYASA-GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGD 180
VVA+TAVIEAYA+A GQ KEAL+ FMRMLA+GVAPNAYTY VLIKGL A DG L D
Sbjct: 197 VVAYTAVIEAYANAGGQSKEALKAFMRMLAAGVAPNAYTYTVLIKGL--AGDGK---LAD 251
Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
A KY++EM+GKGMRPNAGTY+ VFEA+ +AQKVDEA+ LLQQMK KGFVP+EKAV+E L
Sbjct: 252 ANKYVLEMMGKGMRPNAGTYSTVFEAYAKAQKVDEAKLLLQQMKGKGFVPEEKAVREVLN 311
Query: 241 DKRGQGFRGVINILFGK 257
+KRGQ FR VINILF K
Sbjct: 312 NKRGQVFRTVINILFDK 328
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|238481201|ref|NP_001154694.1| nucleobase:cation symporter-1, NCS1 family [Arabidopsis thaliana] gi|332003244|gb|AED90627.1| nucleobase:cation symporter-1, NCS1 family [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 312 bits (800), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 169/246 (68%), Positives = 188/246 (76%), Gaps = 10/246 (4%)
Query: 18 RSLRITNTRVNATLQRSLSSS-SDQPTKKYVNTKSK----LPPPYDPF-KKVVDEEPTDP 71
R RVN + SLS SD+ T+ V SK PPPYDPF KK EEP DP
Sbjct: 122 RQFSSETKRVNTKVNFSLSDDDSDEETETQVTEDSKKQEPPPPPYDPFSKKPAIEEPEDP 181
Query: 72 RNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
+NLQEIFHKMRTEG TN AVKMFDALSKDG THEAL+LF+QIKDK MPDVVAHTA++EA
Sbjct: 182 KNLQEIFHKMRTEGFTNEAVKMFDALSKDGRTHEALELFSQIKDKNRMPDVVAHTAIVEA 241
Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
YA+AGQ KE L+VFMRMLASGV+PNAYTY+VLIKGL AADG K DA+KYL+EM+G
Sbjct: 242 YANAGQAKETLKVFMRMLASGVSPNAYTYSVLIKGL--AADG--KTHKDAKKYLLEMMGN 297
Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251
GM PNA TYTAVFEAFVR K + AR LLQ+MK KGFVPDEKAV+EAL KRGQ FR VI
Sbjct: 298 GMSPNAATYTAVFEAFVREGKEESARELLQEMKGKGFVPDEKAVREALEYKRGQVFRTVI 357
Query: 252 NILFGK 257
N+LF K
Sbjct: 358 NLLFDK 363
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7378643|emb|CAB83319.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 169/246 (68%), Positives = 188/246 (76%), Gaps = 10/246 (4%)
Query: 18 RSLRITNTRVNATLQRSLSSS-SDQPTKKYVNTKSK----LPPPYDPF-KKVVDEEPTDP 71
R RVN + SLS SD+ T+ V SK PPPYDPF KK EEP DP
Sbjct: 103 RQFSSETKRVNTKVNFSLSDDDSDEETETQVTEDSKKQEPPPPPYDPFSKKPAIEEPEDP 162
Query: 72 RNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
+NLQEIFHKMRTEG TN AVKMFDALSKDG THEAL+LF+QIKDK MPDVVAHTA++EA
Sbjct: 163 KNLQEIFHKMRTEGFTNEAVKMFDALSKDGRTHEALELFSQIKDKNRMPDVVAHTAIVEA 222
Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
YA+AGQ KE L+VFMRMLASGV+PNAYTY+VLIKGL AADG K DA+KYL+EM+G
Sbjct: 223 YANAGQAKETLKVFMRMLASGVSPNAYTYSVLIKGL--AADG--KTHKDAKKYLLEMMGN 278
Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251
GM PNA TYTAVFEAFVR K + AR LLQ+MK KGFVPDEKAV+EAL KRGQ FR VI
Sbjct: 279 GMSPNAATYTAVFEAFVREGKEESARELLQEMKGKGFVPDEKAVREALEYKRGQVFRTVI 338
Query: 252 NILFGK 257
N+LF K
Sbjct: 339 NLLFDK 344
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297810441|ref|XP_002873104.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297318941|gb|EFH49363.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 155/235 (65%), Positives = 180/235 (76%), Gaps = 6/235 (2%)
Query: 24 NTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF-KKVVDEEPTDPRNLQEIFHKMR 82
NT+VN +L S + P + LPPPYDPF KK+ E P DP+NLQEIFHKM+
Sbjct: 111 NTKVNFSLSDD-DSDEETPVTEDSGKPEFLPPPYDPFSKKLAIEGPEDPKNLQEIFHKMK 169
Query: 83 TEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEAL 142
TEG N AVKMFDALSKDG THEAL+LF+QIKDK MPDVVAHTA++EAYA+AGQ KEAL
Sbjct: 170 TEGFMNEAVKMFDALSKDGRTHEALELFSQIKDKNQMPDVVAHTAIVEAYANAGQAKEAL 229
Query: 143 RVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTA 202
+VFMRMLA GV+PNAYTY VLIKGLAA + + L DA+KYL+EM+G GM PN TYTA
Sbjct: 230 KVFMRMLACGVSPNAYTYTVLIKGLAA----DVRTLKDAKKYLLEMMGNGMSPNTATYTA 285
Query: 203 VFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257
VFEAFV+ +K + AR LLQ+MK GFVPDEKAV+EAL KRGQ FR V N+LF K
Sbjct: 286 VFEAFVKDEKEESARELLQEMKGNGFVPDEKAVREALQSKRGQVFRTVFNLLFDK 340
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356575267|ref|XP_003555763.1| PREDICTED: pentatricopeptide repeat-containing protein At4g38150-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 154/243 (63%), Positives = 189/243 (77%), Gaps = 5/243 (2%)
Query: 18 RSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK--VVDEEPTDPRNLQ 75
R T V+ + SLS + D+ K+ +K +PPPYDPF K V++ +DP++LQ
Sbjct: 49 RHFSSTKKPVDTKVNFSLSDTDDEDNKENGTSKKAVPPPYDPFSKKPAVEDPSSDPKDLQ 108
Query: 76 EIFHKMRT-EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
+IFH MRT +GL ++AVKMFDALSK+GLTHEAL+LFAQIKDKGHMPDVVAHTAV+EAYA+
Sbjct: 109 QIFHNMRTGDGLFSHAVKMFDALSKEGLTHEALELFAQIKDKGHMPDVVAHTAVLEAYAN 168
Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
A Q KEAL+V+MRMLASGV+PNAYTYAVLIKGLAAAAD K + +A KY++EM+ KGM+
Sbjct: 169 AAQPKEALKVYMRMLASGVSPNAYTYAVLIKGLAAAAD--VKFVKEASKYVLEMMDKGMK 226
Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINIL 254
PN TY VFE VR +K+DEA LL+QMK KGFVPDEKAV+E L KRG FR VI++L
Sbjct: 227 PNVQTYACVFEGLVREEKLDEAARLLEQMKGKGFVPDEKAVREVLASKRGPVFRNVIDVL 286
Query: 255 FGK 257
FGK
Sbjct: 287 FGK 289
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357442017|ref|XP_003591286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355480334|gb|AES61537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 296 bits (759), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 154/240 (64%), Positives = 184/240 (76%), Gaps = 7/240 (2%)
Query: 21 RITNTRVNATLQRSLSSSSDQPTK-KYVNTKSKLPPPYDPF-KKVVDEEPTDPRNLQEIF 78
+ +T++N +L S S + PT K LPPPYDPF KK EEP DP++LQ+IF
Sbjct: 41 KTIDTKINFSLSDSDSDDENTPTTTKPTEISKNLPPPYDPFSKKPAIEEPEDPKDLQQIF 100
Query: 79 HKMRT-EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
HKMRT +GL N+AVKMFDALS+ GLTHEAL+LF QIKDK MPDVVA+TA+IEAYA+AGQ
Sbjct: 101 HKMRTGDGLFNHAVKMFDALSQQGLTHEALELFGQIKDKNQMPDVVANTAIIEAYANAGQ 160
Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
KEAL+ +MRMLASGV PNAYTY V+IKGLA+ +AK L DA+KYL+EM+ KGMRPNA
Sbjct: 161 PKEALKAYMRMLASGVCPNAYTYTVIIKGLAS----DAKFLKDAKKYLLEMMEKGMRPNA 216
Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257
TY AVFE V +K+DEA LL++MK KGFVPDE AV+E L +KRG FR VINILFGK
Sbjct: 217 ETYGAVFEGLVTEEKIDEAEKLLEEMKGKGFVPDENAVREVLSNKRGPVFRTVINILFGK 276
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115467750|ref|NP_001057474.1| Os06g0308200 [Oryza sativa Japonica Group] gi|54290618|dbj|BAD62189.1| unknown protein [Oryza sativa Japonica Group] gi|54291488|dbj|BAD62309.1| unknown protein [Oryza sativa Japonica Group] gi|113595514|dbj|BAF19388.1| Os06g0308200 [Oryza sativa Japonica Group] gi|215765168|dbj|BAG86865.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 155/284 (54%), Positives = 187/284 (65%), Gaps = 42/284 (14%)
Query: 1 MAATAILRWLLHSPSPKRSLRITNTRVNATLQRSLSS-SSDQPTKKYVNTKS-------- 51
MAA A R LL P S+ NTR R LSS SS PT + NT S
Sbjct: 64 MAAAAATRPLLR---PTCSVARFNTR------RLLSSTSSPPPTNRSSNTNSPVAFDWSD 114
Query: 52 ---------------KLPPPYDPF-KKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFD 95
LP PYDPF KK EP+DP NLQE+FH+MRTEGLT+ A+KMFD
Sbjct: 115 DDDNPSPPPMEAKSPNLPLPYDPFSKKPAVMEPSDPTNLQEVFHRMRTEGLTDYAIKMFD 174
Query: 96 ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG--QGKEALRVFMRMLASGV 153
LSKDGLTHEAL+LFA IKDKG MPDVVAHTAV+EAYA+AG ++ +R + RMLASGV
Sbjct: 175 GLSKDGLTHEALELFAIIKDKGAMPDVVAHTAVLEAYANAGPAHWRDVVRTYDRMLASGV 234
Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
PNAYT AVL+KGLAA + +A KY++EM+ +GMRPNA TY AVFEA+VR +KV
Sbjct: 235 TPNAYTLAVLVKGLAA-----SDRFMEAGKYIVEMLDRGMRPNAATYLAVFEAYVRMEKV 289
Query: 214 DEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257
+E R LL+ MK+KGF P E+AV+ + KRG FRG++N+LF K
Sbjct: 290 EEGRVLLETMKSKGFTPSEEAVRSGTV-KRGHVFRGIMNMLFDK 332
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242077000|ref|XP_002448436.1| hypothetical protein SORBIDRAFT_06g027100 [Sorghum bicolor] gi|241939619|gb|EES12764.1| hypothetical protein SORBIDRAFT_06g027100 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 142/251 (56%), Positives = 177/251 (70%), Gaps = 12/251 (4%)
Query: 11 LHSPSPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPY-DPF-KKVVDEEP 68
+ S P RS TN+ V+ + +S P K +LPPPY DPF KK EP
Sbjct: 29 ITSAPPHRSPN-TNSPVSFDWSDDDADTSSHPPPSTAK-KDELPPPYYDPFSKKPAVAEP 86
Query: 69 TDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
+DP NLQEIFH+MR EGLT+ A+KMFD LSKDGLTHEAL LFA IKDKG MPDVVAHTAV
Sbjct: 87 SDPTNLQEIFHRMRKEGLTDYAIKMFDGLSKDGLTHEALALFAVIKDKGSMPDVVAHTAV 146
Query: 129 IEAYASAG--QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
+EAYA+AG ++ +R + RMLASGV PNAYT AVL++GLAA + +A KYL+
Sbjct: 147 LEAYANAGPAHWRDTVRTYDRMLASGVVPNAYTLAVLVRGLAA-----SNRCAEAGKYLV 201
Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
EM+ +GMRPN TY A FEA++R +KV+E + LL+ MK KGFVPDE+AV+ + KRGQ
Sbjct: 202 EMLDRGMRPNVATYLAAFEAYLRMEKVEEGKALLETMKGKGFVPDEEAVRGGTV-KRGQV 260
Query: 247 FRGVINILFGK 257
F G++N+LFGK
Sbjct: 261 FDGIMNLLFGK 271
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 257 | ||||||
| TAIR|locus:2831869 | 363 | AT5G03560 [Arabidopsis thalian | 0.887 | 0.628 | 0.705 | 6.8e-79 | |
| TAIR|locus:2120983 | 302 | AT4G38150 "AT4G38150" [Arabido | 0.727 | 0.619 | 0.398 | 2.3e-32 | |
| TAIR|locus:2060226 | 624 | AT2G32630 "AT2G32630" [Arabido | 0.587 | 0.241 | 0.366 | 4.8e-18 | |
| TAIR|locus:2044430 | 822 | AT2G18940 [Arabidopsis thalian | 0.603 | 0.188 | 0.325 | 2e-16 | |
| TAIR|locus:2039558 | 799 | AT2G26790 [Arabidopsis thalian | 0.521 | 0.167 | 0.347 | 6.3e-16 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.661 | 0.207 | 0.297 | 1.4e-15 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.587 | 0.234 | 0.289 | 3.2e-15 | |
| TAIR|locus:2020808 | 660 | AT1G03560 [Arabidopsis thalian | 0.540 | 0.210 | 0.310 | 6e-15 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.591 | 0.203 | 0.281 | 6.7e-15 | |
| TAIR|locus:2174008 | 974 | AT5G61990 "AT5G61990" [Arabido | 0.614 | 0.162 | 0.281 | 1.6e-14 |
| TAIR|locus:2831869 AT5G03560 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
Identities = 168/238 (70%), Positives = 187/238 (78%)
Query: 26 RVNATLQRSLSSS-SDQPTKKYVNTKSKL----PPPYDPF-KKVVDEEPTDPRNLQEIFH 79
RVN + SLS SD+ T+ V SK PPPYDPF KK EEP DP+NLQEIFH
Sbjct: 130 RVNTKVNFSLSDDDSDEETETQVTEDSKKQEPPPPPYDPFSKKPAIEEPEDPKNLQEIFH 189
Query: 80 KMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139
KMRTEG TN AVKMFDALSKDG THEAL+LF+QIKDK MPDVVAHTA++EAYA+AGQ K
Sbjct: 190 KMRTEGFTNEAVKMFDALSKDGRTHEALELFSQIKDKNRMPDVVAHTAIVEAYANAGQAK 249
Query: 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
E L+VFMRMLASGV+PNAYTY+VLIKGLAA DG K DA+KYL+EM+G GM PNA T
Sbjct: 250 ETLKVFMRMLASGVSPNAYTYSVLIKGLAA--DG--KTHKDAKKYLLEMMGNGMSPNAAT 305
Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257
YTAVFEAFVR K + AR LLQ+MK KGFVPDEKAV+EAL KRGQ FR VIN+LF K
Sbjct: 306 YTAVFEAFVREGKEESARELLQEMKGKGFVPDEKAVREALEYKRGQVFRTVINLLFDK 363
|
|
| TAIR|locus:2120983 AT4G38150 "AT4G38150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 79/198 (39%), Positives = 119/198 (60%)
Query: 47 VNTKSKLPPPYDPFKKVVDEEPTDP-RNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHE 105
VN S+ P + + +EP P + EIF KM+ GL NAV M D L KDGL E
Sbjct: 94 VNQDSRETPKPEQYP----QEPLPPPEDSDEIFKKMKEGGLIPNAVAMLDGLCKDGLVQE 149
Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
A++LF ++DKG +P+VV +TAV+EA+ A + ++A R+F +M +G+APNA++Y VL++
Sbjct: 150 AMKLFGLMRDKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNNGIAPNAFSYGVLVQ 209
Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
GL N +L DA + EM+ G PN T+ + +A R + V++A+ + +
Sbjct: 210 GLY-----NCNMLDDAVAFCSEMLESGHSPNVPTFVELVDALCRVKGVEQAQSAIDTLNQ 264
Query: 226 KGFVPDEKAVKEALIDKR 243
KGF + KAVKE +DKR
Sbjct: 265 KGFAVNVKAVKE-FMDKR 281
|
|
| TAIR|locus:2060226 AT2G32630 "AT2G32630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 228 (85.3 bits), Expect = 4.8e-18, P = 4.8e-18
Identities = 59/161 (36%), Positives = 85/161 (52%)
Query: 80 KMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139
K+ T TN + D K+G EA +LF ++ KG P+ + + +I AY G+ K
Sbjct: 466 KLSTVSYTN----LIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIK 521
Query: 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
EA ++ M A+G+ P++YTY LI G AD + +A + EM KG+ N+ T
Sbjct: 522 EARKLRANMEANGMDPDSYTYTSLIHG-ECIADN----VDEAMRLFSEMGLKGLDQNSVT 576
Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
YT + +A K DEA GL +MK KG+ D K V ALI
Sbjct: 577 YTVMISGLSKAGKSDEAFGLYDEMKRKGYTIDNK-VYTALI 616
|
|
| TAIR|locus:2044430 AT2G18940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 201 (75.8 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 53/163 (32%), Positives = 84/163 (51%)
Query: 72 RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
R + + +MR++GL + + A +++GL EA + FA++K G+ P V + A+
Sbjct: 263 RKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNAL 322
Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
++ + AG EAL V M + ++ TY L+ A G +K +A + M
Sbjct: 323 LQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRA--GFSK---EAAGVIEMM 377
Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
KG+ PNA TYT V +A+ +A K DEA L MK G VP+
Sbjct: 378 TKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPN 420
|
|
| TAIR|locus:2039558 AT2G26790 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 210 (79.0 bits), Expect = 6.3e-16, P = 6.3e-16
Identities = 49/141 (34%), Positives = 80/141 (56%)
Query: 94 FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
FDALSK G EA +L ++KD+G +PDV+ +T +I+ Y G+ +AL + M+ +G+
Sbjct: 395 FDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGM 454
Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
+P+ TY VL+ GLA +G+ + + + M +G +PNA T + + E A+KV
Sbjct: 455 SPDLITYNVLVSGLAR--NGHEE---EVLEIYERMKAEGPKPNAVTNSVIIEGLCFARKV 509
Query: 214 DEARGLLQQMKAKGFVPDEKA 234
EA ++ K P+ KA
Sbjct: 510 KEAEDFFSSLEQK--CPENKA 528
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 207 (77.9 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 53/178 (29%), Positives = 92/178 (51%)
Query: 57 YDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALS--KDGLTH-EALQLFAQI 113
Y+ V + T + + KM+++G+ +A ++ K G H EA Q+F ++
Sbjct: 246 YNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEM 305
Query: 114 KDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG 173
K G D V + A+++ Y + + KEA++V M+ +G +P+ TY LI A A DG
Sbjct: 306 KAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLIS--AYARDG 363
Query: 174 NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
+L +A + +M KG +P+ TYT + F RA KV+ A + ++M+ G P+
Sbjct: 364 ---MLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPN 418
|
|
| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 202 (76.2 bits), Expect = 3.2e-15, P = 3.2e-15
Identities = 46/159 (28%), Positives = 84/159 (52%)
Query: 76 EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
E+ KM + +AVK + D L KDG A LF +++ KG D++ + +I +
Sbjct: 249 ELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGF 308
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
+AG+ + ++ M+ ++PN T++VLI +G L +A + L EM+ +G
Sbjct: 309 CNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVK--EGK---LREADQLLKEMMQRG 363
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
+ PN TY ++ + F + +++EA ++ M +KG PD
Sbjct: 364 IAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPD 402
|
|
| TAIR|locus:2020808 AT1G03560 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 185 (70.2 bits), Expect = 6.0e-15, Sum P(2) = 6.0e-15
Identities = 45/145 (31%), Positives = 76/145 (52%)
Query: 97 LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
L K+G +E +F + KG P+V +T +I+ YA +G ++A+R+ RM+ G P+
Sbjct: 337 LCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPD 396
Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
TY+V++ GL N ++ +A Y G+ N+ Y+++ + +A +VDEA
Sbjct: 397 VVTYSVVVNGLCK----NGRV-EEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEA 451
Query: 217 RGLLQQMKAKGFVPDEKAVKEALID 241
L ++M KG D ALID
Sbjct: 452 ERLFEEMSEKGCTRDSYCYN-ALID 475
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 200 (75.5 bits), Expect = 6.7e-15, P = 6.7e-15
Identities = 45/160 (28%), Positives = 82/160 (51%)
Query: 76 EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
E +MR GL N + D S+ G +EA ++ ++ D G P VV + A+I +
Sbjct: 366 EFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGH 425
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
G+ ++A+ V M G++P+ +Y+ ++ G + D + +A + EMV KG
Sbjct: 426 CVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYD-----VDEALRVKREMVEKG 480
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
++P+ TY+++ + F ++ EA L ++M G PDE
Sbjct: 481 IKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDE 520
|
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| TAIR|locus:2174008 AT5G61990 "AT5G61990" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 198 (74.8 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 47/167 (28%), Positives = 86/167 (51%)
Query: 78 FHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
+ M +G+ +A + + L K+ +A ++F +++ KG PDV ++ +I ++
Sbjct: 580 YRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSK 639
Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
G ++A +F M+ G+ PN Y +L+ G + + + A++ L EM KG+
Sbjct: 640 LGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGE-----IEKAKELLDEMSVKGLH 694
Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
PNA TY + + + ++ + EA L +MK KG VPD V L+D
Sbjct: 695 PNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDS-FVYTTLVD 740
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00022480001 | SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (422 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00035617001 | SubName- Full=Chromosome undetermined scaffold_79, whole genome shotgun sequence; (403 aa) | • | 0.500 | |||||||
 | nad2 | SubName- Full=Chromosome undetermined scaffold_79, whole genome shotgun sequence; (266 aa) | • | 0.487 | |||||||
 | nad4 | SubName- Full=Chromosome undetermined scaffold_79, whole genome shotgun sequence; (511 aa) | • | 0.475 | |||||||
 | GSVIVG00003225001 | SubName- Full=Chromosome chr2 scaffold_140, whole genome shotgun sequence; (307 aa) | • | 0.444 | |||||||
 | GSVIVG00009423001 | SubName- Full=Chromosome chr2 scaffold_233, whole genome shotgun sequence; (141 aa) | • | 0.424 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 257 | |||
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-16 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.004 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 7e-16
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
PDVV + +I+ Y G+ +EAL++F M G+ PN YTY++LI GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 2e-08
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 14/133 (10%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ D SK G +A +F ++ K ++++ A+I Y + G+G +A+ +F RM+A G
Sbjct: 366 LVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421
Query: 153 VAPNAYTY-AVLIKGLAAAADGNAKILGDAQKYLMEMVGK--GMRPNAGTYTAVFEAFVR 209
VAPN T+ AVL A G L + + + + + ++P A Y + E R
Sbjct: 422 VAPNHVTFLAVLS---ACRYSG----LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474
Query: 210 AQKVDEARGLLQQ 222
+DEA ++++
Sbjct: 475 EGLLDEAYAMIRR 487
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 2e-08
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 5/120 (4%)
Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
AL++ +++ G D +T +I A +G+ VF M+ +GV N +T+ LI
Sbjct: 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515
Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
G A A AK G Y + M K ++P+ + A+ A ++ VD A +L +MKA
Sbjct: 516 GCARAGQ-VAKAFG---AYGI-MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA 570
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 5e-08
Identities = 47/168 (27%), Positives = 74/168 (44%), Gaps = 21/168 (12%)
Query: 79 HKMRT----EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
H +RT +G NA + D + G + A F H DVV+ ++ Y +
Sbjct: 514 HVLRTGIGFDGFLPNA--LLDLYVRCGRMNYAWNQFNS-----HEKDVVSWNILLTGYVA 566
Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK-GM 193
G+G A+ +F RM+ SGV P+ T+ L+ A + ++ +Y M K +
Sbjct: 567 HGKGSMAVELFNRMVESGVNPDEVTFISLL-----CACSRSGMVTQGLEYFHSMEEKYSI 621
Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
PN Y V + RA K+ EA + +M PD AV AL++
Sbjct: 622 TPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT---PD-PAVWGALLN 665
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 7e-08
Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 8/158 (5%)
Query: 77 IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
I+ M+ +G+ + V + D G +A ++ + +G V++++++ A +
Sbjct: 636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695
Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
+A K+AL ++ + + + P T LI L +GN L A + L EM G+
Sbjct: 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALC---EGNQ--LPKALEVLSEMKRLGL 750
Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
PN TY+ + A R D LL Q K G P+
Sbjct: 751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 8e-07
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
TY + + +A +V+EA L ++MK +G PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 1e-06
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
P+ TY + + + + KV+EA L +MK +G P+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNV 38
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 1e-06
Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 11/139 (7%)
Query: 96 ALSKDGLTHEALQLFAQIKDKGH--MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
A + G A + A++K + H PD + A+++A A+AGQ A V+ + +
Sbjct: 551 ACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610
Query: 154 --APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
P YT AV + + G+ A +M KG++P+ ++A+ + A
Sbjct: 611 KGTPEVYTIAV----NSCSQKGD---WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663
Query: 212 KVDEARGLLQQMKAKGFVP 230
+D+A +LQ + +G
Sbjct: 664 DLDKAFEILQDARKQGIKL 682
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 2e-06
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
P+ TY LI G G + +A K EM +G++PN TY+ + + +
Sbjct: 1 PDVVTYNTLIDGYCKK--GKVE---EALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 4e-06
Identities = 33/128 (25%), Positives = 49/128 (38%), Gaps = 8/128 (6%)
Query: 76 EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
EI R +G+ V + A S +AL+L+ IK P V A+I A
Sbjct: 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL 729
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
Q +AL V M G+ PN TY++L+ D + L + G
Sbjct: 730 CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV-----GLDLLSQAKEDG 784
Query: 193 MRPNAGTY 200
++PN
Sbjct: 785 IKPNLVMC 792
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 6e-06
Identities = 51/188 (27%), Positives = 77/188 (40%), Gaps = 17/188 (9%)
Query: 76 EIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
E+FH+M G+ N V F AL ++ G +A + ++ K PD V A+I A
Sbjct: 493 EVFHEMVNAGVEAN-VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551
Query: 132 YASAGQGKEALRVFMRMLASG--VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
+G A V M A + P+ T L+K A A G D K + +M+
Sbjct: 552 CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA--GQV----DRAKEVYQMI 605
Query: 190 GK-GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
+ ++ YT + + D A + MK KG PDE AL+D G
Sbjct: 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF-SALVDVAGHA-- 662
Query: 249 GVINILFG 256
G ++ F
Sbjct: 663 GDLDKAFE 670
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 9e-06
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 16/153 (10%)
Query: 76 EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
++++MR G++ + M S+ L A Q A + G D+VA+TA+++ Y
Sbjct: 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY 370
Query: 133 ASAGQGKEALRVFMRMLASGVAP--NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
+ G+ ++A VF RM P N ++ LI G G A + M+
Sbjct: 371 SKWGRMEDARNVFDRM------PRKNLISWNALIAGYGNHGRGT-----KAVEMFERMIA 419
Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
+G+ PN T+ AV A + ++ + Q M
Sbjct: 420 EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 1e-05
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
+ D K G EAL+LF ++K +G P+V ++ +I+
Sbjct: 9 LIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 2e-05
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 5/136 (3%)
Query: 96 ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
+ S+ G AL ++ +K KG PD V +A+++ AG +A + G+
Sbjct: 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682
Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
+Y+ L+ A NAK A + ++ +RP T A+ A ++ +
Sbjct: 683 GTVSYSSLM-----GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPK 737
Query: 216 ARGLLQQMKAKGFVPD 231
A +L +MK G P+
Sbjct: 738 ALEVLSEMKRLGLCPN 753
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 7e-05
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
V + +I+ AG+ +EAL +F M G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 2e-04
Identities = 31/140 (22%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 90 AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149
+ + D SK G +A +F + +K VA +++ YA G +EAL ++ M
Sbjct: 262 SCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMR 317
Query: 150 ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
SGV+ + +T++++I+ + A +L A++ ++ G + TA+ + + +
Sbjct: 318 DSGVSIDQFTFSIMIRIFSRLA-----LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372
Query: 210 AQKVDEARGLLQQMKAKGFV 229
++++AR + +M K +
Sbjct: 373 WGRMEDARNVFDRMPRKNLI 392
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 2e-04
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
KG++P+ TY + + RA +VDEA LL +M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 3e-04
Identities = 30/132 (22%), Positives = 61/132 (46%), Gaps = 11/132 (8%)
Query: 99 KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
K G+ +A +LF ++ ++ ++ + +I AG +EA +F M G
Sbjct: 170 KCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR 225
Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK-GMRPNAGTYTAVFEAFVRAQKVDEAR 217
T+ V+++ A+A G+A+ A + L V K G+ + A+ + + + +++AR
Sbjct: 226 TFVVMLR--ASAGLGSAR----AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR 279
Query: 218 GLLQQMKAKGFV 229
+ M K V
Sbjct: 280 CVFDGMPEKTTV 291
|
Length = 697 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 3e-04
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
V + ++I Y AG+ +EAL +F M GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 7e-04
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
TY A+ A +A D A +L++MKA G P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.001
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
TY ++ + +A K++EA L ++MK KG
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 0.004
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 117 GHMP--DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172
G MP D+ + ++ YA AG EAL ++ RML +GV P+ YT+ +++ D
Sbjct: 145 GKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202
|
Length = 857 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 257 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.64 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.6 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.54 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.48 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.43 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.35 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.28 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.28 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.14 | |
| PF12854 | 34 | PPR_1: PPR repeat | 99.13 | |
| PF12854 | 34 | PPR_1: PPR repeat | 99.1 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.05 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.03 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.01 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.96 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 98.91 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 98.81 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.81 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.8 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 98.74 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.74 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.72 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.72 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.71 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.71 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.69 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.69 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.67 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 98.65 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.57 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 98.55 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.53 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 98.51 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 98.51 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.5 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 98.5 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.5 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 98.45 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.45 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.44 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.43 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.43 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.42 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 98.42 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.41 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.28 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 98.27 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.22 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 98.22 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 98.22 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.21 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.21 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 98.11 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.08 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.08 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 98.07 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.05 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.04 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 98.02 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.0 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.94 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 97.94 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 97.94 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.92 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.9 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 97.86 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.82 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.77 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.76 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 97.74 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.74 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.72 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 97.72 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 97.7 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.69 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.68 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.67 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 97.65 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.64 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.63 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.62 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.6 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.6 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 97.58 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.54 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 97.5 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.48 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 97.48 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 97.47 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 97.47 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 97.47 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.47 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.46 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 97.46 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 97.41 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.39 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.38 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.38 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.38 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.35 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 97.3 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.25 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 97.16 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.14 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 97.1 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.1 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.09 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.08 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 97.05 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.04 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.03 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.01 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.01 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 96.96 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.94 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.92 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.89 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.82 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 96.79 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 96.78 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.75 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.73 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 96.73 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 96.69 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.67 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 96.66 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.63 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.61 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 96.57 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.55 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 96.54 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 96.52 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 96.51 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.48 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 96.48 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 96.46 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 96.44 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 96.42 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.37 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.32 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.31 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.3 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 96.29 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.25 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 96.23 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 96.21 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.2 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 96.14 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 96.04 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 96.04 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 96.02 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.0 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 95.9 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 95.71 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 95.6 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.52 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 95.49 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 95.47 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.46 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 95.34 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.06 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 95.0 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 94.94 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 94.89 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 94.83 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 94.8 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.71 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.62 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 94.62 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.59 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 94.52 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 94.42 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 94.3 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 94.29 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 94.18 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 94.15 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 94.11 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.06 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 93.94 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 93.9 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 93.81 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.75 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.74 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 93.7 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 93.66 | |
| PLN02789 | 320 | farnesyltranstransferase | 93.64 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 93.58 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.55 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 93.37 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 93.31 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 93.31 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.94 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 92.92 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 92.83 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 92.74 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 92.74 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 92.74 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.69 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 92.52 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 92.46 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.26 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 92.24 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.16 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 92.07 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.91 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 91.78 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 91.77 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 91.71 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 91.6 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 91.56 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 91.54 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 91.21 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 91.16 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.04 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 91.02 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 90.87 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.63 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 90.37 | |
| PLN02789 | 320 | farnesyltranstransferase | 90.33 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 89.62 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 89.48 | |
| PRK10564 | 303 | maltose regulon periplasmic protein; Provisional | 89.01 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 88.98 | |
| PF11848 | 48 | DUF3368: Domain of unknown function (DUF3368); Int | 88.19 | |
| COG0735 | 145 | Fur Fe2+/Zn2+ uptake regulation proteins [Inorgani | 87.94 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 87.62 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 87.56 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 86.62 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.52 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 86.5 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 86.47 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 86.27 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 86.07 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 85.81 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.72 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 85.02 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 84.8 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 84.66 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 84.49 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 84.13 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 84.13 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 84.05 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 84.0 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 83.78 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.74 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 83.46 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 83.43 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.33 | |
| PF11848 | 48 | DUF3368: Domain of unknown function (DUF3368); Int | 82.96 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 82.5 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.19 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 81.68 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 81.45 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 81.26 | |
| PF11663 | 140 | Toxin_YhaV: Toxin with endonuclease activity YhaV; | 80.62 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 80.31 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 80.28 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 80.22 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 80.21 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 80.11 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 80.08 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=283.91 Aligned_cols=232 Identities=17% Similarity=0.223 Sum_probs=173.2
Q ss_pred CcccccchhhhhhhhcccCCCCccchhhccc----CCCCCCcccccc--ccccCCCCHHHHHHHHHHHHhCCCCCcHH--
Q 043311 20 LRITNTRVNATLQRSLSSSSDQPTKKYVNTK----SKLPPPYDPFKK--VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-- 91 (257)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~~~--~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-- 91 (257)
+.|+..+|+.++..+++.+..+.+.+++.+. .++.|+..+|+. .+|++.|++++|.++|+.|.+.|+.|+..
T Consensus 538 v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ty 617 (1060)
T PLN03218 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHH
Confidence 4455666666666666666666666553322 456666666665 66777777777777777777777766644
Q ss_pred -HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043311 92 -KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA 170 (257)
Q Consensus 92 -~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~ 170 (257)
++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|+++|++|.+.|+.||..+|+++|.+|++
T Consensus 618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k- 696 (1060)
T PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN- 696 (1060)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-
Confidence 477777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhh
Q 043311 171 ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250 (257)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 250 (257)
.|.+++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|.+.|+.+.
T Consensus 697 ----~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 697 ----AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772 (1060)
T ss_pred ----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 4448888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhhhc
Q 043311 251 INILFG 256 (257)
Q Consensus 251 ~~~l~~ 256 (257)
|.++|+
T Consensus 773 A~~l~~ 778 (1060)
T PLN03218 773 GLDLLS 778 (1060)
T ss_pred HHHHHH
Confidence 888775
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=283.66 Aligned_cols=230 Identities=20% Similarity=0.241 Sum_probs=163.0
Q ss_pred ccccchhhhhhhhcccCCCCccchh--hcccCCCCCCcccccc--ccccCCCCHHHHHHHHHHHHhCCCCCcHH---HHH
Q 043311 22 ITNTRVNATLQRSLSSSSDQPTKKY--VNTKSKLPPPYDPFKK--VVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMF 94 (257)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~--~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~ll 94 (257)
|+..+++.++..++..+....+.++ .+...++.|+..+|+. .+|++.|+++.|.++|++|.+.|+.|+.. ++|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4556677777777777777777666 4445667777777766 77777788888888888887777777765 377
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhccC
Q 043311 95 DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA--SGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|+++|++|.. .|+.||..||+++|.+|++.|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 77777777777777777777777777777777777777777777777777777765 4677777777777777777444
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHH
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~ 252 (257)
+++|.++|++|.+.|+.|+..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|.+.|+.+.|.
T Consensus 595 -----ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 595 -----VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred -----HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hhhc
Q 043311 253 ILFG 256 (257)
Q Consensus 253 ~l~~ 256 (257)
++|+
T Consensus 670 ~l~~ 673 (1060)
T PLN03218 670 EILQ 673 (1060)
T ss_pred HHHH
Confidence 6553
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=259.07 Aligned_cols=224 Identities=18% Similarity=0.180 Sum_probs=147.8
Q ss_pred ccccchhhhhhhhcccCCCCccchhhcccCCCCCCcccccc--ccccCCCCHHHHHHHHHHHHhCCCCCcHH---HHHHH
Q 043311 22 ITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK--VVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDA 96 (257)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~ll~~ 96 (257)
++...+++++...++.+..+.+.+++.... .++..+|+. ..|++.|++++|.++|++|.+.|+.|+.. +++.+
T Consensus 257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a 334 (697)
T PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMP--EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334 (697)
T ss_pred ccceeHHHHHHHHHHCCCHHHHHHHHHhCC--CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 344455566666666666666666654433 234444444 66677777777777777777777777655 36667
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcch
Q 043311 97 LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176 (257)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~ 176 (257)
|++.|++++|.+++.+|.+.|+.||..+||+||++|++.|++++|.++|++|. +||..|||+||.+|++ .|
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~-----~G 405 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGN-----HG 405 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHH-----cC
Confidence 77777777777777777777766666666666666666666666666666664 3566666666666666 33
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA-KGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 177 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
+.++|.++|++|.+.|+.||..||+++|.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.++.+.|..+.|.++|
T Consensus 406 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~ 485 (697)
T PLN03081 406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHH
Confidence 3677777777777777777777777777777777777777777777764 367777777777777777777777766665
Q ss_pred c
Q 043311 256 G 256 (257)
Q Consensus 256 ~ 256 (257)
+
T Consensus 486 ~ 486 (697)
T PLN03081 486 R 486 (697)
T ss_pred H
Confidence 4
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=255.56 Aligned_cols=194 Identities=16% Similarity=0.181 Sum_probs=154.5
Q ss_pred CCCCcccccc--ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043311 53 LPPPYDPFKK--VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130 (257)
Q Consensus 53 ~~p~~~~~~~--~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 130 (257)
+.|+...++. ..|++.|++++|.++|++|...+ ...++++|.+|++.|++++|.++|++|.+.|+.||..||+++|.
T Consensus 255 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~-~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~ 333 (697)
T PLN03081 255 VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT-TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333 (697)
T ss_pred CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCC-hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3344444443 56667777777777777775532 22344577777777777777777777777777777777777777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 043311 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210 (257)
Q Consensus 131 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 210 (257)
+|++.|++++|.+++..|.+.|+.||..+|+++|.+|++ +|++++|.++|++|. .||..+||+||.+|++.
T Consensus 334 a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k-----~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK-----WGRMEDARNVFDRMP----RKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH-----CCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHc
Confidence 777777777777777777777777777777777777777 555999999999885 47999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 211 QKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 211 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
|+.++|.++|++|.+.|+.||..||+++|.+|.+.|..+.+.++|+
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~ 450 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQ 450 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=253.54 Aligned_cols=233 Identities=19% Similarity=0.169 Sum_probs=141.4
Q ss_pred cccccchhhhhhhhcccCCCCccchhhcccCCCCCCcccccc--ccccCCCCHHHHHHHHHHHHhCCCCCcHH---HHHH
Q 043311 21 RITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK--VVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFD 95 (257)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~ll~ 95 (257)
.++..++++++...++.+..+.+.+++.+.. .|+..+|+. ..|++.|++++|.++|++|.+.|+.|+.. +++.
T Consensus 320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~ 397 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRME--TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397 (857)
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHH
Confidence 3444445555555555555555555544332 233344444 55555566666666666665555555543 2455
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------------------------------hHHHHHH
Q 043311 96 ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ-------------------------------GKEALRV 144 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~-------------------------------~~~a~~~ 144 (257)
+|++.|+++.|.++++.|.+.|+.|+..+||+||++|++.|+ .++|+.+
T Consensus 398 a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~l 477 (857)
T PLN03077 398 ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIF 477 (857)
T ss_pred HHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHH
Confidence 555555555555555555555544444444444444444444 4444444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhccC----------------------------------------------------
Q 043311 145 FMRMLASGVAPNAYTYAVLIKGLAAAAD---------------------------------------------------- 172 (257)
Q Consensus 145 ~~~m~~~g~~~~~~t~~~ll~~~~~~~~---------------------------------------------------- 172 (257)
|++|.. +++||..||+.+|.+|++.|+
T Consensus 478 f~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s 556 (857)
T PLN03077 478 FRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVS 556 (857)
T ss_pred HHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhh
Confidence 555543 356666665555555444332
Q ss_pred --------CcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHhh
Q 043311 173 --------GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK-AKGFVPDEKAVKEALIDKR 243 (257)
Q Consensus 173 --------~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~t~~~ll~~~~ 243 (257)
...|+.++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|. +.|+.||..+|+.++.++.
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~ 636 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG 636 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 0135577888888888888888888888888888888888888888888887 5588888888888888888
Q ss_pred cCCchhhHHhhhc
Q 043311 244 GQGFRGVINILFG 256 (257)
Q Consensus 244 ~~g~~~~~~~l~~ 256 (257)
+.|+.++|+++++
T Consensus 637 r~G~~~eA~~~~~ 649 (857)
T PLN03077 637 RAGKLTEAYNFIN 649 (857)
T ss_pred hCCCHHHHHHHHH
Confidence 8888888887775
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=252.08 Aligned_cols=186 Identities=18% Similarity=0.167 Sum_probs=112.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH---HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 139 (257)
..|++.|++++|.++|++|.+.|+.|+.. +++.+|++.|+++.+.+++..|.+.|+.||..+||+||.+|++.|+++
T Consensus 261 ~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 340 (857)
T PLN03077 261 SGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHH
Confidence 44444444444444444444444444433 244444444444444444444444444445555555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 219 (257)
+|.++|++|. .||..+||++|.+|++ .|.+++|.++|++|.+.|+.||..||+++|.+|++.|+++.|.++
T Consensus 341 ~A~~vf~~m~----~~d~~s~n~li~~~~~-----~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l 411 (857)
T PLN03077 341 EAEKVFSRME----TKDAVSWTAMISGYEK-----NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411 (857)
T ss_pred HHHHHHhhCC----CCCeeeHHHHHHHHHh-----CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHH
Confidence 5555554443 3444455555555555 344777777777777777777777777777777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 220 LQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 220 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
++.|.+.|+.|+..++++||.+|.+.|+.+.|.++|++
T Consensus 412 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~ 449 (857)
T PLN03077 412 HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN 449 (857)
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777777777777777777777777777777753
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.1e-16 Score=91.42 Aligned_cols=50 Identities=44% Similarity=0.818 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 120 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
||+.+||++|.+|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888999999999999999999999999988999999999999988874
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.9e-15 Score=87.52 Aligned_cols=50 Identities=26% Similarity=0.440 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 043311 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244 (257)
Q Consensus 195 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 244 (257)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777753
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-12 Score=111.40 Aligned_cols=218 Identities=12% Similarity=0.076 Sum_probs=131.2
Q ss_pred hhhhhhcccCCCCccchhhcccCCCCCCc-ccccc--ccccCCCCHHHHHHHHHHHHhCCCCCcHH-------HHHHHHH
Q 043311 29 ATLQRSLSSSSDQPTKKYVNTKSKLPPPY-DPFKK--VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-------KMFDALS 98 (257)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~--~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~ll~~~~ 98 (257)
.+.......+..+.+...+.+.....|.. ..+.. ..+...|++++|.+.++.+.+.+..+... .+...+.
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 33444444555555555544433333321 11111 56667777777777777776654332211 2344556
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhH
Q 043311 99 KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178 (257)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 178 (257)
+.|++++|..+|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......+++.+..+|...|+ +
T Consensus 192 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~-----~ 265 (389)
T PRK11788 192 ARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD-----E 265 (389)
T ss_pred hCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC-----H
Confidence 6777777777777776542 223456666777777777777777777777754322224566777777777433 7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc---CCchhhHHhhh
Q 043311 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG---QGFRGVINILF 255 (257)
Q Consensus 179 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~---~g~~~~~~~l~ 255 (257)
++|...++.+.+. .|+...+..+...+.+.|++++|..+++++.+. .|+..++..++..+.. .|....+..+|
T Consensus 266 ~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~ 341 (389)
T PRK11788 266 AEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLL 341 (389)
T ss_pred HHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHH
Confidence 7777777777654 456666677777777777777777777777654 5777777777665543 34555555444
Q ss_pred c
Q 043311 256 G 256 (257)
Q Consensus 256 ~ 256 (257)
+
T Consensus 342 ~ 342 (389)
T PRK11788 342 R 342 (389)
T ss_pred H
Confidence 3
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.3e-12 Score=105.63 Aligned_cols=186 Identities=11% Similarity=0.026 Sum_probs=133.8
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCc--HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNN--AVKMFDALSKDGLTHEALQLFAQIKDKGHMPD----VVAHTAVIEAYASAG 136 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~ 136 (257)
..+.+.|+++.|..+|..+.+...... ...+...+.+.|++++|.+.|+.+.+.+..++ ...|..+...+.+.|
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 566777888888888888876422111 12467778888888888888888877543322 123556666777888
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 043311 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216 (257)
Q Consensus 137 ~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 216 (257)
++++|...|+++.+.. +.+...+..+...+.+. |++++|.++|+++...+-.....+++.+..+|.+.|++++|
T Consensus 195 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 195 DLDAARALLKKALAAD-PQCVRASILLGDLALAQ-----GDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred CHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888887653 33456777777788884 44888888888887643222245678888888888999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 217 RGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 217 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
...++++.+. .|+...+..+...+...|+.+.|..+|+
T Consensus 269 ~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 269 LEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred HHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9988888775 4666677788888888888888888775
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-11 Score=100.54 Aligned_cols=180 Identities=15% Similarity=0.182 Sum_probs=141.7
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH---HHHH--HHHhcCChHHH-HHHHHHHHhCC-------------------
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFD--ALSKDGLTHEA-LQLFAQIKDKG------------------- 117 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~ll~--~~~~~~~~~~a-~~~~~~m~~~g------------------- 117 (257)
.-....|.+..+.-+|+.|++.|...+.. .|++ +|....++--+ ++-|-.|.+.|
T Consensus 123 ~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~ 202 (625)
T KOG4422|consen 123 LKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFET 202 (625)
T ss_pred HHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhh
Confidence 44567889999999999999988766643 2322 33333333222 22333343322
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCH
Q 043311 118 HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197 (257)
Q Consensus 118 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 197 (257)
.+-+..+|.+||.++++--..+.|.+++++-.....+.+..+||.+|.+-. +....+++.+|....+.||.
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S---------~~~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS---------YSVGKKLVAEMISQKMTPNL 273 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH---------hhccHHHHHHHHHhhcCCch
Confidence 123568999999999999999999999999998888999999999998654 34448899999999999999
Q ss_pred HHHHHHHHHHHHcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhH
Q 043311 198 GTYTAVFEAFVRAQKVDE----ARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251 (257)
Q Consensus 198 ~~~~~li~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~ 251 (257)
.|||+++++.++.|+++. |.+++.+|.+-|+.|...+|..+|.-+.+.++..++
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 999999999999998765 566889999999999999999999999988887654
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-10 Score=107.75 Aligned_cols=185 Identities=16% Similarity=0.097 Sum_probs=129.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEA 141 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 141 (257)
..+...|++++|.+.|+.+...+..+.. ..+..++.+.|++++|.+.++.+.+. .+.+...++.+...|.+.|++++|
T Consensus 711 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A 789 (899)
T TIGR02917 711 DLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKA 789 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHH
Confidence 4555666666666666666654333221 23566666677777777777666654 234566677777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043311 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221 (257)
Q Consensus 142 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 221 (257)
..+|+++.+.+ +.+..+++.+...+.. .|. ++|..+++...+.. +-+..++..+...+...|++++|..+|+
T Consensus 790 ~~~~~~~~~~~-p~~~~~~~~l~~~~~~-----~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 861 (899)
T TIGR02917 790 IKHYRTVVKKA-PDNAVVLNNLAWLYLE-----LKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLR 861 (899)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHh-----cCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777777653 4466777777777776 444 45777777665531 2244566777788889999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 222 QMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 222 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
++.+.+.. +..++..+..++...|..+.|..+|+|
T Consensus 862 ~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 896 (899)
T TIGR02917 862 KAVNIAPE-AAAIRYHLALALLATGRKAEARKELDK 896 (899)
T ss_pred HHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99987644 889999999999999999999998864
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.8e-10 Score=103.67 Aligned_cols=154 Identities=16% Similarity=0.070 Sum_probs=62.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+...|+++.|.++++.+.+.... +.. ..+..+|.+.|++++|.+.|+.+.+.. +.+...|..+..+|.+.|++++
T Consensus 575 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 653 (899)
T TIGR02917 575 QYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAK 653 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence 3344445555555555544432211 111 124444444455555555554444321 1233344444444444444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 220 (257)
|..+|+++.+.. +.+..++..+...+... |+++.|..+++.+.+.+ +.+...+..+...+.+.|++++|.+.|
T Consensus 654 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 654 AITSLKRALELK-PDNTEAQIGLAQLLLAA-----KRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 444444444321 22334444444444442 22444444444443321 122333333334444444444444444
Q ss_pred HHHH
Q 043311 221 QQMK 224 (257)
Q Consensus 221 ~~m~ 224 (257)
+++.
T Consensus 727 ~~~~ 730 (899)
T TIGR02917 727 RKAL 730 (899)
T ss_pred HHHH
Confidence 4433
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-10 Score=93.66 Aligned_cols=159 Identities=19% Similarity=0.219 Sum_probs=128.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~ 171 (257)
.+|.++||....+.|.+++++-.+...+.+..+||.+|.+-+-..+ .+++.+|.+..+.||..|||++++..++.|
T Consensus 212 ~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg 287 (625)
T KOG4422|consen 212 IMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFG 287 (625)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhc
Confidence 4899999999999999999999999999999999999988655443 778999999999999999999999999966
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH----CCCCC----CHHHHHHHHHHh
Q 043311 172 DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE-ARGLLQQMKA----KGFVP----DEKAVKEALIDK 242 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~----~g~~p----~~~t~~~ll~~~ 242 (257)
+.+. ....+.+++.+|++-|++|...+|..+|.-+++.++..+ +..++.++.+ +.++| |..-|..-+..|
T Consensus 288 ~F~~-ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic 366 (625)
T KOG4422|consen 288 KFED-ARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSIC 366 (625)
T ss_pred chHH-HHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHH
Confidence 5111 134566788999999999999999999999999887643 4445555544 33443 455677778889
Q ss_pred hcCCchhhHHhhh
Q 043311 243 RGQGFRGVINILF 255 (257)
Q Consensus 243 ~~~g~~~~~~~l~ 255 (257)
.+..+.+.|+++.
T Consensus 367 ~~l~d~~LA~~v~ 379 (625)
T KOG4422|consen 367 SSLRDLELAYQVH 379 (625)
T ss_pred HHhhhHHHHHHHH
Confidence 9999999888764
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-10 Score=101.13 Aligned_cols=164 Identities=21% Similarity=0.247 Sum_probs=112.0
Q ss_pred HHHHHHHhCCCCCcHH---HHHHHHHhcCChHHHHHHHHHHHhCC------------------------CCCCHHHHHHH
Q 043311 76 EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKG------------------------HMPDVVAHTAV 128 (257)
Q Consensus 76 ~~~~~m~~~~~~p~~~---~ll~~~~~~~~~~~a~~~~~~m~~~g------------------------~~p~~~~~~~l 128 (257)
.+|..+...|+.|+.. .+|.-||..|+++.|- +|..|+-.. -.|...||+.|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 5667777777777765 3777777777777777 776665321 24778889999
Q ss_pred HHHHHhcCChHHHHHHHHH-HHH---------------------------------------------------------
Q 043311 129 IEAYASAGQGKEALRVFMR-MLA--------------------------------------------------------- 150 (257)
Q Consensus 129 i~~~~~~~~~~~a~~~~~~-m~~--------------------------------------------------------- 150 (257)
+.+|...||+.. ++.-++ |..
T Consensus 90 l~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 90 LKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 999999988543 222221 211
Q ss_pred ----------------------------CCC-CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHH
Q 043311 151 ----------------------------SGV-APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201 (257)
Q Consensus 151 ----------------------------~g~-~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 201 (257)
.+. .|++.+|.++++.... +|.++.|..++.+|++.|++.+.+-|-
T Consensus 169 a~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~ala-----ag~~d~Ak~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 169 AWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALA-----AGDVDGAKNLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred cccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHh-----cCchhhHHHHHHHHHHcCCCcccccch
Confidence 111 2445555555554444 345788888888888888888877777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchh
Q 043311 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249 (257)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 249 (257)
.||-+ .++...++.+++-|.+.||.|++.|+.--+..+.++|...
T Consensus 244 pLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~ 288 (1088)
T KOG4318|consen 244 PLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTK 288 (1088)
T ss_pred hhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhh
Confidence 77766 7777788888888888888888888888888887766533
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.3e-11 Score=62.70 Aligned_cols=34 Identities=35% Similarity=0.695 Sum_probs=29.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043311 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 191 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 224 (257)
.|+.||..|||+||.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4788899999999999999999999999988873
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-10 Score=62.14 Aligned_cols=34 Identities=38% Similarity=0.652 Sum_probs=28.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043311 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149 (257)
Q Consensus 116 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 149 (257)
+|+.||..|||+||.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3778888888888888888888888888888873
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-07 Score=72.93 Aligned_cols=186 Identities=12% Similarity=0.036 Sum_probs=145.7
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+...|++++|.+.+++..+..-. +.. ..+...+...|++++|.+.|+...+.. +.+...+..+-..+...|++++
T Consensus 39 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~ 117 (234)
T TIGR02521 39 LGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQ 117 (234)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHH
Confidence 6777899999999999998875311 111 136778889999999999999988763 2356678888889999999999
Q ss_pred HHHHHHHHHHCCC-CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043311 141 ALRVFMRMLASGV-APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219 (257)
Q Consensus 141 a~~~~~~m~~~g~-~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 219 (257)
|...|++..+... ......+..+-..+... |+++.|...+++..... +.+...+..+...+...|++++|...
T Consensus 118 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 191 (234)
T TIGR02521 118 AMQQFEQAIEDPLYPQPARSLENAGLCALKA-----GDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAY 191 (234)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999986532 22345666677777774 44999999999987642 22456788888999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 220 LQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 220 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+++.... ...+...+..+...+...|+.+.+..+++
T Consensus 192 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 192 LERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999877 34566777778888889999999887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.5e-09 Score=83.99 Aligned_cols=183 Identities=15% Similarity=0.122 Sum_probs=109.9
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCCcHH-HHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHH
Q 043311 66 EEPTDPRNLQEIFHKMRTEGLTNNAV-KMFDALSKDGLTHEALQLFAQIKDKG-HMPDVVAHTAVIEAYASAGQGKEALR 143 (257)
Q Consensus 66 ~~~~~~~~a~~~~~~m~~~~~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~ 143 (257)
...+++++|.+++....+..-.|... .++..+.+.++++.+.++++...+.. ...+...|..+-..+.+.|+.++|..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 68899999998887766544344433 47788899999999999999987543 34677889999999999999999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043311 144 VFMRMLASGVAP-NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222 (257)
Q Consensus 144 ~~~~m~~~g~~~-~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 222 (257)
.|++..+. .| |....+.++..+.. .|..+++.+++....... +.|...+..+-.+|...|+.++|...|++
T Consensus 168 ~~~~al~~--~P~~~~~~~~l~~~li~-----~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 168 DYRKALEL--DPDDPDARNALAWLLID-----MGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHH-----CCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccc
Confidence 99999875 44 57788889998888 444888888888877642 45667788999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 223 MKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 223 m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
..... +-|......+..++...|..+.|..+..+
T Consensus 240 ~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 240 ALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHS-TT-HHHHHHHHHHHT--------------
T ss_pred ccccc-ccccccccccccccccccccccccccccc
Confidence 88753 44888888999999999999999988653
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-07 Score=85.96 Aligned_cols=151 Identities=16% Similarity=0.125 Sum_probs=75.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043311 95 DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE----ALRVFMRMLASGVAPNAYTYAVLIKGLAAA 170 (257)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~ 170 (257)
.++.+.|++++|...|+...+.. +-+...+..+-..|...|++++ |...|++..+.. +.+...+..+-..+..
T Consensus 220 ~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~- 296 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIR- 296 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH-
Confidence 34444555555555555544432 1233444444555555555543 455555554431 2234455555555555
Q ss_pred cCCcchhHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhhcCCch
Q 043311 171 ADGNAKILGDAQKYLMEMVGKGMRPN-AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA-VKEALIDKRGQGFR 248 (257)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~ 248 (257)
.|++++|...++..... .|+ ...+..+...+.+.|++++|...|+++... .|+... +..+..++...|+.
T Consensus 297 ----~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~ 368 (656)
T PRK15174 297 ----TGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKT 368 (656)
T ss_pred ----CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCH
Confidence 23366666666665543 232 334445556666666666666666666553 233222 22233455666666
Q ss_pred hhHHhhhc
Q 043311 249 GVINILFG 256 (257)
Q Consensus 249 ~~~~~l~~ 256 (257)
+.|...|+
T Consensus 369 deA~~~l~ 376 (656)
T PRK15174 369 SEAESVFE 376 (656)
T ss_pred HHHHHHHH
Confidence 66666554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-07 Score=83.00 Aligned_cols=118 Identities=11% Similarity=-0.007 Sum_probs=55.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 043311 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211 (257)
Q Consensus 132 ~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 211 (257)
+...|++++|..+++.+.+..-.++...+..+...+.. .|++++|...++...... +-+...+..+-..+...|
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~-----~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G 260 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCA-----VGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSG 260 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH-----CCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 44445555555555444433212223333333344444 223555555555554431 123344445555555555
Q ss_pred CHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 212 KVDE----ARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 212 ~~~~----a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
++++ |...|++..... +-+...+..+-..+...|+.+.|..+++
T Consensus 261 ~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~ 308 (656)
T PRK15174 261 RSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQ 308 (656)
T ss_pred CchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5553 555555555432 2234455555555666666666655543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.8e-07 Score=81.54 Aligned_cols=218 Identities=15% Similarity=0.043 Sum_probs=155.1
Q ss_pred hhhcccCCCCccchhhcccCCCCCCccccc-c--ccccCCCCHHHHHHHHHHHHhCCC-CCcHH-HHHHHHHhcCChHHH
Q 043311 32 QRSLSSSSDQPTKKYVNTKSKLPPPYDPFK-K--VVDEEPTDPRNLQEIFHKMRTEGL-TNNAV-KMFDALSKDGLTHEA 106 (257)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~--~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~ll~~~~~~~~~~~a 106 (257)
......+..+.+...+.+...+.|+..... . ..+...|++++|...|+...+..- .++.. .+-..+...|++++|
T Consensus 339 ~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 418 (615)
T TIGR00990 339 TFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQA 418 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 333445666666666666656666533222 2 667789999999999998877531 22222 466778889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHH
Q 043311 107 LQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186 (257)
Q Consensus 107 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~ 186 (257)
...|+...+.. +.+...|..+-.++.+.|++++|...|++..+. .+-+...|+.+-..+...|+ +++|.+.|+
T Consensus 419 ~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~-----~~~A~~~~~ 491 (615)
T TIGR00990 419 GKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNK-----FDEAIEKFD 491 (615)
T ss_pred HHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccC-----HHHHHHHHH
Confidence 99999988752 234667778888899999999999999998865 24457888888888888444 999999999
Q ss_pred HHHhCCCC--C---CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 187 EMVGKGMR--P---NA-GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 187 ~m~~~g~~--p---~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
......-. + +. ..++.....+...|++++|.+++++..... .-+...+..+...+...|+.+.|..+|++
T Consensus 492 ~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 492 TAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 87653211 1 11 122222333445699999999999987754 23445688888999999999999988864
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.6e-07 Score=77.26 Aligned_cols=78 Identities=8% Similarity=-0.050 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhh
Q 043311 176 KILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINIL 254 (257)
Q Consensus 176 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l 254 (257)
+..+++.+..+...+. .| |...+.++-..|.+.+++++|.+.|+...+. .|+..++..+-..+.+.|+.+++..+
T Consensus 308 ~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~ 383 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAM 383 (398)
T ss_pred CChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3466666666666653 34 4455777888899999999999999999874 69999999999999999999999888
Q ss_pred hcC
Q 043311 255 FGK 257 (257)
Q Consensus 255 ~~k 257 (257)
+.+
T Consensus 384 ~~~ 386 (398)
T PRK10747 384 RRD 386 (398)
T ss_pred HHH
Confidence 753
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.7e-06 Score=76.78 Aligned_cols=179 Identities=11% Similarity=-0.038 Sum_probs=140.8
Q ss_pred CCCHHHHHHHHHHHHhCC-CCCcHH----HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHH
Q 043311 68 PTDPRNLQEIFHKMRTEG-LTNNAV----KMFDALSKDGLTHEALQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQGKEA 141 (257)
Q Consensus 68 ~~~~~~a~~~~~~m~~~~-~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a 141 (257)
.+++++|.+.|+...+.+ ..|+.. .+-..+...|++++|...|+...+. .|+ ...|..+-..+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 468899999999988865 344432 2455667889999999999998774 454 55788888889999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 043311 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLL 220 (257)
Q Consensus 142 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~ 220 (257)
...|++..+.. +-+..+|..+-..+...|+ +++|...|+...+. .| +...+..+-..+.+.|++++|...|
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~-----~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~ 456 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGE-----FAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATF 456 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999988763 3457888888888888554 99999999988764 34 4566777788888999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 221 QQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 221 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
++..+.. +-+...+..+-..+...|+.+.|...|++
T Consensus 457 ~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 457 RRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9988642 33467788888889999999999888763
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.9e-08 Score=81.67 Aligned_cols=217 Identities=14% Similarity=0.096 Sum_probs=94.4
Q ss_pred hhhhhcccCCCCccchhhcc-cCCC-CCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCC-CcHH-HHHHHHHhcCC
Q 043311 30 TLQRSLSSSSDQPTKKYVNT-KSKL-PPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLT-NNAV-KMFDALSKDGL 102 (257)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~-~~~~-~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~-~ll~~~~~~~~ 102 (257)
+.......+++..+.+.+.+ .... +|+...|-. ......++++.|.+.++.+...+.. |... .++.. ...++
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 35555667777777777743 3344 355444433 6677899999999999999886533 3333 34444 78899
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhccCCcchhHHHH
Q 043311 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG-VAPNAYTYAVLIKGLAAAADGNAKILGDA 181 (257)
Q Consensus 103 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~t~~~ll~~~~~~~~~~~~~~~~a 181 (257)
+++|.+++...-+. .++...+..++..+...++++++.++++...... .+.+...|..+-..+.+ .|+.++|
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~-----~G~~~~A 165 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ-----LGDPDKA 165 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH-----CCHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-----cCCHHHH
Confidence 99999998876554 3677788899999999999999999999987543 46688888888898999 5559999
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 182 QKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 182 ~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.++++...+. .| |....+.++..+...|+.+++.++++...... ..|...+..+-.++...|+.+.|..+|+|
T Consensus 166 ~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 166 LRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccc
Confidence 9999998864 46 46778889999999999999999998887764 55666788888999999999999988864
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.9e-07 Score=68.90 Aligned_cols=192 Identities=14% Similarity=0.035 Sum_probs=140.7
Q ss_pred hhhhhhhcccCCCCccchhhcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCCCc-H-HHHHHHHHhcCC
Q 043311 28 NATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLTNN-A-VKMFDALSKDGL 102 (257)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~p~-~-~~ll~~~~~~~~ 102 (257)
..+.......+....+...+.+.....|+...... ..+...|+++.|.+.++...+...... . ..+...+...|+
T Consensus 35 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~ 114 (234)
T TIGR02521 35 VQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK 114 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence 33444555566666666555443333444322212 777889999999999999887543222 1 246778889999
Q ss_pred hHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHH
Q 043311 103 THEALQLFAQIKDKGHM-PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDA 181 (257)
Q Consensus 103 ~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a 181 (257)
+++|.+.|....+.... .....+..+-..+...|++++|...|++..+.. +.+...+..+...+...|+ +++|
T Consensus 115 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~-----~~~A 188 (234)
T TIGR02521 115 YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQ-----YKDA 188 (234)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCC-----HHHH
Confidence 99999999999875322 234567778888999999999999999988763 3356778888888888555 9999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
...+++.... .+.+...+..+...+...|+.+.|..+.+.+...
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999998875 3445667778888889999999999998887653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=5e-06 Score=77.91 Aligned_cols=180 Identities=14% Similarity=0.093 Sum_probs=103.3
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCCc-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043311 66 EEPTDPRNLQEIFHKMRTEGLTNN-AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRV 144 (257)
Q Consensus 66 ~~~~~~~~a~~~~~~m~~~~~~p~-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 144 (257)
.+.|++++|...|+.+......+. ...+..++.+.|+.++|...|+...+.. ..+...+..+...+...|++++|...
T Consensus 520 ~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~ 598 (987)
T PRK09782 520 YQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALND 598 (987)
T ss_pred HHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 456666666666666544322111 1123445566666666666666665542 11222222222233344677777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043311 145 FMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN-AGTYTAVFEAFVRAQKVDEARGLLQQM 223 (257)
Q Consensus 145 ~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m 223 (257)
|++..+. .|+...|..+-..+.+. |+.++|...|+..... .|+ ...++.+-..+...|++++|...+++.
T Consensus 599 ~~~AL~l--~P~~~a~~~LA~~l~~l-----G~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 599 LTRSLNI--APSANAYVARATIYRQR-----HNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred HHHHHHh--CCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7666653 45566666666666663 3377777777776653 343 344555555667777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 224 KAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 224 ~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
.+.. +-+...+..+-.++...|+.+.|+..|+
T Consensus 670 L~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 670 HKGL-PDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6642 2245566666667777777777776665
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.5e-06 Score=73.03 Aligned_cols=217 Identities=12% Similarity=0.018 Sum_probs=138.6
Q ss_pred cccCCCCccchhhcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCCCcH-H--HHHHHHHhcCChHHHHH
Q 043311 35 LSSSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLTNNA-V--KMFDALSKDGLTHEALQ 108 (257)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~--~ll~~~~~~~~~~~a~~ 108 (257)
...+++..+.+...+.....|+...+.+ .+..+.|+++.+.+.+....+..-.+.. . +....+...|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 4456666666665555555554333222 5566778888888888887664322221 1 24666677888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-------H---------------------
Q 043311 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT-------Y--------------------- 160 (257)
Q Consensus 109 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t-------~--------------------- 160 (257)
.++.+.+.. +-+...+..+...+...|++++|.+++..+.+.++.+.... +
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887763 22456777888888888888888888888887754322211 1
Q ss_pred -------------HHHHHHHHhccCCcchhHHHHHHHHHHHHhCC----------------------------------C
Q 043311 161 -------------AVLIKGLAAAADGNAKILGDAQKYLMEMVGKG----------------------------------M 193 (257)
Q Consensus 161 -------------~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g----------------------------------~ 193 (257)
..+...+.. .|..+.|.+++++..+.. .
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~-----~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLID-----CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHH-----CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 111111222 233444444444433210 1
Q ss_pred CCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 194 RPNAG---TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 194 ~p~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.|+.. ...++-..+.+.|++++|.+.|+........|+..++..+-..+...|+.+.|.++|+|
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333 34466677888899999999999655555678998899999999999999999988864
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.6e-08 Score=53.59 Aligned_cols=34 Identities=32% Similarity=0.629 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 043311 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231 (257)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 231 (257)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3799999999999999999999999999999987
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.3e-08 Score=53.53 Aligned_cols=33 Identities=36% Similarity=0.518 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 155 (257)
.+||++|.+|++.|+++.|+++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.1e-07 Score=60.65 Aligned_cols=86 Identities=14% Similarity=0.274 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhccCCc---chhHHHHHHHHHHHHhCCCCCCHHH
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGV-APNAYTYAVLIKGLAAAADGN---AKILGDAQKYLMEMVGKGMRPNAGT 199 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~t~~~ll~~~~~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~ 199 (257)
|-...|.-|...+++.....+|+.+++.|+ .|+..+|+.++++.++..-.+ .+.+-..+.++++|...+++|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556666667888888888888888887 778888888888776543211 1235566677777777777888888
Q ss_pred HHHHHHHHHH
Q 043311 200 YTAVFEAFVR 209 (257)
Q Consensus 200 ~~~li~~~~~ 209 (257)
|+.++....+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8777776654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.7e-08 Score=53.47 Aligned_cols=34 Identities=35% Similarity=0.654 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 156 (257)
.+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688888888888888888888888888888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.6e-08 Score=52.71 Aligned_cols=33 Identities=36% Similarity=0.552 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 043311 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230 (257)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 230 (257)
.|||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888887
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2e-06 Score=68.73 Aligned_cols=212 Identities=12% Similarity=0.030 Sum_probs=137.9
Q ss_pred cccCCCCccchhhcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCCCcHH------HHHHHHHhcCChHH
Q 043311 35 LSSSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLTNNAV------KMFDALSKDGLTHE 105 (257)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------~ll~~~~~~~~~~~ 105 (257)
+-+..++++-..+.......|....... ..+.+.|..+.|+++...+.++.-.+... .|-.-|.+.|-++.
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 4466777777776665556665444444 88999999999999999999865544433 36778889999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhccCCcchhHHHH
Q 043311 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA----YTYAVLIKGLAAAADGNAKILGDA 181 (257)
Q Consensus 106 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~t~~~ll~~~~~~~~~~~~~~~~a 181 (257)
|+.+|..+.+.|. --...-.-|+..|-...+|++|.++-+++.+.|-.+.. ..|.-+-..+.. ...++.|
T Consensus 126 AE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~-----~~~~d~A 199 (389)
T COG2956 126 AEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA-----SSDVDRA 199 (389)
T ss_pred HHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh-----hhhHHHH
Confidence 9999999987532 23456777899999999999999999999876544322 122222222222 2235666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhh
Q 043311 182 QKYLMEMVGKGMRPNAGTYTAVF-EAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINIL 254 (257)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l 254 (257)
..++..-.+. .|+.+--++++ +.+...|++..|.+.++...+.+..--+.+...|..+|...|..+.....
T Consensus 200 ~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 200 RELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred HHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6666655543 23322222222 44556666666666666666665544555666666666666666555443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.5e-06 Score=74.97 Aligned_cols=221 Identities=10% Similarity=-0.016 Sum_probs=140.6
Q ss_pred hhhhcccCCCCccchhhcccCCCCCCcccccc-----ccccCCCCHHHHHHHHHHHHhCCCC-CcHH-HHHHHHHhcCCh
Q 043311 31 LQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK-----VVDEEPTDPRNLQEIFHKMRTEGLT-NNAV-KMFDALSKDGLT 103 (257)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-----~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~-~ll~~~~~~~~~ 103 (257)
+......+....+..++.+.- .|....+.. ..+...|+++.|.++|+.+.+..-. |+.. .+...+...++.
T Consensus 75 l~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 75 LQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG 152 (822)
T ss_pred HHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH
Confidence 333334466666666655554 332222222 3667779999999999988875322 3322 356777888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC-----------
Q 043311 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD----------- 172 (257)
Q Consensus 104 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~----------- 172 (257)
++|++.++.+.+. .|+...+-.+...+...++..+|++.++++.+.+ +-+...+..++.+..+.|-
T Consensus 153 ~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~ 229 (822)
T PRK14574 153 GVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN 229 (822)
T ss_pred HHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 9999988888775 4666666445444444556656899999988763 3356666666666666665
Q ss_pred -------------------------------------------------------------------------CcchhHH
Q 043311 173 -------------------------------------------------------------------------GNAKILG 179 (257)
Q Consensus 173 -------------------------------------------------------------------------~~~~~~~ 179 (257)
...+++.
T Consensus 230 p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~ 309 (822)
T PRK14574 230 PNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTA 309 (822)
T ss_pred ccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 0114566
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHhhcCCchhhHHhh
Q 043311 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG-----FVPDEKAVKEALIDKRGQGFRGVINIL 254 (257)
Q Consensus 180 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~t~~~ll~~~~~~g~~~~~~~l 254 (257)
++.+.|+.|...|.+....+-.++.++|...++.++|..+|+.+.... ..++......|..++...+.+++|..+
T Consensus 310 ~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~ 389 (822)
T PRK14574 310 DLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQF 389 (822)
T ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHH
Confidence 666666666666655455566677777777777777777777775432 122333356677777777777777776
Q ss_pred hc
Q 043311 255 FG 256 (257)
Q Consensus 255 ~~ 256 (257)
.+
T Consensus 390 l~ 391 (822)
T PRK14574 390 AV 391 (822)
T ss_pred HH
Confidence 65
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-05 Score=74.60 Aligned_cols=184 Identities=11% Similarity=0.014 Sum_probs=140.7
Q ss_pred ccCCCCHHHHHHHHHHHHhCCC-CCcHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCh
Q 043311 65 DEEPTDPRNLQEIFHKMRTEGL-TNNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMP---DVVAHTAVIEAYASAGQG 138 (257)
Q Consensus 65 ~~~~~~~~~a~~~~~~m~~~~~-~p~~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~~~~ 138 (257)
+...|++++|...|+.+.+.+- .|+.. .+-..|...|++++|..+|+...+..... ....+..+..++...|++
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 4567999999999999998763 35532 26678999999999999999987643211 134566777788999999
Q ss_pred HHHHHHHHHHHHCC-----------CCCC---HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043311 139 KEALRVFMRMLASG-----------VAPN---AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204 (257)
Q Consensus 139 ~~a~~~~~~m~~~g-----------~~~~---~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 204 (257)
++|..+++.+.+.. -.|+ ...+..+...+.. .|+.++|.++++++... .+-+...+..+.
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~-----~g~~~eA~~~l~~al~~-~P~n~~l~~~lA 400 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY-----SNDLPQAEMRARELAYN-APGNQGLRIDYA 400 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 99999999998652 1123 1244556667777 44499999999998764 244567888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 205 EAFVRAQKVDEARGLLQQMKAKGFVPD-EKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
..+...|++++|++.+++..... |+ ...+......+...|+.+.|+.+++
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999999988753 55 5666666678899999999998875
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-06 Score=59.49 Aligned_cols=77 Identities=19% Similarity=0.311 Sum_probs=68.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGH-MPDVVAHTAVIEAYASAG--------QGKEALRVFMRMLASGVAPNAYTYAVL 163 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~g~~~~~~t~~~l 163 (257)
-|..|...+++.....+|+.++++|+ .|++.+|+.++.+.++.. .+-..+.+|++|...+++|+..||+++
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 56677777999999999999999999 999999999999988753 356788999999999999999999999
Q ss_pred HHHHHh
Q 043311 164 IKGLAA 169 (257)
Q Consensus 164 l~~~~~ 169 (257)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 998865
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.1e-06 Score=79.12 Aligned_cols=215 Identities=14% Similarity=0.093 Sum_probs=143.4
Q ss_pred hhhhhcccCCCCccchhhcccCCCCCCcccc--cc-ccccCCCCHHHHHHHHHHHHhCC-CCCcHH-H------------
Q 043311 30 TLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF--KK-VVDEEPTDPRNLQEIFHKMRTEG-LTNNAV-K------------ 92 (257)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~-~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~-~------------ 92 (257)
........+....+...+.+...+.|+.... .+ ..+.+.|++++|...++...+.. -.|... .
T Consensus 467 ~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~ 546 (1157)
T PRK11447 467 QAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDR 546 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHH
Confidence 3344445566666655555554555553322 22 56677777777777777766532 122111 1
Q ss_pred --------------------------------HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 93 --------------------------------MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 93 --------------------------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
+...+...|+.++|.++++. .+.+...+..+-..+.+.|++++
T Consensus 547 ~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~ 621 (1157)
T PRK11447 547 AALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAA 621 (1157)
T ss_pred HHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHH
Confidence 12334455555555555541 23455667778888899999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGL 219 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~ 219 (257)
|...|++..+.. +.+...+..+...+...|+ +++|.+.++...+. .| +...+..+-..+...|++++|.++
T Consensus 622 A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~-----~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~ 693 (1157)
T PRK11447 622 ARAAYQRVLTRE-PGNADARLGLIEVDIAQGD-----LAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRT 693 (1157)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999988763 4467888999999999444 99999999987653 34 345566677788899999999999
Q ss_pred HHHHHHCCC--CC---CHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 220 LQQMKAKGF--VP---DEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 220 ~~~m~~~g~--~p---~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
++++....- .| +...+..+-..+...|+.+.|..+|++
T Consensus 694 ~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 694 FNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999987532 22 234555566778899999999988753
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3e-05 Score=71.44 Aligned_cols=187 Identities=13% Similarity=0.075 Sum_probs=148.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCcHH--HHHHHHHhcCChHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHh
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNNAV--KMFDALSKDGLTHEALQLFAQIKDKG-----HMPDVVAHTAVIEAYAS 134 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~--~ll~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~ 134 (257)
.++...|+...|.+-|+.+...+. .|+.. .+-++|...+.+++|..+|....+.. ..++......|..+|..
T Consensus 300 ~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld 379 (822)
T PRK14574 300 GALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE 379 (822)
T ss_pred HHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh
Confidence 778899999999999999999885 57765 59999999999999999999986643 23455557889999999
Q ss_pred cCChHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHH
Q 043311 135 AGQGKEALRVFMRMLASGV-------------APNAY-TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200 (257)
Q Consensus 135 ~~~~~~a~~~~~~m~~~g~-------------~~~~~-t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 200 (257)
.+++++|..+++++.+.-- -||-. -+..++..+...|+ +++|++.++++... -+-|....
T Consensus 380 ~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd-----l~~Ae~~le~l~~~-aP~n~~l~ 453 (822)
T PRK14574 380 SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND-----LPTAQKKLEDLSST-APANQNLR 453 (822)
T ss_pred cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHh-CCCCHHHH
Confidence 9999999999999997311 11222 23345666777444 99999999999764 34478889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
..+-+.+...|.+..|+..++..... -+-+..+......++...|++..++.+.+
T Consensus 454 ~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~ 508 (822)
T PRK14574 454 IALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTD 508 (822)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999999999776655 23355667777788889999999987764
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-06 Score=65.75 Aligned_cols=104 Identities=16% Similarity=0.242 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCC
Q 043311 120 PDVVAHTAVIEAYASA-----GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194 (257)
Q Consensus 120 p~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~ 194 (257)
-|-.+|..+|+.|.+. |..+=...-+..|.+.|+.-|..+|+.||+.+=+ |... -..+|+.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv------p~n~fQ~~------ 111 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV------PRNFFQAE------ 111 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc------cccHHHHH------
Confidence 3555666666665543 4455555556666666666666666666665544 1100 00001110
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCc
Q 043311 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247 (257)
Q Consensus 195 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 247 (257)
...|- .+-+.|++++++|++.|+.||..|+..|+..+.+.+.
T Consensus 112 ---------F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 ---------FMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---------hccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 00000 1235666666666666666666666666666665554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=5e-05 Score=71.38 Aligned_cols=178 Identities=13% Similarity=-0.005 Sum_probs=134.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCcHH-H--HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043311 67 EPTDPRNLQEIFHKMRTEGLTNNAV-K--MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALR 143 (257)
Q Consensus 67 ~~~~~~~a~~~~~~m~~~~~~p~~~-~--ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 143 (257)
..+++++|...|....... |+.. . +...+.+.|++++|...|+.+... .|+...+..+-.++.+.|+.++|..
T Consensus 488 ~~~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~ 563 (987)
T PRK09782 488 RDTLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDR 563 (987)
T ss_pred HhCCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHH
Confidence 3488888999877777643 4433 2 344556899999999999987654 4555567777788899999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043311 144 VFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223 (257)
Q Consensus 144 ~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 223 (257)
.|++..+.+ +.+...+..+...... .|++++|...++...+. .|+...|..+-..+.+.|++++|...|++.
T Consensus 564 ~l~qAL~l~-P~~~~l~~~La~~l~~-----~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~A 635 (987)
T PRK09782 564 WLQQAEQRG-LGDNALYWWLHAQRYI-----PGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAA 635 (987)
T ss_pred HHHHHHhcC-CccHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999998764 2233333333334434 34599999999998764 578888999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 224 KAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 224 ~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.... +-+...+..+-.++...|+.+.|..+|++
T Consensus 636 L~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 636 LELE-PNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8864 33556666676789999999999888753
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=5e-05 Score=67.64 Aligned_cols=170 Identities=14% Similarity=-0.075 Sum_probs=118.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCC-CcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHH
Q 043311 67 EPTDPRNLQEIFHKMRTEGLT-NNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQGKEALR 143 (257)
Q Consensus 67 ~~~~~~~a~~~~~~m~~~~~~-p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~ 143 (257)
..+++++|...+++..+.+-. +... .+-..+...|++++|...|++..+.. |+ ...|..+-.+|...|++++|..
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 456689999999988885322 2222 24456678899999999999988853 54 5678888888999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043311 144 VFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN-AGTYTAVFEAFVRAQKVDEARGLLQQ 222 (257)
Q Consensus 144 ~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~ 222 (257)
.+++..+.+-. +...+..+...+.. .|++++|...+++..... .|+ ...+..+-..+...|+.++|...+.+
T Consensus 394 ~~~~Al~l~P~-~~~~~~~~~~~~~~-----~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~ 466 (553)
T PRK12370 394 TINECLKLDPT-RAAAGITKLWITYY-----HTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKE 466 (553)
T ss_pred HHHHHHhcCCC-ChhhHHHHHHHHHh-----ccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999876322 22233334444555 344899999998876542 343 34466677778899999999999998
Q ss_pred HHHCCCCCCHHHHHHHH-HHhhcCCc
Q 043311 223 MKAKGFVPDEKAVKEAL-IDKRGQGF 247 (257)
Q Consensus 223 m~~~g~~p~~~t~~~ll-~~~~~~g~ 247 (257)
+... .|+..+....+ ..+...|+
T Consensus 467 ~~~~--~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 467 ISTQ--EITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred hhhc--cchhHHHHHHHHHHHhccHH
Confidence 7554 44544444444 45566664
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.9e-06 Score=72.55 Aligned_cols=190 Identities=12% Similarity=0.053 Sum_probs=91.9
Q ss_pred cccchhhhhhhhcccCCCCccchhhcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCCCcHH----HHHH
Q 043311 23 TNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLTNNAV----KMFD 95 (257)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~ll~ 95 (257)
+...++.+--.+..++.....-..+.+.-.+.|+...--+ ..+...+.+++|...|.+... ..|+.. .+-.
