Citrus Sinensis ID: 043330

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
GSEASLPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKGNVVPNACKLPSPGINSAKKVNSPAKRMQRFIEASWKPSLKEP
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEcEEccccccEEEEccHHHHcccHHHHHHHHHcccccccHHHHHHHHHcccccccccHHHHHHHccccccccHHHcccccHHHHHHHHHHHHHcccccccEEEEEEEccEEcHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHcccccccccEEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEEEccccEEEccccEEEEcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHHHHHHHcccccccHcccccccHHHHEccccccccccHHEEEEEccccccc
Coil and Loop (DISEMBL)
gseaslpakpgnvnLSVYYEtlsptcsnfIVKNlegvfnndlISIInlrlvpwgdanisksnnacickhgpdecllNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTcfntlglpakpvldcyksgngtKLLLQHAYetshlipphtilpwvlVNNQAIRNDYENFTAYVCRAykgnvvpnacklpspginsakkvnspAKRMQRFIEAswkpslkep
Flexible Loop (DISEMBL)
gseaslpakpgnvNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKGNVVPNACKlpspginsakkvnspAKRMQRFieaswkpslkep
Low Complexity Region (SEG)
GSEASLPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKGNVVPNACKLPSPGINSAKKVNSPAKRMQRFIEASWKPSLKEP
Disordered region (IsUnstruct)
************VNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKGNVVPNACKL*********************************
Disordered Region (DISOPRED)
***********NVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPVLDCYK*GNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKGNVVPN************************FIEASWKPS****
Disordered Region (DISEMBL)
GSEASLPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKGNVVPNACKLPSPGINSA*********MQRFIEAS********
Disordered Region (DISPRO)
*********PGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKGNVVPNACKLPSPGINSAKKVNSPAKRMQRFIEASWKPS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GSEASLPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKGNVVPNACKLPSPGINSAKKVNSPAKRMQRFIEASWKPSLKEP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
A6QPN6	244	Gamma-interferon-inducibl	yes	no	0.804	0.741	0.338	2e-21
Q499T2	248	Gamma-interferon-inducibl	yes	no	0.764	0.693	0.338	5e-20
Q9ESY9	248	Gamma-interferon-inducibl	yes	no	0.808	0.733	0.321	2e-19
B3SP85	246	Gamma-interferon-inducibl	yes	no	0.782	0.715	0.328	7e-18
P13284	250	Gamma-interferon-inducibl	yes	no	0.808	0.728	0.291	4e-17
O17861	277	GILT-like protein F37H8.5	no	no	0.755	0.613	0.270	6e-12
P34276	323	GILT-like protein C02D5.2	no	no	0.764	0.532	0.264	7e-12
Q61Z40	220	GILT-like protein CBG0328	N/A	no	0.591	0.604	0.279	1e-10
Q23570	218	GILT-like protein ZK669.3	no	no	0.537	0.555	0.266	4e-09

>sp|A6QPN6|GILT_BOVIN Gamma-interferon-inducible lysosomal thiol reductase OS=Bos taurus GN=IFI30 PE=2 SV=1

 Score =  102 bits (254), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 107/195 (54%), Gaps = 14/195 (7%)

Query: 7   PAKPGN--VNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDA---NISKS 61
           P KP    VN+S+YYE L P C  F+++ L   +   ++ I+N+ LVP+G+A   N+S  
Sbjct: 48  PQKPDVPLVNVSLYYEALCPGCREFLIRELFPTWLM-VLEILNVTLVPYGNAQERNVSGK 106

Query: 62  NNACICKHGPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLG- 120
                C+HG  ECLLN+VEAC ++ L+    +   I C+E   ++   ++ + C      
Sbjct: 107 WEF-TCQHGERECLLNKVEACLLDQLEQKIAFLT-IVCLE--EMDDMEQNLKPCLQIYAP 162

Query: 121 -LPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCR 179
            + A  +++C     G +LL  +A  T  L PPH  +PWV+VN + ++ D E+    VCR
Sbjct: 163 KVSADSIMECATGNRGMQLLHINAQLTDALRPPHKYVPWVVVNGEHMK-DAEHLLHLVCR 221

Query: 180 AYKGNVVPNACKLPS 194
            Y+G   P+ C+L +
Sbjct: 222 LYQGQ-KPDVCQLTA 235

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.
Bos taurus (taxid: 9913)
EC: 1EC: .EC: 8EC: .EC: -EC: .EC: -

>sp|Q499T2|GILT_RAT Gamma-interferon-inducible lysosomal thiol reductase OS=Rattus norvegicus GN=Ifi30 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 11/183 (6%)

Query: 13  VNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDA---NISKSNNACICKH 69
           VN+S+YYE+L   C  F+V+NL   +   ++ I+N+ LVP+G+A   N+S +     C+H
Sbjct: 59  VNVSLYYESLCGACRYFLVRNLFPTWLM-VMEIMNITLVPYGNAQERNVSGTWEF-TCQH 116

Query: 70  GPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKP--VL 127
           G  EC LN+VEAC   +L  + K   F+  +    +E   K    C         P  ++
Sbjct: 117 GELECKLNKVEAC---LLDKLEKEAAFLTIVCMEEMEDMEKKLGPCLQLYVPEVSPESIM 173

Query: 128 DCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKGNVVP 187
           +C     GT+L+ ++A  T  L PPH  +PWVLVN + +  D     + VC  Y+G   P
Sbjct: 174 ECATGKRGTELMHENAQLTDALQPPHEYVPWVLVNEKPL-TDPSQLLSSVCELYQGTEKP 232

Query: 188 NAC 190
           + C
Sbjct: 233 DIC 235

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9ESY9|GILT_MOUSE Gamma-interferon-inducible lysosomal thiol reductase OS=Mus musculus GN=Ifi30 PE=1 SV=3

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 103/196 (52%), Gaps = 14/196 (7%)

Query: 13  VNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDA---NISKSNNACICKH 69
           V +S+YYE+L   C  F+V++L   +   ++ I+N+ LVP+G+A   N+S +     C+H
Sbjct: 59  VRVSLYYESLCGACRYFLVRDLFPTWLM-VMEIMNITLVPYGNAQERNVSGTWEF-TCQH 116

Query: 70  GPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKP--VL 127
           G  EC LN VEAC   +L  + K   F+  +    ++   K    C         P  ++
Sbjct: 117 GELECRLNMVEAC---LLDKLEKEAAFLTIVCMEEMDDMEKKLGPCLQVYAPEVSPESIM 173

Query: 128 DCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKGNVVP 187
           +C     GT+L+ ++A  T  L PPH  +PWVLVN + +++  E   + VC+ Y+G   P
Sbjct: 174 ECATGKRGTQLMHENAQLTDALHPPHEYVPWVLVNEKPLKDPSE-LLSIVCQLYQGTEKP 232

Query: 188 NACKLPSPGINSAKKV 203
           + C   S   +S +KV
Sbjct: 233 DIC---SSIADSPRKV 245

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|B3SP85|GILT_PIG Gamma-interferon-inducible-lysosomal thiol reductase OS=Sus scrofa GN=IFI30 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 102/192 (53%), Gaps = 16/192 (8%)

Query: 8   AKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLI--SIINLRLVPWGDA---NISKSN 62
           + P  VN+++YYE+L   C  F+V+ L   F   L+   I+N+ LVP+G+A   N+S   
Sbjct: 53  SDPPPVNVNLYYESLCNGCRYFLVREL---FPTWLMVWEILNVTLVPYGNAQERNVSGRW 109

Query: 63  NACICKHGPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLP 122
               C+HG  EC +N+VEAC ++ L+  N  +  I CIE L  +   K+ + C       
Sbjct: 110 EF-TCQHGEQECKMNKVEACLLDKLEK-NMAFLTIVCIEEL--DDMEKNLEPCLQIYAPK 165

Query: 123 AKP--VLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRA 180
             P  +++C     G +LL  +A  T  L PPH  +PWV+VN + +  + +     VC+ 
Sbjct: 166 VSPDSIMECAMGDRGMQLLHINAQLTDALKPPHEYVPWVVVNGKPM-TEKDQLLRLVCQL 224

Query: 181 YKGNVVPNACKL 192
           Y+G   P+ C++
Sbjct: 225 YEGE-KPDVCQI 235

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|P13284|GILT_HUMAN Gamma-interferon-inducible lysosomal thiol reductase OS=Homo sapiens GN=IFI30 PE=1 SV=3

 Score = 88.2 bits (217), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 96/192 (50%), Gaps = 10/192 (5%)

Query: 13  VNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNN--ACICKHG 70
           VN+++YYE L   C  F+++ L   +   ++ I+N+ LVP+G+A     +      C+HG
Sbjct: 62  VNVTLYYEALCGGCRAFLIRELFPTWLL-VMEILNVTLVPYGNAQEQNVSGRWEFKCQHG 120

Query: 71  PDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTL--GLPAKPVLD 128
            +EC  N+VEAC ++ L ++   +  I C+E    E   +    C      GL    +++
Sbjct: 121 EEECKFNKVEACVLDEL-DMELAFLTIVCME--EFEDMERSLPLCLQLYAPGLSPDTIME 177

Query: 129 CYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKGNVVPN 188
           C     G +L+  +A  T  L PPH  +PWV VN + + +  +  T  VC+ Y+G   P+
Sbjct: 178 CAMGDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPLEDQTQLLT-LVCQLYQGK-KPD 235

Query: 189 ACKLPSPGINSA 200
            C   +  + S 
Sbjct: 236 VCPSSTSSLRSV 247

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds (By similarity). Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|O17861|YVRI_CAEEL GILT-like protein F37H8.5 OS=Caenorhabditis elegans GN=F37H8.5 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 87/181 (48%), Gaps = 11/181 (6%)

Query: 13  VNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPD 72
           +N++V  E L P C NF+ K L  +   +  + +N+ LVP+G+A + + +    C+HG +
Sbjct: 76  INITVLIEALCPDCQNFLTKQLYPIVFKNFANYVNIELVPFGNAKVLE-DGTIKCQHGEE 134

Query: 73  ECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDW-QTCFNTL---GLPAKPVLD 128
           EC +N+ E C I+ +++ +         E L  +    D  Q CF  L   G   +    
Sbjct: 135 ECSINKFEGCFIDSMQDQSPLPTLSCIEESLQKKVEFADAVQQCFEKLQIGGDIQRLTQS 194

Query: 129 CYKSGNGTKLLLQHAYETSHLIP-PHTILPWVLVNNQAIRNDYENFT----AYVCRAYKG 183
           C  S  G  L  + A  T+++ P  H  +PWV++N  ++   ++ F       +C  Y G
Sbjct: 195 CLVSKLGADLQNKAAAATANVWPEQHKFVPWVIINGVSL-TSFQGFQNQLPTLLCEWYSG 253

Query: 184 N 184
           +
Sbjct: 254 D 254

Caenorhabditis elegans (taxid: 6239)

>sp|P34276|YKJ2_CAEEL GILT-like protein C02D5.2 OS=Caenorhabditis elegans GN=C02D5.2 PE=3 SV=1

 Score = 70.9 bits (172), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 88/185 (47%), Gaps = 13/185 (7%)

Query: 13  VNLSVYYETLSPTCSNFIVKNLEGVFNN-DLISIINLRLVPWGDANISKSNN--ACICKH 69
           V L VY E   P  S F  + L+  ++    ++ I L ++P+G A  ++  N   C C+H
Sbjct: 139 VKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIPFGKARCTEKGNDFECQCQH 198

Query: 70  GPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHK-DWQTCFNTLGLPA--KPV 126
           GP EC +N++  C I+     ++Y   + C     ++G++  D      T   P+  + +
Sbjct: 199 GPTECQINQLMNCVIDRFGFPHRYLPGVLC-----MQGKYSLDEAMKCVTENYPSEYERM 253

Query: 127 LDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKGNVV 186
            +C     G +LL     +T+ L P    +PW+++N     +   + T  VC A +   +
Sbjct: 254 RECASGTRGRRLLALSGQKTASLTPAIDFIPWIVINGSRNSDALYDLTQNVCEAMQP--M 311

Query: 187 PNACK 191
           P+ACK
Sbjct: 312 PSACK 316

Caenorhabditis elegans (taxid: 6239)

>sp|Q61Z40|YO30_CAEBR GILT-like protein CBG03282 OS=Caenorhabditis briggsae GN=CBG03282 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 10/143 (6%)

Query: 46  INLRLVPWG------DANISKSNNACICKHGPDECLLNEVEACAINVLKNVNKYYGFIYC 99
           IN    P+G      D++ S  +  C C HG  ECLLN+++AC I  L N  +Y   + C
Sbjct: 67  INFEYHPYGIKTTCVDSD-SGDDVVCECHHGARECLLNQLQACVIEALPNFEEYMEVVTC 125

Query: 100 IEFLAIEGRHKDWQTCFNT-LGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPW 158
           I+    +      + CFN    L    ++ C  S +G KL   H    + + P     PW
Sbjct: 126 IQ--GKQNISMAAEACFNEPSKLERAKMMSCADSRHGRKLFSDHENFVAQMAPEMDWAPW 183

Query: 159 VLVNNQAIRNDYENFTAYVCRAY 181
           +L+N +  +   E+   ++C  +
Sbjct: 184 ILINGKRYKEAEEDLWQFLCDRF 206

Caenorhabditis briggsae (taxid: 6238)

>sp|Q23570|YO30_CAEEL GILT-like protein ZK669.3 OS=Caenorhabditis elegans GN=ZK669.3 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 3/124 (2%)

Query: 59  SKSNNACICKHGPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNT 118
           S  +  C C HG  ECLLN+++AC I  L N   Y   + CI+    +      + CF  
Sbjct: 83  SADDVVCDCHHGNRECLLNQLQACVIEALPNFEDYMEVVTCIQ--GKQNISMAAEVCFEG 140

Query: 119 -LGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYV 177
              L    +++C +S +G KL        + + P     PW+L+N    +   E+   ++
Sbjct: 141 PTKLDRTKMMECAESRHGRKLFSDQENIVAQMAPEMDWAPWILINGTRYKEAEEDLWQFL 200

Query: 178 CRAY 181
           C  +
Sbjct: 201 CDRF 204

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
255571431	271	Gamma-interferon-inducible lysosomal thi	0.96	0.797	0.579	8e-69
224087794	260	predicted protein [Populus trichocarpa]	0.844	0.730	0.607	3e-67
224139222	226	predicted protein [Populus trichocarpa]	0.795	0.792	0.575	1e-63
356523348	219	PREDICTED: LOW QUALITY PROTEIN: gamma-in	0.786	0.808	0.598	7e-59
351721061	229	uncharacterized protein LOC100306044 pre	0.773	0.759	0.587	1e-55
225439464	261	PREDICTED: gamma-interferon-inducible ly	0.857	0.739	0.523	7e-54
147859355	261	hypothetical protein VITISV_043667 [Viti	0.857	0.739	0.523	8e-54
297735627	317	unnamed protein product [Vitis vinifera]	0.857	0.608	0.523	9e-54
357468575	224	Gamma-interferon-inducible lysosomal thi	0.826	0.830	0.529	1e-52
356496241	263	PREDICTED: gamma-interferon-inducible ly	0.848	0.726	0.510	2e-52

>gi|255571431|ref|XP_002526663.1| Gamma-interferon-inducible lysosomal thiol reductase precursor, putative [Ricinus communis] gi|223533963|gb|EEF35685.1| Gamma-interferon-inducible lysosomal thiol reductase precursor, putative [Ricinus communis]

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 128/221 (57%), Positives = 163/221 (73%), Gaps = 5/221 (2%)

Query: 3   EASLPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSN 62
           +  L      VNLSVYYE L P+C++FIV+NL  +FNN LI IINLR++PWG+A++++ N
Sbjct: 34  QDGLSKNAAKVNLSVYYEALCPSCADFIVRNLMTIFNNGLIDIINLRMIPWGNAHVNRVN 93

Query: 63  NACICKHGPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLP 122
           N  +C++G DEC LN ++ACAINV  NVNKYY  IYCIEFLAIEGRH++W TCF++LGL 
Sbjct: 94  NTMVCQNGLDECELNTIQACAINVWNNVNKYYALIYCIEFLAIEGRHRNWLTCFSSLGLS 153

Query: 123 AKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYK 182
            KPV++CYK+GNGTKL + + YET+HL PP T +PWVLVNNQ +  DY+NFTAYVC AYK
Sbjct: 154 KKPVMECYKNGNGTKLDVVYGYETTHLKPPQTFVPWVLVNNQPLGTDYKNFTAYVCNAYK 213

Query: 183 GNVVPNACKLPSPGINSAKKVNSPAKRMQRFIEASWKPSLK 223
           G+ VP AC +P   I+S K  N       R IEA    SL+
Sbjct: 214 GDPVPTACIMPK--ISSVKGANPVC---YRGIEAMSMTSLR 249

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087794|ref|XP_002308232.1| predicted protein [Populus trichocarpa] gi|222854208|gb|EEE91755.1| predicted protein [Populus trichocarpa]

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 116/191 (60%), Positives = 156/191 (81%), Gaps = 1/191 (0%)

Query: 13  VNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPD 72
           VNLSVYYE L P+C+NFIV++L  VFN+DLI+IINLR+VPWG+A+++K+++  IC++G D
Sbjct: 45  VNLSVYYEALCPSCANFIVQSLARVFNDDLINIINLRMVPWGNAHVNKTDSTIICQNGLD 104

Query: 73  ECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPVLDCYKS 132
           EC+LN ++ACAINV  +VNKYY  IYCIEFL IEGRH +WQ+CF++LGLP KP+LDCY +
Sbjct: 105 ECVLNTIQACAINVWHDVNKYYALIYCIEFLTIEGRHSNWQSCFSSLGLPEKPILDCYNN 164

Query: 133 GNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKGNVVPNACK- 191
           G G KL   + YET+HL PP T +PWV+V+++ + NDYE FT Y+C AYK NV+PNACK 
Sbjct: 165 GTGAKLQALYGYETAHLSPPQTFVPWVVVDSKQLGNDYEKFTTYICNAYKSNVIPNACKS 224

Query: 192 LPSPGINSAKK 202
           LP   ++S+K+
Sbjct: 225 LPPNNVSSSKE 235

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139222|ref|XP_002323010.1| predicted protein [Populus trichocarpa] gi|222867640|gb|EEF04771.1| predicted protein [Populus trichocarpa]

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 103/179 (57%), Positives = 145/179 (81%)

Query: 13  VNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPD 72
           VNLSVYYE LSP+C+ FI++NL GVF++DLI+I NLR+VPWG+A++++++N  IC++G D
Sbjct: 45  VNLSVYYEALSPSCATFIIQNLTGVFDDDLITITNLRMVPWGNAHVNETDNTIICQNGRD 104

Query: 73  ECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPVLDCYKS 132
           EC L++++ACAINV  +V+KYY  I+C+EFL I+G H DWQ+CFN+LGL  +P+L+CY +
Sbjct: 105 ECFLHKIQACAINVWNDVDKYYALIHCMEFLVIDGTHSDWQSCFNSLGLSEEPILECYNN 164

Query: 133 GNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKGNVVPNACK 191
           G G KL   + YET+HL PPH  +PWV+VNN+++  DY +FT Y+C AY+G V PNACK
Sbjct: 165 GTGAKLQALYGYETAHLDPPHVFMPWVVVNNKSLGKDYGDFTTYICSAYEGKVKPNACK 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523348|ref|XP_003530302.1| PREDICTED: LOW QUALITY PROTEIN: gamma-interferon-inducible lysosomal thiol reductase-like [Glycine max]