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~ 294 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLAC 294 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEE
Confidence 3334444444444445444444445555555555332211 455555555665555555444 234432 1334
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCc
Q 043311 96 ALSKDGLTHEALQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~ 174 (257)
.|...|.++.|+..|++..+. +|+ ...|+.|-.++-..|++.+|.+.|..-.... .--....+.|-..+..
T Consensus 295 iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E----- 366 (966)
T KOG4626|consen 295 IYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYRE----- 366 (966)
T ss_pred EEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH-----
Confidence 455566666666666655542 343 3456666666666666666666665555431 1123344455555554
Q ss_pred chhHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043311 175 AKILGDAQKYLMEMVGKGMRPNA-GTYTAVFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 175 ~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~ 224 (257)
.|.++.|..+|....+ +.|.. ..+|.|-..|-..|++++|...|++..
T Consensus 367 ~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred hccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 3335555555444332 22332 234444444444555555555554443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.6e-05 Score=63.97 Aligned_cols=57 Identities=9% Similarity=-0.067 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
-.+.+|=.-|.+.+.|.+|...|+...+ .+|+..+|+.+-.++...|+.+.++.+++
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHH
Confidence 5667778889999999999999996655 57999999999999999999999998764
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.6e-05 Score=76.75 Aligned_cols=186 Identities=12% Similarity=0.052 Sum_probs=123.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+...|++++|.+.|++..+..-. |.. ..+...|.+.|++++|...|+...+... -+...+..+-..+...++.++
T Consensus 469 ~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~ 547 (1157)
T PRK11447 469 EALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRA 547 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHH
Confidence 6677899999999999999885322 221 2478889999999999999999876421 133333333333445555555
Q ss_pred HHHHHHHHHHCC---------------------------------------CCCCHHHHHHHHHHHHhccCCcchhHHHH
Q 043311 141 ALRVFMRMLASG---------------------------------------VAPNAYTYAVLIKGLAAAADGNAKILGDA 181 (257)
Q Consensus 141 a~~~~~~m~~~g---------------------------------------~~~~~~t~~~ll~~~~~~~~~~~~~~~~a 181 (257)
|...++.+.... .+.+...+..+-..+.+. |+.++|
T Consensus 548 Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~-----g~~~~A 622 (1157)
T PRK11447 548 ALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQR-----GDYAAA 622 (1157)
T ss_pred HHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHc-----CCHHHH
Confidence 555554432111 133444555566666663 448888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP-DEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.+.|+...+.. +-+...+..+...+...|++++|.+.++..... .| +..+...+-.++...|+.+.|.++|++
T Consensus 623 ~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 623 RAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 88888877642 235667888888888888888888888877653 33 344555566677788888888887753
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.9e-06 Score=70.96 Aligned_cols=122 Identities=11% Similarity=0.073 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC
Q 043311 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS--GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196 (257)
Q Consensus 119 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 196 (257)
..+......+++.+....+++.+..++.+.... ....-..|..++|+.|.+.|. .+.+..++..=...|+=||
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~-----~~~~l~~L~n~~~yGiF~D 137 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGA-----EDELLELLKNRLQYGIFPD 137 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCC-----HHHHHHHHhChhhcccCCC
Confidence 334455555555555555566666666555543 222223344466666666333 5566666555555666666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 043311 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245 (257)
Q Consensus 197 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 245 (257)
..|||.||+.+.+.|++..|.++..+|...+.-.+..|+.--+.+|.+-
T Consensus 138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 138 NFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 6666666666666666666666666666555555555555555555443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.6e-05 Score=63.14 Aligned_cols=210 Identities=11% Similarity=0.084 Sum_probs=142.2
Q ss_pred cccCCCCccchhhcccCCCCCC-cccccc--ccccCCCCHHHHHHHHHHHHhCCCCCcHH---HHHHHHHhcCChHHHHH
Q 043311 35 LSSSSDQPTKKYVNTKSKLPPP-YDPFKK--VVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQ 108 (257)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~p~-~~~~~~--~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~ll~~~~~~~~~~~a~~ 108 (257)
...+++..+.+...+.....+. ...+.. ....+.|+++.+.+.+.++.+..-.+... .....+...|+++.|..
T Consensus 95 ~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred HhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 3356777766665554333211 122222 55588999999999999998754333322 23567888999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhccCCcchhHHHH
Q 043311 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA-------YTYAVLIKGLAAAADGNAKILGDA 181 (257)
Q Consensus 109 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~t~~~ll~~~~~~~~~~~~~~~~a 181 (257)
.++.+.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++....... ..+..
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~-----~~~~l 248 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ-----GSEGL 248 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc-----CHHHH
Confidence 999998864 335678899999999999999999999999988655333 13333444433422 24566
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
.++++.+... .+.+......+...+...|+.++|.+++++..+. .||... .++.+....++.+.+.+..
T Consensus 249 ~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~ 317 (398)
T PRK10747 249 KRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVL 317 (398)
T ss_pred HHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHH
Confidence 6666665432 3457778889999999999999999999998874 555522 2334444557766665544
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.7e-07 Score=48.05 Aligned_cols=31 Identities=39% Similarity=0.567 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGV 153 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 153 (257)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.8e-07 Score=48.00 Aligned_cols=31 Identities=19% Similarity=0.530 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 043311 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228 (257)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 228 (257)
+|||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3788888888888888888888888888775
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.2e-05 Score=66.00 Aligned_cols=176 Identities=10% Similarity=-0.017 Sum_probs=127.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHH----HHHHHHH---------hcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 043311 69 TDPRNLQEIFHKMRTEGLTNNAV----KMFDALS---------KDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYAS 134 (257)
Q Consensus 69 ~~~~~a~~~~~~m~~~~~~p~~~----~ll~~~~---------~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~ 134 (257)
+++++|..+|++..+. .|+.. .+-.++. ..+++++|...++...+. .| +...|..+-..+..
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--DHNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHH
Confidence 4567889999888874 34432 1222222 234578999999988875 34 56677777778889
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCH
Q 043311 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG-TYTAVFEAFVRAQKV 213 (257)
Q Consensus 135 ~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~ 213 (257)
.|++++|...|++..+.+ +.+...|..+-..+.. .|++++|...++...+. .|+.. .+..+...+...|++
T Consensus 351 ~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~-----~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~ 422 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFM-----AGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGI 422 (553)
T ss_pred ccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCH
Confidence 999999999999998864 3356778888888888 45599999999998864 45432 333445557778999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 214 DEARGLLQQMKAKGFVPD-EKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 214 ~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
++|...+++..... .|+ ...+..+-..+...|+.+.|...+.+
T Consensus 423 eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~ 466 (553)
T PRK12370 423 DDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKE 466 (553)
T ss_pred HHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999987654 343 44456666677889999999988753
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.1e-05 Score=69.25 Aligned_cols=169 Identities=13% Similarity=0.035 Sum_probs=129.9
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCC------cHHHHHHHHHhcCChHHHHHHHHHHHhCC-----------CCCC---H
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTN------NAVKMFDALSKDGLTHEALQLFAQIKDKG-----------HMPD---V 122 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p------~~~~ll~~~~~~~~~~~a~~~~~~m~~~g-----------~~p~---~ 122 (257)
..+...|++++|...|+.+.+..-.. ....+..++...|++++|..+++.+.+.. -.|+ .
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 78889999999999999987643211 12246778899999999999999998752 1233 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC-HHHHH
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN-AGTYT 201 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~ 201 (257)
..+..+...+...|+.++|.++++++... .+-+...+..+...+...|+ .++|.+.++..... .|+ ...+-
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~-----~~~A~~~l~~al~l--~Pd~~~l~~ 431 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGW-----PRAAENELKKAEVL--EPRNINLEV 431 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhh--CCCChHHHH
Confidence 35567778889999999999999999876 35567888888888888444 99999999988864 465 55666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043311 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241 (257)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 241 (257)
.....+.+.|++++|+.+++++... .|+....-.+=..
T Consensus 432 ~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~ 469 (765)
T PRK10049 432 EQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARA 469 (765)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 6777889999999999999999984 4555544444333
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.4e-05 Score=63.43 Aligned_cols=186 Identities=8% Similarity=-0.050 Sum_probs=124.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHHH--HHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCh
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKM--FDALSKDGLTHEALQLFAQIKDKGHMPDV--VAHTAVIEAYASAGQG 138 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~l--l~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~~ 138 (257)
......|+++.|.+.+....+..-.|-..-+ -.+..+.|+.+.|.+.+.+..+.. |+. ..--..-..+...|++
T Consensus 92 lla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 92 LLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCH
Confidence 5566789999999999887776444444433 456677899999999999987653 443 3444457778889999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HHcCCHHH
Q 043311 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF---VRAQKVDE 215 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~---~~~~~~~~ 215 (257)
+.|...++.+.+.. +-+...+..+...+...|+ ++.+.++++.+.+.++.++......-..++ ...+..+.
T Consensus 170 ~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d-----~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 170 HAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGA-----WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999875 4467788899999999555 999999999988876543322211111111 22222222
Q ss_pred HHHHHHHHHHCC---CCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 216 ARGLLQQMKAKG---FVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 216 a~~~~~~m~~~g---~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+.+.+..+.... .+.+...+..+...+...|+.+.|.++.+
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~ 287 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIF 287 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 223333333321 11366677777777777777777776654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.28 E-value=9e-06 Score=66.06 Aligned_cols=148 Identities=15% Similarity=0.130 Sum_probs=95.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcc
Q 043311 96 ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~ 175 (257)
.+...|++++|++++..- -+.......+..|.+.++++.|.+.++.|.+.+ .| .+...+..++.....+ .
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g-~ 180 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATG-G 180 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHT-T
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhC-c
Confidence 345567788887776542 356677777788888888888888888887642 23 4445556655543321 1
Q ss_pred hhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCch-hhHHhh
Q 043311 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR-GVINIL 254 (257)
Q Consensus 176 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~~~~l 254 (257)
+.+.+|..+|+++.+. ..++..+.|.+.-++...|++++|.+++.+..+.. .-|..|+..++..+...|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3477888888887654 55677777888888888888888888888866543 33566777777777777766 445444
Q ss_pred h
Q 043311 255 F 255 (257)
Q Consensus 255 ~ 255 (257)
+
T Consensus 259 l 259 (290)
T PF04733_consen 259 L 259 (290)
T ss_dssp H
T ss_pred H
Confidence 3
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.6e-06 Score=62.47 Aligned_cols=71 Identities=17% Similarity=0.277 Sum_probs=55.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------ChHHHHHHHHHHHHCCCCCCHHHHHH
Q 043311 99 KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG----------------QGKEALRVFMRMLASGVAPNAYTYAV 162 (257)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~----------------~~~~a~~~~~~m~~~g~~~~~~t~~~ 162 (257)
+.|+++-....+..|.+-|+.-|..+|+.||+.+=+.. +-+-|.+++++|...|+.||..|+..
T Consensus 64 RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ 143 (228)
T PF06239_consen 64 RRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQM 143 (228)
T ss_pred CcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 46899999999999999999999999999999987643 23456666666666666666666666
Q ss_pred HHHHHHh
Q 043311 163 LIKGLAA 169 (257)
Q Consensus 163 ll~~~~~ 169 (257)
+++.+++
T Consensus 144 ll~iFG~ 150 (228)
T PF06239_consen 144 LLNIFGR 150 (228)
T ss_pred HHHHhcc
Confidence 6666665
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.4e-05 Score=71.56 Aligned_cols=133 Identities=26% Similarity=0.306 Sum_probs=101.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------------------------CCCCCHHHHHHH
Q 043311 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS------------------------GVAPNAYTYAVL 163 (257)
Q Consensus 108 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------------------------g~~~~~~t~~~l 163 (257)
.++-.++..|+.|+-+||..+|.-|+..|+++.|- +|.-|+-. --.|...||+.+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 56788999999999999999999999999998887 77666431 125678999999
Q ss_pred HHHHHhccC---------------------------------------------------CcchhHHHHHHHH-------
Q 043311 164 IKGLAAAAD---------------------------------------------------GNAKILGDAQKYL------- 185 (257)
Q Consensus 164 l~~~~~~~~---------------------------------------------------~~~~~~~~a~~~~------- 185 (257)
+.+|..+|| ...|.|+.+.+++
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 999999998 0113333333332
Q ss_pred ---------HHH-------------HhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043311 186 ---------MEM-------------VGKGM-RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241 (257)
Q Consensus 186 ---------~~m-------------~~~g~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 241 (257)
+++ .+.+. .|+..+|.+++.....+|+.+.|..++.+|.++|+..+..=|-.++.+
T Consensus 170 ~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g 248 (1088)
T KOG4318|consen 170 WNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG 248 (1088)
T ss_pred ccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc
Confidence 111 11112 589999999999999999999999999999999998888766666655
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00029 Score=61.39 Aligned_cols=195 Identities=15% Similarity=0.091 Sum_probs=151.5
Q ss_pred ccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhC-CCCCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-H
Q 043311 49 TKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTE-GLTNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPD-V 122 (257)
Q Consensus 49 ~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~ 122 (257)
+...+.|+.-.... ..|-..|+.+.|...|++..+. .--|++. .|-.++-..|++.+|.+.|...... .|+ .
T Consensus 277 rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~ha 354 (966)
T KOG4626|consen 277 RALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHA 354 (966)
T ss_pred HHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccH
Confidence 33455666444333 7888999999999999998874 3345544 5888888999999999999988774 343 5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHH-HHH
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG-TYT 201 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~ 201 (257)
...+.|=..|..-|.++.|..+|..-.+-. +--...++.|-..|-. .|++++|...+++... +.|+.. .|+
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kq-----qgnl~~Ai~~Ykealr--I~P~fAda~~ 426 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQ-----QGNLDDAIMCYKEALR--IKPTFADALS 426 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHh-----cccHHHHHHHHHHHHh--cCchHHHHHH
Confidence 678889999999999999999998887642 2234678888888888 5559999999988764 677763 688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCchhhHHhhh
Q 043311 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPD-EKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
.+=..|-..|+.+.|...+.+...- .|. ...++.|-..+..+|+...|..-+
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 8888888889999999999988764 343 567888888899999988887655
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00019 Score=60.27 Aligned_cols=182 Identities=13% Similarity=0.175 Sum_probs=106.7
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNA--VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
...-.+|+++.|.+.|++.......-.. ..+--.+-+.|+.++|++.|-.+..- +.-+..+.--+-..|-...+...
T Consensus 498 n~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aq 576 (840)
T KOG2003|consen 498 NIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQ 576 (840)
T ss_pred ceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHH
Confidence 4555689999999999988875322111 11223445566777777766554321 01123333333334444444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCC-----------------------------cchhHHHHHHHHHHHHhC
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG-----------------------------NAKILGDAQKYLMEMVGK 191 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~-----------------------------~~~~~~~a~~~~~~m~~~ 191 (257)
|.+++.+.-.. ++.|.....-+-..|-+-||- +-..++++..+|+...-
T Consensus 577 aie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal- 654 (840)
T KOG2003|consen 577 AIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL- 654 (840)
T ss_pred HHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-
Confidence 44444333222 333444444444444444430 03446777777776532
Q ss_pred CCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchh
Q 043311 192 GMRPNAGTYTAVFEAFVR-AQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249 (257)
Q Consensus 192 g~~p~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 249 (257)
+.|+..-|..+|..|.+ .|++..|.++|+...+. ++-|...+.-|++-|..-|..+
T Consensus 655 -iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 655 -IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred -cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 67889999988877664 68999999999887654 5667777777778787777654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.9e-05 Score=66.87 Aligned_cols=107 Identities=19% Similarity=0.215 Sum_probs=78.3
Q ss_pred ccccCCCCHHHHHHHHHHHHhCC----CCCcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEG----LTNNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~----~~p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 137 (257)
..+...-+++.+..++....... +.|.. .++++.|.+.|..+.+++++..=.+.|+-||..++|.||+.+.+.|+
T Consensus 74 n~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~ 153 (429)
T PF10037_consen 74 NNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGN 153 (429)
T ss_pred hhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhccc
Confidence 45555666777777777666531 22332 25788888888888888888887888888888888888888888888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
+..|.++..+|...+...+..|+...+.+|.+
T Consensus 154 ~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 154 YKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 88888888887777666777777777777777
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00011 Score=58.91 Aligned_cols=190 Identities=10% Similarity=0.047 Sum_probs=132.2
Q ss_pred hhhcccCCCCccchh---hcccCCCCCCcccccc----ccccCCCCHHHHHHHHHHHHhCCC-CCcHH-HHHHHHHhcCC
Q 043311 32 QRSLSSSSDQPTKKY---VNTKSKLPPPYDPFKK----VVDEEPTDPRNLQEIFHKMRTEGL-TNNAV-KMFDALSKDGL 102 (257)
Q Consensus 32 ~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~----~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~ll~~~~~~~~ 102 (257)
..+-+.+..+++-++ +.+.++++-+...+.+ .-|-..|-++.|..+|..+.+.|- .+.+. .|+..|-+..+
T Consensus 77 nLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~tre 156 (389)
T COG2956 77 NLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATRE 156 (389)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhH
Confidence 334445555555433 7777777666544444 566789999999999999998553 44443 59999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhH
Q 043311 103 THEALQLFAQIKDKGHMPDV----VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178 (257)
Q Consensus 103 ~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 178 (257)
|++|.++-+.+.+.+-++.. ..|.-+-..+.-..+.+.|..++.+-.+.+- -....-..+=+.... .|.+
T Consensus 157 W~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~-----~g~y 230 (389)
T COG2956 157 WEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADK-KCVRASIILGRVELA-----KGDY 230 (389)
T ss_pred HHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc-cceehhhhhhHHHHh-----ccch
Confidence 99999999988887544432 2355555566667788889988888776531 122332333344455 3448
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 043311 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227 (257)
Q Consensus 179 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 227 (257)
+.|.+.++...+.+..--..+...|..+|...|+.++....+.++.+..
T Consensus 231 ~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 231 QKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 8888888888876544455678888889999999988888888887653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00071 Score=56.93 Aligned_cols=124 Identities=10% Similarity=0.116 Sum_probs=86.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
|-+.|-+.|+-..|.+.+-+--.. ++-++.+..=|-.-|....-++++..+|++-.- +.|+..-|..++..|.+
T Consensus 598 l~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~r--- 671 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFR--- 671 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHH---
Confidence 344455555555555544333222 334555555555666666778888888877543 79999999999999976
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
+.|++.+|..++.+.... ++-|......|++.+...|. .++.++-+++.+
T Consensus 672 -rsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~~klek 721 (840)
T KOG2003|consen 672 -RSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYADKLEK 721 (840)
T ss_pred -hcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHHHHHH
Confidence 366799999999998864 77788888889998888774 566666666554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00013 Score=58.82 Aligned_cols=154 Identities=14% Similarity=0.052 Sum_probs=122.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhc
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV-LIKGLAAA 170 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~-ll~~~~~~ 170 (257)
.+-++|.+.|.+.+|.+-|+.-.+. .|-+.||-.|-++|.+..+.+.|+.+|.+-.+. .|-.+||-. +.+.+..
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea- 302 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA- 302 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH-
Confidence 3889999999999999999877664 577888999999999999999999999987764 666677654 4445555
Q ss_pred cCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhh
Q 043311 171 ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250 (257)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 250 (257)
.++.+++.+++....+.. ..+++...++-.+|.=.++.+.|+++|+++...|+. +...|+.+--.|.-.+.++.
T Consensus 303 ----m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 303 ----MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred ----HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 444889999998877642 335666777777888889999999999999999986 66788888888888887777
Q ss_pred HHhhhc
Q 043311 251 INILFG 256 (257)
Q Consensus 251 ~~~l~~ 256 (257)
+..-|.
T Consensus 377 ~L~sf~ 382 (478)
T KOG1129|consen 377 VLPSFQ 382 (478)
T ss_pred hHHHHH
Confidence 655543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00047 Score=65.01 Aligned_cols=223 Identities=10% Similarity=0.076 Sum_probs=143.9
Q ss_pred cccchhhhhhhhcccCCCCccchhhcccCC-CCCC--cccccc-----ccccCCCCHHHHHHHHHHHHhCCCCCcHH-HH
Q 043311 23 TNTRVNATLQRSLSSSSDQPTKKYVNTKSK-LPPP--YDPFKK-----VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-KM 93 (257)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~--~~~~~~-----~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~l 93 (257)
....|-.++...+.-+....++....+..+ +.+. ..-.++ ..--.-|.-+...++|++.++.--.-... +|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 344556666666666666666666444322 2222 111111 22234456667777777777743222222 57
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhc
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY---TYAVLIKGLAAA 170 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---t~~~ll~~~~~~ 170 (257)
...|-+....++|-++|+.|.+. +.-...+|...+..+.+.++-++|..++.+-.+. -|-.. ...-....=.+.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhc
Confidence 77888888888888888888765 3345667888888888888878888888776653 23311 112222222343
Q ss_pred cCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhcCCch
Q 043311 171 ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE--KAVKEALIDKRGQGFR 248 (257)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~ 248 (257)
|| .+.+..+|+..... .+--.-.|+..|+.=.+.|+.+.+.++|++....++.|-. .-|..-+..-...|+.
T Consensus 1614 GD-----aeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1614 GD-----AERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred CC-----chhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 33 78888899888764 2335678999999999999999999999999999887753 4556666666667888
Q ss_pred hhHHhh
Q 043311 249 GVINIL 254 (257)
Q Consensus 249 ~~~~~l 254 (257)
+.+|.+
T Consensus 1688 ~~vE~V 1693 (1710)
T KOG1070|consen 1688 KNVEYV 1693 (1710)
T ss_pred hhHHHH
Confidence 777765
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.07 E-value=9.8e-05 Score=64.32 Aligned_cols=154 Identities=14% Similarity=0.135 Sum_probs=115.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC--------------------------------C-CCCHHHHHHHHHHHHhcCCh
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKG--------------------------------H-MPDVVAHTAVIEAYASAGQG 138 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g--------------------------------~-~p~~~~~~~li~~~~~~~~~ 138 (257)
.+-++|+..+++++|.++|+..++.. . +-.+.+|-++=.+|.-.++.
T Consensus 358 q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh 437 (638)
T KOG1126|consen 358 QLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDH 437 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHH
Confidence 36778999999999999999887542 1 13467788888889999999
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHHHcCCHH
Q 043311 139 KEALRVFMRMLASGVAP-NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF---EAFVRAQKVD 214 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~-~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li---~~~~~~~~~~ 214 (257)
+.|...|++-.+- .| ..++|+.+=.-+.. ...+|.|...|..- +..|..+||+.- -.|.+.++++
T Consensus 438 ~~Aik~f~RAiQl--dp~faYayTLlGhE~~~-----~ee~d~a~~~fr~A----l~~~~rhYnAwYGlG~vy~Kqek~e 506 (638)
T KOG1126|consen 438 DTAIKCFKRAIQL--DPRFAYAYTLLGHESIA-----TEEFDKAMKSFRKA----LGVDPRHYNAWYGLGTVYLKQEKLE 506 (638)
T ss_pred HHHHHHHHHhhcc--CCccchhhhhcCChhhh-----hHHHHhHHHHHHhh----hcCCchhhHHHHhhhhheeccchhh
Confidence 9999999888763 44 66777766555555 23388888888776 456788888764 4578889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 215 EARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 215 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.|+--|++..+-+ +-|.+....+-..+.+.|..++|..+|+|
T Consensus 507 ~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~ 548 (638)
T KOG1126|consen 507 FAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEK 548 (638)
T ss_pred HHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHH
Confidence 9999888877643 23566677777788888999998888864
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0038 Score=51.67 Aligned_cols=214 Identities=11% Similarity=0.080 Sum_probs=132.5
Q ss_pred cccCCCCccchhhccc--CCCCCCcccccc--ccccCCCCHHHHHHHHHHHHhCCCCCcHH---HHHHHHHhcCChHHHH
Q 043311 35 LSSSSDQPTKKYVNTK--SKLPPPYDPFKK--VVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEAL 107 (257)
Q Consensus 35 ~~~~~~~~~~~~~~~~--~~~~p~~~~~~~--~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~ll~~~~~~~~~~~a~ 107 (257)
+..+++..+.+...+. .+-.|. ..|.. .+.-+.||.+.+.+.+.+..+..-.++.. +.-+.....|+.+.|.
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 3345555555553332 222222 23333 66678889999999988888863333332 4566778889999988
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhccCCcchhHHH
Q 043311 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA-------YTYAVLIKGLAAAADGNAKILGD 180 (257)
Q Consensus 108 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~t~~~ll~~~~~~~~~~~~~~~~ 180 (257)
.-.++..+.+ .-++.......++|.+.|++.....++..|.+.|+--|+ .+|..+++-+...++ .+.
T Consensus 174 ~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~-----~~g 247 (400)
T COG3071 174 ENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG-----SEG 247 (400)
T ss_pred HHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc-----chH
Confidence 8888777653 236778899999999999999999999999999876554 677778876655333 222
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----------------------------
Q 043311 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD----------------------------- 231 (257)
Q Consensus 181 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------------------- 231 (257)
-...|+....+ .+-+...-.+++.-+.+.|+.++|.++..+-.+++..|+
T Consensus 248 L~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~ 326 (400)
T COG3071 248 LKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPE 326 (400)
T ss_pred HHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCC
Confidence 23333333321 222344444445555555555555555554444333322
Q ss_pred -HHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 232 -EKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 232 -~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+-.+.+|=.-|.+++.+++|...|+
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2455566666777777777777664
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0012 Score=51.95 Aligned_cols=162 Identities=16% Similarity=0.144 Sum_probs=90.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCH-HHHHHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGH-MPD-VVAHTAVIEAYASAGQGKEALRVFMRMLASGVA-PNA-YTYAVLIKGLA 168 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~~-~t~~~ll~~~~ 168 (257)
....+.+.|+++.|...|++..+... .|. ...+..+-.++...|++++|...|+++.+..-. +.. .++..+-..+.
T Consensus 39 ~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~ 118 (235)
T TIGR03302 39 EAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNY 118 (235)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHH
Confidence 44455666666666666666654311 111 134455556666666666666666666643211 111 12222222222
Q ss_pred hcc---CCcchhHHHHHHHHHHHHhCCCCCCHH-HH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 043311 169 AAA---DGNAKILGDAQKYLMEMVGKGMRPNAG-TY-----------------TAVFEAFVRAQKVDEARGLLQQMKAKG 227 (257)
Q Consensus 169 ~~~---~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~-----------------~~li~~~~~~~~~~~a~~~~~~m~~~g 227 (257)
... ..+.|..+.|.+.|+.+... .|+.. .+ -.+-..+.+.|++.+|...+++..+..
T Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 196 (235)
T TIGR03302 119 NQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENY 196 (235)
T ss_pred HhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Confidence 210 01124466666666666543 23221 11 134456778899999999999988762
Q ss_pred --CCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 228 --FVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 228 --~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
-......+..+..++...|+.+.+..+++
T Consensus 197 p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~ 227 (235)
T TIGR03302 197 PDTPATEEALARLVEAYLKLGLKDLAQDAAA 227 (235)
T ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 12245678888889999999998888764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0014 Score=55.35 Aligned_cols=184 Identities=13% Similarity=0.122 Sum_probs=144.9
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCcHH-H----------------------------------HHHHHHhcCChHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNNAV-K----------------------------------MFDALSKDGLTHEA 106 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~----------------------------------ll~~~~~~~~~~~a 106 (257)
.+.-...|++.|.++|+++.+... ..+.. + +-+-|+-.+..+.|
T Consensus 270 ~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKA 349 (559)
T KOG1155|consen 270 AASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKA 349 (559)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHH
Confidence 555678999999999999998632 21110 0 12223344566888
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHH
Q 043311 107 LQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185 (257)
Q Consensus 107 ~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~ 185 (257)
...|+...+- .|. ...|+.|=.=|..-++...|.+-++.-.+-+ +.|-+.|-.+=++|.- .+...-|+-.|
T Consensus 350 v~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYei-----m~Mh~YaLyYf 421 (559)
T KOG1155|consen 350 VMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEI-----MKMHFYALYYF 421 (559)
T ss_pred HHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHH-----hcchHHHHHHH
Confidence 8888887774 343 4577777777999999999999999888764 5588889889999988 55688888888
Q ss_pred HHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 186 MEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 186 ~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
++.... +| |...|.+|=++|.+.+++++|++.|.+....|- .+...+..+-..+.+-++.+.|.+.|+|
T Consensus 422 qkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 422 QKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred HHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 887763 44 788999999999999999999999999998873 4778999999999999999999988875
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0025 Score=50.06 Aligned_cols=145 Identities=17% Similarity=0.116 Sum_probs=113.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCC
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG 173 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~ 173 (257)
...|++.|++++|++...... +......=...+.+..+.+.|.+.+++|.+- -+..|.+-|.+++.+...+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence 446789999999999877622 3444444455567778899999999999864 2678888888888876553
Q ss_pred cchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhh
Q 043311 174 NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250 (257)
Q Consensus 174 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 250 (257)
.+.+.+|.-+|++|-+. ..|+.-+-|-...++...|++++|..++++..++.- -+..|...++......|....
T Consensus 186 -gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 186 -GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred -chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCChH
Confidence 34489999999999764 678999999999999999999999999999998753 367788888888877777643
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0045 Score=54.37 Aligned_cols=212 Identities=12% Similarity=0.109 Sum_probs=126.9
Q ss_pred cCCCCccchhhcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCCCcHH-H-HHHHHHh-----cCChHHH
Q 043311 37 SSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-K-MFDALSK-----DGLTHEA 106 (257)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~-ll~~~~~-----~~~~~~a 106 (257)
++....+-..+.+.....+|...+.- ..+.+.|+.++|..+|..+.+.+...... . +..+..- ....+..
T Consensus 17 ~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~ 96 (517)
T PF12569_consen 17 AGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKL 96 (517)
T ss_pred CCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHH
Confidence 44555555555555555555444433 66777888888888888887764322211 1 3333311 1245666
Q ss_pred HHHHHHHHhCCCC------------CC-------------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----
Q 043311 107 LQLFAQIKDKGHM------------PD-------------------VVAHTAVIEAYASAGQGKEALRVFMRMLAS---- 151 (257)
Q Consensus 107 ~~~~~~m~~~g~~------------p~-------------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---- 151 (257)
.++|+++.+.-.. ++ +.+|+.|-..|......+-..+++......
T Consensus 97 ~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~ 176 (517)
T PF12569_consen 97 LELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESN 176 (517)
T ss_pred HHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhccc
Confidence 7777776543100 00 223444444444444444444455444322
Q ss_pred C----------CCCCH--HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 043311 152 G----------VAPNA--YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN-AGTYTAVFEAFVRAQKVDEARG 218 (257)
Q Consensus 152 g----------~~~~~--~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~ 218 (257)
| -.|+. +++.-+-++|-..|+ .++|.++++...++ .|+ ...|.+--+.+-+.|++.+|.+
T Consensus 177 ~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~-----~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~ 249 (517)
T PF12569_consen 177 GSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGD-----YEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAE 249 (517)
T ss_pred CCCCCccccccCCchHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 1 12344 344556667777444 88899888877765 465 4567777788888899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 219 LLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 219 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
.++..+.... -|...=+.....+.+.|..+.|++++.
T Consensus 250 ~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 250 AMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred HHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9888887653 366777777778888898888887754
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0024 Score=52.27 Aligned_cols=180 Identities=15% Similarity=0.021 Sum_probs=103.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~ 139 (257)
..+.+.|+++.|...|.+..+..-. +.. ..+-..+...|+++.|.+.|+...+. .|+ ..+|..+-.++...|+++
T Consensus 72 ~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~ 149 (296)
T PRK11189 72 VLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYE 149 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHH
Confidence 5667888888888888888774321 121 13666778888888888888888763 343 567777777788888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 219 (257)
+|.+.|+...+. .|+..........+.. .+..++|...|...... ..|+...+ .+.. ...|+++.+ +.
T Consensus 150 eA~~~~~~al~~--~P~~~~~~~~~~l~~~-----~~~~~~A~~~l~~~~~~-~~~~~~~~-~~~~--~~lg~~~~~-~~ 217 (296)
T PRK11189 150 LAQDDLLAFYQD--DPNDPYRALWLYLAES-----KLDPKQAKENLKQRYEK-LDKEQWGW-NIVE--FYLGKISEE-TL 217 (296)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHc-----cCCHHHHHHHHHHHHhh-CCccccHH-HHHH--HHccCCCHH-HH
Confidence 888888887764 3332211111111222 23377777777554322 12222111 1222 223444333 23
Q ss_pred HHHHHHC---CC--CC-CHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 220 LQQMKAK---GF--VP-DEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 220 ~~~m~~~---g~--~p-~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+..+... .+ .| ....|..+-..+...|+.+.|...|+
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~ 260 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFK 260 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4444321 11 01 22456666667777777777777665
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0003 Score=56.75 Aligned_cols=155 Identities=14% Similarity=0.078 Sum_probs=83.9
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEA 141 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 141 (257)
..+.+.|.+++|.+.++.-.+..-.|+.. -|-++|.+...++.|+.+|.+-.+. ++-|+....-+-+.+-..++.++|
T Consensus 231 kCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~~a 309 (478)
T KOG1129|consen 231 KCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQEDA 309 (478)
T ss_pred HHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHHHH
Confidence 34557777777777777666655555544 3556777777777777777766553 222332223344445555556666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043311 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221 (257)
Q Consensus 142 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 221 (257)
.++|+...+.. ..++.....+-.+|.- .++.|.|+.++..+.+.|+. +...|+.+--+|.-.+++|.++-.|+
T Consensus 310 ~~lYk~vlk~~-~~nvEaiAcia~~yfY-----~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 310 LQLYKLVLKLH-PINVEAIACIAVGYFY-----DNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHhcC-Cccceeeeeeeecccc-----CCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 66665555431 2233333333333333 33456666666666555543 44455544444555555555555555
Q ss_pred HHHH
Q 043311 222 QMKA 225 (257)
Q Consensus 222 ~m~~ 225 (257)
+...
T Consensus 383 RAls 386 (478)
T KOG1129|consen 383 RALS 386 (478)
T ss_pred HHHh
Confidence 5543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0021 Score=55.95 Aligned_cols=189 Identities=17% Similarity=0.106 Sum_probs=137.3
Q ss_pred ccccCCCCHHHHHHHHHHHHhC-----CC-CCcHH----HHHHHHHhcCChHHHHHHHHHHHh---C--CC-CCCHH-HH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE-----GL-TNNAV----KMFDALSKDGLTHEALQLFAQIKD---K--GH-MPDVV-AH 125 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~-----~~-~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~---~--g~-~p~~~-~~ 125 (257)
..+...+++.+|..+|+++... |- .|... .|-.+|.+.|++++|...++...+ + |. .|.+. .+
T Consensus 249 ~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 249 LVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 6778999999999999999862 21 22222 255579999999998887765532 1 22 23333 46
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh----CC--
Q 043311 126 TAVIEAYASAGQGKEALRVFMRMLAS---GVAP----NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG----KG-- 192 (257)
Q Consensus 126 ~~li~~~~~~~~~~~a~~~~~~m~~~---g~~~----~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g-- 192 (257)
+.+...|...+++++|..+++.-.+. -..+ -..+|+.+-..|-. .|++++|.+++..... .+
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-----~gk~~ea~~~~k~ai~~~~~~~~~ 403 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-----MGKYKEAEELYKKAIQILRELLGK 403 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-----hcchhHHHHHHHHHHHHHHhcccC
Confidence 67777888899999999999775532 1222 24789999999999 6669999999887653 22
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCC--CCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 193 MRPN-AGTYTAVFEAFVRAQKVDEARGLLQQMKA----KGF--VPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 193 ~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~--~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
..+. ...++-|-..|.+.+...+|.++|.+-.. .|. +-...+|..|...|.+.|..+.|+++-+
T Consensus 404 ~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 404 KDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred cChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 2222 45678888999999999999999887653 232 2235788999999999999999998865
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0013 Score=55.66 Aligned_cols=121 Identities=16% Similarity=0.214 Sum_probs=98.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~ 171 (257)
+|+..+...++++.|.++|+++.+.. |+ ..-.+.+.+...++-.+|.+++++..+. .+-|......-.+.|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 47888888999999999999999874 55 4455788888888999999999998865 3446677777777788844
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043311 172 DGNAKILGDAQKYLMEMVGKGMRPNA-GTYTAVFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~ 224 (257)
+.+.|.++.++..+. .|+. .+|..|..+|.+.|+++.|+..+.-+-
T Consensus 249 -----~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 -----KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred -----CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 489999999999874 5655 599999999999999999998888764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0013 Score=56.61 Aligned_cols=200 Identities=15% Similarity=0.085 Sum_probs=140.0
Q ss_pred cccCCCCccchhhcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHh--CCC-CCcHHHHHHHHHhcCChHHHHH
Q 043311 35 LSSSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRT--EGL-TNNAVKMFDALSKDGLTHEALQ 108 (257)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~--~~~-~p~~~~ll~~~~~~~~~~~a~~ 108 (257)
...+..+++++++.+...+.|....-=+ ..++-.|.-+.|...|....+ .|. .|.. =+---|.+.++...|.+
T Consensus 323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L-Ylgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL-YLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH-HHHHHHHHhccHHHHHH
Confidence 3345566666666666666655333222 555666666666666665554 232 2322 14445677889999999
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHhccCCcchhHHHH
Q 043311 109 LFAQIKDKGHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLAS--GVA----PNAYTYAVLIKGLAAAADGNAKILGDA 181 (257)
Q Consensus 109 ~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~----~~~~t~~~ll~~~~~~~~~~~~~~~~a 181 (257)
.|.+... +-| |+...+-+=-.....+.+.+|..+|+.-... .+- .-.-+++.+=.+|.+ .+..++|
T Consensus 402 Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk-----l~~~~eA 474 (611)
T KOG1173|consen 402 FFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK-----LNKYEEA 474 (611)
T ss_pred HHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH-----HhhHHHH
Confidence 9988665 444 6677777777777788899999999887622 111 133456777777888 6669999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 043311 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245 (257)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 245 (257)
...++.-... .+-+..+|.++--.|...|+++.|.+.|.+.. ++.||..+...++..+...
T Consensus 475 I~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 475 IDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHh
Confidence 9999987754 24488899999999999999999999999865 5789998999888866543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00027 Score=57.54 Aligned_cols=151 Identities=14% Similarity=0.097 Sum_probs=107.0
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCh
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVA---HTAVIEAYASAGQG 138 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~~~~ 138 (257)
.++...|+++.|++++..- -..... -.+..|.+.++++.|.+.++.|.+.. .|... ..+.+..+.-...+
T Consensus 110 ~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhCchhH
Confidence 6778899999999888643 112222 36789999999999999999999853 34332 33334433334479
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHH
Q 043311 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV-DEAR 217 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~-~~a~ 217 (257)
++|+.+|+++.+. ..++..+.+.+..+... .|++++|.+++++..+.+ +-+..+.-.+|-.....|+. +.+.
T Consensus 184 ~~A~y~f~El~~~-~~~t~~~lng~A~~~l~-----~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 184 QDAFYIFEELSDK-FGSTPKLLNGLAVCHLQ-----LGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp CHHHHHHHHHHCC-S--SHHHHHHHHHHHHH-----CT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHhc-cCCCHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHH
Confidence 9999999998765 56788899988888888 455999999999976543 22455666677777777877 7788
Q ss_pred HHHHHHHHC
Q 043311 218 GLLQQMKAK 226 (257)
Q Consensus 218 ~~~~~m~~~ 226 (257)
+++.++...
T Consensus 257 ~~l~qL~~~ 265 (290)
T PF04733_consen 257 RYLSQLKQS 265 (290)
T ss_dssp HHHHHCHHH
T ss_pred HHHHHHHHh
Confidence 899888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.007 Score=43.89 Aligned_cols=95 Identities=12% Similarity=-0.094 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043311 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204 (257)
Q Consensus 125 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 204 (257)
+..+-..+...|++++|...|+...... +.+...|..+-..+.. .|++++|...|+...... +.+...+..+-
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~-----~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg 99 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMM-----LKEYTTAINFYGHALMLD-ASHPEPVYQTG 99 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence 4445566677777777777777776653 3366677777777777 444777777777776532 23556666677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC
Q 043311 205 EAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
.++...|++++|...|++....
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777778877777777663
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0054 Score=48.24 Aligned_cols=157 Identities=15% Similarity=0.100 Sum_probs=110.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCcH----HHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHhc
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNNA----VKMFDALSKDGLTHEALQLFAQIKDKGH-MPDV-VAHTAVIEAYASA 135 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~~----~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~-~~~~~li~~~~~~ 135 (257)
..+...|+++.|...|++.....- .|.. ..+-.++.+.|+++.|...|+.+.+... .|.. .++..+-.++...
T Consensus 41 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~ 120 (235)
T TIGR03302 41 KEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQ 120 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHh
Confidence 677789999999999999887432 2221 2467788999999999999999987532 1221 1344444444443
Q ss_pred --------CChHHHHHHHHHHHHCCCCCC-HHHHH-----------------HHHHHHHhccCCcchhHHHHHHHHHHHH
Q 043311 136 --------GQGKEALRVFMRMLASGVAPN-AYTYA-----------------VLIKGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 136 --------~~~~~a~~~~~~m~~~g~~~~-~~t~~-----------------~ll~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
|+.++|.+.|+...+. .|+ ...+. .+-..+.+ .|+++.|...++...
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~-----~g~~~~A~~~~~~al 193 (235)
T TIGR03302 121 IDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLK-----RGAYVAAINRFETVV 193 (235)
T ss_pred cccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCChHHHHHHHHHHH
Confidence 6789999999999875 333 22221 22233455 455999999999987
Q ss_pred hCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 190 GKG--MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 190 ~~g--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
+.. -+.....+..+..++.+.|+.++|..+++.+..+
T Consensus 194 ~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 194 ENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 541 1223467889999999999999999999998765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00037 Score=55.16 Aligned_cols=105 Identities=17% Similarity=0.194 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCC
Q 043311 119 MPDVVAHTAVIEAYASA-----GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193 (257)
Q Consensus 119 ~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~ 193 (257)
+-|-.+|-.++..|... +.++-...-++.|.+.|+..|..+|+.||+.+-+ +. +
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK-----gk----------------f 122 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK-----GK----------------F 122 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc-----cc----------------c
Confidence 45677777777777654 5677777788888888888888888888887665 21 0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCc
Q 043311 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247 (257)
Q Consensus 194 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 247 (257)
.....|....-.|-+. -..+.+++++|...|+.||..+-..|+.++.+.|.
T Consensus 123 -iP~nvfQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 123 -IPQNVFQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred -ccHHHHHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1112222222222222 24566777777777777777777777777776665
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.01 Score=54.18 Aligned_cols=137 Identities=13% Similarity=0.105 Sum_probs=93.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDV-VAHTAVIEAYASAGQGKEALRVFMRMLASGVAP-NAYTYAVLIKGLAAA 170 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~t~~~ll~~~~~~ 170 (257)
|-....+.|..++|..+++...+. .||. ...-.+..++.+.+++++|+..+++..+. .| +......+-.++..
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~- 166 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDE- 166 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHH-
Confidence 445556778888888888888773 5654 46677777888888888888888888775 34 44445555555666
Q ss_pred cCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043311 171 ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240 (257)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 240 (257)
.|.+++|..+|++....+ +-+..++..+-..+-..|+.++|...|+...+.- .|-...|+..+.
T Consensus 167 ----~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~ 230 (694)
T PRK15179 167 ----IGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV 230 (694)
T ss_pred ----hcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH
Confidence 444888888888887632 2235667777777778888888888888887652 234455555543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0016 Score=52.80 Aligned_cols=141 Identities=12% Similarity=0.173 Sum_probs=104.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKG-HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA 170 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~ 170 (257)
.+++.+-+.+..+.|..+|.+..+.+ ...++....++|. |...++.+.|..+|+...+. ...+...|...+..+.+.
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHh
Confidence 57788888888999999999998753 3456666666665 33456677899999998876 566788899999999996
Q ss_pred cCCcchhHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 043311 171 ADGNAKILGDAQKYLMEMVGKGMRPNA---GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242 (257)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 242 (257)
++ .+.+..+|+..... +.++. ..|...|+-=.+.|+++.+.++.+++.+. .|+...+..++.-|
T Consensus 84 ~d-----~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 84 ND-----INNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp T------HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred Cc-----HHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 66 99999999998765 33332 48999999999999999999999999874 45555555555443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0087 Score=46.16 Aligned_cols=183 Identities=15% Similarity=0.047 Sum_probs=131.6
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~ 139 (257)
..|.+.|++..|..-+++..+..- .+... .+-..|-+.|..+.|.+-|+...+. .|+ -.+.|..=.-+|..|+++
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg~~~ 120 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQGRPE 120 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCCChH
Confidence 567788999999988888887532 22222 2455667888899999888887763 343 456666666678888999
Q ss_pred HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043311 140 EALRVFMRMLASG-VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218 (257)
Q Consensus 140 ~a~~~~~~m~~~g-~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 218 (257)
+|...|++-...- ..--..||..+--...+ .|..+.|...|+.-.+.. +-...+.-.+.+...+.|+...|..
T Consensus 121 eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~-----~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 121 EAMQQFERALADPAYGEPSDTLENLGLCALK-----AGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred HHHHHHHHHHhCCCCCCcchhhhhhHHHHhh-----cCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 9999998877542 22233566666555556 555889999888877642 1133566777788888899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhh
Q 043311 219 LLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINIL 254 (257)
Q Consensus 219 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l 254 (257)
++++....|. ++..+.---|+-..+.|+...+.++
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence 9988887765 8888888888888888888777654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.014 Score=45.13 Aligned_cols=196 Identities=16% Similarity=0.075 Sum_probs=127.1
Q ss_pred hhhhcccCCCCccchhhcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHH----HHHhcCCh
Q 043311 31 LQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFD----ALSKDGLT 103 (257)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~----~~~~~~~~ 103 (257)
....+..++...+..-+++.....|+...-.. ..|.+.|+.+.|.+-|+...+. .|+...+++ .+|..|.+
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCCCh
Confidence 33455666666666666666666666433333 6777888888888888877763 333333333 44777888
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHH
Q 043311 104 HEALQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQ 182 (257)
Q Consensus 104 ~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~ 182 (257)
++|...|+...+...-+. ..+|..+--+..+.|+.+.|...|++-.+.. +-...+.-.+.+...+ .|....|.
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~-----~~~y~~Ar 193 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYK-----AGDYAPAR 193 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHh-----cccchHHH
Confidence 888888887777643332 3567777777778888888888888777653 2233455556666666 34477888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 043311 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKE 237 (257)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 237 (257)
.+++.....+. ++..+.-..|+.--+.|+-+.+.++=..+.+. -|.+.-|-.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~ 245 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQT 245 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHh
Confidence 77777766554 77777777777777788877777776666543 455444433
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0061 Score=57.96 Aligned_cols=184 Identities=10% Similarity=0.096 Sum_probs=141.6
Q ss_pred ccccCCCCHHHHHHHHHHHHhC-CCCCc------HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE-GLTNN------AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~-~~~p~------~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 135 (257)
....+.++.+.|.++.++.+.. +.... +.++++.-...|.-+...++|++..+.. -.-.+|..|...|.+.
T Consensus 1466 af~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ 1543 (1710)
T KOG1070|consen 1466 AFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKS 1543 (1710)
T ss_pred HHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHh
Confidence 4556889999999999988863 23222 2246666677788888999999999863 2345789999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCC
Q 043311 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA---GTYTAVFEAFVRAQK 212 (257)
Q Consensus 136 ~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~~~ 212 (257)
...++|-++|+.|.++ ..-....|.-....+.+..+ -+.|.++++...+. -|.. ....-.+..-.+.|+
T Consensus 1544 ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne-----~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1544 EKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNE-----AEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred hcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccH-----HHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCC
Confidence 9999999999999976 23466788888998888444 78899998887653 3443 334445555678899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 213 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.+.+..+|+.....- +--...|+..|+.-.++|+...+..+|++
T Consensus 1616 aeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeR 1659 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFER 1659 (1710)
T ss_pred chhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999999999998763 22345899999999999999999999974
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.016 Score=50.98 Aligned_cols=175 Identities=16% Similarity=0.152 Sum_probs=124.7
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhC----C----------CCCCHHHH--HHHHHHHHhcC
Q 043311 73 NLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDK----G----------HMPDVVAH--TAVIEAYASAG 136 (257)
Q Consensus 73 ~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g----------~~p~~~~~--~~li~~~~~~~ 136 (257)
.+...+..+...|+++-...|-..|.......-..+++...... + -.|+...| .-+-..|-..|
T Consensus 129 ~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g 208 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG 208 (517)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC
Confidence 35555677777886555555666666555555556666655432 1 13445444 55566688899
Q ss_pred ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 043311 137 QGKEALRVFMRMLASGVAPN-AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215 (257)
Q Consensus 137 ~~~~a~~~~~~m~~~g~~~~-~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 215 (257)
++++|++++++-.++ .|+ +..|..--+.+-+.|+ +.+|.+.++....... -|...=+-....+.++|+.++
T Consensus 209 ~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~-----~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~ 280 (517)
T PF12569_consen 209 DYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGD-----LKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEE 280 (517)
T ss_pred CHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHH
Confidence 999999999998886 444 7888888888889555 9999999999887543 267777778888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHH--------HHHHHHhhcCCchhhHHhhh
Q 043311 216 ARGLLQQMKAKGFVPDEKAV--------KEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 216 a~~~~~~m~~~g~~p~~~t~--------~~ll~~~~~~g~~~~~~~l~ 255 (257)
|.+++....+.+..|-...+ ...-.+|.+.|+.+.|.+-|
T Consensus 281 A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~ 328 (517)
T PF12569_consen 281 AEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRF 328 (517)
T ss_pred HHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999988764433222 23334688899988887765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0026 Score=55.44 Aligned_cols=189 Identities=17% Similarity=0.136 Sum_probs=133.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhC-----CC-CCcHHH----HHHHHHhcCChHHHHHHHHHHHhC-----C-CCCCH-HHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE-----GL-TNNAVK----MFDALSKDGLTHEALQLFAQIKDK-----G-HMPDV-VAH 125 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~-----~~-~p~~~~----ll~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~~-~~~ 125 (257)
..|...|+++.|..++++..+. |. -|...+ +-..|...+++.+|..+|+++..- | ..|.+ .++
T Consensus 207 ~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l 286 (508)
T KOG1840|consen 207 EMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATL 286 (508)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8899999999999999988764 32 233223 445778899999999999988642 1 22333 467
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH---C--C-CCCCHH-HHHHHHHHHHhccCCcchhHHHHHHHHHHHHh---CCCCC
Q 043311 126 TAVIEAYASAGQGKEALRVFMRMLA---S--G-VAPNAY-TYAVLIKGLAAAADGNAKILGDAQKYLMEMVG---KGMRP 195 (257)
Q Consensus 126 ~~li~~~~~~~~~~~a~~~~~~m~~---~--g-~~~~~~-t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~---~g~~p 195 (257)
+.|=.+|.+.|++++|...+++-.+ + | ..|... -++.+...|+. .+.++.|..+++...+ .-+.+
T Consensus 287 ~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~-----~~~~Eea~~l~q~al~i~~~~~g~ 361 (508)
T KOG1840|consen 287 NNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQS-----MNEYEEAKKLLQKALKIYLDAPGE 361 (508)
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH-----hcchhHHHHHHHHHHHHHHhhccc
Confidence 7777789999999888887766432 1 2 223333 33444555556 4458899888886542 11223
Q ss_pred CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 196 NA----GTYTAVFEAFVRAQKVDEARGLLQQMKAK-----G-FVP-DEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 196 ~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p-~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+. .+|+.|-..|...|++++|.++|+..... | ..+ ....++.+-.+|.+.+..+.+.++|+
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 32 57999999999999999999999988642 1 122 35677788888999999999999885
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.024 Score=47.50 Aligned_cols=154 Identities=9% Similarity=0.042 Sum_probs=104.9
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHH---HHHh----cCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFD---ALSK----DGLTHEALQLFAQIKDKGHMPDV-VAHTAVIEAYAS 134 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~---~~~~----~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~ 134 (257)
..+...|+++++.++++...+. .|+....+. .+.. .+..+.+.+.+.. ..+..|+. .....+-..+..
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHH
Confidence 5667889999999999988875 343322221 2222 3444555555544 22223333 344455567888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHHcC
Q 043311 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM-RPNA--GTYTAVFEAFVRAQ 211 (257)
Q Consensus 135 ~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~--~~~~~li~~~~~~~ 211 (257)
.|++++|...+++..+.. +.+...+..+-..+.. .|++++|..+++......- .|+. ..|-.+...+...|
T Consensus 127 ~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~-----~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G 200 (355)
T cd05804 127 AGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM-----QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG 200 (355)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH-----cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC
Confidence 999999999999998864 4456777888888888 4449999999998775321 2333 34556778899999
Q ss_pred CHHHHHHHHHHHHHC
Q 043311 212 KVDEARGLLQQMKAK 226 (257)
Q Consensus 212 ~~~~a~~~~~~m~~~ 226 (257)
++++|..++++....
T Consensus 201 ~~~~A~~~~~~~~~~ 215 (355)
T cd05804 201 DYEAALAIYDTHIAP 215 (355)
T ss_pred CHHHHHHHHHHHhcc
Confidence 999999999998643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.019 Score=45.10 Aligned_cols=153 Identities=13% Similarity=0.054 Sum_probs=110.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
+-..+...|+-+....+....... ..-|....+..+....+.|++.+|...|++...- -++|..+|+.+=-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccC
Confidence 444555666666666665553332 2345556667888888888888888888888765 36788888888888888554
Q ss_pred CcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhH
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~ 251 (257)
++.|..-|.+..+- .| +...+|.|--.+.-.|++..|..++.+....+- -|...-..+..+....|+.+.|
T Consensus 150 -----~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 150 -----FDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred -----hhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHH
Confidence 88888877776653 33 445677777778888888888888888877653 3566777777788888888888
Q ss_pred Hhhh
Q 043311 252 NILF 255 (257)
Q Consensus 252 ~~l~ 255 (257)
+.+-
T Consensus 222 ~~i~ 225 (257)
T COG5010 222 EDIA 225 (257)
T ss_pred Hhhc
Confidence 7764
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0071 Score=43.03 Aligned_cols=105 Identities=14% Similarity=0.049 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHH
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTA 202 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 202 (257)
.....+-..+...|++++|.+.|+.....+ +.+...|..+-..+.. .|+++.|..+++.....+ +.+...+..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~-----~~~~~~A~~~~~~~~~~~-p~~~~~~~~ 90 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQM-----LKEYEEAIDAYALAAALD-PDDPRPYFH 90 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcC-CCChHHHHH
Confidence 344555556666777777777777766543 3355666666666666 344777777777665442 224455555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043311 203 VFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236 (257)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 236 (257)
+-..+...|+++.|...|++..+. .|+...+.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 556667777777777777776654 34544443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.011 Score=45.30 Aligned_cols=162 Identities=12% Similarity=0.076 Sum_probs=106.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEAL 142 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 142 (257)
..|...|+++.+....+.+... . ..+...++.+++...+....+. -+.|...|..+-..|...|++++|.
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~~-~--------~~~~~~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLADP-L--------HQFASQQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhCc-c--------ccccCchhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 5566777777765444222211 1 1112355556666666665553 2356778999989999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH-HhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043311 143 RVFMRMLASGVAPNAYTYAVLIKGL-AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221 (257)
Q Consensus 143 ~~~~~m~~~g~~~~~~t~~~ll~~~-~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 221 (257)
..|++..+.. +-|...+..+-.++ ...|+ ...++|.+++++..+.+ +-+...+..+-..+...|++++|...|+
T Consensus 94 ~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~---~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 94 LAYRQALQLR-GENAELYAALATVLYYQAGQ---HMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999888763 33667777766654 44222 11488999999888753 2255677777788889999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHH
Q 043311 222 QMKAKGFVPDEKAVKEALID 241 (257)
Q Consensus 222 ~m~~~g~~p~~~t~~~ll~~ 241 (257)
++.+.. .|+..-+ .+|.+
T Consensus 169 ~aL~l~-~~~~~r~-~~i~~ 186 (198)
T PRK10370 169 KVLDLN-SPRVNRT-QLVES 186 (198)
T ss_pred HHHhhC-CCCccHH-HHHHH
Confidence 998763 4554443 33344
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0054 Score=48.27 Aligned_cols=149 Identities=12% Similarity=0.064 Sum_probs=103.7
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHH-HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcCC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK-MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA----VIEAYASAGQ 137 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~----li~~~~~~~~ 137 (257)
..|.+.|++++|.+..... ..-.... =...+.+..+++.|.+..+.|.+. -+..|.+- .|....-.+.
T Consensus 116 ~i~~~~~~~deAl~~~~~~----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLG----ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred HHhhcCCChHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchh
Confidence 7889999999999887762 1222221 245567888899999999999985 34455554 4444444567
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHH
Q 043311 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ-KVDEA 216 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~-~~~~a 216 (257)
+..|+-+|++|.++ ..|+..+.+-....+.. .|++++|..++++.....-. +..|.-.+|-.....| +.+..
T Consensus 189 ~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~-----~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQ-----LGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred hhhHHHHHHHHhcc-cCCChHHHccHHHHHHH-----hcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHH
Confidence 99999999999875 68899999998888888 45599999999998876433 3444444444333444 44555
Q ss_pred HHHHHHHHH
Q 043311 217 RGLLQQMKA 225 (257)
Q Consensus 217 ~~~~~~m~~ 225 (257)
.+.+..+..
T Consensus 262 ~r~l~QLk~ 270 (299)
T KOG3081|consen 262 ERNLSQLKL 270 (299)
T ss_pred HHHHHHHHh
Confidence 566666554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00094 Score=54.19 Aligned_cols=126 Identities=14% Similarity=0.151 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHH
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASG-VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 200 (257)
+.+|-.+|+..-+.+.++.|..+|.+.++.+ +...++...+.|..++. +..+.|.++|+...+. +.-+...|
T Consensus 1 t~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~------~d~~~A~~Ife~glk~-f~~~~~~~ 73 (280)
T PF05843_consen 1 TLVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCN------KDPKRARKIFERGLKK-FPSDPDFW 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTC------S-HHHHHHHHHHHHHH-HTT-HHHH
T ss_pred CHHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC------CCHHHHHHHHHHHHHH-CCCCHHHH
Confidence 3578899999999999999999999998653 45566666666664432 2267799999988764 56678889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhcCCchhhHHhhhc
Q 043311 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE----KAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
..-++-+.+.|+.+.|..+|++.... .|.. ..|...+.-=.+.|+.+.+.++..
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~ 131 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEK 131 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999866 3343 489999999999999988888764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.008 Score=50.36 Aligned_cols=181 Identities=13% Similarity=-0.003 Sum_probs=113.7
Q ss_pred cCCCCHHHHHHHHHHHHhCC-CCCcHH--HHH--HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 043311 66 EEPTDPRNLQEIFHKMRTEG-LTNNAV--KMF--DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS----AG 136 (257)
Q Consensus 66 ~~~~~~~~a~~~~~~m~~~~-~~p~~~--~ll--~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~ 136 (257)
...|+++.+.+.+....+.. ..++.. ..+ ..+...|++++|.++++...+.. +.|...+.. ...+.. .+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~ 94 (355)
T cd05804 17 LLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSG 94 (355)
T ss_pred HhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhccccc
Confidence 34456666555555554422 122322 222 34567899999999999887752 223344442 223333 34
Q ss_pred ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 043311 137 QGKEALRVFMRMLASGVAPNA-YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215 (257)
Q Consensus 137 ~~~~a~~~~~~m~~~g~~~~~-~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 215 (257)
....+.+.+.. .....|+. .....+-..+.. .|++++|...++...+.. +.+...+..+-..+...|++++
T Consensus 95 ~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~-----~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 95 MRDHVARVLPL--WAPENPDYWYLLGMLAFGLEE-----AGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred CchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHH
Confidence 45555555544 12233333 344455556667 455999999999988752 3345667788888999999999
Q ss_pred HHHHHHHHHHCCC-CCCH--HHHHHHHHHhhcCCchhhHHhhhc
Q 043311 216 ARGLLQQMKAKGF-VPDE--KAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 216 a~~~~~~m~~~g~-~p~~--~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
|..++++.....- .|+. ..+..+...+...|+.+.|..+|+
T Consensus 167 A~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 210 (355)
T cd05804 167 GIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYD 210 (355)
T ss_pred HHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999887532 2333 234467778999999999998876
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.026 Score=44.27 Aligned_cols=168 Identities=16% Similarity=0.137 Sum_probs=107.5
Q ss_pred CCCHHHHHHHHHHHHh---CC-CCCcHHH----HHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcC
Q 043311 68 PTDPRNLQEIFHKMRT---EG-LTNNAVK----MFDALSKDGLTHEALQLFAQIKDKGHMPDV---VAHTAVIEAYASAG 136 (257)
Q Consensus 68 ~~~~~~a~~~~~~m~~---~~-~~p~~~~----ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~~ 136 (257)
..+.+++.+++.++.. .| ..++..+ ++.+..-.|+.+.|..+++.+...- |.. .-..+|+ +-..|
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~--lEa~~ 100 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAML--LEATG 100 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHH--HHHhh
Confidence 4577888888888875 45 5666664 5556667888888999998887752 332 2222221 34568
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 043311 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216 (257)
Q Consensus 137 ~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 216 (257)
++++|.++++.+.+.+ +.|..+|--=+-..-.. |.--+|.+-+.+..+. +.-|...|--+-+.|...|++.+|
T Consensus 101 ~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~-----GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 101 NYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ-----GKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKA 173 (289)
T ss_pred chhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc-----CCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHH
Confidence 8899999999988776 55666665333333221 1133444444444432 566889999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhcCCc
Q 043311 217 RGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247 (257)
Q Consensus 217 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 247 (257)
.-+++++.-.. +.+..-|..+-..+.-.|.
T Consensus 174 ~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 174 AFCLEELLLIQ-PFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHHHHHcC-CCcHHHHHHHHHHHHHHhh
Confidence 99999987642 2244444444444433333
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0077 Score=51.36 Aligned_cols=185 Identities=13% Similarity=0.039 Sum_probs=124.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~ 139 (257)
.+|....+.++..+.|+...+.+- .|+.. +=-..+.-.+++++|..=|+.-..- .| ++..|--+-.+.-+.+.++
T Consensus 368 ~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~ 445 (606)
T KOG0547|consen 368 AAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALYRQHKIA 445 (606)
T ss_pred HHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHH
Confidence 778888888888888888887443 34432 2222223345667777777766653 33 3344555555556677889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC-----CC--CCCHHHHHHHHHHHHHcCC
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK-----GM--RPNAGTYTAVFEAFVRAQK 212 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~-----g~--~p~~~~~~~li~~~~~~~~ 212 (257)
+++..|++.++. .+--..+|+..-..+.. .++++.|.+.|+...+. ++ .+....--+++..-.+ ++
T Consensus 446 ~~m~~Fee~kkk-FP~~~Evy~~fAeiLtD-----qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d 518 (606)
T KOG0547|consen 446 ESMKTFEEAKKK-FPNCPEVYNLFAEILTD-----QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-ED 518 (606)
T ss_pred HHHHHHHHHHHh-CCCCchHHHHHHHHHhh-----HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hh
Confidence 999999988876 56677888888888888 55599999988876542 11 1112222333333344 78
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 213 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
+..|..+++...+..-+ ....|..|-..-...|+.++|..+|+|
T Consensus 519 ~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred HHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 88899998888775433 346788888888889999999999875
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0074 Score=38.90 Aligned_cols=94 Identities=19% Similarity=0.136 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043311 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204 (257)
Q Consensus 125 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 204 (257)
|..+...+...|++++|..+|++..+.. +.+...+..+...+.. .+.++.|.+.|+...... +.+..++..+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 75 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYK-----LGKYEEALEDYEKALELD-PDNAKAYYNLG 75 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhCC-CcchhHHHHHH
Confidence 3444555566666666666666665542 2233455555555555 333666666666655432 22334555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 043311 205 EAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~m~~ 225 (257)
..+...|+.+.|...+.+..+
T Consensus 76 ~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 76 LAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHhHHHHHHHHHHHHc
Confidence 666666777777766666543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.046 Score=46.50 Aligned_cols=197 Identities=13% Similarity=0.042 Sum_probs=147.2
Q ss_pred cCCCCCCccccccccccCCCCHHHHHHHHHHHHhCCCCCc-HHHHH-HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 043311 50 KSKLPPPYDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNN-AVKMF-DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127 (257)
Q Consensus 50 ~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~ll-~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 127 (257)
-....|........-++-.++.+.|...|++..+.+-.-. .+||| --|...++...|.+-|+...+-. +.|-..|-.
T Consensus 325 idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYG 403 (559)
T KOG1155|consen 325 IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYG 403 (559)
T ss_pred hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhh
Confidence 3455666555555677778899999999999998653332 33544 46888899999999999887731 347789999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043311 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207 (257)
Q Consensus 128 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 207 (257)
|=++|.-.+...=|+-.|++-.+- .+-|.+.|.+|=+.|.+ -++.++|.+.|......|-. +...|..|-+.|
T Consensus 404 LGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~k-----l~~~~eAiKCykrai~~~dt-e~~~l~~LakLy 476 (559)
T KOG1155|consen 404 LGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEK-----LNRLEEAIKCYKRAILLGDT-EGSALVRLAKLY 476 (559)
T ss_pred hhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHH-----hccHHHHHHHHHHHHhcccc-chHHHHHHHHHH
Confidence 999999999999999999998875 35588999999999999 44499999999988765422 557889999999
Q ss_pred HHcCCHHHHHHHHHHHHH----CCCCCCHHHHHH--HHHHhhcCCchhhHHhh
Q 043311 208 VRAQKVDEARGLLQQMKA----KGFVPDEKAVKE--ALIDKRGQGFRGVINIL 254 (257)
Q Consensus 208 ~~~~~~~~a~~~~~~m~~----~g~~p~~~t~~~--ll~~~~~~g~~~~~~~l 254 (257)
-+.++..+|...|+.-.+ .|..-+...... |-.-+.+.++++.|..+
T Consensus 477 e~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Y 529 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYY 529 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 999999999888776654 354433222222 33346777888777654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.019 Score=48.99 Aligned_cols=148 Identities=14% Similarity=0.127 Sum_probs=66.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCC--CcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHH
Q 043311 67 EPTDPRNLQEIFHKMRTEGLT--NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDV-VAHTAVIEAYASAGQGKEALR 143 (257)
Q Consensus 67 ~~~~~~~a~~~~~~m~~~~~~--p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~ 143 (257)
+.++++.|.++|+........ |-+...+.+=.+...++.|..+|+....- -|-+ ..|---+.+=-..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHH
Confidence 455666666666666653321 11112333334444555555555544331 2222 233333444444445555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043311 144 VFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223 (257)
Q Consensus 144 ~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 223 (257)
+|+.-.+ -.|+...|++.|+-=.+ -..++.|.++++...- +.|+..+|--...-=-++|....+..+|++.
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElR-----ykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELR-----YKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHH-----hhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 5544332 34555555555544444 2224455555544442 1244444444444444444444444444444
Q ss_pred HH
Q 043311 224 KA 225 (257)
Q Consensus 224 ~~ 225 (257)
.+
T Consensus 234 ie 235 (677)
T KOG1915|consen 234 IE 235 (677)
T ss_pred HH
Confidence 43
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0077 Score=52.92 Aligned_cols=216 Identities=12% Similarity=-0.039 Sum_probs=107.9
Q ss_pred cchhhhhhhhcccCCCCccchhhcccCCCCCCccccccccccCCCCHHHHHHHHHHHHhCCCCCc-HHHHH-HHHHhcCC
Q 043311 25 TRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNN-AVKMF-DALSKDGL 102 (257)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~ll-~~~~~~~~ 102 (257)
..|++.+...-..-...-+.+-+.+..+..|..=......+.-.++.+.|++.|++..+.+-.-. +.||+ --+.....
T Consensus 391 eiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee 470 (638)
T KOG1126|consen 391 EIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEE 470 (638)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHH
Confidence 34455554432222222222224444445554322222556667788888888888777432111 11221 11222334
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHH
Q 043311 103 THEALQLFAQIKDKGHMPDVVAHTAV---IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179 (257)
Q Consensus 103 ~~~a~~~~~~m~~~g~~p~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~ 179 (257)
+|.|...|+.... .|+..||++ --.|.|.++.+.|+--|+.-.+-+ +-|.+....+...+.+ .|..+
T Consensus 471 ~d~a~~~fr~Al~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~-----~k~~d 540 (638)
T KOG1126|consen 471 FDKAMKSFRKALG----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQ-----LKRKD 540 (638)
T ss_pred HHhHHHHHHhhhc----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHH-----hhhhh
Confidence 4555555554333 455555553 344667777777777776665532 2233444444444555 33367
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhhcCCchhhHHh
Q 043311 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA-VKEALIDKRGQGFRGVINI 253 (257)
Q Consensus 180 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~~~~ 253 (257)
+|+.++++..-..-+ |...----...+...++.++|+..++++.. +.|+..+ |..+-..|.+.|..+.|..
T Consensus 541 ~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 541 KALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred HHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHH
Confidence 777777665533211 221111123344556677777777777665 3454433 3333345666666665543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0014 Score=51.89 Aligned_cols=101 Identities=14% Similarity=0.111 Sum_probs=70.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhH
Q 043311 99 KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178 (257)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 178 (257)
+.++++-..-.++.|.+.|+.-|..+|+.||..+-+..- . ....|..+.-+|-+ +-
T Consensus 84 ~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------i-P~nvfQ~~F~HYP~-------QQ 139 (406)
T KOG3941|consen 84 GRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------I-PQNVFQKVFLHYPQ-------QQ 139 (406)
T ss_pred ccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------c-cHHHHHHHHhhCch-------hh
Confidence 457888888999999999999999999999988766542 2 22233334444444 14
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHH
Q 043311 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV-DEARGLLQQM 223 (257)
Q Consensus 179 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~m 223 (257)
+.+..++++|+.+|+.||..+-..|+.++.+.+-. .+..++.--|
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 56777888888888888888888888888776642 3333443333
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.044 Score=46.77 Aligned_cols=105 Identities=13% Similarity=0.156 Sum_probs=52.9
Q ss_pred ccCCCCHHHHHHHHHHHHhCCC-CCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHH
Q 043311 65 DEEPTDPRNLQEIFHKMRTEGL-TNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQGKEA 141 (257)
Q Consensus 65 ~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a 141 (257)
.-..|+++.|...++.+....- .|... .....+.+.++..+|.+.|+.+... .|+ ...+-.+=.+|.+.|+..+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 3345555555555555444211 11111 2444555556666666665555543 333 33444445555555666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 142 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
..+++..... .+-|...|..|-++|...|+
T Consensus 394 i~~L~~~~~~-~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 394 IRILNRYLFN-DPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHHhhc-CCCCchHHHHHHHHHHHhCc
Confidence 6555555544 24455566666666655444
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0091 Score=50.62 Aligned_cols=121 Identities=11% Similarity=0.028 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHH
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTA 202 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 202 (257)
..-.+|+..+...++++.|.++|+++.+.. |+ ....+.+.+... +...+|.+++++.... .+-+....+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~-----~~E~~AI~ll~~aL~~-~p~d~~LL~~ 239 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLM-----NEEVEAIRLLNEALKE-NPQDSELLNL 239 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhc-----CcHHHHHHHHHHHHHh-CCCCHHHHHH
Confidence 345567777888899999999999999764 55 444577777763 3367888888887753 2335666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCchhhHHhhh
Q 043311 203 VFEAFVRAQKVDEARGLLQQMKAKGFVPDEK-AVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
-.+-+.+.++.+.|..+.+++.+. .|+.. +|..|..+|...|+++.|....
T Consensus 240 Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaL 291 (395)
T PF09295_consen 240 QAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLAL 291 (395)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 677788999999999999999874 56555 9999999999999999986543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0034 Score=56.88 Aligned_cols=230 Identities=10% Similarity=0.008 Sum_probs=143.4
Q ss_pred chhhhhhhhcccCCCCccchhhcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCCCcHH-------HHHH
Q 043311 26 RVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-------KMFD 95 (257)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~ll~ 95 (257)
.|..+...+...+++..+.-...+.-...|+-..+.. .+|-+.|+...|..-|.++.+..-..+.. .++.
T Consensus 209 ~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~ 288 (895)
T KOG2076|consen 209 LWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAH 288 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Confidence 3444445555555555555555555555666555555 78889999999999999999864422221 2566
Q ss_pred HHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH--------------
Q 043311 96 ALSKDGLTHEALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY-------------- 160 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~-------------- 160 (257)
.+...++.+.|.+.++..... +-.-+...++++...|.+...++.|......+.....++|..-|
T Consensus 289 ~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~ 368 (895)
T KOG2076|consen 289 YFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALC 368 (895)
T ss_pred HHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccc
Confidence 677777778888887766552 33456677889999999999999999998888873233333222
Q ss_pred --------HHH-HHHHHhccCCcchhHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 043311 161 --------AVL-IKGLAAAADGNAKILGDAQKYLMEMVGKGM--RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229 (257)
Q Consensus 161 --------~~l-l~~~~~~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 229 (257)
..= ++.+...-..+. .+....+...+.+..+ .-+...|.-+.+++...|+++.|+++|..+.+....
T Consensus 369 ~~~~~~s~~l~v~rl~icL~~L~~--~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 369 EVGKELSYDLRVIRLMICLVHLKE--RELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY 446 (895)
T ss_pred cCCCCCCccchhHhHhhhhhcccc--cchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence 110 111111111111 2222223333333332 224456777777888888888888888888776444
Q ss_pred CCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 230 PDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 230 p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
-+...|.-+-..|...|..+.|...|+|
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~k 474 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEK 474 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 4567777777777777887777777654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.051 Score=44.51 Aligned_cols=149 Identities=16% Similarity=0.021 Sum_probs=109.0
Q ss_pred CCCHHHHHHHHHHHHhC-CCCCcHH-----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043311 68 PTDPRNLQEIFHKMRTE-GLTNNAV-----KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEA 141 (257)
Q Consensus 68 ~~~~~~a~~~~~~m~~~-~~~p~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 141 (257)
.+..+.+..-+..+... ...|... .+-..|.+.|++++|...|++..+.. +.+...|+.+=..+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 36777788888777753 3344431 24456788999999999999988853 23568899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043311 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221 (257)
Q Consensus 142 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 221 (257)
...|+...+.. +-+..+|..+-..+.. .|++++|.+.|+...+. .|+..........+...++.++|...|.
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~-----~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~ 189 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYY-----GGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLK 189 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHH
Confidence 99999998753 2246777777777877 55599999999998764 4544322222333445678999999997
Q ss_pred HHHH
Q 043311 222 QMKA 225 (257)
Q Consensus 222 ~m~~ 225 (257)
+...
T Consensus 190 ~~~~ 193 (296)
T PRK11189 190 QRYE 193 (296)
T ss_pred HHHh
Confidence 7653
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0057 Score=43.16 Aligned_cols=54 Identities=13% Similarity=0.031 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhc
Q 043311 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK-GFVPDEKAVKEALIDKRG 244 (257)
Q Consensus 191 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~ 244 (257)
....|+..+..+++.+|+..|++..|.++++...+. ++..+..+|..|+.-+..
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 346788888888888888888888888888888877 888888888888885443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.015 Score=42.09 Aligned_cols=117 Identities=18% Similarity=0.141 Sum_probs=62.3
Q ss_pred hcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhccCCc
Q 043311 99 KDGLTHEALQLFAQIKDKGHMP--DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA--YTYAVLIKGLAAAADGN 174 (257)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~t~~~ll~~~~~~~~~~ 174 (257)
..++...+...++.+.+..-.- .....-.+-..+...|++++|...|+........++. .....+...+..
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~----- 97 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ----- 97 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-----
Confidence 3666666766677666642111 0112222335566677777777777777765422221 122233444555
Q ss_pred chhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043311 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222 (257)
Q Consensus 175 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 222 (257)
.|.+++|...++......+ ....+...=+.|.+.|+.++|...|+.
T Consensus 98 ~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 98 QGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred cCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3447777777755433222 223344455666777777777777664
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.024 Score=40.25 Aligned_cols=102 Identities=17% Similarity=0.107 Sum_probs=76.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
+...+.+.|+.++|.+.|+...+.+ +.+...|..+-..+.+.|++++|..+|+...+.+ +.+..+|..+-..+...|+
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCC
Confidence 5667788899999999998887753 3366788888888888999999999998877664 4456677677777777444
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 203 (257)
++.|...|+...+. .|+...+..+
T Consensus 101 -----~~~A~~~~~~al~~--~p~~~~~~~~ 124 (135)
T TIGR02552 101 -----PESALKALDLAIEI--CGENPEYSEL 124 (135)
T ss_pred -----HHHHHHHHHHHHHh--ccccchHHHH
Confidence 99999999887764 4555554433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.022 Score=41.25 Aligned_cols=115 Identities=13% Similarity=0.021 Sum_probs=85.1
Q ss_pred HHHHHHHhCCCCCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 043311 76 EIFHKMRTEGLTNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154 (257)
Q Consensus 76 ~~~~~m~~~~~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 154 (257)
.+|++..+. .|+.. ..-..+.+.|++++|...|....... +.+...|..+-.++.+.|++++|...|+.....+ +
T Consensus 14 ~~~~~al~~--~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p 89 (144)
T PRK15359 14 DILKQLLSV--DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-A 89 (144)
T ss_pred HHHHHHHHc--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 344444443 23322 35667788999999999999987752 3367788888899999999999999999998763 4
Q ss_pred CCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHH
Q 043311 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201 (257)
Q Consensus 155 ~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 201 (257)
.+...+..+-.++... |+.++|...|+..... .|+..-|.
T Consensus 90 ~~~~a~~~lg~~l~~~-----g~~~eAi~~~~~Al~~--~p~~~~~~ 129 (144)
T PRK15359 90 SHPEPVYQTGVCLKMM-----GEPGLAREAFQTAIKM--SYADASWS 129 (144)
T ss_pred CCcHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh--CCCChHHH
Confidence 5778888888888884 4499999999988763 46554443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.019 Score=41.66 Aligned_cols=128 Identities=16% Similarity=0.066 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCH--
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVA--PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA-- 197 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-- 197 (257)
...|..++..+. .++...+...++.+.+..-. ......-.+-..+.. .|.+++|...|+........|+.
T Consensus 12 ~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~-----~g~~~~A~~~l~~~~~~~~d~~l~~ 85 (145)
T PF09976_consen 12 SALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE-----QGDYDEAKAALEKALANAPDPELKP 85 (145)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhhCCCHHHHH
Confidence 345666777664 88899999999999976322 112333334456666 45599999999999986522322
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
...--|-..+...|++++|...++....... ....+...=..+.+.|+.+.|...|++
T Consensus 86 ~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 86 LARLRLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2334466788899999999999977443332 344555566679999999999998864
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.017 Score=49.31 Aligned_cols=147 Identities=11% Similarity=0.104 Sum_probs=116.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhH
Q 043311 99 KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178 (257)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 178 (257)
..+++..|..+|+...... ..++..|---+.+=.+++.+..|..+|+.-...--..|. .|--.+-.=-..|+ +
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgN-----i 157 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGN-----I 157 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcc-----c
Confidence 3567788999999887753 457778888888889999999999999998764222233 23233333334333 9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 179 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
..|.++|+.-.+ ..|+...|++.|.-=.+.+.++.|..+|++..- +.|+..+|.-...--.++|+++.+..+|+
T Consensus 158 ~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 158 AGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred HHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 999999998765 689999999999999999999999999999876 46999999888888888999988888875
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.054 Score=41.54 Aligned_cols=131 Identities=15% Similarity=0.098 Sum_probs=95.3
Q ss_pred CCCCHHHHHHHHHHHHhCC-CCCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCC--hHHH
Q 043311 67 EPTDPRNLQEIFHKMRTEG-LTNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA-YASAGQ--GKEA 141 (257)
Q Consensus 67 ~~~~~~~a~~~~~~m~~~~-~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~--~~~a 141 (257)
..++.+++...++...+.. -.+... .+-..|...|++++|...|+...+.. .-+...+..+-.+ +...|+ .++|
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 3677788888887766643 222222 46778899999999999999988853 2256677776665 467777 5999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043311 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206 (257)
Q Consensus 142 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 206 (257)
.+++++..+.+ +-+...+..+-..+...|+ +++|...|+.+.+. .+|+..-+..+ ++
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~-----~~~Ai~~~~~aL~l-~~~~~~r~~~i-~~ 186 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQAD-----YAQAIELWQKVLDL-NSPRVNRTQLV-ES 186 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCC-----HHHHHHHHHHHHhh-CCCCccHHHHH-HH
Confidence 99999999874 3377888888888888555 99999999999875 35555544433 54
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.071 Score=49.25 Aligned_cols=200 Identities=11% Similarity=0.007 Sum_probs=139.4
Q ss_pred CCCCCCccccccccccCCCCHHHHHHHHHHHHhCCCCCc-----HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--H
Q 043311 51 SKLPPPYDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNN-----AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDV--V 123 (257)
Q Consensus 51 ~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~ 123 (257)
.+-.|...+.....+-..|+++.|..+...+........ ..-+-++|-..|+++.|...|.+-.+. .+|- .