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 106/177 (59%), Positives = 136/177 (76%)

Query: 7   PAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACI 66
           P     VNLSVYY +LS  C+ FIVKNLE +F++DLI+I+NL+LVPW +A + K+N++ I
Sbjct: 31  PFASQKVNLSVYYASLSQPCATFIVKNLEEIFHSDLINILNLQLVPWANAYVDKTNHSII 90

Query: 67  CKHGPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPV 126
           C++GPDEC LN +EACA+NVL +VNK+Y  IYC EFLAIEGRHK+WQ CF+ L LP +P+
Sbjct: 91  CQNGPDECELNSLEACALNVLDDVNKHYALIYCFEFLAIEGRHKNWQDCFSQLDLPLEPI 150

Query: 127 LDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKG 183
           L CY  GNGT+L  ++  ET+    PH  LPWV+VNNQ+I  +YENFT YVC AYKG
Sbjct: 151 LSCYNRGNGTELGQKYINETTLFYTPHEFLPWVVVNNQSIGKEYENFTRYVCEAYKG 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721061|ref|NP_001236685.1| uncharacterized protein LOC100306044 precursor [Glycine max] gi|255627371|gb|ACU14030.1| unknown [Glycine max]

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/177 (58%), Positives = 133/177 (75%), Gaps = 3/177 (1%)

Query: 7   PAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACI 66
           P     VNLSVYY +LS  C+ FIVKNLE +F++DLI+I+NL+LVPW +A + K+N++  
Sbjct: 44  PFASQKVNLSVYYASLSQPCATFIVKNLEEIFHSDLINIVNLQLVPWANAYVDKTNHSI- 102

Query: 67  CKHGPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPV 126
             +GPDEC LN +EACA+NVL +VNK+Y  IYC EFLAIEGRHK+WQ CF+ L LP +P+
Sbjct: 103 --NGPDECELNSLEACALNVLNDVNKHYALIYCFEFLAIEGRHKNWQDCFSQLDLPEEPI 160

Query: 127 LDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKG 183
           L CY  GNGT+L  +   ET+ L  PH  LPWV+VNNQ+I  +YENF+ YVC AYKG
Sbjct: 161 LSCYNRGNGTELGQKSINETALLYAPHEFLPWVMVNNQSIGKEYENFSRYVCEAYKG 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439464|ref|XP_002267105.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase [Vitis vinifera]

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 102/195 (52%), Positives = 138/195 (70%), Gaps = 2/195 (1%)

Query: 10  PGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKH 69
           P  V LSVYYETL P CSNFIV++L  +F N LISI+NLR++PWG+A + + +    C+H
Sbjct: 43  PNRVTLSVYYETLCPYCSNFIVRDLLKIFENGLISIVNLRMIPWGNA-VLRPDKTFQCQH 101

Query: 70  GPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPVLDC 129
           GP EC+LN VEAC IN+   V+ ++ FIYC+E+LA+EG+  +W +CF+   L   P+ DC
Sbjct: 102 GPAECVLNTVEACVINIYPRVDMHFRFIYCVEYLALEGKQAEWASCFDRSQLGKVPI-DC 160

Query: 130 YKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKGNVVPNA 189
           Y SG G +L L++A ET+ L PPHT +PWV+VN+Q ++ DY NF AYVCRAY+G  VP A
Sbjct: 161 YTSGYGNQLELKYAEETALLNPPHTGVPWVVVNDQPLKEDYNNFVAYVCRAYRGGNVPEA 220

Query: 190 CKLPSPGINSAKKVN 204
           C+     INS  + N
Sbjct: 221 CRSFQLNINSTVEEN 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147859355|emb|CAN83947.1| hypothetical protein VITISV_043667 [Vitis vinifera]

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 102/195 (52%), Positives = 138/195 (70%), Gaps = 2/195 (1%)

Query: 10  PGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKH 69
           P  V LSVYYETL P CSNFIV++L  +F N LISI+NLR++PWG+A + + +    C+H
Sbjct: 43  PNRVTLSVYYETLCPYCSNFIVRDLLKIFENGLISIVNLRMIPWGNA-VLRPDKTFQCQH 101

Query: 70  GPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPVLDC 129
           GP EC+LN VEAC IN+   V+ ++ FIYC+E+LA+EG+  +W +CF+   L   P+ DC
Sbjct: 102 GPAECVLNTVEACVINIYPRVDMHFRFIYCVEYLALEGKQAEWASCFDRSQLGKVPI-DC 160

Query: 130 YKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKGNVVPNA 189
           Y SG G +L L++A ET+ L PPHT +PWV+VN+Q ++ DY NF AYVCRAY+G  VP A
Sbjct: 161 YTSGYGNQLELKYAEETALLNPPHTGVPWVVVNDQPLKEDYNNFVAYVCRAYRGGNVPEA 220

Query: 190 CKLPSPGINSAKKVN 204
           C+     INS  + N
Sbjct: 221 CRSFQLNINSTVEEN 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735627|emb|CBI18121.3| unnamed protein product [Vitis vinifera]

 Score =  215 bits (548), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 102/195 (52%), Positives = 138/195 (70%), Gaps = 2/195 (1%)

Query: 10  PGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKH 69
           P  V LSVYYETL P CSNFIV++L  +F N LISI+NLR++PWG+A + + +    C+H
Sbjct: 99  PNRVTLSVYYETLCPYCSNFIVRDLLKIFENGLISIVNLRMIPWGNA-VLRPDKTFQCQH 157

Query: 70  GPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPVLDC 129
           GP EC+LN VEAC IN+   V+ ++ FIYC+E+LA+EG+  +W +CF+   L   P+ DC
Sbjct: 158 GPAECVLNTVEACVINIYPRVDMHFRFIYCVEYLALEGKQAEWASCFDRSQLGKVPI-DC 216

Query: 130 YKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKGNVVPNA 189
           Y SG G +L L++A ET+ L PPHT +PWV+VN+Q ++ DY NF AYVCRAY+G  VP A
Sbjct: 217 YTSGYGNQLELKYAEETALLNPPHTGVPWVVVNDQPLKEDYNNFVAYVCRAYRGGNVPEA 276

Query: 190 CKLPSPGINSAKKVN 204
           C+     INS  + N
Sbjct: 277 CRSFQLNINSTVEEN 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468575|ref|XP_003604572.1| Gamma-interferon-inducible lysosomal thiol reductase [Medicago truncatula] gi|355505627|gb|AES86769.1| Gamma-interferon-inducible lysosomal thiol reductase [Medicago truncatula]

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/187 (52%), Positives = 134/187 (71%), Gaps = 1/187 (0%)

Query: 7   PAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACI 66
           P     VNLSVYYE+LS + + FIVKNL  +FNNDLI I+NL+LVPW +++++++NNA  
Sbjct: 37  PVDYEKVNLSVYYESLSNSSAVFIVKNLREIFNNDLIDIVNLQLVPWANSHVNQTNNAIS 96

Query: 67  CKHGPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQ-TCFNTLGLPAKP 125
           C++GPDEC LN + ACA+N+  NV+++Y  I C EFLAIE   K WQ  C   LGLP +P
Sbjct: 97  CQNGPDECELNSLAACALNIWPNVDEHYSLINCFEFLAIERNIKMWQDDCLKQLGLPLEP 156

Query: 126 VLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKGNV 185
            ++C+  GNGT+   ++  ET+ L PPH+ +PWV+VNNQ I  DYENFT YVC+AYKG  
Sbjct: 157 FMNCFNRGNGTEFGQKYIDETAKLDPPHSFVPWVVVNNQPIEKDYENFTDYVCKAYKGAA 216

Query: 186 VPNACKL 192
           +P  C +
Sbjct: 217 IPAVCNV 223

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496241|ref|XP_003516977.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Glycine max]

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 99/194 (51%), Positives = 137/194 (70%), Gaps = 3/194 (1%)

Query: 13  VNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPD 72
           V LS+YYE+L P  ++FIV +L  +F   LISI+NLRLVPWG+A I+  +   +C+HG D
Sbjct: 44  VTLSLYYESLCPYRADFIVNHLVRLFQTGLISILNLRLVPWGNARIAP-DGTVVCQHGDD 102

Query: 73  ECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPVLDCYKS 132
           EC LN +EACAI +  +V +++ F+ C+E L +EGRH  W  CF   GL   P+ DCY +
Sbjct: 103 ECFLNTIEACAITIYPDVVQHFRFVRCLERLTLEGRHNQWVNCFQMTGLGTSPI-DCYTN 161

Query: 133 GNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKGNVVPNACK- 191
           GNG  +  ++A ET+ L PPH  +PWV+VNNQA++ DY+NF  Y+CRAYKGNV+PNAC+ 
Sbjct: 162 GNGKAIDQKYAKETAQLNPPHRFVPWVVVNNQALQEDYQNFVTYICRAYKGNVIPNACRS 221

Query: 192 LPSPGINSAKKVNS 205
           L +   +S +KVNS
Sbjct: 222 LSTRTYDSNEKVNS 235

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
TAIR|locus:2007407	265	AT1G07080 "AT1G07080" [Arabido	0.911	0.773	0.468	4e-51
TAIR|locus:2149730	233	OSH1 "AT5G01580" [Arabidopsis	0.871	0.841	0.429	5.6e-45
TAIR|locus:2135813	232	AT4G12890 "AT4G12890" [Arabido	0.755	0.732	0.418	3.6e-34
TAIR|locus:2135783	229	AT4G12870 "AT4G12870" [Arabido	0.813	0.799	0.391	2.9e-32
TAIR|locus:2123286	231	AT4G12900 "AT4G12900" [Arabido	0.76	0.740	0.379	3.3e-31
TAIR|locus:2123251	243	GILT "AT4G12960" [Arabidopsis	0.835	0.773	0.348	9.1e-29
UNIPROTKB|A6QPN6	244	IFI30 "Gamma-interferon-induci	0.808	0.745	0.340	1.8e-23
UNIPROTKB|F1MAU3	244	IFI30 "Gamma-interferon-induci	0.808	0.745	0.340	1.8e-23
UNIPROTKB|F1PK63	251	IFI30 "Uncharacterized protein	0.804	0.721	0.346	2.1e-22
RGD|1310758	248	Ifi30 "interferon gamma induci	0.808	0.733	0.338	2.1e-22

TAIR|locus:2007407 AT1G07080 "AT1G07080" [Arabidopsis thaliana (taxid:3702)]

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 97/207 (46%), Positives = 135/207 (65%)

Query:     2 SEASLPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKS 61
             S  SLP+    V++ +YYE+L P CS+FIV +L  +F +DLISI++L L PWG+  +   
Sbjct:    28 SGVSLPSSSPKVSVGLYYESLCPYCSSFIVNHLAKLFEDDLISIVDLHLSPWGNTKLRSD 87

Query:    62 NNACICKHGPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGL 121
             N   +C+HG  EC L+ VEACAI+    V+ ++ FIYC+E L  E ++  W+TC+  L L
Sbjct:    88 NVTAVCQHGAFECFLDTVEACAIDAWPKVSDHFPFIYCVEKLVTEHKYDKWETCYEKLNL 147

Query:   122 PAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAY 181
              +KPV DC  SG+G +L L +A ET+ L PPH  +PWV+V+ Q +  DYENF +Y+C+AY
Sbjct:   148 NSKPVADCLSSGHGNELALHYAAETNALQPPHKYVPWVVVDGQPLYEDYENFISYICKAY 207

Query:   182 KGNVVPNACKLPSPG--INSAKKVNSP 206
             KGN VP AC   + G  I S K   SP
Sbjct:   208 KGNKVPGACTKYATGNFIRSVKLKRSP 234

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2149730 OSH1 "AT5G01580" [Arabidopsis thaliana (taxid:3702)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 85/198 (42%), Positives = 126/198 (63%)

Query:    13 VNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPD 72
             V LS+YYE L P C+ FIV  L  +F   LIS I+L+LVPWG+A I + +   +C+HG  
Sbjct:    27 VTLSLYYEALCPFCAEFIVNRLPKIFETGLISSIDLQLVPWGNAAI-RPDGTILCQHGEA 85

Query:    73 ECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPVLDCYKS 132
             EC LN + ACAIN   +V K++G+IYC E L +E + + W  C   +GL ++  +DCY +
Sbjct:    86 ECALNAIHACAINAYPDVMKHFGYIYCTEQLVLENKLEKWADCLEMVGL-SRAAVDCYIN 144

Query:   133 GNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKGNVVPNACKL 192
             G G +L  ++A ETS L P H  +PWV+VNN  ++ +Y+NF  YVC AY  N VP AC++
Sbjct:   145 GYGNQLEQRYAEETSELYPAHRFVPWVVVNNLPLQENYQNFVMYVCNAYGSNQVPEACRI 204

Query:   193 PSPGINSAKKVNSPAKRM 210
              +  + +  + NS  +++
Sbjct:   205 LNSSVETLSRSNSSVEKL 222

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2135813 AT4G12890 "AT4G12890" [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 75/179 (41%), Positives = 108/179 (60%)

Query:    13 VNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACI-CKHGP 71
             V +++YYE+L P C NFIV +L  +F++DL+ I +L+LVP+G+A+IS  NN  I C+HG 
Sbjct:    39 VKINLYYESLCPYCQNFIVDDLGKIFDSDLLKITDLKLVPFGNAHIS--NNLTITCQHGE 96

Query:    72 DECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPVLDCYK 131
             +EC LN +EAC I  L +    Y FI C+E         +W++C    G   K + DCY 
Sbjct:    97 EECKLNALEACGIRTLPDPKLQYKFIRCVE-----KDTNEWESCVKKSGRE-KAINDCYN 150

Query:   132 SGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKGNVVPNAC 190
                  KL+L +A  TS L P H  +PWV +N + + ++Y N  A VC+AYKG  +P  C
Sbjct:   151 GDLSQKLILGYAKLTSSLKPKHEYVPWVTLNGKPLYDNYHNLVAQVCKAYKGKDLPKLC 209

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2135783 AT4G12870 "AT4G12870" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 76/194 (39%), Positives = 111/194 (57%)

Query:    13 VNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPD 72
             V L++YYE+L P C +FIV  L  VF++DL +I +++LVP+G A +S +N   IC+HG +
Sbjct:    33 VELNLYYESLCPGCQSFIVDELVKVFDSDLDTITDVKLVPFGYAKVS-NNLTVICQHGEE 91

Query:    73 ECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQT-CFNTLGLPAKPVLDCYK 131
             EC LN +EAC IN L N    Y FI C+E         +W++ C    G   K + DCY 
Sbjct:    92 ECKLNALEACVINTLPNPKSQYKFIRCVE-----NNTDNWESSCLKGYG-NEKAINDCYN 145

Query:   132 SGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKGNV-VPNAC 190
             S    KL+L +A +TS L P H  +PWV +N++ +    ++    VC+AYKG   +P  C
Sbjct:   146 SDLSKKLILGYAKQTSSLKPKHEFVPWVTINSKPLYTKLDDLVGQVCKAYKGKTPLPIDC 205

Query:   191 KLPSPGINSAKKVN 204
                S  ++  K  N
Sbjct:   206 S--SAALSERKMSN 217

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2123286 AT4G12900 "AT4G12900" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 68/179 (37%), Positives = 104/179 (58%)

Query:    13 VNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPD 72
             V L++YYE+L P+C NFIV +L  +FN DL +I +L+L+P+G+A++S  +    C+HG +
Sbjct:    37 VKLNLYYESLCPSCQNFIVHHLGKIFNTDLHTITDLKLIPFGNAHVS-DDLTVTCQHGEE 95

Query:    73 ECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPVLDCYKS 132
             EC LN +EACAI    N   +Y FI C+E          W++C    G   K + DCY  
Sbjct:    96 ECKLNALEACAIRTWPNQRLHYKFIRCVET-----NTNAWESCVKKYG-GEKAINDCYNG 149

Query:   133 GNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKGNV-VPNAC 190
                 +L+L +A +T  L P H  +PW+ +N + +  +  +F   VC+AYKG   +P  C
Sbjct:   150 DLSKELILGYANQTLSLKPEHKYVPWMTLNGEPLYENIGDFVDLVCKAYKGKAALPKLC 208

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2123251 GILT "AT4G12960" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 75/215 (34%), Positives = 112/215 (52%)

Query:     9 KPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICK 68
             K G V L++YYE+L P C  FIV +L  +F+ DL +I +L+L P+G+A +S  N    C+
Sbjct:    28 KSGKVKLNLYYESLCPGCQEFIVDDLGKIFDYDLYTITDLKLFPFGNAELS-DNLTVTCQ 86

Query:    69 HGPDECLLNEVEACAINV----LKNVNKY------YGFIYCIEFLAIEGRHKDWQTCFNT 118
             HG +EC LN +EACA+          + Y      Y FI C+E        K W++C   
Sbjct:    87 HGEEECKLNALEACALRTWPDQFDKCDGYGTQKSQYSFIRCVE-----SDTKGWESCVKN 141

Query:   119 LGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYEN---FTA 175
              G   K + DCY      KL+L +A +T +L PPH  +PWV +N + + +  ++     A
Sbjct:   142 SGRE-KAINDCYNGDLSRKLILGYATKTKNLKPPHEYVPWVTLNGKPLDDSVQSTDDLVA 200

Query:   176 YVCRAYKGNV-VPNACKLPSPGINSAKKVNSPAKR 209
              +C AYKG   +P  C       +SA    SP ++
Sbjct:   201 QICNAYKGKTTLPKVCN------SSASMSKSPERK 229

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|A6QPN6 IFI30 "Gamma-interferon-inducible lysosomal thiol reductase" [Bos taurus (taxid:9913)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 67/197 (34%), Positives = 109/197 (55%)

Query:     3 EASLPAKPGN--VNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDA---N 57
             +AS P KP    VN+S+YYE L P C  F+++ L   +   ++ I+N+ LVP+G+A   N
Sbjct:    45 QAS-PQKPDVPLVNVSLYYEALCPGCREFLIRELFPTWLM-VLEILNVTLVPYGNAQERN 102

Query:    58 ISKSNNACICKHGPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFN 117
             +S       C+HG  ECLLN+VEAC ++ L+    +   + C+E   ++   ++ + C  
Sbjct:   103 VS-GKWEFTCQHGERECLLNKVEACLLDQLEQKIAFLTIV-CLE--EMDDMEQNLKPCLQ 158

Query:   118 TLG--LPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTA 175
                  + A  +++C     G +LL  +A  T  L PPH  +PWV+VN + ++ D E+   
Sbjct:   159 IYAPKVSADSIMECATGNRGMQLLHINAQLTDALRPPHKYVPWVVVNGEHMK-DAEHLLH 217

Query:   176 YVCRAYKGNVVPNACKL 192
              VCR Y+G   P+ C+L
Sbjct:   218 LVCRLYQGQK-PDVCQL 233

GO:0005764 "lysosome" evidence=ISS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=ISS

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=ISS

GO:0005576 "extracellular region" evidence=IEA

UNIPROTKB|F1MAU3 IFI30 "Gamma-interferon-inducible lysosomal thiol reductase" [Bos taurus (taxid:9913)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 67/197 (34%), Positives = 109/197 (55%)

Query:     3 EASLPAKPGN--VNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDA---N 57
             +AS P KP    VN+S+YYE L P C  F+++ L   +   ++ I+N+ LVP+G+A   N
Sbjct:    45 QAS-PQKPDVPLVNVSLYYEALCPGCREFLIRELFPTWLM-VLEILNVTLVPYGNAQERN 102