T Consensus 266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l 343 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVL 343 (1018)
T ss_pred cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccc
Confidence 344555555555777788999999999999887542211 124788999999999999998877664 3443 4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 203 (257)
.+--+-..|.+.|+++.+...|+..... .+-+..|.-++=..|+..+. .....+.|..++...... .+-|...|-.+
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~-~~~~~d~a~~~l~K~~~~-~~~d~~a~l~l 420 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAK-KQEKRDKASNVLGKVLEQ-TPVDSEAWLEL 420 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhh-hhHHHHHHHHHHHHHHhc-ccccHHHHHHH
Confidence 4556788999999999999999999876 24455666666666665321 022346666666665543 23466677666
Q ss_pred HHHHHHcCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 204 FEAFVRAQKVDEARGLLQQM----KAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 204 i~~~~~~~~~~~a~~~~~~m----~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
-..+-..+ ...++.+|... ...|-.+-....+.+-......|+.++|...|+
T Consensus 421 aql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~ 476 (1018)
T KOG2002|consen 421 AQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFK 476 (1018)
T ss_pred HHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHH
Confidence 66665554 44446665544 456666888999999999999999999988875
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.09 Score=44.97 Aligned_cols=124 Identities=17% Similarity=0.079 Sum_probs=95.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcc
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN-AYTYAVLIKGLAAAA 171 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~t~~~ll~~~~~~~ 171 (257)
.-..+...|..++|+..++.+.+. .+-|+..+......+.+.++.++|.+.++.+... .|+ ....-.+-+++.+
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~-- 386 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLK-- 386 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHh--
Confidence 444556788999999999998875 3345667777788899999999999999999875 566 5666677788888
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 172 DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
.|...++..+++..... .+-|...|..|-++|...|+..++.....++..
T Consensus 387 ---~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 387 ---GGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred ---cCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 44488999999888754 455788999999998888777666666555543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.078 Score=45.50 Aligned_cols=182 Identities=17% Similarity=0.099 Sum_probs=125.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCcH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043311 67 EPTDPRNLQEIFHKMRTEGLTNNA--VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRV 144 (257)
Q Consensus 67 ~~~~~~~a~~~~~~m~~~~~~p~~--~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 144 (257)
-.|+.-.+..-|+......-.++. ..+-..|....+.++.+..|.....-.. -|..+|.--=..+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHH
Confidence 356777777777777775544443 2456678888888999999998876421 2445666666667777889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043311 145 FMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 145 ~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 224 (257)
|++-.+-. +-++..|.-+.-+.-+ .+.+++++..|++.... ++--...||..-..+...++++.|.+.|+...
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr-----~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYR-----QHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 99887642 2244555555555555 56699999999998875 56567889999999999999999999999987
Q ss_pred HC-----CCCCCHH--HHHHHHHHhhcCCchhhHHhhhcC
Q 043311 225 AK-----GFVPDEK--AVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 225 ~~-----g~~p~~~--t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
+. ++..+.. ....++..=.+ ++...+++|+.|
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~K 528 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRK 528 (606)
T ss_pred hhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHH
Confidence 53 2222322 22333333233 777777777654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.023 Score=36.45 Aligned_cols=91 Identities=20% Similarity=0.130 Sum_probs=67.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
+...+...|++++|..+|....+.. ..+...+..+-..+...+++++|.+.|+...+.+ +.+..++..+...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~--- 80 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK--- 80 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH---
Confidence 4556777889999999998887652 2234677778888888899999999998887754 3344677777777777
Q ss_pred CcchhHHHHHHHHHHHHh
Q 043311 173 GNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~ 190 (257)
.|..+.|...+.....
T Consensus 81 --~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 --LGKYEEALEAYEKALE 96 (100)
T ss_pred --HHhHHHHHHHHHHHHc
Confidence 4448888888877654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.045 Score=37.57 Aligned_cols=97 Identities=16% Similarity=0.075 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCC--CCCCHHHH
Q 043311 125 HTAVIEAYASAGQGKEALRVFMRMLASGV--APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG--MRPNAGTY 200 (257)
Q Consensus 125 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~ 200 (257)
+-.+...+.+.|++++|...|..+.+..- ......+..+...+.+ .|+++.|...|+.+.... -......+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-----QGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-----hccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 34444555556666666666666654311 1112344445555555 333666666666655321 01112344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 201 TAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
..+-..+.+.|+.++|...++++.+.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 44555556666666666666666654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.13 Score=47.24 Aligned_cols=166 Identities=10% Similarity=0.068 Sum_probs=106.9
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV----KMFDALSKDGLTHEALQLFAQIKDKGHMPDV-VAHTAVIEAYASAGQ 137 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~ 137 (257)
.+..+.|.+++|..+|+...+. .|+.. .+...+.+.+++++|+..++..... .|+. ...+.+=.++.+.|+
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~ 169 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQ 169 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcc
Confidence 5666788888888888888774 55543 4777888888888888888887775 3543 445555566777888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 043311 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 217 (257)
+++|..+|++....+ .-+..++..+-..+...|+ .++|...|+...+. ..|...-|+-.+. ++..-.
T Consensus 170 ~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~-----~~~A~~~~~~a~~~-~~~~~~~~~~~~~------~~~~~~ 236 (694)
T PRK15179 170 SEQADACFERLSRQH-PEFENGYVGWAQSLTRRGA-----LWRARDVLQAGLDA-IGDGARKLTRRLV------DLNADL 236 (694)
T ss_pred hHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHh-hCcchHHHHHHHH------HHHHHH
Confidence 888888888888732 3346777777777777444 88888888877643 2344455554433 455556
Q ss_pred HHHHHHHHCC----CCCCHHHHHHHHHHhhcC
Q 043311 218 GLLQQMKAKG----FVPDEKAVKEALIDKRGQ 245 (257)
Q Consensus 218 ~~~~~m~~~g----~~p~~~t~~~ll~~~~~~ 245 (257)
.+++++.-.+ ...........|.-+.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 237 AALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 6666665443 233333444444444433
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.075 Score=43.46 Aligned_cols=155 Identities=14% Similarity=0.297 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHhc---------CChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCC-
Q 043311 71 PRNLQEIFHKMRTEGLTNNAVKMFDALSKD---------GLTHEALQLFAQIKDKG---HMPDVVAHTAVIEAYASAGQ- 137 (257)
Q Consensus 71 ~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~---------~~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~~~- 137 (257)
++.+.++++.|.+.|..-+..+.+.++.-. .....+..+|+.|+++. ..++..++..||.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 455678899999999988876655544322 23567899999999873 25677788888766 3333
Q ss_pred ---hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHHcCC
Q 043311 138 ---GKEALRVFMRMLASGVAPNAY-TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF-EAFVRAQK 212 (257)
Q Consensus 138 ---~~~a~~~~~~m~~~g~~~~~~-t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li-~~~~~~~~ 212 (257)
.+.+..+|+.+.+.|...+.. -+.+-+-++....+ ......+.++++.+.+.|+++....|..+= -++...+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~--~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~ 233 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDD--QEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPE 233 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccc--hHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCch
Confidence 467788888888888765443 33333333332222 222778999999999999999888876552 22233333
Q ss_pred ---HHHHHHHHHHHHHC-CCC
Q 043311 213 ---VDEARGLLQQMKAK-GFV 229 (257)
Q Consensus 213 ---~~~a~~~~~~m~~~-g~~ 229 (257)
.+...++.+.+.+. |..
T Consensus 234 ~~~~~~i~ev~~~L~~~k~~~ 254 (297)
T PF13170_consen 234 EKIVEEIKEVIDELKEQKGFG 254 (297)
T ss_pred HHHHHHHHHHHHHHhhCcccC
Confidence 45666666666655 433
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.049 Score=37.39 Aligned_cols=95 Identities=19% Similarity=0.119 Sum_probs=58.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGH--MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG--VAPNAYTYAVLIKGL 167 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~t~~~ll~~~ 167 (257)
.+...+.+.|++++|.+.|..+.+..- ......+..+-.++.+.|++++|...|+...... .......+..+...+
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 345566777777778777777765421 1113455567777777777888888887776542 111234555555666
Q ss_pred HhccCCcchhHHHHHHHHHHHHhC
Q 043311 168 AAAADGNAKILGDAQKYLMEMVGK 191 (257)
Q Consensus 168 ~~~~~~~~~~~~~a~~~~~~m~~~ 191 (257)
.+.+ ..+.|...++.+.+.
T Consensus 87 ~~~~-----~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELG-----DKEKAKATLQQVIKR 105 (119)
T ss_pred HHhC-----ChHHHHHHHHHHHHH
Confidence 6633 377777777777654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.044 Score=44.15 Aligned_cols=178 Identities=12% Similarity=0.037 Sum_probs=113.8
Q ss_pred cCCCCccchhhcccCCCCCCcccccc--ccccCCCCHHHHHHHHHHHHh-CCCCCcHH-HHHHHHHhcCChHHHHHHHHH
Q 043311 37 SSSDQPTKKYVNTKSKLPPPYDPFKK--VVDEEPTDPRNLQEIFHKMRT-EGLTNNAV-KMFDALSKDGLTHEALQLFAQ 112 (257)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~-~ll~~~~~~~~~~~a~~~~~~ 112 (257)
+++....+.+.+..++-. +.++.+. ...-+.|++++|.+-|....+ .|..|-.. .+--+-.+.|+.+.|+++.++
T Consensus 125 e~Dl~g~rsLveQlp~en-~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSE 203 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSEN-EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISE 203 (459)
T ss_pred cccCcchHHHHHhccCCC-ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344444444454444321 2222222 566789999999999998887 66777654 577777889999999999999
Q ss_pred HHhCCCC-------------CCHH--------HHHHHHH-------HHHhcCChHHHHHHHHHHH-HCCCCCCHHHHHHH
Q 043311 113 IKDKGHM-------------PDVV--------AHTAVIE-------AYASAGQGKEALRVFMRML-ASGVAPNAYTYAVL 163 (257)
Q Consensus 113 m~~~g~~-------------p~~~--------~~~~li~-------~~~~~~~~~~a~~~~~~m~-~~g~~~~~~t~~~l 163 (257)
+.++|++ ||+. .-..++. .+.+.|+.+.|.+-+.+|. +.--..|.+|...+
T Consensus 204 IieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~ 283 (459)
T KOG4340|consen 204 IIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQ 283 (459)
T ss_pred HHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHH
Confidence 9988753 2321 1223333 3456789999999999887 33356677777765
Q ss_pred HHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043311 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222 (257)
Q Consensus 164 l~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 222 (257)
.-.-... ++.+..+-++-+.+-. +-...||..++-.||++.-++.|-+++.+
T Consensus 284 Al~n~~~------~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 284 ALMNMDA------RPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHhcccC------CccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 4332221 1222233333333321 23567888888999999888888887765
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0038 Score=38.63 Aligned_cols=63 Identities=25% Similarity=0.353 Sum_probs=39.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043311 98 SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163 (257)
Q Consensus 98 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~l 163 (257)
.+.|++++|.++|+...+.. +-+...+-.+..+|.+.|++++|..+++.+... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 45677777777777776542 125566667777777777777777777777654 4454444433
|
... |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.15 Score=44.38 Aligned_cols=148 Identities=14% Similarity=0.214 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHh-CCCCCcHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 043311 71 PRNLQEIFHKMRT-EGLTNNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGKEALRVFM 146 (257)
Q Consensus 71 ~~~a~~~~~~m~~-~~~~p~~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~ 146 (257)
.+.....++.++. ....|+.. .+|+.-.+...+..|..+|.+.++.+..+ ++.+++++|.-|+. +|.+-|+.+|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 4445555555554 23344432 46777777888888999999999888888 78888888886664 55788899987
Q ss_pred H-HHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043311 147 R-MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA--GTYTAVFEAFVRAQKVDEARGLLQQM 223 (257)
Q Consensus 147 ~-m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m 223 (257)
- |++.| -+..--...+.-+...++ -..+..+|+.....++.||. ..|.-+|+-=...|++..+.++-+++
T Consensus 426 LGLkkf~--d~p~yv~~YldfL~~lNd-----d~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 426 LGLKKFG--DSPEYVLKYLDFLSHLND-----DNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHhcC--CChHHHHHHHHHHHHhCc-----chhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 6 44433 122222334444555444 66788888888877666655 57999998888889999998888887
Q ss_pred HHC
Q 043311 224 KAK 226 (257)
Q Consensus 224 ~~~ 226 (257)
...
T Consensus 499 ~~a 501 (656)
T KOG1914|consen 499 FTA 501 (656)
T ss_pred HHh
Confidence 643
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.13 Score=40.51 Aligned_cols=154 Identities=15% Similarity=0.035 Sum_probs=109.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHH--HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK--MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+.-.|+-+....+............... ......+.|++..|..+|.+...- -++|...|+.+=-+|.+.|+.++
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~ 152 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDE 152 (257)
T ss_pred HHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhH
Confidence 444445555555555444333221211112 567778899999999999998774 45788999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 220 (257)
|..-|.+..+-... +...+|.+-=.+.-.|+ .+.|..++..-...+.. |...-..|...-...|++++|.++.
T Consensus 153 Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd-----~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 153 ARRAYRQALELAPN-EPSIANNLGMSLLLRGD-----LEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHHHHHHhccC-CchhhhhHHHHHHHcCC-----HHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999998875322 34455555555555444 99999999988765432 5666677777888999999999987
Q ss_pred HHHH
Q 043311 221 QQMK 224 (257)
Q Consensus 221 ~~m~ 224 (257)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 6544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.14 Score=40.67 Aligned_cols=168 Identities=11% Similarity=0.060 Sum_probs=99.0
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH-----HHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHh--
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-----KMFDALSKDGLTHEALQLFAQIKDKG-HMPDVVAHTAVIEAYAS-- 134 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~-- 134 (257)
..+...|+++.|.+.|+.+...--.+... .+..++.+.++++.|...|++..+.- -.|++ -|--.+.+.+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~~ 118 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhhh
Confidence 55567889999999999888743322222 26677888999999999998887652 22332 33344444331
Q ss_pred c---------------CC---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC
Q 043311 135 A---------------GQ---GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196 (257)
Q Consensus 135 ~---------------~~---~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 196 (257)
. .| ..+|+..|+.+. +-|-. ..-..+|...+..+.+. =
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~-----S~ya~~A~~rl~~l~~~----l 174 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPN-----SQYTTDATKRLVFLKDR----L 174 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcC-----ChhHHHHHHHHHHHHHH----H
Confidence 0 01 123333444433 33222 22244444444444321 0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAK--GFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 197 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
...--.+.+-|.+.|.+..|..=++.+.+. +-.........+..+|...|..+.+.++.
T Consensus 175 a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 175 AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 111113445577888888888888888876 55566777778888888888888776643
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.021 Score=40.33 Aligned_cols=82 Identities=12% Similarity=0.052 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHH---------------HCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHH
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRML---------------ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~---------------~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~ 186 (257)
..++.++|.++++.|+++....+++..= ...+.|+..+..+++.+|+..++ +..|.++++
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~-----i~~al~~vd 76 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGD-----IFSALKLVD 76 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhccc-----HHHHHHHHH
Confidence 3455555555666665555555554321 12345677777777777766333 777777777
Q ss_pred HHH-hCCCCCCHHHHHHHHHHHH
Q 043311 187 EMV-GKGMRPNAGTYTAVFEAFV 208 (257)
Q Consensus 187 ~m~-~~g~~p~~~~~~~li~~~~ 208 (257)
.+. ..+++.+..+|..|++=+.
T Consensus 77 ~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 77 FFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHH
Confidence 655 3566666667776665443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.054 Score=45.62 Aligned_cols=101 Identities=15% Similarity=0.054 Sum_probs=71.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCc
Q 043311 95 DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174 (257)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~ 174 (257)
..+...|+++.|.+.|++..+.. .-+...|..+-.+|.+.|++++|+..+++..+.. +.+...|..+-.+|...|+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~-- 85 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE-- 85 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC--
Confidence 45667788888888888887752 2245677777778888888888888888887753 3356677777777777444
Q ss_pred chhHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043311 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204 (257)
Q Consensus 175 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 204 (257)
++.|...|+..... .|+.......+
T Consensus 86 ---~~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 86 ---YQTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred ---HHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 88888888887753 45555444444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0037 Score=40.66 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=32.6
Q ss_pred CChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCH
Q 043311 136 GQGKEALRVFMRMLASGV-APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA-GTYTAVFEAFVRAQKV 213 (257)
Q Consensus 136 ~~~~~a~~~~~~m~~~g~-~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~ 213 (257)
|+++.|..+|+++.+..- .++...+-.+-..+.+ .|.+++|..+++. .+ +.|+. ...-.+-.+|.+.|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-----~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y 74 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-----QGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKY 74 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-----TTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-H
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-----CCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCH
Confidence 455555555555554321 1122333334444555 3335555555544 11 11111 1111223445555555
Q ss_pred HHHHHHHHH
Q 043311 214 DEARGLLQQ 222 (257)
Q Consensus 214 ~~a~~~~~~ 222 (257)
++|.+++++
T Consensus 75 ~eAi~~l~~ 83 (84)
T PF12895_consen 75 EEAIKALEK 83 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 555555543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.22 Score=40.75 Aligned_cols=167 Identities=14% Similarity=0.204 Sum_probs=108.4
Q ss_pred CHHHHHHHHHHHHhC-----CCCCcHH-HHHHHHHhcCC-h----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC
Q 043311 70 DPRNLQEIFHKMRTE-----GLTNNAV-KMFDALSKDGL-T----HEALQLFAQIKDKGHMPDVVAHTAVIEAYAS--AG 136 (257)
Q Consensus 70 ~~~~a~~~~~~m~~~-----~~~p~~~-~ll~~~~~~~~-~----~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~~ 136 (257)
+.+...++-+.+++. ++..+.. .+...++-.+. + ++..++++.|.+.|+.-+..+|-+..-.... ..
T Consensus 34 d~~~~~~~~~~IK~~t~~fS~lr~~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~ 113 (297)
T PF13170_consen 34 DAERFKEISKYIKKNTGWFSPLRGNHRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKE 113 (297)
T ss_pred CHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccc
Confidence 444555555555552 2333322 34444444444 4 5577889999999999998887774444433 22
Q ss_pred ----ChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHH
Q 043311 137 ----QGKEALRVFMRMLASG---VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG-TYTAVFEAFV 208 (257)
Q Consensus 137 ----~~~~a~~~~~~m~~~g---~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~ 208 (257)
....|..+|+.|++.. ..++-.++.+++.. . .+.-....+.++.+|+.+.+.|+..+-. -+.+-|-++.
T Consensus 114 ~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~-~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~ 190 (297)
T PF13170_consen 114 DYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--T-SEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALS 190 (297)
T ss_pred cHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--c-cccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhc
Confidence 3578999999999874 35677888888765 2 1112344688899999999988877544 3444444443
Q ss_pred HcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043311 209 RAQ---KVDEARGLLQQMKAKGFVPDEKAVKEAL 239 (257)
Q Consensus 209 ~~~---~~~~a~~~~~~m~~~g~~p~~~t~~~ll 239 (257)
... ....+.++++.+.+.|+++....|..+=
T Consensus 191 ~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 191 EGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred cccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 322 2457889999999999998877766553
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.23 Score=44.35 Aligned_cols=176 Identities=14% Similarity=0.071 Sum_probs=105.2
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCCcHH----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043311 66 EEPTDPRNLQEIFHKMRTEGLTNNAV----KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEA 141 (257)
Q Consensus 66 ~~~~~~~~a~~~~~~m~~~~~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 141 (257)
-..||...|..++....+.. |+.. .-+..-+....++.|..+|..... ..|+..+|.--+..-.-.+..++|
T Consensus 595 w~agdv~~ar~il~~af~~~--pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEAN--PNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHH
Confidence 34577777777776666532 2222 234455566667777777766555 345666666666655566667777
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 043311 142 LRVFMRMLASGVAPNA-YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN-AGTYTAVFEAFVRAQKVDEARGL 219 (257)
Q Consensus 142 ~~~~~~m~~~g~~~~~-~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~ 219 (257)
.+++++-.+. -|+- ..|..+=+.+-+ .++++.|.+.|..=.. ..|+ ...|-.|...=-+.|.+..|..+
T Consensus 671 ~rllEe~lk~--fp~f~Kl~lmlGQi~e~-----~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~i 741 (913)
T KOG0495|consen 671 LRLLEEALKS--FPDFHKLWLMLGQIEEQ-----MENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSI 741 (913)
T ss_pred HHHHHHHHHh--CCchHHHHHHHhHHHHH-----HHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHH
Confidence 7777666553 2322 233333333444 2335555554443222 2343 34566666666677788888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 220 LQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 220 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
+++..-++ +-|..-|...|+.-.+.|+.+.|+.+.
T Consensus 742 ldrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 742 LDRARLKN-PKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 88877665 446778888888888888888777654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.079 Score=39.36 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAP--NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
.|..+...+...|++++|...|++.......+ ...+|..+-..+... |..++|...++...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~-----g~~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN-----GEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc-----CCHHHHHHHHHHHH
Confidence 34444444444555555555555544331111 123444444444442 22555555554444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0036 Score=40.70 Aligned_cols=47 Identities=15% Similarity=0.326 Sum_probs=21.4
Q ss_pred CChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043311 101 GLTHEALQLFAQIKDKGH-MPDVVAHTAVIEAYASAGQGKEALRVFMR 147 (257)
Q Consensus 101 ~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 147 (257)
|+++.|..+|+.+.+... .++...+-.+-.+|.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 445555555555544321 11233333345555555555555555544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.011 Score=53.04 Aligned_cols=108 Identities=17% Similarity=0.161 Sum_probs=79.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 043311 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209 (257)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (257)
.+-...+.|.+|..+++.++..+ .-+.-|..+.+.|+..|+ ++.|+++|-+- -.++-.|.+|.+
T Consensus 740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~d-----fe~ae~lf~e~---------~~~~dai~my~k 803 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGD-----FEIAEELFTEA---------DLFKDAIDMYGK 803 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchh-----HHHHHHHHHhc---------chhHHHHHHHhc
Confidence 34455678899999999998763 345568889999999666 99999998653 245667899999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 210 AQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 210 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
+|+|.+|.++-.+. .|-+.....|.+--.-.-.+|.+..|+++|
T Consensus 804 ~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 804 AGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred cccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 99999999987664 343444555555555677778777777765
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.37 Score=44.84 Aligned_cols=188 Identities=13% Similarity=0.042 Sum_probs=125.6
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC---CcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcC--
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDV-VAHTAVIEAYASAG-- 136 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~---p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~-- 136 (257)
.++-..|+++.|...|....+..-. -...-|-..|.+.|+.+.+...|+...+. .||- .+..+|=..|...+
T Consensus 315 Rs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~ 392 (1018)
T KOG2002|consen 315 RSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKK 392 (1018)
T ss_pred HHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhh
Confidence 6777899999999999887763221 12224888999999999999999998874 3544 45554444455443
Q ss_pred --ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 043311 137 --QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214 (257)
Q Consensus 137 --~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 214 (257)
..+.|..++.+-.+. ...|+..|..+-..+....- ...++.-....+.|...+-.+..+..|.+-.-+...|++.
T Consensus 393 ~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e~~d~--~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~ 469 (1018)
T KOG2002|consen 393 QEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLEQTDP--WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIE 469 (1018)
T ss_pred hHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChH
Confidence 456777777766654 25588889888888876322 1112222223334555666688899999999999999999
Q ss_pred HHHHHHHHHHHC---CCCCCH-----H-HHHHHHHHhhcCCchhhHHhhh
Q 043311 215 EARGLLQQMKAK---GFVPDE-----K-AVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 215 ~a~~~~~~m~~~---g~~p~~-----~-t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
.|...|...... ...+|. . +-..+-.....-++.+.|+..|
T Consensus 470 ~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Y 519 (1018)
T KOG2002|consen 470 KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMY 519 (1018)
T ss_pred HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHH
Confidence 999999998765 223333 2 2233333444455777777655
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.1 Score=44.01 Aligned_cols=100 Identities=15% Similarity=-0.029 Sum_probs=68.8
Q ss_pred ccCCCCHHHHHHHHHHHHhCCCCC-cHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 043311 65 DEEPTDPRNLQEIFHKMRTEGLTN-NAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEAL 142 (257)
Q Consensus 65 ~~~~~~~~~a~~~~~~m~~~~~~p-~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 142 (257)
+...|+++.|.+.|++..+..-.. ... .+-.+|.+.|++++|...++...+.. ..+...|..+-.+|...|++++|.
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 446688888888888888743221 111 35667788888888888888887742 224567777778888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH
Q 043311 143 RVFMRMLASGVAPNAYTYAVLIKGL 167 (257)
Q Consensus 143 ~~~~~m~~~g~~~~~~t~~~ll~~~ 167 (257)
..|++..+. .|+.......+..|
T Consensus 91 ~~~~~al~l--~P~~~~~~~~l~~~ 113 (356)
T PLN03088 91 AALEKGASL--APGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHH
Confidence 888888764 45554444444433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.18 Score=43.97 Aligned_cols=144 Identities=12% Similarity=0.097 Sum_probs=111.3
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhccCCcchhHHHH
Q 043311 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP-NAYTYAVLIKGLAAAADGNAKILGDA 181 (257)
Q Consensus 103 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~t~~~ll~~~~~~~~~~~~~~~~a 181 (257)
.+....+++.....-..--+-+|-..|+.-.+..-++.|..+|.+..+.+..+ .+..++++|.-+|. +..+.|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs------kD~~~A 420 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS------KDKETA 420 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc------CChhHH
Confidence 34455566666554322334578888888888888999999999999887666 89999999998885 337899
Q ss_pred HHHHHH-HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhcCCchhhHHhh
Q 043311 182 QKYLME-MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--EKAVKEALIDKRGQGFRGVINIL 254 (257)
Q Consensus 182 ~~~~~~-m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~~~~l 254 (257)
.++|+- |+..| -+..-.+..++-+...|+-..+..+|++....++.|+ ...|..+|.-=+.-|+...+.++
T Consensus 421 frIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~l 494 (656)
T KOG1914|consen 421 FRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKL 494 (656)
T ss_pred HHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 999985 44443 2344556777888888999999999999999976664 47899999999999998888765
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.12 Score=42.83 Aligned_cols=103 Identities=17% Similarity=0.139 Sum_probs=56.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
.|.-|...|....|.++-.+++- ||-..|-..|.+|+..++|++...+-.. +-++.-|-.++.+|.+.
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fkv----~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~-- 250 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFKV----PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY-- 250 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCC----cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC--
Confidence 45555556666666665555432 5666666666666666666665443221 12335666666666663
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 220 (257)
|...+|..++..+ ++.--+..|.+.|++.+|.+.-
T Consensus 251 ---~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 251 ---GNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred ---CCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 3356666655542 1234455566666666665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.014 Score=42.20 Aligned_cols=70 Identities=30% Similarity=0.366 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH-----hCCCCCCHH
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV-----GKGMRPNAG 198 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~-----~~g~~p~~~ 198 (257)
+...++..+...|++++|..+.+.+.... +.|...|..+|.++... |+...|.++|+.+. +.|+.|+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~-----g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQ-----GRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHT-----T-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHC-----cCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 34444445555555555555555555432 33455555555555552 22555555555443 235555554
Q ss_pred H
Q 043311 199 T 199 (257)
Q Consensus 199 ~ 199 (257)
+
T Consensus 138 ~ 138 (146)
T PF03704_consen 138 T 138 (146)
T ss_dssp H
T ss_pred H
Confidence 4
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.26 Score=41.64 Aligned_cols=183 Identities=12% Similarity=0.029 Sum_probs=113.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHH--HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMF--DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll--~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
...-..++++.|+.+-+...+..-..-..-++ ..+...+++++|.-.|+..+.- -+-+..+|.-|+..|...|++.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhchHHH
Confidence 33344555555555555544422111111122 3456789999999999987763 12478899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH-HHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHH
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVL-IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA-GTYTAVFEAFVRAQKVDEARG 218 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~l-l~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~ 218 (257)
|.-+-++..+. +.-+..+.+.+ -..|.. + ...-|+|.++++.-.. +.|+- ...+.+-.-|...|...++..
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~--d--p~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFP--D--PRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeecc--C--chhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHH
Confidence 88777665443 23344444433 122221 1 2224677777766543 34543 356666667777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 219 LLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 219 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
++++-.. ..||....+.|-.........+.+...|
T Consensus 460 LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 460 LLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred HHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHH
Confidence 7777654 4677777777777777777766666555
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.25 Score=39.23 Aligned_cols=141 Identities=12% Similarity=0.059 Sum_probs=97.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
++.++.-.|.+.-....+.+..+..-+-++..-..|.+.-...||.+.|..+|++..+..-+.|..+++.++..-...-.
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~ 262 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH 262 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe
Confidence 44444556667777888888888766778888999999999999999999999998877667788888776654333222
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYT--AVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEA 238 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 238 (257)
..++++..+...+.++...+ .-|....| +|+..| .|+..+|.+.++.|... .|...+..++
T Consensus 263 lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLY--LGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred ecccchHHHHHHHhhccccC-CCchhhhchHHHHHHH--HHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 22344777888887776542 11333333 344444 47899999999998874 4554444433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.033 Score=50.16 Aligned_cols=160 Identities=13% Similarity=0.183 Sum_probs=82.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 043311 67 EPTDPRNLQEIFHKMRTEGLTNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145 (257)
Q Consensus 67 ~~~~~~~a~~~~~~m~~~~~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 145 (257)
..++|..|..+++.+.......... .+-+-|+..|+++.|.++|-+- ..++-.|.+|.++|+|+.|+++-
T Consensus 744 ~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHH
Confidence 3344444444444444333222221 2555666666666666666542 23556677777777777777765
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 146 ~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
.+.. |-+..+..|.+-..-.-+ .|.+.+|++++-.+. .|+ -.|.+|-+.|..|+.+++.++-..
T Consensus 815 ~e~~--~~e~t~~~yiakaedlde-----hgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 815 EECH--GPEATISLYIAKAEDLDE-----HGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHhc--CchhHHHHHHHhHHhHHh-----hcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhCh
Confidence 5442 334444555544444444 344666665553332 233 245666677777777666655322
Q ss_pred CCCCCCHHHHHHHHHHhhcCCchhhHHhh
Q 043311 226 KGFVPDEKAVKEALIDKRGQGFRGVINIL 254 (257)
Q Consensus 226 ~g~~p~~~t~~~ll~~~~~~g~~~~~~~l 254 (257)
.-+ ..|...+-.-+...|+...|+.-
T Consensus 879 d~l---~dt~~~f~~e~e~~g~lkaae~~ 904 (1636)
T KOG3616|consen 879 DHL---HDTHKHFAKELEAEGDLKAAEEH 904 (1636)
T ss_pred hhh---hHHHHHHHHHHHhccChhHHHHH
Confidence 111 23444445555555555555543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.66 Score=42.81 Aligned_cols=120 Identities=13% Similarity=0.083 Sum_probs=68.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+++ |++++|.+++.+..+..- .+-.. +|-..|-+.|+.+++...+-..-. -.+-|...|-.+=....+.|+++.
T Consensus 148 ~lfar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH-L~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 148 NLFAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH-LNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHhcccHHH
Confidence 34444 999999999988887433 23322 566677777777776664433222 122344566666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
|.-.|.+..+.. +++...+---...|-+.|+ ...|...|.++..
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~-----~~~Am~~f~~l~~ 269 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGD-----LKRAMETFLQLLQ 269 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhCh-----HHHHHHHHHHHHh
Confidence 666666665542 3344444444455555333 5555555555554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.029 Score=46.20 Aligned_cols=182 Identities=14% Similarity=0.077 Sum_probs=109.4
Q ss_pred cccCCCCccchhhcccCCCCCCccccccccccCCC-------CHHHHHHHHHHHHhCCCC----CcHHHHHHHHHhcCCh
Q 043311 35 LSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPT-------DPRNLQEIFHKMRTEGLT----NNAVKMFDALSKDGLT 103 (257)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-------~~~~a~~~~~~m~~~~~~----p~~~~ll~~~~~~~~~ 103 (257)
+..++.+.+..+.....+..|-.........++.| ...-|.+.|.-.-..+.. |-..++-.++.-...+
T Consensus 296 L~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qF 375 (557)
T KOG3785|consen 296 LNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQF 375 (557)
T ss_pred cccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHH
Confidence 44455555555554444444443332222222222 234456666555555443 3334566666666677
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhccCCcchhHHHHH
Q 043311 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK-GLAAAADGNAKILGDAQ 182 (257)
Q Consensus 104 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~-~~~~~~~~~~~~~~~a~ 182 (257)
++++-.+..++..-+.-|...|| +-.+++..|.+.+|.++|-......++ |..+|-.++. .|.+ ++..+.||
T Consensus 376 ddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~-----nkkP~lAW 448 (557)
T KOG3785|consen 376 DDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIR-----NKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHh-----cCCchHHH
Confidence 77777777777664444555554 567788888899999999877765555 6667766554 4466 44478888
Q ss_pred HHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 183 KYLMEMVGKGMRPNAGT-YTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 183 ~~~~~m~~~g~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
.++-.+.. +-+..+ ...+..-|.+.+.+--|-+.|++++..
T Consensus 449 ~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 449 DMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 77766543 223333 333446788888888888888888764
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.41 Score=42.48 Aligned_cols=136 Identities=15% Similarity=0.008 Sum_probs=91.6
Q ss_pred CCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhccCC---cchhHHHHHHHHHH
Q 043311 117 GHMPDVVAHTAVIEAYASAG-----QGKEALRVFMRMLASGVAPN-AYTYAVLIKGLAAAADG---NAKILGDAQKYLME 187 (257)
Q Consensus 117 g~~p~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~g~~~~-~~t~~~ll~~~~~~~~~---~~~~~~~a~~~~~~ 187 (257)
+.+.|...|...+++..... +.+.|..+|++..+. .|| ...|..+..++...... ....+..+.+..+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 44567889999999966533 367899999998875 554 34555443333221111 11234444544444
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 188 MVGK-GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 188 m~~~-g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
.... ....+...|.++--.+...|++++|...+++..+.+ |+...|..+-..+...|+.+.|...|+
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3332 233455678777666677899999999999998865 788888888889999999999888765
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.57 Score=43.23 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=73.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
....+.|..++|..+++.....+...+.. .+-.+|...++.++|..+|+...+. .|+-.....+.-+|.+.+++.+
T Consensus 51 Lsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 51 LSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence 67788899999998888877766553332 3666777888899999999888764 5777777777888888887766
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
-.+.=-+|.+ ..+-+.+.|-.+|+.+..
T Consensus 129 qQkaa~~LyK-~~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 129 QQKAALQLYK-NFPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHHHHH-hCCcccchHHHHHHHHHH
Confidence 5555444444 244456666666666554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.35 Score=42.35 Aligned_cols=180 Identities=16% Similarity=0.090 Sum_probs=115.8
Q ss_pred CCCCHHHHHHHHHHHHh--CCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhC--C-CCCCHHHHHHHHHHHHhcCChHHH
Q 043311 67 EPTDPRNLQEIFHKMRT--EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDK--G-HMPDVVAHTAVIEAYASAGQGKEA 141 (257)
Q Consensus 67 ~~~~~~~a~~~~~~m~~--~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g-~~p~~~~~~~li~~~~~~~~~~~a 141 (257)
-.|...+|.+.|..... ....|-+..+--.|.-.|.-+.|+..|...-+- | ..|. .|-. + =|.+.++.+.|
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~--LYlg-m-ey~~t~n~kLA 399 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS--LYLG-M-EYMRTNNLKLA 399 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH--HHHH-H-HHHHhccHHHH
Confidence 33677777777765554 223444445555666666666666665544432 1 1121 1211 1 16677888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC--CC---CC-CHHHHHHHHHHHHHcCCHHH
Q 043311 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK--GM---RP-NAGTYTAVFEAFVRAQKVDE 215 (257)
Q Consensus 142 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~--g~---~p-~~~~~~~li~~~~~~~~~~~ 215 (257)
.+.|.+-..- .+-|+..++-+=-..-. .+.+.+|..+|+.-... .+ .+ -..+++.|=-+|.+.+.+++
T Consensus 400 e~Ff~~A~ai-~P~Dplv~~Elgvvay~-----~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 400 EKFFKQALAI-APSDPLVLHELGVVAYT-----YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred HHHHHHHHhc-CCCcchhhhhhhheeeh-----HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 8888776543 23345555544333333 33488999988876621 11 11 33457777788899999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 216 ARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 216 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
|+..++...... +-|..|++++--.+.-.|+.+.|...|-|
T Consensus 474 AI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 474 AIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred HHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 999999998763 55888999999999999999999988754
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.43 Score=44.81 Aligned_cols=211 Identities=10% Similarity=0.072 Sum_probs=128.1
Q ss_pred hhhhhhhcccCCCCccchhhcccCCCCCCcccccc---ccccCCCCHHHHHH------------------HHHHHHhCCC
Q 043311 28 NATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQE------------------IFHKMRTEGL 86 (257)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~------------------~~~~m~~~~~ 86 (257)
..++......+.++.+.+.........|+...+-. ..+.+.++.+.+.. ++..|...+-
T Consensus 35 ~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~~~~~ 114 (906)
T PRK14720 35 DDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKILLYGE 114 (906)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHHhhhh
Confidence 34444444556666666665555555555444433 33344444444333 3333333222
Q ss_pred CCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043311 87 TNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165 (257)
Q Consensus 87 ~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~ 165 (257)
...+. ++-.+|-+.|+.+++..+|++..+.. .-|+.+.|.+=..|+.. ++++|.+++.+.... -.+..-|+.+..
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--~i~~kq~~~~~e 190 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--FIKKKQYVGIEE 190 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--HHhhhcchHHHH
Confidence 22222 57778888999999999999999875 44678888888889888 999999998887654 222333444444
Q ss_pred HHHhccCCcchhHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 043311 166 GLAAAADGNAKILGDAQKYLMEMVGK-GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKR 243 (257)
Q Consensus 166 ~~~~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 243 (257)
...+.=..+...++.-..+.+.+... |..--..++-.+-..|-..++|+++..+++...+.. .-|.....-++..|.
T Consensus 191 ~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 191 IWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 32221111122244444455555432 445556677778888889999999999999998864 235555666666544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.26 Score=43.90 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
..|++|-+-|.+.|++++|.++|++-.+. ..+..-|+.+.++|+.
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHH
Confidence 35999999999999999999999987664 4466667777777665
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.23 Score=42.38 Aligned_cols=140 Identities=19% Similarity=0.234 Sum_probs=99.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhc
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKG-HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY-AVLIKGLAAA 170 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~-~~ll~~~~~~ 170 (257)
.|+...+...++.|..+|.+.++.| +.+++.+++++|.-++ .|+...|..+|+-=..+ -||...| .-.+.-+...
T Consensus 403 ~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~i 479 (660)
T COG5107 403 HLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRI 479 (660)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHh
Confidence 4555556677888999999999998 6788999999999665 56678899999763332 3344444 3455556665
Q ss_pred cCCcchhHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 043311 171 ADGNAKILGDAQKYLMEMVGKGMRPN--AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKR 243 (257)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 243 (257)
++ -+.|..+|+.-..+ +.-+ ...|..+|+-=...|++..+..+-++|.. +.|...+...+..-|.
T Consensus 480 nd-----e~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 480 ND-----EENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred Cc-----HHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 55 77888888844321 2223 46799999988999999999999888876 4677666666665554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.023 Score=34.75 Aligned_cols=56 Identities=25% Similarity=0.206 Sum_probs=40.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 150 (257)
-..+.+.|++++|.++|+...+.. +-+...|..+=.++...|++++|..+|++..+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677788888888888887764 22556777777777888888888888887765
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.039 Score=39.90 Aligned_cols=72 Identities=15% Similarity=0.190 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHH
Q 043311 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA-----KGFVPDEK 233 (257)
Q Consensus 159 t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~ 233 (257)
+...++..+.. .|.++.|..+.+.+... -+.|...|..+|.+|...|+...|.+.|+++.+ .|+.|+..
T Consensus 64 ~~~~l~~~~~~-----~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLE-----AGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHH-----TT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHh-----ccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 44555555666 33377777777776654 255777777777777777777777777776642 37777766
Q ss_pred HHH
Q 043311 234 AVK 236 (257)
Q Consensus 234 t~~ 236 (257)
|-.
T Consensus 138 ~~~ 140 (146)
T PF03704_consen 138 TRA 140 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.024 Score=34.93 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 176 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
|++++|.++|+.+.... +-+...+-.+..+|.+.|++++|..+++++..
T Consensus 5 ~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp THHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred cCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33555555555554321 11344444455555555555555555555554
|
... |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.79 Score=41.17 Aligned_cols=179 Identities=13% Similarity=0.165 Sum_probs=117.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-
Q 043311 69 TDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR- 147 (257)
Q Consensus 69 ~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~- 147 (257)
.+.+.|.-++.+..+ +-|....|..+|.+...++.|..+++..++. ++.+..+|-+--..=-.+|+.+....++++
T Consensus 390 E~~~darilL~rAve--ccp~s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rg 466 (913)
T KOG0495|consen 390 EEPEDARILLERAVE--CCPQSMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRG 466 (913)
T ss_pred cChHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 333444444444444 4555556788888888888888888888875 666777887776666777888777777654
Q ss_pred ---HHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043311 148 ---MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP--NAGTYTAVFEAFVRAQKVDEARGLLQQ 222 (257)
Q Consensus 148 ---m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~ 222 (257)
+...|++.|..-|..=...|-+ .|..-.|..++.....-|+.- -..||+.--+.|.+.+.++.|..+|..
T Consensus 467 l~~L~~ngv~i~rdqWl~eAe~~e~-----agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 467 LSELQANGVEINRDQWLKEAEACED-----AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHhhcceeecHHHHHHHHHHHhh-----cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 4456788888777777777777 333667777776666555433 234677777777777777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 223 MKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 223 m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
..+- ..-+...|......--..|..+..+.+|.
T Consensus 542 alqv-fp~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 542 ALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred HHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 6653 23344555555555556666666665554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.28 Score=37.79 Aligned_cols=174 Identities=15% Similarity=0.071 Sum_probs=86.3
Q ss_pred cccCCCCHHHHHHHHHHHHhCC-CCCcHH----HHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCC
Q 043311 64 VDEEPTDPRNLQEIFHKMRTEG-LTNNAV----KMFDALSKDGLTHEALQLFAQIKDKG-HMPDVVAHTAVIEAYASAGQ 137 (257)
Q Consensus 64 ~~~~~~~~~~a~~~~~~m~~~~-~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~ 137 (257)
..-..|++..|.+.|+.+...- ..|-.. .+..++.+.|+++.|...|+.+.+.- -.|. .-+-..+.+.+.-..
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-ADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-hhhHHHHHHHHHHHh
Confidence 3445677788888887777632 122221 36777777788888877777765531 1222 222222333222111
Q ss_pred hHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 043311 138 GKEALRVFMRMLASGVA---PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~~---~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 214 (257)
..... ....+.. --..+|..+++-|-. ....++|...+..+.+. . ...=-.+.+-|.+.|.+.
T Consensus 93 ~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~-----S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 93 IPGIL-----RSDRDQTSTRKAIEEFEELIKRYPN-----SEYAEEAKKRLAELRNR---L-AEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHH------TT---HHHHHHHHHHHHHHHH-TT-----STTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHCTT-HH
T ss_pred Cccch-----hcccChHHHHHHHHHHHHHHHHCcC-----chHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHcccHH
Confidence 11110 0000000 011233344444433 33355555555544431 0 111112446688899999
Q ss_pred HHHHHHHHHHHC--CCCCCHHHHHHHHHHhhcCCchhhHH
Q 043311 215 EARGLLQQMKAK--GFVPDEKAVKEALIDKRGQGFRGVIN 252 (257)
Q Consensus 215 ~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~~~ 252 (257)
.|..-++.+.+. +-.-.......++.++.+-|..+.+.
T Consensus 159 aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 159 AAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999876 33333456677888888888877554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.15 Score=42.10 Aligned_cols=180 Identities=11% Similarity=0.125 Sum_probs=94.3
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHH-----Hh----cCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDAL-----SK----DGLTHEALQLFAQIKDKGHMPDV-VAHTAVIEAY 132 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~-----~~----~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~ 132 (257)
..+.+.+++++|..+.+++. +..|-.. ++.+. .+ ..+..-|...|.-..+.+..-|+ .--.++-..+
T Consensus 293 iYyL~q~dVqeA~~L~Kdl~--PttP~Ey-ilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 293 IYYLNQNDVQEAISLCKDLD--PTTPYEY-ILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred eeecccccHHHHHHHHhhcC--CCChHHH-HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 55566777777766655432 1223221 22222 11 11233355555555555444333 2344555555
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHHcC
Q 043311 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF-EAFVRAQ 211 (257)
Q Consensus 133 ~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li-~~~~~~~ 211 (257)
.-..++++++-.++.+...=..-|...|| +.++.+..|+ ..+|+++|-.+....++ |..+|.+++ ++|.+.+
T Consensus 370 FL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgn-----y~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGN-----YVEAEELFIRISGPEIK-NKILYKSMLARCYIRNK 442 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcC-----hHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcC
Confidence 66666777777777666653343444443 4556666444 77777777665543333 455555444 6677777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HhhcCCchhhHHhhh
Q 043311 212 KVDEARGLLQQMKAKGFVPDEKAVKEALI-DKRGQGFRGVINILF 255 (257)
Q Consensus 212 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~g~~~~~~~l~ 255 (257)
....|++++-.+. -..+..+...+|. .|...+++--+.+-|
T Consensus 443 kP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAF 484 (557)
T KOG3785|consen 443 KPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAF 484 (557)
T ss_pred CchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777776665543 2334444444443 466666655444444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.49 Score=39.12 Aligned_cols=202 Identities=13% Similarity=0.149 Sum_probs=120.7
Q ss_pred hcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCCCcHH-----------------HHHHHHHhcCChHHH
Q 043311 47 VNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-----------------KMFDALSKDGLTHEA 106 (257)
Q Consensus 47 ~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----------------~ll~~~~~~~~~~~a 106 (257)
+.+...++|+...-.+ ..+.+.|.++.|..=|+...+........ ..+..+...|+...|
T Consensus 95 l~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 95 LSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNA 174 (504)
T ss_pred HHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhH
Confidence 4555567777655555 78889999999999999998864422211 135556668888889
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC-------------
Q 043311 107 LQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD------------- 172 (257)
Q Consensus 107 ~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~------------- 172 (257)
++....+.+ +.| |...|..--.+|...|++..|..=++...+.. .-|+.++--+-..+-..|+
T Consensus 175 i~~i~~llE--i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 175 IEMITHLLE--IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHh--cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 888888876 333 66777777788888888888776665554432 2233333333333334333
Q ss_pred ----------------------------CcchhHHHHHHHHHHHHhCCCCCC--HHH---HHHHHHHHHHcCCHHHHHHH
Q 043311 173 ----------------------------GNAKILGDAQKYLMEMVGKGMRPN--AGT---YTAVFEAFVRAQKVDEARGL 219 (257)
Q Consensus 173 ----------------------------~~~~~~~~a~~~~~~m~~~g~~p~--~~~---~~~li~~~~~~~~~~~a~~~ 219 (257)
.+.+.|.++.+-.+...+. .|. .+. +..+=.++...+++.+|+..
T Consensus 252 ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 252 LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 1123344444444444332 232 222 33344455566778888877
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHhhcCCchhhHHhhh
Q 043311 220 LQQMKAKGFVPD-EKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 220 ~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
..+..+ +.|| ..++.---.+|...-+++.|..=|
T Consensus 330 C~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dy 364 (504)
T KOG0624|consen 330 CKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDY 364 (504)
T ss_pred HHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 777765 3454 566666566666655555555433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.24 Score=34.65 Aligned_cols=100 Identities=21% Similarity=0.236 Sum_probs=56.9
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH-----HHHHHHHhcCChHHHHHHHHHHHhCCCCCC---H-HHHHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-----KMFDALSKDGLTHEALQLFAQIKDKGHMPD---V-VAHTAVIEAYA 133 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~---~-~~~~~li~~~~ 133 (257)
.++-..|+.++|..+|+.....|+..... .+-+.|...|++++|..+|+...... |+ . .....+--++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 34456677777777777777776655432 25566667777777777777666542 32 1 11111222456
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043311 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168 (257)
Q Consensus 134 ~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~ 168 (257)
..|+.++|++++-.... ++..-|.--|..|+
T Consensus 87 ~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 66777777777765542 23335555555444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.35 Score=45.42 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=15.9
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 134 ~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
+.|+.+++..+|+++.+.. .-|+...|.+--.|+.
T Consensus 128 k~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 128 KLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEE 162 (906)
T ss_pred HcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 3344444444444444443 3344444444444444
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.26 Score=39.92 Aligned_cols=157 Identities=15% Similarity=0.118 Sum_probs=98.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-------------CHH----
Q 043311 96 ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP-------------NAY---- 158 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~-------------~~~---- 158 (257)
...+.|+.+.|.+-|....+-|---....||..+.-|. .|+...|++...++.+.|++- |..
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~-~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS-SRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGN 231 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh-hhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccc
Confidence 34688999999999998877643344678888887664 567899999999998876542 211
Q ss_pred HH----HHHHHHHHhcc--CCcchhHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 043311 159 TY----AVLIKGLAAAA--DGNAKILGDAQKYLMEMVG-KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231 (257)
Q Consensus 159 t~----~~ll~~~~~~~--~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 231 (257)
|. ..++.++--.. ....++++.|.+-+-+|.- ..-..|.+|...+--.- -.+++.+..+=+.-+...+- ..
T Consensus 232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP 309 (459)
T KOG4340|consen 232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FP 309 (459)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CC
Confidence 11 12222210000 0123458888888888862 23344556543332211 23445555555555555533 45
Q ss_pred HHHHHHHHHHhhcCCchhhHHhhh
Q 043311 232 EKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 232 ~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
..||..++--|+++..++.|..++
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHH
Confidence 679999999999999988887664
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.41 Score=45.02 Aligned_cols=114 Identities=14% Similarity=0.215 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHH
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 201 (257)
...|.-+-.+-.+.|.+.+|.+-|-+- -|...|..+++.+.+ .|.|++-.+++...++..-+|... +
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~-----~~~~edLv~yL~MaRkk~~E~~id--~ 1170 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASR-----TGKYEDLVKYLLMARKKVREPYID--S 1170 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHh-----cCcHHHHHHHHHHHHHhhcCccch--H
Confidence 456777777777777777776655322 266778888888888 444888888777776665555554 3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
.||-+|++.+++.+.+++. .-||......+=+-|...|.++.|.-+|
T Consensus 1171 eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1171 ELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred HHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 5778888888877665554 3477777777777777777777776554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.57 Score=37.03 Aligned_cols=146 Identities=15% Similarity=0.072 Sum_probs=105.4
Q ss_pred cCChHHHHHHHHHHHhC---C-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhccC
Q 043311 100 DGLTHEALQLFAQIKDK---G-HMPDVV-AHTAVIEAYASAGQGKEALRVFMRMLASG--VAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 100 ~~~~~~a~~~~~~m~~~---g-~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~t~~~ll~~~~~~~~ 172 (257)
..+.++..+++.++... | ..++.. .|.-++-+....|+.+.|...++.+...- ...=...+..++.+-..
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~--- 101 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGN--- 101 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhc---
Confidence 45678888888888643 4 567764 57788888999999999999999998762 22222445555665544
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHH
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~ 252 (257)
+++|.++++.+.+.+ +-|.++|--=+...-..|+--+|++-+..-.+. +.-|...|.-+-.-|...|++++|-
T Consensus 102 -----~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 102 -----YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred -----hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHH
Confidence 999999999999765 446666654444444556555666655555543 6789999999999999999999886
Q ss_pred hhh
Q 043311 253 ILF 255 (257)
Q Consensus 253 ~l~ 255 (257)
-.+
T Consensus 175 fCl 177 (289)
T KOG3060|consen 175 FCL 177 (289)
T ss_pred HHH
Confidence 443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.43 Score=35.52 Aligned_cols=76 Identities=17% Similarity=0.103 Sum_probs=44.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPD--VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
+-..+...|++++|...|++..+....+. ...|..+-..+.+.|++++|...+++..+.. +-+...+..+...+..
T Consensus 41 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 118 (172)
T PRK02603 41 DGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIYHK 118 (172)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 44455666777777777777665432221 3466666677777777777777777766542 2234444444444444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.2 Score=45.03 Aligned_cols=159 Identities=12% Similarity=0.025 Sum_probs=111.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCCHHHHHHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS-----G-VAPNAYTYAVLIK 165 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~~~~~t~~~ll~ 165 (257)
.++.+|...|+-.+|..+..+-.+ -+||...|..+-+......-+++|.++++..... | ...+...|....+
T Consensus 429 ~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~ 506 (777)
T KOG1128|consen 429 PVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADK 506 (777)
T ss_pred HHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHH
Confidence 389999999999999998877766 3688889999888888877788888888765422 1 1112223333333
Q ss_pred HHHhccC----------------CcchhHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 043311 166 GLAAAAD----------------GNAKILGDAQKYLMEMVGKGMRPNA-GTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228 (257)
Q Consensus 166 ~~~~~~~----------------~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 228 (257)
.+-..-. -..+++..+.+.|..-.. ..||. ..||.+-.+|.+.++-.+|...+.+..+.+
T Consensus 507 hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn- 583 (777)
T KOG1128|consen 507 HLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN- 583 (777)
T ss_pred HHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-
Confidence 2221111 112447777777766554 35654 679999999999999999999999998887
Q ss_pred CCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 229 VPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 229 ~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
.-+...+-..+-.....|+++.|.+.+
T Consensus 584 ~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 584 YQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred CCCCeeeechhhhhhhcccHHHHHHHH
Confidence 556667777777778888887776654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.58 Score=34.82 Aligned_cols=115 Identities=16% Similarity=0.116 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHH
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN--AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 199 (257)
...|..+-..+...|++++|...|++..+.+-.++ ...|..+-..+.+.|+ ++.|...+++..... +-+...
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~-p~~~~~ 108 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE-----HDKALEYYHQALELN-PKQPSA 108 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhC-cccHHH
Confidence 34566666777778888888888888775432222 3566677777777444 888888888777543 335666
Q ss_pred HHHHHHHHHHcCC--------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 043311 200 YTAVFEAFVRAQK--------------VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246 (257)
Q Consensus 200 ~~~li~~~~~~~~--------------~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 246 (257)
+..+-..+...|+ +++|.+++++.... .|+. +..++..+...|
T Consensus 109 ~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~ 165 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcC
Confidence 6677777777666 57788888877653 3443 545555444443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.36 Score=35.80 Aligned_cols=113 Identities=12% Similarity=0.048 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHH
Q 043311 138 GKEALRVFMRML-ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP--NAGTYTAVFEAFVRAQKVD 214 (257)
Q Consensus 138 ~~~a~~~~~~m~-~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~~~~~ 214 (257)
...+...+..+. ..+..--...|..+...+... |.+++|...|+......-.+ ...+|..+-..+...|+++
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~-----g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~ 89 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSE-----GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHT 89 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHH
Confidence 334444555553 333333345666666667774 44999999999887542222 2347888889999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhh-------cCCchhhHHhhhc
Q 043311 215 EARGLLQQMKAKGFVPDEKAVKEALIDKR-------GQGFRGVINILFG 256 (257)
Q Consensus 215 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~g~~~~~~~l~~ 256 (257)
+|...+++..... +....++..+...+. ..|+.+.+...++
T Consensus 90 eA~~~~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 90 KALEYYFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 9999999988752 233455666666666 7777776655543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.72 Score=38.22 Aligned_cols=105 Identities=18% Similarity=0.183 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHH
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTA 202 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 202 (257)
.+.+..|.-|...|+...|..+-.+.. .||..-|...+++++..++ |++-.++-.. +-+.+-|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~-----w~eL~~fa~s------kKsPIGyep 242 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKD-----WDELEKFAKS------KKSPIGYEP 242 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCC-----HHHHHHHHhC------CCCCCChHH
Confidence 355666777888899888877766663 5899999999999999555 8877765432 224588999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHH
Q 043311 203 VFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252 (257)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~ 252 (257)
++..|.+.|+..+|..+..+ +.+ ..-+..|.+.|++..|.
T Consensus 243 Fv~~~~~~~~~~eA~~yI~k-----~~~-----~~rv~~y~~~~~~~~A~ 282 (319)
T PF04840_consen 243 FVEACLKYGNKKEASKYIPK-----IPD-----EERVEMYLKCGDYKEAA 282 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHh-----CCh-----HHHHHHHHHCCCHHHHH
Confidence 99999999999999999888 222 23334555556555543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.71 Score=34.24 Aligned_cols=129 Identities=15% Similarity=0.151 Sum_probs=85.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHH
Q 043311 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185 (257)
Q Consensus 106 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~ 185 (257)
..+....+.+.++.|+...|..+|+.+.+.|+.. .+..+.+.++-+|+......+-..... ...+.++=
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~~-------~~~~~Ql~ 81 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGNQ-------YPPAYQLG 81 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHcc-------ChHHHHHH
Confidence 3566677778899999999999999999999754 456777888888888877666544331 33444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHh
Q 043311 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINI 253 (257)
Q Consensus 186 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 253 (257)
-+|..+ =...+..+++.+...|++-+|.++.+..... +...-..++.+....++...-..
T Consensus 82 lDMLkR----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~ 141 (167)
T PF07035_consen 82 LDMLKR----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYA 141 (167)
T ss_pred HHHHHH----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHH
Confidence 444432 1225677888888999999999988775322 11222445666666655544333
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.47 E-value=1.7 Score=39.00 Aligned_cols=142 Identities=11% Similarity=0.102 Sum_probs=93.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCHHHHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS------GVAPNAYTYAVLIKG 166 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~~~~~t~~~ll~~ 166 (257)
.+......+.++-+..+|+...+- ++..-+--|.-+++.+++++|-+.+...... .-+-+...|.-+...
T Consensus 144 yl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdl 219 (835)
T KOG2047|consen 144 YLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDL 219 (835)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHH
Confidence 444455566667777777777663 4555777788888888888888887666422 234566677777776
Q ss_pred HHhccCCcchhHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 043311 167 LAAAADGNAKILGDAQKYLMEMVGKGMRPNA--GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244 (257)
Q Consensus 167 ~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 244 (257)
..++.+ .+.--....++..+.. .-+|. ..|++|.+-|.+.|+++.|.++|++....- .+..-|+.+.++|+.
T Consensus 220 is~~p~--~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 220 ISQNPD--KVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHhCcc--hhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHH
Confidence 666444 2222233344444432 23454 469999999999999999999999987653 355566677776654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.61 Score=33.33 Aligned_cols=125 Identities=14% Similarity=0.129 Sum_probs=88.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~ 171 (257)
.++..+...+.+.....+++.+...+ ..+...+|.+|..|++.+. ++..+.+.. ..+......+++.|.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~-- 81 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK-- 81 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH--
Confidence 58888888889999999999988876 3678899999999998753 455555542 1234445558888888
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 043311 172 DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA-QKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 244 (257)
.+.++.+.-++..+.. ... .++.+... ++.+.|.+++.+ .-+...|..++..+..
T Consensus 82 ---~~l~~~~~~l~~k~~~-----~~~----Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 ---AKLYEEAVELYKKDGN-----FKD----AIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALLD 137 (140)
T ss_pred ---cCcHHHHHHHHHhhcC-----HHH----HHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHHc
Confidence 5558888888877642 222 33333444 788888888876 2366788888877654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.5 Score=41.45 Aligned_cols=149 Identities=9% Similarity=0.068 Sum_probs=94.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 043311 96 ALSKDGLTHEALQLFAQIKDKGHM--------PDVVAHTAVIEAYASAGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKG 166 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~t~~~ll~~ 166 (257)
.|...|.-..|+..++.......+ ++...=+. ..+.....+....++|-++... +.++|...+..|=-.
T Consensus 362 SytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL 439 (579)
T KOG1125|consen 362 SYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL 439 (579)
T ss_pred HHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH
Confidence 445566667777777776543210 01000000 2233333456667777777644 544555555555444
Q ss_pred HHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhc
Q 043311 167 LAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD-EKAVKEALIDKRG 244 (257)
Q Consensus 167 ~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~ 244 (257)
|-- .|.+++|..+|+.... ++| |..+||-|=..++...+-.+|...|.+..+ ++|+ .+....|-.+|..
T Consensus 440 y~l-----s~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mN 510 (579)
T KOG1125|consen 440 YNL-----SGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMN 510 (579)
T ss_pred Hhc-----chHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhh
Confidence 445 3449999999998875 456 556899999999999999999999999887 4554 2344556667777
Q ss_pred CCchhhHHhhh
Q 043311 245 QGFRGVINILF 255 (257)
Q Consensus 245 ~g~~~~~~~l~ 255 (257)
.|.+.+|.+.|
T Consensus 511 lG~ykEA~~hl 521 (579)
T KOG1125|consen 511 LGAYKEAVKHL 521 (579)
T ss_pred hhhHHHHHHHH
Confidence 88777776554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.29 Score=30.40 Aligned_cols=56 Identities=18% Similarity=0.102 Sum_probs=34.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043311 95 DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151 (257)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 151 (257)
..|.+.++++.|.++++.+.+.. +.+...|...=.++.+.|++++|...|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35566667777777777666642 124455555556666667777777777666654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.00 E-value=2 Score=36.59 Aligned_cols=47 Identities=15% Similarity=0.211 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043311 176 KILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 176 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 224 (257)
++.+.|.-.|..... +.| +...|.-|+.+|...|.+.+|.-+-....
T Consensus 348 ~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~ 395 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTI 395 (564)
T ss_pred cchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 345666655655443 232 55677777777777777776666554443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.35 Score=44.57 Aligned_cols=110 Identities=18% Similarity=0.230 Sum_probs=65.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcch
Q 043311 99 KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY--ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176 (257)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~ 176 (257)
..+++..|....+.+.+. .|+. .|..++.++ .+.|+.++|..+++.....+.. |..|..++-..|.+ .+
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d-----~~ 91 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRD-----LG 91 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHH-----Hh
Confidence 355666666666655443 1332 334444443 4556777777766666655433 66777777666666 44
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043311 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219 (257)
Q Consensus 177 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 219 (257)
+.+++..+|+.... ..|+......+..+|++.+++.+-.++
T Consensus 92 ~~d~~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQka 132 (932)
T KOG2053|consen 92 KLDEAVHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKA 132 (932)
T ss_pred hhhHHHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777776654 356666666677777777666544443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.34 Score=29.34 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=32.3
Q ss_pred chhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 175 AKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 175 ~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
.|++++|.+.|+...+.. | +...+..+-..+...|++++|..+|++..+
T Consensus 10 ~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 10 QGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp CTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444777777777777653 4 445566666777777777777777777764
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=3.8 Score=39.08 Aligned_cols=158 Identities=13% Similarity=0.075 Sum_probs=98.7
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH-------HHHHHHHhcCChHHHHHHHHHHHhC----CC-CCCHHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-------KMFDALSKDGLTHEALQLFAQIKDK----GH-MPDVVAHTAVIE 130 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~ll~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~ 130 (257)
..+...|+++.+...++.....-...+.. .+-..+...|+++.|...+.+..+. |- .....++..+-.
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 44567899999999998877631111211 1344566789999999988877643 11 111234555566
Q ss_pred HHHhcCChHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC--CCCCC--HHH
Q 043311 131 AYASAGQGKEALRVFMRMLAS----GVA--P-NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK--GMRPN--AGT 199 (257)
Q Consensus 131 ~~~~~~~~~~a~~~~~~m~~~----g~~--~-~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~--g~~p~--~~~ 199 (257)
.+...|++++|...+++.... |.. + ....+..+-..+.. .|+++.|...+++.... ...+. ...
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-----~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE-----WARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH-----hcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 778899999999998876542 221 1 22334444444555 34488988888776531 11122 233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 200 YTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 200 ~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
+..+-..+...|+.+.|.+.+++...
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455677788999999998888754
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=1.2 Score=35.92 Aligned_cols=100 Identities=18% Similarity=0.171 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC-
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA----YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN- 196 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~- 196 (257)
...|+..+..+.+.|++++|...|+.+.+. .|+. ..+--+-..|...|+ ++.|...|+.+.+. .|+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~-----~~~A~~~f~~vv~~--yP~s 213 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGK-----KDDAAYYFASVVKN--YPKS 213 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHH--CCCC
Confidence 345777777767789999999999999875 3332 455556667777444 99999999998753 122
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 043311 197 ---AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232 (257)
Q Consensus 197 ---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 232 (257)
...+--+...+...|+.+.|..+|++..+. .|+.
T Consensus 214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s 250 (263)
T PRK10803 214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK--YPGT 250 (263)
T ss_pred cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 223333455677889999999999998875 4554
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.71 E-value=1.1 Score=32.23 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=52.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 96 ALSKDGLTHEALQLFAQIKDKG-H-MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~g-~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
...+.|++++|.+.|+.+..+- . .-....--.++.+|.+.+++++|...+++..+.+-.--..-|...+.|++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3456788888888888887761 1 123455667888888888888888888888876433233667777777766
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.62 E-value=2.5 Score=36.40 Aligned_cols=123 Identities=12% Similarity=0.144 Sum_probs=92.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHH-HHhCCCCCCHH
Q 043311 121 DVVAHTAVIEAYASAGQGKEALRVFMRMLASG-VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME-MVGKGMRPNAG 198 (257)
Q Consensus 121 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~-m~~~g~~p~~~ 198 (257)
-+.+|.+.|..-.+..-++.|..+|-+..+.| +.+++..++++|..++. |....|..+|+- |... ||..
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~------~d~~ta~~ifelGl~~f---~d~~ 466 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT------GDRATAYNIFELGLLKF---PDST 466 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc------CCcchHHHHHHHHHHhC---CCch
Confidence 46788899999888888999999999999999 78999999999998875 336788888875 4332 4444
Q ss_pred H-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhcCCchhhHHh
Q 043311 199 T-YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--EKAVKEALIDKRGQGFRGVINI 253 (257)
Q Consensus 199 ~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~~~~ 253 (257)
. .+-.+.-+.+-++-..|..+|+.-..+ +.-+ ..+|..+|.--...|+...+..
T Consensus 467 ~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~s 523 (660)
T COG5107 467 LYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYS 523 (660)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHh
Confidence 3 455666677888989999999954433 2222 4688888888888887755543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=94.62 E-value=1 Score=31.47 Aligned_cols=57 Identities=21% Similarity=0.168 Sum_probs=37.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043311 95 DALSKDGLTHEALQLFAQIKDKGHMPDV--VAHTAVIEAYASAGQGKEALRVFMRMLAS 151 (257)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 151 (257)
.++-..|+.++|..+|+.-.+.|..... ..+-.+=..+...|++++|..+|++....
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455667777777777777777665442 23444555667777777777777776654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.59 E-value=2.6 Score=37.09 Aligned_cols=173 Identities=13% Similarity=0.084 Sum_probs=107.1
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHh----cCChHHHHHHH
Q 043311 76 EIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDK-GHMPD-----VVAHTAVIEAYAS----AGQGKEALRVF 145 (257)
Q Consensus 76 ~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~-----~~~~~~li~~~~~----~~~~~~a~~~~ 145 (257)
-+|.-+... ++|....++....-.|+-+.+++.+.+-.+. ++.-. .-.|+.++..+.. ..+.+.+.+++
T Consensus 178 G~f~L~lSl-LPp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL 256 (468)
T PF10300_consen 178 GLFNLVLSL-LPPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELL 256 (468)
T ss_pred HHHHHHHHh-CCHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHH
Confidence 334444432 3455556888888889999999988776553 22211 2346666655544 45678999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC--CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043311 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK--GMR--PNAGTYTAVFEAFVRAQKVDEARGLLQ 221 (257)
Q Consensus 146 ~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~--g~~--p~~~~~~~li~~~~~~~~~~~a~~~~~ 221 (257)
..+.+. -|+..-|...-.-+... .|+++.|.+.|+..... ..+ .....|. +.-.+.-..+|++|.+.|.
T Consensus 257 ~~~~~~--yP~s~lfl~~~gR~~~~----~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~E-l~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 257 EEMLKR--YPNSALFLFFEGRLERL----KGNLEEAIESFERAIESQSEWKQLHHLCYFE-LAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHh--CCCcHHHHHHHHHHHHH----hcCHHHHHHHHHHhccchhhHHhHHHHHHHH-HHHHHHHHchHHHHHHHHH
Confidence 999875 67877665544333221 45599999999975431 111 1122233 3334666789999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHh-hcCCch-------hhHHhhhcC
Q 043311 222 QMKAKGFVPDEKAVKEALIDK-RGQGFR-------GVINILFGK 257 (257)
Q Consensus 222 ~m~~~g~~p~~~t~~~ll~~~-~~~g~~-------~~~~~l~~k 257 (257)
++.+.. ..+..+|..+..+| ...|.. +.|..+|.|
T Consensus 330 ~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~ 372 (468)
T PF10300_consen 330 RLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRK 372 (468)
T ss_pred HHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHH
Confidence 999863 34555555555543 345666 677777653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=2.4 Score=40.39 Aligned_cols=189 Identities=12% Similarity=0.025 Sum_probs=116.3
Q ss_pred ccccCCCCHHHHHHHHHHHHhC--CC----CCcHHH-----HHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE--GL----TNNAVK-----MFDALSKDGLTHEALQLFAQIKDKGHMPDV----VAHTA 127 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~--~~----~p~~~~-----ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ 127 (257)
..+...|+++++..++...... .. .+.... +-..+...|+++.|...++...+.-...+. ...+.
T Consensus 417 ~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 496 (903)
T PRK04841 417 WLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSV 496 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 4455778999999988877542 11 111111 223456789999999999887653111121 24455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC--C-CC--CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh----CCCC--C-
Q 043311 128 VIEAYASAGQGKEALRVFMRMLASG--V-AP--NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG----KGMR--P- 195 (257)
Q Consensus 128 li~~~~~~~~~~~a~~~~~~m~~~g--~-~~--~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g~~--p- 195 (257)
+-..+...|++++|...+++..... . .+ -..++..+-..+... |+++.|...+++... .|.. +
T Consensus 497 lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~-----G~~~~A~~~~~~al~~~~~~~~~~~~~ 571 (903)
T PRK04841 497 LGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ-----GFLQAAYETQEKAFQLIEEQHLEQLPM 571 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHhccccccH
Confidence 5566778999999999998876431 1 11 123444455566664 448899888777553 2321 1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAK--GFVPD--EKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 196 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~--~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
....+..+-..+...|++++|...+++.... ...+. ...+..+-......|+.+.+...++
T Consensus 572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~ 636 (903)
T PRK04841 572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLN 636 (903)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2233445556677789999999999887653 12222 2333334456778898888876654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=94.42 E-value=1.5 Score=35.70 Aligned_cols=168 Identities=14% Similarity=0.168 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHH
Q 043311 70 DPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDK----GHMPD-VVAHTAVIEAYASAGQGKEALRV 144 (257)
Q Consensus 70 ~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~~~~~~a~~~ 144 (257)
+++.|..+|...- ..|...|++++|.+.|....+. +-..+ ...|.....+|.+. ++++|...
T Consensus 30 ~~e~Aa~~y~~Aa------------~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~ 96 (282)
T PF14938_consen 30 DYEEAADLYEKAA------------NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIEC 96 (282)
T ss_dssp HHHHHHHHHHHHH------------HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHH
T ss_pred CHHHHHHHHHHHH------------HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHH
Confidence 5555555555443 3444556666665555544211 11111 12334444444333 66666666
Q ss_pred HHHHHH----CCCCCC--HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHHcCC
Q 043311 145 FMRMLA----SGVAPN--AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG----KGMRPN--AGTYTAVFEAFVRAQK 212 (257)
Q Consensus 145 ~~~m~~----~g~~~~--~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g~~p~--~~~~~~li~~~~~~~~ 212 (257)
+++... .| .|+ ..++..+-..|... .|.++.|.+.|+.-.+ .| .+. ...+.-+...+++.|+
T Consensus 97 ~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~----~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 97 YEKAIEIYREAG-RFSQAAKCLKELAEIYEEQ----LGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp HHHHHHHHHHCT--HHHHHHHHHHHHHHHCCT----T--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCC
Confidence 655442 22 111 23444444555552 0347888887776542 23 111 2346777788999999
Q ss_pred HHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHhhcCCchhhHHhhhc
Q 043311 213 VDEARGLLQQMKAKGFV-----PDEK-AVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 213 ~~~a~~~~~~m~~~g~~-----p~~~-t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+++|.++|++....-.. .+.. .|...+-.+...|+.-.|.+.|+
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~ 220 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALE 220 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999998865322 2222 23333446667788888877765
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.15 Score=31.36 Aligned_cols=63 Identities=19% Similarity=0.161 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 043311 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQ-KVDEARGLLQQMKA 225 (257)
Q Consensus 156 ~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~ 225 (257)
+..+|..+-..+.. .|++++|...|+...+. .| +...|..+-.+|.+.| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~-----~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQ-----QGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45566666667777 44478888877776653 23 4455666667777777 67777777776654
|
... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.29 E-value=2 Score=35.26 Aligned_cols=47 Identities=17% Similarity=0.429 Sum_probs=26.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHH
Q 043311 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188 (257)
Q Consensus 137 ~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m 188 (257)
+.+++..++..=.+.|+-||.+|++.+|+.+.+.++ +.+|.++.-.|
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n-----~~~aa~vvt~~ 161 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKEN-----YKDAASVVTEV 161 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhccc-----HHHHHHHHHHH
Confidence 355666666666666666666666666666666333 55555554443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.18 E-value=1.6 Score=35.33 Aligned_cols=98 Identities=18% Similarity=0.217 Sum_probs=44.2
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC
Q 043311 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN-AGTYTAVFEAFVRAQ 211 (257)
Q Consensus 133 ~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~ 211 (257)
.+.+++++|+..|.+-++.. +-|.+-|..--.+|.+.|. ++.|++=-+.-.. +.|. ..+|..|=.+|...|
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~-----~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGE-----YEDAVKDCESALS--IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcc-----hHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccC
Confidence 44455555555555555431 2344555555555555332 3333322221111 1121 134555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043311 212 KVDEARGLLQQMKAKGFVPDEKAVKEALI 240 (257)
Q Consensus 212 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 240 (257)
++.+|.+.|++.++ +.|+-.+|-.=|.
T Consensus 164 k~~~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 164 KYEEAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred cHHHHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 55555555555443 4455555444433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.9 Score=41.11 Aligned_cols=134 Identities=12% Similarity=0.031 Sum_probs=93.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhccCCcchhH
Q 043311 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP-NAYTYAVLIKGLAAAADGNAKIL 178 (257)
Q Consensus 100 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~t~~~ll~~~~~~~~~~~~~~ 178 (257)
.++++++.+.|+.-.+-. .....+|-..=.+..+.++++.|.+-|..-..- .| +...||++-.+|.+.+. -
T Consensus 498 ~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~-----k 569 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKK-----K 569 (777)
T ss_pred chhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhh-----h
Confidence 466666666666443321 124556777777777888999999999887763 44 45789999999999444 8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHh
Q 043311 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG-FVPDEKAVKEALIDK 242 (257)
Q Consensus 179 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~ 242 (257)
.+|...+.+-.+.. .-+...|..-+-...+.|.+++|.+.+.++.+.. -.-|......++...
T Consensus 570 ~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 570 KRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 89999999888765 3355566667777789999999999999987642 122544555555443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.11 E-value=5.6 Score=37.99 Aligned_cols=102 Identities=16% Similarity=0.153 Sum_probs=72.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-----------------------CCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-----------------------TNNAV-KMFDALSKDGLTHEALQLFAQIKDKGH 118 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-----------------------~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~ 118 (257)
..+..++-+++|..+|+...-.+. .|..+ .+-.+-.+.|.+.+|.+-|-. .
T Consensus 1056 ~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik--a--- 1130 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK--A--- 1130 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh--c---
Confidence 567788889999988876543211 12222 366677778888888775533 2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 119 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
-|+..|.-+|+...+.|.|++-..++.-.+++.-+|.+. +.+|-+|++.+.
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNR 1181 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhch
Confidence 378899999999999999999988886656665566655 467778888554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.078 Score=33.64 Aligned_cols=58 Identities=14% Similarity=0.075 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 199 TYTAVFEAFVRAQKVDEARGLLQQMKAK----GF-VPD-EKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 199 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~-~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+|+.+-..|...|++++|+..|++..+. |- .|+ ..++..+-..+...|+.+.|.++|+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4455555555555666555555555432 10 111 3344444445555666655555554
|
... |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=1.8 Score=31.70 Aligned_cols=103 Identities=15% Similarity=0.003 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHH
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA-YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 201 (257)
...-.+=.-+...|++++|..+|+-+... .|.. .-|-.|=-.|-. .|++++|...|........ -|...+-
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~-----~g~~~~AI~aY~~A~~L~~-ddp~~~~ 107 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQA-----QKHWGEAIYAYGRAAQIKI-DAPQAPW 107 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHhcCC-CCchHHH
Confidence 33444445567889999999999999875 4444 444444444455 4559999999998876543 3667777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHH
Q 043311 202 AVFEAFVRAQKVDEARGLLQQMKAK-GFVPDEK 233 (257)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~ 233 (257)
.+=.++...|+.+.|.+.|+..... +-.|...
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~ 140 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRICGEVSEHQ 140 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhccChhHH
Confidence 7888999999999999999988876 4444433
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=2.3 Score=34.20 Aligned_cols=87 Identities=14% Similarity=0.085 Sum_probs=54.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcc
Q 043311 98 SKDGLTHEALQLFAQIKDKGHMPDV----VAHTAVIEAYASAGQGKEALRVFMRMLASG--VAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 98 ~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~t~~~ll~~~~~~~ 171 (257)
.+.|++++|...|+.+.+.- |+. ..+--+-.+|...|++++|...|+.+.+.- -......+-.+...+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 45678888888888887642 332 355566677778888888888888887541 1112233333344455533
Q ss_pred CCcchhHHHHHHHHHHHHhC
Q 043311 172 DGNAKILGDAQKYLMEMVGK 191 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~ 191 (257)
..+.|..+|+.+.+.
T Consensus 232 -----~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 232 -----DTAKAKAVYQQVIKK 246 (263)
T ss_pred -----CHHHHHHHHHHHHHH
Confidence 388888888877653
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.76 Score=28.08 Aligned_cols=63 Identities=17% Similarity=0.133 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
..+|..+=..+...|++++|...|++..+.+ +-+...|..+-.++...|+ .+++|.+.++...
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~----~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGK----DYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTT----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCc----cHHHHHHHHHHHH
Confidence 3445555555666666666666666655542 2244455555555555220 3566665555543
|
... |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.75 E-value=1.8 Score=30.92 Aligned_cols=88 Identities=17% Similarity=0.093 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHH
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTA 202 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 202 (257)
.-...+|..+.+.+..+....+++.+...|. .+...++.++..|++... +...+.+.. ..+.....-
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~------~~ll~~l~~------~~~~yd~~~ 74 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP------QKEIERLDN------KSNHYDIEK 74 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH------HHHHHHHHh------ccccCCHHH
Confidence 3445788888888999999999999998874 688899999999998422 333344432 123444555
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 043311 203 VFEAFVRAQKVDEARGLLQQM 223 (257)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~m 223 (257)
+++.|-+.+.++++..++.++
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHhh
Confidence 777777777777777777775
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.74 E-value=1.6 Score=35.36 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCH
Q 043311 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA-----KGFVPDE 232 (257)
Q Consensus 158 ~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~ 232 (257)
.++..++..+.. +++.+.+.+.++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|..
T Consensus 154 ~~l~~lae~~~~-----~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~ 227 (280)
T COG3629 154 KALTKLAEALIA-----CGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAP 227 (280)
T ss_pred HHHHHHHHHHHh-----cccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccH
Confidence 355666666766 445788888888877642 34777888888888888888888888887764 4888887
Q ss_pred HHHHHHHHH
Q 043311 233 KAVKEALID 241 (257)
Q Consensus 233 ~t~~~ll~~ 241 (257)
.+.......
T Consensus 228 ~~~~~y~~~ 236 (280)
T COG3629 228 ELRALYEEI 236 (280)
T ss_pred HHHHHHHHH
Confidence 777666665
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=93.70 E-value=2.5 Score=34.33 Aligned_cols=181 Identities=15% Similarity=0.127 Sum_probs=106.5
Q ss_pred ccccCCCCHHHHHHHHHHHHhCC--CC-Cc-HH----HHHHHHHhcCChHHHHHHHHHHHh----CCCCCC--HHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEG--LT-NN-AV----KMFDALSKDGLTHEALQLFAQIKD----KGHMPD--VVAHTAV 128 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~--~~-p~-~~----~ll~~~~~~~~~~~a~~~~~~m~~----~g~~p~--~~~~~~l 128 (257)
..+...|+++.|.+.|......- .. +. .. ....+| +..++++|.+.|+...+ .|- |+ ...+..+
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~-~~~aA~~~~~l 120 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGR-FSQAAKCLKEL 120 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT--HHHHHHHHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 55667889999988888776421 11 11 11 133344 44488888888776643 232 22 3356666
Q ss_pred HHHHHhc-CChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCC-----CCH
Q 043311 129 IEAYASA-GQGKEALRVFMRMLAS----GVA-PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR-----PNA 197 (257)
Q Consensus 129 i~~~~~~-~~~~~a~~~~~~m~~~----g~~-~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~-----p~~ 197 (257)
=..|... |++++|.+.|++-... |.. --..++.-+...+.+ .|++++|.++|++....-.. .+.
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~-----l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR-----LGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 6777777 8999999999876532 311 113555667777788 44599999999998754222 222
Q ss_pred H-HHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHhhcCCchhhH
Q 043311 198 G-TYTAVFEAFVRAQKVDEARGLLQQMKAK--GFVPD--EKAVKEALIDKRGQGFRGVI 251 (257)
Q Consensus 198 ~-~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~--~~t~~~ll~~~~~~g~~~~~ 251 (257)
. .|-..+-.+...|+...|.+.+++.... ++..+ ......||.+| ..|+.+..
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f 253 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAF 253 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHH
Confidence 2 2333444667789999999999998754 44333 34445555555 44444443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.66 E-value=1.5 Score=38.79 Aligned_cols=149 Identities=15% Similarity=0.177 Sum_probs=92.9
Q ss_pred CHHHHHHHHHHHHhCCCCCcH-H--HHHHHHHhcCChHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043311 70 DPRNLQEIFHKMRTEGLTNNA-V--KMFDALSKDGLTHEALQLFA--------QIKDKGHMPDVVAHTAVIEAYASAGQG 138 (257)
Q Consensus 70 ~~~~a~~~~~~m~~~~~~p~~-~--~ll~~~~~~~~~~~a~~~~~--------~m~~~g~~p~~~~~~~li~~~~~~~~~ 138 (257)
....+..++....+..-.-.. . .++......|+++.|.+++. .+.+.+..|-++ ..+...+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCC
Confidence 455566666555543211111 1 35566677899999998888 555545555444 4556667777776
Q ss_pred HHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 043311 139 KEALRVFMRMLAS--GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216 (257)
Q Consensus 139 ~~a~~~~~~m~~~--g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 216 (257)
+.|-+++++-.+. ...+......+++.-.+...-. .|..++|..+++++.+. -++|..+..-++.+|++. +.+.|
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr-~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka 510 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR-HGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKA 510 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh-cCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHH
Confidence 7777777665532 2233445555555544433221 36688899999998874 356888888888888887 46777
Q ss_pred HHHHHHH
Q 043311 217 RGLLQQM 223 (257)
Q Consensus 217 ~~~~~~m 223 (257)
..+-..+
T Consensus 511 ~~l~k~L 517 (652)
T KOG2376|consen 511 ESLSKKL 517 (652)
T ss_pred HHHhhcC
Confidence 7776554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=93.64 E-value=3.6 Score=34.17 Aligned_cols=137 Identities=9% Similarity=-0.020 Sum_probs=81.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchh
Q 043311 100 DGLTHEALQLFAQIKDKGHMPDV-VAHTAVIEAYASAG-QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI 177 (257)
Q Consensus 100 ~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~ 177 (257)
.+..++|+.+.++..+. .|+. .+|+.-=.++.+.| ++++++..++++.+.+-+ +..+|+..-..+.+.+. ..
T Consensus 50 ~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~---~~ 123 (320)
T PLN02789 50 DERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGP---DA 123 (320)
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCc---hh
Confidence 45666777777777663 3433 34554444455555 568888888887766433 44556654444444322 11
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 043311 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244 (257)
Q Consensus 178 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 244 (257)
.+.+..+++.+.+.. +-+...|+-.--.+...|+++++++.++++.+.+.. |...|+.....+.+
T Consensus 124 ~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~ 188 (320)
T PLN02789 124 ANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITR 188 (320)
T ss_pred hHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHh
Confidence 355666776666532 225667777667777778888888888888877654 33455554444433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=93.58 E-value=3.7 Score=36.59 Aligned_cols=122 Identities=13% Similarity=0.040 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcC--------ChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhccC
Q 043311 103 THEALQLFAQIKDKGHMPDV-VAHTAVIEAYASAG--------QGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 103 ~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~-g~~~~~~t~~~ll~~~~~~~~ 172 (257)
...|..+|++..+. .|+- ..|..+-.++.... ++..+.+........ ....+...|.++--....
T Consensus 358 ~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~--- 432 (517)
T PRK10153 358 LNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALV--- 432 (517)
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh---
Confidence 56789999988874 4653 34444333332221 223344444433222 234455777777555555
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 235 (257)
.|++++|...++..... .|+...|..+-..+...|+.++|.+.+++.... .|...||
T Consensus 433 --~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~ 489 (517)
T PRK10153 433 --KGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTL 489 (517)
T ss_pred --cCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchH
Confidence 34599999999998875 478889999999999999999999999998764 3444444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.55 E-value=1.1 Score=33.73 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=43.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPD--VVAHTAVIEAYASAGQGKEALRVFMRMLA 150 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 150 (257)
.+-..|.+.|+.+.|.+.|..+.+....+. +..+-.+|+...-.+++..+.....+...
T Consensus 41 ~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 41 DLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 367778888888888888888887755554 34567778888888888887777766554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.37 E-value=1.3 Score=40.96 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=31.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQ 112 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~ 112 (257)
....+.|.+++|..+|++.++.++ |=..|-..|.|++|.++-+.
T Consensus 808 vLAieLgMlEeA~~lYr~ckR~DL------lNKlyQs~g~w~eA~eiAE~ 851 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKRYDL------LNKLYQSQGMWSEAFEIAET 851 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHH------HHHHHHhcccHHHHHHHHhh
Confidence 666789999999999999887532 22344556777777776543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.31 E-value=4.8 Score=37.55 Aligned_cols=141 Identities=20% Similarity=0.110 Sum_probs=73.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhH
Q 043311 99 KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178 (257)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 178 (257)
..|-+++|..+|.+-+. |..|=..|-..|+|++|+++-+.=-+-.++- ||-.-...+...+| .
T Consensus 812 eLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~---Tyy~yA~~Lear~D-----i 874 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRN---TYYNYAKYLEARRD-----I 874 (1416)
T ss_pred HHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehhh---hHHHHHHHHHhhcc-----H
Confidence 34555666666655544 3344455666677777777665433333333 33333333333333 5
Q ss_pred HHHHHHHHHHH-----------hC--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------------
Q 043311 179 GDAQKYLMEMV-----------GK--------GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK------------- 226 (257)
Q Consensus 179 ~~a~~~~~~m~-----------~~--------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------------- 226 (257)
+.|.+.|++-. +. .-.-|...|.-.-.-.-..|++|.|+.+|....+.
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~ 954 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKT 954 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCc
Confidence 55555444321 11 00122233333333333457777777777665431
Q ss_pred -------CCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 227 -------GFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 227 -------g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
.-.-|......+-+.|...|++.+|..+|-
T Consensus 955 ~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 955 DKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred hHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 012356667778888888888888887774
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.31 E-value=1.1 Score=27.61 Aligned_cols=54 Identities=19% Similarity=0.130 Sum_probs=26.4
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh
Q 043311 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 131 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
.|.+.+++++|.++++.+...+ +.+...|...-..+.. .|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~-----~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQ-----LGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHH-----hccHHHHHHHHHHHHH
Confidence 4455555555555555555442 2233444444444444 2225555555555543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.94 E-value=3.9 Score=32.49 Aligned_cols=49 Identities=6% Similarity=-0.009 Sum_probs=28.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHhhcCCchhhHHh
Q 043311 205 EAFVRAQKVDEARGLLQQMKAK--GFVPDEKAVKEALIDKRGQGFRGVINI 253 (257)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~~~~ 253 (257)
+-|.+.|.+..|..-+++|.+. .-.-....+..+..+|..-|..+.|++
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~ 225 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKK 225 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHH
Confidence 4456667777777777777765 111223344455556666666665554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=92.92 E-value=3.1 Score=35.92 Aligned_cols=58 Identities=21% Similarity=0.157 Sum_probs=49.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDV----VAHTAVIEAYASAGQGKEALRVFMRMLAS 151 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 151 (257)
.+-.+|.+.|++++|...|+...+. .|+. .+|..+-.+|.+.|+.++|...|++..+.
T Consensus 80 NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 80 NLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4777889999999999999997774 4664 45899999999999999999999998864
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=92.83 E-value=2.9 Score=33.88 Aligned_cols=116 Identities=11% Similarity=0.080 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHcCCHHH
Q 043311 138 GKEALRVFMRMLA-SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV-GKGMRPNAGTYTAVFEAFVRAQKVDE 215 (257)
Q Consensus 138 ~~~a~~~~~~m~~-~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~~~~~~ 215 (257)
+.+|+.+|+...- ..+--|..+...+++......+. ....-.++.+-+. ..|-.++..+...+|..+++.++|..
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~---~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENT---KLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhcccc---chhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 4455555552221 22445666666666655442221 1333333333333 23455666666677777777777777
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 216 ARGLLQQMKAK-GFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 216 a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
..++++.-... +-.-|..-|..+|......|+.+.+.++.+
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 77776665544 445566677777777777777766666543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.74 E-value=5.6 Score=35.20 Aligned_cols=140 Identities=14% Similarity=0.095 Sum_probs=90.2
Q ss_pred HHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHH
Q 043311 104 HEALQLFAQI-KDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQ 182 (257)
Q Consensus 104 ~~a~~~~~~m-~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~ 182 (257)
....++|-++ .+.+.++|..++..|=-.|--.|++++|.+.|+..++.. +-|...||-|=-.++. +.+-++|.
T Consensus 411 ~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN-----~~~s~EAI 484 (579)
T KOG1125|consen 411 AHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLAN-----GNRSEEAI 484 (579)
T ss_pred HHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcC-----CcccHHHH
Confidence 3445555554 345655677777777777888888888888888887742 3356777777666666 55578888
Q ss_pred HHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHH---C------CCCCCHHHHHHHHHHhhcCCchhhH
Q 043311 183 KYLMEMVGKGMRPNAG--TYTAVFEAFVRAQKVDEARGLLQQMKA---K------GFVPDEKAVKEALIDKRGQGFRGVI 251 (257)
Q Consensus 183 ~~~~~m~~~g~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~---~------g~~p~~~t~~~ll~~~~~~g~~~~~ 251 (257)
+.|++..+ +.|+-+ =||.-| +|...|.+++|.+.|-+.+. . +..++...|.+|=.++...+..+.+
T Consensus 485 sAY~rALq--LqP~yVR~RyNlgI-S~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 485 SAYNRALQ--LQPGYVRVRYNLGI-SCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred HHHHHHHh--cCCCeeeeehhhhh-hhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 88888776 456543 366444 46777888888887665542 1 2233455666666666555555533
Q ss_pred H
Q 043311 252 N 252 (257)
Q Consensus 252 ~ 252 (257)
.
T Consensus 562 ~ 562 (579)
T KOG1125|consen 562 Q 562 (579)
T ss_pred H
Confidence 3
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=3.3 Score=35.76 Aligned_cols=87 Identities=6% Similarity=-0.085 Sum_probs=58.9
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCc-----HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhc
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNN-----AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE--AYASA 135 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~--~~~~~ 135 (257)
..+.+.|++++|...|+...+..-... ...+-.+|.+.|+.++|.+.++...+.+ ...|..+.. .+..-
T Consensus 83 ~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels----n~~f~~i~~DpdL~pl 158 (453)
T PLN03098 83 LSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY----NLKFSTILNDPDLAPF 158 (453)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----chhHHHHHhCcchhhh
Confidence 788899999999999999887543322 3468889999999999999999998841 112221111 01112
Q ss_pred CChHHHHHHHHHHHHCCC
Q 043311 136 GQGKEALRVFMRMLASGV 153 (257)
Q Consensus 136 ~~~~~a~~~~~~m~~~g~ 153 (257)
.+.++..++++...+.|.
T Consensus 159 R~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 159 RASPEFKELQEEARKGGE 176 (453)
T ss_pred cccHHHHHHHHHHHHhCC
Confidence 233466677777777664
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.74 E-value=1.5 Score=35.96 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHHHHHhCC---CCCcH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043311 67 EPTDPRNLQEIFHKMRTEG---LTNNA--VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEA 141 (257)
Q Consensus 67 ~~~~~~~a~~~~~~m~~~~---~~p~~--~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 141 (257)
+..+++.+...+-.++... ..|++ .++++.|.+- +++.++.+...=.+.|+-||.++++.+|+.+.+.+++.+|
T Consensus 76 ~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky-~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~a 154 (418)
T KOG4570|consen 76 SREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKY-DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDA 154 (418)
T ss_pred cccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHcc-ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHH
Confidence 3566777777766666532 22332 2567776654 5778999998889999999999999999999999999999
Q ss_pred HHHHHHHHHC
Q 043311 142 LRVFMRMLAS 151 (257)
Q Consensus 142 ~~~~~~m~~~ 151 (257)
.++...|...
T Consensus 155 a~vvt~~~~q 164 (418)
T KOG4570|consen 155 ASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHH
Confidence 9998888754
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.69 E-value=1.4 Score=31.72 Aligned_cols=75 Identities=12% Similarity=0.022 Sum_probs=54.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhC-CCCCcHH----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE-GLTNNAV----KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 137 (257)
....+.|++++|.+.|+.+... ...+-.. .++.+|.+.++++.|...++.+.+....--..-|--.+.+++.-..
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 4556789999999999999974 2233222 4899999999999999999998875432223556666666655443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.52 E-value=7.4 Score=34.71 Aligned_cols=129 Identities=15% Similarity=0.065 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCC
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFM--------RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~--------~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~ 193 (257)
..+--.++......|+++.|.+++. .+.+.+-.|-.+.+...+.--.+.++.....++.|...|..-....
T Consensus 376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s- 454 (652)
T KOG2376|consen 376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS- 454 (652)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc-
Confidence 4566677778888999999999999 6666555555555444443333333322333455555554432111
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHh
Q 043311 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINI 253 (257)
Q Consensus 194 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 253 (257)
.--..++--+..--.+.|+-++|..+++++.+.. .+|..+...++.+|++. +.+.++.
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~ 512 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAES 512 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHH
Confidence 1111223333333456799999999999999864 57888888888888764 3444443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=92.46 E-value=1.6 Score=29.07 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 043311 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
.-++.+-++.+....+.|+.....+.+++|-+.+| +..|..+|+..+
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND-----~alAVR~lE~vK 69 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVND-----FALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhh-----HHHHHHHHHHHH
Confidence 34555555555555566666666666666666444 566666665554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.26 E-value=5.7 Score=36.42 Aligned_cols=147 Identities=17% Similarity=0.122 Sum_probs=95.7
Q ss_pred CCCCCcHHHHHHHHHhcCChHHH----------HHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 043311 84 EGLTNNAVKMFDALSKDGLTHEA----------LQLFAQIKD-KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152 (257)
Q Consensus 84 ~~~~p~~~~ll~~~~~~~~~~~a----------~~~~~~m~~-~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 152 (257)
.|..|+..+.-+.|.+....+.. ++++..+.. .|..-..-+.+-.+.-+...|+..+|.++-.+.+
T Consensus 635 ~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk--- 711 (829)
T KOG2280|consen 635 EGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK--- 711 (829)
T ss_pred cccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC---
Confidence 35556655566666665442221 222222222 2333444455566667888899999987776664
Q ss_pred CCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 043311 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232 (257)
Q Consensus 153 ~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 232 (257)
-||-..|-.=+.+++..++ |++-+++-+.+. ...=|..++..|.+.|+.++|.+++-+. .+..
T Consensus 712 -ipdKr~~wLk~~aLa~~~k-----weeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv-----~~l~ 774 (829)
T KOG2280|consen 712 -IPDKRLWWLKLTALADIKK-----WEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRV-----GGLQ 774 (829)
T ss_pred -CcchhhHHHHHHHHHhhhh-----HHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhcc-----CChH
Confidence 7899999999999999444 766665544432 2566788899999999999999998873 2222
Q ss_pred HHHHHHHHHhhcCCchhhHHhh
Q 043311 233 KAVKEALIDKRGQGFRGVINIL 254 (257)
Q Consensus 233 ~t~~~ll~~~~~~g~~~~~~~l 254 (257)
-...+|.+.|++..|.++
T Consensus 775 ----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 775 ----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred ----HHHHHHHHhccHHHHHHH
Confidence 456677777777666543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.86 Score=28.69 Aligned_cols=61 Identities=21% Similarity=0.256 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhccCCcchhHHHHHHHHHHHHh----CCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043311 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVG----KGM-RPN-AGTYTAVFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 159 t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g~-~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 224 (257)
+|+.+-..|... |++++|...|++..+ .|- .|+ ..+++.+-..|...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYREL-----GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHT-----T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555555552 225555555554432 110 111 2345555666666677777776666543
|
... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.16 E-value=3.9 Score=30.63 Aligned_cols=132 Identities=17% Similarity=0.176 Sum_probs=86.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcch
Q 043311 98 SKDGLTHEALQLFAQIKDKGHMPDVVA-HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176 (257)
Q Consensus 98 ~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~ 176 (257)
.+.+..++|+.-|.++.+.|...-.+. ---+-......|+...|...|++.-.-.-.|-..-=..-+++-.-.-| .|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD--~g 146 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD--NG 146 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc--cc
Confidence 567888999999999988766433322 222333456788999999999998765444443322233333222222 55
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 043311 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231 (257)
Q Consensus 177 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 231 (257)
.++.+..-.+-+...|-+.-...-.+|=-+-.+.|++.+|...|..+.+.-..|-
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 5888887777776554444444556777777889999999999999887654453
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=92.07 E-value=8.9 Score=34.60 Aligned_cols=174 Identities=12% Similarity=0.077 Sum_probs=107.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHHH----HHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDA----LSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQ 137 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~~----~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~ 137 (257)
..+...+++++|.+.|...... .||...+++- =.+.++++...+......+. .| ....|-.+..++.-.|+
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHH
Confidence 3445566777777777766653 3443332221 23445555555555555443 23 34578888889999999
Q ss_pred hHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhccC-CcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 043311 138 GKEALRVFMRMLASG-VAPNAYTYAVLIKGLAAAAD-GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g-~~~~~~t~~~ll~~~~~~~~-~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 215 (257)
...|..++++..+.- ..|+...|--.....-+..- .+.|..+.|.+.+..-+.. +.-....-.+--.-+.+.+++++
T Consensus 159 y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEe 237 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEE 237 (700)
T ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHh
Confidence 999999999988764 35777666543332222100 1144467777766555432 11122223344456678899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 043311 216 ARGLLQQMKAKGFVPDEKAVKEALIDKR 243 (257)
Q Consensus 216 a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 243 (257)
|..++..+... .||..-|...+..+.
T Consensus 238 A~~~y~~Ll~r--nPdn~~Yy~~l~~~l 263 (700)
T KOG1156|consen 238 AVKVYRRLLER--NPDNLDYYEGLEKAL 263 (700)
T ss_pred HHHHHHHHHhh--CchhHHHHHHHHHHH
Confidence 99999999987 488888887777665
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.91 E-value=2.6 Score=34.11 Aligned_cols=73 Identities=19% Similarity=0.260 Sum_probs=49.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA-----SGVAPNAYTYAVLIKG 166 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~t~~~ll~~ 166 (257)
+...+...|+.+.+.+.++++.+. -+-+...|..+|.+|.+.|+...|...|+++.+ -|+.|...+.....+.
T Consensus 159 lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 159 LAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Confidence 455556667777777777776664 234666777777777777777777777777665 3677777666666665
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=91.78 E-value=2.8 Score=28.22 Aligned_cols=44 Identities=11% Similarity=0.146 Sum_probs=19.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
..+-++.+....+.|+.....+.+++|.+.+| +..|.++|+.++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND-----~a~AVR~lE~iK 72 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVND-----FALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT------HHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhh-----HHHHHHHHHHHH
Confidence 34444444444555555555555555555333 555555555444
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=5.5 Score=31.61 Aligned_cols=158 Identities=13% Similarity=0.107 Sum_probs=91.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH---TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
--..+.+.|++++|.+.|+.+...-..+ ...- -.+..++.+.+++++|...|++..+..-.-...-|.-.+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3445577899999999999998853222 2222 34567789999999999999999876433233455555555442
Q ss_pred --cc-------------CCcchhHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 043311 170 --AA-------------DGNAKILGDAQKYLMEMVGK----GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230 (257)
Q Consensus 170 --~~-------------~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 230 (257)
.+ +.+......|...|+.+.+. ...|+....-..++--.....+..|.-.+++ ....+
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~---~~y~A 193 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKR---GAYVA 193 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CchHH
Confidence 11 11233345666677776643 2222222233333322222333333333332 23445
Q ss_pred CHHHHHHHHHHhhcCCchhhHHhh
Q 043311 231 DEKAVKEALIDKRGQGFRGVINIL 254 (257)
Q Consensus 231 ~~~t~~~ll~~~~~~g~~~~~~~l 254 (257)
-...+..++.-|-.....+.|.-+
T Consensus 194 A~~r~~~v~~~Yp~t~~~~eal~~ 217 (243)
T PRK10866 194 VVNRVEQMLRDYPDTQATRDALPL 217 (243)
T ss_pred HHHHHHHHHHHCCCCchHHHHHHH
Confidence 667778888888777777666443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.71 E-value=4.7 Score=30.63 Aligned_cols=127 Identities=17% Similarity=0.177 Sum_probs=84.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHH
Q 043311 90 AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG---VAPNAYTYAVLIKG 166 (257)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~~~~~t~~~ll~~ 166 (257)
...|-.++...|+..+|...|.+-..--+--|....-.+-++....++...|..+++.+.+.+ -.|| +.-.+-+.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~ 169 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHLLFART 169 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chHHHHHH
Confidence 335788888889999999999888776566677778888888888889999999998887653 3333 34445566
Q ss_pred HHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHHHHHH
Q 043311 167 LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR----GLLQQMKA 225 (257)
Q Consensus 167 ~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~----~~~~~m~~ 225 (257)
+.. .|..++|+.-|+...+. .|+...-.---....+.|+.+++. ++++...+
T Consensus 170 laa-----~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 170 LAA-----QGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred HHh-----cCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 666 44488888888877764 444443222223345666555444 34444443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=91.60 E-value=2.3 Score=28.35 Aligned_cols=65 Identities=11% Similarity=0.112 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043311 102 LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167 (257)
Q Consensus 102 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~ 167 (257)
+.-++.+-++.+......|++.+..+.+++|.+-+|+..|.++|+-.+.+ +..+...|..+++-.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqei 86 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEI 86 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHH
Confidence 34456667777777788999999999999999999999999999988744 222455777777644
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=91.56 E-value=4.2 Score=29.82 Aligned_cols=90 Identities=14% Similarity=-0.030 Sum_probs=71.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~ 171 (257)
+-..+...|++++|..+|+.+... .| +..-|-.|=-+|-..|++++|...|......+. -|...+-.+-..+...|
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcC
Confidence 444557899999999999999874 34 345566666777788999999999999888763 57788888888888855
Q ss_pred CCcchhHHHHHHHHHHHHh
Q 043311 172 DGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~ 190 (257)
+ .+.|.+.|+....
T Consensus 118 ~-----~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 N-----VCYAIKALKAVVR 131 (157)
T ss_pred C-----HHHHHHHHHHHHH
Confidence 5 9999999987654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.54 E-value=6.5 Score=31.92 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=81.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC-HH
Q 043311 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN-AG 198 (257)
Q Consensus 120 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~ 198 (257)
-|...|-.|=..|...|+...|..-|.+-.+- -.+|...+..+-.++....+ ...-.++..+|++.... .|+ ..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~--~~~ta~a~~ll~~al~~--D~~~ir 228 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAG--QQMTAKARALLRQALAL--DPANIR 228 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcC--CcccHHHHHHHHHHHhc--CCccHH
Confidence 36788999999999999999999999888765 24567777777787777666 44467899999998864 344 44
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 043311 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKG 227 (257)
Q Consensus 199 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g 227 (257)
+-..|-..+...|++.+|...|+.|.+..
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 45555577888999999999999999873
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=91.21 E-value=1.5 Score=29.51 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043311 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167 (257)
Q Consensus 104 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~ 167 (257)
-+..+-++.+....+.|++.+..+.+++|.+.+|+..|.++|+-.+.+ +......|..+++-.
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHH
Confidence 346666777777788999999999999999999999999999998854 222233777777744
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.16 E-value=6.3 Score=37.47 Aligned_cols=51 Identities=14% Similarity=0.046 Sum_probs=26.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 043311 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 133 ~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
-+.++...+..-|+.-.+.. +-|...|..+.++|.+ +|++..|.++|....
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~-----sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPE-----SGRYSHALKVFTKAS 623 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHh-----cCceehHHHhhhhhH
Confidence 33444555555555444432 2255555566666665 444666666665443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.04 E-value=0.77 Score=24.21 Aligned_cols=26 Identities=8% Similarity=0.060 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043311 199 TYTAVFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 199 ~~~~li~~~~~~~~~~~a~~~~~~m~ 224 (257)
+|+.|-..|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888999999999999998854
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=91.02 E-value=4.3 Score=28.93 Aligned_cols=129 Identities=10% Similarity=0.070 Sum_probs=60.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHH
Q 043311 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179 (257)
Q Consensus 100 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~ 179 (257)
.|.+++..++..+.... .+..-||=+|--...+-+=+-.+++++..-+- .|. ..+|++.
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi---------------s~C~NlK 73 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI---------------SKCGNLK 73 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G---------------GG-S-TH
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc---------------hhhcchH
Confidence 45566666666655543 34455555555555555545544554444321 111 1122244
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 180 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
.....+-.+ ..+...++..++..+..|+-|...+++.++.. +-++++.....+-.||.+-|+...+..++
T Consensus 74 rVi~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell 143 (161)
T PF09205_consen 74 RVIECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELL 143 (161)
T ss_dssp HHHHHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence 444433322 12455566666666777777776666666654 23566666666666777777666666654
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.87 E-value=7.1 Score=31.76 Aligned_cols=94 Identities=18% Similarity=0.168 Sum_probs=46.8
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCCcHHH----HHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHH
Q 043311 66 EEPTDPRNLQEIFHKMRTEGLTNNAVK----MFDALSKDGLTHEALQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 66 ~~~~~~~~a~~~~~~m~~~~~~p~~~~----ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~ 140 (257)
.+.+++++|+..|.+..+. .|+... =-.+|++.|..+.|++=.+.-.+ +.|+ ..+|..|=.+|...|++++
T Consensus 92 m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 3555666666666655553 222111 23355555655555554444333 2222 2355555555666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHH
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIK 165 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~ 165 (257)
|.+-|++-.+ +.|+..+|-.=++
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHH
Confidence 6666555443 4555555544443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.63 E-value=5.6 Score=29.87 Aligned_cols=61 Identities=20% Similarity=0.257 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT--YAVLIKGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t--~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
.+..+-.-|.+.|+.++|++.|.++......+.... +-.+|+.+...++ +..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d-----~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGD-----WSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHH
Confidence 456666666666666666666666666544433332 1234455555333 566555555544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=90.37 E-value=11 Score=32.64 Aligned_cols=146 Identities=16% Similarity=0.135 Sum_probs=72.0
Q ss_pred hcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCC
Q 043311 99 KDGLTHEALQLFAQIKDKGHM-PD----VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG 173 (257)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~ 173 (257)
+.++..++.++|...-+.... |. -..-+.+|++|..++ ++.....+..+.+. .| ...|-.+..+...-.
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~-- 91 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK-- 91 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH--
Confidence 456666666666666543111 11 222345566665544 44544455444433 11 223333333322111
Q ss_pred cchhHHHHHHHHHHHHhC--CCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHH
Q 043311 174 NAKILGDAQKYLMEMVGK--GMR------------PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK----GFVPDEKAV 235 (257)
Q Consensus 174 ~~~~~~~a~~~~~~m~~~--g~~------------p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~t~ 235 (257)
.+.+.+|.+.+..-.+. +-. +|...=+..+.+....|+++++..++.+|... ....|..+|
T Consensus 92 -~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 92 -QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred -hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 23355555554444332 211 12222245556666777777777777776643 344677777
Q ss_pred HHHHHHhhcCCchhhH
Q 043311 236 KEALIDKRGQGFRGVI 251 (257)
Q Consensus 236 ~~ll~~~~~~g~~~~~ 251 (257)
+.++-.++++-..+..
T Consensus 171 d~~vlmlsrSYfLEl~ 186 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELK 186 (549)
T ss_pred HHHHHHHhHHHHHHHH
Confidence 7766666555544443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=90.33 E-value=9.4 Score=31.72 Aligned_cols=196 Identities=12% Similarity=0.050 Sum_probs=113.4
Q ss_pred hhhcccCCCCCCcccccc---ccccCCC-CHHHHHHHHHHHHhCCCCCcHH-H-HHHHHHhcCC--hHHHHHHHHHHHhC
Q 043311 45 KYVNTKSKLPPPYDPFKK---VVDEEPT-DPRNLQEIFHKMRTEGLTNNAV-K-MFDALSKDGL--THEALQLFAQIKDK 116 (257)
Q Consensus 45 ~~~~~~~~~~p~~~~~~~---~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~-~-ll~~~~~~~~--~~~a~~~~~~m~~~ 116 (257)
....+.-.+.|+..+.-. .++...| ++++++..++.+.+........ . ---.+.+.|. .+++.++++.+.+.
T Consensus 58 ~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~ 137 (320)
T PLN02789 58 DLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL 137 (320)
T ss_pred HHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh
Confidence 334444444555444322 3444555 5788888888877754333211 1 1112233444 25667777777653
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC--CcchhHHHHHHHHHHHHhCCCC
Q 043311 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD--GNAKILGDAQKYLMEMVGKGMR 194 (257)
Q Consensus 117 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~--~~~~~~~~a~~~~~~m~~~g~~ 194 (257)
. .-|..+|+-.-.++.+.|+++++++.++++.+.+.. |...|+-....+.+.+. +.....+...++..+.... -+
T Consensus 138 d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-~P 214 (320)
T PLN02789 138 D-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-NP 214 (320)
T ss_pred C-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-CC
Confidence 2 235678888888888888888888888888877644 66677766655555322 0011234555555444432 12
Q ss_pred CCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 043311 195 PNAGTYTAVFEAFVRA----QKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244 (257)
Q Consensus 195 p~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 244 (257)
-|...|+-+-..+... ++..+|.+.+.+....+ ..+...+..|+..+..
T Consensus 215 ~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 215 RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 3556777777777663 33456777877766644 2356677777777764
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=89.62 E-value=7.8 Score=29.71 Aligned_cols=59 Identities=24% Similarity=0.292 Sum_probs=44.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGH-MP-DVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~-~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 151 (257)
.-..+...|++++|.+.|+.+...-. .| -....-.+..++.+.|+++.|...|++..+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556789999999999999987522 11 2345667788999999999999999998865
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=89.48 E-value=12 Score=31.73 Aligned_cols=163 Identities=13% Similarity=0.059 Sum_probs=99.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHM---PDVVAHTAVIEAYAS---AGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~---p~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~ 165 (257)
.++-+|....+++...++.+.+...... -...+-.-.--++.+ .|+.++|++++..+....-.++..||..+-+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4777889999999999999999886211 111211122334455 7899999999999776666788889988877
Q ss_pred HHHhc----cCCcchhHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHc-CCHHHHHHHH----HHHHHCCC---CC
Q 043311 166 GLAAA----ADGNAKILGDAQKYLMEMVGKGMRPNAGT---YTAVFEAFVRA-QKVDEARGLL----QQMKAKGF---VP 230 (257)
Q Consensus 166 ~~~~~----~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~-~~~~~a~~~~----~~m~~~g~---~p 230 (257)
.|-.. +..+....+.|...|.+--+ +.||..+ +-+|+...... ..-.+..++- ....+.|. ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 76432 12223446777777765433 3354433 23333322211 0111222222 22223443 45
Q ss_pred CHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 231 DEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 231 ~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
|---+.+++.++.-.|+.+++.+..+
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e 329 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAE 329 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 67778899999999999998887654
|
|
| >PRK10564 maltose regulon periplasmic protein; Provisional | Back alignment and domain information |
|---|
Probab=89.01 E-value=1.3 Score=35.90 Aligned_cols=47 Identities=17% Similarity=0.271 Sum_probs=38.6
Q ss_pred CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043311 193 MRPNAGT-YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239 (257)
Q Consensus 193 ~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 239 (257)
+.||..+ ||..|...++.||+++|+.+++|.++.|+.--..||..-+
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 4566654 7899999999999999999999999999887666765444
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=88.98 E-value=7 Score=28.28 Aligned_cols=77 Identities=10% Similarity=0.155 Sum_probs=39.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKG-----HMPDVVAHTAVIEAYASAGQ-GKEALRVFMRMLASGVAPNAYTYAVLIKG 166 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~t~~~ll~~ 166 (257)
++.-....++......+++.+..-. -..+-..|++++.+.++..- ---+..+|.-|++.+.+++..-|-.+|++
T Consensus 45 iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~ 124 (145)
T PF13762_consen 45 ILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKA 124 (145)
T ss_pred HHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3444444455555555555442110 01234456666666655444 33455555666655556666666666665
Q ss_pred HHh
Q 043311 167 LAA 169 (257)
Q Consensus 167 ~~~ 169 (257)
+.+
T Consensus 125 ~l~ 127 (145)
T PF13762_consen 125 ALR 127 (145)
T ss_pred HHc
Confidence 554
|
|
| >PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=88.19 E-value=2.8 Score=23.88 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=27.2
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043311 207 FVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241 (257)
Q Consensus 207 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 241 (257)
..+.|-++++..++++|.+.|+..+...|..++.-
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 45667777888888888888888888888777754
|
This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length. |
| >COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.94 E-value=3.4 Score=29.91 Aligned_cols=64 Identities=13% Similarity=0.249 Sum_probs=51.0
Q ss_pred HHHHHHHHhCCCCCcHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043311 75 QEIFHKMRTEGLTNNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG 138 (257)
Q Consensus 75 ~~~~~~m~~~~~~p~~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 138 (257)
.++...+.+.|++++.. .+++.+.+.+..-.|.++|+++.+.+...+..|--..++.+...|-+
T Consensus 6 ~~~~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 6 EDAIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 44566777788876654 69999999988889999999999988888877777777888888744
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=87.62 E-value=22 Score=32.31 Aligned_cols=158 Identities=16% Similarity=0.207 Sum_probs=100.9
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhC--C------------CCCCHHHHH--
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDK--G------------HMPDVVAHT-- 126 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g------------~~p~~~~~~-- 126 (257)
.......-.+.+..++..+.+.|+.+-..++...|-.-...+-..++.-.+... | -+|.+..|.
T Consensus 296 svl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y 375 (700)
T KOG1156|consen 296 SVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLY 375 (700)
T ss_pred HHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHH
Confidence 333444455556667777888888777666666665433333223332222211 1 145555444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043311 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNA-YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205 (257)
Q Consensus 127 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 205 (257)
.++..|-+.|+++.|..+++.-..+ .|+. .-|.+=-+.+...| .++.|..++++..+-+ .||...=.--..
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G-----~l~eAa~~l~ea~elD-~aDR~INsKcAK 447 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAG-----LLDEAAAWLDEAQELD-TADRAINSKCAK 447 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHhcc-chhHHHHHHHHH
Confidence 5677788899999999999988765 4443 45555557777744 4999999999887642 234333223344
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC
Q 043311 206 AFVRAQKVDEARGLLQQMKAKGF 228 (257)
Q Consensus 206 ~~~~~~~~~~a~~~~~~m~~~g~ 228 (257)
-..++++.++|.++.....+.|.
T Consensus 448 YmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 448 YMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHccccHHHHHHHHHhhhccc
Confidence 45678999999999999988875
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=87.56 E-value=8.8 Score=27.77 Aligned_cols=100 Identities=8% Similarity=0.100 Sum_probs=58.5
Q ss_pred HHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhccCCcchh-HHHHH
Q 043311 111 AQIKDKGHMPDV--VAHTAVIEAYASAGQGKEALRVFMRMLASG-----VAPNAYTYAVLIKGLAAAADGNAKI-LGDAQ 182 (257)
Q Consensus 111 ~~m~~~g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-----~~~~~~t~~~ll~~~~~~~~~~~~~-~~~a~ 182 (257)
..|++.+..+++ ...|+++.-.+..++......+++.+..-. -..+..+|.+++++..+ ... --.+.
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~Slsn-----SsSaK~~~~ 100 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSN-----SSSAKLTSL 100 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHcc-----ChHHHHHHH
Confidence 334445555554 346777777777777777777777774221 02344556667666644 221 23445
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 043311 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215 (257)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 215 (257)
.+|+-|++.+.+++..-|-.+|.++.+....+.
T Consensus 101 ~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 101 TLFNFLKKNDIEFTPSDYSCLIKAALRGYFHDS 133 (145)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCcc
Confidence 566666666666667777777776665544333
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.62 E-value=8.6 Score=30.80 Aligned_cols=89 Identities=17% Similarity=0.149 Sum_probs=46.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCC----CCCcHH-HHHHHHHhcCChHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEG----LTNNAV-KMFDALSKDGLTHEALQLFAQIKDK-GHMPD-VVAHTAVIEAYASA 135 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~-~~~~~~li~~~~~~ 135 (257)
.-+...|++..|...|....+.. ..|+.. =|-.++...|++++|-.+|..+.+. +-.|- ...+--|=....+.
T Consensus 149 ~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l 228 (262)
T COG1729 149 LDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL 228 (262)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence 34445566666666666666532 122222 1555666666666666666666543 11121 13333344445556
Q ss_pred CChHHHHHHHHHHHHC
Q 043311 136 GQGKEALRVFMRMLAS 151 (257)
Q Consensus 136 ~~~~~a~~~~~~m~~~ 151 (257)
|+.++|..+|++..+.
T Consensus 229 ~~~d~A~atl~qv~k~ 244 (262)
T COG1729 229 GNTDEACATLQQVIKR 244 (262)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 6666666666666543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.52 E-value=2.6 Score=22.47 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 197 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
..+++.|-..|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35678888888889999999998888764
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.50 E-value=3.8 Score=22.56 Aligned_cols=28 Identities=43% Similarity=0.463 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLAS 151 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 151 (257)
+|..+-.+|...|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455556666666666666666666654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.47 E-value=2.4 Score=23.40 Aligned_cols=28 Identities=32% Similarity=0.382 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 199 TYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 199 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
++..+-..|...|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5677889999999999999999999986
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.27 E-value=0.19 Score=36.07 Aligned_cols=85 Identities=12% Similarity=0.166 Sum_probs=53.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
++..+.+.+.+.....+++.+...+..-+....+.++..|++.++.++...+++.. +..-...+++.|.+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~--- 82 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEK--- 82 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHT---
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHh---
Confidence 66667777777777777777776665566777888888888887767776666511 11333456666666
Q ss_pred CcchhHHHHHHHHHHHH
Q 043311 173 GNAKILGDAQKYLMEMV 189 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~ 189 (257)
.|.++.+.-++..+.
T Consensus 83 --~~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 83 --HGLYEEAVYLYSKLG 97 (143)
T ss_dssp --TTSHHHHHHHHHCCT
T ss_pred --cchHHHHHHHHHHcc
Confidence 444666666665543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=86.07 E-value=2.3 Score=22.33 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 043311 125 HTAVIEAYASAGQGKEALRVFMRM 148 (257)
Q Consensus 125 ~~~li~~~~~~~~~~~a~~~~~~m 148 (257)
|+.|=..|.+.|++++|.++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455556666666666666666663
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=85.81 E-value=11 Score=27.01 Aligned_cols=135 Identities=16% Similarity=0.128 Sum_probs=71.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCChHHHHHH
Q 043311 68 PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH---TAVIEAYASAGQGKEALRV 144 (257)
Q Consensus 68 ~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~---~~li~~~~~~~~~~~a~~~ 144 (257)
.|..++..++..+.....-...++=+|--..-.-+-+...++++...+ .-|...+ -.++.+|++.|.
T Consensus 15 dG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~------- 84 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNK------- 84 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT--------
T ss_pred hchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcc-------
Confidence 466777777776666533221111122222222233333444444333 3444332 223444444432
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043311 145 FMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 145 ~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 224 (257)
+...+...+..... .|.-+.-.+++.++.+. -.++....-.+-.+|.+.|+..++.+++.+..
T Consensus 85 -----------~se~vD~ALd~lv~-----~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 85 -----------LSEYVDLALDILVK-----QGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp -------------HHHHHHHHHHHH-----TT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHH-----hccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 34455666777777 55577778888887642 35677788888899999999999999999999
Q ss_pred HCCCC
Q 043311 225 AKGFV 229 (257)
Q Consensus 225 ~~g~~ 229 (257)
+.|+.
T Consensus 148 ekG~k 152 (161)
T PF09205_consen 148 EKGLK 152 (161)
T ss_dssp HTT-H
T ss_pred HhchH
Confidence 99874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.72 E-value=0.23 Score=35.66 Aligned_cols=109 Identities=14% Similarity=0.097 Sum_probs=69.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043311 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206 (257)
Q Consensus 127 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 206 (257)
.+|..+.+.+.++....+++.+...+..-+....+.++..|++.+. .+...++++.. +..-...+++.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~-----~~~l~~~L~~~-------~~yd~~~~~~~ 79 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDP-----YEKLLEFLKTS-------NNYDLDKALRL 79 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTT-----CCHHHHTTTSS-------SSS-CTHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCC-----chHHHHHcccc-------cccCHHHHHHH
Confidence 4577788889999999999999988777789999999999999544 45555555521 11223445555
Q ss_pred HHHcCCHHHHHHHHHHHHHC--CC------------------CCCHHHHHHHHHHhhcCCc
Q 043311 207 FVRAQKVDEARGLLQQMKAK--GF------------------VPDEKAVKEALIDKRGQGF 247 (257)
Q Consensus 207 ~~~~~~~~~a~~~~~~m~~~--g~------------------~p~~~t~~~ll~~~~~~g~ 247 (257)
|.+.|.++++.-++.++... .+ ..|...|..++..|...+.
T Consensus 80 c~~~~l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 80 CEKHGLYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHTTTSHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTSTC
T ss_pred HHhcchHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 56666666666666554321 11 2345666666666666554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=85.02 E-value=19 Score=29.27 Aligned_cols=134 Identities=9% Similarity=0.085 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhccCCcchhHH
Q 043311 104 HEALQLFAQIKD-KGHMPDVVAHTAVIEAYASAG--QGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAADGNAKILG 179 (257)
Q Consensus 104 ~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~-g~~~~~~t~~~ll~~~~~~~~~~~~~~~ 179 (257)
.+|+++|+...- ..+--|..+-..+++...... ....-.++.+-+... |-.++..+...+|+.+++.++ |.
T Consensus 145 v~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~d-----W~ 219 (292)
T PF13929_consen 145 VEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRD-----WN 219 (292)
T ss_pred HHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhccc-----HH
Confidence 445555553222 235567777788888777622 344555566666543 568899999999999999666 99
Q ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHCCCCCCHHHHHHHHHHh
Q 043311 180 DAQKYLMEMVGK-GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM-----KAKGFVPDEKAVKEALIDK 242 (257)
Q Consensus 180 ~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m-----~~~g~~p~~~t~~~ll~~~ 242 (257)
+-+++++..... +..-|...|..+|......|+..-..++.++- .+.|+..+...-..+-..+
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 999999887654 56668999999999999999998888777663 3456777766655554443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=84.80 E-value=21 Score=29.57 Aligned_cols=30 Identities=17% Similarity=0.068 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 197 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
..+|.-+.+.+.+.|.++.|...+.++...
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~ 175 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQL 175 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhcc
Confidence 345666666666666666666666666553
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=84.66 E-value=20 Score=29.08 Aligned_cols=161 Identities=14% Similarity=0.161 Sum_probs=95.4
Q ss_pred ccCCCCHHHHHHHHHHHHhC--CCCCcHH-H-------HHHHHHhcC-ChHHHHHHHHHHHhC--------CCCCC----
Q 043311 65 DEEPTDPRNLQEIFHKMRTE--GLTNNAV-K-------MFDALSKDG-LTHEALQLFAQIKDK--------GHMPD---- 121 (257)
Q Consensus 65 ~~~~~~~~~a~~~~~~m~~~--~~~p~~~-~-------ll~~~~~~~-~~~~a~~~~~~m~~~--------g~~p~---- 121 (257)
..+.|+++.|.-++.+.... ...|+.. . +-....+.+ +++.|...+++-.+. ...|+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35678899999988888763 3445443 2 223334556 788887776654332 12233
Q ss_pred -HHHHHHHHHHHHhcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCH
Q 043311 122 -VVAHTAVIEAYASAGQG---KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197 (257)
Q Consensus 122 -~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 197 (257)
..+...+..+|...+.. ++|.++++.+... ..-...+|..-|+.+.+.++ .+.+.+.+..|... +.-..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~-----~~~~~~~L~~mi~~-~~~~e 155 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFD-----EEEYEEILMRMIRS-VDHSE 155 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCC-----hhHHHHHHHHHHHh-ccccc
Confidence 24566667777776654 4455566556433 33336777778888877344 77788888887764 22234
Q ss_pred HHHHHHHHHH---HHcCCHHHHHHHHHHHHHCCCCCCHH
Q 043311 198 GTYTAVFEAF---VRAQKVDEARGLLQQMKAKGFVPDEK 233 (257)
Q Consensus 198 ~~~~~li~~~---~~~~~~~~a~~~~~~m~~~g~~p~~~ 233 (257)
..+..++..+ ... ....+...++++....+.|...
T Consensus 156 ~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 156 SNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred chHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChh
Confidence 4555555554 333 3456667777776665555553
|
It is also involved in sporulation []. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.49 E-value=27 Score=30.54 Aligned_cols=139 Identities=15% Similarity=0.139 Sum_probs=61.2
Q ss_pred ccccCCCCHHHHHHHHHHHH-hCCCCCcHH-HHHHHHHhcCChHHHHHHHHHHHh-------CC----------CCCCHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMR-TEGLTNNAV-KMFDALSKDGLTHEALQLFAQIKD-------KG----------HMPDVV 123 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~-------~g----------~~p~~~ 123 (257)
....-.++++.+.++.+.-. -..+.++.. .++..+-+.|..+.|+.+-.+-.. .| ...+..
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~ 348 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPE 348 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHH
Confidence 34455678888766665111 122222222 477777777877777776433221 11 123455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 203 (257)
.|..|=+...+.|+++-|.+.|.+.. -|..++-.|...|+ .+...++.+.....| -+|..
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~-----~~~L~kl~~~a~~~~------~~n~a 408 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGD-----REKLSKLAKIAEERG------DINIA 408 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT------HHHHHHHHHHHHHTT-------HHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCC-----HHHHHHHHHHHHHcc------CHHHH
Confidence 55555555555566555555555443 23334444444333 344444433333322 14444
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 043311 204 FEAFVRAQKVDEARGLLQ 221 (257)
Q Consensus 204 i~~~~~~~~~~~a~~~~~ 221 (257)
+.++.-.|+.++..+++.
T Consensus 409 f~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 409 FQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 445555555555555444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=84.13 E-value=11 Score=26.56 Aligned_cols=45 Identities=11% Similarity=0.198 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
+..+.++.+...++.|+....-..+++|-+.+| +..|..+|+.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvND-----fa~aVRilE~iK 111 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVND-----FATAVRILEAIK 111 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhcc-----HHHHHHHHHHHH
Confidence 444555555555566666666666666655444 555555555554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.13 E-value=25 Score=29.92 Aligned_cols=123 Identities=15% Similarity=0.152 Sum_probs=81.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhC-----CC---------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 043311 95 DALSKDGLTHEALQLFAQIKDK-----GH---------MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160 (257)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~-----g~---------~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~ 160 (257)
+.|.+.|++..|..-|+..... +. ..-+.+++.+.-+|.+.+++..|.+.=+..+..+ +.|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 3667888888888877764322 11 1235567888888899999999988888877664 4455555
Q ss_pred HHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCC-HHHHHHHHHHHHH
Q 043311 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR-AQK-VDEARGLLQQMKA 225 (257)
Q Consensus 161 ~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~-~~~a~~~~~~m~~ 225 (257)
---=++|...++ ++.|+..|+.+.+ +.|+-...+.=|..|.+ ..+ .+.-.++|..|-.
T Consensus 295 yRrG~A~l~~~e-----~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGE-----YDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhcc-----HHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445556666444 9999999999886 46766655554444443 333 3344667777754
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=84.05 E-value=29 Score=30.58 Aligned_cols=78 Identities=21% Similarity=0.179 Sum_probs=50.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCH--HHHHHHH
Q 043311 128 VIEAYASAGQGKEALRVFMRMLASG-VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA--GTYTAVF 204 (257)
Q Consensus 128 li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li 204 (257)
+=.++.+.|+.++|.+.|++|.+.. ..-+....-+|+..+.. .+.+.++..++.+..+.. -|.. ..|++.+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe-----lq~Yad~q~lL~kYdDi~-lpkSAti~YTaAL 338 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE-----LQAYADVQALLAKYDDIS-LPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh-----cCCHHHHHHHHHHhcccc-CCchHHHHHHHHH
Confidence 4444566799999999999987652 22244566778888888 444888888888865422 2333 4577766
Q ss_pred HHHHHcC
Q 043311 205 EAFVRAQ 211 (257)
Q Consensus 205 ~~~~~~~ 211 (257)
--+-..+
T Consensus 339 LkaRav~ 345 (539)
T PF04184_consen 339 LKARAVG 345 (539)
T ss_pred HHHHhhc
Confidence 5444333
|
The molecular function of this protein is uncertain. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.00 E-value=20 Score=33.60 Aligned_cols=101 Identities=16% Similarity=0.132 Sum_probs=59.0
Q ss_pred cccccCCCCHHHHHHHHHHHHhCCCCCcHH-HH----HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043311 62 KVVDEEPTDPRNLQEIFHKMRTEGLTNNAV-KM----FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136 (257)
Q Consensus 62 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~l----l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 136 (257)
+..+.+...+..|.++-+ ..+..++.. .+ -+-+.+.|++++|..-|-+-... +.| .-+|.-|.+..
T Consensus 341 L~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq 411 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHH
Confidence 356666677777766543 334444433 12 33445677777777766554432 112 23455566666
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 137 ~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
++.+--.+++.+.+.|+. +...-+.||..|.+.+|
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd 446 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKD 446 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcc
Confidence 666666777777777655 55666677777777666
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.78 E-value=9 Score=35.20 Aligned_cols=106 Identities=21% Similarity=0.181 Sum_probs=82.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~ 171 (257)
..+..+...|+-.+|.++-.+++- ||-..|--=+.+++..++|++-+++-+.++ ...-|...+.+|.+
T Consensus 689 dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~-- 756 (829)
T KOG2280|consen 689 DTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLK-- 756 (829)
T ss_pred HHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHh--
Confidence 367777888999999998888765 899999999999999999998766655443 36678889999999
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043311 172 DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 221 (257)
.|+.++|.+++...... . -...+|.+.|++.+|.++--
T Consensus 757 ---~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 757 ---QGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred ---cccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHH
Confidence 55599999988775321 1 46678888888888877643
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.74 E-value=18 Score=27.81 Aligned_cols=73 Identities=7% Similarity=-0.012 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHhhcCCchhhHH
Q 043311 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK---GFVPDEKAVKEALIDKRGQGFRGVIN 252 (257)
Q Consensus 179 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~~~ 252 (257)
+.|.+.|-.++..+.- +....-..+..|.-..+.+++..++.+..+. +-.+|...+.+|...+.+.|+.+.|.
T Consensus 123 ~~A~~~fL~~E~~~~l-~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPEL-ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 5666666667665544 3333334444444455677777776666643 33667777777777777777766653
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=83.46 E-value=22 Score=28.77 Aligned_cols=185 Identities=10% Similarity=0.052 Sum_probs=104.5
Q ss_pred CCC-CHHHHHHHHHHHHhC--------CCCCcHH--------HHHHHHHhcCChHH---HHHHHHHHHhCCCCCCHHHHH
Q 043311 67 EPT-DPRNLQEIFHKMRTE--------GLTNNAV--------KMFDALSKDGLTHE---ALQLFAQIKDKGHMPDVVAHT 126 (257)
Q Consensus 67 ~~~-~~~~a~~~~~~m~~~--------~~~p~~~--------~ll~~~~~~~~~~~---a~~~~~~m~~~g~~p~~~~~~ 126 (257)
+.+ +++.|..++++..+. ...|+.. .+..+|...+..+. |..+.+.+..... -...+|-
T Consensus 47 ~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~ 125 (278)
T PF08631_consen 47 SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFL 125 (278)
T ss_pred HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHH
Confidence 444 888877776655442 2233332 26777777776554 5666666654421 1245555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHH-HHHHHH-
Q 043311 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG-TYTAVF- 204 (257)
Q Consensus 127 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li- 204 (257)
.=|..+.+.++.+++.+++.+|... +.-....|..+++.+-...+ .. .+.+...++.+....+.|... -...++
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~~i~~l~~--~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl 201 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILHHIKQLAE--KS-PELAAFCLDYLLLNRFKSSEDQWLEKLVL 201 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHHHHHHHHh--hC-cHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 6677777799999999999999976 33345566666666643333 11 345555666655444555443 111111
Q ss_pred -HH--HHHc------CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH-------hhcCCchhhHHhhhc
Q 043311 205 -EA--FVRA------QKVDEARGLLQQMKAK-GFVPDEKAVKEALID-------KRGQGFRGVINILFG 256 (257)
Q Consensus 205 -~~--~~~~------~~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~-------~~~~g~~~~~~~l~~ 256 (257)
.. ..+. .+++.+.++++..... +.+.+..+-.++..- +.+.+++..|...|+
T Consensus 202 ~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 202 TRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 11 1111 1255666666655443 556666665555443 566777777776653
|
It is also involved in sporulation []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=83.43 E-value=16 Score=27.07 Aligned_cols=51 Identities=12% Similarity=0.011 Sum_probs=24.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043311 98 SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149 (257)
Q Consensus 98 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 149 (257)
...|++++|..+|..+.-.+. -+..-|..|=.+|-..+++++|...|....
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~ 98 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAF 98 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666555554321 123334444444444555555555554433
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.33 E-value=18 Score=27.72 Aligned_cols=80 Identities=13% Similarity=0.191 Sum_probs=65.5
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHH
Q 043311 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG---KGMRPNAGTYTAVFEAF 207 (257)
Q Consensus 131 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~li~~~ 207 (257)
-..+.|| +.|++.|-++...+ ..+....-..+-.|--..| .+++..++....+ .+-.+|...+.+|...|
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~-~l~t~elq~aLAtyY~krD-----~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~ 188 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTP-ELETAELQYALATYYTKRD-----PEKTIQLLLRALELSNPDDNFNPEILKSLASIY 188 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHccC-----HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 3555565 99999999999886 4588888888888887555 8999999887764 34478899999999999
Q ss_pred HHcCCHHHHH
Q 043311 208 VRAQKVDEAR 217 (257)
Q Consensus 208 ~~~~~~~~a~ 217 (257)
.+.|+.+.|.
T Consensus 189 ~~~~~~e~AY 198 (203)
T PF11207_consen 189 QKLKNYEQAY 198 (203)
T ss_pred HHhcchhhhh
Confidence 9999999875
|
|
| >PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=82.96 E-value=6.2 Score=22.43 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=15.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043311 98 SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129 (257)
Q Consensus 98 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 129 (257)
.+.|.++++..+++.|.+.|+-.+...|+.++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34444444444455554444444444444443
|
This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.50 E-value=30 Score=29.60 Aligned_cols=90 Identities=18% Similarity=0.185 Sum_probs=54.5
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH-----HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-----KMFDALSKDGLTHEALQLFAQIKDKGHMPD-VVAHTAVIEAYASAG 136 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~ 136 (257)
+...-.|+++.|.+-|+.|... |..- .|.-.--+.|+.+.|..+-+.--+. -|. ...+.++|...+..|
T Consensus 128 Qaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~g 202 (531)
T COG3898 128 QAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAG 202 (531)
T ss_pred HHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcC
Confidence 4445567777777777777763 2211 1222223456666666555544332 233 357888888889999
Q ss_pred ChHHHHHHHHHHHHCC-CCCCH
Q 043311 137 QGKEALRVFMRMLASG-VAPNA 157 (257)
Q Consensus 137 ~~~~a~~~~~~m~~~g-~~~~~ 157 (257)
+|+.|+++.+.-++.. +.+|.
T Consensus 203 dWd~AlkLvd~~~~~~vie~~~ 224 (531)
T COG3898 203 DWDGALKLVDAQRAAKVIEKDV 224 (531)
T ss_pred ChHHHHHHHHHHHHHHhhchhh
Confidence 9999999888766542 44544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.19 E-value=4.4 Score=21.48 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRML 149 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~ 149 (257)
.+++.|-..|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456667777777777777777776654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.68 E-value=12 Score=34.90 Aligned_cols=116 Identities=19% Similarity=0.327 Sum_probs=75.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA----SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~ 167 (257)
+-|+.+++-..++.|..+-+.-. .|..+-..++..|+ ..|++++|...|-+-... ++|.. +|+-|
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~-----Vi~kf 407 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE-----VIKKF 407 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH-----HHHHh
Confidence 46788888888888877655422 34555555555554 468888888887766543 44433 33434
Q ss_pred HhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043311 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 168 ~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 224 (257)
.. +.++..-..+++.+.+.|+. +..+-+.|+.+|.+.++.++..++.+.-.
T Consensus 408 Ld-----aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 408 LD-----AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred cC-----HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 33 45566667778888877765 55566778888888887777666665544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=81.45 E-value=19 Score=26.64 Aligned_cols=88 Identities=13% Similarity=-0.029 Sum_probs=58.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 043311 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211 (257)
Q Consensus 132 ~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 211 (257)
+-..|++++|..+|+-+.-.+.. |..-|..|-..|-. .+.+++|..+|...-..+..-... +=-.-.+|...|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~-----~k~y~~Ai~~Y~~A~~l~~~dp~p-~f~agqC~l~l~ 119 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQL-----KKQFQKACDLYAVAFTLLKNDYRP-VFFTGQCQLLMR 119 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcccCCCCc-cchHHHHHHHhC
Confidence 55679999999999998875422 34434444444444 455999999887654332221111 222457788999
Q ss_pred CHHHHHHHHHHHHHC
Q 043311 212 KVDEARGLLQQMKAK 226 (257)
Q Consensus 212 ~~~~a~~~~~~m~~~ 226 (257)
+.+.|...|+...+.
T Consensus 120 ~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 120 KAAKARQCFELVNER 134 (165)
T ss_pred CHHHHHHHHHHHHhC
Confidence 999999999998873
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=81.26 E-value=27 Score=30.76 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=63.6
Q ss_pred cCChHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhH
Q 043311 100 DGLTHE-ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178 (257)
Q Consensus 100 ~~~~~~-a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 178 (257)
.|++-. ..++|.-++...-.|+.+..-+.| +...|+++.+++.+....+. +.....+-.++++...+ .|+|
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~-----l~r~ 373 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHG-----LARW 373 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhc-----hhhH
Confidence 444433 345666666654455554444433 45567777777666554433 34455566666666666 4447
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 179 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
+.|..+-..|....++ |...........-..|-+|++.-.+++...
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 7777776666655444 223222222233344556666666666543
|
|
| >PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF | Back alignment and domain information |
|---|
Probab=80.62 E-value=1.6 Score=30.92 Aligned_cols=28 Identities=25% Similarity=0.590 Sum_probs=13.3
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043311 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130 (257)
Q Consensus 101 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 130 (257)
|.-.+|..||..|.++|-.|| .|+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 333445555555555555444 2444443
|
The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity []. |
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=80.31 E-value=38 Score=29.28 Aligned_cols=71 Identities=21% Similarity=0.182 Sum_probs=53.6
Q ss_pred HHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCC
Q 043311 124 AHTAVIEAYAS---AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194 (257)
Q Consensus 124 ~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~ 194 (257)
.+..++.++.+ .++.+.|+.++..|.+.|..|....--.++.++...|-.+......|...++..+.-|++
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~p 302 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMP 302 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCc
Confidence 34556666666 378999999999999999888887777777777776655555677777777777776753
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=80.28 E-value=30 Score=28.11 Aligned_cols=92 Identities=13% Similarity=0.016 Sum_probs=45.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCC
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG 173 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~ 173 (257)
|.++...++|.++....-+--+..-+....+...-|-.|+|.++...+.++-..=.+..-.-+.-.|.++...|..+---
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 56666666666655433222222222233444445555667776666666655544321111223366655555442222
Q ss_pred cchhHHHHHHHH
Q 043311 174 NAKILGDAQKYL 185 (257)
Q Consensus 174 ~~~~~~~a~~~~ 185 (257)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 235566666655
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.22 E-value=59 Score=31.46 Aligned_cols=136 Identities=14% Similarity=0.086 Sum_probs=85.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcch
Q 043311 97 LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176 (257)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~ 176 (257)
|+...+...|.+.|+...+-. ..|...+...-+.|+...+++.|+.+.-.--+. -+.-...+|-.-.+... .+.+
T Consensus 502 Yrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qk-a~a~~~k~nW~~rG~yy---Lea~ 576 (1238)
T KOG1127|consen 502 YRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQK-APAFACKENWVQRGPYY---LEAH 576 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhh-chHHHHHhhhhhccccc---cCcc
Confidence 333334455666666555421 135567888899999999999998883222222 11122223322222111 2355
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043311 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241 (257)
Q Consensus 177 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 241 (257)
++..+..-|+.-.... +-|...|..+.++|.+.|+...|.++|.+... ++|+ .+|.....+
T Consensus 577 n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~-s~y~~fk~A 637 (1238)
T KOG1127|consen 577 NLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL-SKYGRFKEA 637 (1238)
T ss_pred chhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH-hHHHHHHHH
Confidence 6777777777765432 33778999999999999999999999998765 4666 355555544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=80.21 E-value=23 Score=31.22 Aligned_cols=115 Identities=15% Similarity=0.221 Sum_probs=76.4
Q ss_pred cccccccccCCCCHHHHHHHHHHHHhCC---CCCcH-----------------H-------HHHHHHHhcCChHHHHHHH
Q 043311 58 DPFKKVVDEEPTDPRNLQEIFHKMRTEG---LTNNA-----------------V-------KMFDALSKDGLTHEALQLF 110 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~-----------------~-------~ll~~~~~~~~~~~a~~~~ 110 (257)
+.|.+.+-.......++.++|++..+.| +..+. . .+-.++-+.|+.++|.+.|
T Consensus 203 dAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~ 282 (539)
T PF04184_consen 203 DAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMF 282 (539)
T ss_pred HHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHH
Confidence 3333344445667888888888776522 11110 0 1555667889999999999
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhccC
Q 043311 111 AQIKDKG-HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV-APNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 111 ~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~t~~~ll~~~~~~~~ 172 (257)
.+|.+.. ..-+..+...||.++...+.+.++..++.+-.+-.. +--..+|+..+--.-..+|
T Consensus 283 rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d 346 (539)
T PF04184_consen 283 RDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGD 346 (539)
T ss_pred HHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhcc
Confidence 9997643 223455888999999999999999999988754322 2234778876654444333
|
The molecular function of this protein is uncertain. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.11 E-value=22 Score=32.52 Aligned_cols=67 Identities=21% Similarity=0.190 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHhhcCC
Q 043311 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK-----------AVKEALIDKRGQG 246 (257)
Q Consensus 178 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-----------t~~~ll~~~~~~g 246 (257)
+..|-++|+.|-+ .-.+++..+..++|++|..+-++.-+ ..||.. -|..-=.++.+.|
T Consensus 763 ~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 763 PGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred cchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 5566666666532 23466777888888888888776543 333321 2222334555666
Q ss_pred chhhHHhhh
Q 043311 247 FRGVINILF 255 (257)
Q Consensus 247 ~~~~~~~l~ 255 (257)
...+|.+++
T Consensus 832 r~~EA~~vL 840 (1081)
T KOG1538|consen 832 RQREAVQVL 840 (1081)
T ss_pred chHHHHHHH
Confidence 655555544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=80.08 E-value=36 Score=28.96 Aligned_cols=163 Identities=15% Similarity=0.134 Sum_probs=103.0
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCC--cHH----HHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTN--NAV----KMFDALSK---DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~----~ll~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 133 (257)
..|....+++...++.+.+....... +.. ...-++.+ .|+.++|.+++..+......++..+|..+-+.|-
T Consensus 149 lSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 149 LSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYK 228 (374)
T ss_pred HHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 67889999999999999999864221 111 23445556 8999999999999766667788888877766653
Q ss_pred hc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCC--cchhHHHHHHHHHHHH-hCCCC---CCHH
Q 043311 134 SA---------GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG--NAKILGDAQKYLMEMV-GKGMR---PNAG 198 (257)
Q Consensus 134 ~~---------~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~--~~~~~~~a~~~~~~m~-~~g~~---p~~~ 198 (257)
.. ...++|.+.|.+--+ +.||.++--.+...+.-.|.. .........-.+..+. +.|.. .|-=
T Consensus 229 D~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYW 306 (374)
T PF13281_consen 229 DLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYW 306 (374)
T ss_pred HHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHH
Confidence 31 236777777775544 345554433333333333321 1111122222223322 33332 2333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 043311 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKG 227 (257)
Q Consensus 199 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g 227 (257)
-+.+++.+++-.|+.++|.+..++|....
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 46889999999999999999999999763
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 88.0 bits (216), Expect = 6e-20
Identities = 31/230 (13%), Positives = 75/230 (32%), Gaps = 15/230 (6%)
Query: 15 SPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPRNL 74
+ R+ + ++ L+ + + P ++ +L + + +
Sbjct: 63 RLQVEPRLLSKQMAGCLEDCTRQAPESPWEE------QLARLLQEAPGKLSLD--VEQAP 114
Query: 75 QEIFHKMRTEGLTNNAVKMFDALSKDG---LTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
+ + G + F L H L + + K + + + AV+
Sbjct: 115 SGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLG 174
Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
+A G KE + V + +G+ P+ +YA ++ + I ++ L +M +
Sbjct: 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTI----ERCLEQMSQE 230
Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
G++ A + RA + + +P + L D
Sbjct: 231 GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD 280
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 3e-05
Identities = 37/281 (13%), Positives = 78/281 (27%), Gaps = 90/281 (32%)
Query: 10 LLHSPSPK-RSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEP 68
++ S +LR+ T L S ++ +K+V L Y + E
Sbjct: 54 IIMSKDAVSGTLRLFWT---------LLSKQEEMVQKFVEEV--LRINYKFLMSPIKTEQ 102
Query: 69 TDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDK----GHMPDVVA 124
P + ++ + R N ++F +K ++ Q + +++ +V+
Sbjct: 103 RQPSMMTRMYIEQRDR--LYNDNQVF---AKYNVSRL--QPYLKLRQALLELRPAKNVLI 155
Query: 125 HTAVIEAYASAGQGK-----EALR-----------VF-------------MRMLASGVAP 155
G GK + +F + ML
Sbjct: 156 D-------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK---- 204
Query: 156 NAYTYAVLIKGLAAAADGNAKI---LGDAQKYLMEMVGKGMRPNA-----GTYTA-VFEA 206
+ + +D ++ I + Q L ++ N A + A
Sbjct: 205 ---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 207 F---------VRAQKVDEARG------LLQQMKAKGFVPDE 232
F R ++V + + + PDE
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 4e-04
Identities = 43/272 (15%), Positives = 82/272 (30%), Gaps = 89/272 (32%)
Query: 7 LRWLLHSPSPKRSLRI----TNTRV-NA----------TLQRSLSSSSDQPTKKYVNTKS 51
LR LL S + L + N + NA T + ++ T ++ +
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI-SLD 292
Query: 52 KLPPPYDP------FKKVVDEEPTD-PRNLQEIFHKMRTEGLTNN--AVKMFDALSKDGL 102
P K +D P D PR E LT N + + +DGL
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPR-----------EVLTTNPRRLSIIAESIRDGL 341
Query: 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
+ + T +IE+ + + E ++F L+ V P +
Sbjct: 342 AT--WDNWKHVNCD-------KLTTIIESSLNVLEPAEYRKMF-DRLS--VFPP----SA 385
Query: 163 LIKGLAAAADGNAKILG---------DAQKYLMEMVGKGM---RPNAGTYTAVFEAFVRA 210
I +L D + ++ + +P T +
Sbjct: 386 HIP---------TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS--------- 427
Query: 211 QKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
+ ++K K + +E A+ +++D
Sbjct: 428 -----IPSIYLELKVK--LENEYALHRSIVDH 452
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 257 | |||
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.91 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.88 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.77 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.75 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.44 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.42 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.39 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.37 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.35 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.35 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.33 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.32 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.3 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.26 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.26 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.25 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.25 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.24 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.23 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.22 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.22 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.21 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.19 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.18 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.17 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.16 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.14 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.14 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.13 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.11 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.09 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.06 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.05 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.03 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.03 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.02 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.02 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.01 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.01 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.99 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.97 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.97 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.96 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 98.95 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.94 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.93 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.93 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 98.92 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.9 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.85 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.85 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.81 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.77 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.72 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.71 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.71 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.64 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.64 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.61 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.61 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 98.55 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 98.55 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 98.54 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.53 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.52 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.52 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 98.48 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 98.47 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.46 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.4 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.39 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.39 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.37 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.37 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 98.34 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.34 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.34 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.33 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.32 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 98.32 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 98.32 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.3 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 98.27 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.27 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.26 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.24 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.24 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 98.23 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 98.23 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.22 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 98.22 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.21 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.21 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.2 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.2 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.2 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.18 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.18 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.17 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.17 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.15 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.15 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.14 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.14 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.12 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.12 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.11 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.09 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.08 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.07 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.06 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.06 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.03 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.01 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.01 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.0 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.96 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 97.96 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 97.95 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.93 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 97.93 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.92 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.91 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.9 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 97.89 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.86 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 97.86 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.85 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 97.82 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.8 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.79 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.78 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.77 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.75 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.74 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.73 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.72 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.72 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.69 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 97.67 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 97.67 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.66 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 97.65 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.64 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 97.63 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 97.61 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.6 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.59 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.57 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.57 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.56 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 97.55 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 97.46 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.45 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.45 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 97.45 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.44 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 97.42 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.42 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.42 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.41 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.41 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.4 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.39 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.39 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.33 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.31 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.31 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.29 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.27 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.25 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.21 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.2 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.19 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.08 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.06 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.03 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 96.98 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.94 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 96.93 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 96.87 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 96.78 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 96.69 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.69 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.66 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.51 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 96.4 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.22 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.2 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 96.16 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.01 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.88 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 95.85 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 95.82 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 95.79 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.69 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.58 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.54 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 95.31 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.28 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.22 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 95.08 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 94.83 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.53 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 94.42 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.4 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 94.38 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 94.04 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 93.98 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 93.56 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 93.5 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 93.45 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 93.09 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 92.72 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 92.7 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 92.22 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.08 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 92.03 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.56 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 90.98 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 90.16 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 89.76 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 89.55 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 89.51 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 89.47 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.14 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 88.96 | |
| 1k1a_A | 241 | B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa | 88.8 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 87.73 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 87.16 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 86.95 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 86.09 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 85.04 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 84.48 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 84.35 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 84.13 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 82.27 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 82.02 | |
| 2fe3_A | 145 | Peroxide operon regulator; oxidative stress regula | 81.92 | |
| 2xig_A | 150 | Ferric uptake regulation protein; hpfur, transcrip | 81.01 | |
| 2r9g_A | 204 | AAA ATPase, central region; structural genomics, P | 80.06 |
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-37 Score=264.71 Aligned_cols=183 Identities=13% Similarity=0.113 Sum_probs=172.9
Q ss_pred cccccCCCCHHHHHHHHHHHHhCCCCCcHH---HHHHHHHhcCC---------hHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043311 62 KVVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGL---------THEALQLFAQIKDKGHMPDVVAHTAVI 129 (257)
Q Consensus 62 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~ll~~~~~~~~---------~~~a~~~~~~m~~~g~~p~~~~~~~li 129 (257)
+..|++.|++++|.++|++|.+.|+.|+.. +||.+|++.+. ++.|.++|++|.+.|+.||..|||+||
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA 112 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 389999999999999999999999999976 48999987665 688999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 043311 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209 (257)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (257)
.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.| .+++|.++|++|.+.|+.||..||++||.+|++
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g-----~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG-----DADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCC-----CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999954 499999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchh
Q 043311 210 AQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249 (257)
Q Consensus 210 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 249 (257)
.|++++|.++|++|.+.|+.|+..||+.++..+.+.+...
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a~~ 227 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVATK 227 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcchh
Confidence 9999999999999999999999999999999988755433
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-35 Score=252.57 Aligned_cols=181 Identities=18% Similarity=0.215 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHhCCCCCcH----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------h
Q 043311 72 RNLQEIFHKMRTEGLTNNA----VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ---------G 138 (257)
Q Consensus 72 ~~a~~~~~~m~~~~~~p~~----~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~---------~ 138 (257)
..+..+.+.+.+.+..+.. ..+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777765443 25799999999999999999999999999999999999999998765 6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043311 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 218 (257)
++|+++|++|.+.|+.||..||+++|++|++ .|.+++|.++|++|.+.|+.||..|||+||.+|++.|++++|.+
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~-----~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~ 161 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVA-----KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYE 161 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHH
Confidence 8899999999999999999999999999999 55599999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 219 LLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 219 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
+|++|.+.|+.||..||++||.+|++.|+.+.|.++|++
T Consensus 162 l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 162 VDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQR 200 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999863
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-24 Score=192.64 Aligned_cols=131 Identities=13% Similarity=0.110 Sum_probs=114.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC
Q 043311 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLA---SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196 (257)
Q Consensus 120 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 196 (257)
--..|||+||++|++.|++++|.++|++|.+ .|+.||..|||+||++||+ .|++++|.++|++|.+.|+.||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck-----~G~~~eA~~Lf~eM~~~G~~PD 199 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR-----QGAFKELVYVLFMVKDAGLTPD 199 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHTTCCCC
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHh-----CCCHHHHHHHHHHHHHcCCCCc
Confidence 3467899999999999999999999988764 4789999999999999999 5559999999999999999999
Q ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 197 AGTYTAVFEAFVRAQK-VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 197 ~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
.+|||+||.++++.|+ .++|.++|++|.+.|+.||..||++++.++.+.+-.+.+.+++
T Consensus 200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~ 259 (1134)
T 3spa_A 200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVK 259 (1134)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhC
Confidence 9999999999999987 5788999999999999999999998888888877777666653
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.4e-23 Score=183.82 Aligned_cols=146 Identities=17% Similarity=0.183 Sum_probs=123.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043311 91 VKMFDALSKDGLTHEALQLFAQIKD---KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167 (257)
Q Consensus 91 ~~ll~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~ 167 (257)
++||++|++.|++++|.++|.+|.+ .|+.||++|||+||.+|++.|++++|.++|++|.+.|+.||.+|||++|.++
T Consensus 131 naLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~gl 210 (1134)
T 3spa_A 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCM 210 (1134)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 3699999999999999999998864 4899999999999999999999999999999999999999999999999999
Q ss_pred HhccCCcchh-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHH
Q 043311 168 AAAADGNAKI-LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD------EKAVKEALI 240 (257)
Q Consensus 168 ~~~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~------~~t~~~ll~ 240 (257)
++ .|+ .+.|.++|++|.+.|+.||..+|++++.++.+.+ +++.++++ ..++.|+ ..|...|.+
T Consensus 211 cK-----~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 211 GR-----QDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HH-----HTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred Hh-----CCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99 444 5789999999999999999999999998877664 44444444 3456654 444445555
Q ss_pred HhhcCC
Q 043311 241 DKRGQG 246 (257)
Q Consensus 241 ~~~~~g 246 (257)
-|...+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 555544
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-17 Score=145.83 Aligned_cols=228 Identities=9% Similarity=-0.068 Sum_probs=178.8
Q ss_pred ccccchhhhhhhhcccCCCCccchhhcccCCCCCC-cccccc--ccccCCCCHHHHHHHHHHHHhCCCC-Cc-HHHHHHH
Q 043311 22 ITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPP-YDPFKK--VVDEEPTDPRNLQEIFHKMRTEGLT-NN-AVKMFDA 96 (257)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~--~~~~~~~~~~~a~~~~~~m~~~~~~-p~-~~~ll~~ 96 (257)
.....+..+.......+....+..++.+.....|+ ...+.. ..+.+.|++++|.++++.+.+.... +. ...+...
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 382 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIY 382 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 44556666677777777777777665544333333 222222 7777888999999998888764321 11 1247889
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcch
Q 043311 97 LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176 (257)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~ 176 (257)
|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.+..+|.+ .|
T Consensus 383 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~-----~g 455 (597)
T 2xpi_A 383 YLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ-----LG 455 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH-----HT
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH-----cC
Confidence 999999999999999998742 2357899999999999999999999999998764 4578999999999999 44
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHhhcCCchhh
Q 043311 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK----GFVPD--EKAVKEALIDKRGQGFRGV 250 (257)
Q Consensus 177 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~--~~t~~~ll~~~~~~g~~~~ 250 (257)
++++|.++|+.+.+.. +.+..+|+.+...|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|+.+.
T Consensus 456 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 534 (597)
T 2xpi_A 456 NILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534 (597)
T ss_dssp CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHH
Confidence 4999999999998642 347889999999999999999999999999876 77888 7899999999999999999
Q ss_pred HHhhhcC
Q 043311 251 INILFGK 257 (257)
Q Consensus 251 ~~~l~~k 257 (257)
|..+|++
T Consensus 535 A~~~~~~ 541 (597)
T 2xpi_A 535 AIDALNQ 541 (597)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988863
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.3e-17 Score=144.37 Aligned_cols=225 Identities=10% Similarity=-0.048 Sum_probs=183.4
Q ss_pred cchhhhhhhhcccCCCCccchhhcccCCCCCCc-ccccc--ccccCCCCHHHHHHHHHHHHhCCCC-C-cHHHHHHHHHh
Q 043311 25 TRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPY-DPFKK--VVDEEPTDPRNLQEIFHKMRTEGLT-N-NAVKMFDALSK 99 (257)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~--~~~~~~~~~~~a~~~~~~m~~~~~~-p-~~~~ll~~~~~ 99 (257)
..+..+.......+....+..++.+.....|+. ..+.. ..+.+.|++++|.++|+.+.+.... + ....+..+|.+
T Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 419 (597)
T 2xpi_A 340 DVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAI 419 (597)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344555555566666666666654433333432 22222 7889999999999999999874322 2 22368999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHH
Q 043311 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179 (257)
Q Consensus 100 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~ 179 (257)
.|++++|.++|+++.+.+ +.+..+|+.+..+|.+.|++++|.++|+++.+.+ +.+..+|+.+...|.+. |+++
T Consensus 420 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-----g~~~ 492 (597)
T 2xpi_A 420 EGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNK-----SDMQ 492 (597)
T ss_dssp HTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHT-----TCHH
T ss_pred cCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHh-----CCHH
Confidence 999999999999998763 3478999999999999999999999999999764 44789999999999994 4499
Q ss_pred HHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHh
Q 043311 180 DAQKYLMEMVGK----GMRPN--AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINI 253 (257)
Q Consensus 180 ~a~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 253 (257)
+|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|.++|+++.+.+ +.+..+|..+...|...|+.+.|..
T Consensus 493 ~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAIT 571 (597)
T ss_dssp HHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999865 77888 7899999999999999999999999998875 4588999999999999999999999
Q ss_pred hhcC
Q 043311 254 LFGK 257 (257)
Q Consensus 254 l~~k 257 (257)
+|+|
T Consensus 572 ~~~~ 575 (597)
T 2xpi_A 572 HLHE 575 (597)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-11 Score=102.81 Aligned_cols=222 Identities=10% Similarity=0.016 Sum_probs=135.8
Q ss_pred hhhhhhhhcccCCCCccchhhcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCCC-c-HHHHHHHHHhcC
Q 043311 27 VNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLTN-N-AVKMFDALSKDG 101 (257)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~p-~-~~~ll~~~~~~~ 101 (257)
+..+.......+....+...+.+.....|+...... ..+...|++++|.+.|+.+.+..... . ...+...+.+.|
T Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 183 (388)
T 1w3b_A 104 YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183 (388)
T ss_dssp HHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 334444445555565555554444444454333222 55666777777777777776642111 1 113555566666
Q ss_pred ChHHHHHHHHHHHhCC--------------------------------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043311 102 LTHEALQLFAQIKDKG--------------------------------HMP-DVVAHTAVIEAYASAGQGKEALRVFMRM 148 (257)
Q Consensus 102 ~~~~a~~~~~~m~~~g--------------------------------~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m 148 (257)
++++|...|+++.+.. ..| +..+|..+..+|.+.|++++|...|+++
T Consensus 184 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 263 (388)
T 1w3b_A 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRA 263 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666666554321 123 3556666777777777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 043311 149 LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228 (257)
Q Consensus 149 ~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 228 (257)
.+.+ +.+..+|..+...+.+.| ++++|.+.|+.+.+. .+.+..+|+.+...+.+.|++++|..+++++.+..