Query:    58 ISKSNNACICKHGPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFN 117
             +S       C+HG  ECLLN+VEAC ++ L+    +   + C+E   ++   ++ + C  
Sbjct:   103 VS-GKWEFTCQHGERECLLNKVEACLLDQLEQKIAFLTIV-CLE--EMDDMEQNLKPCLQ 158

Query:   118 TLG--LPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTA 175
                  + A  +++C     G +LL  +A  T  L PPH  +PWV+VN + ++ D E+   
Sbjct:   159 IYAPKVSADSIMECATGNRGMQLLHINAQLTDALRPPHKYVPWVVVNGEHMK-DEEHLLH 217

Query:   176 YVCRAYKGNVVPNACKL 192
              VCR Y+G   P+ C+L
Sbjct:   218 LVCRLYQGQK-PDVCQL 233

GO:0050821 "protein stabilization" evidence=IEA

GO:0048147 "negative regulation of fibroblast proliferation" evidence=IEA

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=IEA

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

UNIPROTKB|F1PK63 IFI30 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 68/196 (34%), Positives = 104/196 (53%)

Query:    13 VNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDA---NISKSNNACICKH 69
             VN+SVYYE L P C  F+V+ L   +   ++ I+N+ LVP+G+A   N+S       C+H
Sbjct:    63 VNVSVYYEALCPGCRAFLVRELFPTWLM-VLEILNVTLVPYGNAHEQNVS-GRWEFTCQH 120

Query:    70 GPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKP--VL 127
             G  EC LN+VEAC  + L   N     I CIE   ++   ++ + C         P  ++
Sbjct:   121 GEQECKLNKVEACLWDKLDK-NLAILIIVCIE--EMDDMEENLKPCMEIYAPTMSPDTIM 177

Query:   128 DCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKGNVVP 187
             +C     G +LL  +A  T  L PPH  +PWV+VN + ++ D     + VC+ Y+G   P
Sbjct:   178 ECAVGDRGMQLLHINAQLTDALQPPHEYVPWVVVNGKPLK-DLSQLLSLVCQLYQGEK-P 235

Query:   188 NACKLPSPGINSAKKV 203
             +AC+L +    S +KV
Sbjct:   236 DACQLTA---TSQRKV 248

GO:0050821 "protein stabilization" evidence=IEA

GO:0048147 "negative regulation of fibroblast proliferation" evidence=IEA

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=IEA

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

RGD|1310758 Ifi30 "interferon gamma inducible protein 30" [Rattus norvegicus (taxid:10116)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 66/195 (33%), Positives = 102/195 (52%)

Query:     1 GSEASLPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDA---N 57
             G    L A P  VN+S+YYE+L   C  F+V+NL   +   ++ I+N+ LVP+G+A   N
Sbjct:    49 GPRRLLSAPP--VNVSLYYESLCGACRYFLVRNLFPTWLM-VMEIMNITLVPYGNAQERN 105

Query:    58 ISKSNNACICKHGPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFN 117
             +S +     C+HG  EC LN+VEAC ++ L+    +   + C+E   +E   K    C  
Sbjct:   106 VSGTWEFT-CQHGELECKLNKVEACLLDKLEKEAAFLTIV-CME--EMEDMEKKLGPCLQ 161

Query:   118 TLGLPAKP--VLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTA 175
                    P  +++C     GT+L+ ++A  T  L PPH  +PWVLVN + +  D     +
Sbjct:   162 LYVPEVSPESIMECATGKRGTELMHENAQLTDALQPPHEYVPWVLVNEKPL-TDPSQLLS 220

Query:   176 YVCRAYKGNVVPNAC 190
              VC  Y+G   P+ C
Sbjct:   221 SVCELYQGTEKPDIC 235

GO:0005576 "extracellular region" evidence=IEA

GO:0005764 "lysosome" evidence=ISO;ISS

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=ISO;ISS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=IEA;ISO

GO:0030054 "cell junction" evidence=IEA;ISO

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=ISO;ISS

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0048147 "negative regulation of fibroblast proliferation" evidence=IEA;ISO

GO:0050821 "protein stabilization" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_VI000837 hypothetical protein (260 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	225
pfam03227	109	pfam03227, GILT, Gamma interferon inducible lysoso	1e-26

>gnl|CDD|217437 pfam03227, GILT, Gamma interferon inducible lysosomal thiol reductase (GILT)

 Score = 98.6 bits (246), Expect = 1e-26
 Identities = 38/90 (42%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 13  VNLSVYYETLSPTCSNFIVKNLEGV-FNNDLISIINLRLVPWGDANISKSNNACICKHGP 71
           VN+++YYE+L P C  FI   L    F+ DL+ I +L+LVP+G A      + C C+HGP
Sbjct: 1   VNITLYYESLCPDCQKFIRNQLYPAWFDLDLLDITDLKLVPFGKARCVDDGSVCTCQHGP 60

Query: 72  DECLLNEVEACAINVLKNVNKYYGFIYCIE 101
           +EC LN ++AC I  L N      FI C++
Sbjct: 61  EECKLNALQACVIETLPNQKLQLPFIRCMQ 90

This family includes the two characterized human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences. It also contains several other eukaryotic putative proteins with similarity to GILT. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction. Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
KOG3160	220	consensus Gamma-interferon inducible lysosomal thi	100.0
PF03227	108	GILT: Gamma interferon inducible lysosomal thiol r	100.0
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	98.51
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	98.23
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	98.11
cd03024	201	DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a D	97.55
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	97.12
PF01323	193	DSBA: DSBA-like thioredoxin domain; InterPro: IPR0	96.74
cd03025	193	DsbA_FrnE_like DsbA family, FrnE-like subfamily; c	96.74
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	96.63
cd03022	192	DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-car	94.71
COG1651	244	DsbG Protein-disulfide isomerase [Posttranslationa	94.13
COG2761	225	FrnE Predicted dithiol-disulfide isomerase involve	94.09
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	88.8
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	86.43
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	82.86
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	80.12

>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.8e-53  Score=364.31  Aligned_cols=174  Identities=39%  Similarity=0.760  Sum_probs=162.7

Q ss_pred             CCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeeeeeecCCCCeeecCChhhhccChhhhhhhhh
Q 043330            7 PAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACAINV   86 (225)
Q Consensus         7 ~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~iqaC~i~~   86 (225)
                      +++.++|+|+||||||||||++||++||.|+|.+.+.+++||+|||||||+..+++++|+||||+.||.+|++|||+|++
T Consensus        35 ~~~~~~v~ItlyyEaLCPdc~~Fi~~qL~p~~~~~~~~~idl~lvPfGna~~~~~~~~~~CqHG~~EC~lN~LqaCvI~~  114 (220)
T KOG3160|consen   35 GSQAPKVNITLYYEALCPDCSKFIRNQLYPFFDNLLPSILDLTLVPFGNAQCRNDGGTFTCQHGEEECKLNKLQACVIDT  114 (220)
T ss_pred             cccCCeeEEEEEEEecCccHHHHHHHHHHHHHhhcccceeEEEEEccCCceeecCceEEEecCCHHHHhhhHHHHHHHHh
Confidence            45667999999999999999999999999999955789999999999999998544899999999999999999999999


Q ss_pred             ccCccchhhhhhhhcchhccCchhhHHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECCeec
Q 043330           87 LKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAI  166 (225)
Q Consensus        87 ~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~  166 (225)
                      +++...+++||.||++.   ...+.+.+|+++.++++..|.+|++|++|.+|+.++|.+|..+.|+|.|||||+|||++.
T Consensus       115 l~~~~~~l~~i~C~~~~---~~~~~~~~C~~~~~~~~~~i~~Ca~s~~g~~L~~~~~~~T~~~~p~~~~VPwi~vNg~~~  191 (220)
T KOG3160|consen  115 LPDQSDQLPFIRCIQGK---QKLSEAEDCLEKYGLNEKKIRECANSRLGAKLLLKYAQETAALAPPHPWVPWILVNGQPL  191 (220)
T ss_pred             hhchHhhhceehhhhcc---cchhHHHHHHhhcCCCHHHHHHHhcCchHHHHHHHHHHhhcccCCCCCCcCeEEECCcch
Confidence            99999999999999983   345567789999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHhhHHHHHHHhhcC
Q 043330          167 RNDYENFTAYVCRAYKG  183 (225)
Q Consensus       167 ~~~~~nl~~~IC~~y~g  183 (225)
                      ++++.||..++|..|++
T Consensus       192 ~~~~~~l~~~~C~~~~~  208 (220)
T KOG3160|consen  192 QDAEQDLVTLLCEAYKG  208 (220)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999999999998

>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]

Probab=100.00  E-value=1.9e-38  Score=246.04  Aligned_cols=106  Identities=42%  Similarity=0.790  Sum_probs=92.8

Q ss_pred             eEEEEEEEeCChhhHHHHHHhhHHHHhh-ccccceEEEEEEEeeeeeecCCCCeeecCChhhhccChhhhhhhhhccCcc
Q 043330           13 VNLSVYYETLSPTCSNFIVKNLEGVFNN-DLISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACAINVLKNVN   91 (225)
Q Consensus        13 V~V~vyyESlCPds~~Fi~~qL~p~~~~-~l~~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~iqaC~i~~~~~~~   91 (225)
                      |+|+||||||||||++||++||.|+|.. ++.++|||+|||||||+....+++|+|||||.||+||++|+|+++++++..
T Consensus         1 V~v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~~~~l~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~~q~C~l~~~~~~~   80 (108)
T PF03227_consen    1 VNVEVYYESLCPDCRRFITNQLFPVWTYEKLSDIMNLTLVPFGNAKVSSSGNEFTCQHGPDECYGNKLQACALKHLPDTN   80 (108)
T ss_pred             CEEEEEEEecCHhHHHHHHHHHHHHHHHhhccceEEEEEEEEeccEEecCCceeecCCcHHHHHcCHHHHhHHHhcCChh
Confidence            7999999999999999999999997732 799999999999999999854446999999999999999999999999888


Q ss_pred             chhhhhhhhcchhccCchhhHHHHHhhcCC
Q 043330           92 KYYGFIYCIEFLAIEGRHKDWQTCFNTLGL  121 (225)
Q Consensus        92 ~~~~fI~C~~~~~~~~~~~~~~~Ca~~~gl  121 (225)
                      .+|+||+||+++.  .....+. |+++++.
T Consensus        81 ~~~~~i~Cm~~~~--~~~~~~~-Ca~~~~~  107 (108)
T PF03227_consen   81 AALPFIACMESSQ--DFPKAIK-CAKKYGI  107 (108)
T ss_pred             hhcCEEEEEcCCC--CCchhhh-hHHhcCC
Confidence            8899999999874  2333343 9999875

It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=98.51  E-value=1.4e-06  Score=68.58  Aligned_cols=148  Identities=11%  Similarity=0.105  Sum_probs=91.8

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeeeeeecCCCCeeecCChhhhccChhhhhhhhhcc
Q 043330            9 KPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACAINVLK   88 (225)
Q Consensus         9 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~iqaC~i~~~~   88 (225)
                      ...+++|.+|+.-.||.|++|. ..|...+. ...+ +.+.++||--...   ...          ..-..-.|+...  
T Consensus         3 ~~a~~~i~~f~D~~Cp~C~~~~-~~l~~~~~-~~~~-~~~~~~~~p~~~~---~~~----------~~~~~~~~~~~~--   64 (154)
T cd03023           3 PNGDVTIVEFFDYNCGYCKKLA-PELEKLLK-EDPD-VRVVFKEFPILGE---SSV----------LAARVALAVWKN--   64 (154)
T ss_pred             CCCCEEEEEEECCCChhHHHhh-HHHHHHHH-HCCC-ceEEEEeCCccCc---chH----------HHHHHHHHHHHh--
Confidence            4578999999999999999995 45666554 3444 6677766631110   000          000111122221  


Q ss_pred             CccchhhhhhhhcchhccCchhhHHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECCeechh
Q 043330           89 NVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRN  168 (225)
Q Consensus        89 ~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~~  168 (225)
                      +....+.|..=+...............+...|++.+.+.+|.++......+.+..+....+  ++..+||++|||+....
T Consensus        65 ~~~~~~~~~~~lf~~~~~~~~~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--gi~gtPt~~v~g~~~~G  142 (154)
T cd03023          65 GPGKYLEFHNALMATRGRLNEESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARAL--GITGTPAFIIGDTVIPG  142 (154)
T ss_pred             ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHc--CCCcCCeEEECCEEecC
Confidence            2234555543332221111223456778999999999999999988888888887777766  58999999999986542


Q ss_pred             --hHhhHHHH
Q 043330          169 --DYENFTAY  176 (225)
Q Consensus       169 --~~~nl~~~  176 (225)
                        ..+.|...
T Consensus       143 ~~~~~~l~~~  152 (154)
T cd03023         143 AVPADTLKEA  152 (154)
T ss_pred             CCCHHHHHHH
Confidence              34445443

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=98.23  E-value=5.3e-06  Score=67.49  Aligned_cols=136  Identities=18%  Similarity=0.110  Sum_probs=89.3

Q ss_pred             CCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeeeeeecCCCCeeecCChhhhccChhhhhhhhhccC
Q 043330           10 PGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACAINVLKN   89 (225)
Q Consensus        10 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~iqaC~i~~~~~   89 (225)
                      ..+|+|..|+.-.||.|.+|- ..+.+++. +..+.+.|+++|+......   +.          ...+..+.+.. .  
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~~~---~~----------~aa~a~~aa~~-~--   75 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFE-PILEAWVK-KLPKDVKFEKVPVVFGGGE---GE----------PLARAFYAAEA-L--   75 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhh-HHHHHHHH-hCCCCceEEEcCCcccccc---ch----------HHHHHHHHHHH-c--
Confidence            679999999999999999995 44777777 4677889999987643211   00          00111111111 1  


Q ss_pred             ccchhhhhhhhcch----hcc-CchhhHHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECCe
Q 043330           90 VNKYYGFIYCIEFL----AIE-GRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQ  164 (225)
Q Consensus        90 ~~~~~~fI~C~~~~----~~~-~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~  164 (225)
                       ...+.|..=+...    ... .....+...+.+.|++.+.+.+|.++.+-...+.+..+....+  ++..+||++|||+
T Consensus        76 -~~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~~~~~~~~~~--gi~gTPt~iInG~  152 (178)
T cd03019          76 -GLEDKLHAALFEAIHEKRKRLLDPDDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLAKKY--KITGVPAFVVNGK  152 (178)
T ss_pred             -CcHhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHc--CCCCCCeEEECCE
Confidence             1122222211111    001 1234578899999999999999999887777777777766665  5799999999998


Q ss_pred             ec
Q 043330          165 AI  166 (225)
Q Consensus       165 ~~  166 (225)
                      ..
T Consensus       153 ~~  154 (178)
T cd03019         153 YV  154 (178)
T ss_pred             EE
Confidence            64

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=98.11  E-value=8.5e-06  Score=65.14  Aligned_cols=149  Identities=13%  Similarity=0.182  Sum_probs=92.1

Q ss_pred             CCCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhcc--ccceEEEEEEEeeeeeecCCCCeeecCChhhhccChhhhhh
Q 043330            6 LPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDL--ISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACA   83 (225)
Q Consensus         6 ~~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l--~~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~iqaC~   83 (225)
                      +.....++.|++|..-.||.|.+|... |.+++. .+  .+.+.|.++|+-...             .....+-.+..|+
T Consensus         7 ~G~~~a~~~v~~f~d~~Cp~C~~~~~~-~~~~~~-~~i~~~~v~~~~~~~~~~~-------------~~~~~a~~~~~~~   71 (162)
T PF13462_consen    7 IGNPDAPITVTEFFDFQCPHCAKFHEE-LEKLLK-KYIDPGKVKFVFRPVPLDK-------------HSSLRAAMAAECV   71 (162)
T ss_dssp             ES-TTTSEEEEEEE-TTSHHHHHHHHH-HHHHHH-HHTTTTTEEEEEEESSSSH-------------HHHHHHHHHHHHH
T ss_pred             ecCCCCCeEEEEEECCCCHhHHHHHHH-Hhhhhh-hccCCCceEEEEEEccccc-------------hhHHHHHHHHHHH
Confidence            456778999999999999999999655 457777 45  568899998872111             1144555566666


Q ss_pred             hhhccCccchhhhhhhhcchhccCch-hhHHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEEC
Q 043330           84 INVLKNVNKYYGFIYCIEFLAIEGRH-KDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVN  162 (225)
Q Consensus        84 i~~~~~~~~~~~fI~C~~~~~~~~~~-~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iN  162 (225)
                      ...  + +.++.+..-+......... ..+.   ...+.+.+.+.+|+.+..-...+....+.+...  ++..+|+|+||
T Consensus        72 ~~~--~-~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~tPt~~in  143 (162)
T PF13462_consen   72 ADQ--G-KYFWFFHELLFSQQENFENKKDIA---ANAGGSNEQFNKCLNSDEIKAQLEADSQLARQL--GITGTPTFFIN  143 (162)
T ss_dssp             HHH--T-HHHHHHHHHHHHHCHSTSSHHHHH---HHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHH--T-SSSSEEEET
T ss_pred             HHH--h-HHHHHHHHHHHHhhhccchhHHHH---HHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHc--CCccccEEEEC
Confidence            554  2 3444455445433211111 1111   233444667889988776666666655555554  58999999999


Q ss_pred             Ceechh--hHhhHHHHH
Q 043330          163 NQAIRN--DYENFTAYV  177 (225)
Q Consensus       163 G~~~~~--~~~nl~~~I  177 (225)
                      |+.+..  ..++|..+|
T Consensus       144 G~~~~~~~~~~~l~~~I  160 (162)
T PF13462_consen  144 GKYVVGPYTIEELKELI  160 (162)
T ss_dssp             TCEEETTTSHHHHHHHH
T ss_pred             CEEeCCCCCHHHHHHHH
Confidence            998643  355665554

...

>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif

Probab=97.55  E-value=0.0011  Score=54.99  Aligned_cols=158  Identities=15%  Similarity=0.138  Sum_probs=96.8

Q ss_pred             EEEEEEeCChhhHHHHHHhhHHHHhhccc--cceEEEEEEEeeeeeecCCCC----eee-cCCh----------------
Q 043330           15 LSVYYETLSPTCSNFIVKNLEGVFNNDLI--SIINLRLVPWGDANISKSNNA----CIC-KHGP----------------   71 (225)
Q Consensus        15 V~vyyESlCPds~~Fi~~qL~p~~~~~l~--~~vdl~lvP~G~a~~~~~~~~----~~C-qHG~----------------   71 (225)
                      |++|+.-.||+|--. ..+|..+.. .+.  +-++|++.||+-.......+.    ... +||.                
T Consensus         1 I~~~~D~~cP~cyl~-~~~l~~~~~-~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~   78 (201)
T cd03024           1 IDIWSDVVCPWCYIG-KRRLEKALA-ELGDEVDVEIEWRPFELNPDMPPEGEDRREYLARKYGSTAEQAAAMRRVEAAAA   78 (201)
T ss_pred             CeEEecCcCccHHHH-HHHHHHHHH-hCCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            579999999999666 355666665 343  259999999974432211110    000 1111                


Q ss_pred             ---------hhhccChhhhhhhhhc-cCccchhhhhhhhcchhc-c----CchhhHHHHHhhcCCCcccccccccCCchh
Q 043330           72 ---------DECLLNEVEACAINVL-KNVNKYYGFIYCIEFLAI-E----GRHKDWQTCFNTLGLPAKPVLDCYKSGNGT  136 (225)
Q Consensus        72 ---------~EC~gN~iqaC~i~~~-~~~~~~~~fI~C~~~~~~-~----~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~  136 (225)
                               ..-..|...+|.+-.. .......+|..=+..... .    .........+...|+|.+.+.++.++.+..
T Consensus        79 ~~gi~~~~~~~~~~~s~~a~~~~~~a~~~~~~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~  158 (201)
T cd03024          79 AEGLEFDFDRVRPPNTFDAHRLIHLAKEQGKQDALVEALFRAYFTEGKDIGDRDVLVDLAEEAGLDAAEARAVLASDEYA  158 (201)
T ss_pred             HcCCcccCCCCccCCcHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCcccc
Confidence                     0011355555543322 122345666665554321 1    123356788999999999999999998888


Q ss_pred             HHHHHHHHhhccCCCCCceeeEEEECCeec-h--hhHhhHHHH
Q 043330          137 KLLLQHAYETSHLIPPHTILPWVLVNNQAI-R--NDYENFTAY  176 (225)
Q Consensus       137 ~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~-~--~~~~nl~~~  176 (225)
                      +.+.+..+.+..+  ++..+||++|||++. .  ...+.|.+.
T Consensus       159 ~~~~~~~~~a~~~--gv~G~Pt~vv~g~~~~~G~~~~~~~~~~  199 (201)
T cd03024         159 DEVRADEARARQL--GISGVPFFVFNGKYAVSGAQPPEVFLQA  199 (201)
T ss_pred             hHHHHHHHHHHHC--CCCcCCEEEECCeEeecCCCCHHHHHHH
Confidence            8888887777665  689999999999753 2  124455544

It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=97.12  E-value=0.0025  Score=54.25  Aligned_cols=139  Identities=13%  Similarity=0.097  Sum_probs=80.7

Q ss_pred             CCceEEEEEEEeCChhhHHHHHHhh--HHHHhhccccceEEEEEEEeeeeeecCC--CCeeecCChhhhccChhhhhhhh
Q 043330           10 PGNVNLSVYYETLSPTCSNFIVKNL--EGVFNNDLISIINLRLVPWGDANISKSN--NACICKHGPDECLLNEVEACAIN   85 (225)
Q Consensus        10 ~~kV~V~vyyESlCPds~~Fi~~qL--~p~~~~~l~~~vdl~lvP~G~a~~~~~~--~~~~CqHG~~EC~gN~iqaC~i~   85 (225)
                      ..++.|.-|+-=.||.|.+|-. .|  .+.|.+.+.+-+.+..+|+--.......  .-+    --.+|.+..      +
T Consensus        36 ~~~~~VvEffdy~CphC~~~~~-~l~~~~~~~~~~~~~v~~~~~~~~f~~~~~~~~~~a~----~~a~~~~~~------~  104 (207)
T PRK10954         36 AGEPQVLEFFSFYCPHCYQFEE-VYHVSDNVKKKLPEGTKMTKYHVEFLGPLGKELTQAW----AVAMALGVE------D  104 (207)
T ss_pred             CCCCeEEEEeCCCCccHHHhcc-cccchHHHHHhCCCCCeEEEecccccchhhHHHHHHH----HHHHHhCcH------H
Confidence            3567899999999999999954 22  3555545565556666554211100000  000    001122110      0


Q ss_pred             hccCccchhhhhhhhcchhccCchhhHHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECCee
Q 043330           86 VLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQA  165 (225)
Q Consensus        86 ~~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~  165 (225)
                      .+  ....+..+  +.... .........-+...|+|.+.+.+|.++..-...+.+..+.+..+  +++-+|+++|||++
T Consensus       105 k~--~~~lf~~i--~~~~~-~~~~~~L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a~~~--gI~gtPtfiInGky  177 (207)
T PRK10954        105 KV--TPPLFEGV--QKTQT-IQSAADIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAAADL--QLRGVPAMFVNGKY  177 (207)
T ss_pred             HH--HHHHHHHH--HccCC-CCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHc--CCCCCCEEEECCEE
Confidence            00  00112222  11111 12234466778889999999999999887777777776666665  58999999999997


Q ss_pred             c
Q 043330          166 I  166 (225)
Q Consensus       166 ~  166 (225)
                      .
T Consensus       178 ~  178 (207)
T PRK10954        178 M  178 (207)
T ss_pred             E
Confidence            4

>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []

Probab=96.74  E-value=0.0029  Score=51.91  Aligned_cols=145  Identities=13%  Similarity=0.057  Sum_probs=82.2

Q ss_pred             EEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeeeeeec-CCC----C--------------------eeec
Q 043330           14 NLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISK-SNN----A--------------------CICK   68 (225)
Q Consensus        14 ~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~-~~~----~--------------------~~Cq   68 (225)
                      +|++|+.-.||+|-.+.. .|..+.. ...+ ++|++.||.-..... .++    .                    +.-.
T Consensus         1 ~i~~~~D~~Cp~cy~~~~-~l~~l~~-~~~~-~~i~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gi~~~   77 (193)
T PF01323_consen    1 TIEFFFDFICPWCYLASP-RLRKLRA-EYPD-VEIEWRPFPLRPDMRRSGGAPPAEDPAKAEYMFQDLERWARRYGIPFN   77 (193)
T ss_dssp             EEEEEEBTTBHHHHHHHH-HHHHHHH-HHTT-CEEEEEEESSSTHHHHCT-SCGCGSHHHHHHHHHHHHHHHHHHT--TB
T ss_pred             CEEEEEeCCCHHHHHHHH-HHHHHHH-HhcC-CcEEEeccccccccccCCCCCcccChhHHHHHHHHHHHHHHHhcCccc
Confidence            589999999999987753 3555555 3334 999999997432210 011    0                    0000


Q ss_pred             CChhhhccChhhhhhhhh-ccCccchhhhhhh-----hcchhccCchhhHHHHHhhcCCCcccccccccCCchhHHHHHH
Q 043330           69 HGPDECLLNEVEACAINV-LKNVNKYYGFIYC-----IEFLAIEGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQH  142 (225)
Q Consensus        69 HG~~EC~gN~iqaC~i~~-~~~~~~~~~fI~C-----~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~  142 (225)
                      ..+.. .+|...+..+-. .........+..=     ......-+..+.....+.+.|+|.+.+.+-.++..++..+.+.
T Consensus        78 ~~~~~-~~~s~~a~~~~~~a~~~~~~~~~~~al~~a~~~~~~~i~~~~vl~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~  156 (193)
T PF01323_consen   78 FPPPF-PGNSRPAHRAAYAAQEQGKADAFADALFRAYFVEGRDISDPDVLAEIAEEAGLDPDEFDAALDSPEVKAALEED  156 (193)
T ss_dssp             TSSTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST-TSSHHHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHH
T ss_pred             CCchh-hhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccCCCCHHHHHHHHHHcCCcHHHHHHHhcchHHHHHHHHH
Confidence            00000 012222222211 1111111122111     1111111223446788999999999999998888888888888


Q ss_pred             HHhhccCCCCCceeeEEEECCe
Q 043330          143 AYETSHLIPPHTILPWVLVNNQ  164 (225)
Q Consensus       143 ~~~T~~l~P~~~~VPwI~iNG~  164 (225)
                      .++...+  ++.-|||++|||+
T Consensus       157 ~~~a~~~--gv~GvP~~vv~g~  176 (193)
T PF01323_consen  157 TAEARQL--GVFGVPTFVVNGK  176 (193)
T ss_dssp             HHHHHHT--TCSSSSEEEETTT
T ss_pred             HHHHHHc--CCcccCEEEECCE
Confidence            8777766  5899999999998

The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....

>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE

Probab=96.74  E-value=0.0077  Score=49.57  Aligned_cols=148  Identities=14%  Similarity=0.106  Sum_probs=90.2

Q ss_pred             eEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeeeeeecCC-------------------CCeeecCChhh
Q 043330           13 VNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSN-------------------NACICKHGPDE   73 (225)
Q Consensus        13 V~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~-------------------~~~~CqHG~~E   73 (225)
                      ++|.+|+.-+||+|-... .+|..+.. .+...++|++.+++-.......                   .+..-..++.+
T Consensus         1 ~~i~~~~D~~cp~c~~~~-~~l~~l~~-~~~~~~~v~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   78 (193)
T cd03025           1 LELYYFIDPLCGWCYGFE-PLLEKLKE-EYGGGIEVELHLGGLLPGNNARQITKQWRIYVHWHKARIALTGQPFGEDYLE   78 (193)
T ss_pred             CeEEEEECCCCchhhCch-HHHHHHHH-HhCCCceEEEEeccccCCCCCCCcchHHHHHHhHHHHHHHhcCCccCchhHh
Confidence            478999999999996553 34555554 4544588888877643322100                   00111111110


Q ss_pred             ---hccChhhhhhhhhc-c--Cccchhhhhhhhcchhc-----cCchhhHHHHHhhcCCCcccccccccCCchhHHHHHH
Q 043330           74 ---CLLNEVEACAINVL-K--NVNKYYGFIYCIEFLAI-----EGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQH  142 (225)
Q Consensus        74 ---C~gN~iqaC~i~~~-~--~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~  142 (225)
                         --.|...++..-.. .  .......|+.-++....     -+........+.+.|+|.+.+.++.++...+..+.+.
T Consensus        79 ~~~~~~~s~~a~~~~~aa~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~l~~ia~~~Gld~~~~~~~~~s~~~~~~l~~~  158 (193)
T cd03025          79 LLLFDLDSAPASRAIKAARLQGPERLLEMLKAIQRAHYVEGRDLADTEVLRELAIELGLDVEEFLEDFQSDEAKQAIQED  158 (193)
T ss_pred             cccCCCCchHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHcChHHHHHHHHH
Confidence               00123333332211 1  12355677766654321     1223356788999999999999999999999999888


Q ss_pred             HHhhccCCCCCceeeEEEECCe
Q 043330          143 AYETSHLIPPHTILPWVLVNNQ  164 (225)
Q Consensus       143 ~~~T~~l~P~~~~VPwI~iNG~  164 (225)
                      -+....+  ++.-+||++|++.
T Consensus       159 ~~~a~~~--gv~g~Ptfvv~~~  178 (193)
T cd03025         159 QKLAREL--GINGFPTLVLEDD  178 (193)
T ss_pred             HHHHHHc--CCCccCEEEEEeC
Confidence            8877776  5799999999765

FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=96.63  E-value=0.0075  Score=50.32  Aligned_cols=143  Identities=15%  Similarity=0.111  Sum_probs=83.5

Q ss_pred             EEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeeeeeecCCC-CeeecCChh--hhccChhhhhhhhh---ccCc
Q 043330           17 VYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNN-ACICKHGPD--ECLLNEVEACAINV---LKNV   90 (225)
Q Consensus        17 vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~-~~~CqHG~~--EC~gN~iqaC~i~~---~~~~   90 (225)
                      +|+--+|+.|-.+ ...|..+.. .+...+++++||.|++......- ...+.+...  +=......+|.--+   +...
T Consensus         2 ~F~dPlc~~C~~~-E~~l~kl~~-~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~la~kAA~~qg~   79 (176)
T PF13743_consen    2 LFVDPLCSWCWGF-EPELRKLKE-EYGNKIEFRFIPGGLMPDINDFMPRMPINGDFWRNEPRSSSYPACLAYKAAQLQGK   79 (176)
T ss_dssp             EEE-TT-HHHHHH-HHHHHHHHH-HS-TTEEEEEEE--SS-S--SB--H----TTHHHS--BS--HHHHHHHHHHHTTT-
T ss_pred             eeeCCCChHHHHh-HHHHHHHHH-HcCCcEEEEEEEccchHHHHHHHHhcCCCHHHhcCCCCCCchHHHHHHHHHHHhCh
Confidence            5777899999777 333455555 68889999999999986642110 111222221  12244556662111   2245


Q ss_pred             cchhhhhhhhcchhcc-----CchhhHHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECC
Q 043330           91 NKYYGFIYCIEFLAIE-----GRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNN  163 (225)
Q Consensus        91 ~~~~~fI~C~~~~~~~-----~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG  163 (225)
                      +++..|+.-|+.....     +..+....||+++|+|.+...+=.+|...++.+.+--+.+..+.  ++-.|+++|-+
T Consensus        80 k~~~~fL~~lQ~a~~~~~~~~s~~~~l~~iA~~~gLD~~~F~~d~~S~~~~~~~~~D~~la~~m~--I~~~Ptlvi~~  155 (176)
T PF13743_consen   80 KKARRFLRALQEALFLEGKNYSDEELLLEIAEELGLDVEMFKEDLHSDEAKQAFQEDQQLAREMG--ITGFPTLVIFN  155 (176)
T ss_dssp             H--HHHHHHHHHHHHTS---TTSHHHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTT---SSSSEEEEE-
T ss_pred             hhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCHHHHHHHHhChHHHHHHHHHHHHHHHcC--CCCCCEEEEEe
Confidence            6778898888765421     22356789999999999887777788888888888888888884  79999999865

>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway

Probab=94.71  E-value=0.057  Score=44.22  Aligned_cols=55  Identities=15%  Similarity=0.058  Sum_probs=46.8

Q ss_pred             hhHHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECCeec
Q 043330          110 KDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAI  166 (225)
Q Consensus       110 ~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~  166 (225)
                      .....++.+.|+|.+.+.++.++.+..+.+.+..+....+  ++.-|||++|||+..
T Consensus       124 ~~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~--gi~gvPtfvv~g~~~  178 (192)
T cd03022         124 AVLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIAR--GVFGVPTFVVDGEMF  178 (192)
T ss_pred             HHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHc--CCCcCCeEEECCeee
Confidence            3467899999999999999999988888888887777665  689999999999864

It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).

>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.13  E-value=0.53  Score=40.39  Aligned_cols=153  Identities=15%  Similarity=0.191  Sum_probs=83.1

Q ss_pred             CCCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeeeeeecCCCCeeecCChhhh-ccChhhhhhh
Q 043330            6 LPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPDEC-LLNEVEACAI   84 (225)
Q Consensus         6 ~~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC-~gN~iqaC~i   84 (225)
                      +.....+|.|.+|++-.||+|.+.+-. |...+.. ..+ +++.+++|--....       |.|    | .+-..-.|+.
T Consensus        79 ~G~~~~~v~v~~f~d~~Cp~C~~~~~~-l~~~~i~-~~~-~~~~~~~~~f~~~~-------~~~----~~~a~~~~~~~~  144 (244)
T COG1651          79 LGNPYAPVTVVEFFDYTCPYCKEAFPE-LKKKYID-DGK-VRLVLREFPFLDPA-------CPY----CRRAAQAARCAA  144 (244)
T ss_pred             ccCCCCCceEEEEecCcCccHHHHHHH-HHHHhhh-cCC-CceEEEEeecCCCC-------cHH----HHHHHHHHHHhc
Confidence            334455999999999999999665433 3333331 222 34444444322221       332    2 1334445554


Q ss_pred             hhccCccchhhhhhhhcchhccCchhhHHHHHhhcC-CC--c--ccccccccCCchhHHHHHHHHhhccCCCCCceeeEE
Q 043330           85 NVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLG-LP--A--KPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWV  159 (225)
Q Consensus        85 ~~~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~g-ld--~--~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI  159 (225)
                      +.-.  ..+|.|..=+.+... .....+..|+.... ..  .  .....|........++.+.-+....+  .+...|++
T Consensus       145 ~~~~--~~y~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~--gv~gTPt~  219 (244)
T COG1651         145 DQGI--VRYWAFHDALFGSQA-EAWAASILCAKDLAKADLAALDEGKKAKLNQKACDALIAKNYKLAQQL--GVNGTPTF  219 (244)
T ss_pred             cccc--hhHHHHHHHHhhccc-cchhhhhhhhhhhhhhhHHHHHhhhhhccChHHHHHHHHHHHHHHHhc--CCCcCCeE
Confidence            4221  357787776665431 22334455655321 11  1  35666665445566666666655555  58999999


Q ss_pred             EECCeechh--hHhhHHHHH
Q 043330          160 LVNNQAIRN--DYENFTAYV  177 (225)
Q Consensus       160 ~iNG~~~~~--~~~nl~~~I  177 (225)
                      +|||..+..  ....|...|
T Consensus       220 ~v~~~~~~g~~~~~~l~~~i  239 (244)
T COG1651         220 IVNGKLVPGLPDLDELKAII  239 (244)
T ss_pred             EECCeeecCCCCHHHHHHHH
Confidence            999985432  234454443

>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.09  E-value=0.21  Score=43.68  Aligned_cols=169  Identities=13%  Similarity=0.136  Sum_probs=100.7

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceE--EEEEEEeeeeeecCCCCeee------c----------CC
Q 043330            9 KPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIIN--LRLVPWGDANISKSNNACIC------K----------HG   70 (225)
Q Consensus         9 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vd--l~lvP~G~a~~~~~~~~~~C------q----------HG   70 (225)
                      ...+|+|+||..=.||.|--. ...|..+.. .+.+.++  +...||--.-..... +..=      .          |.
T Consensus         2 ~~~~i~I~v~sD~vCPwC~ig-~~rL~ka~~-~~~~~~~v~i~w~pf~l~p~~~~~-g~~~~~~l~~k~g~~~~~~~~~~   78 (225)
T COG2761           2 NPMKIEIDVFSDVVCPWCYIG-KRRLEKALA-EYPQEVRVEIRWRPFELDPDLPPE-GLDRKEYLAQKYGISEEQKAAHA   78 (225)
T ss_pred             CCceEEEEEEeCCcCchhhcC-HHHHHHHHH-hcCcceeEEEEecccccCCCCCcc-cccHHHHHHHHhCccHHHHHHHH
Confidence            467899999999999999433 344555555 4554444  444555422111000 0000      0          00


Q ss_pred             -----hhh-----------hccChhhhhhhhhcc-Ccc-chhhhhhhhcchhcc-----CchhhHHHHHhhcCCCccccc
Q 043330           71 -----PDE-----------CLLNEVEACAINVLK-NVN-KYYGFIYCIEFLAIE-----GRHKDWQTCFNTLGLPAKPVL  127 (225)
Q Consensus        71 -----~~E-----------C~gN~iqaC~i~~~~-~~~-~~~~fI~C~~~~~~~-----~~~~~~~~Ca~~~gld~~~I~  127 (225)
                           -.|           =..|.+.||-+.++- ... .+..|+.=+.+....     +..+..-.||.++|+|.+.+.
T Consensus        79 ~~~~~~~~~Gi~~~f~~~~~~~nt~~Ah~l~~~A~~~G~~~~~~~~~lf~AyF~eg~nI~D~dVL~diA~~~GLD~~~~~  158 (225)
T COG2761          79 RLEELAEEEGIDFNFDAIVPAPNTLDAHRLIKAAELQGKAQDRFLEALFEAYFEEGRNIGDEDVLADIAEEVGLDREEFK  158 (225)
T ss_pred             HHHHhhHhcCcccchhhccCCCchHHHHHHHHHHHHhCchHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhCCCHHHHH
Confidence                 111           234556777665542 122 477777777655421     334556799999999998888