T Consensus 264 l~~~-p~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 335 (388)
T 1w3b_A 264 IELQ-PHFPDAYCNLANALKEKG-----SVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF- 335 (388)
T ss_dssp HHTC-SSCHHHHHHHHHHHHHHS-----CHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-
T ss_pred HhhC-CCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 6642 224566777777777733 377777777777653 23456677777777777777777777777776542
Q ss_pred CCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 229 VPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 229 ~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+.+..++..+...+...|+.+.|...|+
T Consensus 336 p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 336 PEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3346677777777777777777777665
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-11 Score=103.12 Aligned_cols=174 Identities=11% Similarity=0.002 Sum_probs=131.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+...|++++|...|....+.... +.. ..+..+|.+.|++++|.+.|+.+.+.. +.+..+|..+..++.+.|++++
T Consensus 211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 289 (388)
T 1w3b_A 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3444555555555555555443211 111 147778899999999999999998853 2246789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 220 (257)
|...|+++.+.. +.+..+|..+...+...|+ +++|..+|+++.+. .+.+..++..+...+.+.|++++|...|
T Consensus 290 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 290 AEDCYNTALRLC-PTHADSLNNLANIKREQGN-----IEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC-----HHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHhhC-cccHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999763 6688999999999999444 99999999999864 2345778999999999999999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHhhcCC
Q 043311 221 QQMKAKGFVP-DEKAVKEALIDKRGQG 246 (257)
Q Consensus 221 ~~m~~~g~~p-~~~t~~~ll~~~~~~g 246 (257)
+++.+. .| +...+..+-..+...|
T Consensus 363 ~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 363 KEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 999874 44 4555555555444433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-11 Score=104.84 Aligned_cols=216 Identities=9% Similarity=0.023 Sum_probs=110.3
Q ss_pred hhhhhhcccCCCCccchhhcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCCCc----HH-HH-------
Q 043311 29 ATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLTNN----AV-KM------- 93 (257)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~-~l------- 93 (257)
.+.......+....+...+.+.....|+...... ..+...|++++|.+.|+.+.+...... .. .+
T Consensus 65 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 144 (450)
T 2y4t_A 65 RRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ 144 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH
Confidence 3333444445555554444443333333221111 556667777777777777666432111 00 11
Q ss_pred -----HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043311 94 -----FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168 (257)
Q Consensus 94 -----l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~ 168 (257)
...+.+.|++++|..+|+.+.+.. +.+...+..+..+|.+.|++++|..+|+++.+.. +.+..+|..+...+.
T Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 222 (450)
T 2y4t_A 145 RLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYY 222 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 223566666666666666665531 2345566666666666666666666666665442 335566666666666
Q ss_pred hccCCcchhHHHHHHHHHHHHhCCCCCCH-HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCC----
Q 043311 169 AAADGNAKILGDAQKYLMEMVGKGMRPNA-GTYTAV------------FEAFVRAQKVDEARGLLQQMKAKGFVPD---- 231 (257)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~---- 231 (257)
..|+ +++|...|+.+... .|+. ..+..+ ...|.+.|++++|..+|+++.+. .|+
T Consensus 223 ~~g~-----~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~ 293 (450)
T 2y4t_A 223 QLGD-----HELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEY 293 (450)
T ss_dssp HTTC-----HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHH
T ss_pred HcCC-----HHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHH
Confidence 6333 66666666555432 2222 222222 44555555555555555555542 233
Q ss_pred -HHHHHHHHHHhhcCCchhhHHhhh
Q 043311 232 -EKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 232 -~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
...+..+...+.+.|+.+.|..++
T Consensus 294 ~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 294 TVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 234444555555555555555544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-10 Score=94.06 Aligned_cols=182 Identities=13% Similarity=0.075 Sum_probs=145.6
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV----KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG 138 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 138 (257)
..+...++.+.|.+.++.+...+..|+.. .+-..+.+.|++++|.+.|+. ..+...+..+...|.+.|++
T Consensus 73 ~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~ 146 (291)
T 3mkr_A 73 EYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRL 146 (291)
T ss_dssp HHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCH
Confidence 67788999999999999999887666543 245788899999999999987 46788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043311 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 218 (257)
++|...|+++.+.. |+.. ...+..++..... ..|++++|..+|+++.+. .+.+...|+.+-.++.+.|++++|..
T Consensus 147 ~~A~~~l~~~~~~~--p~~~-~~~l~~a~~~l~~-~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~ 221 (291)
T 3mkr_A 147 DLARKELKKMQDQD--EDAT-LTQLATAWVSLAA-GGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEG 221 (291)
T ss_dssp HHHHHHHHHHHHHC--TTCH-HHHHHHHHHHHHH-CTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhhC--cCcH-HHHHHHHHHHHHh-CchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999763 5532 2233333322111 146699999999999875 45678889999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhcCCchhh-HHhhhc
Q 043311 219 LLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV-INILFG 256 (257)
Q Consensus 219 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-~~~l~~ 256 (257)
.|++..... +-+..++..+...+...|.... +.++++
T Consensus 222 ~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~ 259 (291)
T 3mkr_A 222 VLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLS 259 (291)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999988763 3477889999999999998754 667764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.4e-10 Score=89.27 Aligned_cols=186 Identities=8% Similarity=-0.022 Sum_probs=149.0
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+...|+++.|.+.|+.+.+.... +.. ..+...|.+.|++++|.++|+...+.. +.+...|..+...|...|++++
T Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 123 (252)
T 2ho1_A 45 LGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEE 123 (252)
T ss_dssp HHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHH
Confidence 6677889999999999998875322 111 246778889999999999999987753 2367788899999999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043311 141 ALRVFMRMLASGVAP-NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219 (257)
Q Consensus 141 a~~~~~~m~~~g~~~-~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 219 (257)
|..+|++..+.+..| +...|..+...+...|+ +++|.++|+...+.. +.+...+..+...+...|++++|..+
T Consensus 124 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 197 (252)
T 2ho1_A 124 AYQRLLEASQDTLYPERSRVFENLGLVSLQMKK-----PAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQY 197 (252)
T ss_dssp HHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999998743444 56778888888888444 999999999887642 23577888899999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 220 LQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 220 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
++++.+.. ..+...+..+...+...|+.+.|..+++
T Consensus 198 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 233 (252)
T 2ho1_A 198 YDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGL 233 (252)
T ss_dssp HHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99988753 3567778888888999999999988775
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-11 Score=103.38 Aligned_cols=223 Identities=11% Similarity=0.026 Sum_probs=171.9
Q ss_pred cchhhhhhhhcccCCCCccchhhcccCCCCCCcc---ccc--------------c-ccccCCCCHHHHHHHHHHHHhCCC
Q 043311 25 TRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYD---PFK--------------K-VVDEEPTDPRNLQEIFHKMRTEGL 86 (257)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~--------------~-~~~~~~~~~~~a~~~~~~m~~~~~ 86 (257)
..+..+.......+....+...+.+.....|+.. ... . ..+...|+++.|.+.|+.+.+...
T Consensus 95 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 174 (450)
T 2y4t_A 95 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV 174 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444555556667777777777666666666543 111 1 347789999999999999987532
Q ss_pred C-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH-
Q 043311 87 T-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL- 163 (257)
Q Consensus 87 ~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~l- 163 (257)
. +.. ..+..+|.+.|++++|.++|+.+.+.. +.+..+|..+..+|...|++++|...|+++.+.. +.+...+..+
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~ 252 (450)
T 2y4t_A 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYK 252 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 2 111 247889999999999999999998752 3468899999999999999999999999998652 2344455444
Q ss_pred -----------HHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 043311 164 -----------IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN-----AGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227 (257)
Q Consensus 164 -----------l~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 227 (257)
...|.. .|.+++|..+|+.+.+. .|+ ..+|..+...+.+.|++++|...++++....
T Consensus 253 ~~~~~~~~~~~~~~~~~-----~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 253 QVKKLNKLIESAEELIR-----DGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325 (450)
T ss_dssp HHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 677888 45599999999999863 455 4578889999999999999999999998753
Q ss_pred CCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 228 FVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 228 ~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
+.+...+..+..+|...|+.+.|...|++
T Consensus 326 -p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 326 -PDNVNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 34689999999999999999999988763
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.1e-10 Score=85.00 Aligned_cols=187 Identities=11% Similarity=-0.006 Sum_probs=148.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA-GQGK 139 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-~~~~ 139 (257)
..+...|+++.|.+.|+...+.... +.. ..+...|...|++++|.++|+...+.. +.+..+|..+...|... |+++
T Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 94 (225)
T 2vq2_A 16 MEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPA 94 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHH
Confidence 5667889999999999998875322 222 247778889999999999999987752 23677889999999999 9999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043311 140 EALRVFMRMLASGVAP-NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~-~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 218 (257)
+|...|++..+.+..| +...|..+...+...|+ +++|...|+...+.. +.+...+..+...+.+.|++++|..
T Consensus 95 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 95 ESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ-----FGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp HHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHH
Confidence 9999999998743333 36788888888888444 999999999887642 2357788889999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 219 LLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 219 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
++++..+..-..+...+..+...+...|+.+.+..+++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 206 (225)
T 2vq2_A 169 YFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEA 206 (225)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 99998876422567777777788889999998887764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-10 Score=89.04 Aligned_cols=185 Identities=17% Similarity=0.090 Sum_probs=112.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCC-cH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTN-NA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p-~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+...|+++.|...|+...+..... .. ..+...|.+.|++++|.+.|+...+.. +.+...|..+...|...|++++
T Consensus 31 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 109 (243)
T 2q7f_A 31 GRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKE 109 (243)
T ss_dssp -----------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHH
Confidence 45566777777777777776632211 11 135566677777777777777766542 2355667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 220 (257)
|...|++..+.. +.+...|..+...+...|+ +++|..+++...+.. +.+...+..+...+.+.|++++|.+.+
T Consensus 110 A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~-----~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 110 AKDMFEKALRAG-MENGDLFYMLGTVLVKLEQ-----PKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp HHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSC-----HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777776653 3356667777777777443 777777777766431 224566667777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 221 QQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 221 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
++..+.. ..+..++..+...+...|+.+.|..+|+
T Consensus 183 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 183 AAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 7776543 2345667777777777777777776664
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.4e-10 Score=87.11 Aligned_cols=185 Identities=15% Similarity=-0.009 Sum_probs=142.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA----- 135 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----- 135 (257)
..+.+.|++++|...|+...+..- .+... .+-.++.+.|++++|...|+...+.. +-+...|..+-.++...
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~ 91 (217)
T 2pl2_A 13 VQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAE 91 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhh
Confidence 567789999999999999987532 22222 46778899999999999999988752 23567888888999999
Q ss_pred ------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 043311 136 ------GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209 (257)
Q Consensus 136 ------~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (257)
|++++|...|++..+.. +-+...|..+-..+...| ++++|...|++..+.. .+...+..+-..|..
T Consensus 92 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~ 163 (217)
T 2pl2_A 92 DRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLG-----ERDKAEASLKQALALE--DTPEIRSALAELYLS 163 (217)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHH
T ss_pred hhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhcc--cchHHHHHHHHHHHH
Confidence 99999999999998753 336788888888898844 4999999999988765 688889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 210 AQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 210 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.|++++|...|++..+.. +-+...+..+-..+...|+.+.|...|++
T Consensus 164 ~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 164 MGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999998753 33677888888999999999999988875
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-10 Score=96.37 Aligned_cols=220 Identities=10% Similarity=-0.014 Sum_probs=141.1
Q ss_pred hhhhcccCCCCccchhhcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHH
Q 043311 31 LQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHE 105 (257)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~ 105 (257)
.......+....+...+.+.....|+...... ..+...|+++.|.+.|+.+.+.... +.. ..+..+|...|++++
T Consensus 71 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 150 (368)
T 1fch_A 71 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQ 150 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 33344445555555444443333333221111 5556666666666666666654311 111 135555566666666
Q ss_pred HHHHHHHHHhCCC-----------------------------------------------CC---CHHHHHHHHHHHHhc
Q 043311 106 ALQLFAQIKDKGH-----------------------------------------------MP---DVVAHTAVIEAYASA 135 (257)
Q Consensus 106 a~~~~~~m~~~g~-----------------------------------------------~p---~~~~~~~li~~~~~~ 135 (257)
|.+.|+.+.+... .| +..+|..+-..|.+.
T Consensus 151 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~ 230 (368)
T 1fch_A 151 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 230 (368)
T ss_dssp HHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHc
Confidence 6666655544211 12 467788888888888
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 043311 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215 (257)
Q Consensus 136 ~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 215 (257)
|++++|...|++..+.. +.+..+|..+...+...|+ +++|...|+...+.. +.+...+..+...|.+.|++++
T Consensus 231 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 303 (368)
T 1fch_A 231 GEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQ-----SEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHRE 303 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 88888888888887652 3457788888888888444 888888888876531 2356778888888888899999
Q ss_pred HHHHHHHHHHCCCC----------CCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 216 ARGLLQQMKAKGFV----------PDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 216 a~~~~~~m~~~g~~----------p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
|...|++..+..-. ....++..+..++...|+.+.+..++.+
T Consensus 304 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 304 AVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 98888888763211 1257888888888888888888887653
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.3e-10 Score=91.69 Aligned_cols=187 Identities=11% Similarity=-0.015 Sum_probs=119.7
Q ss_pred ccccCCC-CHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 043311 63 VVDEEPT-DPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 63 ~~~~~~~-~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 139 (257)
..+...| +++.|.+.|+...+..-. +.. ..+...+...|++++|.+.|+...+.. +.+...+..+-..|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 4555666 677777777766654321 111 235666667777777777777766542 123455556667777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHHcC
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG--------MRPNAGTYTAVFEAFVRAQ 211 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g--------~~p~~~~~~~li~~~~~~~ 211 (257)
+|...|++..+.. +.+...+..+...+...|+ +++|...++...+.. .+.....|..+...+...|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGE-----WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHccc-----HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 7777777776653 3356677777777777433 777777777665420 1233457777777777778
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 212 KVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 212 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
++++|...+++..+.. +.+...+..+-..+...|+.+.|..+|++
T Consensus 251 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (330)
T 3hym_B 251 KYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHT 295 (330)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 8888888877777653 23556677777777777777777777654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.5e-10 Score=90.89 Aligned_cols=224 Identities=9% Similarity=-0.098 Sum_probs=164.2
Q ss_pred chhhhhhhhcccCCCCccchhhcccCCCCCCccccc---cccccCCCCHHHHHHHHHHHHhCCC-CCcHH-HHHHHHHhc
Q 043311 26 RVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFK---KVVDEEPTDPRNLQEIFHKMRTEGL-TNNAV-KMFDALSKD 100 (257)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~ll~~~~~~ 100 (257)
.+..........++...+...+.+.....|...... ...+...|++++|..++..+.+... .+... .+-..+...
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 103 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMV 103 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 334444555556666666665544333334332222 2666788999999999998887432 23222 467778888
Q ss_pred C-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHH
Q 043311 101 G-LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179 (257)
Q Consensus 101 ~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~ 179 (257)
| ++++|.+.|+...+.. +.+...|..+-..+...|++++|...|++..+.. +.+...+..+...+...|+ ++
T Consensus 104 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~-----~~ 176 (330)
T 3hym_B 104 GHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN-----SK 176 (330)
T ss_dssp CSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC-----HH
T ss_pred hhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh-----HH
Confidence 8 8999999999888753 2356788889999999999999999999988763 3345677778888888444 99
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHhhcCCchhhH
Q 043311 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG--------FVPDEKAVKEALIDKRGQGFRGVI 251 (257)
Q Consensus 180 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--------~~p~~~t~~~ll~~~~~~g~~~~~ 251 (257)
+|.+.++...+.. +.+...+..+...+...|++++|...+++..+.. ...+...+..+-..+...|+.+.|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999988652 3356788889999999999999999999988631 133457888888999999999999
Q ss_pred HhhhcC
Q 043311 252 NILFGK 257 (257)
Q Consensus 252 ~~l~~k 257 (257)
..+|++
T Consensus 256 ~~~~~~ 261 (330)
T 3hym_B 256 LDYHRQ 261 (330)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888753
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.9e-11 Score=97.67 Aligned_cols=186 Identities=8% Similarity=-0.067 Sum_probs=113.5
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+.+.|++++|.++|+.+.+.... +.. ..+..+|.+.|++++|.+.|+...+.. +.+..+|..+..+|...|++++
T Consensus 73 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 151 (365)
T 4eqf_A 73 LKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQD 151 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHH
Confidence 4445555555555555555543211 111 124455555555555555555554431 1234455555555555555555
Q ss_pred HHHHHHHHH--------------------------------------------HCCC-CCCHHHHHHHHHHHHhccCCcc
Q 043311 141 ALRVFMRML--------------------------------------------ASGV-APNAYTYAVLIKGLAAAADGNA 175 (257)
Q Consensus 141 a~~~~~~m~--------------------------------------------~~g~-~~~~~t~~~ll~~~~~~~~~~~ 175 (257)
|...|+++. +.+- .++..+|..+...+...|
T Consensus 152 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g---- 227 (365)
T 4eqf_A 152 ACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG---- 227 (365)
T ss_dssp HHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC----
Confidence 555555544 3211 115677777777777744
Q ss_pred hhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 176 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
++++|.++|+...+.. +.+..+|+.+...|...|++++|...|++..+.. +-+..++..+-..+...|+.+.|..+|
T Consensus 228 -~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 304 (365)
T 4eqf_A 228 -EFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNF 304 (365)
T ss_dssp -CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred -CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4888888888876531 2356778888888888888888888888887653 234777777888888888888887776
Q ss_pred c
Q 043311 256 G 256 (257)
Q Consensus 256 ~ 256 (257)
+
T Consensus 305 ~ 305 (365)
T 4eqf_A 305 L 305 (365)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.24 E-value=8.8e-11 Score=94.98 Aligned_cols=153 Identities=10% Similarity=-0.009 Sum_probs=114.3
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcch
Q 043311 97 LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176 (257)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~ 176 (257)
+...|++++|.++|+...+.. +.+...+..+...|.+.|++++|...|++..+.. +.+..+|..+...+...|+
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~---- 221 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNR---- 221 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC----
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCC----
Confidence 334444555555555554432 2256778888888999999999999999888763 3467888888888888444
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHhhcC
Q 043311 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP-----------DEKAVKEALIDKRGQ 245 (257)
Q Consensus 177 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-----------~~~t~~~ll~~~~~~ 245 (257)
+++|...|+...+.. +.+...+..+...|...|++++|.+.+++..+..-.. +...+..+...+...
T Consensus 222 -~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 222 -PQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp -HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence 999999998877642 2356788888899999999999999999887643221 467888888899999
Q ss_pred CchhhHHhhhcC
Q 043311 246 GFRGVINILFGK 257 (257)
Q Consensus 246 g~~~~~~~l~~k 257 (257)
|+.+.|..++++
T Consensus 300 g~~~~A~~~~~~ 311 (327)
T 3cv0_A 300 NRPDLVELTYAQ 311 (327)
T ss_dssp TCHHHHHHHTTC
T ss_pred CCHHHHHHHHHH
Confidence 999999888764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.5e-10 Score=94.08 Aligned_cols=186 Identities=10% Similarity=-0.013 Sum_probs=133.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCc-H-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNN-A-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~-~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+...|+++.|...|+.+.+...... . ..+..+|.+.|++++|.+.|+...+.. +.+..+|..+...|...|++++
T Consensus 72 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 150 (368)
T 1fch_A 72 LRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQ 150 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 778899999999999999998642211 1 247788999999999999999998763 3467899999999999999999
Q ss_pred HHHHHHHHHHCCCC-----------------------------------------------C---CHHHHHHHHHHHHhc
Q 043311 141 ALRVFMRMLASGVA-----------------------------------------------P---NAYTYAVLIKGLAAA 170 (257)
Q Consensus 141 a~~~~~~m~~~g~~-----------------------------------------------~---~~~t~~~ll~~~~~~ 170 (257)
|...|+++.+.... | +..+|..+...+...
T Consensus 151 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~ 230 (368)
T 1fch_A 151 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 230 (368)
T ss_dssp HHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHc
Confidence 99999988764311 1 355666666666663
Q ss_pred cCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhh
Q 043311 171 ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250 (257)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 250 (257)
| .+++|...|+...... +.+...|..+...+...|++++|...|+++.+.. +.+...+..+-..+...|+.+.
T Consensus 231 g-----~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 303 (368)
T 1fch_A 231 G-----EYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHRE 303 (368)
T ss_dssp T-----CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred C-----CHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 3 3777777777665431 2245566677777777777777777777766542 2345666666677777777777
Q ss_pred HHhhhc
Q 043311 251 INILFG 256 (257)
Q Consensus 251 ~~~l~~ 256 (257)
|...|+
T Consensus 304 A~~~~~ 309 (368)
T 1fch_A 304 AVEHFL 309 (368)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.22 E-value=9.6e-10 Score=85.71 Aligned_cols=188 Identities=14% Similarity=0.037 Sum_probs=141.6
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCC--CCC----HHHHHHHHHHHHhc
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-KMFDALSKDGLTHEALQLFAQIKDKGH--MPD----VVAHTAVIEAYASA 135 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~~~~li~~~~~~ 135 (257)
..+...|+++.|.+.|+...+..-.+... .+..+|...|++++|.+.|+...+... .++ ..+|..+-..|...
T Consensus 13 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (258)
T 3uq3_A 13 NKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL 92 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHc
Confidence 45566788888888888888766222222 467778888888888888888765321 112 57788888888888
Q ss_pred CChHHHHHHHHHHHHCC------------------------C-CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh
Q 043311 136 GQGKEALRVFMRMLASG------------------------V-APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 136 ~~~~~a~~~~~~m~~~g------------------------~-~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
|++++|...|++..+.. . +.+...|..+...+... |++++|...|+...+
T Consensus 93 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~A~~~~~~a~~ 167 (258)
T 3uq3_A 93 GDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK-----SDWPNAVKAYTEMIK 167 (258)
T ss_dssp TCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHh
Confidence 88888888888887631 1 22446677777778884 449999999999876
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 191 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.. +.+...|..+...|...|++++|...+++..+.. +.+...+..+-..+...|+.+.|...|++
T Consensus 168 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 168 RA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 42 3367788889999999999999999999998764 34578888888899999999999888753
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.22 E-value=6.3e-10 Score=91.84 Aligned_cols=163 Identities=10% Similarity=-0.009 Sum_probs=130.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 90 AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
...+-..+.+.|++++|.++|+.+.+.. +.+..+|..+-.+|.+.|++++|...|++..+.. +.+..+|..+...|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 4467788899999999999999998753 3467899999999999999999999999998763 4468899999999998
Q ss_pred ccC---------------------------------------CcchhHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHH
Q 043311 170 AAD---------------------------------------GNAKILGDAQKYLMEMVGKGMRP---NAGTYTAVFEAF 207 (257)
Q Consensus 170 ~~~---------------------------------------~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~ 207 (257)
.|+ ...|.+++|.++|+++.+. .| +..++..+...|
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHHHHHH
Confidence 666 0123344444444444432 23 578899999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 208 VRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 208 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
...|++++|.++|++..+.. +.+..++..+...+...|+.+.|...|++
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999998763 34688999999999999999999988863
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.2e-10 Score=90.10 Aligned_cols=177 Identities=13% Similarity=0.037 Sum_probs=140.3
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH---HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCh
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQG 138 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~ 138 (257)
.++...|+++.|...++. .-.|+.. .+...+...++.++|.+.++++...+..|+ ...+..+-.++...|++
T Consensus 42 r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~ 117 (291)
T 3mkr_A 42 RAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNP 117 (291)
T ss_dssp HHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCH
Confidence 788889999999976644 1233322 367788889999999999999988776665 45556666889999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHHcCCHHH
Q 043311 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY---TAVFEAFVRAQKVDE 215 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~---~~li~~~~~~~~~~~ 215 (257)
++|...|++ ..+...+..+...+.+ .|++++|.+.|+.+.+. .|+...+ ..++..+...|++++
T Consensus 118 ~~Al~~l~~------~~~~~~~~~l~~~~~~-----~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~e 184 (291)
T 3mkr_A 118 DAALRTLHQ------GDSLECMAMTVQILLK-----LDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQD 184 (291)
T ss_dssp HHHHHHHTT------CCSHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHH
T ss_pred HHHHHHHhC------CCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHH
Confidence 999999987 5688899999999999 45599999999999875 3654322 223344445689999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 216 ARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 216 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
|..+|+++.+. .+.+...+..+-.++...|+.+.|+..|++
T Consensus 185 A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 185 AYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999987 456888999999999999999999998864
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.19 E-value=3.6e-11 Score=101.00 Aligned_cols=197 Identities=11% Similarity=0.038 Sum_probs=82.7
Q ss_pred chhhhhhhhcccCCCCccchhhcccCCCCCCccccccccccCCCCHHHHHHHHHHHHhCCCCCcH-HHHHHHHHhcCChH
Q 043311 26 RVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNA-VKMFDALSKDGLTH 104 (257)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~ll~~~~~~~~~~ 104 (257)
.+..+....+..+....+.+.+.+.. .|+.....+..+...|++++|.+.++...+..-.|.. ..++.+|.+.|+++
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika~--D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~ 111 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKAD--DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLA 111 (449)
T ss_dssp -----------------------------------------------------------------------------CHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHH
Confidence 66677777777777777666655432 2223333337778889999999977766664212221 14888999999998
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHH
Q 043311 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184 (257)
Q Consensus 105 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~ 184 (257)
++.++++ .|+..+|+.+-..|...|++++|...|..+ ..|..+...+.+.|+ ++.|.+.
T Consensus 112 e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~-----yq~AVea 170 (449)
T 1b89_A 112 ELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGE-----YQAAVDG 170 (449)
T ss_dssp HHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTC-----HHHHHHH
T ss_pred HHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhcc-----HHHHHHH
Confidence 8888774 377778999999999999999999999876 378888888888555 8888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+... .+..+|..++.+|+..|+++.|..+... +...+.-...++..|.+.|.++.+..+++
T Consensus 171 ~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 171 ARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp HHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 8887 2688889999999999988888665443 33344445578888888888888887775
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.5e-09 Score=83.98 Aligned_cols=197 Identities=10% Similarity=0.012 Sum_probs=140.3
Q ss_pred ccccchhhhhhhhcccCCCCccchhhcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCCC-cH-HHHHHH
Q 043311 22 ITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLTN-NA-VKMFDA 96 (257)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~p-~~-~~ll~~ 96 (257)
.....+..........+....+...+.+.....|+...... ..+...|++++|.+.++...+..... .. ..+...
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 33344444555666677777777776665555554322222 67789999999999999998754222 11 247788
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcch
Q 043311 97 LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176 (257)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~ 176 (257)
|...|++++|.++|+...+.. +.+...|..+...+.+.|++++|...|++..+.. +.+...+..+...+...|+
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~---- 174 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGM---- 174 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC----
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCC----
Confidence 899999999999999988753 3467889999999999999999999999988763 4478889999999999554
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 177 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
+++|...|+...+.. +.+..++..+...|...|++++|.+.+++..+.
T Consensus 175 -~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 175 -LDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp -CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999987642 335778999999999999999999999999875
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.6e-09 Score=83.34 Aligned_cols=198 Identities=14% Similarity=0.040 Sum_probs=149.9
Q ss_pred hhhcccCCCCccchhhcccCCCCCCcccc-cc--ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHH
Q 043311 32 QRSLSSSSDQPTKKYVNTKSKLPPPYDPF-KK--VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEA 106 (257)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~--~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a 106 (257)
......+....+...+.+.....|+.... .. ..+...|++++|.+.|+.+.+.... +.. ..+...|...|++++|
T Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 124 (252)
T 2ho1_A 45 LGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEA 124 (252)
T ss_dssp HHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHH
Confidence 34455666666666655443334432221 11 6788999999999999999875432 222 2477888999999999
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHH
Q 043311 107 LQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185 (257)
Q Consensus 107 ~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~ 185 (257)
.++|+...+.+..| +...|..+...|...|++++|...|++..+.. +.+...|..+...+...|+ +++|..++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~-----~~~A~~~~ 198 (252)
T 2ho1_A 125 YQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKERE-----YVPARQYY 198 (252)
T ss_dssp HHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC-----HHHHHHHH
T ss_pred HHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCC-----HHHHHHHH
Confidence 99999998844455 46788889999999999999999999988764 3468889999999999555 99999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043311 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEA 238 (257)
Q Consensus 186 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 238 (257)
+...+. .+.+...+..+...+.+.|+.++|.++++++.+. .|+...+..+
T Consensus 199 ~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~ 248 (252)
T 2ho1_A 199 DLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQEF 248 (252)
T ss_dssp HHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHHH
T ss_pred HHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHHH
Confidence 998864 2346678888999999999999999999999875 3554444333
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-08 Score=81.77 Aligned_cols=184 Identities=9% Similarity=-0.004 Sum_probs=113.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHH-----------
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDV-VAHTAV----------- 128 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l----------- 128 (257)
..+...|+++.|.+.++.+.+.... +.. ..+...|...|++++|.+.|+...+.. |+. ..+..+
T Consensus 63 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 140 (327)
T 3cv0_A 63 LTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLN 140 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHH
Confidence 4455556666666666655553211 111 124555556666666666666655432 211 122221
Q ss_pred ---HH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043311 129 ---IE-AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204 (257)
Q Consensus 129 ---i~-~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 204 (257)
-. .+...|++++|...|++..+.. +.+...+..+...+...|+ +++|.++++...+.. +.+...|..+.
T Consensus 141 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~-----~~~A~~~~~~~~~~~-~~~~~~~~~l~ 213 (327)
T 3cv0_A 141 VQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNN-----YDSAAANLRRAVELR-PDDAQLWNKLG 213 (327)
T ss_dssp -----CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 11 2445556666666666665542 3356777777777777444 888888888877542 23567788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 205 EAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
..+...|++++|...++++.+.. +.+...+..+...+...|+.+.|..+|+
T Consensus 214 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 264 (327)
T 3cv0_A 214 ATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLV 264 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 88888888888888888887653 3357778888888888888888887775
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.14 E-value=3.1e-11 Score=101.34 Aligned_cols=183 Identities=10% Similarity=0.041 Sum_probs=68.3
Q ss_pred CCCCccchhhcccCCCCCCcccccc-ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 043311 38 SSDQPTKKYVNTKSKLPPPYDPFKK-VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDK 116 (257)
Q Consensus 38 ~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 116 (257)
++.+.+.++..+.+. |+ .-+.+ .++.+.|++++|.+.|.+.. -......++.++...|++++|..+++..++.
T Consensus 17 ~~ld~A~~fae~~~~--~~-vWs~La~A~l~~g~~~eAIdsfika~---D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 17 GNLDRAYEFAERCNE--PA-VWSQLAKAQLQKGMVKEAIDSYIKAD---DPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCC--hH-HHHHHHHHHHHcCCHHHHHHHHHcCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 445566666555521 22 22233 88899999999999997642 1223335888999999999999977766663
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC
Q 043311 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196 (257)
Q Consensus 117 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 196 (257)
.+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+-..|.. .|.+++|..+|..+
T Consensus 91 --~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~-----~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 91 --ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYD-----EKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp --------------------CHHHHTTTTT-------CC---------------------CTTTHHHHHHHT--------
T ss_pred --CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHH-----cCCHHHHHHHHHHh--------
Confidence 5668889999999999999999988884 4788899999999999 66699999999976
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 197 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
..|..+..++++.|++++|.+.++++ -+..+|..++.+|...|+++.|+...
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~ 200 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCG 200 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTT
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHH
Confidence 48999999999999999999999998 37899999999999999999997654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.8e-08 Score=78.67 Aligned_cols=182 Identities=12% Similarity=0.014 Sum_probs=137.7
Q ss_pred ccccC----CCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043311 63 VVDEE----PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134 (257)
Q Consensus 63 ~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 134 (257)
..+.. .+++++|.+.|+...+.+.......+-..|.. .+++++|.+.|+...+.+ +...+..+-..|..
T Consensus 46 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 46 VLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHD 122 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHc
Confidence 55566 88999999999988887732222346667777 889999999998888764 67788888888888
Q ss_pred ----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-
Q 043311 135 ----AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR- 209 (257)
Q Consensus 135 ----~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~- 209 (257)
.+++++|...|++..+.+ +...+..+-..+... .+..+.+++|...|+...+.+ +...+..+-..|..
T Consensus 123 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~-~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g 195 (273)
T 1ouv_A 123 GKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAG-RGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHG 195 (273)
T ss_dssp CSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT-SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred CCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 889999999998888765 566666666666651 111334899999998887654 56677778888888
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----CCchhhHHhhhcC
Q 043311 210 ---AQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG----QGFRGVINILFGK 257 (257)
Q Consensus 210 ---~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~~~~l~~k 257 (257)
.+++++|...|++..+.+- ...+..+-..+.. .|+.++|...|+|
T Consensus 196 ~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 196 EGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKK 247 (273)
T ss_dssp CSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 8899999999999888752 5667777777777 8888888888753
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-08 Score=77.47 Aligned_cols=157 Identities=13% Similarity=0.004 Sum_probs=132.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA- 170 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~- 170 (257)
.+...+...|++++|.++|+...+.. +.+...|..+...|...|++++|...|++..+.. +.+..+|..+...+...
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 90 (225)
T 2vq2_A 13 QLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRL 90 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhc
Confidence 36778899999999999999988753 3357889999999999999999999999998763 44778899999999985
Q ss_pred cCCcchhHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchh
Q 043311 171 ADGNAKILGDAQKYLMEMVGKGMRPN-AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249 (257)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 249 (257)
|+ +++|..+++.+.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+.+
T Consensus 91 ~~-----~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 91 NR-----PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp CC-----HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred Cc-----HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 54 9999999999987433444 5678888999999999999999999998763 335788889999999999999
Q ss_pred hHHhhhc
Q 043311 250 VINILFG 256 (257)
Q Consensus 250 ~~~~l~~ 256 (257)
.|..+|+
T Consensus 165 ~A~~~~~ 171 (225)
T 2vq2_A 165 DADYYFK 171 (225)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998875
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-08 Score=82.51 Aligned_cols=184 Identities=14% Similarity=-0.009 Sum_probs=146.3
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC-CcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT-NNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+...|++++|.+.|+.+.+.... +... .+-.++...|++++|...|+...+.. +-+...|..+-..|...|++++
T Consensus 11 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 89 (359)
T 3ieg_A 11 KKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDE 89 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHH
Confidence 4566789999999999999875322 2222 47778889999999999999988752 2356889999999999999999
Q ss_pred HHHHHHHHHHCCCCC----CHHHHHHH------------HHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043311 141 ALRVFMRMLASGVAP----NAYTYAVL------------IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204 (257)
Q Consensus 141 a~~~~~~m~~~g~~~----~~~t~~~l------------l~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 204 (257)
|...|++..+. .| +...+..+ ...+.. .|.+++|.++++...+.. +.+...+..+.
T Consensus 90 A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-----~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 161 (359)
T 3ieg_A 90 AEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFD-----GADYTAAITFLDKILEVC-VWDAELRELRA 161 (359)
T ss_dssp HHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 99999999875 34 44444444 356667 444999999999987642 34677888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 205 EAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
..+...|++++|...+++..... +.+...+..+...+...|+.+.|...|+
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999998764 4577888899999999999999988875
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-08 Score=75.42 Aligned_cols=151 Identities=18% Similarity=0.088 Sum_probs=64.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcc
Q 043311 96 ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~ 175 (257)
.+...|++++|.+.|+...+.. +.+...|..+...+...|++++|...|++..+.. +.+...|..+...+...|+
T Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~--- 91 (186)
T 3as5_A 17 SHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQK--- 91 (186)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC---
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcC---
Confidence 3444444444444444443321 1233444444444444444444444444444331 2233444444444444222
Q ss_pred hhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 176 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
+++|.++++..... .+.+...+..+...+...|++++|.+++++..+.. ..+...+..+...+...|+.+.|..+|
T Consensus 92 --~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 92 --YDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp --HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --HHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444444332 11233344444444444444444444444444332 123344444444444444444444443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.9e-10 Score=95.83 Aligned_cols=226 Identities=11% Similarity=-0.009 Sum_probs=166.6
Q ss_pred ccchhhhhhhhcccCCCCccchhhcccCCCCCCcccccc--ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHh
Q 043311 24 NTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK--VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSK 99 (257)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~ 99 (257)
...+..........+....+...+.+.....|+...+.. ..+...|+++.|.+.++...+.... +.. ..+...|..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH
Confidence 334444455556667766666665544334444111221 7778899999999999998875432 222 247778889
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHH
Q 043311 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179 (257)
Q Consensus 100 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~ 179 (257)
.|++++|...|+...+.. +.+...|..+...|...|++++|..+|++..+.. +.+..+|..+...+...|+ ++
T Consensus 317 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~-----~~ 389 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKND-----FD 389 (514)
T ss_dssp TTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTC-----HH
T ss_pred hCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCC-----HH
Confidence 999999999999988753 2356788889999999999999999999988753 3356788888888988444 99
Q ss_pred HHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhH
Q 043311 180 DAQKYLMEMVGKG-MRPN----AGTYTAVFEAFVR---AQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251 (257)
Q Consensus 180 ~a~~~~~~m~~~g-~~p~----~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~ 251 (257)
+|...|+.+.... -.++ ...|..+...+.. .|++++|...++++.+.. +.+..++..+...+...|+.+.|
T Consensus 390 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 468 (514)
T 2gw1_A 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEA 468 (514)
T ss_dssp HHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHH
Confidence 9999998876421 1112 3478888899999 999999999999988753 34677888888899999999999
Q ss_pred HhhhcC
Q 043311 252 NILFGK 257 (257)
Q Consensus 252 ~~l~~k 257 (257)
..+|++
T Consensus 469 ~~~~~~ 474 (514)
T 2gw1_A 469 ITLFEE 474 (514)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888763
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-07 Score=75.24 Aligned_cols=178 Identities=12% Similarity=0.009 Sum_probs=144.5
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS---- 134 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~---- 134 (257)
..+...|++++|.+.|+...+.+.......+-..|.. .+++++|.+.|+...+.+ +...+..+-..|..
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~ 90 (273)
T 1ouv_A 14 AKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGV 90 (273)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCc
Confidence 4566778999999999998885433333356777888 899999999999988875 77888888888988
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----ccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-
Q 043311 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA----AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR- 209 (257)
Q Consensus 135 ~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~----~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~- 209 (257)
.+++++|...|++..+.+ +...+..+-..|.. .++ +++|.+.|+...+.+ +...+..+-..|..
T Consensus 91 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~-----~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 159 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRD-----FKKAVEYFTKACDLN---DGDGCTILGSLYDAG 159 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCC-----HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccC-----HHHHHHHHHHHHhcC---cHHHHHHHHHHHHcC
Confidence 999999999999988875 67788888777776 555 999999999988765 56677778788888
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----CCchhhHHhhhcC
Q 043311 210 ---AQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG----QGFRGVINILFGK 257 (257)
Q Consensus 210 ---~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~~~~l~~k 257 (257)
.+++++|...|++..+.+ +...+..+-..+.. .++.+.|...|+|
T Consensus 160 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~ 211 (273)
T 1ouv_A 160 RGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSK 211 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence 899999999999998875 45677777778888 8999999888753
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=3.3e-08 Score=77.78 Aligned_cols=183 Identities=13% Similarity=-0.047 Sum_probs=97.8
Q ss_pred ccCCCCHHHHHHHHHHHHhCCCCCc--HH----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043311 65 DEEPTDPRNLQEIFHKMRTEGLTNN--AV----KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG 138 (257)
Q Consensus 65 ~~~~~~~~~a~~~~~~m~~~~~~p~--~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 138 (257)
....|+++.|.+.|+.+.+.....+ .. .+...+...|++++|...|+...+.. +.+..+|..+-..|...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 3344666666666666665422111 11 24555556666666666666655532 12455666666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043311 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 218 (257)
++|...|++..+.. +.+...|..+...+...|+ +++|...|+...+. .|+...+...+..+...|++++|..
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~ 165 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGR-----DKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKE 165 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHH
Confidence 66666666665532 2244555666666666333 66666666655542 2333333334444444555555555
Q ss_pred HHHHHHHCC-------------------------------CCCC-----HHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 219 LLQQMKAKG-------------------------------FVPD-----EKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 219 ~~~~m~~~g-------------------------------~~p~-----~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
.+++..... ..|+ ...+..+-..+...|+.+.|..+|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 239 (275)
T 1xnf_A 166 VLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFK 239 (275)
T ss_dssp HHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 554443321 1111 3556666667777777777777665
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.9e-09 Score=90.69 Aligned_cols=180 Identities=13% Similarity=-0.037 Sum_probs=149.6
Q ss_pred CCCCHHHHHHHHHHHHh-----CCCCCc-------HH----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043311 67 EPTDPRNLQEIFHKMRT-----EGLTNN-------AV----KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130 (257)
Q Consensus 67 ~~~~~~~a~~~~~~m~~-----~~~~p~-------~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 130 (257)
+.|+++.|..+|+.+.+ ..-.|+ .. .+...+...|++++|..+|+...+.. |+...|..+..
T Consensus 201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~ 278 (514)
T 2gw1_A 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMAL 278 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHH
Confidence 58999999999999988 322222 11 36778889999999999999998864 44888999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 043311 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210 (257)
Q Consensus 131 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 210 (257)
+|...|++++|...|++..+.. +.+...|..+...+...|+ +++|...|+...+.. +.+...+..+...+...
T Consensus 279 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 279 IMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN-----YDQAGKDFDKAKELD-PENIFPYIQLACLAYRE 351 (514)
T ss_dssp HHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC-----TTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTT
T ss_pred HHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHc
Confidence 9999999999999999998763 4467889999999999555 999999999988753 23567888899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 211 QKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 211 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
|++++|..+++++.+.. +.+...+..+...+...|+.+.|..+|+
T Consensus 352 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 352 NKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999998753 3356788889999999999999998875
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.02 E-value=8.9e-08 Score=78.01 Aligned_cols=221 Identities=11% Similarity=0.027 Sum_probs=162.6
Q ss_pred hhhhhhhhcccCCCCccchhhcccCCCCC---Cccccc---------------cccccCCCCHHHHHHHHHHHHhCCCC-
Q 043311 27 VNATLQRSLSSSSDQPTKKYVNTKSKLPP---PYDPFK---------------KVVDEEPTDPRNLQEIFHKMRTEGLT- 87 (257)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~~~~---------------~~~~~~~~~~~~a~~~~~~m~~~~~~- 87 (257)
+..+.......+....+...+.+.....| +..... ...+...|+++.|.+.++.+.+....
T Consensus 74 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 153 (359)
T 3ieg_A 74 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD 153 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 34444445555666666666555555555 221111 14667899999999999999875322
Q ss_pred CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH---
Q 043311 88 NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL--- 163 (257)
Q Consensus 88 p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~l--- 163 (257)
+.. ..+..++...|++++|...|+...+.. +.+..+|..+-..|...|++++|...|++..+.. +.+...+..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~ 231 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV 231 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHH
Confidence 222 247888899999999999999998763 3467899999999999999999999999998753 2234433322
Q ss_pred ---------HHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 043311 164 ---------IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG-----TYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229 (257)
Q Consensus 164 ---------l~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 229 (257)
...+.+ .|.+++|...++...+. .|+.. .+..+-..+.+.|++++|...+++..+.. +
T Consensus 232 ~~~~~~~~~a~~~~~-----~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~ 303 (359)
T 3ieg_A 232 KKLNKLIESAEELIR-----DGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-P 303 (359)
T ss_dssp HHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-c
Confidence 445677 44599999999998864 24432 34556788999999999999999998863 3
Q ss_pred CCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 230 PDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 230 p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.+...+..+-..+...|+.+.|...|++
T Consensus 304 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 331 (359)
T 3ieg_A 304 DNVNALKDRAEAYLIEEMYDEAIQDYEA 331 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4788999999999999999999988863
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.4e-08 Score=74.23 Aligned_cols=160 Identities=18% Similarity=0.020 Sum_probs=132.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~ 171 (257)
.+-..+.+.|++++|...|+...+.. +-+...|..+-.++.+.|++++|...|++..+.. +-+...|..+-..+...+
T Consensus 10 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 87 (217)
T 2pl2_A 10 RLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALY 87 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhh
Confidence 35667889999999999999988752 2357788899999999999999999999998763 446788888888888830
Q ss_pred CC------cchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 043311 172 DG------NAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244 (257)
Q Consensus 172 ~~------~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 244 (257)
.. ..|++++|...|+...+. .| +...|..+-..+...|++++|...|++..+.. .+...+..+-..+..
T Consensus 88 ~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~ 163 (217)
T 2pl2_A 88 RQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLS 163 (217)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHH
T ss_pred hhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHH
Confidence 00 006699999999998764 34 46778888899999999999999999999887 788999999999999
Q ss_pred CCchhhHHhhhcC
Q 043311 245 QGFRGVINILFGK 257 (257)
Q Consensus 245 ~g~~~~~~~l~~k 257 (257)
.|+.+.|...|++
T Consensus 164 ~g~~~~A~~~~~~ 176 (217)
T 2pl2_A 164 MGRLDEALAQYAK 176 (217)
T ss_dssp HTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 9999999988763
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.01 E-value=6.6e-09 Score=89.89 Aligned_cols=218 Identities=11% Similarity=-0.016 Sum_probs=162.9
Q ss_pred hhhcccCCCCccchhhcccCCCCCCcccccc--ccccCCCCHHHHHHHHHHHHhCCCC-CcHH-HHHHHHHhcCChHHHH
Q 043311 32 QRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK--VVDEEPTDPRNLQEIFHKMRTEGLT-NNAV-KMFDALSKDGLTHEAL 107 (257)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~-~ll~~~~~~~~~~~a~ 107 (257)
......+....+...+.+.....|+...+.. ..+...|+++.|.+.|+...+.... +... .+...+...|++++|.
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 3444556666666665554445555233322 7888999999999999999875422 2222 4778889999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHH
Q 043311 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187 (257)
Q Consensus 108 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~ 187 (257)
+.|+...+.. +.+...|..+-..|...|++++|...|++..+.. +.+...|..+...+...|+ +++|.+.|+.
T Consensus 331 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~ 403 (537)
T 3fp2_A 331 EDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGD-----FDTAIKQYDI 403 (537)
T ss_dssp HHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC-----HHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCC-----HHHHHHHHHH
Confidence 9999998753 2346789999999999999999999999998763 4467788899999999555 9999999998
Q ss_pred HHhCC-----CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHH
Q 043311 188 MVGKG-----MRPNAGTYTAVFEAFVRA----------QKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252 (257)
Q Consensus 188 m~~~g-----~~p~~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~ 252 (257)
..+.. .......+......+... |++++|...|++..+.. +.+...+..+-..+...|+.+.|.
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAI 482 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 76421 111222344445667777 99999999999998763 346788889999999999999999
Q ss_pred hhhcC
Q 043311 253 ILFGK 257 (257)
Q Consensus 253 ~l~~k 257 (257)
.+|++
T Consensus 483 ~~~~~ 487 (537)
T 3fp2_A 483 ELFED 487 (537)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88863
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=5.4e-09 Score=83.71 Aligned_cols=190 Identities=13% Similarity=0.045 Sum_probs=145.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCC------CCCcHH----HHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEG------LTNNAV----KMFDALSKDGLTHEALQLFAQIKDK------GHMP-DVVAH 125 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~------~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~ 125 (257)
..+...|+++.|..+|+.+.+.. ..|... .+-..|...|++++|..+|+...+. +-.| ...+|
T Consensus 35 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 114 (311)
T 3nf1_A 35 IQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATL 114 (311)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 67788999999999999988731 122222 3777888999999999999988754 2223 45688
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC------C
Q 043311 126 TAVIEAYASAGQGKEALRVFMRMLAS------GV-APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK------G 192 (257)
Q Consensus 126 ~~li~~~~~~~~~~~a~~~~~~m~~~------g~-~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~------g 192 (257)
..+-..|...|++++|...|++..+. +- ......+..+...+...| ++++|.++|+...+. +
T Consensus 115 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 115 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG-----KYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT-----CHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHhCC
Confidence 89999999999999999999998764 22 234567788888888844 499999999988653 2
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---------------------------------------------
Q 043311 193 MRPN-AGTYTAVFEAFVRAQKVDEARGLLQQMKAK--------------------------------------------- 226 (257)
Q Consensus 193 ~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------------------------------------------- 226 (257)
..|+ ..++..+...|...|++++|.++++++.+.
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 269 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKA 269 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-----
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhh
Confidence 2332 346888889999999999999999998852
Q ss_pred ---CCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 227 ---GFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 227 ---g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.-..+..++..+-..+...|+.+.|..+|++
T Consensus 270 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 303 (311)
T 3nf1_A 270 CKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA 303 (311)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1122456677888899999999999998863
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-07 Score=70.37 Aligned_cols=155 Identities=13% Similarity=0.048 Sum_probs=104.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+.+.|++++|.+.|++..+..- .+.. ..+-.+|.+.|++++|...+....... .-+...+..+-..+...++++.
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 91 (184)
T 3vtx_A 13 DKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMIDEKQA 91 (184)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHcCCHHH
Confidence 455667788888888887776421 1111 135667777888888888777776542 2245566666677777788888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 220 (257)
+...+.+..+.. +-+...+..+-..+.+.|+ +++|.+.|++..+.. +-+...|..+-..|.+.|++++|.+.|
T Consensus 92 a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~-----~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 164 (184)
T 3vtx_A 92 AIDALQRAIALN-TVYADAYYKLGLVYDSMGE-----HDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYF 164 (184)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHhCC-----chhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 888887776642 3356677777777777444 888888887776531 224566777777788888888888888
Q ss_pred HHHHH
Q 043311 221 QQMKA 225 (257)
Q Consensus 221 ~~m~~ 225 (257)
++..+
T Consensus 165 ~~al~ 169 (184)
T 3vtx_A 165 KKALE 169 (184)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1e-07 Score=70.03 Aligned_cols=156 Identities=10% Similarity=0.066 Sum_probs=127.5
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNA--VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+...|++++|.+.++.+.+....... ..+...+...|++++|.++|+...+.. +.+...|..+...+...|++++
T Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~ 94 (186)
T 3as5_A 16 ISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDL 94 (186)
T ss_dssp HHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHH
Confidence 4566789999999999988764322111 247778899999999999999988752 3467889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 220 (257)
|...|++..+.. +.+...+..+...+...|+ +++|.++++...+.. +.+...+..+...+...|++++|.+.+
T Consensus 95 A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~-----~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 95 AVPLLIKVAEAN-PINFNVRFRLGVALDNLGR-----FDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCc-----HHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999998763 4578888899999999554 999999999987642 335688999999999999999999999
Q ss_pred HHHHHC
Q 043311 221 QQMKAK 226 (257)
Q Consensus 221 ~~m~~~ 226 (257)
++..+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 998754
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-08 Score=79.93 Aligned_cols=182 Identities=13% Similarity=-0.013 Sum_probs=96.8
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+...|++++|...|+...+.... +.. ..+...|...|++++|.+.|+...+.. +.+...|..+-.+|.+.|++++
T Consensus 51 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~ 129 (275)
T 1xnf_A 51 VLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKL 129 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHH
Confidence 4455566666666666665553211 111 134555566666666666666655531 1234556666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC----------------------------CcchhHHHHHHHHHHHHhCC
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD----------------------------GNAKILGDAQKYLMEMVGKG 192 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~----------------------------~~~~~~~~a~~~~~~m~~~g 192 (257)
|...|+++.+. .|+...+...+..+...|+ ...+..+.|...++.....
T Consensus 130 A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~- 206 (275)
T 1xnf_A 130 AQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATD- 206 (275)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCS-
T ss_pred HHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcc-
Confidence 66666666543 2332222223333333111 0011134444444443322
Q ss_pred CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHh
Q 043311 193 MRPN-----AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINI 253 (257)
Q Consensus 193 ~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 253 (257)
.|+ ...|..+...|.+.|++++|...|++..... |+. +.....++...|..+.+..
T Consensus 207 -~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~ 267 (275)
T 1xnf_A 207 -NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQD 267 (275)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC--
T ss_pred -cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHH
Confidence 121 4678888899999999999999999998753 532 2222345556666665544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-07 Score=75.68 Aligned_cols=176 Identities=11% Similarity=0.001 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHhCCCCCcH----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCChHHHHHHH
Q 043311 72 RNLQEIFHKMRTEGLTNNA----VKMFDALSKDGLTHEALQLFAQIKDKGHMPD-VV-AHTAVIEAYASAGQGKEALRVF 145 (257)
Q Consensus 72 ~~a~~~~~~m~~~~~~p~~----~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~~~~~~a~~~~ 145 (257)
++|..+|++..+. +.|+. ..+...+.+.|++++|..+|+...+. .|+ .. .|..+...+.+.|++++|..+|
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 157 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8999999998873 12332 24677788899999999999999874 454 33 7999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 146 ~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
++..+.+ +.+...|.......... .|..+.|.++|+...+. .+-+...|..++..+.+.|+.++|..+|++...
T Consensus 158 ~~a~~~~-p~~~~~~~~~a~~~~~~----~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 158 KKAREDA-RTRHHVYVTAALMEYYC----SKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHTST-TCCTHHHHHHHHHHHHT----SCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9988763 33445554333332210 24489999999987753 123567888889999999999999999999998
Q ss_pred CC-CCC--CHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 226 KG-FVP--DEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 226 ~g-~~p--~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
.. +.| +...|..++......|+.+.+..+++
T Consensus 232 ~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 73 455 46778888888888999998888765
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.6e-08 Score=77.46 Aligned_cols=158 Identities=11% Similarity=0.064 Sum_probs=130.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCC----HHHHHHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG--VAPN----AYTYAVLIK 165 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~----~~t~~~ll~ 165 (257)
.+-..+...|++++|..+|+...+.. .+...|..+-.+|...|++++|...|++..+.. ..++ ..+|..+..
T Consensus 10 ~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 87 (258)
T 3uq3_A 10 AEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGN 87 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHH
Confidence 35678889999999999999998876 788999999999999999999999999988642 1222 588888999
Q ss_pred HHHhccCCcchhHHHHHHHHHHHHhCC------------------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 043311 166 GLAAAADGNAKILGDAQKYLMEMVGKG------------------------MRP-NAGTYTAVFEAFVRAQKVDEARGLL 220 (257)
Q Consensus 166 ~~~~~~~~~~~~~~~a~~~~~~m~~~g------------------------~~p-~~~~~~~li~~~~~~~~~~~a~~~~ 220 (257)
.+...|+ +++|...|+...... ..| +...|..+...+...|++++|...|
T Consensus 88 ~~~~~~~-----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 162 (258)
T 3uq3_A 88 AYHKLGD-----LKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAY 162 (258)
T ss_dssp HHHHTTC-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHccc-----HHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999555 888888888877521 223 3456778888999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 221 QQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 221 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
++..+.. +.+...+..+-..+...|+.+.|...|++
T Consensus 163 ~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 163 TEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9998764 34678899999999999999999988753
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.94 E-value=9.4e-08 Score=82.19 Aligned_cols=188 Identities=11% Similarity=-0.048 Sum_probs=151.2
Q ss_pred ccccCCCCH-HHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----
Q 043311 63 VVDEEPTDP-RNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA---- 135 (257)
Q Consensus 63 ~~~~~~~~~-~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---- 135 (257)
..+...|++ ++|.+.|++..+..-. +.. ..+-.+|.+.|++++|.+.|+...+. .|+...|..+-..|...
T Consensus 110 ~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~ 187 (474)
T 4abn_A 110 KALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDS 187 (474)
T ss_dssp HHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSC
T ss_pred HHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCC
Confidence 778889999 9999999998875322 222 24778889999999999999999885 47778899999999999
Q ss_pred -----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----cCCcchhHHHHHHHHHHHHhCCCCC----CHHHHHH
Q 043311 136 -----GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA----ADGNAKILGDAQKYLMEMVGKGMRP----NAGTYTA 202 (257)
Q Consensus 136 -----~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~----~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~ 202 (257)
|++++|...|++..+.. +-+...|..+-..|... +. +.|++++|.+.|+...+. .| +...|..
T Consensus 188 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 263 (474)
T 4abn_A 188 GDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQ-NPKISQQALSAYAQAEKV--DRKASSNPDLHLN 263 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHh--CCCcccCHHHHHH
Confidence 99999999999988763 34678888888888773 11 126699999999998864 34 6788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 203 VFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
+-..|...|++++|.+.|++..+.. +-+...+..+-..+...|..+.+...++|
T Consensus 264 lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 264 RATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998753 23566777888888888888888776543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-08 Score=79.77 Aligned_cols=185 Identities=10% Similarity=-0.044 Sum_probs=126.6
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcH-----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNA-----VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 137 (257)
..+...|+++.|.+.++...+.+-.+.. ..+-..+.+.|++++|.+.|+...+.. +.+..+|..+-..|...|+
T Consensus 45 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 123 (272)
T 3u4t_A 45 VCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGN 123 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccC
Confidence 6677788888888888888774433332 246677778888888888888777642 2245678888888888888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCC---
Q 043311 138 GKEALRVFMRMLASGVAPNAYTYAVLI-KGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQK--- 212 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~~~~~~t~~~ll-~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~--- 212 (257)
+++|...|++..+.. +.+...|..+- ..+.. + .+++|.+.|+...+. .| +...+..+...+...|+
T Consensus 124 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~ 194 (272)
T 3u4t_A 124 FPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN-K-----EYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTK 194 (272)
T ss_dssp HHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT-T-----CHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCS
T ss_pred HHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH-H-----HHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchh
Confidence 888888888777652 33556666665 44433 2 488888888887753 23 35666667777777777
Q ss_pred HHHHHHHHHHHHHC-CCCCC------HHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 213 VDEARGLLQQMKAK-GFVPD------EKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 213 ~~~a~~~~~~m~~~-g~~p~------~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
+++|...+++..+. .-.|+ ...+..+-..+...|+.+.|..+|+|
T Consensus 195 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 246 (272)
T 3u4t_A 195 QGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN 246 (272)
T ss_dssp SCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777777654 12233 24666677778888888888887753
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-07 Score=73.72 Aligned_cols=185 Identities=8% Similarity=-0.010 Sum_probs=141.0
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CC-cHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCh
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TN-NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPD--VVAHTAVIEAYASAGQG 138 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p-~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~ 138 (257)
..+...|+++.|...|+...+..- .+ ....+..+|...|++++|.+.|+...+.+..++ ...|..+-..|...|++
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~ 90 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQD 90 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccH
Confidence 566789999999999999988532 23 233577899999999999999999988542232 23488999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 043311 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEAR 217 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~ 217 (257)
++|...|++..+.. +.+..+|..+-..+...|+ +++|.+.|+...+. .| +...|..+-..+...+++++|.
T Consensus 91 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 91 SLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGN-----FPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTC-----HHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccC-----HHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998763 3366889999999999555 99999999988765 34 4455665553555566999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhcCCc---hhhHHhhhc
Q 043311 218 GLLQQMKAKGFVPDEKAVKEALIDKRGQGF---RGVINILFG 256 (257)
Q Consensus 218 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---~~~~~~l~~ 256 (257)
+.|++..+.. +.+...+..+-..+...|. .+.|...|+
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 203 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYE 203 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHH
Confidence 9999998753 2336666667777777776 555665553
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.92 E-value=4.4e-09 Score=82.87 Aligned_cols=189 Identities=13% Similarity=0.062 Sum_probs=139.1
Q ss_pred cccCCCCHHHHHHHHHHHHhC-----C-CCCcHH----HHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHHHH
Q 043311 64 VDEEPTDPRNLQEIFHKMRTE-----G-LTNNAV----KMFDALSKDGLTHEALQLFAQIKDK------GHMP-DVVAHT 126 (257)
Q Consensus 64 ~~~~~~~~~~a~~~~~~m~~~-----~-~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~ 126 (257)
.....|+++.|...|++..+. + -.|... .+-..|...|++++|...|++..+. +-.| ...+|.
T Consensus 10 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 10 HSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp ---CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 445678888888888777762 1 123322 3777888999999999999988754 2223 356889
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC------CC
Q 043311 127 AVIEAYASAGQGKEALRVFMRMLAS------G-VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK------GM 193 (257)
Q Consensus 127 ~li~~~~~~~~~~~a~~~~~~m~~~------g-~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~------g~ 193 (257)
.+-..|...|++++|...|++..+. . -+....+|..+-..+...|+ +++|..+|++..+. +-
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK-----AEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC-----HHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999988754 1 12346778888888888444 99999999887653 11
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----------------------------------------------
Q 043311 194 RP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAK---------------------------------------------- 226 (257)
Q Consensus 194 ~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------------------------------------- 226 (257)
.| ...++..+-..|...|++++|..++++..+.
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 23 3457888889999999999999999998753
Q ss_pred --CCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 227 --GFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 227 --g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.-.....++..+-..+...|+.+.|..+|++
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 277 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDC 277 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1122345677788889999999999998863
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=98.92 E-value=7.4e-08 Score=83.26 Aligned_cols=179 Identities=10% Similarity=-0.004 Sum_probs=145.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCcH---------HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 043311 69 TDPRNLQEIFHKMRTEGLTNNA---------VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 69 ~~~~~a~~~~~~m~~~~~~p~~---------~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 139 (257)
|+++.|..+|+.+.+....... ..+-..+...|++++|.+.|+...+. .|+...|..+-..|...|+++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHH
Confidence 4788999999998875432211 12456778899999999999999885 466888999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 219 (257)
+|...|++..+.. +.+..+|..+...+...|+ +++|.+.|+...+.. +-+...|..+...+...|++++|..+
T Consensus 294 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 366 (537)
T 3fp2_A 294 EFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD-----YKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAF 366 (537)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999998764 4468889999999999554 999999999988642 22467888999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 220 LQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 220 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
++++.+.. +.+...+..+-..+...|+.+.|...|++
T Consensus 367 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 367 FNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99998764 34567888889999999999999988753
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.9e-07 Score=64.62 Aligned_cols=127 Identities=18% Similarity=0.189 Sum_probs=101.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~ 171 (257)
.+...+...|++++|..+|+.+.+.. +.+...|..+...+...|++++|..+|+++.+.+ +.+...|..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhc
Confidence 35677888899999999999887653 2357788888888999999999999999988764 446778888888888844
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 172 DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
+ +++|.++++.+.... +.+...+..+...+.+.|++++|...++++...
T Consensus 84 ~-----~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 84 D-----YDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp C-----HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred C-----HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 4 999999998887642 335677888889999999999999999988764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.85 E-value=6.7e-07 Score=66.15 Aligned_cols=157 Identities=14% Similarity=0.118 Sum_probs=130.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~ 171 (257)
.+-..|.+.|++++|.+.|++..+.. +-+...|..+-.+|.+.|++++|...+....... +-+...+..+-..+...+
T Consensus 10 ~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 87 (184)
T 3vtx_A 10 DIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMID 87 (184)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHcC
Confidence 46678899999999999999988752 2367789999999999999999999999988764 346677777777788844
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhH
Q 043311 172 DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~ 251 (257)
+ ++.+...+....... +-+...+..+-..|.+.|++++|.+.|++..+.. +-+...+..+-..+...|+.+.|
T Consensus 88 ~-----~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 88 E-----KQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp C-----HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred C-----HHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 4 999999998877642 3356788888999999999999999999998764 34678899999999999999999
Q ss_pred HhhhcC
Q 043311 252 NILFGK 257 (257)
Q Consensus 252 ~~l~~k 257 (257)
...|+|
T Consensus 161 ~~~~~~ 166 (184)
T 3vtx_A 161 VKYFKK 166 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.85 E-value=2.2e-07 Score=64.27 Aligned_cols=126 Identities=16% Similarity=0.075 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHH
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTA 202 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 202 (257)
..|..+...+...|++++|..+|+++.+.+ +.+...|..+...+...| +++.|..+++.+...+ +.+...+..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~~~~~~-~~~~~~~~~ 74 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQG-----DYDEAIEYYQKALELD-PRSAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHC-CCchHHHHH
Confidence 357788889999999999999999998764 347788888888888844 4999999999987643 335678888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 203 VFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+...+...|++++|.++++++.... ..+...+..+...+...|+.+.|..+|+
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 9999999999999999999998764 3467788889999999999999998875
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.81 E-value=4.7e-07 Score=77.78 Aligned_cols=182 Identities=13% Similarity=0.000 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHhCCCCCcHH---HHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043311 71 PRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLT-HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146 (257)
Q Consensus 71 ~~~a~~~~~~m~~~~~~p~~~---~ll~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 146 (257)
++.+.+.+........ .+.. .+-..|...|++ ++|.+.|++..+.. +-+...|..+-.+|.+.|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566666665554322 1221 356677889999 99999999988752 2247899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhccCCcc----hhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------CCHH
Q 043311 147 RMLASGVAPNAYTYAVLIKGLAAAADGNA----KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA--------QKVD 214 (257)
Q Consensus 147 ~m~~~g~~~~~~t~~~ll~~~~~~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------~~~~ 214 (257)
+..+. .|+...|..+-..+...+.... |++++|.+.|++..+.. +-+...|..+-..|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99875 5777888888888888411001 66999999999987642 23567888899999988 9999
Q ss_pred HHHHHHHHHHHCCC--CCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 215 EARGLLQQMKAKGF--VPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 215 ~a~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
+|...|++..+..- .-+...+..+-..+...|+.+.|...|++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 283 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999998531 03788999999999999999999988863
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.77 E-value=2.7e-06 Score=68.60 Aligned_cols=176 Identities=11% Similarity=0.035 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHhC-CCCCcHH-HHHHHHH-------hcCCh-------HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 043311 72 RNLQEIFHKMRTE-GLTNNAV-KMFDALS-------KDGLT-------HEALQLFAQIKDKGHMP-DVVAHTAVIEAYAS 134 (257)
Q Consensus 72 ~~a~~~~~~m~~~-~~~p~~~-~ll~~~~-------~~~~~-------~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~ 134 (257)
++|..+|++.... +..|+.. .+...+. +.|++ ++|..+|+...+. +.| +...|..+...+.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence 6888899988873 3334333 2333333 45886 8999999999884 234 56689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcC
Q 043311 135 AGQGKEALRVFMRMLASGVAPN-AY-TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV-RAQ 211 (257)
Q Consensus 135 ~~~~~~a~~~~~~m~~~g~~~~-~~-t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-~~~ 211 (257)
.|++++|..+|++..+. .|+ .. .|..+...+.+ .|.+++|..+|+...+.. +++...|........ ..|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~ 183 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARR-----AEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSK 183 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSC
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHH-----hcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcC
Confidence 99999999999999974 454 33 89999998888 455999999999988753 234445544433322 269
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 212 KVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 212 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
+.++|..+|++..+.. +-+...+..+...+.+.|+.+.|..+|++
T Consensus 184 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 228 (308)
T 2ond_A 184 DKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFER 228 (308)
T ss_dssp CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999998752 23678888999999999999999999864
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.3e-06 Score=78.72 Aligned_cols=152 Identities=14% Similarity=0.076 Sum_probs=74.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~ 171 (257)
+-..|.+.|++++|.+.|++..+. .| +...|+.+=.+|.+.|++++|...|++..+.+ +-+...|..+-..+...|
T Consensus 15 LG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~~~g 91 (723)
T 4gyw_A 15 LANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 91 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 334445555555555555555442 23 23455555555555555555555555554431 123445555555555522
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhh
Q 043311 172 DGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 250 (257)
+ +++|.+.|++..+. .| +...|+.+-..|...|++++|.+.|++..+.. .-+...+..+...+...|+.+.
T Consensus 92 ~-----~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 92 D-----VQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp C-----HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred C-----HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 2 55555555554432 22 23445555555555555555555555555432 1134445555555555555555
Q ss_pred HHhhh
Q 043311 251 INILF 255 (257)
Q Consensus 251 ~~~l~ 255 (257)
|++.|
T Consensus 164 A~~~~ 168 (723)
T 4gyw_A 164 YDERM 168 (723)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.4e-07 Score=74.05 Aligned_cols=161 Identities=15% Similarity=0.035 Sum_probs=125.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------C-CCCCH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDK-------GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS------G-VAPNA 157 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g-~~~~~ 157 (257)
.+...+...|++++|..+|++..+. .......++..+-..|...|++++|...|++..+. + .....
T Consensus 32 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 111 (311)
T 3nf1_A 32 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVA 111 (311)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence 3677888999999999999998763 22334567888999999999999999999998754 2 23345
Q ss_pred HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----
Q 043311 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK------GMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAK---- 226 (257)
Q Consensus 158 ~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---- 226 (257)
.+|..+...+...|+ +++|..+|++..+. +-.| ....+..+-..+...|++++|.+++++..+.
T Consensus 112 ~~~~~l~~~~~~~g~-----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 112 ATLNNLAVLYGKRGK-----YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp HHHHHHHHHHHTTTC-----HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCc-----HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 778888888888544 99999999987753 2223 3456888889999999999999999999864
Q ss_pred --CCCC-CHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 227 --GFVP-DEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 227 --g~~p-~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
+-.| ...++..+...+...|+.+.|..+|++
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 220 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKE 220 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2233 345677788889999999999988753
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.4e-06 Score=66.78 Aligned_cols=85 Identities=12% Similarity=-0.037 Sum_probs=39.7
Q ss_pred cccCCCCHHHHHHHHHHHHhCCCCCcHH---HHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChH
Q 043311 64 VDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 64 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~ 139 (257)
.+...|++++|.+.|....+..-.++.. .+-.++.+.|++++|.+.|+...+. .| +...|..+-.+|...|+++
T Consensus 16 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~ 93 (228)
T 4i17_A 16 DALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAAYRDMKNNQ 93 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHcccHH
Confidence 3444555555555555555433212211 1334444555555555555555442 12 2334445555555555555
Q ss_pred HHHHHHHHHHH
Q 043311 140 EALRVFMRMLA 150 (257)
Q Consensus 140 ~a~~~~~~m~~ 150 (257)
+|...|++..+
T Consensus 94 ~A~~~~~~al~ 104 (228)
T 4i17_A 94 EYIATLTEGIK 104 (228)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.64 E-value=4.2e-06 Score=72.68 Aligned_cols=179 Identities=11% Similarity=0.013 Sum_probs=135.6
Q ss_pred CCCHH-------HHHHHHHHHHhCCCCCcHH----HHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHh
Q 043311 68 PTDPR-------NLQEIFHKMRTEGLTNNAV----KMFDALSKDGLTHEALQLFAQIKDKGHMPD--VVAHTAVIEAYAS 134 (257)
Q Consensus 68 ~~~~~-------~a~~~~~~m~~~~~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~ 134 (257)
.|+++ +|..+|++..+. +.|+.. .+...+.+.|++++|..+|+...+. .|+ ...|......+.+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~ 368 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARR 368 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHH
Confidence 68877 899999998862 234422 4677788899999999999999984 454 3589999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 043311 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKG-LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213 (257)
Q Consensus 135 ~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~-~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 213 (257)
.|++++|..+|++..+.. +.+...|...... +...| ..+.|..+|+...+.. +-+...|..++..+.+.|+.
T Consensus 369 ~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~-----~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~ 441 (530)
T 2ooe_A 369 AEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSK-----DKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNED 441 (530)
T ss_dssp HHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTC-----CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCH
T ss_pred hcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcC-----ChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCH
Confidence 999999999999988752 2223333322222 22433 4999999999877531 23578899999999999999
Q ss_pred HHHHHHHHHHHHCC-CCCC--HHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 214 DEARGLLQQMKAKG-FVPD--EKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 214 ~~a~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
++|..+|++....+ ..|+ ...|...+.-....|+.+.+..++.
T Consensus 442 ~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 442 NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 487 (530)
T ss_dssp HHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999874 3332 5578888888888999999888764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.64 E-value=4e-07 Score=71.51 Aligned_cols=158 Identities=16% Similarity=0.126 Sum_probs=122.0
Q ss_pred ccccCCCCHHHHHHHHHHHHhC------CCCCcHH----HHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE------GLTNNAV----KMFDALSKDGLTHEALQLFAQIKDK------GHMP-DVVAH 125 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~ 125 (257)
..+...|+++.|...+....+. +-.|... .+-.+|...|++++|.+.|.+..+. .-.| ...+|
T Consensus 51 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 130 (283)
T 3edt_B 51 LVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQL 130 (283)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 7778899999999999988864 3334332 3778889999999999999988754 1123 35688
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC------C
Q 043311 126 TAVIEAYASAGQGKEALRVFMRMLAS------GVAP-NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK------G 192 (257)
Q Consensus 126 ~~li~~~~~~~~~~~a~~~~~~m~~~------g~~~-~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~------g 192 (257)
..+-..|...|++++|...|++..+. +-.| ...++..+...+...|+ +++|..+|++..+. +
T Consensus 131 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~~l~~~~~~~~~ 205 (283)
T 3edt_B 131 NNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK-----YQDAETLYKEILTRAHEKEFG 205 (283)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHhcCC
Confidence 88999999999999999999998764 1122 45778888889998444 99999998877642 0
Q ss_pred -----------------------------------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 193 -----------------------------------------MRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 193 -----------------------------------------~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
..| ...++..+...|...|++++|..+|++..+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 206 SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112 234678888999999999999999998765
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.61 E-value=2.1e-06 Score=69.07 Aligned_cols=174 Identities=13% Similarity=0.062 Sum_probs=124.2
Q ss_pred HHHHHHHHHhCCCCCcHH---HHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043311 74 LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGH-MPDVVAHTAVIEAYASAGQGKEALRVFMRML 149 (257)
Q Consensus 74 a~~~~~~m~~~~~~p~~~---~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 149 (257)
+...+++....+ .++.. .+-.++...|++++|++++......+- .-+...+-.++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455566555544 22222 366778889999999999998866543 2367889999999999999999999999998
Q ss_pred HCCCCC-----CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043311 150 ASGVAP-----NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 150 ~~g~~~-----~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 224 (257)
+. .| +..+...+..++.....+ .+....|..+|+++.+. .|+..+-..++.++.+.|++++|++.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g-~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATN-KETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHT-CSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 74 66 367777777775443221 23589999999999765 4664455556668999999999999999776
Q ss_pred HC-----CC----CCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 225 AK-----GF----VPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 225 ~~-----g~----~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
+. +. .-|..++..+|......|+ .+.+++
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~ 276 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLT 276 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHH
Confidence 53 11 3356666577766666676 555554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.61 E-value=9.9e-06 Score=70.34 Aligned_cols=176 Identities=11% Similarity=0.029 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHhC-CCCCcHH-HHHHHHHh-------cCChH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043311 72 RNLQEIFHKMRTE-GLTNNAV-KMFDALSK-------DGLTH-------EALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135 (257)
Q Consensus 72 ~~a~~~~~~m~~~-~~~p~~~-~ll~~~~~-------~~~~~-------~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 135 (257)
+.+..+|++.... +..|... .....+.+ .|+++ +|..+|+...+.-.+-+...|..+...+.+.
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 3666778777763 2233332 23444443 68887 8999999988632233588999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH-HHHcC
Q 043311 136 GQGKEALRVFMRMLASGVAPN--AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN-AGTYTAVFEA-FVRAQ 211 (257)
Q Consensus 136 ~~~~~a~~~~~~m~~~g~~~~--~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~-~~~~~ 211 (257)
|++++|..+|++..+. .|+ ...|......+.+ .|.++.|.++|+...+. .|+ ...|...... +...|
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARR-----AEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSK 405 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHH-----hcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcC
Confidence 9999999999999984 554 3588888888888 55599999999998864 232 2333322222 34689
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 212 KVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 212 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
+.++|..+|++..+.. +-+...+..++....+.|+.+.|..+|++
T Consensus 406 ~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 9999999999998753 23578899999999999999999999864
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=98.55 E-value=9.6e-07 Score=73.73 Aligned_cols=214 Identities=9% Similarity=-0.027 Sum_probs=141.7
Q ss_pred cCCCCccchhhcccCCCCCCcccccc---ccccCCCC-HHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHH
Q 043311 37 SSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTD-PRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLF 110 (257)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~-~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~ 110 (257)
.+....+...+.+.-.+.|+....-. .++...|+ +++|...|++..+..-. +.. ..+-.++.+.|++++|+..|
T Consensus 110 ~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~ 189 (382)
T 2h6f_A 110 DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFI 189 (382)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34444444555554455565433322 66667785 88888888888874322 122 13566677788888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCC-cchhHHHHHHHHHHHH
Q 043311 111 AQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG-NAKILGDAQKYLMEMV 189 (257)
Q Consensus 111 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~-~~~~~~~a~~~~~~m~ 189 (257)
+...+.. .-+...|..+-.++.+.|++++|+..|+++.+.+ +-+...|+.+-..+...++. +...++.+.+.|+...
T Consensus 190 ~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al 267 (382)
T 2h6f_A 190 ADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI 267 (382)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence 8887742 2256788888888888899999999998888764 33677888888877773331 2222233356677665
Q ss_pred hCCCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC--------c-hhhHHhhhc
Q 043311 190 GKGMRP-NAGTYTAVFEAFVRAQ--KVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG--------F-RGVINILFG 256 (257)
Q Consensus 190 ~~g~~p-~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g--------~-~~~~~~l~~ 256 (257)
.. .| +...|+.+-..+...| ++++|.+.+.++ ..-..+...+..+...+...| + .+.|..+|+
T Consensus 268 ~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~--~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~ 342 (382)
T 2h6f_A 268 KL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL--QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCE 342 (382)
T ss_dssp HH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 42 34 4567888888888877 688999998887 323445677777777777764 2 467777665
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.55 E-value=4.2e-05 Score=65.70 Aligned_cols=149 Identities=12% Similarity=0.078 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChH
Q 043311 68 PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS----AGQGK 139 (257)
Q Consensus 68 ~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~ 139 (257)
.++++.|...|+...+.|..+-...|-..|.. .++.++|.+.|+...+.| +...+..|=..|.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 45555555555555554332222233344444 455555555555554433 33344444444444 44555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR----AQKVDE 215 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~ 215 (257)
+|..+|++..+.| +...+..+-..|.. |.+..+..++|.+.|+...+.| +...+..|-..|.. .++.++
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~-g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFE-GDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHH-TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHH
Confidence 5555555544443 23333333333332 1111122444444444444332 33344444444443 444444
Q ss_pred HHHHHHHHHHC
Q 043311 216 ARGLLQQMKAK 226 (257)
Q Consensus 216 a~~~~~~m~~~ 226 (257)
|.+.|++..+.
T Consensus 206 A~~~~~~a~~~ 216 (490)
T 2xm6_A 206 SAQWYRKSATS 216 (490)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
Confidence 44444444443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.1e-05 Score=65.76 Aligned_cols=176 Identities=12% Similarity=0.078 Sum_probs=117.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCh
Q 043311 68 PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA-----GQG 138 (257)
Q Consensus 68 ~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----~~~ 138 (257)
.++++.|.++|+...+.|.......+-..|.. .++.++|.+.|+...+.| +...+..+-..|... ++.
T Consensus 236 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~ 312 (490)
T 2xm6_A 236 TQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNR 312 (490)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCH
Confidence 56666666666666665433333334445555 677777777777766653 455566666666665 677
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHH
Q 043311 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR----AQKVD 214 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~ 214 (257)
++|..+|++..+.| +...+..+-..|...|. ....++|.++|+...+.| +...+..|-..|.. .++++
T Consensus 313 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~--~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 384 (490)
T 2xm6_A 313 EQAISWYTKSAEQG---DATAQANLGAIYFRLGS--EEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQ 384 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCC--HHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCC--cccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 78887777777654 44555555555555332 335788888888877653 56677777777777 78889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----CCchhhHHhhhcC
Q 043311 215 EARGLLQQMKAKGFVPDEKAVKEALIDKRG----QGFRGVINILFGK 257 (257)
Q Consensus 215 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~~~~l~~k 257 (257)
+|...|++..+.| +...+..+-..+.. .++.+.|...|+|
T Consensus 385 ~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 385 QAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9999999888876 45666666666666 7888888887753
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.8e-05 Score=60.53 Aligned_cols=147 Identities=13% Similarity=-0.017 Sum_probs=101.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
.-..+.+.|++++|.+.|+...+....++...+..+-.++...|++++|...|++..+.+ +-+...|..+-..+...|+
T Consensus 13 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~ 91 (228)
T 4i17_A 13 EGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYRDMKN 91 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHccc
Confidence 455667788888888888877765433566666667777788888888888888877653 2255677777777777444
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHh
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRPNA-------GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD---EKAVKEALIDK 242 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~t~~~ll~~~ 242 (257)
+++|.+.|+...+.. +-+. ..|..+-..+...|++++|.+.|++..+. .|+ ...+..+-..+
T Consensus 92 -----~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 92 -----NQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLF 163 (228)
T ss_dssp -----HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHH
Confidence 888888888776532 2233 66777777777888888888888887654 454 45555666666
Q ss_pred hcCCch
Q 043311 243 RGQGFR 248 (257)
Q Consensus 243 ~~~g~~ 248 (257)
...|..
T Consensus 164 ~~~~~~ 169 (228)
T 4i17_A 164 YNNGAD 169 (228)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666665
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=5.6e-06 Score=74.64 Aligned_cols=151 Identities=11% Similarity=0.087 Sum_probs=127.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcH----HHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNA----VKMFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQ 137 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~ 137 (257)
..+.+.|++++|.+.|++..+. .|+. ..+-.+|.+.|++++|.+.|++..+. .| +...|+.+=.+|.+.|+
T Consensus 17 ~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~l~~~g~ 92 (723)
T 4gyw_A 17 NIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 92 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 6778899999999999999884 3332 24778899999999999999998874 35 46789999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHH
Q 043311 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEA 216 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a 216 (257)
+++|.+.|++..+.+ +-+...|+.+-..+... |++++|.+.|++..+. .| +...|..+...+...|++++|
T Consensus 93 ~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~-----g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 93 VQGALQCYTRAIQIN-PAFADAHSNLASIHKDS-----GNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHH
Confidence 999999999988753 33678999999999994 4599999999998763 45 457899999999999999999
Q ss_pred HHHHHHHHH
Q 043311 217 RGLLQQMKA 225 (257)
Q Consensus 217 ~~~~~~m~~ 225 (257)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998888764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=3.5e-06 Score=67.44 Aligned_cols=171 Identities=9% Similarity=-0.058 Sum_probs=112.9
Q ss_pred CHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHH
Q 043311 70 DPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDK----GHMPD-VVAHTAVIEAYASAGQGKEALRV 144 (257)
Q Consensus 70 ~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~~~~~~a~~~ 144 (257)
++++|...|... ...|...|++++|.+.|....+. |-.++ ..+|+.+-.+|.+.|++++|...
T Consensus 32 ~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~ 99 (292)
T 1qqe_A 32 KFEEAADLCVQA------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99 (292)
T ss_dssp HHHHHHHHHHHH------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 377777777665 34567788888888888766442 22222 45788888888888888888888
Q ss_pred HHHHHHC----CCCC-CHHHHHHHHHHHHhc-cCCcchhHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCH
Q 043311 145 FMRMLAS----GVAP-NAYTYAVLIKGLAAA-ADGNAKILGDAQKYLMEMVGK----GMRPN-AGTYTAVFEAFVRAQKV 213 (257)
Q Consensus 145 ~~~m~~~----g~~~-~~~t~~~ll~~~~~~-~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~~~~ 213 (257)
|++-.+. |-.. -..+|+.+-..|... |+ +++|...|++..+. +-.+. ..+|+.+-..+.+.|++
T Consensus 100 ~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~-----~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHD-----YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC-----HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 8776542 1100 135677777777773 44 88888888776531 11101 24577777888888888
Q ss_pred HHHHHHHHHHHHCCCCCCH------HHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 214 DEARGLLQQMKAKGFVPDE------KAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 214 ~~a~~~~~~m~~~g~~p~~------~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
++|...|++..+....... ..+..+...+...|+.+.|...|++
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 224 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888888875432221 1456666677788888888877753
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.48 E-value=9.6e-07 Score=73.70 Aligned_cols=189 Identities=14% Similarity=-0.028 Sum_probs=123.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCc------HHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNN------AVKMFDALSKDGLTHEALQLFAQIKDK----GHMP-DVVAHTAVIEA 131 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~------~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~ 131 (257)
..+...|++++|...|+...+.+.... ...+-..|...|++++|...|++..+. +-.| ...+|..+-..
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 556778888888888888887533211 113566777888888888888776542 1112 34567777788
Q ss_pred HHhcCChHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhccCCcchh-----------------HHHHHHHHHHHH
Q 043311 132 YASAGQGKEALRVFMRMLAS----G-VAPNAYTYAVLIKGLAAAADGNAKI-----------------LGDAQKYLMEMV 189 (257)
Q Consensus 132 ~~~~~~~~~a~~~~~~m~~~----g-~~~~~~t~~~ll~~~~~~~~~~~~~-----------------~~~a~~~~~~m~ 189 (257)
|...|++++|...|++..+. + ......+|..+-..+.. .|. ++.|.+.+++..
T Consensus 136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA-----KGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH-----cCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 88888888888888876643 1 11233466666666666 566 777777776654
Q ss_pred h----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 190 G----KGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF-VPD----EKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 190 ~----~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+ .+-.+ ....+..+-..|...|++++|...+++..+..- .++ ...+..+-..+...|+.+.|..+|+
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 2 11111 223667777778888888888888887765310 112 2366667777888888888877765
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=98.47 E-value=9.9e-06 Score=67.59 Aligned_cols=182 Identities=9% Similarity=-0.039 Sum_probs=140.8
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH----HHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV----KMFDALSKDGL-THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~ll~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 137 (257)
..+...|++++|...++...+.. |+.. .+-.++.+.|+ +++|+..|+...+.. .-+...|+.+-.++...|+
T Consensus 105 ~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~ 181 (382)
T 2h6f_A 105 AVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRD 181 (382)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccC
Confidence 45567899999999999998843 3322 36667788996 999999999998852 2257789999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHH
Q 043311 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR-AQKVDEA 216 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~~~a 216 (257)
+++|...|++..+.. +-+...|..+-..+...|+ +++|...|+.+.+.. +-+...|+.+-..+.+ .|..++|
T Consensus 182 ~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~-----~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 182 PSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKL-----WDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp CTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-----CTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 999999999999864 4478899999999998444 899999999988742 2256789989889998 6665777
Q ss_pred -----HHHHHHHHHCCCCCCHHHHHHHHHHhhcCC--chhhHHhhh
Q 043311 217 -----RGLLQQMKAKGFVPDEKAVKEALIDKRGQG--FRGVINILF 255 (257)
Q Consensus 217 -----~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g--~~~~~~~l~ 255 (257)
...|++..... .-+...|..+-..+...| +.+.+...+
T Consensus 255 ~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~ 299 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQL 299 (382)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHH
Confidence 58888887743 225667777777788777 456665544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=7.2e-06 Score=65.63 Aligned_cols=188 Identities=10% Similarity=0.014 Sum_probs=131.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhC----CCCCcHH----HHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE----GLTNNAV----KMFDALSKDGLTHEALQLFAQIKDK----GHMP-DVVAHTAVI 129 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li 129 (257)
..+...|++++|...|....+. |-.+... .+-.+|.+.|++++|...|+...+. |-.. -..+|+.+-
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567789999999999887763 3222211 3777888999999999999877643 2111 135788888
Q ss_pred HHHHhc-CChHHHHHHHHHHHHCC----CCCC-HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCH------
Q 043311 130 EAYASA-GQGKEALRVFMRMLASG----VAPN-AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA------ 197 (257)
Q Consensus 130 ~~~~~~-~~~~~a~~~~~~m~~~g----~~~~-~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~------ 197 (257)
..|... |++++|...|++..+.. -... ..+|..+-..+...|+ +++|...|+...+.......
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-----~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ-----YIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 899996 99999999999877531 1111 3578888888999444 99999999998864322221
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHhh--cCCchhhHHhhhcC
Q 043311 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD------EKAVKEALIDKR--GQGFRGVINILFGK 257 (257)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~------~~t~~~ll~~~~--~~g~~~~~~~l~~k 257 (257)
..|..+..++...|++++|...|++..+. .|+ ...+..+..++. ..+.++.+...|++
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 15677778899999999999999998652 332 123445556664 45667777776653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.40 E-value=4.2e-05 Score=57.57 Aligned_cols=125 Identities=14% Similarity=0.005 Sum_probs=99.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
+-..+...|++++|.+.|+.. +.|+...|..+-..|...|++++|...|++..+.. +.+...|..+-..+...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 455677889999999998876 35688899999999999999999999999888763 4467888888888888444
Q ss_pred CcchhHHHHHHHHHHHHhCC--------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 043311 173 GNAKILGDAQKYLMEMVGKG--------------MRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g--------------~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 227 (257)
+++|.+.|+...+.. ..| ....+..+-..|.+.|++++|...|++..+..
T Consensus 87 -----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 87 -----YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp -----HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred -----HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999887632 111 12567788888999999999999999988754
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.8e-05 Score=61.98 Aligned_cols=160 Identities=11% Similarity=-0.026 Sum_probs=104.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-C-CCHHHHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPD----VVAHTAVIEAYASAGQGKEALRVFMRMLASGV-A-PNAYTYAVLIKG 166 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~-~~~~t~~~ll~~ 166 (257)
.-..+.+.|++++|...|+...+.. |+ ...+..+-.+|.+.|++++|...|++..+..- . .....+..+-..
T Consensus 21 ~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~ 98 (261)
T 3qky_A 21 RAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMC 98 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHH
Confidence 5566777888888888888887652 32 45677777778888888888888888876421 1 123444444455
Q ss_pred HHhccC---CcchhHHHHHHHHHHHHhCCCCCCH-HHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 167 LAAAAD---GNAKILGDAQKYLMEMVGKGMRPNA-GTY-----------------TAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 167 ~~~~~~---~~~~~~~~a~~~~~~m~~~g~~p~~-~~~-----------------~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
+...+. .+.|.+++|...|+...+. .|+. ... ..+-..|.+.|++++|...|++..+
T Consensus 99 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 176 (261)
T 3qky_A 99 YYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFD 176 (261)
T ss_dssp HHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 544100 0134488888888887753 2332 223 3456778899999999999999987
Q ss_pred CCCC-C-CHHHHHHHHHHhhcC----------CchhhHHhhhc
Q 043311 226 KGFV-P-DEKAVKEALIDKRGQ----------GFRGVINILFG 256 (257)
Q Consensus 226 ~g~~-p-~~~t~~~ll~~~~~~----------g~~~~~~~l~~ 256 (257)
..-. + ....+..+-.++... |+.+.|...|+
T Consensus 177 ~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~ 219 (261)
T 3qky_A 177 AYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYE 219 (261)
T ss_dssp HCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred HCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHH
Confidence 5211 1 245666666677765 77788887765
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-05 Score=70.45 Aligned_cols=152 Identities=11% Similarity=-0.080 Sum_probs=107.9
Q ss_pred CCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 043311 68 PTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145 (257)
Q Consensus 68 ~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 145 (257)
.|++++|.+.|++..+..-. +.. ..+-..|.+.|++++|.+.|++..+.. +-+...|..+-.+|...|++++|...|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47889999999988764322 111 246778889999999999999988752 235778999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHH
Q 043311 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA---QKVDEARGLLQQ 222 (257)
Q Consensus 146 ~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~ 222 (257)
++..+.. +-+...|..+-..+...|+ +++|.+.|++..+.. +-+...+..+...+... |+.++|.+.+++
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQ-----AEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 9988763 3467889999999999554 999999999987642 23567888899999999 999999999999
Q ss_pred HHHCC
Q 043311 223 MKAKG 227 (257)
Q Consensus 223 m~~~g 227 (257)
..+.+
T Consensus 154 al~~~ 158 (568)
T 2vsy_A 154 AVAQG 158 (568)
T ss_dssp HHHHT
T ss_pred HHhcC
Confidence 98764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=2.3e-05 Score=68.71 Aligned_cols=147 Identities=14% Similarity=-0.020 Sum_probs=93.6
Q ss_pred CccchhhcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHh
Q 043311 41 QPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKD 115 (257)
Q Consensus 41 ~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~ 115 (257)
+.+...+.+.....|+...... ..+...|++++|.+.|++..+..-. +.. ..+-.+|.+.|++++|.+.|++..+
T Consensus 6 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 85 (568)
T 2vsy_A 6 PRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASD 85 (568)
T ss_dssp ---------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3334444444444444222211 6667788899999998888875322 111 1366777888999999988888876
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC
Q 043311 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191 (257)
Q Consensus 116 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~ 191 (257)
.. +-+...|..+-.+|.+.|++++|.+.|++..+.. +-+...+..+...+...++ -|+.++|.+.+++..+.
T Consensus 86 ~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~--~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 86 AA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCD--WRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--CTTHHHHHHHHHHHHHH
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHhc
Confidence 42 2346788888888888899999999988887653 3356778888888888522 14588888888887764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.37 E-value=6e-05 Score=57.26 Aligned_cols=174 Identities=10% Similarity=-0.001 Sum_probs=113.5
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHH
Q 043311 73 NLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG----QGKEALRVFMRM 148 (257)
Q Consensus 73 ~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~----~~~~a~~~~~~m 148 (257)
+|.+.|....+.|.......+-..|...+++++|.+.|+...+.| +...+..|=..|.. + +.++|..+|++-
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 456677777776644444456667777888888888888887765 55666666666666 5 788888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 043311 149 LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR-PNAGTYTAVFEAFVR----AQKVDEARGLLQQM 223 (257)
Q Consensus 149 ~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~~~~~~a~~~~~~m 223 (257)
.+.| +...+..+-..|.. |.+..+.+++|.++|+...+.|.. -+...+..|-..|.. .+++++|...|++.
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~-g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVN-RQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTC-GGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHc-CCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 7765 55566666555543 111133488888888887765421 015666667777777 67888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHhhcC-C-----chhhHHhhhc
Q 043311 224 KAKGFVPDEKAVKEALIDKRGQ-G-----FRGVINILFG 256 (257)
Q Consensus 224 ~~~g~~p~~~t~~~ll~~~~~~-g-----~~~~~~~l~~ 256 (257)
.+.+ .+...+..|-..|... | +.++|...|+
T Consensus 156 ~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~ 192 (212)
T 3rjv_A 156 SSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLN 192 (212)
T ss_dssp HHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHH
T ss_pred HHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Confidence 7762 2333444444444332 2 6777777765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.34 E-value=6.2e-06 Score=66.11 Aligned_cols=189 Identities=14% Similarity=-0.037 Sum_probs=116.5
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcH------HHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNA------VKMFDALSKDGLTHEALQLFAQIKDK----GHMP-DVVAHTAVIEA 131 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~ 131 (257)
..+...|+++.|...|+...+....... ..+-..+...|++++|.+.|+...+. +..| ...++..+-..
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 92 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 92 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3455678888888888887775322111 13566777788888888887765432 2122 24567777777
Q ss_pred HHhcCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhccCCcchh--------------------HHHHHHHHH
Q 043311 132 YASAGQGKEALRVFMRMLASG-VAPN----AYTYAVLIKGLAAAADGNAKI--------------------LGDAQKYLM 186 (257)
Q Consensus 132 ~~~~~~~~~a~~~~~~m~~~g-~~~~----~~t~~~ll~~~~~~~~~~~~~--------------------~~~a~~~~~ 186 (257)
|...|++++|...|++..+.. -.++ ..++..+-..+.. .|. ++.|.+.++
T Consensus 93 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 93 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA-----KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----HHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-----cCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 888888888888887765421 0112 3366666666666 555 677777766
Q ss_pred HHHh----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 187 EMVG----KGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG-FVPD----EKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 187 ~m~~----~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+... .+-.+ ....+..+-..+...|++++|...+++..+.. -.++ ..++..+...+...|+.+.|..+|+
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5432 11111 12356667777777888888888887776431 0111 2356666667777788777777664
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.34 E-value=4.1e-05 Score=51.83 Aligned_cols=98 Identities=19% Similarity=0.173 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHH
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 201 (257)
...|..+...+...|++++|..+|+++.+.. +.+..++..+...+...| ++++|..+|+.+.+.. +.+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~-----~~~~A~~~~~~~~~~~-~~~~~~~~ 81 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQG-----DYDEAIEYYQKALELD-PNNAEAWY 81 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHhC-CccHHHHH
Confidence 4566667777777777777777777776542 335666777777777733 3777777777766532 23556677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 202 AVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
.+...+...|++++|...++++.+.
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 82 NLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 7777777777777777777777654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.34 E-value=6.4e-06 Score=60.62 Aligned_cols=155 Identities=14% Similarity=0.079 Sum_probs=93.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA 170 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~ 170 (257)
..-..+.+.|++++|...|+...+. .| +...|..+-..+...|++++|...|+...+. .|+...+.........
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~- 85 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH- 85 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH-
Confidence 3455667777888888777765542 23 4566777777777788888888777776543 2244333222111110
Q ss_pred cCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCch
Q 043311 171 ADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP-DEKAVKEALIDKRGQGFR 248 (257)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~ 248 (257)
+ .+....+...|+...+. .| +...+..+-..+...|++++|...|+++.+..-.+ +...+..+...+...|+.
T Consensus 86 ~---~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 86 Q---QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp H---HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred h---hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 0 00112345556655542 34 45667777777778888888888888777653222 345677777777777777
Q ss_pred hhHHhhhc
Q 043311 249 GVINILFG 256 (257)
Q Consensus 249 ~~~~~l~~ 256 (257)
+.+...|+
T Consensus 161 ~~A~~~y~ 168 (176)
T 2r5s_A 161 NAIASKYR 168 (176)
T ss_dssp CHHHHHHH
T ss_pred CcHHHHHH
Confidence 77766654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.33 E-value=2.3e-05 Score=63.08 Aligned_cols=141 Identities=8% Similarity=-0.005 Sum_probs=109.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhccCCcchhHHHHHHH
Q 043311 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV-APNAYTYAVLIKGLAAAADGNAKILGDAQKY 184 (257)
Q Consensus 106 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~ 184 (257)
+...|++..+.+ .++..++..+-.++...|++++|++++.+-...|- .-+...+..+++.+.+ .|+.+.|.+.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~-----~~r~d~A~k~ 158 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL-----NNNVSTASTI 158 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH-----TTCHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH-----CCCHHHHHHH
Confidence 677777777655 45666667888889999999999999999876553 2477889999999999 5559999999
Q ss_pred HHHHHhCCCCC-----CHHHHHHHHHHHH--HcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 185 LMEMVGKGMRP-----NAGTYTAVFEAFV--RAQ--KVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 185 ~~~m~~~g~~p-----~~~~~~~li~~~~--~~~--~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
++.|.+. .| +..+...|..+++ ..| +..+|..+|+++.+. .|+..+...++.++...|+++.|++++
T Consensus 159 l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 159 FDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHH
Confidence 9999874 56 3566666666633 334 899999999998765 466455556666899999999999987
Q ss_pred c
Q 043311 256 G 256 (257)
Q Consensus 256 ~ 256 (257)
+
T Consensus 235 ~ 235 (310)
T 3mv2_B 235 E 235 (310)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.32 E-value=4.7e-05 Score=58.26 Aligned_cols=159 Identities=16% Similarity=0.092 Sum_probs=82.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCH-HHHHHHHHHHHh
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKGH-MPD-VVAHTAVIEAYASAGQGKEALRVFMRMLASGVA-PNA-YTYAVLIKGLAA 169 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~~-~t~~~ll~~~~~ 169 (257)
-..+.+.|++++|...|+.+.+... .|. ...+..+-.+|.+.|++++|...|++..+..-. +.. ..+-.+-..+..
T Consensus 11 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~ 90 (225)
T 2yhc_A 11 AQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMA 90 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHh
Confidence 3445556666666666666654321 111 234555556666666666666666666543211 110 122222222221
Q ss_pred cc-------------CCcchhHHHHHHHHHHHHhCCCCCCHH-HH-----------------HHHHHHHHHcCCHHHHHH
Q 043311 170 AA-------------DGNAKILGDAQKYLMEMVGKGMRPNAG-TY-----------------TAVFEAFVRAQKVDEARG 218 (257)
Q Consensus 170 ~~-------------~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~-----------------~~li~~~~~~~~~~~a~~ 218 (257)
.+ ..+.|.+++|...|+.+.+. .|+.. .+ -.+-..|.+.|++++|..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 168 (225)
T 2yhc_A 91 LDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVN 168 (225)
T ss_dssp HHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 10 01134567777777766643 23321 11 123345667777777777
Q ss_pred HHHHHHHCCCCCC----HHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 219 LLQQMKAKGFVPD----EKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 219 ~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
.|+++.+. .|+ ...+..+..++.+.|+.+.|...++
T Consensus 169 ~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~ 208 (225)
T 2yhc_A 169 RVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAK 208 (225)
T ss_dssp HHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 77777664 233 2456666677777777777776654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.7e-06 Score=70.63 Aligned_cols=187 Identities=9% Similarity=-0.020 Sum_probs=134.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhC--CCC---CcHH----HHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE--GLT---NNAV----KMFDALSKDGLTHEALQLFAQIKDK----GHMP-DVVAHTAV 128 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~--~~~---p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l 128 (257)
..+...|+++.|...+....+. ... +... .+-.+|...|++++|.+.|....+. +-.+ ...+|..+
T Consensus 151 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 230 (383)
T 3ulq_A 151 ESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNI 230 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 7778899999999999988762 111 1111 3667888999999999999887643 2111 12478888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC----CCCCCHHH
Q 043311 129 IEAYASAGQGKEALRVFMRMLAS----GV-APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK----GMRPNAGT 199 (257)
Q Consensus 129 i~~~~~~~~~~~a~~~~~~m~~~----g~-~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~ 199 (257)
=.+|...|++++|...|++..+. +. +....++..+-..+.+.|+ +++|...+++..+. +-+.....
T Consensus 231 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~al~~~~~~~~~~~~~~ 305 (383)
T 3ulq_A 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK-----IDKAHEYHSKGMAYSQKAGDVIYLSE 305 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 89999999999999999988762 23 4456788889999999555 99999998876531 11112234
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 200 YTAVFEAFVRAQK---VDEARGLLQQMKAKGFVPD-EKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 200 ~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
++.+-..|...|+ +++|..++++. +..|+ ...+..+-..+...|+.+.|..+|+|
T Consensus 306 ~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 364 (383)
T 3ulq_A 306 FEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLK 364 (383)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5667777888888 66666666654 33333 34566677789999999999988864
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.32 E-value=5.5e-06 Score=68.57 Aligned_cols=87 Identities=16% Similarity=-0.002 Sum_probs=42.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcH------HHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNA------VKMFDALSKDGLTHEALQLFAQIKDK----GHMPD-VVAHTAVIEA 131 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~ 131 (257)
..+...|++++|...|+...+.+..... ..+-..|...|++++|...|+...+. +-.|. ..+|..+-..
T Consensus 17 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 96 (406)
T 3sf4_A 17 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 96 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3444556666666666655554221110 02444555566666666655544321 11111 3345555555
Q ss_pred HHhcCChHHHHHHHHHHH
Q 043311 132 YASAGQGKEALRVFMRML 149 (257)
Q Consensus 132 ~~~~~~~~~a~~~~~~m~ 149 (257)
|...|++++|...|++..
T Consensus 97 ~~~~g~~~~A~~~~~~al 114 (406)
T 3sf4_A 97 LKVLGNFDEAIVCCQRHL 114 (406)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 556666666666655544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.5e-05 Score=64.25 Aligned_cols=156 Identities=11% Similarity=-0.021 Sum_probs=84.8
Q ss_pred ccccCCCCHHHHHHHHHHHHhC----CCCCcH----HHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE----GLTNNA----VKMFDALSKDGLTHEALQLFAQIKDK----GHMP-DVVAHTAVI 129 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~----~~~p~~----~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li 129 (257)
..+...|++++|...|.+..+. +-.+.. ..+-.+|.+.|++++|...|+...+. |-.. -..+|+.+-
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566667666666655542 111111 12455566667777777777655432 1111 124555666
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh----CCCCCCH-HH
Q 043311 130 EAYASAGQGKEALRVFMRMLASGVAPN-----AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG----KGMRPNA-GT 199 (257)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~m~~~g~~~~-----~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g~~p~~-~~ 199 (257)
..|.. |++++|...|++..+.....+ ..+|..+-..+...| ++++|...|++... .+..+.. ..
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ-----KFDEAAASLQKEKSMYKEMENYPTCYKK 197 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 66666 777777777776665321111 345556666666633 37777777766553 1111111 24
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 043311 200 YTAVFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 200 ~~~li~~~~~~~~~~~a~~~~~~m~ 224 (257)
+..+...+...|++++|...|++..
T Consensus 198 ~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 198 CIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5555555666677777777777766
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.4e-05 Score=66.16 Aligned_cols=189 Identities=11% Similarity=0.021 Sum_probs=134.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhCC-CCCcHH-------HHHHHHHhcCChHHHHHHHHHHHhC----CC-CC-CHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEG-LTNNAV-------KMFDALSKDGLTHEALQLFAQIKDK----GH-MP-DVVAHTAV 128 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~-------~ll~~~~~~~~~~~a~~~~~~m~~~----g~-~p-~~~~~~~l 128 (257)
..+...|+++.|.+.|+...+.- -.++.. .+-..|...|+++.|...|.+..+. +- .+ ...+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 56678999999999999998741 122221 3677888999999999999887643 11 11 24578888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh----CCC-CCCHH
Q 043311 129 IEAYASAGQGKEALRVFMRMLASGV-APN----AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG----KGM-RPNAG 198 (257)
Q Consensus 129 i~~~~~~~~~~~a~~~~~~m~~~g~-~~~----~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g~-~p~~~ 198 (257)
=..|...|++++|...|++..+..- ..+ ..+|..+-..|...|+ +++|.+.|++..+ .+. +-...
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~-----~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ-----YEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHhhccchhHHH
Confidence 8899999999999999988764310 112 2477788888888554 9999999988765 133 22356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHhhcCCc---hhhHHhhhc
Q 043311 199 TYTAVFEAFVRAQKVDEARGLLQQMKAK----GFVPDEKAVKEALIDKRGQGF---RGVINILFG 256 (257)
Q Consensus 199 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~g~---~~~~~~l~~ 256 (257)
++..+-..|.+.|++++|...+++..+. +-......+..+-..+...|+ .+.+..+++
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~ 330 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE 330 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 7888899999999999999999998753 111122334556667777887 566655543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.27 E-value=3.7e-05 Score=60.13 Aligned_cols=156 Identities=11% Similarity=0.051 Sum_probs=115.8
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCc---H-HHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHh-
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNN---A-VKMFDALSKDGLTHEALQLFAQIKDKGH-MPD-VVAHTAVIEAYAS- 134 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~---~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~~li~~~~~- 134 (257)
..+.+.|++++|...|+.+.+..- .|. . ..+-.+|.+.|++++|...|+...+... .|. ...+..+-.++..
T Consensus 23 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~ 102 (261)
T 3qky_A 23 MEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKL 102 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHh
Confidence 667789999999999999998532 211 1 1367788999999999999999987522 222 4567777777888
Q ss_pred -------cCChHHHHHHHHHHHHCCCCCCHHHH-----------------HHHHHHHHhccCCcchhHHHHHHHHHHHHh
Q 043311 135 -------AGQGKEALRVFMRMLASGVAPNAYTY-----------------AVLIKGLAAAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 135 -------~~~~~~a~~~~~~m~~~g~~~~~~t~-----------------~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
.|++++|...|++..+.. +-+...+ ..+-..+... |+++.|...|+...+
T Consensus 103 ~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~ 176 (261)
T 3qky_A 103 SPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERR-----ELYEAAAVTYEAVFD 176 (261)
T ss_dssp CCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHH
Confidence 999999999999998752 1122233 3445566774 449999999999876
Q ss_pred CCCCCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHC
Q 043311 191 KGMRPN----AGTYTAVFEAFVRA----------QKVDEARGLLQQMKAK 226 (257)
Q Consensus 191 ~g~~p~----~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~~ 226 (257)
. .|+ ...+..+..+|... |++++|...|++..+.
T Consensus 177 ~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 177 A--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp H--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred H--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 4 243 34566777778766 8999999999999875
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.26 E-value=2.2e-05 Score=62.74 Aligned_cols=160 Identities=9% Similarity=-0.037 Sum_probs=114.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKG-HMPDV----VAHTAVIEAYASAGQGKEALRVFMRMLASGVA-PN----AYTYAV 162 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g-~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~----~~t~~~ 162 (257)
.+..+...|++++|.++++...+.. ..|+. ..+..+...+...+++++|...|++..+.... .+ ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3667788999999999999987742 22332 23344666666778999999999998874222 23 346888
Q ss_pred HHHHHHhccCCcchhHHHHHHHHHHHHh----C-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-
Q 043311 163 LIKGLAAAADGNAKILGDAQKYLMEMVG----K-GMRPNA-GTYTAVFEAFVRAQKVDEARGLLQQMKA----KGFVPD- 231 (257)
Q Consensus 163 ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~-g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~- 231 (257)
+-..|...|+ ++.|...|+...+ . +..+.. .+|..+-..|.+.|++++|...+++..+ .+..+.
T Consensus 161 lg~~y~~~g~-----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 161 IANIYAENGY-----LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHTTC-----HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHHcCC-----HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 8888888555 9999999988773 1 222222 3678888999999999999999988764 233333
Q ss_pred HHHHHHHHHHhhcCCc-hhhHHhhhcC
Q 043311 232 EKAVKEALIDKRGQGF-RGVINILFGK 257 (257)
Q Consensus 232 ~~t~~~ll~~~~~~g~-~~~~~~l~~k 257 (257)
...|..+-..+...|+ .+.|...|+|
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 5677788888889994 5888877653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=6.7e-05 Score=59.82 Aligned_cols=173 Identities=10% Similarity=0.042 Sum_probs=125.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHH----HHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 043311 69 TDPRNLQEIFHKMRTEGLTNNAV----KMFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGKEALR 143 (257)
Q Consensus 69 ~~~~~a~~~~~~m~~~~~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~ 143 (257)
...+...+.+.... |+.. .+-..+.+.|++++|...|+...+. .| +...+..+-..+...|++++|..
T Consensus 100 ~~~~~l~~~l~~~l-----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~ 172 (287)
T 3qou_A 100 QPEEAIRALLDXVL-----PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEA 172 (287)
T ss_dssp CCHHHHHHHHHHHS-----CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHc-----CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHH
Confidence 34444555554443 4432 3666778999999999999998774 34 56789999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043311 144 VFMRMLASGVAPNAYTYAVLIK-GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222 (257)
Q Consensus 144 ~~~~m~~~g~~~~~~t~~~ll~-~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 222 (257)
.|++.... .|+......... .+.. .+..+.+...|+...... +.+...+..+-..+...|++++|...|++
T Consensus 173 ~l~~~~~~--~p~~~~~~~~~~~~l~~-----~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~ 244 (287)
T 3qou_A 173 VLXTIPLQ--DQDTRYQGLVAQIELLX-----QAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFG 244 (287)
T ss_dssp HHTTSCGG--GCSHHHHHHHHHHHHHH-----HHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhCchh--hcchHHHHHHHHHHHHh-----hcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 99988764 455543333222 2344 333566777787776541 33667888899999999999999999999
Q ss_pred HHHCCCC-CCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 223 MKAKGFV-PDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 223 m~~~g~~-p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+.+..-. .+...+..+...+...|..+.+...|+
T Consensus 245 ~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r 279 (287)
T 3qou_A 245 HLRXDLTAADGQTRXTFQEILAALGTGDALASXYR 279 (287)
T ss_dssp HHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHhcccccccchHHHHHHHHHHHcCCCCcHHHHHH
Confidence 9986321 236788999999999999888776654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.24 E-value=8.1e-05 Score=56.26 Aligned_cols=164 Identities=17% Similarity=0.102 Sum_probs=116.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH----H----------------HHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV----K----------------MFDALSKDGLTHEALQLFAQIKDKGHMPDV 122 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~----------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 122 (257)
..+.+.|+++.|...|+...+. .|+.. . +-.+|.+.|++++|...|+...+.. +-+.
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 88 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNV 88 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCH
Confidence 3456789999999999998874 33322 2 5677889999999999999988752 2367
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHH--H
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT--Y 200 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~ 200 (257)
..|..+-.+|...|++++|...|++..+.. +-+...|..+-..+...+. +..+.+...++... .|+... +
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~a~ 160 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE---QEKKKLETDYKKLS----SPTKMQYAR 160 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH---HHHHHHHHHHC-------CCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHh----CCCchhHHH
Confidence 889999999999999999999999998763 3367788887777755222 12344555555543 344433 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043311 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239 (257)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 239 (257)
...-.++...|++++|...|++..+ +.|+......+.
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 2233445667899999999999876 568866554443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.9e-06 Score=70.73 Aligned_cols=220 Identities=9% Similarity=-0.060 Sum_probs=148.2
Q ss_pred hhhcccCCCCccchhhcccCCCCCCcc-----cc-cc-ccccCCCCHHHHHHHHHHHHhC----CCCCcHH----HHHHH
Q 043311 32 QRSLSSSSDQPTKKYVNTKSKLPPPYD-----PF-KK-VVDEEPTDPRNLQEIFHKMRTE----GLTNNAV----KMFDA 96 (257)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~p~~~-----~~-~~-~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~----~ll~~ 96 (257)
......++...+...+.+.....|+.. .+ .+ ..+...|+++.|...+++..+. +..|... .+-..
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 344556666666666555444444422 11 12 6777899999999999887753 2222221 36778
Q ss_pred HHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHHC---
Q 043311 97 LSKDGLTHEALQLFAQIKDK----GHMP-DVVAHTAVIEAYASAGQ-----------------GKEALRVFMRMLAS--- 151 (257)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~m~~~--- 151 (257)
|...|++++|...|++..+. +-.+ ...+|..+-..|...|+ +++|...|++..+.
T Consensus 136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 215 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD 215 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999887643 1112 34578888888999999 99999988876542
Q ss_pred -CC-CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043311 152 -GV-APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM-RPN----AGTYTAVFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 152 -g~-~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~ 224 (257)
+- .....+|..+-..+...|+ +++|...+++..+..- .++ ...+..+...|...|++++|...+++..
T Consensus 216 ~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 216 LGDRGAQGRACGNLGNTYYLLGD-----FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 11 1123577777788888444 8899888887654200 012 2367788888899999999999998877
Q ss_pred HCC--CC---CCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 225 AKG--FV---PDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 225 ~~g--~~---p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
... .. ....++..+-..+...|+.+.|..+|+
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN 327 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 531 11 124567777778889999999888775
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.9e-06 Score=71.43 Aligned_cols=190 Identities=11% Similarity=-0.019 Sum_probs=136.3
Q ss_pred ccccCCCCHHHHHHHHHHHHhC----CCCCc----HHHHHHHHHhcCC--------------------hHHHHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE----GLTNN----AVKMFDALSKDGL--------------------THEALQLFAQIK 114 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~----~~~p~----~~~ll~~~~~~~~--------------------~~~a~~~~~~m~ 114 (257)
..+...|+++.|...+....+. +-.+. ...+-..|...|+ +++|.+.|....
T Consensus 95 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 174 (406)
T 3sf4_A 95 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL 174 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 6778899999999999887752 11111 1136677788888 899998887764
Q ss_pred hC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhccCCcchhHHHHHHH
Q 043311 115 DK----GHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLASG-VAPN----AYTYAVLIKGLAAAADGNAKILGDAQKY 184 (257)
Q Consensus 115 ~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~----~~t~~~ll~~~~~~~~~~~~~~~~a~~~ 184 (257)
+. +..| ...+|..+-..|...|++++|...|++..+.. -.++ ..+|..+-..+...|+ +++|...
T Consensus 175 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~ 249 (406)
T 3sf4_A 175 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE-----FETASEY 249 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC-----hHHHHHH
Confidence 32 2222 23578888889999999999999998876431 1122 3477888888888554 9999999
Q ss_pred HHHHHh----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhcCCchhhHHhh
Q 043311 185 LMEMVG----KGMRPN-AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF-VPD----EKAVKEALIDKRGQGFRGVINIL 254 (257)
Q Consensus 185 ~~~m~~----~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~~~~l 254 (257)
+++... .+..+. ..++..+-..|...|++++|...+++.....- ..+ ..++..+-..+...|+.+.|..+
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 988653 221111 45788888999999999999999999875311 122 55777778889999999999988
Q ss_pred hcC
Q 043311 255 FGK 257 (257)
Q Consensus 255 ~~k 257 (257)
|++
T Consensus 330 ~~~ 332 (406)
T 3sf4_A 330 AEK 332 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00019 Score=57.16 Aligned_cols=158 Identities=9% Similarity=0.022 Sum_probs=116.9
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCcHH-------HHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNNAV-------KMFDALSKDGLTHEALQLFAQIKDKGHM-PD----VVAHTAVI 129 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-------~ll~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li 129 (257)
..+...|+++.|.++++...+... .|+.. .+...+...|++++|.+.|+...+.... ++ ..+|+.+-
T Consensus 83 ~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg 162 (293)
T 3u3w_A 83 IMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIA 162 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 456788999999999999887432 33321 2445556678999999999999874322 23 33789999
Q ss_pred HHHHhcCChHHHHHHHHHHHHC-----CCCC-CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh----CCCCCC-HH
Q 043311 130 EAYASAGQGKEALRVFMRMLAS-----GVAP-NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG----KGMRPN-AG 198 (257)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~m~~~-----g~~~-~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~ 198 (257)
..|...|++++|...|++..+. +..+ ...+|..+-..|.+.|+ +++|.+.+++..+ .+..+. ..
T Consensus 163 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-----y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-----YEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 9999999999999999998741 2222 23478888888999555 9999999887653 333333 56
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 043311 199 TYTAVFEAFVRAQ-KVDEARGLLQQMKA 225 (257)
Q Consensus 199 ~~~~li~~~~~~~-~~~~a~~~~~~m~~ 225 (257)
.|..+-..|.+.| ..++|.+.+++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 7888888999999 56999999988764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.22 E-value=5.9e-06 Score=66.20 Aligned_cols=190 Identities=12% Similarity=0.010 Sum_probs=136.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCc-------HHHHHHHHHhcCC--------------------hHHHHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNN-------AVKMFDALSKDGL--------------------THEALQLFAQIK 114 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~-------~~~ll~~~~~~~~--------------------~~~a~~~~~~m~ 114 (257)
..+...|+++.|...+.+..+..- .++ ...+-..|...|+ +++|.+.|++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 677889999999999988765211 111 1136677788888 899998887764
Q ss_pred hC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhccCCcchhHHHHHHH
Q 043311 115 DK----GHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLAS----G-VAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184 (257)
Q Consensus 115 ~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g-~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~ 184 (257)
+. +..+ ...++..+-..|...|++++|...|++..+. + ......++..+...+...|+ +++|...
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~ 245 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE-----FETASEY 245 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC-----HHHHHHH
Confidence 32 2112 2457888888999999999999999987643 1 11123477788888888444 9999999
Q ss_pred HHHHHh----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHhhcCCchhhHHhh
Q 043311 185 LMEMVG----KGMRPN-AGTYTAVFEAFVRAQKVDEARGLLQQMKAK----GF-VPDEKAVKEALIDKRGQGFRGVINIL 254 (257)
Q Consensus 185 ~~~m~~----~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~t~~~ll~~~~~~g~~~~~~~l 254 (257)
+++... .+..+. ..++..+-..+...|++++|...+++.... +- .....++..+-..+...|+.+.|..+
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 887653 111111 456788889999999999999999988653 11 11244677788889999999999998
Q ss_pred hcC
Q 043311 255 FGK 257 (257)
Q Consensus 255 ~~k 257 (257)
|++
T Consensus 326 ~~~ 328 (338)
T 3ro2_A 326 AEK 328 (338)
T ss_dssp HHH
T ss_pred HHH
Confidence 863
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.9e-05 Score=64.27 Aligned_cols=186 Identities=8% Similarity=0.008 Sum_probs=132.8
Q ss_pred ccccCCCCHHHHHHHHHHHHhC--CC---CCcHH----HHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE--GL---TNNAV----KMFDALSKDGLTHEALQLFAQIKDK----GHMP-DVVAHTAV 128 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~--~~---~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l 128 (257)
..+...|+++.|...+....+. .. .+... .+-.+|...|++++|.+.|....+. +-.+ ...+++.+
T Consensus 149 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 228 (378)
T 3q15_A 149 EAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNI 228 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6778899999999999887762 11 11111 3667888999999999999877642 2111 23577888
Q ss_pred HHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC----CCCCCHHH
Q 043311 129 IEAYASAGQGKEALRVFMRMLA-----SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK----GMRPNAGT 199 (257)
Q Consensus 129 i~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~ 199 (257)
=.+|...|++++|...|++..+ .. +....++..+-..+.+.|+ +++|...+++..+. +-+.....
T Consensus 229 g~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 229 ANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQ-----TQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8889999999999999998876 33 3347788888889999555 99999999987642 22222345
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 200 YTAVFEAFVRAQK---VDEARGLLQQMKAKGFVPD-EKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 200 ~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
++.+-..|...++ +.+|..++++ .+..|+ ...+..+-..+...|+.+.|..+|+|
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 361 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRK 361 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666666777788 6666666665 333333 34555677789999999999998864
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00017 Score=55.10 Aligned_cols=156 Identities=12% Similarity=0.079 Sum_probs=110.7
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCcH----HHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHh-
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNNA----VKMFDALSKDGLTHEALQLFAQIKDKGH-MPDV-VAHTAVIEAYAS- 134 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~~----~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~-~~~~~li~~~~~- 134 (257)
..+.+.|++++|...|+.+.+..- .|.. ..+..+|.+.|++++|...|+...+... .+.. ..+..+-.++..
T Consensus 12 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~ 91 (225)
T 2yhc_A 12 QQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMAL 91 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhh
Confidence 456678999999999999987432 3321 2477899999999999999999887532 1221 133333333332
Q ss_pred -----------------cCChHHHHHHHHHHHHCCCCCCH-HHHH-----------------HHHHHHHhccCCcchhHH
Q 043311 135 -----------------AGQGKEALRVFMRMLASGVAPNA-YTYA-----------------VLIKGLAAAADGNAKILG 179 (257)
Q Consensus 135 -----------------~~~~~~a~~~~~~m~~~g~~~~~-~t~~-----------------~ll~~~~~~~~~~~~~~~ 179 (257)
.|++++|...|++..+. .|+. ..+. .+-..+.+ .|+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~-----~~~~~ 164 (225)
T 2yhc_A 92 DDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE-----RGAWV 164 (225)
T ss_dssp HC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HTCHH
T ss_pred hhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCcHH
Confidence 57899999999999875 2332 2221 23334556 45599
Q ss_pred HHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 043311 180 DAQKYLMEMVGKGMRPNA----GTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227 (257)
Q Consensus 180 ~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 227 (257)
.|...|+.+.+. .|+. ..+..+..+|.+.|+.++|.+.++.+...+
T Consensus 165 ~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 165 AVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 999999998864 3443 467788899999999999999999998764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.5e-05 Score=58.64 Aligned_cols=155 Identities=10% Similarity=0.032 Sum_probs=111.7
Q ss_pred ccccCCCCHHHHHHHHHHHHhCC-CCCcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEG-LTNNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA-YASAGQGK 139 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~ 139 (257)
..+.+.|++++|...|+...+.. -.+.. ..+-.++.+.|++++|...|+...+.. |+...+..+-.. +...++..
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~ 91 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAES 91 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccc
Confidence 56778899999999999877632 12222 247778899999999999999876643 344433322111 22323344
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARG 218 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~ 218 (257)
+|...|++..+.. +-+...+..+-..+...| ++++|...|+...+..-.+ +...+..+...+...|+.++|..
T Consensus 92 ~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g-----~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 92 PELKRLEQELAAN-PDNFELACELAVQYNQVG-----RDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc-----cHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 5788888887652 336788889999999944 4999999999988753222 35688889999999999999999
Q ss_pred HHHHHHH
Q 043311 219 LLQQMKA 225 (257)
Q Consensus 219 ~~~~m~~ 225 (257)
.|++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.20 E-value=7.3e-05 Score=61.85 Aligned_cols=188 Identities=9% Similarity=-0.063 Sum_probs=132.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCC-CCCcHH-------HHHHHHHhcCChHHHHHHHHHHHhC----CC-CC-CHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEG-LTNNAV-------KMFDALSKDGLTHEALQLFAQIKDK----GH-MP-DVVAHTAV 128 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~-------~ll~~~~~~~~~~~a~~~~~~m~~~----g~-~p-~~~~~~~l 128 (257)
..+...|+++.|...|....+.- -.++.. .+-.+|...|+++.|...+.+..+. +- .+ ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 45678999999999999988642 122211 3677888999999999998877542 11 11 24578888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh----CCCCCCHHH
Q 043311 129 IEAYASAGQGKEALRVFMRMLAS----GVA-PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG----KGMRPNAGT 199 (257)
Q Consensus 129 i~~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g~~p~~~~ 199 (257)
=..|...|++++|...|++..+. +-. ....++..+-..|...| ++++|...|++..+ .+.+....+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~-----~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG-----DDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 88999999999999999887653 111 12356777778888844 49999999988765 122223567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHhhcCCc---hhhHHhhh
Q 043311 200 YTAVFEAFVRAQKVDEARGLLQQMKAKG----FVPDEKAVKEALIDKRGQGF---RGVINILF 255 (257)
Q Consensus 200 ~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~t~~~ll~~~~~~g~---~~~~~~l~ 255 (257)
+..+-..|.+.|++++|...+++..+.. -......+..+-..+...|+ ...+..++
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 8888899999999999999999988642 22223345555555666776 55555554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.9e-05 Score=68.85 Aligned_cols=171 Identities=11% Similarity=-0.035 Sum_probs=128.8
Q ss_pred cCCCCHHHHHHHHHHHHh------CCCCCcH----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043311 66 EEPTDPRNLQEIFHKMRT------EGLTNNA----VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135 (257)
Q Consensus 66 ~~~~~~~~a~~~~~~m~~------~~~~p~~----~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 135 (257)
...|++++|.+.++...+ ....|+. ..+-.+|.+.|++++|.+.|+...+.. .-+...|..+=.+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 788999999999999881 1122332 236678889999999999999988742 23567888888999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 043311 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215 (257)
Q Consensus 136 ~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 215 (257)
|++++|...|++..+.. +-+...|..+-..+...|+ +++ .+.|+...+.. +-+...|..+-..+.+.|++++
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~-----~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGN-----TDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTC-----CCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC-----hHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHH
Confidence 99999999999988763 3366788888888888555 777 88888776531 2256788889999999999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCc
Q 043311 216 ARGLLQQMKAKGFVPD-EKAVKEALIDKRGQGF 247 (257)
Q Consensus 216 a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~ 247 (257)
|...|++..+ +.|+ ...+..+..++...|.
T Consensus 553 A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 553 AVRTLDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 9999998765 3465 4566666666655443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00016 Score=51.80 Aligned_cols=124 Identities=11% Similarity=-0.002 Sum_probs=92.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
+-..+...|+++.|...|+...+.. +.+..+|..+-.++...|++++|...|++..+.. +.+...|..+-..+...|+
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~ 96 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 96 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcc
Confidence 5567788999999999999887642 2357788888888999999999999999888753 3467788888888888444
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHH
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTA--VFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--li~~~~~~~~~~~a~~~~~~m~ 224 (257)
+++|.+.|+...+.. +-+...+.. +...+.+.|++++|...+....
T Consensus 97 -----~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 97 -----FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp -----HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999998877542 123344433 3344777889999999888764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00016 Score=57.61 Aligned_cols=160 Identities=8% Similarity=-0.073 Sum_probs=115.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPD-V----VAHTAVIEAYASAGQGKEALRVFMRMLASGV---APN--AYTYA 161 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~~~--~~t~~ 161 (257)
..+..+...|++++|.+.+....+.....+ . ..+..+-..+...|++++|...|++..+... .+. ..+|+
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 357788899999999999988776532211 1 2234455567778899999999998875321 222 45888
Q ss_pred HHHHHHHhccCCcchhHHHHHHHHHHHHh----CCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-
Q 043311 162 VLIKGLAAAADGNAKILGDAQKYLMEMVG----KGMRP--NAGTYTAVFEAFVRAQKVDEARGLLQQMKAK----GFVP- 230 (257)
Q Consensus 162 ~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p- 230 (257)
.+-..|...|+ +++|...|++..+ .+-.+ ...+|+.+-..|...|++++|..++++..+. +...
T Consensus 160 ~lg~~y~~~~~-----~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 160 AIANIYAENGY-----LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHTTC-----HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHcCC-----HHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 88889998555 9999999988762 21111 1257888889999999999999999988653 2111
Q ss_pred CHHHHHHHHHHhhcCCchhhH-Hhhhc
Q 043311 231 DEKAVKEALIDKRGQGFRGVI-NILFG 256 (257)
Q Consensus 231 ~~~t~~~ll~~~~~~g~~~~~-~~l~~ 256 (257)
-..+|..+-..+...|+.+.| ...|+
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~ 261 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 156788888889999999888 66554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00016 Score=48.77 Aligned_cols=107 Identities=21% Similarity=0.215 Sum_probs=81.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~ 171 (257)
.+...+...|++++|.++|+...+.. +.+..+|..+...+.+.|++++|..+|+++.+.. +.+..++..+...+...|
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 91 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQG 91 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhc
Confidence 36677888999999999999887752 2357788889999999999999999999988763 446788888888898844
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 043311 172 DGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAF 207 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~ 207 (257)
+ +++|...|+...+. .| +...+..+-..+
T Consensus 92 ~-----~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 92 D-----YDEAIEYYQKALEL--DPNNAEAKQNLGNAK 121 (125)
T ss_dssp C-----HHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred C-----HHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 4 99999999988764 23 334444444433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00014 Score=49.47 Aligned_cols=118 Identities=9% Similarity=-0.024 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHH
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 201 (257)
...|..+-..+...|++++|...|++..+.. +.+...|..+...+...|+ +++|.+.++...... +.+...+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~-----~~~A~~~~~~~~~~~-~~~~~~~~ 84 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGN-----YAGAVQDCERAICID-PAYSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhc-----hHHHHHHHHHHHhcC-ccCHHHHH
Confidence 3455555666666666666666666665542 2345566666666666333 666666666655431 22345566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCc
Q 043311 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247 (257)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 247 (257)
.+-..+...|++++|...|++..+.. +.+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 66666666677777777776666542 1244445555445544443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.15 E-value=7e-05 Score=53.68 Aligned_cols=127 Identities=11% Similarity=-0.049 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHH
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 201 (257)
...|..+-..+...|++++|...|++..+.. +.+..+|..+...+...|+ +++|...++...... +.+...|.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~-----~~~A~~~~~~a~~~~-~~~~~~~~ 85 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTEC-----YGYALGDATRAIELD-KKYIKGYY 85 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhC-cccHHHHH
Confidence 4567777788899999999999999988753 4468888888888988544 999999999887642 33567888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHhhcCCchhhHHhhhc
Q 043311 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV--KEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~g~~~~~~~l~~ 256 (257)
.+-..+...|++++|...|++..+.. +-+...+ ......+...|+.+.|..++.
T Consensus 86 ~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 141 (166)
T 1a17_A 86 RRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 141 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 88899999999999999999998753 2244444 334444778899888887764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.15 E-value=8.5e-05 Score=55.84 Aligned_cols=124 Identities=11% Similarity=-0.053 Sum_probs=100.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 203 (257)
.+..+-..+...|++++|...|++. +.|+...|..+-..+...|+ +++|.+.|+...... +.+...|..+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~-----~~~A~~~~~~al~~~-~~~~~~~~~l 77 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKN-----MTEAEKAFTRSINRD-KHLAVAYFQR 77 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhC-ccchHHHHHH
Confidence 3445566788899999999999876 46788999999999999555 999999999887642 3356788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC--------------CC-CHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 204 FEAFVRAQKVDEARGLLQQMKAKGF--------------VP-DEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 204 i~~~~~~~~~~~a~~~~~~m~~~g~--------------~p-~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
-..|...|++++|...|++..+..- .| +...+..+-..+...|+.+.|...|++
T Consensus 78 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 78 GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999999999999988531 11 236778888899999999999988753
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00016 Score=68.61 Aligned_cols=169 Identities=13% Similarity=0.166 Sum_probs=95.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 043311 67 EPTDPRNLQEIFHKMRTEGLTNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145 (257)
Q Consensus 67 ~~~~~~~a~~~~~~m~~~~~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 145 (257)
..+++++|.++.++.. .|..+ .+-.++.+.|++++|.+.|..- -|...|..++.+|.+.|++++|.+.|
T Consensus 1088 ~i~nldrAiE~Aervn----~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN----EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred HHhhHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5666666666666441 12222 3556666666666666666432 25566666666666666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhccC-----------------------CcchhHHHHHHHHHHHHhCCCCCCHHHHHH
Q 043311 146 MRMLASGVAPNAYTYAVLIKGLAAAAD-----------------------GNAKILGDAQKYLMEMVGKGMRPNAGTYTA 202 (257)
Q Consensus 146 ~~m~~~g~~~~~~t~~~ll~~~~~~~~-----------------------~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 202 (257)
..-++.. ++....+.+..+|++.+. .+.|.++.|..+|+.. ..|..
T Consensus 1158 ~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~r 1226 (1630)
T 1xi4_A 1158 QMARKKA--RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGR 1226 (1630)
T ss_pred HHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHH
Confidence 5433332 222112224444444322 1134466677666663 47888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC------------------------CCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 203 VFEAFVRAQKVDEARGLLQQMKAK------------------------GFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~m~~~------------------------g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+...+++.|++++|.+.+++..+. ++..+...+..++..|.+.|.++.+..+++
T Consensus 1227 LA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A 1227 LASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred HHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888888888887765221 112233445555556666666666666654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.8e-05 Score=58.93 Aligned_cols=153 Identities=14% Similarity=0.026 Sum_probs=87.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCcHH----HHHHHHHhcCChHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCC
Q 043311 67 EPTDPRNLQEIFHKMRTEGLTNNAV----KMFDALSKDGLTHEALQLFAQIKD----KGHMP-DVVAHTAVIEAYASAGQ 137 (257)
Q Consensus 67 ~~~~~~~a~~~~~~m~~~~~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~----~g~~p-~~~~~~~li~~~~~~~~ 137 (257)
..|++++|.++++.+.... +... .+-..+...|++++|...|++..+ .+..+ ...++..+-..|...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHP--ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHTST--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4677777777554443321 1111 355566677777777777776654 12222 23456666667777777
Q ss_pred hHHHHHHHHHHHHCC--C--CC--CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHH
Q 043311 138 GKEALRVFMRMLASG--V--AP--NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG----KGMRPN-AGTYTAVFEA 206 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g--~--~~--~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~~~~li~~ 206 (257)
+++|...|++..+.- . .+ ....+..+-..+...|+ +++|...+++... .+.... ..++..+-..
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 156 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD-----LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDL 156 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 777777777777751 1 11 23445566666666333 7777777776542 111111 1234556666
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 043311 207 FVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 207 ~~~~~~~~~a~~~~~~m~~~ 226 (257)
+...|++++|.+.+++..+.
T Consensus 157 ~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 157 AQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHH
Confidence 77777777777777776543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=6.1e-05 Score=60.09 Aligned_cols=152 Identities=9% Similarity=0.003 Sum_probs=118.7
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCChH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE-AYASAGQGK 139 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~-~~~~~~~~~ 139 (257)
..+.+.|++++|...|+...+..- .+... .+-..+.+.|++++|..+|+...+. .|+......... .+...++.+
T Consensus 125 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~ 202 (287)
T 3qou_A 125 MQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADT 202 (287)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcccC
Confidence 666789999999999999887432 22222 4788899999999999999988764 355543333332 366777888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHH
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN---AGTYTAVFEAFVRAQKVDEA 216 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~~~~~~a 216 (257)
+|...|++..+.. +.+...+..+-..+.. .|++++|...|...... .|+ ...+..+...+...|+.++|
T Consensus 203 ~a~~~l~~al~~~-P~~~~~~~~la~~l~~-----~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 203 PEIQQLQQQVAEN-PEDAALATQLALQLHQ-----VGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred ccHHHHHHHHhcC-CccHHHHHHHHHHHHH-----cccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHHcCCCCcH
Confidence 8999999988763 4578889999999999 45599999999998864 343 56799999999999999999
Q ss_pred HHHHHHHH
Q 043311 217 RGLLQQMK 224 (257)
Q Consensus 217 ~~~~~~m~ 224 (257)
...|++..
T Consensus 275 ~~~~r~al 282 (287)
T 3qou_A 275 ASXYRRQL 282 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.12 E-value=6.1e-05 Score=56.98 Aligned_cols=150 Identities=11% Similarity=0.012 Sum_probs=107.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHH----------------HHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKGHMPD-VVAHTA----------------VIEAYASAGQGKEALRVFMRMLASGVAPN 156 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 156 (257)
-..+.+.|++++|...|+...+. .|+ ...|.. +-.+|.+.|++++|...|++..+.. +-+
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 87 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNN 87 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCC
Confidence 34667899999999999998774 343 345655 7888999999999999999998763 347
Q ss_pred HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHH
Q 043311 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQK--VDEARGLLQQMKAKGFVPDEK 233 (257)
Q Consensus 157 ~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~ 233 (257)
...|..+-..+...| ++++|...|+...+. .| +...|..+-..|...|+ ...+...++... .|+..
T Consensus 88 ~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 156 (208)
T 3urz_A 88 VDCLEACAEMQVCRG-----QEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKM 156 (208)
T ss_dssp HHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHH
T ss_pred HHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCch
Confidence 788999999999944 499999999998864 34 45677777777765543 445555565543 45543
Q ss_pred H--HHHHHHHhhcCCchhhHHhhhcC
Q 043311 234 A--VKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 234 t--~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
. +...-.++...|+.+.|...|+|
T Consensus 157 ~~a~~~~g~~~~~~~~~~~A~~~~~~ 182 (208)
T 3urz_A 157 QYARYRDGLSKLFTTRYEKARNSLQK 182 (208)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3 33333455667888888887764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.11 E-value=8.7e-05 Score=61.03 Aligned_cols=189 Identities=11% Similarity=-0.050 Sum_probs=130.5
Q ss_pred ccccCCCCHHHHHHHHHHHHhC----CCC--CcHH----HHHHHHHhcCChHHHHHHHHHHHhCCCC--C--CHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE----GLT--NNAV----KMFDALSKDGLTHEALQLFAQIKDKGHM--P--DVVAHTAV 128 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~----~~~--p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~~~~~l 128 (257)
..+...|++++|...+++..+. +.. |... .+-..+...|++++|...+++..+.... + ...+|..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 6677899999999999887752 222 3322 2556788999999999999987654221 1 23567788
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC---HHH
Q 043311 129 IEAYASAGQGKEALRVFMRMLASGVAPN--AYTYA----VLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN---AGT 199 (257)
Q Consensus 129 i~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~t~~----~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~ 199 (257)
-..+...|++++|...+++.....-.++ ..... .....+... |+++.|...++........++ ...
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT-----GDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHC-----CCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 8889999999999999998875311111 11111 223336674 449999999988765322111 235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhhcCCchhhHHhhhc
Q 043311 200 YTAVFEAFVRAQKVDEARGLLQQMKAK----GFVPDE-KAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 200 ~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+..+...+...|++++|...+++.... |..++. ..+..+-.++...|+.+.|...|+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 317 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL 317 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 667788899999999999999988643 322233 255556667889999999888764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.09 E-value=5.4e-05 Score=67.97 Aligned_cols=149 Identities=12% Similarity=-0.040 Sum_probs=124.0
Q ss_pred HhcCChHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 98 SKDGLTHEALQLFAQIK--------DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 98 ~~~~~~~~a~~~~~~m~--------~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
...|++++|.+.|+... +. ...+...|..+-.+|...|++++|...|++..+.+ +-+...|..+-..+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77899999999999987 32 23356788888899999999999999999998753 3477888888888988
Q ss_pred ccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCch
Q 043311 170 AADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248 (257)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 248 (257)
. |++++|.+.|++..+. .| +...|..+-..+.+.|++++ .+.|++..+.. .-+...+..+-.++...|+.
T Consensus 480 ~-----g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 480 T-----GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp H-----TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred c-----CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCH
Confidence 4 4499999999998764 34 56778889999999999999 99999998754 33677888899999999999
Q ss_pred hhHHhhhcC
Q 043311 249 GVINILFGK 257 (257)
Q Consensus 249 ~~~~~l~~k 257 (257)
+.|...|+|
T Consensus 551 ~~A~~~~~~ 559 (681)
T 2pzi_A 551 VGAVRTLDE 559 (681)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998875
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00017 Score=49.36 Aligned_cols=99 Identities=12% Similarity=0.005 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHH
Q 043311 121 DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200 (257)
Q Consensus 121 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 200 (257)
+...|..+-..+...|++++|...|++..+.. +.+...|..+...+... |++++|.+.++...+.. +.+...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~a~~~~-~~~~~~~ 87 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKL-----LEFQLALKDCEECIQLE-PTFIKGY 87 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTT-----TCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHhC-CCchHHH
Confidence 34455556666666666666666666665542 22455555555555553 33666666666655421 2244556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 201 TAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
..+-..+.+.|++++|.+.|++..+.
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 66666666666666666666666543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00025 Score=58.26 Aligned_cols=188 Identities=13% Similarity=0.052 Sum_probs=103.5
Q ss_pred cccCCCCHHHHHHHHHHHHhCCCCCcHH-------HHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHH
Q 043311 64 VDEEPTDPRNLQEIFHKMRTEGLTNNAV-------KMFDALSKDGLTHEALQLFAQIKDKGH-MPD----VVAHTAVIEA 131 (257)
Q Consensus 64 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~ 131 (257)
.+...|+++.|...++......-..+.. .+-..+...|++++|...+++..+... ..+ ..++..+-..
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 4445677777777777766543222211 133456667777777777776543210 011 1234555666
Q ss_pred HHhcCChHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCC--CCC--CHHHH
Q 043311 132 YASAGQGKEALRVFMRMLAS----GVA--P-NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG--MRP--NAGTY 200 (257)
Q Consensus 132 ~~~~~~~~~a~~~~~~m~~~----g~~--~-~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g--~~p--~~~~~ 200 (257)
+...|++++|...+++..+. +.. | ...++..+-..+...|+ +++|...+++..... ..+ ....|
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR-----LDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC-----HHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 77777777777777766532 211 2 23445555566666333 777777777655321 111 12456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHhhcCCchhhHHhhhc
Q 043311 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--EKAVK----EALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~----~ll~~~~~~g~~~~~~~l~~ 256 (257)
..+-..+...|++++|...+++.....-.++ ..... .....+...|+.+.+..+++
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 239 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLR 239 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6666777777788888777777764311111 11111 12233567777777766553
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00011 Score=54.63 Aligned_cols=154 Identities=10% Similarity=-0.111 Sum_probs=109.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcc
Q 043311 97 LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS----GVA-PNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~t~~~ll~~~~~~~ 171 (257)
....|++++|.++++.+... ......++..+-..+...|++++|...|++..+. |.. ....++..+-..+...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 35678999999966665442 2235678888889999999999999999887752 222 23467777888888855
Q ss_pred CCcchhHHHHHHHHHHHHh----CCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 043311 172 DGNAKILGDAQKYLMEMVG----KGMRP--NAGTYTAVFEAFVRAQKVDEARGLLQQMKAK----GFVP-DEKAVKEALI 240 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~----~g~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~ 240 (257)
+ +++|...+++... .+-.| ....+..+-..+...|++++|...+++.... +-.. -..++..+-.
T Consensus 81 ~-----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 155 (203)
T 3gw4_A 81 N-----WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGD 155 (203)
T ss_dssp C-----HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-----HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 5 9999988887653 33222 2457999999999999999999999988743 2111 1234566777
Q ss_pred HhhcCCchhhHHhhhc
Q 043311 241 DKRGQGFRGVINILFG 256 (257)
Q Consensus 241 ~~~~~g~~~~~~~l~~ 256 (257)
.+...|+.+.|...|+
T Consensus 156 ~~~~~g~~~~A~~~~~ 171 (203)
T 3gw4_A 156 LAQQEKNLLEAQQHWL 171 (203)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHH
Confidence 8899999999988775
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.06 E-value=7.5e-05 Score=60.09 Aligned_cols=172 Identities=16% Similarity=0.052 Sum_probs=119.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 043311 68 PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDK----GHMP-DVVAHTAVIEAYASAGQGKEAL 142 (257)
Q Consensus 68 ~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~ 142 (257)
.++++.|...|... ...|...|++++|.+.|....+. +-.. -..+|+.+-..|.+.|++++|.
T Consensus 29 ~~~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 96 (307)
T 2ifu_A 29 KPDYDSAASEYAKA------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAV 96 (307)
T ss_dssp SCCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGH
T ss_pred CCCHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 47888898888875 35677888888888888766542 2111 1357888888888889999998
Q ss_pred HHHHHHHHC----CCCC-CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHHcCC
Q 043311 143 RVFMRMLAS----GVAP-NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG----KGMRP-NAGTYTAVFEAFVRAQK 212 (257)
Q Consensus 143 ~~~~~m~~~----g~~~-~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g~~p-~~~~~~~li~~~~~~~~ 212 (257)
..|++-.+. |-.. -..+|+.+-..|.. |+ ++.|...|++..+ .|-.+ ...+++.+-..|.+.|+
T Consensus 97 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~-----~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 170 (307)
T 2ifu_A 97 QYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LD-----LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK 170 (307)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CC-----HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC
Confidence 888875532 2111 13567777777766 66 8888887776542 22222 26788888899999999
Q ss_pred HHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 213 VDEARGLLQQMKAK----GFVPD-EKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 213 ~~~a~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
+++|...|++.... +..++ ...+..+...+...|+.+.|...|++
T Consensus 171 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 171 FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999998888753 22222 23566666677778888888887753
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00029 Score=66.96 Aligned_cols=163 Identities=13% Similarity=0.206 Sum_probs=119.6
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHH-HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDAL-SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEA 141 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~-~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 141 (257)
..+...|.+++|..+|++.. .++. -+..+ -..+++++|.++.+... +..+|..+=.++.+.|++++|
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~----~~~~--A~~VLie~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFD----VNTS--AVQVLIEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcC----CHHH--HHHHHHHHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHH
Confidence 78889999999999999963 1221 12222 37889999999988652 478899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043311 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221 (257)
Q Consensus 142 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 221 (257)
.+.|.+- -|...|.-++..|.+.|+ ++++.++|..-.+.. ++....+.+..+|++.+++++...+.+
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGk-----yEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~ 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGN-----WEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh
Confidence 9999553 488899999999999555 999999998766543 333333347777888877775444421
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 222 QMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 222 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.++...|..+-..|...|+++.|..+|.+
T Consensus 1192 -------~~n~ad~~~iGd~le~eg~YeeA~~~Y~k 1220 (1630)
T 1xi4_A 1192 -------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 1220 (1630)
T ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 34555666666677777777777776653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00064 Score=54.08 Aligned_cols=157 Identities=8% Similarity=0.004 Sum_probs=114.7
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH--------HHHHHHHhcCChHHHHHHHHHHHhCCC---CCC--HHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV--------KMFDALSKDGLTHEALQLFAQIKDKGH---MPD--VVAHTAVI 129 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--------~ll~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~~~~~li 129 (257)
..+...|++++|.+.+....+........ .+...+...|++++|.+.|....+... .+. ..+|+.+-
T Consensus 83 ~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 162 (293)
T 2qfc_A 83 IMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIA 162 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 45678999999999998887754332211 144556778899999999998875321 122 45889999
Q ss_pred HHHHhcCChHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh----CCCCCC-HH
Q 043311 130 EAYASAGQGKEALRVFMRMLA---S-GVAP--NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG----KGMRPN-AG 198 (257)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~m~~---~-g~~~--~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~ 198 (257)
..|...|++++|...|++..+ . +-.+ ...+|..+-..|...|+ +++|...+++..+ .+.... ..
T Consensus 163 ~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-----y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-----YEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh-----HHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 999999999999999998762 2 1111 22688888889999555 9999999988653 222222 56
Q ss_pred HHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 043311 199 TYTAVFEAFVRAQKVDEA-RGLLQQMK 224 (257)
Q Consensus 199 ~~~~li~~~~~~~~~~~a-~~~~~~m~ 224 (257)
+|..+-..|.+.|+.++| ...+++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 788888999999999999 77777764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00049 Score=52.13 Aligned_cols=160 Identities=11% Similarity=-0.016 Sum_probs=118.7
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcC----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDG----LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS---- 134 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~---- 134 (257)
..+...+++++|.+.|+...+.|...-...|-..|.. + +.++|.+.|+...+.| +...+..|=..|..
T Consensus 26 ~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~ 101 (212)
T 3rjv_A 26 DTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAG 101 (212)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGS
T ss_pred HHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence 5555679999999999999998754333345555665 6 8999999999998865 67777777777777
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-C-
Q 043311 135 AGQGKEALRVFMRMLASGVA-PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA-Q- 211 (257)
Q Consensus 135 ~~~~~~a~~~~~~m~~~g~~-~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-~- 211 (257)
.+++++|+.+|++-.+.|.. .+...+..|-..|.. |.+..+.+++|..+|+...+. ..+...+..|-..|... |
T Consensus 102 ~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~-g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg 178 (212)
T 3rjv_A 102 ATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS-GVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKG 178 (212)
T ss_dssp SCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH-TSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTT
T ss_pred ccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCC
Confidence 78999999999999876532 125666666666665 111234499999999998765 23455666666677653 3
Q ss_pred ----CHHHHHHHHHHHHHCCCC
Q 043311 212 ----KVDEARGLLQQMKAKGFV 229 (257)
Q Consensus 212 ----~~~~a~~~~~~m~~~g~~ 229 (257)
+.++|...|++..+.|..
T Consensus 179 ~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 179 FIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp TBCCCHHHHHHHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHHcCCH
Confidence 899999999999988753
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00017 Score=52.61 Aligned_cols=121 Identities=10% Similarity=0.028 Sum_probs=73.5
Q ss_pred cccCCCCHHHHHHHHHHHHhCCC-CCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCh--
Q 043311 64 VDEEPTDPRNLQEIFHKMRTEGL-TNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA-YASAGQG-- 138 (257)
Q Consensus 64 ~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~-- 138 (257)
.+...|+++.|...++...+..- .+... .+-.+|...|++++|...|+...+.. +.+...|..+-.+ +...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 35567778888888777666432 22221 35666777788888888777776542 1245566666666 6677776
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC
Q 043311 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~ 191 (257)
++|...|++..+.+ +-+...|..+-..+...|+ ++.|...|+...+.
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQAN-----YAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccc-----HHHHHHHHHHHHhh
Confidence 77777777777653 2345666667677777443 77777777776653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0004 Score=47.14 Aligned_cols=112 Identities=13% Similarity=0.075 Sum_probs=85.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
+...+...|+++.|...|+...+.. +.+...|..+-..+...|++++|...+++..+.. +.+...|..+...+...|+
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 95 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNK 95 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCC
Confidence 5667788999999999999887652 2367788888889999999999999999988753 3457788888888888544
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 212 (257)
++.|...|+...... +.+...+..+...+.+.|+
T Consensus 96 -----~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 96 -----HVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp -----HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred -----HHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 999999998877642 2255667667777766665
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=7.2e-05 Score=53.48 Aligned_cols=100 Identities=9% Similarity=0.003 Sum_probs=51.5
Q ss_pred ccCCCCHHHHHHHHHHHHhCCCCCcH----HHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChH
Q 043311 65 DEEPTDPRNLQEIFHKMRTEGLTNNA----VKMFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 65 ~~~~~~~~~a~~~~~~m~~~~~~p~~----~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~ 139 (257)
+.+.|++++|...+...... .|+. ..+-..|.+.|++++|.+.|+...+. .| +..+|..+-.+|.+.|+++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchH
Confidence 34445555555555544432 2221 12455556666666666666655543 22 3455555555566666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
+|...|++..+.+ +-+...|..+-..+.+
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 6666665555432 2234555555555555
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00067 Score=46.81 Aligned_cols=95 Identities=13% Similarity=0.080 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 203 (257)
.|...=..|.+.|++++|...|++..+.. +.+...|..+-..+.+.|+ +++|.+.|+...+.. +.+...|..+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~-----~~~A~~~~~~al~~~-p~~~~a~~~l 87 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLME-----FQRALDDCDTCIRLD-SKFIKGYIRK 87 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhcc-----HHHHHHHHHHHHHhh-hhhhHHHHHH
Confidence 34444445556666666666666655432 2345555555555665333 666666666554421 1234455556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 043311 204 FEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 204 i~~~~~~~~~~~a~~~~~~m~~ 225 (257)
-.++...|++++|.+.|++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666666666666666655
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00039 Score=56.74 Aligned_cols=124 Identities=15% Similarity=0.056 Sum_probs=101.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPD--------------VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 158 (257)
+-..|.+.|++++|...|+...+...... ...|..+-.+|.+.|++++|...|++..+.. +.+..
T Consensus 153 ~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 231 (336)
T 1p5q_A 153 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEK 231 (336)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHH
Confidence 66778899999999999999887532221 5889999999999999999999999998764 44788
Q ss_pred HHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 043311 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEA-RGLLQQMK 224 (257)
Q Consensus 159 t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a-~~~~~~m~ 224 (257)
.|..+-.++...|+ +++|...|+...+. .| +...+..+-..+.+.|+.+++ ..+|+.|.
T Consensus 232 a~~~lg~~~~~~g~-----~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 232 GLSRRGEAHLAVND-----FELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHTTC-----HHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-----HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999555 99999999998764 34 567788888899999999988 44666664
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00014 Score=52.01 Aligned_cols=139 Identities=9% Similarity=-0.023 Sum_probs=104.3
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcc
Q 043311 97 LSKDGLTHEALQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175 (257)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~ 175 (257)
+...|++++|+..|...... .|+ ...+-.+=..|.+.|++++|...|++..+.. +-+...|..+-..+...|+
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~--- 80 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN--- 80 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC---
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc---
Confidence 34567788888888876553 333 4456677788999999999999999998763 4478899999999999555
Q ss_pred hhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHCCCCC-CHHHHHHHHHHhhcCCc
Q 043311 176 KILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGL-LQQMKAKGFVP-DEKAVKEALIDKRGQGF 247 (257)
Q Consensus 176 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~-~~~m~~~g~~p-~~~t~~~ll~~~~~~g~ 247 (257)
+++|...|+...+. .| +...|..+-..|.+.|+++++.+. +++..+. .| +...|...-..+...|+
T Consensus 81 --~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 --TDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp --HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred --hHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 99999999998763 45 467888899999999999876665 5777663 45 45555555555666664
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00027 Score=51.50 Aligned_cols=121 Identities=12% Similarity=0.043 Sum_probs=92.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhccCCcch
Q 043311 98 SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG-LAAAADGNAK 176 (257)
Q Consensus 98 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~-~~~~~~~~~~ 176 (257)
...|++++|...|+...+.. +.+...|..+-..|...|++++|...|++..+.. +.+...|..+... +... |
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~-----~ 93 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQA-----S 93 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHT-----T
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc-----C
Confidence 45678888888888876642 2467889999999999999999999999988753 3367777777777 6674 4
Q ss_pred hH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 177 IL--GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 177 ~~--~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
.+ ++|...|+...... +-+...+..+-..|...|++++|...|++..+.
T Consensus 94 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp TCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 47 99999999887642 224677888888999999999999999999876
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0015 Score=43.27 Aligned_cols=98 Identities=15% Similarity=0.072 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHH
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 201 (257)
...|..+-..+...|++++|...|++..... +.+...|..+...+...|+ +++|...++...+.. +.+...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~-----~~~A~~~~~~~~~~~-~~~~~~~~ 76 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGD-----YQKAYEDGCKTVDLK-PDWGKGYS 76 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhcc-----HHHHHHHHHHHHHhC-cccHHHHH
Confidence 3445555566666666666666666665542 2245556666666666333 666666666655431 12345566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 202 AVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
.+...+...|++++|.+.+++..+.
T Consensus 77 ~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 77 RKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 6666666677777777777666553
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00053 Score=46.84 Aligned_cols=110 Identities=10% Similarity=0.015 Sum_probs=82.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
+-..+.+.|++++|.+.|+...+.. ..+...|..+-..|...|++++|...|++..+.. +.+...|..+-..+...|+
T Consensus 22 ~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~ 99 (133)
T 2lni_A 22 KGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKD 99 (133)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhh
Confidence 6677788999999999999887752 2367788888888999999999999999888753 3467888888888888444
Q ss_pred CcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQ 211 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~ 211 (257)
+++|.+.|+...+. .| +...+..+-..+.+.|
T Consensus 100 -----~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 100 -----YTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp -----HHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 99999999887653 23 3345555555555443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00036 Score=59.08 Aligned_cols=183 Identities=10% Similarity=0.012 Sum_probs=81.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc--------
Q 043311 67 EPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPD-VVAHTAVIEAYASA-------- 135 (257)
Q Consensus 67 ~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~-------- 135 (257)
..+++++|.+.++........ +.. ..+-..|.+.|++++|.+.|+...+. .|+ ..+|..+-.+|...
T Consensus 225 ~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~ 302 (472)
T 4g1t_A 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLR 302 (472)
T ss_dssp -----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHH
Confidence 345555666666555543211 111 13455556666666666666665543 222 23333333322211
Q ss_pred -----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHH--HHHH
Q 043311 136 -----------GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG--TYTA 202 (257)
Q Consensus 136 -----------~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ 202 (257)
+..+.|...|+...+.+ +.+..+|..+-..+.. .|++++|.+.|+...+....+... .+..
T Consensus 303 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~-----~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~ 376 (472)
T 4g1t_A 303 ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHAL-----ADQYEEAEYYFQKEFSKELTPVAKQLLHLR 376 (472)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHH-----TTCHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHH-----hccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 12344555555544332 2233445555555555 333777777777766543222111 1111
Q ss_pred HH-HHHHHcCCHHHHHHHHHHHHHCC-----------------------CCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 203 VF-EAFVRAQKVDEARGLLQQMKAKG-----------------------FVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 203 li-~~~~~~~~~~~a~~~~~~m~~~g-----------------------~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
+- -.....|+.++|...|++...-. -+.+..++..+=..+...|+.+.|...|+|
T Consensus 377 ~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~k 455 (472)
T 4g1t_A 377 YGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSER 455 (472)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11 12234567777777766655421 022345566666667777777777777664
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0016 Score=54.37 Aligned_cols=187 Identities=6% Similarity=-0.007 Sum_probs=129.2
Q ss_pred cccCCCCHHHHHHHHHHHHhCCCCCc-------------------HHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHH
Q 043311 64 VDEEPTDPRNLQEIFHKMRTEGLTNN-------------------AVKMFDALSKDGLTHEALQLFAQIKDK-GHMPDVV 123 (257)
Q Consensus 64 ~~~~~~~~~~a~~~~~~m~~~~~~p~-------------------~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~ 123 (257)
.+.+.|++++|.+.|....+..-... ...+...|.+.|++++|.+++....+. +..++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 45567999999999999987433211 124788999999999999999877543 1112221
Q ss_pred ---HHHHHHH-HHHhcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC---
Q 043311 124 ---AHTAVIE-AYASAGQGKEALRVFMRMLA----SGVAP-NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK--- 191 (257)
Q Consensus 124 ---~~~~li~-~~~~~~~~~~a~~~~~~m~~----~g~~~-~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~--- 191 (257)
.....+. .+...|+.+.+..+++.... .+..+ -..++..+...+.. .|.+++|..++++....
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~l~~~~~~~~~ 167 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ-----KKQYKDSLALINDLLREFKK 167 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH-----ccChHHHHHHHHHHHHHHHh
Confidence 2222333 33446789999999987653 23333 35678888889988 44499999999987631
Q ss_pred -CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHhhcCCchhhHHhhh
Q 043311 192 -GMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAK--GFVPD----EKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 192 -g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~----~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
+-.+ ....|..++..|...|++++|..++++.... .+..+ ...+..+...+...|+++.|...|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 168 LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 1122 2357888999999999999999999987643 22222 345556666788899998888766
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0005 Score=47.46 Aligned_cols=96 Identities=11% Similarity=0.047 Sum_probs=77.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
.=..|.+.|++++|.+.|++..+.. +.+...|..+-.+|.+.|++++|...|++..+.+ +.+...|..+-..+...|+
T Consensus 19 ~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 96 (126)
T 4gco_A 19 KGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMRE 96 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCC
Confidence 4567889999999999999887642 2367888889999999999999999999988763 4467888888889998555
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCH
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRPNA 197 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p~~ 197 (257)
+++|.+.|+...+. .|+.
T Consensus 97 -----~~~A~~~~~~al~l--~P~~ 114 (126)
T 4gco_A 97 -----WSKAQRAYEDALQV--DPSN 114 (126)
T ss_dssp -----HHHHHHHHHHHHHH--CTTC
T ss_pred -----HHHHHHHHHHHHHH--CcCC
Confidence 99999999988763 4543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0004 Score=47.20 Aligned_cols=108 Identities=11% Similarity=0.110 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCC--CCCC----
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG--MRPN---- 196 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g--~~p~---- 196 (257)
..|..+-..+...|++++|...|++..+.. +.+...|..+...+...|+ +++|...++...... ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~-----~~~A~~~~~~~~~~~~~~~~~~~~~ 78 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGD-----YNKCRELCEKAIEVGRENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHhhccccchhHHHH
Confidence 345555566666666666666666665542 3355566666666666333 666666666655321 1112
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043311 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEA 238 (257)
Q Consensus 197 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 238 (257)
...|..+-..+...|++++|.+.|++..+. .|+......+
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 445666666677777777777777777664 3454444433
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00059 Score=48.90 Aligned_cols=100 Identities=11% Similarity=-0.051 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHH
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYT 201 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~ 201 (257)
..+..+=..+.+.|++++|...|++..+.. +-+...|..+-..+...| ++++|...|+..... .| +...|.
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g-----~~~~Ai~~~~~al~l--~P~~~~~~~ 108 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKE-----QFQQAADLYAVAFAL--GKNDYTPVF 108 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHH--SSSCCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHc-----cHHHHHHHHHHHHhh--CCCCcHHHH
Confidence 455566666777777777777777777653 335667777777777733 377777777776653 23 345666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 043311 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232 (257)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 232 (257)
.+-.+|.+.|++++|...|++..+. .|+.
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l--~~~~ 137 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQH--SNDE 137 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCH
Confidence 6777777777777777777777764 3554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00046 Score=45.53 Aligned_cols=97 Identities=14% Similarity=0.017 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC--CHHHH
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP--NAGTY 200 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~ 200 (257)
..|..+-..+...|++++|...|++..+.. +.+...|..+-..+...| ++++|.+.|+...+.. +. +...+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~a~~~~-~~~~~~~~~ 79 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLE-----RYEEAVDCYNYVINVI-EDEYNKDVW 79 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTS-CCTTCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHHhC-cccchHHHH
Confidence 344455555556666666666666555432 224455555555555533 3666666666555431 11 34555
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHC
Q 043311 201 TAVFEAFVRA-QKVDEARGLLQQMKAK 226 (257)
Q Consensus 201 ~~li~~~~~~-~~~~~a~~~~~~m~~~ 226 (257)
..+...+.+. |++++|.+.+++....