Q ss_pred             ccccCCchhHHHHHHHHhhccCCCCCceeeEEEECCeec-h--hhHhhHHHHHHHhhc
Q 043330          128 DCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAI-R--NDYENFTAYVCRAYK  182 (225)
Q Consensus       128 ~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~-~--~~~~nl~~~IC~~y~  182 (225)
                      +=..|+...+=+..-.+.+..+  .++-||+.+|+|.+. .  ...+-|...|=....
T Consensus       159 ~~L~s~~~~~avr~d~~~A~e~--gI~gVP~fv~d~~~~V~Gaq~~~v~~~al~~~~~  214 (225)
T COG2761         159 ADLASDAAKDAVRQDEAAAQEM--GIRGVPTFVFDGKYAVSGAQPYDVLEDALRQLLA  214 (225)
T ss_pred             HHHhChHHHHHHHHHHHHHHHC--CCccCceEEEcCcEeecCCCCHHHHHHHHHHHHh
Confidence            8888877777776666666655  689999999977652 2  123445555544443

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=88.80  E-value=0.97  Score=39.83  Aligned_cols=44  Identities=16%  Similarity=0.212  Sum_probs=34.5

Q ss_pred             CCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEee
Q 043330            8 AKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGD   55 (225)
Q Consensus         8 ~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~   55 (225)
                      +...+..|.||..-.||+|++|-.+ +.+..+  . .-+.++++|++-
T Consensus       114 ~~~ak~~I~vFtDp~CpyC~kl~~~-l~~~~~--~-g~V~v~~ip~~~  157 (251)
T PRK11657        114 KADAPRIVYVFADPNCPYCKQFWQQ-ARPWVD--S-GKVQLRHILVGI  157 (251)
T ss_pred             CCCCCeEEEEEECCCChhHHHHHHH-HHHHhh--c-CceEEEEEeccc
Confidence            4577889999999999999999644 667654  2 348888998864

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=86.43  E-value=1  Score=31.58  Aligned_cols=42  Identities=17%  Similarity=0.256  Sum_probs=32.3

Q ss_pred             EEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeeeee
Q 043330           15 LSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANI   58 (225)
Q Consensus        15 V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~   58 (225)
                      |.+|+--.||.|..+. .+|.++.. ...+-++|.++|+.-...
T Consensus         1 i~~f~d~~Cp~C~~~~-~~l~~~~~-~~~~~~~~~~~~~~~~~~   42 (98)
T cd02972           1 IVEFFDPLCPYCYLFE-PELEKLLY-ADDGGVRVVYRPFPLLGG   42 (98)
T ss_pred             CeEEECCCCHhHHhhh-HHHHHHHh-hcCCcEEEEEeccccCCC
Confidence            5689999999999995 55777654 456779999999875543

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=82.86  E-value=1.7  Score=34.52  Aligned_cols=46  Identities=20%  Similarity=0.220  Sum_probs=26.4

Q ss_pred             CCCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEe
Q 043330            6 LPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWG   54 (225)
Q Consensus         6 ~~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G   54 (225)
                      +++...++++.|+.|+=||||++++ =.|..+.+  ....++|+++.-.
T Consensus        36 l~~~~~~~~ilvi~e~WCgD~~~~v-P~l~kiae--~~p~i~~~~i~rd   81 (129)
T PF14595_consen   36 LKSIQKPYNILVITETWCGDCARNV-PVLAKIAE--ANPNIEVRIILRD   81 (129)
T ss_dssp             HHT--S-EEEEEE--TT-HHHHHHH-HHHHHHHH--H-TTEEEEEE-HH
T ss_pred             HHhcCCCcEEEEEECCCchhHHHHH-HHHHHHHH--hCCCCeEEEEEec
Confidence            3456678999999999999999985 22333333  3446788887654

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=80.12  E-value=3.4  Score=34.47  Aligned_cols=44  Identities=16%  Similarity=0.215  Sum_probs=32.9

Q ss_pred             CCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeee
Q 043330            7 PAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDA   56 (225)
Q Consensus         7 ~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a   56 (225)
                      .....++.|.+|..-.||+|++|.. .|.+     ..+-+.|.++||.-.
T Consensus        73 g~~~~~~~i~~f~D~~Cp~C~~~~~-~l~~-----~~~~v~v~~~~~p~~  116 (197)
T cd03020          73 GKGNGKRVVYVFTDPDCPYCRKLEK-ELKP-----NADGVTVRIFPVPIL  116 (197)
T ss_pred             cCCCCCEEEEEEECCCCccHHHHHH-HHhh-----ccCceEEEEEEcCcC
Confidence            3456789999999999999999953 3444     234578888888643

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	98.6
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.57
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	98.55
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	98.37
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.26
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	98.26
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	98.23
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	98.2
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	98.17
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.16
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	97.96
1z6m_A	175	Conserved hypothetical protein; structural genomic	97.88
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	97.67
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	97.66
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	97.57
2imf_A	203	HCCA isomerase, 2-hydroxychromene-2-carboxylate is	97.52
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	97.5
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	97.5
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	97.25
3gl5_A	239	Putative DSBA oxidoreductase SCO1869; probable DSB	97.1
3fz5_A	202	Possible 2-hydroxychromene-2-carboxylate isomeras;	96.66
1r4w_A	226	Glutathione S-transferase, mitochondrial; glutathi	96.36
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	96.21
3rpp_A	234	Glutathione S-transferase kappa 1; glutathione tra	96.13
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	93.53
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	89.45
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	81.28
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	81.01
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	80.34

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=98.60  E-value=2.5e-07  Score=76.99  Aligned_cols=160  Identities=13%  Similarity=0.162  Sum_probs=109.2

Q ss_pred             CCCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccc--cceEEEEEEEeeeeeecCCCCeeecCChhhhccChhhhhh
Q 043330            6 LPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLI--SIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACA   83 (225)
Q Consensus         6 ~~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~--~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~iqaC~   83 (225)
                      +.....+|.|..|.--.||+|.+|-. .+.|.+.+.+.  +.+.|.++||--             ||+.-=..-..-.|+
T Consensus        24 ~G~~~a~vtvvef~D~~CP~C~~~~~-~~~~~l~~~~~~~g~v~~~~~~~p~-------------~~~~s~~Aa~aa~a~   89 (202)
T 3gha_A           24 LGKDDAPVTVVEFGDYKCPSCKVFNS-DIFPKIQKDFIDKGDVKFSFVNVMF-------------HGKGSRLAALASEEV   89 (202)
T ss_dssp             ESCTTCSEEEEEEECTTCHHHHHHHH-HTHHHHHHHTTTTTSEEEEEEECCC-------------SHHHHHHHHHHHHHH
T ss_pred             ecCCCCCEEEEEEECCCChhHHHHHH-HhhHHHHHHhccCCeEEEEEEecCc-------------cchhHHHHHHHHHHH
Confidence            45677899999999999999999954 46666653343  467788777632             222111111222233


Q ss_pred             hhhccCccchhhhhhhhcchhcc-----CchhhHHHHHhh-cCCCcccccccccCCchhHHHHHHHHhhccCCCCCceee
Q 043330           84 INVLKNVNKYYGFIYCIEFLAIE-----GRHKDWQTCFNT-LGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILP  157 (225)
Q Consensus        84 i~~~~~~~~~~~fI~C~~~~~~~-----~~~~~~~~Ca~~-~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VP  157 (225)
                      ...  +..++++|..=+......     .........+.+ .|+|.+.+.+|.++......+.+..+....+  ++.-+|
T Consensus        90 ~~~--~~~~f~~~~~aLf~~~~~~~~~~~~~~~L~~~a~~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~--gV~gtP  165 (202)
T 3gha_A           90 WKE--DPDSFWDFHEKLFEKQPDTEQEWVTPGLLGDLAKSTTKIKPETLKENLDKETFASQVEKDSDLNQKM--NIQATP  165 (202)
T ss_dssp             HHH--CGGGHHHHHHHHHHHCCSSSSCCCCHHHHHHHHHHHSSSCHHHHHHHHHHTTTHHHHHHHHHHHHHT--TCCSSC
T ss_pred             Hhh--CHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHhcCCCHHHHHHHHhChHHHHHHHHHHHHHHHc--CCCcCC
Confidence            222  456788888877654321     123446678888 9999999999998888777777777766665  589999


Q ss_pred             EEEECCeechh--hHhhHHHHHHHhhcC
Q 043330          158 WVLVNNQAIRN--DYENFTAYVCRAYKG  183 (225)
Q Consensus       158 wI~iNG~~~~~--~~~nl~~~IC~~y~g  183 (225)
                      +++|||+.+..  ..+.|...|=....+
T Consensus       166 tfvvnG~~~~G~~~~e~l~~~i~~~~~~  193 (202)
T 3gha_A          166 TIYVNDKVIKNFADYDEIKETIEKELKG  193 (202)
T ss_dssp             EEEETTEECSCTTCHHHHHHHHHHHHHH
T ss_pred             EEEECCEEecCCCCHHHHHHHHHHHHHh
Confidence            99999998643  467787777666554

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.57  E-value=4.4e-07  Score=72.38  Aligned_cols=151  Identities=14%  Similarity=0.199  Sum_probs=99.7

Q ss_pred             CCCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeeeeeecCCCCeeecCChhhhccChhhhhhhh
Q 043330            6 LPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACAIN   85 (225)
Q Consensus         6 ~~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~iqaC~i~   85 (225)
                      +.....+|.|.+|+-..||+|++|. ..|.+++. +..+ +.|.++++.-.             |+.-=...+.-.|+..
T Consensus        17 ~G~~~a~v~i~~f~d~~Cp~C~~~~-~~l~~l~~-~~~~-v~~~~~~~p~~-------------~~~s~~aa~~~~~a~~   80 (175)
T 3gyk_A           17 LGNPEGDVTVVEFFDYNCPYCRRAM-AEVQGLVD-ADPN-VRLVYREWPIL-------------GEGSDFAARAALAARQ   80 (175)
T ss_dssp             EECTTCSEEEEEEECTTCHHHHHHH-HHHHHHHH-HCTT-EEEEEEECCCS-------------CHHHHHHHHHHHHGGG
T ss_pred             cCCCCCCEEEEEEECCCCccHHHHH-HHHHHHHH-hCCC-EEEEEEeCCCC-------------CCChHHHHHHHHHHHH
Confidence            4567789999999999999999996 44777776 4555 77777776421             1111111222223322


Q ss_pred             hccCccchhhhhhhhcchhccCchhhHHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECCee
Q 043330           86 VLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQA  165 (225)
Q Consensus        86 ~~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~  165 (225)
                          ...++.|..=+...............+++.|+|.+.+.+|.++......+.+..+....+  ++..+||++|||+.
T Consensus        81 ----~~~~~~~~~~lf~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~--gv~gtPt~~i~g~~  154 (175)
T 3gyk_A           81 ----QGKYEAFHWALMGMSGKANETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKL--GFNGTPSFVVEDAL  154 (175)
T ss_dssp             ----GTCHHHHHHHHHTCSSCCSHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHH--TCCSSSEEEETTEE
T ss_pred             ----HhHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHc--CCccCCEEEECCEE
Confidence                134455544333321112234566789999999999999999998888888887777766  58999999999986


Q ss_pred             chh--hHhhHHHHHH
Q 043330          166 IRN--DYENFTAYVC  178 (225)
Q Consensus       166 ~~~--~~~nl~~~IC  178 (225)
                      +..  ..+.|...|=
T Consensus       155 ~~G~~~~~~l~~~i~  169 (175)
T 3gyk_A          155 VPGFVEQSQLQDAVD  169 (175)
T ss_dssp             ECSCCCHHHHHHHHH
T ss_pred             eeCCCCHHHHHHHHH
Confidence            532  3455555553

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=98.55  E-value=6.7e-07  Score=72.36  Aligned_cols=159  Identities=13%  Similarity=0.181  Sum_probs=97.2

Q ss_pred             CCCCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccc--cceEEEEEEEeeeeeecCCCCeeecCChhhhccChhhhh
Q 043330            5 SLPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLI--SIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEAC   82 (225)
Q Consensus         5 ~~~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~--~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~iqaC   82 (225)
                      .+.....+|+|.+|+.-.||+|.+|-. .|.+.+...+.  +.+.|.+.||.-             ||+.-=...+.-.|
T Consensus         5 ~~G~~~a~~~i~~f~D~~Cp~C~~~~~-~l~~~l~~~~~~~~~v~~~~~~~p~-------------~~~~s~~aa~a~~~   70 (186)
T 3bci_A            5 TTSSKNGKPLVVVYGDYKCPYCKELDE-KVMPKLRKNYIDNHKVEYQFVNLAF-------------LGKDSIVGSRASHA   70 (186)
T ss_dssp             ------CCCEEEEEECTTCHHHHHHHH-HHHHHHHHHTTTTTSSEEEEEECCC-------------SCTTHHHHHHHHHH
T ss_pred             CcCCCCCCeEEEEEECCCChhHHHHHH-HHHHHHHHHhccCCeEEEEEEecCc-------------CCcchHHHHHHHHH
Confidence            355667899999999999999999953 35565542343  357888888742             12211112223334


Q ss_pred             hhhhccCccchhhhhhhhcchhcc-----CchhhHHHHHhhcCCCccc---ccccc--cCCchhHHHHHHHHhhccCCCC
Q 043330           83 AINVLKNVNKYYGFIYCIEFLAIE-----GRHKDWQTCFNTLGLPAKP---VLDCY--KSGNGTKLLLQHAYETSHLIPP  152 (225)
Q Consensus        83 ~i~~~~~~~~~~~fI~C~~~~~~~-----~~~~~~~~Ca~~~gld~~~---I~~C~--~s~~G~~Ll~~~~~~T~~l~P~  152 (225)
                      +...  ...+.+.|..=+......     .........+++.|+|.+.   +.+|.  ++......+.+.-+....+  +
T Consensus        71 a~~~--~~~~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~--g  146 (186)
T 3bci_A           71 VLMY--APKSFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAEKDKKIAKDN--H  146 (186)
T ss_dssp             HHHH--CGGGHHHHHHHHHHTCCCTTSCCCCHHHHHHHHHTTCCCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHT--T
T ss_pred             HHHh--CHHHHHHHHHHHHhcCcccCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHc--C
Confidence            4332  123456665545433210     1234566788999999988   99998  8777777777666555555  5


Q ss_pred             CceeeEEEECCeechh--hHhhHHHHHHHhh
Q 043330          153 HTILPWVLVNNQAIRN--DYENFTAYVCRAY  181 (225)
Q Consensus       153 ~~~VPwI~iNG~~~~~--~~~nl~~~IC~~y  181 (225)
                      +..+|+++|||+.+..  ..+.|...|=...
T Consensus       147 v~GtPt~vvnG~~~~G~~~~~~l~~~i~~~~  177 (186)
T 3bci_A          147 IKTTPTAFINGEKVEDPYDYESYEKLLKDKI  177 (186)
T ss_dssp             CCSSSEEEETTEECSCTTCHHHHHHHHHC--
T ss_pred             CCCCCeEEECCEEcCCCCCHHHHHHHHHHHH
Confidence            8999999999997642  3566766665433

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=98.37  E-value=2.5e-06  Score=68.90  Aligned_cols=146  Identities=12%  Similarity=0.096  Sum_probs=93.2

Q ss_pred             CCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeeeeeecCCCCeeecCChhhhccChhhhhhhhhccC
Q 043330           10 PGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACAINVLKN   89 (225)
Q Consensus        10 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~iqaC~i~~~~~   89 (225)
                      ..+|.|.+|+...||+|..|.. .|..+.. +..+.+.|..+|+...             +..+ ...+.-.|+..    
T Consensus        24 ~a~v~i~~f~d~~Cp~C~~~~~-~l~~l~~-~~~~~v~~~~~p~~~~-------------~~s~-~a~~a~~~a~~----   83 (193)
T 2rem_A           24 AGKIEVVEIFGYTCPHCAHFDS-KLQAWGA-RQAKDVRFTLVPAVFG-------------GVWD-PFARAYLAADV----   83 (193)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHH-HHHHHHH-TSCTTEEEEEEECCCS-------------TTHH-HHHHHHHHHHH----
T ss_pred             CCCeEEEEEECCCChhHhhhhH-HHHHHHH-hcCCceEEEEeCcccC-------------CCcH-HHHHHHHHHHH----
Confidence            6789999999999999999964 4666665 4566678888887421             0000 01111222221    


Q ss_pred             ccchhhhhhhhcchhc--------cCchhhHHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEE
Q 043330           90 VNKYYGFIYCIEFLAI--------EGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLV  161 (225)
Q Consensus        90 ~~~~~~fI~C~~~~~~--------~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~i  161 (225)
                      ....+.|..-+.....        ..........+++.|+|.+.+.+|.++......+.+..+....+  ++..+|+++|
T Consensus        84 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~--gv~gtPt~vi  161 (193)
T 2rem_A           84 LGVAKRSHTAMFEAIHEKGSVPIQNVGPDELAVFYAGYGVQPDRFVATFNGPEVEKRFQAARAYALKV--RPVGTPTIVV  161 (193)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCSCSTTCCHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHH--CCSSSSEEEE
T ss_pred             cCcHHHHHHHHHHHHHHhcccCcCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHh--CCCCCCeEEE
Confidence            1234455444433211        01234567788999999999999999888877777776666655  5899999999


Q ss_pred             CCeec-h-hhHhhHHHHH
Q 043330          162 NNQAI-R-NDYENFTAYV  177 (225)
Q Consensus       162 NG~~~-~-~~~~nl~~~I  177 (225)
                      ||+.. . ...+.|...|
T Consensus       162 ng~~~~~g~~~~~l~~~i  179 (193)
T 2rem_A          162 NGRYMVTGHDFEDTLRIT  179 (193)
T ss_dssp             TTTEEECCSSHHHHHHHH
T ss_pred             CCEEEecCCCHHHHHHHH
Confidence            99864 2 1344454444

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.26  E-value=4.3e-06  Score=67.75  Aligned_cols=136  Identities=12%  Similarity=0.037  Sum_probs=90.3

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeeeeeecCCCCeeecCChhhhccChhhhhhhhhcc
Q 043330            9 KPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACAINVLK   88 (225)
Q Consensus         9 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~iqaC~i~~~~   88 (225)
                      ...+|.|..|+-..||+|.+|.. .|..+.. ++.+.+.|..+|...             |+... ...+.-.|+-.   
T Consensus        23 ~~~~~~i~~f~d~~Cp~C~~~~~-~l~~l~~-~~~~~v~~~~~p~~~-------------~~~~~-~aa~a~~aa~~---   83 (192)
T 3h93_A           23 QPGKIEVVELFWYGCPHCYAFEP-TIVPWSE-KLPADVHFVRLPALF-------------GGIWN-VHGQMFLTLES---   83 (192)
T ss_dssp             STTSEEEEEEECTTCHHHHHHHH-HHHHHHH-TCCTTEEEEEEECCC-------------STHHH-HHHHHHHHHHH---
T ss_pred             CCCCCEEEEEECCCChhHHHhhH-HHHHHHH-hCCCCeEEEEEehhh-------------ccchH-HHHHHHHHHHH---
Confidence            46789999999999999999964 3444444 566667777777521             11100 00111222221   