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 5555666666 6666666666665543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0014 Score=45.19 Aligned_cols=98 Identities=11% Similarity=-0.048 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHH
Q 043311 121 DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200 (257)
Q Consensus 121 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 200 (257)
+...|..+-..+...|++++|...|++..+.. +.+...|..+-..+...|+ ++.|...++...... +-+...|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~al~~~-p~~~~~~ 80 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQ-----PEQALADCRRALELD-GQSVKAH 80 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcC-----HHHHHHHHHHHHHhC-chhHHHH
Confidence 45666666777777777777777777766543 3356666777777777443 777777777666532 2245566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 201 TAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
..+-..+...|++++|...|++..+
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6677777777777777777777654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.003 Score=43.84 Aligned_cols=96 Identities=15% Similarity=0.033 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCH
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN----AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 197 (257)
...+..+-..+...|++++|...|++..+. .|+ ...|..+-..+...++ +++|...++...+.. +.+.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~-----~~~A~~~~~~~~~~~-~~~~ 99 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLED-----YDKAETEASKAIEKD-GGDV 99 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHT-SCCH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHcc-----HHHHHHHHHHHHhhC-ccCH
Confidence 344444555555555555555555555442 233 3444445555555222 555555555544321 1133
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 198 GTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
..+..+-..+...|++++|...|++...
T Consensus 100 ~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 100 KALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555555666666666655554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0017 Score=44.29 Aligned_cols=95 Identities=14% Similarity=0.125 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 203 (257)
.|..+=..+.+.|++++|...|++..+.. +.+...|..+-..+.+.|+ +++|...|+...+.. +-+...|..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~-----~~~A~~~~~~al~~~-p~~~~~~~~l 78 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMS-----FPEAIADCNKAIEKD-PNFVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcC-----HHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 34444445555666666666665555432 2245555555555555333 666666665555421 1134455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 043311 204 FEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 204 i~~~~~~~~~~~a~~~~~~m~~ 225 (257)
-.++...|++++|...|++..+
T Consensus 79 g~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHH
Confidence 5566666666666666666554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0015 Score=46.45 Aligned_cols=95 Identities=12% Similarity=-0.059 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 203 (257)
.+..+-..+...|++++|...|+.....+ +.+...|..+-..+...| ++++|...|+...... +-+...|..+
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~l~-p~~~~~~~~l 95 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMG-----QYDLAIHSYSYGAVMD-IXEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHS-TTCTHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHhcC-CCCchHHHHH
Confidence 34444445555555555555555554432 224445555555555522 2555555555544321 1133444445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 043311 204 FEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 204 i~~~~~~~~~~~a~~~~~~m~~ 225 (257)
-.+|...|++++|...|++..+
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0014 Score=54.74 Aligned_cols=160 Identities=9% Similarity=-0.019 Sum_probs=111.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKGHMPD----------------VVAHTAVIEAYASAGQGKEALRVFMRMLAS-GVAPN 156 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~ 156 (257)
...+.+.|++++|.+.|....+...... ...+..+...|.+.|++++|.+++...... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4566889999999999999887532211 124778899999999999999999887643 11222
Q ss_pred HHHH---HHHHHHHHhccCCcchhHHHHHHHHHHHH----hCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--
Q 043311 157 AYTY---AVLIKGLAAAADGNAKILGDAQKYLMEMV----GKGMRPN-AGTYTAVFEAFVRAQKVDEARGLLQQMKAK-- 226 (257)
Q Consensus 157 ~~t~---~~ll~~~~~~~~~~~~~~~~a~~~~~~m~----~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-- 226 (257)
..+- ...+..+.. ..|..+.+.++++... ..+..+. ..++..+...|...|++++|..++++....
T Consensus 91 ~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQ----VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp HHHHHHHHHHHHHHCS----CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 2222 222222221 1345888888877664 2333343 457788899999999999999999998753
Q ss_pred CCC--C-CHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 227 GFV--P-DEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 227 g~~--p-~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
+.. + ....+..+...|...|+.++|..+++|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 200 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTA 200 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 221 1 245778888899999999999988753
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00087 Score=54.64 Aligned_cols=126 Identities=11% Similarity=-0.028 Sum_probs=101.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhccCCcchhHHHHHHHHH
Q 043311 121 DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN--------------AYTYAVLIKGLAAAADGNAKILGDAQKYLM 186 (257)
Q Consensus 121 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--------------~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~ 186 (257)
+...|..+=..|.+.|++++|...|++..+..-... ...|..+-..+.+.|+ +++|...++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~-----~~~A~~~~~ 220 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA-----FSAAIESCN 220 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHH
Confidence 356788888899999999999999999887532211 5889999999999555 999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHh
Q 043311 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINI 253 (257)
Q Consensus 187 ~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 253 (257)
...+.. +.+...|..+-.+|...|++++|...|++..+.. +-+...+..+-..+...|+.+.+++
T Consensus 221 ~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 221 KALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 988642 2367788889999999999999999999998753 2356778888888888888887743
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0014 Score=47.11 Aligned_cols=91 Identities=14% Similarity=0.051 Sum_probs=58.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
+-..+.+.|++++|.+.|+...+.. +-+...|..+-.+|.+.|++++|...|++..+.. +-+...|..+-..+...|+
T Consensus 17 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 94 (164)
T 3sz7_A 17 EGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFDMAD 94 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccC
Confidence 4556667777777777777766542 1255666677777777777777777777766543 2346666666666666433
Q ss_pred CcchhHHHHHHHHHHHHh
Q 043311 173 GNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~ 190 (257)
+++|...|+...+
T Consensus 95 -----~~~A~~~~~~al~ 107 (164)
T 3sz7_A 95 -----YKGAKEAYEKGIE 107 (164)
T ss_dssp -----HHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHH
Confidence 7777777776654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0013 Score=46.20 Aligned_cols=89 Identities=11% Similarity=-0.061 Sum_probs=38.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043311 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208 (257)
Q Consensus 129 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (257)
-..+.+.|++++|...|++....+ +.+...|..+-..+...|+ +++|...|+...... +-+...|..+-.+|.
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~-----~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGL-----YEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 334444445555555554444331 2234444444444444222 455555444444321 112233444444444
Q ss_pred HcCCHHHHHHHHHHHH
Q 043311 209 RAQKVDEARGLLQQMK 224 (257)
Q Consensus 209 ~~~~~~~a~~~~~~m~ 224 (257)
..|++++|...|++..
T Consensus 98 ~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 98 QLGDLDGAESGFYSAR 113 (142)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555554444
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0012 Score=49.03 Aligned_cols=127 Identities=13% Similarity=0.051 Sum_probs=85.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC-CCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGH-MPD--------------VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 157 (257)
+-..+.+.|++++|.+.|+...+... .|+ ...|..+-.+|.+.|++++|...+++..+.. +.+.
T Consensus 44 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~ 122 (198)
T 2fbn_A 44 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNV 122 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccH
Confidence 55677889999999999998876421 111 2678888888899999999999999888753 4467
Q ss_pred HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHCC
Q 043311 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEAR-GLLQQMKAKG 227 (257)
Q Consensus 158 ~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~g 227 (257)
..|..+-.++...|+ ++.|...|+...+. .| +...+..+-..+...++..++. ..+..|...|
T Consensus 123 ~~~~~lg~~~~~~~~-----~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 123 KALYKLGVANMYFGF-----LEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHHHHHHHTC-----HHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHccc-----HHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 788888888888444 99999999887753 33 4556777777777777666666 4555555443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0011 Score=59.21 Aligned_cols=183 Identities=10% Similarity=0.042 Sum_probs=119.4
Q ss_pred ccCCCCHHHHH-HHHHHHHhCCCCCcHH----HHHHHHHhcCChHHHHHHHHHHHhCCC---------CCC---------
Q 043311 65 DEEPTDPRNLQ-EIFHKMRTEGLTNNAV----KMFDALSKDGLTHEALQLFAQIKDKGH---------MPD--------- 121 (257)
Q Consensus 65 ~~~~~~~~~a~-~~~~~m~~~~~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~---------~p~--------- 121 (257)
+.+.|+.+.|. ++|+..... .|... ..+...-+.|+++.|.++|+.+.+... .|+
T Consensus 353 ~~~~~~~~~a~r~il~rAi~~--~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~ 430 (679)
T 4e6h_A 353 QGEKNTDSTVITKYLKLGQQC--IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLK 430 (679)
T ss_dssp HHHHSCCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhc
Confidence 34556777775 888777652 23322 345556678888888888888775310 131
Q ss_pred ---HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC
Q 043311 122 ---VVAHTAVIEAYASAGQGKEALRVFMRMLAS-G-VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196 (257)
Q Consensus 122 ---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g-~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 196 (257)
..+|-..+....+.|+++.|..+|....+. + ..+......+.+.- +. .+..+.|.++|+...+. ++-+
T Consensus 431 ~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~--~~----~~d~e~Ar~ife~~Lk~-~p~~ 503 (679)
T 4e6h_A 431 SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY--HI----SKDTKTACKVLELGLKY-FATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH--TT----TSCCHHHHHHHHHHHHH-HTTC
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH--Hh----CCCHHHHHHHHHHHHHH-CCCc
Confidence 236777788778888888899998888765 2 22333333333331 21 12278888888877654 3335
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP--DEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 197 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
...|...++-....|+.+.|..+|++.....-.+ ....|...+.--...|+.+.+.++.+
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5667777787778888999999999887654222 34567777777777888888877764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0043 Score=52.68 Aligned_cols=175 Identities=13% Similarity=0.089 Sum_probs=109.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCC---------------------------------------hHHHHHH
Q 043311 69 TDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGL---------------------------------------THEALQL 109 (257)
Q Consensus 69 ~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~---------------------------------------~~~a~~~ 109 (257)
+++++|.+.|+...+.|...-...|-..|...+. .+.+..+
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 3788899999888887765544444444433322 1222222
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHH
Q 043311 110 FAQIKDKGHMPDVVAHTAVIEAYASAG---QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186 (257)
Q Consensus 110 ~~~m~~~g~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~ 186 (257)
+.... ..+...+..|-..|.+.| +.++|+..|++-.+.| .++...+..+-..|.. |.+..+..++|..+|+
T Consensus 168 ~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~-g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 168 CKAAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGD-ATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTC-GGGSSCCHHHHHHHHH
T ss_pred HHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC-CCCCCCCHHHHHHHHH
Confidence 22222 223447777777888888 8899999998888876 4455554555555533 2222345888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC-----chhhHHhhhcC
Q 043311 187 EMVGKGMRPNAGTYTAVFEA-F--VRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG-----FRGVINILFGK 257 (257)
Q Consensus 187 ~m~~~g~~p~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-----~~~~~~~l~~k 257 (257)
... .| +...+..|-.. + ...+++++|.+.|++..+.| +...+..+-..|. .| +.++|...|+|
T Consensus 242 ~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 242 KIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 876 32 34444444444 3 45788999999999988877 4555555555554 44 78888877764
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0017 Score=42.69 Aligned_cols=92 Identities=12% Similarity=-0.035 Sum_probs=55.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP--NAYTYAVLIKGLAAA 170 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~t~~~ll~~~~~~ 170 (257)
+-..+.+.|++++|...|+...+.. ..+...|..+-..+...|++++|...|++..+.. +. +...|..+...+...
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHH
Confidence 4455566666666766666665532 2245566666666667777777777776666542 22 456666666666663
Q ss_pred -cCCcchhHHHHHHHHHHHHhC
Q 043311 171 -ADGNAKILGDAQKYLMEMVGK 191 (257)
Q Consensus 171 -~~~~~~~~~~a~~~~~~m~~~ 191 (257)
|+ +++|.+.++.....
T Consensus 90 ~~~-----~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 90 EGK-----EVEAEIAEARAKLE 106 (112)
T ss_dssp SSC-----SHHHHHHHHHHGGG
T ss_pred hCC-----HHHHHHHHHHHhhc
Confidence 33 66777776666543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0014 Score=58.56 Aligned_cols=177 Identities=11% Similarity=0.063 Sum_probs=121.0
Q ss_pred HHHHHHHHHHh-CCCCCcHH-HHHHHHHhcCChHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043311 73 NLQEIFHKMRT-EGLTNNAV-KMFDALSKDGLTHEAL-QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149 (257)
Q Consensus 73 ~a~~~~~~m~~-~~~~p~~~-~ll~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 149 (257)
.+..+|++... .+..|+.. .....+.+.|+.++|. ++|+..... .+.+...|-..+...-+.|+++.|.++|+.+.
T Consensus 327 Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455665554 22333322 2444556678888896 999988764 34466778888999999999999999999988
Q ss_pred HCC---------CCCC------------HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 043311 150 ASG---------VAPN------------AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK-GMRPNAGTYTAVFEAF 207 (257)
Q Consensus 150 ~~g---------~~~~------------~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~ 207 (257)
+.. -.|+ ...|...++...+. |..+.|..+|....+. +. ++...|......-
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~-----~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE 479 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI-----QGLAASRKIFGKCRRLKKL-VTPDIYLENAYIE 479 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH-----HCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHH
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 641 0132 34688888877774 4499999999998765 21 1233333222222
Q ss_pred HHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 208 VRA-QKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 208 ~~~-~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.+. ++.+.|.++|++..+. +.-+..-+...+.-....|+.+.|..+|++
T Consensus 480 ~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lfer 529 (679)
T 4e6h_A 480 YHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFES 529 (679)
T ss_dssp HTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 333 4589999999999986 334555666777777788999999999864
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0048 Score=40.72 Aligned_cols=92 Identities=15% Similarity=0.069 Sum_probs=73.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
+...+...|++++|...|+...+.. +.+...|..+-..+...|++++|...+++..+.. +.+...|..+...+...|+
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~ 87 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 87 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhh
Confidence 5667788999999999999887652 2367788888888999999999999999888753 3367788888888888444
Q ss_pred CcchhHHHHHHHHHHHHhC
Q 043311 173 GNAKILGDAQKYLMEMVGK 191 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~ 191 (257)
+++|.+.++...+.
T Consensus 88 -----~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 88 -----FEEAKRTYEEGLKH 101 (118)
T ss_dssp -----HHHHHHHHHHHHTT
T ss_pred -----HHHHHHHHHHHHHc
Confidence 99999999888764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0012 Score=55.75 Aligned_cols=154 Identities=14% Similarity=0.004 Sum_probs=98.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC-------
Q 043311 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD------- 172 (257)
Q Consensus 100 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~------- 172 (257)
.+++++|.++|+...+.. +.+..++..+-..|...|++++|...|++..+.. +-+..+|..+-..|...+.
T Consensus 226 ~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~ 303 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRE 303 (472)
T ss_dssp ----CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHH
Confidence 356677888887766542 3456778888889999999999999999988753 3355566655444432111
Q ss_pred -------CcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-Hh
Q 043311 173 -------GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK--AVKEALI-DK 242 (257)
Q Consensus 173 -------~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--t~~~ll~-~~ 242 (257)
...+..+.|...|+...+.. +.+...+..+-..|...|++++|...|++..+....+... .+..+-. ..
T Consensus 304 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 304 NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 00123567777777765431 2245678888899999999999999999998865433321 1222211 23
Q ss_pred hcCCchhhHHhhhc
Q 043311 243 RGQGFRGVINILFG 256 (257)
Q Consensus 243 ~~~g~~~~~~~l~~ 256 (257)
...|+.+.|...|.
T Consensus 383 ~~~~~~~~Ai~~y~ 396 (472)
T 4g1t_A 383 YQMKCEDKAIHHFI 396 (472)
T ss_dssp HTSSCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHH
Confidence 46788888877664
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0029 Score=45.18 Aligned_cols=97 Identities=11% Similarity=-0.008 Sum_probs=80.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
+-..+.+.|++++|...|+...+.. +-+...|..+=.+|...|++++|...|++..+.. +-+...|..+-.++...|+
T Consensus 42 lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~ 119 (151)
T 3gyz_A 42 YAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKA 119 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 5667889999999999999998752 2357889999999999999999999999998763 3356888888899999544
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCHH
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRPNAG 198 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p~~~ 198 (257)
+++|...|+...+. .|+..
T Consensus 120 -----~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 120 -----PLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp -----HHHHHHHHHHHHHH--CCCHH
T ss_pred -----HHHHHHHHHHHHHh--CCCHH
Confidence 99999999998864 45653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0034 Score=42.72 Aligned_cols=91 Identities=11% Similarity=-0.009 Sum_probs=72.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
.-..+.+.|++++|...|+...+.. +.+...|..+-.+|.+.|++++|...|++..+.+ +-+...|..+-..+...|+
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhC
Confidence 4456788999999999999887752 2357888888899999999999999999988763 3367788888888888544
Q ss_pred CcchhHHHHHHHHHHHHh
Q 043311 173 GNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~ 190 (257)
+++|...|+...+
T Consensus 88 -----~~~A~~~~~~al~ 100 (126)
T 3upv_A 88 -----YASALETLDAART 100 (126)
T ss_dssp -----HHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHH
Confidence 9999999888765
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00065 Score=47.85 Aligned_cols=128 Identities=15% Similarity=0.046 Sum_probs=90.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHM-PD----VVAHTAVIEAYASAGQGKEALRVFMRMLAS----GVAP-NAYTYAV 162 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~t~~~ 162 (257)
+-..+...|++++|...|.+..+.... ++ ..++..+-..+...|++++|...|++..+. +-.+ ....+..
T Consensus 15 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 94 (164)
T 3ro3_A 15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 94 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 556777889999999998877653111 11 247888888899999999999999887643 1111 1456667
Q ss_pred HHHHHHhccCCcchhHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 163 LIKGLAAAADGNAKILGDAQKYLMEMVG----KGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 163 ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
+-..+...|+ +++|.+.+++..+ .+..+ ....+..+-..+...|++++|.+.+++..+
T Consensus 95 l~~~~~~~~~-----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 95 LGNTYTLLQD-----YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-----HHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7777777444 8999988887653 22111 134577788888999999999999988764
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0045 Score=45.89 Aligned_cols=151 Identities=7% Similarity=-0.056 Sum_probs=97.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-C---C-----------HH
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA-P---N-----------AY 158 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~---~-----------~~ 158 (257)
.......|+++.+.+.|+.-.+. ..-....+..+-..+.+.|++++|...|++..+..-. | . ..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp -----------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 33344455555555555422111 0012455667777889999999999999998875211 1 1 27
Q ss_pred HHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043311 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEA 238 (257)
Q Consensus 159 t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 238 (257)
.|..+-..+...|+ +++|...++...... +.+...|..+-.+|...|++++|.+.|++..+.. +-+...+..+
T Consensus 90 ~~~~la~~~~~~~~-----~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 162 (198)
T 2fbn_A 90 CNLNLATCYNKNKD-----YPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSY 162 (198)
T ss_dssp HHHHHHHHHHHTTC-----HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHHHHHhcC-----HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHH
Confidence 88888888888544 999999999887642 3356788888899999999999999999998753 2245566666
Q ss_pred HHHhhcCCchhhHH
Q 043311 239 LIDKRGQGFRGVIN 252 (257)
Q Consensus 239 l~~~~~~g~~~~~~ 252 (257)
-..+...|....++
T Consensus 163 ~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 163 ELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0011 Score=44.94 Aligned_cols=105 Identities=12% Similarity=0.130 Sum_probs=79.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCC----HHHHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV--APN----AYTYAVLIKG 166 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~~----~~t~~~ll~~ 166 (257)
+-..+...|+++.|...|+...+.. +.+...|..+-..|...|++++|...|++..+... .++ ..+|..+...
T Consensus 10 l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 88 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHH
Confidence 5667788999999999999887753 34677888888899999999999999998876521 222 6778888888
Q ss_pred HHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043311 167 LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205 (257)
Q Consensus 167 ~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 205 (257)
+...|+ ++.|.+.|+...+. .|+......+-.
T Consensus 89 ~~~~~~-----~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 89 YFKEEK-----YKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHTTC-----HHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHhcc-----HHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 888544 99999999988764 356554444433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.002 Score=44.39 Aligned_cols=106 Identities=13% Similarity=0.098 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC--CCCCC----H
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK--GMRPN----A 197 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~--g~~p~----~ 197 (257)
.+..+=..+.+.|++++|...|++..+.. +-+...|..+-..|...|+ +++|.+.++...+. ...++ .
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~-----~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKK-----FAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhh-----HHHHHHHHHHHHHhCcccchhhHHHH
Confidence 34444555666666666666666665542 2345566666666666333 66666666655431 01111 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 043311 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKE 237 (257)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 237 (257)
.+|..+=..+...|++++|.+.|++.... .||..+...
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 24555556677778888888888887653 466555443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0083 Score=50.93 Aligned_cols=154 Identities=12% Similarity=0.032 Sum_probs=104.2
Q ss_pred ccccCCC---CHHHHHHHHHHHHhCCCCCcH--HHHHHHHHhc----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H
Q 043311 63 VVDEEPT---DPRNLQEIFHKMRTEGLTNNA--VKMFDALSKD----GLTHEALQLFAQIKDKGHMPDVVAHTAVIEA-Y 132 (257)
Q Consensus 63 ~~~~~~~---~~~~a~~~~~~m~~~~~~p~~--~~ll~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~ 132 (257)
.++...| ++++|.+.|+...+.|..... ..+-..|... +++++|.+.|+... . -+...+..|=.. |
T Consensus 184 ~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~ 259 (452)
T 3e4b_A 184 TVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLY 259 (452)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHH
T ss_pred HHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHH
Confidence 5556677 888889988888888765555 3455555443 58888999888877 3 244555555444 3
Q ss_pred --HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-
Q 043311 133 --ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR- 209 (257)
Q Consensus 133 --~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~- 209 (257)
...++.++|..+|++-.+.| +...+..+-..|. .|.+...++++|.+.|+... . -+...+..|-..|..
T Consensus 260 ~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G 331 (452)
T 3e4b_A 260 DFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRG 331 (452)
T ss_dssp HSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTT
T ss_pred hCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCC
Confidence 45788999999999888776 5666666666665 34222335888888887765 3 245555555555554
Q ss_pred ---cCCHHHHHHHHHHHHHCCC
Q 043311 210 ---AQKVDEARGLLQQMKAKGF 228 (257)
Q Consensus 210 ---~~~~~~a~~~~~~m~~~g~ 228 (257)
..+.++|...|++..+.|.
T Consensus 332 ~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 332 YLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp TTSSCCHHHHHHHHHHHHTTTC
T ss_pred CCCCcCHHHHHHHHHHHHhhCh
Confidence 3388888888888887764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0063 Score=48.93 Aligned_cols=211 Identities=6% Similarity=-0.020 Sum_probs=146.1
Q ss_pred cchhhcccCCCCCCcccccc---ccccCCC--CHHHHHHHHHHHHhCCCCCcH-H----HHHHHH-Hhc---CChHHHHH
Q 043311 43 TKKYVNTKSKLPPPYDPFKK---VVDEEPT--DPRNLQEIFHKMRTEGLTNNA-V----KMFDAL-SKD---GLTHEALQ 108 (257)
Q Consensus 43 ~~~~~~~~~~~~p~~~~~~~---~~~~~~~--~~~~a~~~~~~m~~~~~~p~~-~----~ll~~~-~~~---~~~~~a~~ 108 (257)
+.....+.-.+.|+..+.=. .++...| ++++++++++.+......... . -++..+ .+. ++++++++
T Consensus 52 aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~ 131 (306)
T 3dra_A 52 ALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFD 131 (306)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred HHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 33445555566677655433 5556667 999999999999985433332 2 144222 333 78999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC-CcchhHHHHHHHH
Q 043311 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGK--EALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-GNAKILGDAQKYL 185 (257)
Q Consensus 109 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~-~~~~~~~~a~~~~ 185 (257)
+++.+.+.. +-+-.+|+----.+.+.|+++ ++++.++++.+.+.. |...|+---..+...+. .....++++.+.+
T Consensus 132 ~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~ 209 (306)
T 3dra_A 132 ILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYV 209 (306)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence 999998752 346778888888888888888 999999999987644 88888876666655332 1122378888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHCC--CCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVD-EARGLLQQMKAKG--FVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 186 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+...... +-|...|+-+-..+.+.|+.. .+..+..++.+.+ -..+...+..+...+...|+.++|.++++
T Consensus 210 ~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 210 KDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 8777542 237778888877787877643 3555666655432 13477888888888888999999888875
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0033 Score=43.98 Aligned_cols=91 Identities=12% Similarity=-0.037 Sum_probs=71.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
+-..+.+.|++++|...|+...+.. +.+...|..+-.+|...|++++|...|++..+.+ +-+...|..+-..+...|+
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 5567788899999999999887642 2356778888888899999999999999888763 3456777778888888444
Q ss_pred CcchhHHHHHHHHHHHHh
Q 043311 173 GNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~ 190 (257)
+++|.+.|+...+
T Consensus 102 -----~~~A~~~~~~al~ 114 (142)
T 2xcb_A 102 -----LDGAESGFYSARA 114 (142)
T ss_dssp -----HHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHH
Confidence 9999999888764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0076 Score=41.73 Aligned_cols=90 Identities=16% Similarity=0.008 Sum_probs=55.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPD----VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~ 168 (257)
+-..+.+.|++++|.+.|+...+. .|+ ...|..+-.+|...|++++|...|++..+.. +.+...|..+-..+.
T Consensus 34 ~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 110 (148)
T 2dba_A 34 EGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALE 110 (148)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHH
Confidence 445556667777777777766653 344 4566666666777777777777776666542 224556666666666
Q ss_pred hccCCcchhHHHHHHHHHHHHh
Q 043311 169 AAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
..|+ +++|...|+....
T Consensus 111 ~~~~-----~~~A~~~~~~al~ 127 (148)
T 2dba_A 111 KLGR-----LDQAVLDLQRCVS 127 (148)
T ss_dssp HHTC-----HHHHHHHHHHHHH
T ss_pred HcCC-----HHHHHHHHHHHHH
Confidence 6333 7777777766654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0012 Score=52.39 Aligned_cols=121 Identities=13% Similarity=-0.017 Sum_probs=53.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC--HHHHHHHHH
Q 043311 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN--AGTYTAVFE 205 (257)
Q Consensus 128 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~ 205 (257)
....+...|++++|.++|+.+...+ |+....-.+-..+.+ .++|++|...|+...... .|. ...+..+=.
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~-----~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGA-----AERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHH-----TTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHH-----cCCHHHHHHHHHHhhccC-CcccHHHHHHHHHH
Confidence 3444555556666665555554432 222222222223444 233555555554332210 000 113333444
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 206 AFVRAQKVDEARGLLQQMKAKGFVPD--EKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 206 ~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
++...|++++|+..|++.......|. .......-.++.+.|..++|..+|+
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~ 232 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLE 232 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555666666666655553322232 2233334444555555555555553
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0038 Score=44.75 Aligned_cols=86 Identities=9% Similarity=-0.052 Sum_probs=38.3
Q ss_pred cccCCCCHHHHHHHHHHHHhCCC-CCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043311 64 VDEEPTDPRNLQEIFHKMRTEGL-TNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEA 141 (257)
Q Consensus 64 ~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 141 (257)
.+...|++++|.+.|+...+..- .+... .+-.+|.+.|++++|...|+...+.. +-+...|..+-.+|...|++++|
T Consensus 20 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A 98 (164)
T 3sz7_A 20 AAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFDMADYKGA 98 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHH
Confidence 33444555555555554444221 11111 23444445555555555555444431 11244444455555555555555
Q ss_pred HHHHHHHHH
Q 043311 142 LRVFMRMLA 150 (257)
Q Consensus 142 ~~~~~~m~~ 150 (257)
...|++..+
T Consensus 99 ~~~~~~al~ 107 (164)
T 3sz7_A 99 KEAYEKGIE 107 (164)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0025 Score=50.45 Aligned_cols=133 Identities=11% Similarity=0.023 Sum_probs=93.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhc
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN--AYTYAVLIKGLAAA 170 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~t~~~ll~~~~~~ 170 (257)
+...+...|++++|.++|+.+...+ |+......+-..+.+.+++++|+..|+...+.. .|. ...+..+=.++..
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~- 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN- 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH-
Confidence 4567888999999999999887643 544355555568899999999999997544321 111 2355666667777
Q ss_pred cCCcchhHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043311 171 ADGNAKILGDAQKYLMEMVGKGMRPN--AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235 (257)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 235 (257)
.|++++|...|++.......|. .......-.++.+.|+.++|..+|+++... .|+....
T Consensus 184 ----LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~ 244 (282)
T 4f3v_A 184 ----LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVA 244 (282)
T ss_dssp ----TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred ----CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHH
Confidence 4449999999998875433254 234555666778899999999999999885 4663333
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0036 Score=44.36 Aligned_cols=91 Identities=12% Similarity=0.000 Sum_probs=72.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
+-..+.+.|++++|...|+...+.. +.+...|..+=.+|...|++++|...|++..+.+ +-+...|..+-..+...|+
T Consensus 27 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 104 (148)
T 2vgx_A 27 LAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQXGE 104 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 5667788999999999999887642 2367788888888999999999999999988753 3356778888888888444
Q ss_pred CcchhHHHHHHHHHHHHh
Q 043311 173 GNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~ 190 (257)
+++|...|+...+
T Consensus 105 -----~~~A~~~~~~al~ 117 (148)
T 2vgx_A 105 -----LAEAESGLFLAQE 117 (148)
T ss_dssp -----HHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHH
Confidence 9999999988765
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00062 Score=47.99 Aligned_cols=131 Identities=12% Similarity=-0.023 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh----CC
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGV-APN----AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG----KG 192 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~----~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g 192 (257)
..++..+-..|...|++++|...+++..+... ..+ ..++..+-..+...|+ +++|...++.... .+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~a~~~~~~~~ 83 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE-----FETASEYYKKTLLLARQLK 83 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHhC
Confidence 34677778888999999999999988775311 112 1467777777888444 9999999888653 21
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 193 MRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAK----GFVP-DEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 193 ~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
-.+ ....+..+-..+...|++++|.+.+++..+. +-.+ ....+..+-..+...|+.+.|...+++
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 111 1346777888899999999999999988753 2111 234566777788999999999888753
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00064 Score=46.01 Aligned_cols=84 Identities=17% Similarity=0.113 Sum_probs=36.4
Q ss_pred CChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 043311 136 GQGKEALRVFMRMLASGV--APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213 (257)
Q Consensus 136 ~~~~~a~~~~~~m~~~g~--~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 213 (257)
|++++|...|++..+.+. +-+...|..+-..+...| ++++|...|+...+.. +-+...+..+-.++...|++
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~-----~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 77 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLG-----EYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRY 77 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCH
Confidence 444555555555444321 112334444444444422 2555555555544321 11234444445555555555
Q ss_pred HHHHHHHHHHHH
Q 043311 214 DEARGLLQQMKA 225 (257)
Q Consensus 214 ~~a~~~~~~m~~ 225 (257)
++|...+++...
T Consensus 78 ~~A~~~~~~al~ 89 (117)
T 3k9i_A 78 EQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0067 Score=41.28 Aligned_cols=91 Identities=13% Similarity=-0.082 Sum_probs=58.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
+-..+.+.|++++|...|+...+.. +-+...|..+=.++...|++++|...|++..+.. +-+...+..+-..+..
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~--- 97 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN--- 97 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH---
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH---
Confidence 4456667777777777777766531 1245666666667777777777777777766542 2245666666666666
Q ss_pred CcchhHHHHHHHHHHHHh
Q 043311 173 GNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~ 190 (257)
.|++++|...|+...+
T Consensus 98 --~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 --EHNANAALASLRAWLL 113 (121)
T ss_dssp --HHHHHHHHHHHHHHHC
T ss_pred --cCCHHHHHHHHHHHHH
Confidence 4447777777776654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0041 Score=49.22 Aligned_cols=178 Identities=9% Similarity=-0.004 Sum_probs=105.7
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+...|++++|...|....+..- .+... .+-.+|.+.|++++|...|+...+.. +-+...|..+-.+|...|++++
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~ 90 (281)
T 2c2l_A 12 NRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYDE 90 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 456678999999999998887432 22222 46777888999999999999887742 2356788888888999999999
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043311 141 ALRVFMRMLASGVAPNA-YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~-~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 219 (257)
|...|++..+.+ |+. ..+...+....+ ...... +..........+......+ ..+ ..|+.++|.+.
T Consensus 91 A~~~~~~al~l~--p~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~~ 157 (281)
T 2c2l_A 91 AIANLQRAYSLA--KEQRLNFGDDIPSALR--------IAKKKR-WNSIEERRIHQESELHSYL-TRL-IAAERERELEE 157 (281)
T ss_dssp HHHHHHHHHHHH--HHTTCCCCSHHHHHHH--------HHHHHH-HHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHHHTT
T ss_pred HHHHHHHHHHhC--ccchhhHHHHHHHHHH--------HHHHHH-HHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHHHHH
Confidence 999998876532 211 111112222222 111111 2223333334444443333 333 35778888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHH-hhcC-CchhhHHhhhc
Q 043311 220 LQQMKAKGFVPDEKAVKEALID-KRGQ-GFRGVINILFG 256 (257)
Q Consensus 220 ~~~m~~~g~~p~~~t~~~ll~~-~~~~-g~~~~~~~l~~ 256 (257)
+++..+. .|+......-+.. +... +..+.+..+|.
T Consensus 158 ~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~ 194 (281)
T 2c2l_A 158 CQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFS 194 (281)
T ss_dssp TSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7776543 5665444444443 2222 45666777664
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0038 Score=42.91 Aligned_cols=97 Identities=11% Similarity=-0.069 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 043311 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233 (257)
Q Consensus 154 ~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 233 (257)
..+...|..+-..+...|+ ++.|...|+...... +.+...|..+-..+...|++++|...+++..+.. +-+..
T Consensus 6 ~~~~~~~~~~g~~~~~~~~-----~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 78 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRK-----YPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVK 78 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred cccHHHHHHHHHHHHHhCc-----HHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHH
Confidence 3467888888888988555 999999999887642 2356788889999999999999999999998864 33677
Q ss_pred HHHHHHHHhhcCCchhhHHhhhcC
Q 043311 234 AVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 234 t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.+..+-..+...|+.+.|...|++
T Consensus 79 ~~~~l~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 79 AHFFLGQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 888888999999999999988753
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0018 Score=55.53 Aligned_cols=117 Identities=15% Similarity=0.051 Sum_probs=73.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCc
Q 043311 96 ALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~ 174 (257)
.+.+.|++++|.+.|++..+. .| +...|..+-.+|.+.|++++|...|++..+.. +-+...|..+-.+|...
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~---- 87 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL---- 87 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHH----
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc----
Confidence 345677888888888777664 23 46677777777888888888888887777653 33566777777777773
Q ss_pred chhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 043311 175 AKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEA--FVRAQKVDEARGLLQQ 222 (257)
Q Consensus 175 ~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~--~~~~~~~~~a~~~~~~ 222 (257)
|++++|.+.|++..+. .| +...+..+-.+ +.+.|++++|.+++++
T Consensus 88 -g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 88 -GKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp -TCHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred -CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3478888877776653 22 22333333333 6666777777777664
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.014 Score=39.40 Aligned_cols=88 Identities=19% Similarity=0.068 Sum_probs=42.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHH
Q 043311 95 DALSKDGLTHEALQLFAQIKDKGHMPDV----VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN---AYTYAVLIKGL 167 (257)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~t~~~ll~~~ 167 (257)
..+.+.|++++|...|+...+.. |+. ..+..+-.++.+.|++++|...|++..+.. +-+ ...+..+-..+
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 34455556666666655555431 221 244444555555555556555555555432 111 33444444445
Q ss_pred HhccCCcchhHHHHHHHHHHHHh
Q 043311 168 AAAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 168 ~~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
...|+ +++|...|+....
T Consensus 87 ~~~g~-----~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGK-----NTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTC-----HHHHHHHHHHHHH
T ss_pred HHcCC-----HHHHHHHHHHHHH
Confidence 55222 5555555555543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0013 Score=56.50 Aligned_cols=119 Identities=9% Similarity=-0.097 Sum_probs=84.8
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+.+.|++++|.+.|++..+..-. +.. ..+-.+|.+.|++++|.+.|++..+.. +-+...|..+-.+|...|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 6778899999999999999885322 111 247788899999999999999998862 2356789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH--HHhccCCcchhHHHHHHHHHHH
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIKG--LAAAADGNAKILGDAQKYLMEM 188 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~~--~~~~~~~~~~~~~~a~~~~~~m 188 (257)
|...|++..+.. +-+...+..+-.+ +.+ .|++++|.+++++-
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~-----~g~~~~A~~~~~~~ 136 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVK-----QKAFERAIAGDEHK 136 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHH-----HHHHCCC------C
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH-----HHHHHHHhcccccc
Confidence 999999988753 1123344444333 666 45588888887753
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0021 Score=55.25 Aligned_cols=126 Identities=12% Similarity=0.033 Sum_probs=93.5
Q ss_pred HHHhcCChHHHHHHHHHHHhC---CC---CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCC-CHHHHH
Q 043311 96 ALSKDGLTHEALQLFAQIKDK---GH---MPD-VVAHTAVIEAYASAGQGKEALRVFMRMLAS-----G-VAP-NAYTYA 161 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~---g~---~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~~-~~~t~~ 161 (257)
.+...|++++|..++++..+. -+ .|+ ..+++.|..+|...|++++|..++++...- | -.| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999999877543 11 243 368999999999999999999999886632 3 223 347889
Q ss_pred HHHHHHHhccCCcchhHHHHHHHHHHHHh-----CCC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 162 VLIKGLAAAADGNAKILGDAQKYLMEMVG-----KGM-RPNA-GTYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 162 ~ll~~~~~~~~~~~~~~~~a~~~~~~m~~-----~g~-~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
.|-..|.. .|++++|..++++..+ .|- .|++ .+.+.+-.++...+.+++|+.+|.++++.
T Consensus 398 nLa~~~~~-----~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWH-----AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 5559999998887652 232 1222 34566667788889999999999999863
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0046 Score=52.62 Aligned_cols=125 Identities=13% Similarity=0.065 Sum_probs=96.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPD--------------VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 158 (257)
+-..|.+.|++++|...|+...+..-... ...|..+-.+|.+.|++++|...|++..+.. +-+..
T Consensus 274 ~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 352 (457)
T 1kt0_A 274 KGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEK 352 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHH
Confidence 55678899999999999998877421111 5789999999999999999999999998764 44788
Q ss_pred HHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Q 043311 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARG-LLQQMKA 225 (257)
Q Consensus 159 t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~-~~~~m~~ 225 (257)
.|..+-.+|...++ +++|...|+...+. .| +...+..+-..+.+.++.+++.+ +++.|..
T Consensus 353 a~~~~g~a~~~~g~-----~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 353 GLYRRGEAQLLMNE-----FESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHTTC-----HHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHccC-----HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999555 99999999998864 44 44577888888888888887764 4555543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0052 Score=41.82 Aligned_cols=95 Identities=13% Similarity=-0.043 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTA 202 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ 202 (257)
.+..+-..+.+.|++++|...|++..+.. +-+...|..+-..+...| ++++|...|+...+. .| +...+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g-----~~~~A~~~~~~al~l--~P~~~~~~~~ 90 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENE-----KDGLAIIALNHARML--DPKDIAVHAA 90 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 45556677889999999999999998763 347788888888888844 499999999988764 34 5667888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 203 VFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
+-..+...|++++|...+++..+.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 889999999999999999998753
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.012 Score=39.88 Aligned_cols=97 Identities=20% Similarity=0.162 Sum_probs=74.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC----HHH
Q 043311 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNA---YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN----AGT 199 (257)
Q Consensus 127 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~ 199 (257)
.+-..+...|++++|...|++..+..- .+. ..+..+-..+...|+ +++|...|+...+. .|+ ...
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~-----~~~A~~~~~~~~~~--~p~~~~~~~~ 78 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRN-----FQLAEAQFRDLVSR--YPTHDKAAGG 78 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHH--CTTSTTHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHH--CCCCcccHHH
Confidence 345567889999999999999887531 122 467777778888444 99999999998764 243 456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 043311 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233 (257)
Q Consensus 200 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 233 (257)
+..+-..+...|++++|...|++..... |+..
T Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~ 110 (129)
T 2xev_A 79 LLKLGLSQYGEGKNTEAQQTLQQVATQY--PGSD 110 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTSH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCh
Confidence 7778889999999999999999998753 5543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.015 Score=45.95 Aligned_cols=90 Identities=17% Similarity=0.032 Sum_probs=75.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~ 171 (257)
+-..+.+.|++++|...|+...+. .| +...|..+-.+|.+.|++++|...+++..+.. +-+...|..+-.++...|
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g 86 (281)
T 2c2l_A 10 QGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEME 86 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 556788999999999999988875 34 67888889999999999999999999988753 346788888888898854
Q ss_pred CCcchhHHHHHHHHHHHHh
Q 043311 172 DGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~ 190 (257)
+ +++|...|+...+
T Consensus 87 ~-----~~~A~~~~~~al~ 100 (281)
T 2c2l_A 87 S-----YDEAIANLQRAYS 100 (281)
T ss_dssp C-----HHHHHHHHHHHHH
T ss_pred C-----HHHHHHHHHHHHH
Confidence 4 9999999988764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00095 Score=45.12 Aligned_cols=82 Identities=10% Similarity=0.069 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHhCCCC-CcHH----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 043311 68 PTDPRNLQEIFHKMRTEGLT-NNAV----KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEAL 142 (257)
Q Consensus 68 ~~~~~~a~~~~~~m~~~~~~-p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 142 (257)
.|++++|...|++..+.+.. |+.. .+-.+|.+.|++++|...|+...+.. +-+...+..+-.++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 45566666666666554311 2211 24445555666666666666555432 113445555555566666666666
Q ss_pred HHHHHHHH
Q 043311 143 RVFMRMLA 150 (257)
Q Consensus 143 ~~~~~m~~ 150 (257)
..|++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0074 Score=41.43 Aligned_cols=101 Identities=9% Similarity=0.038 Sum_probs=73.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCC----HHHHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG--VAPN----AYTYAVLIKG 166 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~----~~t~~~ll~~ 166 (257)
+=..+.+.|++++|++.|+...+.. +-+...|+.+=.+|.+.|++++|...|++..+.+ ..++ ..+|..+-..
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~ 92 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNA 92 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 5678899999999999999987742 2356788889999999999999999999877532 1222 1355555566
Q ss_pred HHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHH
Q 043311 167 LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201 (257)
Q Consensus 167 ~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 201 (257)
+... |.++.|.+.|+..... .||..+..
T Consensus 93 ~~~~-----~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 93 FQKQ-----NDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHT-----TCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHc-----CCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 6664 4499999999987652 46655443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.012 Score=50.01 Aligned_cols=124 Identities=10% Similarity=0.030 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhccCCcchhHHHHHHHHHH
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN--------------AYTYAVLIKGLAAAADGNAKILGDAQKYLME 187 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--------------~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~ 187 (257)
...|..+=..|.+.|++++|...|++..+..-... ...|..+-.+|.+.++ ++.|...++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~-----~~~A~~~~~~ 342 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE-----YTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC-----HHHHHHHHHH
Confidence 45677788889999999999999999886421111 5888889899999555 9999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCchhhHHh
Q 043311 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP-DEKAVKEALIDKRGQGFRGVINI 253 (257)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~~~~ 253 (257)
..+.. +-+...|..+-.+|...|++++|...|++..+. .| +...+..+-..+...|+.+.+++
T Consensus 343 al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 343 ALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 87642 235678888899999999999999999999875 34 44566666667777777666553
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.015 Score=47.96 Aligned_cols=125 Identities=10% Similarity=-0.006 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHH
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLAS---------------GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~ 187 (257)
..|..+=..+.+.|++++|...|++..+. --+.+..+|..+-..|.+.++ +++|.+.++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~-----~~~A~~~~~~ 298 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD-----WQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccC-----HHHHHHHHHH
Confidence 34666667788888888888888877651 112245777888888888444 9999999988
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhh
Q 043311 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINIL 254 (257)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l 254 (257)
..+.. +-+...|..+-.+|...|++++|.+.|++..+.. +-+...+..+-..+...+..+.+++.
T Consensus 299 al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 299 ALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87642 2256678888888999999999999999988753 22556666666667777776666543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.039 Score=38.39 Aligned_cols=113 Identities=10% Similarity=-0.013 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHH
Q 043311 70 DPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS----AGQGKEALRVF 145 (257)
Q Consensus 70 ~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~ 145 (257)
++++|.+.|+...+.| .+... |-..|...+.++.|.+.|+...+.| +...+..|=..|.. .++.++|+.+|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~-lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC-LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH-HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh-HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 4566666666666655 22322 4444444455566666666665543 44555555555555 55666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC
Q 043311 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191 (257)
Q Consensus 146 ~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~ 191 (257)
++-.+.| +...+..+-..|.. |.+-.++.++|.++|+.-.+.
T Consensus 85 ~~Aa~~g---~~~a~~~Lg~~y~~-G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 85 SKACGLN---DQDGCLILGYKQYA-GKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHH-TSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHcCC---CHHHHHHHHHHHHC-CCCCCcCHHHHHHHHHHHHHC
Confidence 6655544 33344444443333 111122255555555554443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.018 Score=40.93 Aligned_cols=62 Identities=23% Similarity=0.188 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 158 ~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
..|..+-.++.+.|+ ++.|...++...... +-+...|..+-.+|...|++++|...|++...
T Consensus 64 ~~~~nla~~~~~~~~-----~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGD-----LHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCc-----HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 344444444444222 555555555444321 11334444455555555555555555555444
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0071 Score=39.70 Aligned_cols=91 Identities=11% Similarity=0.001 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----
Q 043311 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD----- 231 (257)
Q Consensus 157 ~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----- 231 (257)
...|..+-..+... |++++|.+.|+...+.. +.+...|..+-.++.+.|++++|...+++..+. .|+
T Consensus 4 ~~~~~~~g~~~~~~-----~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 75 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQ-----GLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVA 75 (111)
T ss_dssp HHHHHHHHHHHHTT-----TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHH
T ss_pred HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHH
Confidence 33444444555552 33666666666554421 123455555556666666666666666666543 233
Q ss_pred --HHHHHHHHHHhhcCCchhhHHhhh
Q 043311 232 --EKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 232 --~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
...+..+-.++...|..+.+...|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 76 IRSKLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHHHHHhHhhhHhHH
Confidence 333444444444455444444333
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.014 Score=48.28 Aligned_cols=118 Identities=8% Similarity=0.057 Sum_probs=90.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC--------------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDK--------------GHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~--------------g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 157 (257)
+-..+.+.|++++|.+.|+...+. ...| +...|..+-.+|.+.|++++|...+++..+.. +-+.
T Consensus 229 ~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~ 307 (370)
T 1ihg_A 229 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNT 307 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhH
Confidence 556788999999999999887751 0122 45788889999999999999999999998763 3467
Q ss_pred HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 043311 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARG 218 (257)
Q Consensus 158 ~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~ 218 (257)
..|..+-.+|...++ +++|.+.|+...+. .| +...+..+-..+.+.++.+++.+
T Consensus 308 ~a~~~lg~~~~~~g~-----~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 308 KALYRRAQGWQGLKE-----YDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHTTC-----HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccC-----HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999555 99999999988764 34 45566666666666666666554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.047 Score=38.71 Aligned_cols=98 Identities=17% Similarity=0.131 Sum_probs=71.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC-------CC---------CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDK-------GH---------MP-DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~-------g~---------~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 155 (257)
.-..+.+.|++++|...|....+. .- .| +...|..+-.+|.+.|++++|...++...+.+ +.
T Consensus 17 ~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~ 95 (162)
T 3rkv_A 17 KGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ET 95 (162)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-Cc
Confidence 445677888888888888776653 00 11 23578888888889999999999998888753 44
Q ss_pred CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHH
Q 043311 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG 198 (257)
Q Consensus 156 ~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 198 (257)
+...|..+-.++...|+ +++|...|+..... .|+..
T Consensus 96 ~~~a~~~~g~~~~~~g~-----~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 96 NEKALFRRAKARIAAWK-----LDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp CHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHH--CGGGH
T ss_pred chHHHHHHHHHHHHHhc-----HHHHHHHHHHHHhc--CCCCH
Confidence 67788888888888544 99999988887753 45543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0053 Score=50.01 Aligned_cols=124 Identities=13% Similarity=0.048 Sum_probs=68.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHH------------------HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVV------------------AHTAVIEAYASAGQGKEALRVFMRMLASGVA 154 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------------------~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 154 (257)
+-..+.+.|++++|...|+...+. .|+.. .|..+-.+|.+.|++++|...|++..+.. +
T Consensus 185 ~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 261 (338)
T 2if4_A 185 DGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE-E 261 (338)
T ss_dssp HHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-T
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 445667788899999988887653 24433 77888888889999999999998887653 3
Q ss_pred CCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH-HHHcCCHHHHHHHHHHHHHC
Q 043311 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA-GTYTAVFEA-FVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 155 ~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~-~~~~~~~~~a~~~~~~m~~~ 226 (257)
-+...|..+-.+|...|+ +++|...|+...+. .|+. ..+..+-.. ....+..+.+..+|.+|...
T Consensus 262 ~~~~a~~~lg~a~~~~g~-----~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 262 KNPKALFRRGKAKAELGQ-----MDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp TCHHHHHHHHHHHHTTTC-----HHHHHHHHHHTTC--------------------------------------
T ss_pred CCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 467888888888888444 99999988887643 3433 334444333 23345667777788877643
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=96.69 E-value=0.025 Score=48.63 Aligned_cols=120 Identities=9% Similarity=0.057 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHH
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYA--VLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~--~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 200 (257)
..|-..+..+.+.++++.|..+|+.. +.. ..+...|. +.+..... +..+.|..+|+...+. .+-+...+
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~------~d~~~ar~ife~al~~-~~~~~~~~ 357 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYAT------GSRATPYNIFSSGLLK-HPDSTLLK 357 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHH------CCSHHHHHHHHHHHHH-CTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHC------CChHHHHHHHHHHHHH-CCCCHHHH
Confidence 34555666666667788888888777 221 12333443 22222211 1267788888776653 11123445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
...++-..+.|+.+.|..+|++.. -....|...+.--...|+.+.+..+++
T Consensus 358 ~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 358 EEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVD 408 (493)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 556666667788888888888852 245566666665566677777766554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.082 Score=36.69 Aligned_cols=116 Identities=9% Similarity=-0.038 Sum_probs=87.7
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHH
Q 043311 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGD 180 (257)
Q Consensus 101 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~ 180 (257)
++.++|.+.|+...+.| .|+. . |=..|...+.+++|+.+|++-.+.| +...+..+-..|.. |.+..++.++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~-G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYEN-GKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH-CSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHc-CCCCCccHHH
Confidence 45788999999998887 2333 2 5555666678889999999998876 56666666666655 2222345999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCC
Q 043311 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVR----AQKVDEARGLLQQMKAKGF 228 (257)
Q Consensus 181 a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~ 228 (257)
|.++|+.-.+.| +...+..|-..|.. .++.++|.+.|++..+.|.
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999988765 56777778888888 7899999999999998874
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.038 Score=47.43 Aligned_cols=121 Identities=11% Similarity=0.028 Sum_probs=87.3
Q ss_pred ccCCCCHHHHHHHHHHHHhC---CCCCc---HH----HHHHHHHhcCChHHHHHHHHHHHhC-----C-CCCCH-HHHHH
Q 043311 65 DEEPTDPRNLQEIFHKMRTE---GLTNN---AV----KMFDALSKDGLTHEALQLFAQIKDK-----G-HMPDV-VAHTA 127 (257)
Q Consensus 65 ~~~~~~~~~a~~~~~~m~~~---~~~p~---~~----~ll~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~~-~~~~~ 127 (257)
+...|++++|..++++..+. -+.|+ .. .|..+|...|++++|..++++..+- | -.|++ .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45789999999999888762 22232 22 3778889999999999999887532 2 23544 57999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH-----CCC-CCCH-HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh
Q 043311 128 VIEAYASAGQGKEALRVFMRMLA-----SGV-APNA-YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 128 li~~~~~~~~~~~a~~~~~~m~~-----~g~-~~~~-~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
|=..|...|++++|..++++-.+ .|- .|++ .+.+.+-..+.. .+.++.|+.+|..+.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e-----~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME-----LRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 99999999999999999987653 232 2333 444555555555 6668999999998875
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.043 Score=36.35 Aligned_cols=77 Identities=16% Similarity=0.123 Sum_probs=39.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHH
Q 043311 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185 (257)
Q Consensus 106 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~ 185 (257)
+.+.|+...+.. +-+...|..+-..|...|++++|...|++..+.. +.+...|..+-..+...|+ +++|...|
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~-----~~~A~~~~ 76 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGD-----RAGARQAW 76 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-----HHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCC-----HHHHHHHH
Confidence 444455444421 1234555555555666666666666666555432 2234455555555555332 55555555
Q ss_pred HHHH
Q 043311 186 MEMV 189 (257)
Q Consensus 186 ~~m~ 189 (257)
+...
T Consensus 77 ~~al 80 (115)
T 2kat_A 77 ESGL 80 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.013 Score=47.71 Aligned_cols=125 Identities=12% Similarity=0.084 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH------------------HHHHHHHHHHhccCCcchhHHHHHH
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY------------------TYAVLIKGLAAAADGNAKILGDAQK 183 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~------------------t~~~ll~~~~~~~~~~~~~~~~a~~ 183 (257)
...|..+-..+.+.|++++|...|++..+. .|+.. .|..+-..+.+.++ +++|..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~-----~~~A~~ 251 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR-----YDEAIG 251 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC-----CHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHH
Confidence 344666677788899999999999997764 34433 77788888888444 999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh--hcCCchhhHHhhhc
Q 043311 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK--RGQGFRGVINILFG 256 (257)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~g~~~~~~~l~~ 256 (257)
.++...+.. +-+...|..+-.+|...|++++|...|++..+. .|+.......+..+ ...+..+.+..+|.
T Consensus 252 ~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 252 HCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887642 236678888999999999999999999998653 45433333333322 23344555555543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.029 Score=36.57 Aligned_cols=54 Identities=22% Similarity=0.253 Sum_probs=23.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043311 96 ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 150 (257)
.+.+.|++++|.+.|+...+.. +.+...|..+-.+|.+.|++++|...|++..+
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 13 SLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3444444444444444443321 11333444444444444444444444444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.092 Score=32.65 Aligned_cols=73 Identities=21% Similarity=0.188 Sum_probs=46.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~ 167 (257)
+-..+.+.|++++|...|+...+.. +.+...|..+-.++.+.|++++|...|++..+.. +-+...+..+-..+
T Consensus 15 la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 15 LGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 4456677778888888777776542 2245667777777777888888888887776542 22444444444433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.22 Score=35.70 Aligned_cols=107 Identities=20% Similarity=0.124 Sum_probs=70.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCC-C-----CH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHM-P-----DV-----VAHTAVIEAYASAGQGKEALRVFMRMLAS-----GVAPN 156 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~-p-----~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~~~~ 156 (257)
.-..+.+.|++++|.+.|+...+.... | +. ..|+.+=.++.+.|++++|+..|++-.+. -+.|+
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 445677889999999999988764211 0 22 28888888999999999999999888763 11443
Q ss_pred -HHHH----HHHHHHHHhccCCcchhHHHHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 043311 157 -AYTY----AVLIKGLAAAADGNAKILGDAQKYLMEMVG-----KGMRPNAGTYTAVF 204 (257)
Q Consensus 157 -~~t~----~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~~li 204 (257)
...| ...-.++.. .|++++|...|+...+ .|+.+......-.+
T Consensus 97 ~~~A~~~~~~~rG~aL~~-----lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDG-----LGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp HHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHH-----CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 3455 555556666 3447888877776652 45555544443333
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.15 Score=33.63 Aligned_cols=77 Identities=16% Similarity=0.073 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043311 73 NLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150 (257)
Q Consensus 73 ~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 150 (257)
.+...|+...+..-. +.. ..+-..|.+.|++++|...|+...+.. +.+...|..+-.+|...|++++|...|++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666553211 111 135566777788888888877776642 22456677777777778888888877777654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.098 Score=44.07 Aligned_cols=93 Identities=12% Similarity=0.019 Sum_probs=70.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC--C-CCC----CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh-----CC-CC
Q 043311 128 VIEAYASAGQGKEALRVFMRMLAS--G-VAP----NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG-----KG-MR 194 (257)
Q Consensus 128 li~~~~~~~~~~~a~~~~~~m~~~--g-~~~----~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~-----~g-~~ 194 (257)
.+.-+.+.|++++|..++++..+. . +.| ...+++.+...|.. .|++++|..++++... .| ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~-----~g~~~eA~~~~~~~L~i~~~~lg~~H 367 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN-----LGLLEEALFYGTRTMEPYRIFFPGSH 367 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHHHhHHHHcCCCC
Confidence 355577789999999999988753 1 222 34788899999998 4559999999887663 22 23
Q ss_pred CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 195 PNA-GTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 195 p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
|++ .+++.|-..|...|++++|+.++++..+
T Consensus 368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 333 4689999999999999999999998864
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.16 Score=31.50 Aligned_cols=62 Identities=21% Similarity=0.233 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
..|..+-..+...|++++|...|++..+.. +.+...|..+-..+...|+ +++|...|++..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGD-----YDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHh
Confidence 445555555666666666666666655432 2244555555555555333 6666666655543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.32 Score=34.82 Aligned_cols=112 Identities=16% Similarity=0.104 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC------CH-----HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC-
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAP------NA-----YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK- 191 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~------~~-----~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~- 191 (257)
.+...=..+.+.|++++|...|++-.+..-.. +. ..|..+-.++.+.|+ +++|...++...+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr-----~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS-----FDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHhh
Confidence 34555566888999999999999988642110 22 388888888888554 99999998887752
Q ss_pred ----CCCCCH-HHH----HHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHH
Q 043311 192 ----GMRPNA-GTY----TAVFEAFVRAQKVDEARGLLQQMKA-----KGFVPDEKAVKEALI 240 (257)
Q Consensus 192 ----g~~p~~-~~~----~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~t~~~ll~ 240 (257)
.+.|+. ..| ...=.++...|++++|+..|++..+ .|+.+........+.
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 226654 456 7777888999999999999999864 477777666655554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.062 Score=34.80 Aligned_cols=64 Identities=19% Similarity=0.197 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 156 ~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
+...|..+-..+...|+ +++|...|+...+.. +-+...|..+-.+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~-----~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDN-----ASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444455555555222 555555555554321 11234455555555555555555555555543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.12 Score=43.65 Aligned_cols=86 Identities=9% Similarity=-0.026 Sum_probs=65.8
Q ss_pred cCChHHHHHHHHHHHHC--C-CCC----CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh-----CC-CCCCH-HHH
Q 043311 135 AGQGKEALRVFMRMLAS--G-VAP----NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG-----KG-MRPNA-GTY 200 (257)
Q Consensus 135 ~~~~~~a~~~~~~m~~~--g-~~~----~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~-----~g-~~p~~-~~~ 200 (257)
.|++++|..++++..+. . +.| ...+++.+..+|.. .|++++|..++++..+ .| -.|++ .+|
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~-----~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY-----MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh-----hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 46889999999886642 1 222 24789999999999 4559999999988763 22 23433 469
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 201 TAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
+.|-..|...|++++|+.++++..+
T Consensus 386 ~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 386 LKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHH
Confidence 9999999999999999999998864
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.078 Score=44.67 Aligned_cols=92 Identities=15% Similarity=0.035 Sum_probs=70.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC---CC---CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCC-CHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKG---HM---PD-VVAHTAVIEAYASAGQGKEALRVFMRMLAS-----G-VAP-NAY 158 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g---~~---p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~~-~~~ 158 (257)
.+..+.+.|++++|.++++...+.. +. |+ ..+++.+..+|...|++++|..++++...- | -.| ...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 4556778899999999999887531 22 22 468999999999999999999999887632 2 223 347
Q ss_pred HHHHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 043311 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 159 t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
+|+.|-..|.. .|++++|..++++..
T Consensus 373 ~l~nLa~~~~~-----~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLH-----QGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHH-----TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-----cCCHHHHHHHHHHHH
Confidence 88899999999 555999999888765
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.17 Score=45.74 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=9.8
Q ss_pred HHHHHHhcCChHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLF 110 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~ 110 (257)
++..+.+.|.++.|.++.
T Consensus 635 ~~~~l~~~~~~~~a~~~~ 652 (814)
T 3mkq_A 635 IARFLEGQEYYEEALNIS 652 (814)
T ss_dssp HHHHHHHTTCHHHHHHHC
T ss_pred HHHHHHhCCChHHheecC
Confidence 455555566655555443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=95.31 E-value=0.15 Score=32.93 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=25.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 149 (257)
+-.+|.+.|++++|...|+...+.. +-+...|..+-.+|...|++++|...|++..
T Consensus 13 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 13 LAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444555555555555444431 1123344444455555555555555554433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.28 E-value=0.56 Score=42.29 Aligned_cols=136 Identities=15% Similarity=0.037 Sum_probs=78.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
-.......|+++.|.++.+.+ .+...|..+=..+.+.++++.|.+.|.++.. |..+...+...++
T Consensus 658 ~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~ 722 (814)
T 3mkq_A 658 KFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNN 722 (814)
T ss_dssp HHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTC
T ss_pred heehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCC
Confidence 355667889999999986543 3678999999999999999999999998863 3334444444333
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHH
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRPN-------AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE----KAVKEALID 241 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~ 241 (257)
.+...++-+.....|-.-. ..-+...++.|.+.+++++|..+-+. ..|.. ......-..
T Consensus 723 -----~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~-----~~~~~~~i~~~~~~~~~~ 792 (814)
T 3mkq_A 723 -----KEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGST-----YGLGDNEVNDIVTKWKEN 792 (814)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHH-----TTCCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHH-----hCCChHHHHHHHHHHHHH
Confidence 3433333333333221000 00123344445555555555554443 34555 344444445
Q ss_pred hhcCCchhhHHh
Q 043311 242 KRGQGFRGVINI 253 (257)
Q Consensus 242 ~~~~g~~~~~~~ 253 (257)
+...|+...++.
T Consensus 793 L~~~~~~~~a~~ 804 (814)
T 3mkq_A 793 LILNGKNTVSER 804 (814)
T ss_dssp HHTTTCHHHHTT
T ss_pred HHhccchhHHHh
Confidence 566676544443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.18 Score=42.51 Aligned_cols=86 Identities=12% Similarity=0.006 Sum_probs=65.9
Q ss_pred hcCChHHHHHHHHHHHhC---CC---CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCC-HHHHHHHH
Q 043311 99 KDGLTHEALQLFAQIKDK---GH---MPDV-VAHTAVIEAYASAGQGKEALRVFMRMLAS-----G-VAPN-AYTYAVLI 164 (257)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~---g~---~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~~~-~~t~~~ll 164 (257)
..|++++|..++++..+. -+ .|++ .+++.|-.+|...|++++|..++++...- | -.|+ ..+|+.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357889999999877542 12 2333 68999999999999999999999887642 3 2333 47899999
Q ss_pred HHHHhccCCcchhHHHHHHHHHHHH
Q 043311 165 KGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 165 ~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
..|.. .|++++|..++++..
T Consensus 390 ~~~~~-----qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMG-----LENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHH-----TTCHHHHHHHHHHHH
T ss_pred HHHHh-----ccCHHHHHHHHHHHH
Confidence 99999 555999999988765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=1.2 Score=38.92 Aligned_cols=173 Identities=9% Similarity=-0.042 Sum_probs=117.4
Q ss_pred CHHHHHHHHHHHHhCCCCCc-HH----HHHHHHHhcCC-------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 043311 70 DPRNLQEIFHKMRTEGLTNN-AV----KMFDALSKDGL-------THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG- 136 (257)
Q Consensus 70 ~~~~a~~~~~~m~~~~~~p~-~~----~ll~~~~~~~~-------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~- 136 (257)
-.++|.+.++.+....-.-. .. .++..+.+... ++++++.++.+.+.. +-+..+|+---.++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 33567788877777432221 11 13333332111 889999999988752 235678888888888888
Q ss_pred -ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----
Q 043311 137 -QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA----- 210 (257)
Q Consensus 137 -~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----- 210 (257)
+++++++.++++.+.+.+ |...|+.--..+.+.+. .++++.+.++.+.+... -|...|+..-..+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~----~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAV----APAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCC----CHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCC----ChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccc
Confidence 779999999999987644 88899988777777541 38889998888876532 2667787777666663
Q ss_pred ---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhh
Q 043311 211 ---------QKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250 (257)
Q Consensus 211 ---------~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 250 (257)
+.++++.+++++..... +-|...|...-..+...+..+.
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56789999999888743 2255666666555555554333
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=94.83 E-value=1 Score=38.48 Aligned_cols=118 Identities=15% Similarity=0.125 Sum_probs=81.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT--AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~ 171 (257)
+..+.+.+.++.|..+|+.. +.. ..+...|- +.|.... .++.+.|..+|+...+.- .-+...|...++...+.|
T Consensus 293 ~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~ 368 (493)
T 2uy1_A 293 LNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIG 368 (493)
T ss_dssp HHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcC
Confidence 34444567899999999998 321 12333343 3333322 347999999999987652 223445666677667744
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 172 DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
+ .+.|..+|+... -....|...++-=...|+.+.+..+++++..
T Consensus 369 ~-----~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 369 D-----EENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp C-----HHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred C-----HHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4 899999999873 2577888888877788999999999988874
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.53 E-value=0.77 Score=31.97 Aligned_cols=130 Identities=10% Similarity=0.028 Sum_probs=64.7
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhH
Q 043311 99 KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178 (257)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 178 (257)
-.|.+++..++..+.... .+..-||=+|.-...+-+=+-.+++++..-+. .|. ..+|++
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi---------------s~C~Nl 77 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL---------------DKCQNL 77 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG---------------GGCSCT
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc---------------HhhhcH
Confidence 367777777777776654 35566666666666666666666666655431 110 012223
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 179 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
......+-.+ ..+...++..++..+..|.-|+..+++.++.. +.+|++.....+-.||.+-|+...++.+.
T Consensus 78 KrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 78 KSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp HHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 3333333322 12344445555555555555555555554322 23444445555555555555555544443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.42 E-value=0.31 Score=34.83 Aligned_cols=28 Identities=25% Similarity=0.183 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043311 212 KVDEARGLLQQMKAKGFVPDEKAVKEALID 241 (257)
Q Consensus 212 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 241 (257)
++++|.+.|++..+ +.|+...|..-+..
T Consensus 106 ~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 106 NFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 56666666666555 34555555444443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.40 E-value=0.63 Score=32.97 Aligned_cols=82 Identities=13% Similarity=0.067 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-C-HH-HHHHHHHHHHHcCCHHH
Q 043311 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-N-AG-TYTAVFEAFVRAQKVDE 215 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~-~~-~~~~li~~~~~~~~~~~ 215 (257)
..+.+-|.+..+.|. ++..+...+-.++++..+ .+.++++..+|++..+.+ .| + .. .|+ |--+|.+.|++++
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~--~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~-LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKY--NDDIRKGIVLLEELLPKG-SKEEQRDYVFY-LAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHHHHS-CHHHHHHHHHH-HHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcC-CccchHHHHHH-HHHHHHHccCHHH
Confidence 334444444444443 455555555555555443 334556666666655432 12 1 11 232 3334466666666
Q ss_pred HHHHHHHHHH
Q 043311 216 ARGLLQQMKA 225 (257)
Q Consensus 216 a~~~~~~m~~ 225 (257)
|.++++.+.+
T Consensus 90 A~~y~~~lL~ 99 (152)
T 1pc2_A 90 ALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666665
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=1.7 Score=35.37 Aligned_cols=207 Identities=9% Similarity=0.002 Sum_probs=126.4
Q ss_pred hhhcccCCCCCCcccccc---ccccCCC-CHHHHHHHHHHHHhCCCCCcHH-H----HHHHHHhcC-ChHHHHHHHHHHH
Q 043311 45 KYVNTKSKLPPPYDPFKK---VVDEEPT-DPRNLQEIFHKMRTEGLTNNAV-K----MFDALSKDG-LTHEALQLFAQIK 114 (257)
Q Consensus 45 ~~~~~~~~~~p~~~~~~~---~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~-~----ll~~~~~~~-~~~~a~~~~~~m~ 114 (257)
....+.-.+.|+..+.=. ..+...| ++++++.+++.+.......... . ++..+ .+ ++++++++++.+.
T Consensus 75 ~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l--~~~~~~~EL~~~~k~L 152 (349)
T 3q7a_A 75 ELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRI--SPQDPVSEIEYIHGSL 152 (349)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH--CCSCCHHHHHHHHHHT
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh--cCCChHHHHHHHHHHH
Confidence 334444455565444322 4444556 5889999998888754333221 1 33222 14 6788888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC--CcchhHHHHHHH
Q 043311 115 DKGHMPDVVAHTAVIEAYASAGQGK--------EALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD--GNAKILGDAQKY 184 (257)
Q Consensus 115 ~~g~~p~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~--~~~~~~~~a~~~ 184 (257)
+.. .-|-..|+----.+.+.+.++ ++++.++++.+.+.. |...|+-.-..+.+.+. .....++++.+.
T Consensus 153 ~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~ 230 (349)
T 3q7a_A 153 LPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIY 230 (349)
T ss_dssp SSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 642 235667776666666555555 888999998887533 78888887777766543 122346778888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHCC-----CCCCHHHHHHHH
Q 043311 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKV--------------------DEARGLLQQMKAKG-----FVPDEKAVKEAL 239 (257)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~--------------------~~a~~~~~~m~~~g-----~~p~~~t~~~ll 239 (257)
+++..... +-|...|+-+-..+.+.|+- ....+...++...+ -.++...+..+.
T Consensus 231 ~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~ 309 (349)
T 3q7a_A 231 ILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLA 309 (349)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHH
Confidence 77766532 23667787766666665543 33344433333322 136778888888
Q ss_pred HHhhcCCchhhHHhhhc
Q 043311 240 IDKRGQGFRGVINILFG 256 (257)
Q Consensus 240 ~~~~~~g~~~~~~~l~~ 256 (257)
..|...|..++|.++|+
T Consensus 310 d~~~~~~~~~~a~~~~~ 326 (349)
T 3q7a_A 310 DSFIEQNRVDDAAKVFE 326 (349)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHH
Confidence 88998898888887764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.04 E-value=0.4 Score=34.26 Aligned_cols=119 Identities=14% Similarity=0.023 Sum_probs=75.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043311 98 SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ----------GKEALRVFMRMLASGVAPNAYTYAVLIKGL 167 (257)
Q Consensus 98 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~ 167 (257)
.+.+.+++|.+.++...+.. +-+...|+.+=.++...++ +++|...|++-.+.+ +-+...|..+=.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 34455677777777766542 2255666666666666554 458888888887753 22567788888888
Q ss_pred HhccCC------cchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 168 AAAADG------NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 168 ~~~~~~------~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
.+.|.. ..|++++|.+.|+...+ +.|+...|.-.+.. .+++-+++-+....
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~------~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM------TAKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH------HHTHHHHHHHHHHS
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH------HHhCHhccCccccc
Confidence 764310 01469999999998876 46887777655553 34455555554444
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=93.98 E-value=1.1 Score=36.68 Aligned_cols=61 Identities=8% Similarity=-0.184 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 194 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
..+...|.++--.+...|++++|...+++....+ |+...|..+=..+.-.|+.+.|...|+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~ 334 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYL 334 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3455566666555555677777777777776654 565555444555666677666665553
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.82 Score=28.77 Aligned_cols=59 Identities=19% Similarity=0.164 Sum_probs=47.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVV-AHTAVIEAYASAGQGKEALRVFMRMLASG 152 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g 152 (257)
.-..+.+.|++++|.+.|+...+.. +-+.. .|..+-.+|...|++++|...|++..+.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4456788899999999999887752 22456 78888888999999999999999988753
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.84 Score=28.72 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=25.2
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHHhccCCcchhHHHHHHHHHHHHh
Q 043311 131 AYASAGQGKEALRVFMRMLASGVAP-NAY-TYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 131 ~~~~~~~~~~a~~~~~~m~~~g~~~-~~~-t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
.+.+.|++++|...|++..+. .| +.. .|..+-..+...| ++++|.+.|+...+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~-----~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLG-----DWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHh
Confidence 344455555555555555542 33 334 4444444444422 25555555555443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=93.45 E-value=1 Score=29.43 Aligned_cols=45 Identities=11% Similarity=0.153 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
+..+-++.+....+.|+.....+.+++|-+.+| +..|.++|+.++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND-----~alAVR~lE~iK 72 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLND-----FASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhh-----HHHHHHHHHHHH
Confidence 344444444444555555555555555555333 555555555444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=4.1 Score=35.49 Aligned_cols=141 Identities=12% Similarity=0.012 Sum_probs=102.3
Q ss_pred HHHhcCC-hHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043311 96 ALSKDGL-THEALQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQ----------GKEALRVFMRMLASGVAPNAYTYAVL 163 (257)
Q Consensus 96 ~~~~~~~-~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~~~~~t~~~l 163 (257)
.+.+.|. .++|++.++.+.+. .|+ ...|+.-=.++.+.|+ +++++..++.+.+.+- -+...|+--
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR 113 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHR 113 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 3334444 46789999998874 354 4567665555555555 8999999999998753 388889888
Q ss_pred HHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 043311 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ-KVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242 (257)
Q Consensus 164 l~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 242 (257)
-..+.+.+.. .++++.++++.+.+.. +-+...|+.---...+.| .++++.+.++++.+... -|...|...-..+
T Consensus 114 ~w~l~~l~~~---~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll 188 (567)
T 1dce_A 114 CWLLSRLPEP---NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLL 188 (567)
T ss_dssp HHHHHTCSSC---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHH
T ss_pred HHHHHHcccc---cHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHH
Confidence 8888775521 3899999999998753 237778888777777888 89999999999987653 3666776665554
Q ss_pred hc
Q 043311 243 RG 244 (257)
Q Consensus 243 ~~ 244 (257)
.+
T Consensus 189 ~~ 190 (567)
T 1dce_A 189 PQ 190 (567)
T ss_dssp HH
T ss_pred Hh
Confidence 44
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=92.72 E-value=0.73 Score=30.08 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=52.2
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043311 102 LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167 (257)
Q Consensus 102 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~ 167 (257)
+.-+..+-++.+......|++.+..+.+++|.+-+|+..|.++|+-.+.+ +.....+|..+++-.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 45567777888888889999999999999999999999999999988855 233345687777744
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=92.70 E-value=3.1 Score=33.10 Aligned_cols=166 Identities=10% Similarity=0.004 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHhCCCCCcHHH----HHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc---CC
Q 043311 71 PRNLQEIFHKMRTEGLTNNAVK----MFDALSKDG--LTHEALQLFAQIKDKGHMPDVVAHTAVIEAY----ASA---GQ 137 (257)
Q Consensus 71 ~~~a~~~~~~m~~~~~~p~~~~----ll~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~----~~~---~~ 137 (257)
.++|+.+++.+... .|+..+ =-.++...| +++++++.++.+..... -+..+|+---..+ ... ++
T Consensus 49 s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCC
Confidence 35677777777764 333322 122334556 89999999999987521 2345566554444 445 78
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---
Q 043311 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG--DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK--- 212 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~--- 212 (257)
+++++.+++.+.+.. +-|...|+---..+.+.+. ++ ++.++++.+.+... -|...|+---....+.+.
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~-----~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDL-----HNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----TTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCC
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcc-----cChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccch
Confidence 999999999999875 4488899887777777554 55 88888888886533 266777766555556665
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCc
Q 043311 213 ---VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247 (257)
Q Consensus 213 ---~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 247 (257)
++++++.++++..... -|...|...-..+...|.
T Consensus 199 ~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCC
Confidence 8999999999988653 367777776666666555
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=92.22 E-value=1.6 Score=30.12 Aligned_cols=60 Identities=15% Similarity=0.228 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 205 (257)
+..+-++.+...++.|+.....+.+++|-+.+| +..|..+|+.++.. ..+....|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvND-----falAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLND-----FASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 445555555556666666666666666666444 66666666665532 1223334544443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.08 E-value=0.7 Score=38.26 Aligned_cols=54 Identities=19% Similarity=0.180 Sum_probs=25.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 148 (257)
+..+...|+.+++...+..+... -+.+-..|..+|.+|.+.|+..+|++.|+.+
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444455555555444444332 1223445555555555555555555555444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=92.03 E-value=0.94 Score=29.39 Aligned_cols=60 Identities=12% Similarity=-0.014 Sum_probs=43.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKG------HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 151 (257)
.|-..+.+.|+++.|...|+...+.- -.+...++..+-.+|.+.|+++.|...+++..+.
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 46667778888888888877765431 1234567788888888888888888888887763
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.56 E-value=2.3 Score=29.01 Aligned_cols=87 Identities=14% Similarity=0.043 Sum_probs=54.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHH-HHHHHHHHHcCCH
Q 043311 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTY-TAVFEAFVRAQKV 213 (257)
Q Consensus 136 ~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~-~~li~~~~~~~~~ 213 (257)
..+..+.+-|.+-...|. ++..+-..+-.++.+..+ .....++..+++++...+ .| ...-| =.|--++.+.|++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~--~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRY--NDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSS--HHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence 344555555555555443 666666667777777555 445666788888877653 12 22222 2344567888888
Q ss_pred HHHHHHHHHHHHC
Q 043311 214 DEARGLLQQMKAK 226 (257)
Q Consensus 214 ~~a~~~~~~m~~~ 226 (257)
++|.++++.+.+.
T Consensus 91 ~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 91 EKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888888773
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=90.98 E-value=5.3 Score=32.19 Aligned_cols=157 Identities=8% Similarity=-0.055 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHhCCCCCc-HH-HHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHH
Q 043311 71 PRNLQEIFHKMRTEGLTNN-AV-KMFDALSKDG--LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ-GKEALRVF 145 (257)
Q Consensus 71 ~~~a~~~~~~m~~~~~~p~-~~-~ll~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~-~~~a~~~~ 145 (257)
+++++.+++.+........ .. .=--++.+.+ .+++++.+++.+.+.. +-|-..|+----++...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5778888888887543222 21 1112223445 5899999999998752 3467788888888888888 59999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhccC---------CcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc------
Q 043311 146 MRMLASGVAPNAYTYAVLIKGLAAAAD---------GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA------ 210 (257)
Q Consensus 146 ~~m~~~g~~~~~~t~~~ll~~~~~~~~---------~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~------ 210 (257)
+.+.+.+. -|...|+..-..+.+..+ ...+.++++.+.+....... +-|...|+-+-..+.+.
T Consensus 169 ~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcccc
Confidence 99998764 478888877666665421 11256888888888876531 33667777554444444
Q ss_pred -----CCHHHHHHHHHHHHHCCCCCCH
Q 043311 211 -----QKVDEARGLLQQMKAKGFVPDE 232 (257)
Q Consensus 211 -----~~~~~a~~~~~~m~~~g~~p~~ 232 (257)
+.++++.+.++++.+. .||.
T Consensus 247 ~~~~~~~l~~el~~~~elle~--~pd~ 271 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQEL--EPEN 271 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred chHHHHHHHHHHHHHHHHHhh--Cccc
Confidence 4688999999999874 4553
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=90.16 E-value=2.2 Score=29.42 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=51.9
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043311 102 LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167 (257)
Q Consensus 102 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~ 167 (257)
|.-+..+-++.+....+.|++.+..+.+++|.+-+|+..|.++|+-.+.+ ..+....|..+++-.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 44456677777778888999999999999999999999999999988865 344455687777744
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=89.76 E-value=4 Score=28.85 Aligned_cols=116 Identities=14% Similarity=0.162 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh
Q 043311 121 DVVAHTAVIEAYASAGQG------KEALRVFMRMLASGVAPNA----YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 121 ~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~g~~~~~----~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
|..+|=..|...-+.|+. +...++|++-... ++|+. .-|.-+.=-|+.... .+..++|.++|+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~e--i~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKA--IQEPDDARDYFQMARA 88 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHH--HHCGGGCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHH
Confidence 455666666666666666 6666666655543 44432 112211111211111 2236777778877764
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043311 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241 (257)
Q Consensus 191 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 241 (257)
.+-+- ...|-..-.--.+.|+++.|.+++.+....+-.|. ..+.+.|..
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~~n 137 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIALRN 137 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHHHh
Confidence 32222 44555555555678999999999999888876655 455555554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.55 E-value=4.6 Score=29.28 Aligned_cols=134 Identities=13% Similarity=0.159 Sum_probs=89.9
Q ss_pred CCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043311 87 TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166 (257)
Q Consensus 87 ~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~ 166 (257)
..|..+=.....+.|+++.|.++.+++ -+...|..|=......|+++-|.+.|..... |..+.-.
T Consensus 5 ~~D~~~rF~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~L 69 (177)
T 3mkq_B 5 VQDPHIRFDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFL 69 (177)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHH
T ss_pred cCChHHHHHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHH
Confidence 344445566778899999999998765 3788999999999999999999999988762 3344444
Q ss_pred HHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 043311 167 LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246 (257)
Q Consensus 167 ~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 246 (257)
|...|+ .+...++-+.-...| -+|.....+.-.|+++++.++|.+ .|-.|-...+ ....|
T Consensus 70 y~~tg~-----~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~---~~r~~eA~~~------A~t~g 129 (177)
T 3mkq_B 70 YLVTGD-----VNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE---GGSLPLAYAV------AKANG 129 (177)
T ss_dssp HHHHTC-----HHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH---TTCHHHHHHH------HHHTT
T ss_pred HHHhCC-----HHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH---CCChHHHHHH------HHHcC
Confidence 555444 444444433333222 366777778889999999999855 3433332222 22356
Q ss_pred chhhHHhhh
Q 043311 247 FRGVINILF 255 (257)
Q Consensus 247 ~~~~~~~l~ 255 (257)
..+.++++.
T Consensus 130 ~~~~a~~~~ 138 (177)
T 3mkq_B 130 DEAAASAFL 138 (177)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 666666553
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=89.51 E-value=4 Score=28.45 Aligned_cols=138 Identities=12% Similarity=-0.018 Sum_probs=85.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043311 68 PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147 (257)
Q Consensus 68 ~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 147 (257)
.|..++..++..+.....-....+=+|--..-.-+-+-..++++...+. -|.. .+|++.....-+-.
T Consensus 20 dG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi~C~~~ 86 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVVECGVI 86 (172)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHHHHHHH
Confidence 4666677777666665332222211333333334444445555554432 3332 34455555444433
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 043311 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227 (257)
Q Consensus 148 m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 227 (257)
+ ..+...+...+..... .|.-+.-.+++.++.. +.+|+....-.+-.+|.+.|+..++.+++.+..+.|
T Consensus 87 ~-----n~~se~vd~ALd~lv~-----~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 87 N-----NTLNEHVNKALDILVI-----QGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp T-----TCCCHHHHHHHHHHHH-----TTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred h-----cchHHHHHHHHHHHHH-----hccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3 2245566777778887 5557888888888644 356788888889999999999999999999999999
Q ss_pred CC
Q 043311 228 FV 229 (257)
Q Consensus 228 ~~ 229 (257)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 74
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.47 E-value=4.2 Score=28.69 Aligned_cols=56 Identities=13% Similarity=0.036 Sum_probs=25.7
Q ss_pred HHHHHhcC---ChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043311 94 FDALSKDG---LTHEALQLFAQIKDKGHMP--DVVAHTAVIEAYASAGQGKEALRVFMRMLA 150 (257)
Q Consensus 94 l~~~~~~~---~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 150 (257)
--++++++ +++++..+|++..+.. .| +...+-.+=-+|.+.|++++|.+.++.+.+
T Consensus 39 a~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 39 AWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33444444 3345555555555432 12 122222333334555555555555555554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.14 E-value=2.3 Score=35.06 Aligned_cols=69 Identities=17% Similarity=0.151 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh-----CCCCCCHHH
Q 043311 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG-----KGMRPNAGT 199 (257)
Q Consensus 125 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~ 199 (257)
...++..+...|+.+++...+..+.... +.+...|..+|.++.+ .|+..+|.+.|+.+.. .|+.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~-----~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYL-----SDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHT-----TTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4456666777788888877777776542 5577788888888887 4447777777776653 477777655
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=88.96 E-value=3 Score=34.24 Aligned_cols=73 Identities=7% Similarity=-0.033 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 043311 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233 (257)
Q Consensus 154 ~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 233 (257)
..+..+|.++.-.+...| +++.|...++.....+ |+...|..+=..+.-.|++++|.+.|++.... .|...
T Consensus 274 ~~~a~~~~alal~~l~~g-----d~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~ 344 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKG-----KTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGAN 344 (372)
T ss_dssp TTCHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHH
T ss_pred CcCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcC
Confidence 445566666555555423 3666666666665543 56666666666666666666666666665553 45555
Q ss_pred HH
Q 043311 234 AV 235 (257)
Q Consensus 234 t~ 235 (257)
||
T Consensus 345 t~ 346 (372)
T 3ly7_A 345 TL 346 (372)
T ss_dssp HH
T ss_pred hH
Confidence 54
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A | Back alignment and structure |
|---|
Probab=88.80 E-value=0.39 Score=36.18 Aligned_cols=80 Identities=5% Similarity=-0.002 Sum_probs=38.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH-----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhc
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-----KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVA--HTAVIEAYASA 135 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~ 135 (257)
...+..|+.+.+..+++.+.+.|..++.. +.+...+..|+.+ +++.+.+.|..++... -.+.+...+..
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 89 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEH 89 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence 34455677777766666665555444321 3444445556543 3334444554443221 11223333445
Q ss_pred CChHHHHHHHH
Q 043311 136 GQGKEALRVFM 146 (257)
Q Consensus 136 ~~~~~a~~~~~ 146 (257)
|+.+-+..+++
T Consensus 90 ~~~~~~~~Ll~ 100 (241)
T 1k1a_A 90 RSPTCLRALLD 100 (241)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 55544444433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.73 E-value=6.3 Score=28.57 Aligned_cols=130 Identities=9% Similarity=0.032 Sum_probs=88.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEAL 142 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 142 (257)
....+.|+++.|.++.+.+ +....+..|-+...+.|+++-|.+.|..... |..+.-.|.-.|+.++..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3456789999999997766 2233455799999999999999999998654 667777788899987766
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043311 143 RVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222 (257)
Q Consensus 143 ~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 222 (257)
.+-+.-...| -++.....+.-.|+ ++++.++|.+... -|.. .-.....|.-+.|.++.+.
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGd-----v~~~i~lL~~~~r---~~eA------~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNS-----TKERSSIFAEGGS---LPLA------YAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTC-----HHHHHHHHHHTTC---HHHH------HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCC-----HHHHHHHHHHCCC---hHHH------HHHHHHcCcHHHHHHHHHH
Confidence 5554444443 24555555556444 9999998866432 1211 1112336778888888877
Q ss_pred HH
Q 043311 223 MK 224 (257)
Q Consensus 223 m~ 224 (257)
+.
T Consensus 141 ~~ 142 (177)
T 3mkq_B 141 AE 142 (177)
T ss_dssp TT
T ss_pred hC
Confidence 63
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.16 E-value=5.3 Score=33.41 Aligned_cols=119 Identities=9% Similarity=0.006 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHHHhCCCCC-----cHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHH
Q 043311 69 TDPRNLQEIFHKMRTEGLTN-----NAVKMFDALSKDGLTHEALQLFAQIKDKGHMP--DVVAHTAVIEAYASAGQGKEA 141 (257)
Q Consensus 69 ~~~~~a~~~~~~m~~~~~~p-----~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~~~~~~a 141 (257)
...+...+......+..... ....+-..|.+.|+.+.|.++|.++......+ -+..|-..|+.+...+++..+
T Consensus 108 ~~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~ 187 (429)
T 4b4t_R 108 SKIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYV 187 (429)
T ss_dssp CCHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHH
Confidence 34555555555555533221 22358899999999999999999998764333 356788899999999999999
Q ss_pred HHHHHHHHHC---CCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh
Q 043311 142 LRVFMRMLAS---GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 142 ~~~~~~m~~~---g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
...+.+.... +-.++... -++.|.-.-....+.+..|.+.|-+...
T Consensus 188 ~~~~~ka~~~~~~~~d~~~~~---~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 188 KEKLEAVNSMIEKGGDWERRN---RYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHHHHHTTCCCTHHHH---HHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCHHHHH---HHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 9999887632 33333322 2222222111224558888877776553
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=86.95 E-value=4.4 Score=26.01 Aligned_cols=48 Identities=8% Similarity=0.065 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 178 LGDAQKYLMEMVGK------GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 178 ~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
+..|...|+...+. +-.+....+..|-.++.+.|+++.|..++++...
T Consensus 21 y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 21 YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 55555555544321 0112334566666666666666666666666654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=86.09 E-value=11 Score=29.83 Aligned_cols=115 Identities=13% Similarity=0.004 Sum_probs=79.9
Q ss_pred HHHHHHHHHHH-Hhc--CC------hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 043311 122 VVAHTAVIEAY-ASA--GQ------GKEALRVFMRMLASGVAPN---AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 122 ~~~~~~li~~~-~~~--~~------~~~a~~~~~~m~~~g~~~~---~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
...|..++.+- ... |+ ...|...+++..+ +.|+ -..|..+-..|...-..-.|..++|.++|++-.
T Consensus 154 ~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL 231 (301)
T 3u64_A 154 TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT 231 (301)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH
Confidence 45677766643 332 43 3566666666665 4566 467888888888853222345999999999988
Q ss_pred hCCCCCC--HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCC--CCHHHHHHHHH
Q 043311 190 GKGMRPN--AGTYTAVFEAFVRA-QKVDEARGLLQQMKAKGFV--PDEKAVKEALI 240 (257)
Q Consensus 190 ~~g~~p~--~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~--p~~~t~~~ll~ 240 (257)
+ +.|+ ..++...-+.++.. |+.+.+.+++++....... |+....+.+-+
T Consensus 232 ~--LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q 285 (301)
T 3u64_A 232 R--YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQ 285 (301)
T ss_dssp H--HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHH
T ss_pred H--hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHH
Confidence 6 3563 66777777888884 9999999999999998777 77655554433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=85.04 E-value=14 Score=29.97 Aligned_cols=174 Identities=9% Similarity=-0.034 Sum_probs=112.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCcHHH----HHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-ChH
Q 043311 67 EPTDPRNLQEIFHKMRTEGLTNNAVK----MFDALSKDG-LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA-G-QGK 139 (257)
Q Consensus 67 ~~~~~~~a~~~~~~m~~~~~~p~~~~----ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-~-~~~ 139 (257)
+.+..++|+++++.+...+ |+..+ --..+...| .+++++++++.+.+.. +-+..+|+---..+.+. + +++
T Consensus 66 ~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred hCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 3344456666666666542 32221 112233456 5999999999998753 23567888877777776 6 889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCc---chhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN---AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK---- 212 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~---- 212 (257)
+++++++.+.+.. +-|...|+---..+.+.+..+ ...++++.+.++.+.+... -|...|+---..+.+.+.
T Consensus 143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccc
Confidence 9999999999775 347888886555555533211 2234488888888876532 377778877777777665
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 043311 213 ---VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246 (257)
Q Consensus 213 ---~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 246 (257)
++++++++++..... .-|...|..+-..+.+.|
T Consensus 221 ~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 788999998888753 236666665444444433
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.48 E-value=6.4 Score=25.59 Aligned_cols=85 Identities=19% Similarity=0.170 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043311 69 TDPRNLQEIFHKMRTEGLTNNAVKMFD--ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146 (257)
Q Consensus 69 ~~~~~a~~~~~~m~~~~~~p~~~~ll~--~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 146 (257)
...++|..|-+.+...+. ...+++|+ .+...|++++|..+.+.+. .||...|-+|- -.+.|-.+++...+.
T Consensus 20 H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLA 92 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 345666666666666555 44445544 3456667777666554443 46666666553 245666666666666
Q ss_pred HHHHCCCCCCHHHHH
Q 043311 147 RMLASGVAPNAYTYA 161 (257)
Q Consensus 147 ~m~~~g~~~~~~t~~ 161 (257)
+|..+| .|....|.
T Consensus 93 ~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 93 GLGGSS-DPALADFA 106 (115)
T ss_dssp HHHTCS-SHHHHHHH
T ss_pred HHHhCC-CHHHHHHH
Confidence 666655 33444443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=84.35 E-value=5.9 Score=25.05 Aligned_cols=68 Identities=10% Similarity=0.039 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN-AGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 155 ~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
.|...+..+-.++...++ ....+++..+|++..+. .|+ ......+-..+.+.|++++|...|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~--~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHK--QAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTT--TCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455556666666654333 22356777777776653 343 344555556677777888888888777765
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=84.13 E-value=6.7 Score=25.54 Aligned_cols=85 Identities=22% Similarity=0.239 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043311 69 TDPRNLQEIFHKMRTEGLTNNAVKMFD--ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146 (257)
Q Consensus 69 ~~~~~a~~~~~~m~~~~~~p~~~~ll~--~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 146 (257)
...++|..|-+.+...+. ...+++|+ .+...|++++|..+.+.+. .||...|-+|-. .+.|-.+++...+.
T Consensus 21 H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 345566666666666555 34444544 3445666666666554443 466666655532 45565555555555
Q ss_pred HHHHCCCCCCHHHHH
Q 043311 147 RMLASGVAPNAYTYA 161 (257)
Q Consensus 147 ~m~~~g~~~~~~t~~ 161 (257)
+|..+| .|....|.
T Consensus 94 ~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 94 RLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHTTCC-CHHHHHHH
T ss_pred HHHhCC-CHHHHHHH
Confidence 665554 33333333
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=82.27 E-value=9 Score=26.01 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHCCCCC-CH-HHHHHHHHHHHhccCCcchh
Q 043311 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE---ALRVFMRMLASGVAP-NA-YTYAVLIKGLAAAADGNAKI 177 (257)
Q Consensus 103 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~g~~~-~~-~t~~~ll~~~~~~~~~~~~~ 177 (257)
...+.+-|....+.|. ++..+--.+-.++.++.+... +..+++++.+.+ .| +. ...-.+--++.+.|+
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~----- 89 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKE----- 89 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhh-----
Confidence 3444444544444333 444444444455555554433 666666666543 12 22 222223334556444
Q ss_pred HHHHHHHHHHHHh
Q 043311 178 LGDAQKYLMEMVG 190 (257)
Q Consensus 178 ~~~a~~~~~~m~~ 190 (257)
++.|.+.++.+.+
T Consensus 90 Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 90 YEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777665
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.02 E-value=13 Score=31.32 Aligned_cols=153 Identities=13% Similarity=0.073 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHHhCC----CCCc-H---HHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHH--HHHHHHHHHhcCC
Q 043311 69 TDPRNLQEIFHKMRTEG----LTNN-A---VKMFDALSKDGLTHEALQLFAQIKDK-GHMPDVVA--HTAVIEAYASAGQ 137 (257)
Q Consensus 69 ~~~~~a~~~~~~m~~~~----~~p~-~---~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~--~~~li~~~~~~~~ 137 (257)
|+++.|.+.+-.+.+.. -.++ . ..++..|.+.|+|+...+.+..+.+. |..+...+ -+.++.-......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 77888888877666521 1111 1 24888888889998887777766543 43333222 1223333333333
Q ss_pred hHH--HHHHHHHHHH--CC-CCC---CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh--CCCCCC---HHHHHHHH
Q 043311 138 GKE--ALRVFMRMLA--SG-VAP---NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG--KGMRPN---AGTYTAVF 204 (257)
Q Consensus 138 ~~~--a~~~~~~m~~--~g-~~~---~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~--~g~~p~---~~~~~~li 204 (257)
.+. -..+.+.... .| +-. .......|.+.+.. .|.+.+|..+++++.. .|.... ...|..-+
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~-----~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKE-----EGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 184 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 322 1111111110 11 222 22344556666677 4448888888888763 232222 23566677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC
Q 043311 205 EAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
+.|...+++..|..++.+....
T Consensus 185 rl~l~~~d~~~a~~~~~ki~~~ 206 (445)
T 4b4t_P 185 ELSILKGDYSQATVLSRKILKK 206 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 7888888888888888877554
|
| >2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A* | Back alignment and structure |
|---|
Probab=81.92 E-value=6.4 Score=27.35 Aligned_cols=63 Identities=11% Similarity=0.159 Sum_probs=47.4
Q ss_pred HHHHHHhCCCCCcHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 043311 77 IFHKMRTEGLTNNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 77 ~~~~m~~~~~~p~~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 139 (257)
+-+.+.+.|+..+.. .++..+...+..-.|.++++.+.+.+...+..|-..-|+.+...|-+.
T Consensus 9 ~~~~l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 9 ALETLKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 334566788777755 588888877777778999999988877777877777788888887543
|
| >2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=81.01 E-value=5.9 Score=27.76 Aligned_cols=64 Identities=11% Similarity=0.191 Sum_probs=47.0
Q ss_pred HHHHHHHhCCCCCcHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 043311 76 EIFHKMRTEGLTNNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 76 ~~~~~m~~~~~~p~~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 139 (257)
++-+.+.+.|+.++.. .++..+...+..-.|.++++.+.+.+...+..|.-..|..+...|-+.
T Consensus 13 ~~~~~l~~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 13 RLRMSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHHHCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 3445566788877765 588888877777789999999988877778877777788888887543
|
| >2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A | Back alignment and structure |
|---|
Probab=80.06 E-value=16 Score=27.01 Aligned_cols=69 Identities=17% Similarity=0.280 Sum_probs=50.5
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCC
Q 043311 125 HTAVIEAYAS---AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194 (257)
Q Consensus 125 ~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~ 194 (257)
+--+|+++.| ..|.+.|+-++-+|.+.| .|.-..=-.++-+....|..+-.-+..|...++..+.-|.+
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3445666655 468899999999999998 77777777777777777765555677777777777766653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 257 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.02 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 98.97 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.95 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.85 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.7 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.56 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.05 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.04 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.04 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 97.97 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.87 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.84 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.82 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 97.79 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 97.78 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.77 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.73 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.73 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.69 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.67 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 97.65 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.47 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.46 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.39 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.38 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.36 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.3 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.14 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.0 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 96.97 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.94 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 96.91 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 96.89 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 96.79 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 96.63 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 96.58 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.44 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 96.41 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 96.38 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 96.35 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.25 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 95.97 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 95.6 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 95.55 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 95.28 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 94.79 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 94.3 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 93.18 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 92.8 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 92.57 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 91.8 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 91.56 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 89.84 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 89.16 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 85.82 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 85.27 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 85.15 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 83.21 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 82.9 | |
| d1mzba_ | 134 | Ferric uptake regulation protein, FUR {Pseudomonas | 81.09 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 80.59 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=4.2e-08 Score=78.60 Aligned_cols=184 Identities=14% Similarity=0.087 Sum_probs=110.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+...|+++.|...+....+... .++. ..+-..+...|++++|...|....+.. ..+...+..+-..+.+.|++++
T Consensus 177 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 255 (388)
T d1w3ba_ 177 CVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDL 255 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred ccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHH
Confidence 445566777777777766655321 1111 135556666777777777776665542 2344556666666677777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 220 (257)
|...|++..+.. +-+..+|..+...+...|+ +++|.+.++..... .+.+...+..+...+...|++++|.+.|
T Consensus 256 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 328 (388)
T d1w3ba_ 256 AIDTYRRAIELQ-PHFPDAYCNLANALKEKGS-----VAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLY 328 (388)
T ss_dssp HHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSC-----HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-----HHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHH
Confidence 777777666542 2345666666666666333 67777776665543 2335556666666677777777777777
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 221 QQMKAKGFVP-DEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 221 ~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
++..+. .| +..++..+-..+...|+.+.|...|+
T Consensus 329 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 363 (388)
T d1w3ba_ 329 RKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp HHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 766543 33 34556666666777777777766654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=2.4e-08 Score=80.00 Aligned_cols=174 Identities=13% Similarity=0.012 Sum_probs=142.5
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+...|++++|...+......+...... .+-..+.+.|++++|.+.|+...+.. +-+..+|..+-..+...|++++
T Consensus 211 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~ 289 (388)
T d1w3ba_ 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHH
T ss_pred hhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 67788999999999999988855433322 46788899999999999999988742 2346789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGL 219 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~ 219 (257)
|.+.|+..... .+.+...+..+...+... |++++|.+.|++..+. .| +..++..+-..|.+.|++++|...
T Consensus 290 A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~ 361 (388)
T d1w3ba_ 290 AEDCYNTALRL-CPTHADSLNNLANIKREQ-----GNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHTT-----TCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHhhhcc-CCccchhhhHHHHHHHHC-----CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999988765 366788888999999884 4499999999998763 45 456788888999999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHhhcCCc
Q 043311 220 LQQMKAKGFVP-DEKAVKEALIDKRGQGF 247 (257)
Q Consensus 220 ~~~m~~~g~~p-~~~t~~~ll~~~~~~g~ 247 (257)
|++..+. .| +...+..+-..+.+.||
T Consensus 362 ~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 362 YKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 9998864 56 46778888888877765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=1.8e-07 Score=73.74 Aligned_cols=187 Identities=9% Similarity=-0.033 Sum_probs=129.5
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC-CcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT-NNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+.+.|++++|.+.|+...+..-. +... .+-.+|...|+++.|...|....+.. +-+...|..+...|...|++++
T Consensus 27 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~ 105 (323)
T d1fcha_ 27 LRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQ 105 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccccc
Confidence 5677888888888888888774321 2222 36677788888888888888776642 1245677777788888888888
Q ss_pred HHHHHHHHHHCC--------------------------------------------------CCCCHHHHHHHHHHHHhc
Q 043311 141 ALRVFMRMLASG--------------------------------------------------VAPNAYTYAVLIKGLAAA 170 (257)
Q Consensus 141 a~~~~~~m~~~g--------------------------------------------------~~~~~~t~~~ll~~~~~~ 170 (257)
|.+.+++..... -..+...+..+-..+..
T Consensus 106 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~- 184 (323)
T d1fcha_ 106 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL- 184 (323)
T ss_dssp HHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH-
T ss_pred cccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH-
Confidence 888887765421 01223344444445555
Q ss_pred cCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhh
Q 043311 171 ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250 (257)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 250 (257)
.|.+++|...|+...... +-+...|..+-..|...|++++|.+.|++..+.. +-+...+..+-.+|...|+.+.
T Consensus 185 ----~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~ 258 (323)
T d1fcha_ 185 ----SGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHRE 258 (323)
T ss_dssp ----TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred ----HHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHH
Confidence 344888888888876531 2245677788888888899999999988887642 2246677788888888888888
Q ss_pred HHhhhcC
Q 043311 251 INILFGK 257 (257)
Q Consensus 251 ~~~l~~k 257 (257)
|...|+|
T Consensus 259 A~~~~~~ 265 (323)
T d1fcha_ 259 AVEHFLE 265 (323)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887753
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.85 E-value=4.5e-07 Score=71.37 Aligned_cols=180 Identities=9% Similarity=-0.002 Sum_probs=123.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHH----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043311 69 TDPRNLQEIFHKMRTEGLTNNAV----KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRV 144 (257)
Q Consensus 69 ~~~~~a~~~~~~m~~~~~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 144 (257)
+..+.+..+|++..+.. .|... .....+.+.|+++.|..+|+.+.+........+|...+..+.+.|+.+.|.++
T Consensus 78 ~~~~~a~~i~~ral~~~-~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i 156 (308)
T d2onda1 78 LFSDEAANIYERAISTL-LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence 45577788888877643 23321 35666677888888888888887754333355788888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHH-HHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043311 145 FMRMLASGVAPNAYTYAVLIKG-LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223 (257)
Q Consensus 145 ~~~m~~~g~~~~~~t~~~ll~~-~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 223 (257)
|....+.+. .+...|...... +... |..+.|..+|+..... .+-+...|...++...+.|+++.|..+|++.
T Consensus 157 ~~~al~~~~-~~~~~~~~~a~~e~~~~-----~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~a 229 (308)
T d2onda1 157 FKKAREDAR-TRHHVYVTAALMEYYCS-----KDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 229 (308)
T ss_dssp HHHHHTSTT-CCTHHHHHHHHHHHHTS-----CCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 888876642 233333332222 2222 3378888888887764 3345677888888888888888888888888
Q ss_pred HHC-CCCCC--HHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 224 KAK-GFVPD--EKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 224 ~~~-g~~p~--~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
... +..|+ ...|...+.--...|+.+.+.++++
T Consensus 230 i~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~ 265 (308)
T d2onda1 230 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 776 34443 4567777777677788887777664
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.70 E-value=1.8e-06 Score=67.84 Aligned_cols=181 Identities=10% Similarity=0.023 Sum_probs=131.6
Q ss_pred CHHHHHHHHHHHHhC-CCCCcHH-HHHHHH--------------HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043311 70 DPRNLQEIFHKMRTE-GLTNNAV-KMFDAL--------------SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133 (257)
Q Consensus 70 ~~~~a~~~~~~m~~~-~~~p~~~-~ll~~~--------------~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 133 (257)
..+.+..+|+++... +..|... ..+..+ ...+..+.|..+|+...+...+-+...|......+.
T Consensus 31 ~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~ 110 (308)
T d2onda1 31 ITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 345677788877763 3334432 111111 122345788899998887655556778999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCC
Q 043311 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA-FVRAQK 212 (257)
Q Consensus 134 ~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~ 212 (257)
+.|+++.|..+|+++.+.........|...+..+.+.+ .++.|.++|+...+.+. .+...|...... +...|+
T Consensus 111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~-----~~~~ar~i~~~al~~~~-~~~~~~~~~a~~e~~~~~~ 184 (308)
T d2onda1 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE-----GIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHH-----CHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCC
T ss_pred hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhccC
Confidence 99999999999999987643334567899999988844 49999999999887532 233444333332 344689
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 213 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.+.|..+|+++... ..-+...+...+....+.|+.+.|..+|++
T Consensus 185 ~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ 228 (308)
T d2onda1 185 KSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFER 228 (308)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99999999999986 345678899999999999999999999874
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=6.8e-06 Score=64.34 Aligned_cols=156 Identities=13% Similarity=-0.005 Sum_probs=119.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~ 171 (257)
.-..+.+.|++++|.+.|+...+. .| +...|..+-.+|...|++++|...|++..+.. +-+...|..+...+...|
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 455678999999999999999885 34 57789999999999999999999999988753 336778888888888865
Q ss_pred CCcchhHHHHHHHHHHH-------------------------------------------------Hh-CCCCCCHHHHH
Q 043311 172 DGNAKILGDAQKYLMEM-------------------------------------------------VG-KGMRPNAGTYT 201 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m-------------------------------------------------~~-~g~~p~~~~~~ 201 (257)
+ ++.|.+.++.. .. ..-.++...+.
T Consensus 102 ~-----~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~ 176 (323)
T d1fcha_ 102 L-----QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 176 (323)
T ss_dssp C-----HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred c-----ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccch
Confidence 5 44444444433 22 11123456677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.+-..+...|++++|...|++..... +-+...+..+-..+...|+.+.|...|++
T Consensus 177 ~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 231 (323)
T d1fcha_ 177 GLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRR 231 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHH
Confidence 77788889999999999999987653 23567788888899999999999988763
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.05 E-value=0.0011 Score=49.51 Aligned_cols=182 Identities=10% Similarity=-0.019 Sum_probs=99.7
Q ss_pred ccccCCCCHHHHHHHHHHHHhCC-CCCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEG-LTNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~ 139 (257)
..+.+.|++++|.+.|+...+.. -.+... .+-.+|.+.|++++|.+.|+...+. .| +..+|..+-.+|...|+++
T Consensus 45 ~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~ 122 (259)
T d1xnfa_ 45 VLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDK 122 (259)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHHHHHhhHH
Confidence 66677888888888888877632 222222 3666778888888888888887764 23 3456777777788888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----HHH
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK----VDE 215 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~----~~~ 215 (257)
+|...|+...+.. +.+......+..++.+ .+..+....+....... .++...++ ++..+..... .+.
T Consensus 123 ~A~~~~~~al~~~-p~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~ 193 (259)
T d1xnfa_ 123 LAQDDLLAFYQDD-PNDPFRSLWLYLAEQK-----LDEKQAKEVLKQHFEKS--DKEQWGWN-IVEFYLGNISEQTLMER 193 (259)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHH-----HCHHHHHHHHHHHHHHS--CCCSTHHH-HHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHhhc-cccHHHHHHHHHHHHH-----hhhHHHHHHHHHHhhcc--chhhhhhh-HHHHHHHHHHHHHHHHH
Confidence 8888888777653 2233333333333333 22233444444444432 11222222 1222221111 122
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 216 ARGLLQQMKAKGFVPD-EKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 216 a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
+...+..... ..|+ ..++..+-..+...|+.+.|...|+|
T Consensus 194 ~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 234 (259)
T d1xnfa_ 194 LKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKL 234 (259)
T ss_dssp HHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2211111111 1111 23455566778889999999888764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=2.9e-05 Score=52.02 Aligned_cols=109 Identities=16% Similarity=0.079 Sum_probs=76.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 043311 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA-GTYTAVF 204 (257)
Q Consensus 126 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li 204 (257)
..+++.+...+++++|.+.|++....+ +.+..++..+-.++.+.++ .+.+++|.++|+.....+-.|+. .+|..+-
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~--~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRY--NDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSS--HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 457777888888888888888887754 4467777777777776555 45577788888887765433332 3556667
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043311 205 EAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239 (257)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 239 (257)
.+|.+.|++++|.+.|++..+ +.|+..-...+.
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l~ 112 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQ--TEPQNNQAKELE 112 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHH--hCcCCHHHHHHH
Confidence 778888888888888888887 456644433333
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=0.00033 Score=50.57 Aligned_cols=137 Identities=15% Similarity=0.062 Sum_probs=102.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcc
Q 043311 96 ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~ 175 (257)
.+...|+++.|.+.|+.+ ..|+..+|..+=.+|.+.|++++|.+.|++-.+.+ +-+...|..+-..+.+.|+
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~--- 85 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK--- 85 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC---
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhcc---
Confidence 457789999999999864 34678888889999999999999999999988764 4467888888888888555
Q ss_pred hhHHHHHHHHHHHHhC------------CCC--CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043311 176 KILGDAQKYLMEMVGK------------GMR--PN-AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240 (257)
Q Consensus 176 ~~~~~a~~~~~~m~~~------------g~~--p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 240 (257)
+++|.+.|+..... |.. ++ ..++..+-.++.+.|++++|.+.+.+..+....+....+...+.
T Consensus 86 --~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~ 163 (192)
T d1hh8a_ 86 --YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAME 163 (192)
T ss_dssp --HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHH
T ss_pred --HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHH
Confidence 99999888886532 111 11 23444566678899999999999999887666655444544444
Q ss_pred Hh
Q 043311 241 DK 242 (257)
Q Consensus 241 ~~ 242 (257)
..
T Consensus 164 ~~ 165 (192)
T d1hh8a_ 164 CV 165 (192)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=0.00067 Score=52.89 Aligned_cols=56 Identities=11% Similarity=-0.016 Sum_probs=25.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043311 95 DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151 (257)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 151 (257)
..+.+.|++++|++.|+.+.+. -+-+...|..+-..+.+.|++++|.+.|+...+.
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~-dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~ 175 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQ-DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 175 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHhhhhhh-hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3344444555555555544442 1113444444555555555555555555554443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.87 E-value=0.00033 Score=53.87 Aligned_cols=173 Identities=8% Similarity=-0.064 Sum_probs=108.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHH
Q 043311 69 TDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDK----GHMPD-VVAHTAVIEAYASAGQGKEALR 143 (257)
Q Consensus 69 ~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~~~~~~a~~ 143 (257)
+++++|.++|... -..|...|++++|.+.|....+- +-.++ ..+|+.+-.+|.+.|++++|..
T Consensus 31 ~~~~~Aa~~y~~a------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~ 98 (290)
T d1qqea_ 31 YKFEEAADLCVQA------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD 98 (290)
T ss_dssp HHHHHHHHHHHHH------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHH------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3456666666554 35677888899988888876542 22222 3578888888888999999988
Q ss_pred HHHHHHHC----CC-CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHHcCCH
Q 043311 144 VFMRMLAS----GV-APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG----KGMRPN-AGTYTAVFEAFVRAQKV 213 (257)
Q Consensus 144 ~~~~m~~~----g~-~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~~~~ 213 (257)
.+++..+. |- .....++..+...|... .|.++.|.++++...+ .+-.+. ..+|..+...+...|++
T Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y 174 (290)
T d1qqea_ 99 SLENAIQIFTHRGQFRRGANFKFELGEILEND----LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhHHhhhcccchhHHHHHHHHHHhHhhH----HHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChH
Confidence 88865532 11 11134444555555331 2348888888876542 222221 24577788888899999
Q ss_pred HHHHHHHHHHHHCCCCC-----CH-HHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 214 DEARGLLQQMKAKGFVP-----DE-KAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 214 ~~a~~~~~~m~~~g~~p-----~~-~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
++|..+|++.....-.. +. ..+......+...|+.+.+.+.|++
T Consensus 175 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~ 224 (290)
T d1qqea_ 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224 (290)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999887652211 11 1223344456677888888777653
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=0.00045 Score=45.44 Aligned_cols=87 Identities=16% Similarity=0.091 Sum_probs=38.5
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcc
Q 043311 96 ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~ 175 (257)
.+.+.|++++|..+|.+..+.. +-+...|..+=.+|.+.|++++|...+....+.+ +.+...|..+-..+...|+
T Consensus 12 ~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~--- 86 (117)
T d1elwa_ 12 KALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR--- 86 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC---
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC---
Confidence 3444455555555555444321 1233344444444444455555555544444432 2244444444444444222
Q ss_pred hhHHHHHHHHHHHH
Q 043311 176 KILGDAQKYLMEMV 189 (257)
Q Consensus 176 ~~~~~a~~~~~~m~ 189 (257)
+++|...|+...
T Consensus 87 --~~~A~~~~~~a~ 98 (117)
T d1elwa_ 87 --FEEAKRTYEEGL 98 (117)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHH
Confidence 444444444444
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=0.00061 Score=47.32 Aligned_cols=90 Identities=13% Similarity=0.003 Sum_probs=72.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCc
Q 043311 95 DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174 (257)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~ 174 (257)
..|.+.|++++|...|+...+.. +-+...|..+-.+|...|++++|...|+...+.+ +-+...|..+..++...|+
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~-- 93 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK-- 93 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--
T ss_pred HHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC--
Confidence 46778899999999999888753 2356788888888999999999999999888764 4466888888888888555
Q ss_pred chhHHHHHHHHHHHHhC
Q 043311 175 AKILGDAQKYLMEMVGK 191 (257)
Q Consensus 175 ~~~~~~a~~~~~~m~~~ 191 (257)
+++|...+++....
T Consensus 94 ---~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 ---FRAALRDYETVVKV 107 (159)
T ss_dssp ---HHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHc
Confidence 89999988888764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=0.0031 Score=46.78 Aligned_cols=191 Identities=9% Similarity=-0.013 Sum_probs=115.4
Q ss_pred hhhcccCCCCccchhhcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhCCC-CCcHH-HHHHHHHhcCChHHH
Q 043311 32 QRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGL-TNNAV-KMFDALSKDGLTHEA 106 (257)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~ll~~~~~~~~~~~a 106 (257)
......+..+.+...+.+.-.+.|+...... .++.+.|++++|.+.|++..+..- .+... .+-.+|...|++++|
T Consensus 45 ~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A 124 (259)
T d1xnfa_ 45 VLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 124 (259)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHH
Confidence 3445567777777776666666666433222 888999999999999999998432 22222 477888999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHH
Q 043311 107 LQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186 (257)
Q Consensus 107 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~ 186 (257)
.+.|+...+.. +.+......+-.++.+.+..+.+..+........- +...++. +..+..... ..+..+.+...+.
T Consensus 125 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~ 199 (259)
T d1xnfa_ 125 QDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK--EQWGWNI-VEFYLGNIS-EQTLMERLKADAT 199 (259)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC--CSTHHHH-HHHHTTSSC-HHHHHHHHHHHCC
T ss_pred HHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch--hhhhhhH-HHHHHHHHH-HHHHHHHHHHHHH
Confidence 99999987753 12344444444455556665666666665555422 2222322 222211110 1222333333322
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 043311 187 EMVGKGMRPN-AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231 (257)
Q Consensus 187 ~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 231 (257)
.... ..|+ ..+|..+-..|...|++++|.+.|++.... .|+
T Consensus 200 ~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~ 241 (259)
T d1xnfa_ 200 DNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVH 241 (259)
T ss_dssp SHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCT
T ss_pred Hhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCC
Confidence 2111 1122 245666778899999999999999998864 454
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=0.00067 Score=52.45 Aligned_cols=225 Identities=10% Similarity=-0.000 Sum_probs=129.5
Q ss_pred hhhcccCCCCccchhhcccCCCCCCccc------cc-c-ccccCCCCHHHHHHHHHHHHhCC-CCCcH---H----HHHH
Q 043311 32 QRSLSSSSDQPTKKYVNTKSKLPPPYDP------FK-K-VVDEEPTDPRNLQEIFHKMRTEG-LTNNA---V----KMFD 95 (257)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~------~~-~-~~~~~~~~~~~a~~~~~~m~~~~-~~p~~---~----~ll~ 95 (257)
+.....++.+.+..+..+.....|+... +. + ..+...|++++|.+.|+...+.. -.++. . .+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 3445566666666665443333333221 11 1 56667788888888888776521 11111 1 2556
Q ss_pred HHHhcCChHHHHHHHHHHHh----CCCC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCCHHHHHHHH
Q 043311 96 ALSKDGLTHEALQLFAQIKD----KGHM--PD-VVAHTAVIEAYASAGQGKEALRVFMRMLASG----VAPNAYTYAVLI 164 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~----~g~~--p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~~~~~t~~~ll 164 (257)
.+...|++..+...+....+ .+.. +. ...+..+-..+...|+++.+...+....... ......++....
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 67778888888888776543 2211 11 2345555667788889999888887776432 122223333333
Q ss_pred HHHHhccC------------------------------------CcchhHHHHHHHHHHHHhCCCCC---CHHHHHHHHH
Q 043311 165 KGLAAAAD------------------------------------GNAKILGDAQKYLMEMVGKGMRP---NAGTYTAVFE 205 (257)
Q Consensus 165 ~~~~~~~~------------------------------------~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~li~ 205 (257)
..+...++ ...|.++.|...++......... ....+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 33333222 11244566666665544321111 2234556677
Q ss_pred HHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 206 AFVRAQKVDEARGLLQQMKA----KGFVPD-EKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 206 ~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
.+...|++++|...+++... .+..|+ ...+..+-..+...|+.+.|...|+
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 315 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL 315 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888999999888888763 344443 3455556667888899888888765
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=0.0007 Score=44.44 Aligned_cols=102 Identities=17% Similarity=0.130 Sum_probs=78.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 043311 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209 (257)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (257)
..+.+.|++++|...|++..+.. +-+...|..+-.++...|+ +++|...+....+.+ +.+...|..+-.++..
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~-----~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGD-----YQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-Ccchhhhhccccccccccc-----ccccchhhhhHHHhc-cchhhHHHHHHHHHHH
Confidence 34778899999999999988763 5577888888888888444 999999998887642 3467788888899999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043311 210 AQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240 (257)
Q Consensus 210 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 240 (257)
.|++++|...|++..+. .|+...+...+.
T Consensus 84 ~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~ 112 (117)
T d1elwa_ 84 LNRFEEAKRTYEEGLKH--EANNPQLKEGLQ 112 (117)
T ss_dssp TTCHHHHHHHHHHHHTT--CTTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 99999999999998864 565555444433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.73 E-value=0.0011 Score=50.82 Aligned_cols=188 Identities=10% Similarity=-0.005 Sum_probs=121.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhC----CCCCcHH----HHHHHHHhcCChHHHHHHHHHHHhC----CC-CCCHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE----GLTNNAV----KMFDALSKDGLTHEALQLFAQIKDK----GH-MPDVVAHTAVI 129 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~li 129 (257)
..+...|++++|.+.|....+. +-.++.. .+-.+|.+.|++++|.+.|+...+. |. .....++..+.
T Consensus 45 ~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 124 (290)
T d1qqea_ 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (290)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHH
Confidence 5677889999999999888762 2233322 3677888999999999999866432 21 11244566666
Q ss_pred HHHHh-cCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC-----H-
Q 043311 130 EAYAS-AGQGKEALRVFMRMLAS----GVAP-NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN-----A- 197 (257)
Q Consensus 130 ~~~~~-~~~~~~a~~~~~~m~~~----g~~~-~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~- 197 (257)
..|.. .|++++|...|++..+. +..+ -..+|..+...+...| ++++|.++|+.......... .
T Consensus 125 ~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g-----~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG-----QYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcC-----hHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 66754 69999999999886532 2222 2356777888888844 49999999999875321111 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC---HHHHHHHHHHhhcC--CchhhHHhhh
Q 043311 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV-PD---EKAVKEALIDKRGQ--GFRGVINILF 255 (257)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~---~~t~~~ll~~~~~~--g~~~~~~~l~ 255 (257)
..|...+..+...|+++.|...+++..+.... ++ ......++.++... +.+..+...|
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y 263 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF 263 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 12344455677889999999999998764211 22 23456666666542 2244444444
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.73 E-value=0.00079 Score=48.22 Aligned_cols=91 Identities=15% Similarity=-0.004 Sum_probs=73.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
.=..|.+.|++++|...|....+.. +-+...|+.+-.+|.+.|++++|...|+...+.. +-+..+|..+-.+|...|+
T Consensus 10 ~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~~~~~l~~ 87 (201)
T d2c2la1 10 QGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMES 87 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC
Confidence 3567889999999999999877642 3467788889999999999999999999988642 2257788889999999555
Q ss_pred CcchhHHHHHHHHHHHHh
Q 043311 173 GNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~ 190 (257)
+++|...|+...+
T Consensus 88 -----~~~A~~~~~~al~ 100 (201)
T d2c2la1 88 -----YDEAIANLQRAYS 100 (201)
T ss_dssp -----HHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHH
Confidence 9999999987654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=0.0004 Score=48.32 Aligned_cols=91 Identities=12% Similarity=0.045 Sum_probs=77.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 043311 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209 (257)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (257)
..|.+.|++++|...|++..+.+ +-+...|..+-..|...|+ +++|...|+...+.. +-+...|..+..++..
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~-----~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTEC-----YGYALGDATRAIELD-KKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccc-----cchHHHHHHHHHHHc-ccchHHHHHHHHHHHH
Confidence 35779999999999999999875 4578888889899999555 999999999988642 2355789999999999
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 043311 210 AQKVDEARGLLQQMKAKG 227 (257)
Q Consensus 210 ~~~~~~a~~~~~~m~~~g 227 (257)
.|++++|...+++.....
T Consensus 91 ~g~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVK 108 (159)
T ss_dssp TTCHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 999999999999998853
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.67 E-value=0.001 Score=43.27 Aligned_cols=90 Identities=14% Similarity=-0.029 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 91 VKMFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 91 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
..+-..+.+.|++++|...|++..+. .| +...|..+-.++.+.|++++|...|++..+.. +-+...|..+-..|..
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHH
Confidence 34555667778888888888877664 23 46677777777888888888888888777653 3356777777777777
Q ss_pred ccCCcchhHHHHHHHHHHH
Q 043311 170 AADGNAKILGDAQKYLMEM 188 (257)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~m 188 (257)
.|.+++|.+.|++.
T Consensus 97 -----~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 97 -----EHNANAALASLRAW 110 (112)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHH
Confidence 44477887777764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=0.0011 Score=51.68 Aligned_cols=180 Identities=9% Similarity=-0.006 Sum_probs=134.5
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHH----HHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK----MFDALSKDG-LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 137 (257)
..+.+.+.+++|+++++.+.+. .|+..+ .-.++.+.| ++++|+..++...+.. +-+..+|+.+-..+.+.|+
T Consensus 51 ~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~l~~ 127 (315)
T d2h6fa1 51 AVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRD 127 (315)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHHhhcc
Confidence 5667888999999999999985 444332 334555655 5899999999887642 2357889999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCC----
Q 043311 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQK---- 212 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~---- 212 (257)
+++|+..|+++.+.. +-+...|..+...+...++ +++|.+.++...+. .| +...|+.+-..+.+.+.
T Consensus 128 ~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~-----~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 128 PSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKL-----WDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp CTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-----CTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchh
Confidence 999999999999864 4478999999999999555 89999999998874 34 56677776666666554
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 213 --VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 213 --~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
+++|.+.+....+.. +-|...+..+-..+...|. +.+...+
T Consensus 200 ~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~~-~~~~~~~ 242 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGL-SKYPNLL 242 (315)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCG-GGCHHHH
T ss_pred hhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhcCh-HHHHHHH
Confidence 678888898888753 3467777777666665554 4444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.47 E-value=0.00082 Score=43.75 Aligned_cols=90 Identities=12% Similarity=-0.057 Sum_probs=70.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043311 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207 (257)
Q Consensus 128 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 207 (257)
+=..+.+.|++++|...|++..+.. +-+...|..+-..+.+.++ +++|...|+...+.. +-+...|..+-..|
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~-----~~~A~~~~~~al~~~-p~~~~a~~~la~~y 94 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEK-----DGLAIIALNHARMLD-PKDIAVHAALAVSH 94 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhh-----HHHhhcccccccccc-cccccchHHHHHHH
Confidence 3445778899999999999988763 3367888888888888444 999999999877631 22567788888899
Q ss_pred HHcCCHHHHHHHHHHHH
Q 043311 208 VRAQKVDEARGLLQQMK 224 (257)
Q Consensus 208 ~~~~~~~~a~~~~~~m~ 224 (257)
...|++++|.+.+++..
T Consensus 95 ~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 95 TNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHh
Confidence 99999999999988753
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.46 E-value=0.0013 Score=47.04 Aligned_cols=86 Identities=13% Similarity=-0.072 Sum_probs=70.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCC-CCCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEG-LTNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~ 139 (257)
..+.+.|+++.|...|....+.. -.+... .+-.+|.+.|+++.|...|+...+ +.| +..+|..+-.+|.+.|+++
T Consensus 12 n~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~lg~~~~~l~~~~ 89 (201)
T d2c2la1 12 NRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQLEMESYD 89 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHH
Confidence 45668899999999999887743 222222 367789999999999999999886 445 4678999999999999999
Q ss_pred HHHHHHHHHHH
Q 043311 140 EALRVFMRMLA 150 (257)
Q Consensus 140 ~a~~~~~~m~~ 150 (257)
+|+..|++..+
T Consensus 90 ~A~~~~~~al~ 100 (201)
T d2c2la1 90 EAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.39 E-value=0.0024 Score=45.74 Aligned_cols=116 Identities=12% Similarity=-0.011 Sum_probs=90.5
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 043311 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210 (257)
Q Consensus 131 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 210 (257)
.+...|++++|++.|.++ ..|+..+|..+=..+...|+ +++|.+.|++..+.. +-+...|..+-.+|.+.
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~-----~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~ 83 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKN-----MTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 83 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCC-----chhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhh
Confidence 467889999999999865 46788899999888999555 999999999987642 22556788888899999
Q ss_pred CCHHHHHHHHHHHHHCC------------C--CCC-HHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 211 QKVDEARGLLQQMKAKG------------F--VPD-EKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 211 ~~~~~a~~~~~~m~~~g------------~--~p~-~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
|++++|.+.|++..... . .++ ..++..+-.++...|+.+.|...|.
T Consensus 84 g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~ 144 (192)
T d1hh8a_ 84 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 144 (192)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999987531 1 111 3455566677889999999888764
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.38 E-value=0.0028 Score=44.94 Aligned_cols=121 Identities=10% Similarity=0.036 Sum_probs=78.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCc
Q 043311 95 DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174 (257)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~ 174 (257)
......|++++|.+.|..-.... +... +.......-+...-..+... ....+..+...+...|+
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~-- 82 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGR-- 82 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTC--
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC--
Confidence 45567788888888888776641 1110 00000000111111112111 23567778888888444
Q ss_pred chhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 043311 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA-----KGFVPDEKAV 235 (257)
Q Consensus 175 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~t~ 235 (257)
+++|...++...... +-+...|..++.+|.+.|+..+|.+.|+++.+ .|+.|+..|-
T Consensus 83 ---~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 83 ---ASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp ---HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred ---chHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 999999999987641 34778899999999999999999999999843 5999997663
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.36 E-value=0.0023 Score=45.36 Aligned_cols=117 Identities=16% Similarity=0.139 Sum_probs=78.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhC--CCC-CcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE--GLT-NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~--~~~-p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 139 (257)
......|++++|.+.|...... |-. ++. ..+.|-. ..-..+... ....+..+..++.+.|+++
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~--------~~~~w~~--~~r~~l~~~----~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLDDL--------RDFQFVE--PFATALVED----KVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--------TTSTTHH--HHHHHHHHH----HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccccccC--------cchHHHH--HHHHHHHHH----HHHHHHHHHHHHHHCCCch
Confidence 3456789999999999998873 211 110 0111111 111122221 3456777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH-----hCCCCCCHHH
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV-----GKGMRPNAGT 199 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~-----~~g~~p~~~~ 199 (257)
+|...++...+.. +-+...|..++.++.. .|+.++|.+.|+.+. +.|+.|...+
T Consensus 85 ~Al~~~~~al~~~-P~~e~~~~~l~~al~~-----~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 85 AVIAELEALTFEH-PYREPLWTQLITAYYL-----SDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHT-----TTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHhC-CccHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 8888888888763 5578888888888888 444888888888774 3588887655
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.30 E-value=0.0014 Score=43.34 Aligned_cols=102 Identities=12% Similarity=0.076 Sum_probs=73.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ---GKEALRVFMRMLASGVAPN-AYTYAVLIKGL 167 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~~~-~~t~~~ll~~~ 167 (257)
.+++.+...+++++|.+.|+...+.+ +.+..++..+-.++.+.++ +++|..+|++..+.+..|+ ..+|..+-.+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 47788888889999999999888753 2356777777777776554 4568999988876543333 23677777788
Q ss_pred HhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHH
Q 043311 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201 (257)
Q Consensus 168 ~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 201 (257)
.+.|+ +++|.+.|+...+ +.|+..-..
T Consensus 83 ~~~g~-----~~~A~~~~~~aL~--~~P~~~~A~ 109 (122)
T d1nzna_ 83 YRLKE-----YEKALKYVRGLLQ--TEPQNNQAK 109 (122)
T ss_dssp HHTTC-----HHHHHHHHHHHHH--HCTTCHHHH
T ss_pred HHHhh-----hHHHHHHHHHHHH--hCcCCHHHH
Confidence 88555 9999999998886 356654433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.14 E-value=0.014 Score=39.90 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=15.4
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 043311 95 DALSKDGLTHEALQLFAQIKD 115 (257)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~ 115 (257)
..+.+.|++..|...|.+..+
T Consensus 25 ~~~f~~~~y~~A~~~Y~~al~ 45 (153)
T d2fbna1 25 NEFFKKNEINEAIVKYKEALD 45 (153)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 456677888888888877664
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.012 Score=41.05 Aligned_cols=90 Identities=13% Similarity=0.054 Sum_probs=54.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCC-CC-------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 043311 95 DALSKDGLTHEALQLFAQIKDKGH-MP-------------DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160 (257)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~g~-~p-------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~ 160 (257)
..+.+.|++++|.+.|....+.-- .+ -..+|+.+-.+|.+.|++++|+..++...+.+ +-+...|
T Consensus 21 ~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~ 99 (170)
T d1p5qa1 21 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGL 99 (170)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhh
Confidence 356777788888877776654310 00 12345556666667777777777776666542 2356666
Q ss_pred HHHHHHHHhccCCcchhHHHHHHHHHHHHh
Q 043311 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 161 ~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
..+-.++...|+ ++.|...|+...+
T Consensus 100 ~~~g~~~~~~g~-----~~~A~~~~~~al~ 124 (170)
T d1p5qa1 100 SRRGEAHLAVND-----FELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHTTC-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh-----HHHHHHHHHHHHH
Confidence 666666666433 7777777776655
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.019 Score=43.77 Aligned_cols=158 Identities=13% Similarity=0.049 Sum_probs=74.7
Q ss_pred cccCCCCHHHHHHHHHHHHhCCCC-CcHH------HHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHH
Q 043311 64 VDEEPTDPRNLQEIFHKMRTEGLT-NNAV------KMFDALSKDGLTHEALQLFAQIKDK----GHMP-DVVAHTAVIEA 131 (257)
Q Consensus 64 ~~~~~~~~~~a~~~~~~m~~~~~~-p~~~------~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~ 131 (257)
.+...|++++|.+++++..+..-. +... .+-.+|...|++++|...|++..+. +..+ ....+..+-..
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 100 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 344566666666666665543211 1110 1334555566666666666655432 1111 12234444555
Q ss_pred HHhcCChHHHHHHHHHHHHCC----CC--CC-HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC----CCCCCHHHH
Q 043311 132 YASAGQGKEALRVFMRMLASG----VA--PN-AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK----GMRPNAGTY 200 (257)
Q Consensus 132 ~~~~~~~~~a~~~~~~m~~~g----~~--~~-~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~ 200 (257)
+...|++..+...+....... .. +. ...+..+-..+... |.++.+...++..... +.......+
T Consensus 101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 175 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW-----ARLDEAEASARSGIEVLSSYQPQQQLQCL 175 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHh-----cchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence 556666666666666665531 11 11 12333344444553 3366666655554421 111222334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 201 TAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
..+...+...++...+...+.+....
T Consensus 176 ~~~~~~~~~~~~~~~a~~~~~~a~~~ 201 (366)
T d1hz4a_ 176 AMLIQCSLARGDLDNARSQLNRLENL 201 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 44445555556666666666655544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.94 E-value=0.0026 Score=48.20 Aligned_cols=119 Identities=16% Similarity=0.139 Sum_probs=78.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhccCCcc
Q 043311 97 LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN-AYTYAVLIKGLAAAADGNA 175 (257)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~t~~~ll~~~~~~~~~~~ 175 (257)
..+.|++++|...|++..+.. +-|...+..+...|+..|++++|...|+...+. .|+ ...+..+-..+.. .
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a-----~ 77 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA-----A 77 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH-----H
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHh-----c
Confidence 456799999999999988752 346789999999999999999999999998875 444 3444333333322 1
Q ss_pred hhHHHHHHHHHHHHhCCC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 176 KILGDAQKYLMEMVGKGM--RP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 176 ~~~~~a~~~~~~m~~~g~--~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
+..++ .+.......+ .| +...+......+.+.|+.++|.+++++..+.
T Consensus 78 ~~~~~---a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 78 QARKD---FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHH---HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccHH---HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 11111 1111111111 12 2233444556677889999999999998764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.91 E-value=0.0015 Score=51.02 Aligned_cols=106 Identities=11% Similarity=-0.050 Sum_probs=67.6
Q ss_pred ccCCCCHHHHHHHHHHHHhCCCC-CcHH-HHHHHHHhc--CChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCChH
Q 043311 65 DEEPTDPRNLQEIFHKMRTEGLT-NNAV-KMFDALSKD--GLTHEALQLFAQIKDKGHMPDVVAHTAVI-EAYASAGQGK 139 (257)
Q Consensus 65 ~~~~~~~~~a~~~~~~m~~~~~~-p~~~-~ll~~~~~~--~~~~~a~~~~~~m~~~g~~p~~~~~~~li-~~~~~~~~~~ 139 (257)
....|.++++..+++...+.... +... .+..++... ++++++...+....+.. +++...|...+ ..+...+..+
T Consensus 83 ~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 83 EESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccH
Confidence 34455677888888887764321 1111 233344444 45788888888887642 23455555444 5566678889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
+|+..++...+.+. -+...|+.+-..+.+.|+
T Consensus 162 ~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~ 193 (334)
T d1dcea1 162 EELAFTDSLITRNF-SNYSSWHYRSCLLPQLHP 193 (334)
T ss_dssp HHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcC
Confidence 99998888877643 367777777777777665
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=96.89 E-value=0.024 Score=38.56 Aligned_cols=104 Identities=12% Similarity=0.014 Sum_probs=77.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHCC----CCCC-----------HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCC
Q 043311 130 EAYASAGQGKEALRVFMRMLASG----VAPN-----------AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194 (257)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~m~~~g----~~~~-----------~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~ 194 (257)
..+.+.|++++|...|.+....- ..++ ..+|+.+-..|.+.|+ +++|.+.++...+.. +
T Consensus 25 ~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~-----~~~Al~~~~~al~~~-p 98 (153)
T d2fbna1 25 NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD-----YPKAIDHASKVLKID-K 98 (153)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHS-T
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcc-----cchhhhhhhcccccc-c
Confidence 45678899999999998877531 1111 2467777778888544 999999999987642 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043311 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241 (257)
Q Consensus 195 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 241 (257)
-+...|..+-.++...|++++|...|++..+. .|+.......+..
T Consensus 99 ~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n~~~~~~l~~ 143 (153)
T d2fbna1 99 NNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYEL 143 (153)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 36789999999999999999999999998874 4654444444443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.79 E-value=0.017 Score=40.13 Aligned_cols=102 Identities=18% Similarity=0.114 Sum_probs=75.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCC-CCC-------------CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCC
Q 043311 129 IEAYASAGQGKEALRVFMRMLASG-VAP-------------NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194 (257)
Q Consensus 129 i~~~~~~~~~~~a~~~~~~m~~~g-~~~-------------~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~ 194 (257)
=..+.+.|++++|...|.+..+.. ..+ -..+|+.+-..|.+.|+ +++|...++..... .
T Consensus 20 G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~-----~~~A~~~~~~al~~--~ 92 (170)
T d1p5qa1 20 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA-----FSAAIESCNKALEL--D 92 (170)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHH--C
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhh-----cccccchhhhhhhc--c
Confidence 346888999999999998876531 111 13556677777888444 99999999988764 3
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043311 195 P-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239 (257)
Q Consensus 195 p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 239 (257)
| +...|.-+-.+|...|++++|...|++..+. .|+.......+
T Consensus 93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l 136 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQL 136 (170)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHH
T ss_pred ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 4 6778888999999999999999999999874 46433333333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.63 E-value=0.013 Score=38.69 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=31.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043311 95 DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150 (257)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 150 (257)
..+.+.|++++|.+.|.+..+.. +.+...|..+=.+|.+.|++++|...+++..+
T Consensus 12 ~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 12 NDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 45555666666666666555532 12345555556666666666666666655543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.58 E-value=0.022 Score=37.50 Aligned_cols=100 Identities=9% Similarity=0.066 Sum_probs=73.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh---CCCC--CC-HHHHH
Q 043311 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG---KGMR--PN-AGTYT 201 (257)
Q Consensus 128 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~---~g~~--p~-~~~~~ 201 (257)
+=..|.+.|++++|...|++..+.+ +.+...|..+-.+|.+.|+ ++.|...++...+ .... +. ..+|.
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~-----~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGD-----YNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCc-----hHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3456888899999999998888764 3468888888888888555 9999998888663 1111 11 24677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043311 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235 (257)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 235 (257)
.+-..+...+++++|.+.|+..... .++....
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 115 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVL 115 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc--CCCHHHH
Confidence 7888899999999999999887654 3454433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.44 E-value=0.13 Score=39.81 Aligned_cols=162 Identities=11% Similarity=0.065 Sum_probs=103.6
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEAL 142 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 142 (257)
..|.+.|.++.|..+|..+ .+...++..+.+.++++.|.+++.... +..+|..+..+|.+......+
T Consensus 22 ~~c~~~~lye~A~~lY~~~------~d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~e~~la- 88 (336)
T d1b89a_ 22 DRCYDEKMYDAAKLLYNNV------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLA- 88 (336)
T ss_dssp -------CTTTHHHHHHHT------TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHH-
T ss_pred HHHHHCCCHHHHHHHHHhC------CCHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCcHHHHH-
Confidence 6777999999999999854 345578899999999999888776432 577999999999988776543
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043311 143 RVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222 (257)
Q Consensus 143 ~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 222 (257)
.+...+...+......++..|-. .|.++....+++..... -..+...++-++..|++.+. .+ +.+.
T Consensus 89 ----~i~~~~~~~~~d~l~~~v~~ye~-----~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~k---l~e~ 154 (336)
T d1b89a_ 89 ----QMCGLHIVVHADELEELINYYQD-----RGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QK---MREH 154 (336)
T ss_dssp ----HHTTTTTTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HH---HHHH
T ss_pred ----HHHHHHhhcCHHHHHHHHHHHHH-----cCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HH---HHHH
Confidence 34444455677777788888888 44488888888876532 24567778889998988753 33 3334
Q ss_pred HHHCCCCCCHHHHHHHHHHhhcCCchhhHHhh
Q 043311 223 MKAKGFVPDEKAVKEALIDKRGQGFRGVINIL 254 (257)
Q Consensus 223 m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l 254 (257)
+....-.-| ...++..|...+.++.+.-+
T Consensus 155 l~~~s~~y~---~~k~~~~c~~~~l~~elv~L 183 (336)
T d1b89a_ 155 LELFWSRVN---IPKVLRAAEQAHLWAELVFL 183 (336)
T ss_dssp HHHHSTTSC---HHHHHHHHHTTTCHHHHHHH
T ss_pred HHhccccCC---HHHHHHHHHHcCChHHHHHH
Confidence 433211222 23344555555555444433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.41 E-value=0.041 Score=37.94 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=17.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 043311 93 MFDALSKDGLTHEALQLFAQIKD 115 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~ 115 (257)
.-..+.+.|+++.|++.|.+..+
T Consensus 33 ~~~~~~~~~~y~~Ai~~y~~al~ 55 (169)
T d1ihga1 33 IGNTFFKSQNWEMAIKKYTKVLR 55 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567788999999888877643
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=96.38 E-value=0.059 Score=37.08 Aligned_cols=90 Identities=11% Similarity=0.018 Sum_probs=52.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhC---CCCC-----------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 043311 95 DALSKDGLTHEALQLFAQIKDK---GHMP-----------DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160 (257)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~---g~~p-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~ 160 (257)
..+.+.|++++|.+.|...... .... ...+|+.+=.+|.+.|++++|+..++...+.+ +.+...|
T Consensus 23 ~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~ 101 (168)
T d1kt1a1 23 TVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGL 101 (168)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHH
Confidence 4566777777777777654421 1111 12234445555666777777777776666543 4456666
Q ss_pred HHHHHHHHhccCCcchhHHHHHHHHHHHHh
Q 043311 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 161 ~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
..+-.++...|+ +++|...|+...+
T Consensus 102 ~~~~~~~~~l~~-----~~~A~~~~~~al~ 126 (168)
T d1kt1a1 102 YRRGEAQLLMNE-----FESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHTTC-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-----HHHHHHHHHHHHH
Confidence 666666666443 7777777776665
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.35 E-value=0.017 Score=44.67 Aligned_cols=149 Identities=13% Similarity=-0.009 Sum_probs=82.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHH-HHHHH---HHHHH-------hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043311 99 KDGLTHEALQLFAQIKDKGHMPDVV-AHTAV---IEAYA-------SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167 (257)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l---i~~~~-------~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~ 167 (257)
+....++|.++++...+. .|+.. .|+.. +..+. ..|++++|+.+++...+.+ +-+...|..+..++
T Consensus 41 ~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~ 117 (334)
T d1dcea1 41 AGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (334)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHH
Confidence 333446777777777653 35433 34332 22222 2334667777777776543 33555666665555
Q ss_pred HhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 043311 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF-EAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246 (257)
Q Consensus 168 ~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 246 (257)
...+. +.++++...++...+.. +++...+...+ ..+...+.+++|...+++...... -+...|..+-..+...|
T Consensus 118 ~~~~~---~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~ 192 (334)
T d1dcea1 118 SRLPE---PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLH 192 (334)
T ss_dssp HTCSS---CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHS
T ss_pred HHhcc---ccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhc
Confidence 55332 22667777777665431 22344444333 445556777777777777665542 25566666666666666
Q ss_pred chhhHHhhh
Q 043311 247 FRGVINILF 255 (257)
Q Consensus 247 ~~~~~~~l~ 255 (257)
+.+.|...+
T Consensus 193 ~~~~A~~~~ 201 (334)
T d1dcea1 193 PQPDSGPQG 201 (334)
T ss_dssp CCCCSSSCC
T ss_pred CHHHHHHHH
Confidence 666554443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.25 E-value=0.084 Score=40.96 Aligned_cols=137 Identities=10% Similarity=0.031 Sum_probs=95.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043311 91 VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA 170 (257)
Q Consensus 91 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~ 170 (257)
..+.+.|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.... +..+|--+...|.+.
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~ 82 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDG 82 (336)
T ss_dssp -----------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhC
Confidence 358889999999999999998654 37888899999999999988886552 677999999999884
Q ss_pred cCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhh
Q 043311 171 ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250 (257)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 250 (257)
.. ...+ .+.......+......++..|-..|.+++...+++..... -..+...++.++..|++.+....
T Consensus 83 ~e-----~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~~kl 151 (336)
T d1b89a_ 83 KE-----FRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKPQKM 151 (336)
T ss_dssp TC-----HHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCHHHH
T ss_pred cH-----HHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhChHHH
Confidence 44 3222 2333344556677788999999999999999999987643 35677788889998888776554
Q ss_pred HHh
Q 043311 251 INI 253 (257)
Q Consensus 251 ~~~ 253 (257)
.+.
T Consensus 152 ~e~ 154 (336)
T d1b89a_ 152 REH 154 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.97 E-value=0.13 Score=35.23 Aligned_cols=103 Identities=11% Similarity=0.081 Sum_probs=73.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC--------------CCC-CCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCC
Q 043311 128 VIEAYASAGQGKEALRVFMRMLAS--------------GVA-PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192 (257)
Q Consensus 128 li~~~~~~~~~~~a~~~~~~m~~~--------------g~~-~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g 192 (257)
.-..+.+.|++++|...|.+..+. .+. .+...|..+-..+.+.|+ +++|...++...+..
T Consensus 33 ~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-----~~~Ai~~~~~al~~~ 107 (169)
T d1ihga1 33 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD-----WQGAVDSCLEALEID 107 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcc-----cchhhhhhhhhhhhh
Confidence 444567788888888888766431 011 234456667777778444 999999999988642
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 043311 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD-EKAVKEA 238 (257)
Q Consensus 193 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~l 238 (257)
+-+...|..+-.++.+.|++++|...|++..+. .|+ ......+
T Consensus 108 -p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--~p~n~~~~~~l 151 (169)
T d1ihga1 108 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAEL 151 (169)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred -hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 235678888999999999999999999999884 454 3344333
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.60 E-value=0.13 Score=34.41 Aligned_cols=120 Identities=15% Similarity=0.056 Sum_probs=71.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh----------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043311 98 SKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYAS----------AGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166 (257)
Q Consensus 98 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~----------~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~ 166 (257)
-+.+.+++|.+.|+...+. .| +...|..+=.+|.. .+.+++|...|++..+.+ +-+..+|..+-.+
T Consensus 8 ~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence 3445567777777766653 23 33444444444432 234577888888877653 3356777777776
Q ss_pred HHhccCC------cchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 043311 167 LAAAADG------NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228 (257)
Q Consensus 167 ~~~~~~~------~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 228 (257)
|...|.. ..+.++.|.+.|+...+ +.|+..+|..-+..+ ..+.+++.+..+.|+
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence 6654321 01346788888887765 467777776555544 456677777766654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=95.55 E-value=0.19 Score=34.27 Aligned_cols=95 Identities=11% Similarity=-0.083 Sum_probs=71.3
Q ss_pred ccccCCCCHHHHHHHHHHHHh---CCCCCcH--H------------HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRT---EGLTNNA--V------------KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~---~~~~p~~--~------------~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 125 (257)
..+.+.|++..|.+.|..... .....+. . .+-.+|.+.|++++|+..++...+.. +.+...|
T Consensus 23 ~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~ 101 (168)
T d1kt1a1 23 TVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGL 101 (168)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHH
Confidence 345678999999999987764 1111111 0 14457789999999999999988752 3467889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 043311 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160 (257)
Q Consensus 126 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~ 160 (257)
..+-.+|...|++++|...|.+..+. .|+....
T Consensus 102 ~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~~~ 134 (168)
T d1kt1a1 102 YRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAA 134 (168)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 99999999999999999999999875 4544333
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=95.28 E-value=0.0068 Score=45.74 Aligned_cols=116 Identities=16% Similarity=0.040 Sum_probs=73.8
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcC
Q 043311 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG-TYTAVFEAFVRAQ 211 (257)
Q Consensus 133 ~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~ 211 (257)
.+.|++++|...|++-.+.. +-|...+..+...++..|+ +++|.+.|+...+. .|+.. .+..+-..+...+
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~-----~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~ 78 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGD-----FERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQ 78 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhcc
Confidence 45799999999999999874 5588999999999999555 99999999998763 45543 3333333333222
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 212 KVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 212 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
..+++..-...-...+-.++...+......+...|+.+.|..+++
T Consensus 79 ~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~ 123 (264)
T d1zbpa1 79 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELAL 123 (264)
T ss_dssp HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 222221111110111112223344444556888999999988764
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=94.79 E-value=0.32 Score=32.59 Aligned_cols=111 Identities=19% Similarity=0.157 Sum_probs=71.0
Q ss_pred HHHHH--HHHHHhcCChHHHHHHHHHHHHCC-CCC----------CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh
Q 043311 124 AHTAV--IEAYASAGQGKEALRVFMRMLASG-VAP----------NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 124 ~~~~l--i~~~~~~~~~~~a~~~~~~m~~~g-~~~----------~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
+|..+ -..+...|++++|...|++-.+.. -.| ...+|+.+-.+|...|+ +++|.+.+++...
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~-----~~~A~~~~~~al~ 83 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS-----FDEALHSADKALH 83 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCc-----cchhhHhhhhhhh
Confidence 45554 334556788888888888776421 111 14678888888888555 8888877777553
Q ss_pred -----CCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 043311 191 -----KGMRPNA-----GTYTAVFEAFVRAQKVDEARGLLQQMKA-----KGFVPDEKAVKEAL 239 (257)
Q Consensus 191 -----~g~~p~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~t~~~ll 239 (257)
....++. ..|+.+-.+|...|++++|...|++..+ .|-.+....+...+
T Consensus 84 ~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~ 147 (156)
T d2hr2a1 84 YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 147 (156)
T ss_dssp HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred cccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHHH
Confidence 1122222 2456677889999999999999999764 24445555444443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.30 E-value=0.25 Score=30.10 Aligned_cols=70 Identities=14% Similarity=0.021 Sum_probs=50.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC-----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDK-----GHMPD-VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN-AYTYAVL 163 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~-----g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~t~~~l 163 (257)
.+-..+.+.|+++.|...|++..+. ...++ ..+++.+=.+|.+.|++++|...+++..+. .|+ ..+++.+
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--~P~~~~a~~Nl 86 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--CcCCHHHHHHH
Confidence 3566778889999998888876542 11222 467888888999999999999999998875 343 4444443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=93.18 E-value=0.71 Score=30.74 Aligned_cols=91 Identities=18% Similarity=0.090 Sum_probs=64.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC-CCCC----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCCH
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKG-HMPD----------VVAHTAVIEAYASAGQGKEALRVFMRMLAS-----GVAPNA 157 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g-~~p~----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~~~~~ 157 (257)
-..+.+.|++++|...|++..+-. -.|+ ...|+.+-.+|.+.|++++|..-+++..+. ...++.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 345667899999999999886521 1121 467888999999999999999999887642 122222
Q ss_pred -----HHHHHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 043311 158 -----YTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 158 -----~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
..|+.+-.+|...|+ +++|...|++..
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~-----~eeA~~~~~~Al 127 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGR-----GAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHH-----HHHHHHHHHHHH
Confidence 245566677788444 999999988765
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.80 E-value=0.4 Score=31.82 Aligned_cols=107 Identities=13% Similarity=0.011 Sum_probs=74.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCC-----cchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 043311 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG-----NAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFE 205 (257)
Q Consensus 132 ~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~-----~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~ 205 (257)
|-+.+.+++|...|+...+.. +-|...|..+=.++...++. ..+.+++|.+.|+...+- .| +..+|..+-.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHHhhHHH
Confidence 445567899999999988764 44667777666666543331 124578899999888753 45 4567777777
Q ss_pred HHHHcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 043311 206 AFVRAQ-----------KVDEARGLLQQMKAKGFVPDEKAVKEALIDKR 243 (257)
Q Consensus 206 ~~~~~~-----------~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 243 (257)
+|...| .+++|.+.|++..+ +.|+..++..-+..+.
T Consensus 84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~~ 130 (145)
T d1zu2a1 84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTA 130 (145)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHHH
Confidence 776554 36888888888876 5688777777666554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.57 E-value=0.63 Score=28.58 Aligned_cols=45 Identities=11% Similarity=0.153 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
++.+-++.+....+.|+.....+.+++|-+.+| +..|..+|+..+
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND-----~alAVR~lE~vK 68 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLND-----FASAVRILEVVK 68 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhh-----HHHHHHHHHHHH
Confidence 344444444444445555555555555554333 445555444444
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.80 E-value=0.53 Score=28.93 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=51.4
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043311 102 LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167 (257)
Q Consensus 102 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~ 167 (257)
+.-++.+-++.+......|++.+..+.+++|.+-+|+..|.++|+-.+.+ +.++...|..+++-.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqel 85 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 85 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Confidence 45567777778888888999999999999999999999999999888754 333456777776644
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=91.56 E-value=1.1 Score=29.11 Aligned_cols=129 Identities=10% Similarity=0.040 Sum_probs=70.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhccCCcchh
Q 043311 99 KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAADGNAKI 177 (257)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~t~~~ll~~~~~~~~~~~~~ 177 (257)
-.|.+++..++..+.... .+..-||=+|.-....-+-+..+++++..-+. ++. .+++
T Consensus 14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls-------------------~C~N 71 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD-------------------KCQN 71 (161)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG-------------------GCSC
T ss_pred HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch-------------------hhhc
Confidence 456677777776666553 35555666666666666666666666555331 111 1222
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 178 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
+......+-.+ .-+...++..++..++.|+-|...+++.++.+. -+|++.....+-.+|.+-|....+..++
T Consensus 72 lk~vv~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell 143 (161)
T d1wy6a1 72 LKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLL 143 (161)
T ss_dssp THHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence 34443333222 124555566666666666666666666665442 3555566666666666666666655554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.84 E-value=2.2 Score=34.40 Aligned_cols=112 Identities=8% Similarity=-0.128 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC-HHHH
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN-AGTY 200 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~ 200 (257)
...+..+-..+.+.|+.++|...+..-.+.. ...++..+-..+.. .+++++|...|++..+. .|+ ...|
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~-----~~~~~~A~~~y~~A~~l--~P~~~~~~ 189 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARY-----RNQTSQAESYYRHAAQL--VPSNGQPY 189 (497)
T ss_dssp -----------------------CCHHHHHH---HHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHH--CTTBSHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHH-----cccHHHHHHHHHHHHHH--CCCchHHH
Confidence 4455556666667777777766665543211 12455555555666 34488888888887653 454 4678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 043311 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244 (257)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 244 (257)
+.|-..+...|+..+|...|.+..... .|-..++..|...+.+
T Consensus 190 ~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 190 NQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 888888888888888888888887654 4666777777666544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.16 E-value=1.8 Score=27.79 Aligned_cols=74 Identities=9% Similarity=0.017 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 043311 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA-GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233 (257)
Q Consensus 155 ~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 233 (257)
++..|--....++++..+ ...+.++..+|+++...+ +.+. ..+--|--+|.+.|++++|.+.++.+.+ +.|+..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~--~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~ 107 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTD--VNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 107 (124)
T ss_dssp SCHHHHHHHHHHHHHSSC--HHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CCcchHHHHHHHHHcCCc--HHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcH
Confidence 455555555555665554 555777777777776532 1122 2333344567778888888888888776 345533
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=85.82 E-value=2.9 Score=26.63 Aligned_cols=86 Identities=9% Similarity=-0.018 Sum_probs=44.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cC
Q 043311 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR----AQ 211 (257)
Q Consensus 136 ~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~ 211 (257)
.+.++|+.+|++-.+.| +...+..|-..|.. |.......++|.++|+.-.+.| +......|-..|.. ..
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~-g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~ 109 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYEN-GKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK 109 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH-CSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhh-ccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCC
Confidence 45666777776666655 23333333333322 2212233667777777766654 23333333333433 24
Q ss_pred CHHHHHHHHHHHHHCCC
Q 043311 212 KVDEARGLLQQMKAKGF 228 (257)
Q Consensus 212 ~~~~a~~~~~~m~~~g~ 228 (257)
+..+|.++|++..+.|.
T Consensus 110 d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 110 NEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 66777777777666653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.27 E-value=2.5 Score=25.25 Aligned_cols=49 Identities=8% Similarity=0.022 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhC-----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 178 LGDAQKYLMEMVGK-----GMRPN-AGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 178 ~~~a~~~~~~m~~~-----g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
++.|...|++..+. ...++ ..+++.|-.++.+.|++++|...+++..+.
T Consensus 21 y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 21 YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 66666666654321 11122 345666777777777777777777777663
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.15 E-value=1 Score=36.45 Aligned_cols=107 Identities=14% Similarity=0.095 Sum_probs=67.9
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQGKEA 141 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a 141 (257)
..+.+.|+.+.|...+....+....-....+-+.+...|++++|...|....+. .|+ ...|+.|=..+...|+..+|
T Consensus 128 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A 205 (497)
T d1ya0a1 128 IISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTT 205 (497)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 566677777777766665544221111224677788899999999999988774 454 47899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 142 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
...|.+-.... .|-..++..|...+.+...
T Consensus 206 ~~~y~ral~~~-~~~~~a~~nL~~~~~~~~~ 235 (497)
T d1ya0a1 206 IFYYCRSIAVK-FPFPAASTNLQKALSKALE 235 (497)
T ss_dssp HHHHHHHHSSS-BCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCC-CCCHHHHHHHHHHHHHhhh
Confidence 99998887664 5678888888887766443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=83.21 E-value=4.2 Score=26.27 Aligned_cols=138 Identities=12% Similarity=-0.017 Sum_probs=80.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043311 68 PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147 (257)
Q Consensus 68 ~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 147 (257)
.|..++..++..+.....-....+=+|--....-+-+...++++...+. -|.. +++++......+-.
T Consensus 15 dG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDls----------~C~Nlk~vv~C~~~ 81 (161)
T d1wy6a1 15 DGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVVECGVI 81 (161)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhhh---cCch----------hhhcHHHHHHHHHH
Confidence 4666777777666665332222211333333444445555555555442 2221 23334443333322
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 043311 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227 (257)
Q Consensus 148 m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 227 (257)
+ .-+...+...++.... .|.-+.-.+++.++.+. -+|+....-.+-.+|-+.|...++-+++.+..+.|
T Consensus 82 ~-----n~~se~vdlALd~lv~-----~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 82 N-----NTLNEHVNKALDILVI-----QGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp T-----TCCCHHHHHHHHHHHH-----TTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred h-----cchHHHHHHHHHHHHH-----hccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 2 2234455666777777 44477777788886653 46777777788889999999999999999998888
Q ss_pred CC
Q 043311 228 FV 229 (257)
Q Consensus 228 ~~ 229 (257)
+.
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 64
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=82.90 E-value=6.2 Score=28.03 Aligned_cols=183 Identities=11% Similarity=-0.002 Sum_probs=88.2
Q ss_pred ccCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 043311 65 DEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS----AG 136 (257)
Q Consensus 65 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~ 136 (257)
+-+.+++++|.+.|+...+.|...-...|=..|.. ..+...+...+..-.+.+ +......+-..+.. ..
T Consensus 12 ~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~~~~~~~~~~~ 88 (265)
T d1ouva_ 12 SYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQ 88 (265)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred HHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccccccccccccch
Confidence 33467788888888877776643222233333333 345666666666655543 22222222222222 23
Q ss_pred ChHHHHHHHHHHHHCCCC---------------------------------CCHHHHHHHHHHHHhccCCcchhHHHHHH
Q 043311 137 QGKEALRVFMRMLASGVA---------------------------------PNAYTYAVLIKGLAAAADGNAKILGDAQK 183 (257)
Q Consensus 137 ~~~~a~~~~~~m~~~g~~---------------------------------~~~~t~~~ll~~~~~~~~~~~~~~~~a~~ 183 (257)
+.+.|...++.-...|.. .+...+..+-..+.... ........+..
T Consensus 89 ~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~-~~~~~~~~~~~ 167 (265)
T d1ouva_ 89 NTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGR-GTPKDLKKALA 167 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-SSCCCHHHHHH
T ss_pred hhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCC-Ccccccccchh
Confidence 445555555554443321 12223333333332211 11222444455
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----CCchhhHHhhh
Q 043311 184 YLMEMVGKGMRPNAGTYTAVFEAFVR----AQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG----QGFRGVINILF 255 (257)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~~~~l~ 255 (257)
.++...+.| +......+=..|.. ..+.++|...|++..+.| +...+..|-..|.. ..+.+.|.++|
T Consensus 168 ~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~ 241 (265)
T d1ouva_ 168 SYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENF 241 (265)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHH
T ss_pred hhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHH
Confidence 555444433 33333223223333 357888888888888877 23344444444432 33677777777
Q ss_pred cC
Q 043311 256 GK 257 (257)
Q Consensus 256 ~k 257 (257)
+|
T Consensus 242 ~k 243 (265)
T d1ouva_ 242 KK 243 (265)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: FUR-like domain: Ferric uptake regulation protein, FUR species: Pseudomonas aeruginosa [TaxId: 287]
Probab=81.09 E-value=2.5 Score=27.34 Aligned_cols=59 Identities=17% Similarity=0.282 Sum_probs=43.9
Q ss_pred HHHhCCCCCcHH--HHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043311 80 KMRTEGLTNNAV--KMFDALSKDG-LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG 138 (257)
Q Consensus 80 ~m~~~~~~p~~~--~ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 138 (257)
++.+.|+.++.. .++..+.+.+ ..-.|.++++.+.+.+...+..|--..|..+.+.|-+
T Consensus 6 ~Lr~~GlR~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~e~gli 67 (134)
T d1mzba_ 6 ELRKAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 67 (134)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhccEE
Confidence 467788887765 5778887764 4677888888888888888888777777777777754
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=80.59 E-value=5 Score=25.42 Aligned_cols=115 Identities=10% Similarity=0.037 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHH
Q 043311 69 TDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS----AGQGKEALRV 144 (257)
Q Consensus 69 ~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~ 144 (257)
.|+++|.+.|....+.|.......|.. ....+.++|.+.|+...+.| +...+..|=..|.. ..+.++|+++
T Consensus 7 kd~~~A~~~~~kaa~~g~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~ 81 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNEMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQY 81 (133)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCChhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHH
Confidence 478899999999998885554444432 33467889999999888876 44444444444443 4578999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCC
Q 043311 145 FMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192 (257)
Q Consensus 145 ~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g 192 (257)
|+.-.+.| +......|-..|.. |.+-..+.+.|.++|+.-.+.|
T Consensus 82 ~~~aa~~g---~~~a~~~Lg~~y~~-G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 82 YSKACGLN---DQDGCLILGYKQYA-GKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHH-TSSSCCCHHHHHHHHHHHHHTT
T ss_pred HhhhhccC---cchHHHHHHHHHHc-CCccCCCHHHHHHHHHHHHHCC
Confidence 99988876 33334444333333 2222344788888888776655
|