Q ss_pred             Cccchhhhhhhhcchhc-----cCchhhHHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECC
Q 043330           89 NVNKYYGFIYCIEFLAI-----EGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNN  163 (225)
Q Consensus        89 ~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG  163 (225)
                       ..+.++|..=+.....     ..........+...|+|.+.+.+|.++......+.+..+....+  ++..+||++|||
T Consensus        84 -~g~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~--gv~gtPt~~vng  160 (192)
T 3h93_A           84 -MGVEHDVHNAVFEAIHKEHKKLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAY--QVTGVPTMVVNG  160 (192)
T ss_dssp             -HTCCHHHHHHHHHHHHTSCCCCCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHH--TCCSSSEEEETT
T ss_pred             -cCCHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHh--CCCCCCeEEECC
Confidence             2245555555544321     12344567889999999999999999988888888777776665  589999999999


Q ss_pred             eec
Q 043330          164 QAI  166 (225)
Q Consensus       164 ~~~  166 (225)
                      +..
T Consensus       161 ~~~  163 (192)
T 3h93_A          161 KYR  163 (192)
T ss_dssp             TEE
T ss_pred             EEE
Confidence            864

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=98.26  E-value=4e-06  Score=71.15  Aligned_cols=155  Identities=11%  Similarity=0.102  Sum_probs=100.0

Q ss_pred             CCCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhcc--ccceEEEEEEEeeeeeecCCCCeeecCChhhhccChhhhhh
Q 043330            6 LPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDL--ISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACA   83 (225)
Q Consensus         6 ~~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l--~~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~iqaC~   83 (225)
                      +.....+|.|.+|.-=.||+|.+|-.. +.|.+..++  .+.+.|.+.+|-- .             +.--.+-+.-.|+
T Consensus        34 ~G~~~A~vtIvef~Dy~CP~C~~~~~~-~~~~l~~~~~~~g~V~~v~~~~p~-~-------------~~s~~Aa~aa~aa   98 (226)
T 3f4s_A           34 LGDPKAPILMIEYASLTCYHCSLFHRN-VFPKIKEKYIDTGKMLYIFRHFPL-D-------------YRGLKAAMLSHCY   98 (226)
T ss_dssp             ESCTTCSEEEEEEECTTCHHHHHHHHH-THHHHHHHHTTTTSEEEEEEECCC-S-------------HHHHHHHHHGGGC
T ss_pred             cCCCCCCEEEEEEECCCCHHHHHHHHH-HHHHHHHHcccCCeEEEEEEeCCC-C-------------hhHHHHHHHHHHh
Confidence            456778999999999999999999543 455544233  2356666666531 0             1001111222333


Q ss_pred             hhhccCccchhhhhhhhcchhcc------CchhhHHHHHhhcCCCcccccccccCCchhHHHHHHHHhhcc-CCCCCcee
Q 043330           84 INVLKNVNKYYGFIYCIEFLAIE------GRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSH-LIPPHTIL  156 (225)
Q Consensus        84 i~~~~~~~~~~~fI~C~~~~~~~------~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~-l~P~~~~V  156 (225)
                          .+..++|+|..=++.....      .........++..|+|.+.+.+|.++......+.+..+.... +  +++.+
T Consensus        99 ----~~~~~f~~~~~aLF~~q~~~~~~~~~~~~~L~~iA~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~~--GV~Gt  172 (226)
T 3f4s_A           99 ----EKQEDYFNFNKAVFNSIDSWNYYNLSDLTLLQRIAALSNLKQDAFNQCINDKKIMDKIVNDKSLAINKL--GITAV  172 (226)
T ss_dssp             ----CSHHHHHHHHHHHHHTGGGSCSSSTTCCHHHHHHHHHTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHH--CCCSS
T ss_pred             ----hChHHHHHHHHHHHHhCHhhcccccCcHHHHHHHHHHcCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHc--CCCcC
Confidence                2344567776666543210      123456778999999999999999988887777776666655 5  58999


Q ss_pred             eEEEE---CCeechh--h--------HhhHHHHHHHhh
Q 043330          157 PWVLV---NNQAIRN--D--------YENFTAYVCRAY  181 (225)
Q Consensus       157 PwI~i---NG~~~~~--~--------~~nl~~~IC~~y  181 (225)
                      |+++|   ||+.+..  .        ++.|...|=...
T Consensus       173 Ptfvv~~~nG~~~~Ga~~~~~~G~~~~e~l~~~I~~~l  210 (226)
T 3f4s_A          173 PIFFIKLNDDKSYIEHNKVKHGGYKELKYFTNVIDKLY  210 (226)
T ss_dssp             CEEEEEECCTTCCCCGGGGEEESCCCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCEEeeCCCCcccccccCHHHHHHHHHHHH
Confidence            99999   9987532  3        566766664443

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=98.23  E-value=3.6e-06  Score=68.12  Aligned_cols=138  Identities=14%  Similarity=0.038  Sum_probs=90.9

Q ss_pred             CCCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeeeeeecCCCCeeecCChhhhccChhhhhhhh
Q 043330            6 LPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACAIN   85 (225)
Q Consensus         6 ~~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~iqaC~i~   85 (225)
                      ......+|.|.+|+...||+|.+|.. .|..+.. +..+.+.+..+|+..             |+.. -...+.-.|+-.
T Consensus        17 ~g~~~~~~~i~~f~d~~Cp~C~~~~~-~l~~l~~-~~~~~v~~~~~p~~~-------------~~~s-~~aa~a~~aa~~   80 (195)
T 2znm_A           17 PQEQSGKIEVLEFFGYFCVHCHHFDP-LLLKLGK-ALPSDAYLRTEHVVW-------------QPEM-LGLARMAAAVNL   80 (195)
T ss_dssp             CCSSSSSEEEEEEECTTSCCTTSSCH-HHHHHHH-HSCTTEEEEEEECCC-------------SGGG-HHHHHHHHHHHH
T ss_pred             CCCCCCCcEEEEEECCCChhHHHHhH-HHHHHHH-HCCCceEEEEecccc-------------Cccc-HHHHHHHHHHHH
Confidence            34456899999999999999999964 3556555 455567777777521             1111 011122222221


Q ss_pred             hccCccchhhhhhhhcchhc-----cCchhhHHHHHhhc-CCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEE
Q 043330           86 VLKNVNKYYGFIYCIEFLAI-----EGRHKDWQTCFNTL-GLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWV  159 (225)
Q Consensus        86 ~~~~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~-gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI  159 (225)
                          ....+.|..=+.....     ..........+.+. |+|.+.+..|.++......+.+..+....+  ++..+|++
T Consensus        81 ----~~~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~--gv~gtPt~  154 (195)
T 2znm_A           81 ----SGLKYQANPAVFKAVYEQKIRLENRSVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQKLTEQY--RIDSTPTV  154 (195)
T ss_dssp             ----HTCHHHHHHHHHHHHHHCSSCTTSHHHHHHHHHTCSSSCHHHHHHHHTSHHHHHHHHHHHHHHHHT--TCCSSSEE
T ss_pred             ----cCcHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHc--CCCCCCeE
Confidence                2344556555543211     01234566788999 999999999999888888887776666665  58999999


Q ss_pred             EECCee
Q 043330          160 LVNNQA  165 (225)
Q Consensus       160 ~iNG~~  165 (225)
                      +|||+.
T Consensus       155 ving~~  160 (195)
T 2znm_A          155 IVGGKY  160 (195)
T ss_dssp             EETTTE
T ss_pred             EECCEE
Confidence            999985

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=98.20  E-value=6.7e-06  Score=68.79  Aligned_cols=154  Identities=11%  Similarity=0.184  Sum_probs=102.3

Q ss_pred             CCCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhcc--ccceEEEEEEEeeeeeecCCCCeeecCChhhhccChhhhhh
Q 043330            6 LPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDL--ISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACA   83 (225)
Q Consensus         6 ~~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l--~~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~iqaC~   83 (225)
                      +.....+|+|.+|..-.||+|++|. ..+.|.+..++  .+.|.|.+.+|-  .           |+... .+-..-.|+
T Consensus        10 ~G~~~a~vtivef~D~~Cp~C~~~~-~~~~~~l~~~~i~~g~v~~v~r~~p--l-----------~~~s~-~aa~aa~~~   74 (205)
T 3gmf_A           10 LGNPAAKLRLVEFVSYTCPHCSHFE-IESEGQLKIGMVQPGKGAIEVRNFV--R-----------DPIDM-TVALITNCV   74 (205)
T ss_dssp             ESCTTCSEEEEEEECTTCHHHHHHH-HHHHHHHHHHTTTTTSEEEEEEECC--C-----------SHHHH-HHHHHHHHS
T ss_pred             ecCCCCCeEEEEEECCCCHHHHHHH-HHHHHHHHHHhccCCeEEEEEEeCC--C-----------CcchH-HHHHHHHhc
Confidence            4567789999999999999999996 44677776333  456777776662  1           11111 111222343


Q ss_pred             hhhccCccchhhhhhhhcchhcc-------Cch---------------------hhHHHHHhhcCCCcccccccccCCch
Q 043330           84 INVLKNVNKYYGFIYCIEFLAIE-------GRH---------------------KDWQTCFNTLGLPAKPVLDCYKSGNG  135 (225)
Q Consensus        84 i~~~~~~~~~~~fI~C~~~~~~~-------~~~---------------------~~~~~Ca~~~gld~~~I~~C~~s~~G  135 (225)
                           .+.++|+|..=++.....       -..                     ......+...|+|.+.+.+|.++...
T Consensus        75 -----~~~~f~~~~~~Lf~~q~~~~~~~~~~~~~~~~~w~~~~~~~~l~~ia~~~~L~~~a~~~Gld~~~~~~~l~s~~~  149 (205)
T 3gmf_A           75 -----PPSRFFTLHTAFMRSQAQWIGPLANSTEAQRQRWFNGTFATRTRAIASDFRFYDFMAARGMDRSTLDRCLSNEAL  149 (205)
T ss_dssp             -----CHHHHHHHHHHHHHTHHHHCHHHHHCCHHHHHTTSSSCHHHHHHHHHHHTTHHHHHHTTTCCHHHHHHHHTCHHH
T ss_pred             -----CHhHHHHHHHHHHHcCHHHHhcccccchhhhhccccchhHHHHHhccCHHHHHHHHHHcCCCHHHHHHHHcCHHH
Confidence                 356788887777653210       000                     12456778899999999999998877


Q ss_pred             hHHHHHHHHhh-ccCCCCCceeeEEEECCeechh--hHhhHHHHHHHhh
Q 043330          136 TKLLLQHAYET-SHLIPPHTILPWVLVNNQAIRN--DYENFTAYVCRAY  181 (225)
Q Consensus       136 ~~Ll~~~~~~T-~~l~P~~~~VPwI~iNG~~~~~--~~~nl~~~IC~~y  181 (225)
                      ...+.+..+.. ..+  +++-+|+++|||+.+..  .++.|...|=...
T Consensus       150 ~~~v~~~~~~a~~~~--GV~GtPtfvvng~~~~G~~~~e~l~~~i~~~~  196 (205)
T 3gmf_A          150 AKKLAAETDEAINQY--NVSGTPSFMIDGILLAGTHDWASLRPQILARL  196 (205)
T ss_dssp             HHHHHHHHHHHHHHH--CCCSSSEEEETTEECTTCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc--CCccCCEEEECCEEEeCCCCHHHHHHHHHHHh
Confidence            76666666555 555  58999999999998752  4667777765443

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=98.17  E-value=6.5e-06  Score=65.38  Aligned_cols=152  Identities=13%  Similarity=0.098  Sum_probs=89.4

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeeeeeecCCCCeeecCChhhhccChhhhhhhhhcc
Q 043330            9 KPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACAINVLK   88 (225)
Q Consensus         9 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~iqaC~i~~~~   88 (225)
                      ...++.|..|+-=.||+|.+|- ..|.++.. ++.+.+.+.++|+--....            ..=..-+..+|+...- 
T Consensus        19 ~~~~~~vvEf~dy~Cp~C~~~~-~~~~~l~~-~~~~~~~~~~~~~~~~~~~------------~~~~~a~a~~~~~~~~-   83 (184)
T 4dvc_A           19 ASSSPVVSEFFSFYCPHCNTFE-PIIAQLKQ-QLPEGAKFQKNHVSFMGGN------------MGQAMSKAYATMIALE-   83 (184)
T ss_dssp             CCSSCEEEEEECTTCHHHHHHH-HHHHHHHH-TSCTTCEEEEEECSSSSGG------------GHHHHHHHHHHHHHHT-
T ss_pred             CCCCCEEEEEECCCCHhHHHHh-HHHHHHHh-hcCCceEEEEEecCCCCCc------------hHHHHHHHHHHHHHcC-
Confidence            3567788889999999999994 45666666 5666677777665211100            0000011112221111 


Q ss_pred             Cccchhhhh-hh-hcchhccCchhhHHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECCeec
Q 043330           89 NVNKYYGFI-YC-IEFLAIEGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAI  166 (225)
Q Consensus        89 ~~~~~~~fI-~C-~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~  166 (225)
                      ........+ .= ...............=+...|+|.+.+.+|.++..-...+.+..+....+  +++.+|+++|||++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~--gv~gTPtfiINGky~  161 (184)
T 4dvc_A           84 VEDKMVPVMFNRIHTLRKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVHRFDKQFQDS--GLTGVPAVVVNNRYL  161 (184)
T ss_dssp             CHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHH--TCCSSSEEEETTTEE
T ss_pred             cHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHc--CCCcCCEEEECCEEe
Confidence            111111111 10 11111112233455667889999999999999888778777777766665  589999999999853


Q ss_pred             h-----hhHhhHHHHH
Q 043330          167 R-----NDYENFTAYV  177 (225)
Q Consensus       167 ~-----~~~~nl~~~I  177 (225)
                      -     ..+++|..+|
T Consensus       162 v~~~~~~s~e~~~~~i  177 (184)
T 4dvc_A          162 VQGQSAKSLDEYFDLV  177 (184)
T ss_dssp             ECGGGCSSHHHHHHHH
T ss_pred             eCCcCCCCHHHHHHHH
Confidence            1     2356676665

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.16  E-value=2.1e-05  Score=63.76  Aligned_cols=146  Identities=11%  Similarity=0.023  Sum_probs=92.8

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeeeeeecCCCCeeecCChhhhccChhhhhhhhhcc
Q 043330            9 KPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACAINVLK   88 (225)
Q Consensus         9 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~iqaC~i~~~~   88 (225)
                      ...++.|.+|+-..||.|++|. ..|..+.. .+.+.+.|..+|.-..              +.-=...+.-.|+.. . 
T Consensus        23 ~~~~~~vv~f~d~~Cp~C~~~~-~~l~~l~~-~~~~~v~~~~~~~~~~--------------~~s~~aa~a~~aa~~-~-   84 (195)
T 3hd5_A           23 TPGKIEVLEFFAYTCPHCAAIE-PMVEDWAK-TAPQDVVLKQVPIAFN--------------AGMKPLQQLYYTLQA-L-   84 (195)
T ss_dssp             STTCEEEEEEECTTCHHHHHHH-HHHHHHHH-TCCTTEEEEEEECCSS--------------GGGHHHHHHHHHHHH-T-
T ss_pred             CCCCeEEEEEECCCCccHHHhh-HHHHHHHH-HCCCCeEEEEEecccC--------------cchHHHHHHHHHHHh-c-
Confidence            4578999999999999999995 33444444 5666677777775320              000011122222221 1 


Q ss_pred             Cccchhhhhhhhcchhc-----cCchhhHHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECC
Q 043330           89 NVNKYYGFIYCIEFLAI-----EGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNN  163 (225)
Q Consensus        89 ~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG  163 (225)
                        . .++|..=+.....     ..........+++.|+|.+.+.+|.++......+.+..+....+  ++..+|+++|||
T Consensus        85 --g-~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~--gv~gtPt~ving  159 (195)
T 3hd5_A           85 --E-RPDLHPKVFTAIHTERKRLFDKKAMGEWAASQGVDRAKFDSVFDSFSVQTQVQRASQLAEAA--HIDGTPAFAVGG  159 (195)
T ss_dssp             --T-CTTHHHHHHHHHHTSCCCCCSHHHHHHHHHHTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHT--TCCSSSEEEETT
T ss_pred             --C-HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHHHHHHcCHHHHHHHHHHHHHHHHh--CCCcCceEEECC
Confidence              1 2333333322110     02344567789999999999999999988888888887777766  589999999999


Q ss_pred             eechh-----hH-hhHHHHH
Q 043330          164 QAIRN-----DY-ENFTAYV  177 (225)
Q Consensus       164 ~~~~~-----~~-~nl~~~I  177 (225)
                      +....     .. ++|.++|
T Consensus       160 ~~~~~g~~~~~~~e~~~~~i  179 (195)
T 3hd5_A          160 RYMTSPVLAGNDYAGALKVV  179 (195)
T ss_dssp             TEEECTTTTTGGGTTHHHHH
T ss_pred             EEEeCccccCChHHHHHHHH
Confidence            86421     23 5666555

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=97.96  E-value=4.8e-05  Score=62.30  Aligned_cols=147  Identities=15%  Similarity=0.073  Sum_probs=90.1

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeeeeeecCCCCeeecCChhhhccChhhhhhhhhcc
Q 043330            9 KPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACAINVLK   88 (225)
Q Consensus         9 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~iqaC~i~~~~   88 (225)
                      ...+|.|..|+.-.||.|.+|- ..|..+.+ ++.+.+.|..+|...             ||.. =...+.-.|+...- 
T Consensus        22 ~~~~v~vv~f~d~~Cp~C~~~~-~~l~~~~~-~~~~~v~~~~~p~~~-------------~~~~-~~aa~a~~aa~~~g-   84 (193)
T 3hz8_A           22 QAGKVEVLEFFGYFCPHCAHLE-PVLSKHAK-SFKDDMYLRTEHVVW-------------QKEM-LTLARLAAAVDMAA-   84 (193)
T ss_dssp             STTSEEEEEEECTTCHHHHHHH-HHHHHHHT-TCCTTEEEEEEECCC-------------SGGG-HHHHHHHHHHHHHT-
T ss_pred             CCCCcEEEEEECCCChhHHHHH-HHHHHHHH-HCCCCeEEEEecCCC-------------Cccc-HHHHHHHHHHHHcC-
Confidence            4568999999999999999995 33544444 566667777777631             1111 01112222332111 


Q ss_pred             Cccchhh--hhhhhcchh----c-cCchhhHHHHHhhc-CCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEE
Q 043330           89 NVNKYYG--FIYCIEFLA----I-EGRHKDWQTCFNTL-GLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVL  160 (225)
Q Consensus        89 ~~~~~~~--fI~C~~~~~----~-~~~~~~~~~Ca~~~-gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~  160 (225)
                         .++.  |..=+....    . .........-+.+. |+|.+.+.+|.++......+.+..+....+  +++-+|+++
T Consensus        85 ---~~~~~~~~~~lf~a~~~~~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~--gv~gtPt~v  159 (193)
T 3hz8_A           85 ---ADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTAFDGKKVLAAYESPESQARADKMQELTETF--QIDGVPTVI  159 (193)
T ss_dssp             ---GGGHHHHHHHHHHHHHTSCCCTTSHHHHHHHHHHCTTTTHHHHHHHHHSHHHHHHHHHHHHHHHHT--TCCSSSEEE
T ss_pred             ---chhHHhHHHHHHHHHHHhCcCCCCHHHHHHHHHHccCCCHHHHHHHHcCHHHHHHHHHHHHHHHHh--CCCcCCEEE
Confidence               1121  221111110    0 02234566788889 999999999999888888887777776665  589999999


Q ss_pred             ECCeechh--hHhhHHHHH
Q 043330          161 VNNQAIRN--DYENFTAYV  177 (225)
Q Consensus       161 iNG~~~~~--~~~nl~~~I  177 (225)
                      |||+....  ..+.|..+|
T Consensus       160 vng~~~~~~~~~e~l~~~i  178 (193)
T 3hz8_A          160 VGGKYKVEFADWESGMNTI  178 (193)
T ss_dssp             ETTTEEECCSSHHHHHHHH
T ss_pred             ECCEEEecCCCHHHHHHHH
Confidence            99986432  344554444

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=97.88  E-value=8.6e-05  Score=58.97  Aligned_cols=144  Identities=10%  Similarity=0.113  Sum_probs=79.8

Q ss_pred             CCCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhcc--ccceEEEEEEEeeeeeecCCCCeeecCChhhhccChhhhhh
Q 043330            6 LPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDL--ISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACA   83 (225)
Q Consensus         6 ~~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l--~~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~iqaC~   83 (225)
                      +.....+|.|.+|+--.||+|.+|.. .|.+++. ++  .+-+.|.++||.-..     ...    .    .++..+.|+
T Consensus        22 ~G~~~a~v~i~~f~D~~Cp~C~~~~~-~~~~~~~-~~~~~~~v~~~~~~~~~~~-----~~~----~----~a~~~~~~~   86 (175)
T 1z6m_A           22 IGESNAPVKMIEFINVRCPYCRKWFE-ESEELLA-QSVKSGKVERIIKLFDKEK-----ESL----Q----RGNVMHHYI   86 (175)
T ss_dssp             ESCTTCSEEEEEEECTTCHHHHHHHH-HHHHHHH-HHHHTTSEEEEEEECCCCS-----TTT----H----HHHHHHTTC
T ss_pred             cCCCCCCeEEEEEECCCCcchHHHHH-HHHHHHH-HHhhCCcEEEEEEeCCCCc-----ccH----H----HHHHHHHHH
Confidence            34567799999999999999999964 4666665 45  456888888774211     000    0    122233332


Q ss_pred             hhhccCccchhhhhhhhcchhcc---CchhhHHHH-HhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEE
Q 043330           84 INVLKNVNKYYGFIYCIEFLAIE---GRHKDWQTC-FNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWV  159 (225)
Q Consensus        84 i~~~~~~~~~~~fI~C~~~~~~~---~~~~~~~~C-a~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI  159 (225)
                      ..  .+..+++.|..=+......   ........- ++..|+|.+.         ...++.+..+....+  ++..+|++
T Consensus        87 ~~--~~~~~~~~~~~~lf~~~~~~~~~~~~~l~~~a~~~~Gld~~~---------~~~~~~~~~~~a~~~--gv~gtPt~  153 (175)
T 1z6m_A           87 DY--SAPEQALSALHKMFATQDEWGNLTLEEVATYAEKNLGLKEQK---------DATLVSAVIAEANAA--HIQFVPTI  153 (175)
T ss_dssp             CT--TCHHHHHHHHHHHHHTHHHHTTSCHHHHHHHHHHTSCCCCCC---------CHHHHHHHHHHHHHH--TCCSSCEE
T ss_pred             Hh--cChHHHHHHHHHHHHcChhhccCCHHHHHHHHHHhcCCCccc---------CHHHHHHHHHHHHHc--CCCCcCeE
Confidence            11  2334455555544432100   011222233 4568887641         123334443434443  58999999


Q ss_pred             EECCeechh--hHhhHHHHH
Q 043330          160 LVNNQAIRN--DYENFTAYV  177 (225)
Q Consensus       160 ~iNG~~~~~--~~~nl~~~I  177 (225)
                      +|||+.+..  ..+.|...|
T Consensus       154 vvng~~~~G~~~~~~l~~~i  173 (175)
T 1z6m_A          154 IIGEYIFDESVTEEELRGYI  173 (175)
T ss_dssp             EETTEEECTTCCHHHHHHHH
T ss_pred             EECCEEccCCCCHHHHHHHh
Confidence            999987642  345565543

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=97.67  E-value=0.00012  Score=59.68  Aligned_cols=141  Identities=12%  Similarity=0.022  Sum_probs=85.1

Q ss_pred             CCceEEEEEEEeCChhhHHHHHHh-hHHHHhhccccceEEEEEEEeeeeeecCCCCeeecCChhhhccChhhhhhhhhcc
Q 043330           10 PGNVNLSVYYETLSPTCSNFIVKN-LEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACAINVLK   88 (225)
Q Consensus        10 ~~kV~V~vyyESlCPds~~Fi~~q-L~p~~~~~l~~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~iqaC~i~~~~   88 (225)
                      ..++.|..|+--.||.|.+|-... +.+.+...+.+.+.|.++|+--.  .  ..        .+ ..-+.-.|+... .
T Consensus        13 ~~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~--~~--------s~-~aa~a~~aA~~~-g   78 (189)
T 3l9v_A           13 VDAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVSLL--G--PL--------GH-ELTRAWALAMVM-K   78 (189)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECSSS--S--TT--------HH-HHHHHHHHHHHH-T
T ss_pred             CCCCEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEechhc--c--cc--------cH-HHHHHHHHHHHc-C
Confidence            346788899999999999995442 34666545666677777776321  0  00        00 011111233221 1


Q ss_pred             Cccchh-hhhhhhcchhccCchhhHHHHHhhc-CCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECCeec
Q 043330           89 NVNKYY-GFIYCIEFLAIEGRHKDWQTCFNTL-GLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAI  166 (225)
Q Consensus        89 ~~~~~~-~fI~C~~~~~~~~~~~~~~~Ca~~~-gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~  166 (225)
                      ...+.+ .+..=+...............+... |+|.+.+.+|.++......+.+..+....+  ++.-+|+++|||++.
T Consensus        79 ~~~~~~~~lf~a~~~~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~--gv~GtPt~~vng~~~  156 (189)
T 3l9v_A           79 ETDVIEKAFFTAGMVEKRLHSPDDVRRVFMSATGISRGEYDRSIKSPAVNDMVALQERLFKEY--GVRGTPSVYVRGRYH  156 (189)
T ss_dssp             CHHHHHHHHHHHHTTTCCCCSHHHHHHHHHHHHCCCHHHHHHHTTSHHHHHHHHHHHHHHHHT--TCCSSSEEEETTTEE
T ss_pred             cHHHHHHHHHHHHhhhccCCCHHHHHHHHHHccCCCHHHHHHHHhhHHHHHHHHHHHHHHHHh--CCCccCEEEECCEEE
Confidence            111111 1111111110012344567889999 999999999999988888888777766665  589999999999753

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=97.66  E-value=0.00018  Score=58.89  Aligned_cols=165  Identities=12%  Similarity=0.130  Sum_probs=96.9

Q ss_pred             CceEEEEEEEeCChhhHHHHHHhhHHHHhhcccc-ceEEEEEEEeeeeeecCC-------------------CCeeecC-
Q 043330           11 GNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLIS-IINLRLVPWGDANISKSN-------------------NACICKH-   69 (225)
Q Consensus        11 ~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~-~vdl~lvP~G~a~~~~~~-------------------~~~~CqH-   69 (225)
                      ++|+|++|+.-.||.|..  ..++.+.+.. +.+ -++|+++||+-......+                   .++.-.. 
T Consensus         6 ~~~~I~~f~D~~CP~C~~--~~~~~~~l~~-~~~~~v~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~a~~~g~~~~~~   82 (216)
T 2in3_A            6 EKPVLWYIADPMCSWCWG--FAPVIENIRQ-EYSAFLTVKIMPGGLRPGTNTPLLPEKRAQILHHWHSVHITTGQPFTFE   82 (216)
T ss_dssp             CCCEEEEEECTTCHHHHH--HHHHHHHHHH-HHTTTCEEEEEECC----CCSBCCHHHHHHHHHHHHHHHHHHCCCCCCT
T ss_pred             cceeEEEEECCCCchhhc--chHHHHHHHh-cCCCCeEEEEeecccccCCCCCCCHHHHHHHHHHHHHHHHHHCCccChH
Confidence            358999999999999983  3445555552 323 489999998743221100                   0000000 


Q ss_pred             --ChhhhccChhhhhhhhh-ccCc--cchhhhhhhhcchhc-c----CchhhHHHHHhhcCCCcccccccccCCchhHHH
Q 043330           70 --GPDECLLNEVEACAINV-LKNV--NKYYGFIYCIEFLAI-E----GRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLL  139 (225)
Q Consensus        70 --G~~EC~gN~iqaC~i~~-~~~~--~~~~~fI~C~~~~~~-~----~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll  139 (225)
                        -+..=..|...++.+-. ....  .+.++|..=+..... .    .........+++.|+|.+.+.+|.++.+....+
T Consensus        83 ~~~~~~~~~~s~~a~r~~~~a~~~~~~~~~~~~~~lf~a~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v  162 (216)
T 2in3_A           83 NALPEGFIYDTEPACRGVVSVSLIEPEKVFPFFAAIQRAFYVGQEDVAQLAILKKLAVDLGIPESRFTPVFQSDEAKQRT  162 (216)
T ss_dssp             TCSCTTCBCCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHTTCCCTTSHHHHHHHHHHTTCCHHHHHHHHHSHHHHHHH
T ss_pred             HHccCCcccCcHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCHHHHHHHhcchHHHHHH
Confidence              01111234444443211 1111  455666666654221 1    123456788999999999999999988887777


Q ss_pred             HHHHHhhccCCCCCceeeEEEE--CCee---ch--hhHhhHHHHHHHh
Q 043330          140 LQHAYETSHLIPPHTILPWVLV--NNQA---IR--NDYENFTAYVCRA  180 (225)
Q Consensus       140 ~~~~~~T~~l~P~~~~VPwI~i--NG~~---~~--~~~~nl~~~IC~~  180 (225)
                      .+..+....+  ++.-+||++|  ||+.   ..  ...+.|...|=..
T Consensus       163 ~~~~~~a~~~--gv~g~Pt~~i~~~G~~~~~~~G~~~~~~l~~~l~~~  208 (216)
T 2in3_A          163 LAGFQRVAQW--GISGFPALVVESGTDRYLITTGYRPIEALRQLLDTW  208 (216)
T ss_dssp             HHHHHHHHHT--TCCSSSEEEEEETTEEEEEESSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHc--CCcccceEEEEECCEEEEeccCCCCHHHHHHHHHHH
Confidence            7776666665  6899999998  9985   22  2345666655443

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=97.57  E-value=0.00049  Score=56.21  Aligned_cols=147  Identities=10%  Similarity=0.066  Sum_probs=88.9

Q ss_pred             CCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeeeeeecCCCCeeecCChhhhccChhhhhhhhhc--
Q 043330           10 PGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACAINVL--   87 (225)
Q Consensus        10 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~iqaC~i~~~--   87 (225)
                      ..+|+|.+|..=.||+|.+|. ..+.+.+.....+.|.|.+.+|--.           -|....    ....+++...  
T Consensus        13 ~a~vtiv~f~D~~Cp~C~~~~-~~~~~~l~~~~~g~v~~v~r~~p~~-----------~h~~s~----~aaraa~aa~~~   76 (182)
T 3gn3_A           13 HGPRLFEVFLEPTCPFSVKAF-FKLDDLLAQAGEDNVTVRIRLQSQP-----------WHMFSG----VIVRCILAAATL   76 (182)
T ss_dssp             CCSEEEEEEECTTCHHHHHHH-TTHHHHHHHHCTTTEEEEEEECCCT-----------TSTTHH----HHHHHHHHHTTS
T ss_pred             CCCEEEEEEECCCCHhHHHHH-HHHHHHHHHhCCCCEEEEEEEcCCC-----------CCccHH----HHHHHHHHHHHh
Confidence            578999999999999999995 4577777632255677777665311           021110    1112222111  


Q ss_pred             -cCccchhhhhhhhcchhcc--------------CchhhHHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCC
Q 043330           88 -KNVNKYYGFIYCIEFLAIE--------------GRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPP  152 (225)
Q Consensus        88 -~~~~~~~~fI~C~~~~~~~--------------~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~  152 (225)
                       +...++++|..-++.....              +.......-++..|+|.+.+   .++.+-..-+.+..+...++  +
T Consensus        77 ~~~~~~f~~~~~aLf~~q~~~~~~~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~---l~~~~~~~~v~~~~~~a~~~--G  151 (182)
T 3gn3_A           77 EGGKESAKAVMTAVASHREEFEFEHHAGGPNLDATPNDIIARIERYSGLALAEA---FANPELEHAVKWHTKYARQN--G  151 (182)
T ss_dssp             TTHHHHHHHHHHHHHHTGGGGSCBTTTBSGGGGCCHHHHHHHHHHHHTCCCHHH---HHCGGGHHHHHHHHHHHHHH--T
T ss_pred             ccChHHHHHHHHHHHhcCcccccccccccccCCCCHHHHHHHHHHHhCCCHHHH---hcChHHHHHHHHHHHHHHHC--C
Confidence             1114678888777654210              11234567788899998765   45555555555544444444  6


Q ss_pred             CceeeEEEECCeech-----hhHhhHHHHH
Q 043330          153 HTILPWVLVNNQAIR-----NDYENFTAYV  177 (225)
Q Consensus       153 ~~~VPwI~iNG~~~~-----~~~~nl~~~I  177 (225)
                      +.-+|+++|||+.+.     ...+++.+.|
T Consensus       152 V~gtPtf~ing~~~~~~s~~~~~e~w~~~l  181 (182)
T 3gn3_A          152 IHVSPTFMINGLVQPGMSSGDPVSKWVSDI  181 (182)
T ss_dssp             CCSSSEEEETTEECTTCCTTSCHHHHHHHH
T ss_pred             CCccCEEEECCEEccCCCCCCCHHHHHHHh
Confidence            899999999999863     2355665543

>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*

Probab=97.52  E-value=0.00034  Score=57.28  Aligned_cols=159  Identities=10%  Similarity=-0.003  Sum_probs=97.2

Q ss_pred             eEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEe---eeeee--cCCC----------------------Ce
Q 043330           13 VNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWG---DANIS--KSNN----------------------AC   65 (225)
Q Consensus        13 V~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G---~a~~~--~~~~----------------------~~   65 (225)
                      ++|++|+.-.||+|..+. ..|..+.. ...  ++|++.||-   .....  ....                      ++
T Consensus         1 m~I~~~~D~~CP~cy~~~-~~l~~~~~-~~~--~~v~~~p~~L~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~a~~~G~   76 (203)
T 2imf_A            1 MIVDFYFDFLSPFSYLAN-QRLSKLAQ-DYG--LTIRYNAIDLARVKIAIGNVGPSNRDLKVKLDYLKVDLQRWAQLYGI   76 (203)
T ss_dssp             CEEEEEECTTCHHHHHHH-HHHHHHHH-HHC--CEEEEEECCHHHHHHHHTCCSCCGGGCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CeEEEEEeCCCHHHHHHH-HHHHHHHH-HcC--CeEEEEeeecchhhHhhCCCCcccccChHHHHHHHHHHHHHHHHcCC
Confidence            579999999999997773 44555555 232  788888882   11000  0000                      01


Q ss_pred             eecCChhhhccChhhhhhhhhc-cCccchhhhhhhhcchhc-c----CchhhHHHHHhhcCCCcccccccccCCchhHHH
Q 043330           66 ICKHGPDECLLNEVEACAINVL-KNVNKYYGFIYCIEFLAI-E----GRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLL  139 (225)
Q Consensus        66 ~CqHG~~EC~gN~iqaC~i~~~-~~~~~~~~fI~C~~~~~~-~----~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll  139 (225)
                      .-.. +.  ..|...++.+-.. ....+.++|..=+..... .    +........+.+.|+|.+.+.+|.++.+....+
T Consensus        77 ~~~~-~~--~~~t~~a~r~~~~a~~~g~~~~~~~~lf~a~~~~~~~i~~~~~L~~~a~~~Gld~~~~~~~~~s~~~~~~v  153 (203)
T 2imf_A           77 PLVF-PA--NYNSRRMNIGFYYSGAEAQAAAYVNVVFNAVWGEGIAPDLESLPALVSEKLGWDRSAFEHFLSSNAATERY  153 (203)
T ss_dssp             CCCC-CS--CCCCHHHHHHGGGCCSHHHHHHHHHHHHHHHHHSCCCTTCTTHHHHHHHHHTCCHHHHHHHHHSHHHHHHH
T ss_pred             CCCC-CC--CCChHHHHHHHHHHhCcChHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCHHHHHHH
Confidence            1011 11  4555555533222 223345566555544321 1    123456788999999999999999988888888


Q ss_pred             HHHHHhhccCCCCCceeeEEEECCeech--hhHhhHHHHHHHh
Q 043330          140 LQHAYETSHLIPPHTILPWVLVNNQAIR--NDYENFTAYVCRA  180 (225)
Q Consensus       140 ~~~~~~T~~l~P~~~~VPwI~iNG~~~~--~~~~nl~~~IC~~  180 (225)
                      .+..+....+  ++.-+||++|||+...  +.++.|...+-..
T Consensus       154 ~~~~~~a~~~--Gv~G~Ptfvi~g~~~~G~~~~~~l~~~l~~~  194 (203)
T 2imf_A          154 DEQTHAAIER--KVFGVPTMFLGDEMWWGNDRLFMLESAMGRL  194 (203)
T ss_dssp             HHHHHHHHHT--TCCSSSEEEETTEEEESGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHC--CCCcCCEEEECCEEEECCCCHHHHHHHHhcc
Confidence            7776666655  6899999999998653  3455666665543

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=97.50  E-value=0.00025  Score=58.16  Aligned_cols=139  Identities=13%  Similarity=0.062  Sum_probs=84.0

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHh-hHHHHhhccccceEEEEEEEeeeeeecCCC--CeeecCChhhhccC--hhhhhh
Q 043330            9 KPGNVNLSVYYETLSPTCSNFIVKN-LEGVFNNDLISIINLRLVPWGDANISKSNN--ACICKHGPDECLLN--EVEACA   83 (225)
Q Consensus         9 ~~~kV~V~vyyESlCPds~~Fi~~q-L~p~~~~~l~~~vdl~lvP~G~a~~~~~~~--~~~CqHG~~EC~gN--~iqaC~   83 (225)
                      ...+|.|..|+--.||.|.+|-... ..|.|...+.+-+.|.++|+--........  .+.    -.+|.|.  +.+.=+
T Consensus        19 ~~~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~v~~~~~~~~~~~~~s~~aa~a~~----aA~~~g~~~~~~~~l   94 (191)
T 3l9s_A           19 VAGEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHVEFLGPLGKELTQAWA----VAMALGVEDKVTVPL   94 (191)
T ss_dssp             CCSSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTTCCEEEEECSSSSTTHHHHHHHHH----HHHHHTCHHHHHHHH
T ss_pred             CCCCCeEEEEECCCChhHHHhChhccchHHHHHhCCCCcEEEEEecccccccCHHHHHHHH----HHHHcCcHHHHHHHH
Confidence            3458899999999999999995331 135555456666777777763210000000  000    0122221  111101


Q ss_pred             hhhccCccchhhhhhhhcchhccCchhhHHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECC
Q 043330           84 INVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNN  163 (225)
Q Consensus        84 i~~~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG  163 (225)
                      .+.            =+.... .........-+...|+|.+.+.+|.++......+.+..+...++  ++.-+|+++|||
T Consensus        95 f~a------------~~~~~~-~~~~~~L~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~--gv~gtPtfvvnG  159 (191)
T 3l9s_A           95 FEA------------VQKTQT-VQSAADIRKVFVDAGVKGEDYDAAWNSFVVKSLVAQQEKAAADL--QLQGVPAMFVNG  159 (191)
T ss_dssp             HHH------------HHTSCC-CSSHHHHHHHHHHTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHT--TCCSSSEEEETT
T ss_pred             HHH------------HHhcCC-CCCHHHHHHHHHHcCCCHHHHHHHHhCHHHHHHHHHHHHHHHHh--CCcccCEEEECC
Confidence            110            011111 12344567789999999999999999988888888777777665  589999999999


Q ss_pred             eec
Q 043330          164 QAI  166 (225)
Q Consensus       164 ~~~  166 (225)
                      ++.
T Consensus       160 ~~~  162 (191)
T 3l9s_A          160 KYQ  162 (191)
T ss_dssp             TEE
T ss_pred             EEE
Confidence            863

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=97.50  E-value=0.00014  Score=58.29  Aligned_cols=66  Identities=12%  Similarity=0.104  Sum_probs=48.2

Q ss_pred             hhHHHH----HhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECCeec-h----hhHhhHHHHH
Q 043330          110 KDWQTC----FNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAI-R----NDYENFTAYV  177 (225)
Q Consensus       110 ~~~~~C----a~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~-~----~~~~nl~~~I  177 (225)
                      ......    +++.|+|.+.+.+|.++......+.+..+....+  ++..+||++|||+.. .    ...+.|...|
T Consensus       115 ~~l~~~~~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~--gv~gtPt~~ing~~~~~~~g~~~~~~l~~~i  189 (195)
T 3c7m_A          115 KDPAAFIKTGLDAAGMSQADFEAALKEPAVQETLEKWKASYDVA--KIQGVPAYVVNGKYLIYTKSIKSIDAMADLI  189 (195)
T ss_dssp             TCHHHHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHGGGHHHHH--HHHCSSEEEETTTEEECGGGCCCHHHHHHHH
T ss_pred             HHHHHHHHhHHHHcCCCHHHHHHHHcChHHHHHHHHHHHHHHHc--CCCccCEEEECCEEEeccCCCCCHHHHHHHH
Confidence            356678    8899999999999999887777776665554444  579999999999852 2    1345666554

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=97.25  E-value=0.002  Score=52.82  Aligned_cols=165  Identities=10%  Similarity=0.057  Sum_probs=97.5

Q ss_pred             eEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeeeeeecCC-C------------------CeeecCChh-
Q 043330           13 VNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSN-N------------------ACICKHGPD-   72 (225)
Q Consensus        13 V~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~-~------------------~~~CqHG~~-   72 (225)
                      ++|++|+.-.||.|-.+ ...|..+.. .+.+-++|+++||+-......+ +                  ++.-...+. 
T Consensus         3 ~~I~~~~D~~CP~cy~~-~~~l~~l~~-~~~~~v~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~r~a~~~G~~f~~~~~~   80 (208)
T 3kzq_A            3 IKLYYVHDPMCSWCWGY-KPTIEKLKQ-QLPGVIQFEYVVGGLAPDTNLPMPPEMQQKLEGIWKQIETQLGTKFNYDFWK   80 (208)
T ss_dssp             EEEEEEECTTCHHHHHH-HHHHHHHHH-HSCTTSEEEEEECCSSCSCCCBCCHHHHHHHHHHHHHHHHHHCCCCCTTHHH
T ss_pred             eEEEEEECCCCchhhhh-hHHHHHHHH-hCCCCceEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHHCCcccHHHHh
Confidence            68999999999999755 344555555 4667799999998742211000 0                  000111000 


Q ss_pred             --hhccChhhhhhhhh-ccCccchhhhhhhhcchhc-----cCchhhHHHHHhhcCCCcccccccccCCchhHHHHHHHH
Q 043330           73 --ECLLNEVEACAINV-LKNVNKYYGFIYCIEFLAI-----EGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAY  144 (225)
Q Consensus        73 --EC~gN~iqaC~i~~-~~~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~  144 (225)
                        .=..|...++-+-. .......++|..=+.....     ..........+.+.|+|.+.+.+|.++......+.+..+
T Consensus        81 ~~~~~~~s~~a~r~~~aa~~~g~~~~~~~~l~~a~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~  160 (208)
T 3kzq_A           81 LCTPVRSTYQSCRAVIAAGFQDSYEQMLEAIQHAYYLRAMPPHEEATHLQLAKEIGLNVQQFKNDMDGTLLEGVFQDQLS  160 (208)
T ss_dssp             HSCCBCCCHHHHHHHHHHHTTTCHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHTTCCHHHHHHHHTSHHHHHHHHHHHH
T ss_pred             cCCCcCCcHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHH
Confidence              00124334432211 1122234555555543221     122345678899999999999999999888888888777


Q ss_pred             hhccCCCCCceeeEEEEC--Ceech-----hhHhhHHHHHHHhh
Q 043330          145 ETSHLIPPHTILPWVLVN--NQAIR-----NDYENFTAYVCRAY  181 (225)
Q Consensus       145 ~T~~l~P~~~~VPwI~iN--G~~~~-----~~~~nl~~~IC~~y  181 (225)
                      ....+  ++.-+||++||  |+...     ...+.|.+.|=...
T Consensus       161 ~a~~~--gv~g~Pt~~v~~~~~~~~~~~g~~~~e~~~~~i~~~~  202 (208)
T 3kzq_A          161 LAKSL--GVNSYPSLVLQINDAYFPIEVDYLSTEPTLKLIRERI  202 (208)
T ss_dssp             HHHHT--TCCSSSEEEEEETTEEEEECCCSSCSHHHHHHHHHHH
T ss_pred             HHHHc--CCCcccEEEEEECCEEEEeeCCCCCHHHHHHHHHHHH
Confidence            77765  68999999996  44321     23455665554443

>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}

Probab=97.10  E-value=0.0032  Score=53.39  Aligned_cols=167  Identities=10%  Similarity=0.064  Sum_probs=104.3

Q ss_pred             ceEEEEEEEeCChhhHHHHHHhhHHHHhhccc--cceEEEEEEEeeeeeecCCC--------------------------
Q 043330           12 NVNLSVYYETLSPTCSNFIVKNLEGVFNNDLI--SIINLRLVPWGDANISKSNN--------------------------   63 (225)
Q Consensus        12 kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~--~~vdl~lvP~G~a~~~~~~~--------------------------   63 (225)
                      |++|++|+.-.||.|--. ...|..+.. .+.  .-++|++.||.-.-.....+                          
T Consensus         2 ~~~I~~~~D~~cPwcyig-~~~l~~a~~-~~~~~~~v~v~~~P~~L~p~~~~~g~~~~~~~~~~k~g~~~~~~~~~~~~~   79 (239)
T 3gl5_A            2 HMRVEIWSDIACPWCYVG-KARFEKALA-AFPHRDGVEVVHRSFELDPGRAKDDVQPVLTMLTAKYGMSQEQAQAGEDNL   79 (239)
T ss_dssp             CEEEEEEECSSCHHHHHH-HHHHHHHHH-TCTTGGGEEEEEEECCSCTTCCTTCCEEHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             CeEEEEEEeCcCHhHHHH-HHHHHHHHH-hcCccCceEEEEEEeccccCCCCCCCCCHHHHHHHhhCCCHHHHHHHHHHH
Confidence            689999999999999544 344666655 343  46999999995211100000                          


Q ss_pred             -------CeeecCChhhhccChhhhhhhhhc-cCccchhhhhhhhcchhc-----cCc-hhhHHHHHhhcCCCccccccc
Q 043330           64 -------ACICKHGPDECLLNEVEACAINVL-KNVNKYYGFIYCIEFLAI-----EGR-HKDWQTCFNTLGLPAKPVLDC  129 (225)
Q Consensus        64 -------~~~CqHG~~EC~gN~iqaC~i~~~-~~~~~~~~fI~C~~~~~~-----~~~-~~~~~~Ca~~~gld~~~I~~C  129 (225)
                             ++.=...+ -=..|...++-+-.. ....+.+.|+.=+.....     -+. .......+.+.|+|.+.+.++
T Consensus        80 ~r~a~~~Gl~f~~~~-~~~~nt~~a~r~~~~A~~~g~~~~~~~alf~a~~~~g~~i~d~~~~L~~~a~~~Gld~~~~~~~  158 (239)
T 3gl5_A           80 GAQAAAEGLAYRTRD-RDHGSTFDLHRLLHLAKERGRHEALLDAFYRGNFADERSVFNDDERLVELAVGAGLDAEEVRAV  158 (239)
T ss_dssp             HHHHHHTTCCCCCSS-CEECCCHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCSSCCSSCHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHcCCCccCCC-CCCCChHHHHHHHHHHHhhCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCHHHHHHH
Confidence                   11111110 012455555533221 222345555555543321     123 455778899999999999999


Q ss_pred             ccC-CchhHHHHHHHHhhccCCCCCceeeEEEECCee-ch--hhHhhHHHHHHHhhcC
Q 043330          130 YKS-GNGTKLLLQHAYETSHLIPPHTILPWVLVNNQA-IR--NDYENFTAYVCRAYKG  183 (225)
Q Consensus       130 ~~s-~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~-~~--~~~~nl~~~IC~~y~g  183 (225)
                      .++ ......+.+..+....+  ++.-|||++|||++ +.  ...+.|...|=.....
T Consensus       159 l~s~~~~~~~v~~~~~~a~~~--Gv~GvPtfvv~g~~~v~Ga~~~e~~~~~i~~~~~~  214 (239)
T 3gl5_A          159 LADPAAYADEVRADEREAAQL--GATGVPFFVLDRAYGVSGAQPAEVFTQALTQAWGE  214 (239)
T ss_dssp             HHCTTTTHHHHHHHHHHHHHT--TCCSSSEEEETTTEEEESSCCHHHHHHHHHHHHHT
T ss_pred             HcCcHhHHHHHHHHHHHHHHC--CCCeeCeEEECCcEeecCCCCHHHHHHHHHHHHhh
Confidence            999 88888888777776665  58999999999974 32  2466777777666654

>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2}

Probab=96.66  E-value=0.0039  Score=51.06  Aligned_cols=160  Identities=11%  Similarity=0.066  Sum_probs=96.3

Q ss_pred             CceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEE--eeeeeec--C-C--------------------CCe
Q 043330           11 GNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPW--GDANISK--S-N--------------------NAC   65 (225)
Q Consensus        11 ~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~--G~a~~~~--~-~--------------------~~~   65 (225)
                      .+++|++|+.-.||.|--. ...|..+.. ..  -++|++.||  |......  . .                    .++
T Consensus         3 ~~~~I~~~~D~~cPwcyi~-~~~l~~~~~-~~--~~~v~~~p~~L~~~~~~~g~~~~~~~~~k~~~~~~~~~r~a~~~G~   78 (202)
T 3fz5_A            3 AMNPIEFWFDFSSGYAFFA-AQRIEALAA-EL--GRTVLWRPYMLGAAFSVTGARGLSSTPLKRDYAQRDWARIARQRGL   78 (202)
T ss_dssp             CCSCEEEEECTTCHHHHHH-HTTHHHHHH-HH--TCCEEEEECTTC----------CCSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCceeEEEEeCCCHHHHHH-HHHHHHHHH-Hh--CCeEEEEeeeccchhhhcCCCCcccCcHHHHHHHHHHHHHHHHhCC
Confidence            4678999999999999544 344555544 22  378999998  3211100  0 0                    011


Q ss_pred             eecCChhhhccChhhhhhhhhc-cCc--cchhhhhhhhcchhc-----cCchhhHHHHHhhcCCCcccccccccCCchhH
Q 043330           66 ICKHGPDECLLNEVEACAINVL-KNV--NKYYGFIYCIEFLAI-----EGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTK  137 (225)
Q Consensus        66 ~CqHG~~EC~gN~iqaC~i~~~-~~~--~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~  137 (225)
                      .-.. +.-=..|...++-+-.. ...  .+..+|+.=+.....     .+........+.+.|+|.+.+.++.++.+...
T Consensus        79 ~f~~-~~~~~~~t~~a~r~~~~a~~~g~~~~~~~~~alf~a~~~~g~~i~~~~~L~~~a~~~Gld~~~~~~~~~s~~~~~  157 (202)
T 3fz5_A           79 TFRP-PADHPHVALAATRAFYWIEAQSPDAATAFAQRVFDLYFSDRLDTASPEAVSRLGPEVGLEPEALLAGIADPALKE  157 (202)
T ss_dssp             CCCC-CTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCCCTTCHHHHHTTHHHHTCCHHHHHHHTTCHHHHH
T ss_pred             CCCC-CCCCCCChHHHHHHHHHHHhhCchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCHHHHH
Confidence            1111 11112355555532221 111  245556555544321     12234567889999999999999999999888


Q ss_pred             HHHHHHHhhccCCCCCceeeEEEECCeech--hhHhhHHHHH
Q 043330          138 LLLQHAYETSHLIPPHTILPWVLVNNQAIR--NDYENFTAYV  177 (225)
Q Consensus       138 Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~--~~~~nl~~~I  177 (225)
                      .+.+..++...+  ++.-|||++|||+...  +.++.|...+
T Consensus       158 ~v~~~~~~a~~~--Gv~GvPtfvv~g~~~~G~~~~~~l~~~l  197 (202)
T 3fz5_A          158 TVRKIGEDAVAR--GIFGSPFFLVDDEPFWGWDRMEMMAEWI  197 (202)
T ss_dssp             HHHHHHHHHHHT--TCCSSSEEEETTEEEESGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHC--CCCcCCEEEECCEEEecCCCHHHHHHHH
Confidence            888887777766  6899999999998653  3455555554

>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13

Probab=96.36  E-value=0.013  Score=48.57  Aligned_cols=76  Identities=12%  Similarity=0.131  Sum_probs=55.0

Q ss_pred             hhhHHHHHhhcCCCc---ccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEEC----Ceech--hhHhhHHHHHHH
Q 043330          109 HKDWQTCFNTLGLPA---KPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVN----NQAIR--NDYENFTAYVCR  179 (225)
Q Consensus       109 ~~~~~~Ca~~~gld~---~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iN----G~~~~--~~~~nl~~~IC~  179 (225)
                      .......+.+.|+|.   +.+.+|.++.+....+.+..+....+  ++.-|||++||    |+...  +.++.|...+=.
T Consensus       135 ~~~L~~~a~~~Gl~~~d~~~~~~~~~s~~~~~~v~~~~~~a~~~--gv~G~Ptfvv~~~g~~~~~~G~~~~~~l~~~l~~  212 (226)
T 1r4w_A          135 SQNILSAAEKAGMATAQAQHLLNKISTELVKSKLRETTGAACKY--GAFGLPTTVAHVDGKTYMLFGSDRMELLAYLLGE  212 (226)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHTTTTSHHHHHHHHHHHHHHHHT--TCCSSCEEEEEETTEEEEEESTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHHcCCCchhHHHHHHHcCCHHHHHHHHHHHHHHHHC--CCCCCCEEEEeCCCCcCceeCCCcHHHHHHHhcC
Confidence            345678899999964   47778888888888887777766665  68999999999    76542  335666666666


Q ss_pred             hhcCCCCC
Q 043330          180 AYKGNVVP  187 (225)
Q Consensus       180 ~y~g~~~P  187 (225)
                      .+.| +.|
T Consensus       213 ~~~~-~~~  219 (226)
T 1r4w_A          213 KWMG-PVP  219 (226)
T ss_dssp             CCCC-SSC
T ss_pred             cccC-CCC
Confidence            6666 444

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=96.21  E-value=0.011  Score=47.78  Aligned_cols=145  Identities=10%  Similarity=0.067  Sum_probs=81.2

Q ss_pred             CceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeeeeeecCCCCeeecCChhhhccChhhhhhhhhccCc
Q 043330           11 GNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACAINVLKNV   90 (225)
Q Consensus        11 ~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~iqaC~i~~~~~~   90 (225)
                      +++.|..|+--.||.|.+|- . ..+-|..++ + +.|..+|...             |+..+ ..-+.-..+-.... .
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~-~-~~~~~~~~~-~-v~~~~~p~~~-------------~~~~~-~aa~a~~Aa~~q~g-~   82 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNME-N-FLPVISQEA-G-TDIGKMHITF-------------NQSAH-IASMFYYAAEMQVD-G   82 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHG-G-GHHHHHHHH-T-SCCEEEECCS-------------SSHHH-HHHHHHHHHHTTSS-S
T ss_pred             CCCEEEEEECCCChhHHHhh-H-HHHHHHHHh-C-CeEEEEeccC-------------Cccch-HHHHHHHHHHHHhC-C
Confidence            67899999999999999993 3 333333234 3 5566666421             11111 00011111111111 0


Q ss_pred             cchhhhhhhhcchhcc-------CchhhHHHHHhhcCC-CcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEEC
Q 043330           91 NKYYGFIYCIEFLAIE-------GRHKDWQTCFNTLGL-PAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVN  162 (225)
Q Consensus        91 ~~~~~fI~C~~~~~~~-------~~~~~~~~Ca~~~gl-d~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iN  162 (225)
                      ...++|..=+......       .........+.+.|+ |.+.+.++..+ .....+.+..+....+  +++.+|+++||
T Consensus        83 ~~~~~~~~~lf~a~~~~~~~~~~~~~~~L~~~a~~~Gl~d~~~~~~~~~~-~~~~~v~~~~~~a~~~--gv~GtPtfvvn  159 (185)
T 3feu_A           83 APDHAFMEDLFAATQMGEGTTLTEQQEAYSKAFTSRGLVSPYDFNEEQRD-TLIKKVDNAKMLSEKS--GISSVPTFVVN  159 (185)
T ss_dssp             SCCHHHHHHHHHHHTCCTTSCHHHHHHHHHHHHHTTTCCCGGGCCHHHHH-HHHHHHHHHHHHHHHH--TCCSSSEEEET
T ss_pred             chHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHc--CCCccCEEEEC
Confidence            0123343333322110       123346678999998 99999999876 4455555565555555  58999999999


Q ss_pred             Ceec---h--hhHhhHHHHH
Q 043330          163 NQAI---R--NDYENFTAYV  177 (225)
Q Consensus       163 G~~~---~--~~~~nl~~~I  177 (225)
                      |++.   .  ...+.|..+|
T Consensus       160 g~~~v~~~Ga~~~e~~~~~i  179 (185)
T 3feu_A          160 GKYNVLIGGHDDPKQIADTI  179 (185)
T ss_dssp             TTEEECGGGCSSHHHHHHHH
T ss_pred             CEEEEecCCCCCHHHHHHHH
Confidence            9863   1  2355666555

>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A*

Probab=96.13  E-value=0.042  Score=46.13  Aligned_cols=170  Identities=14%  Similarity=0.054  Sum_probs=95.3

Q ss_pred             CceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEE--eeeeee---cCCC--------------------Ce
Q 043330           11 GNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPW--GDANIS---KSNN--------------------AC   65 (225)
Q Consensus        11 ~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~--G~a~~~---~~~~--------------------~~   65 (225)
                      .+++|++|+.-.||.|--.. ..|..+.. .+  -++|++.||  |.....   ....                    ++
T Consensus         4 ~~~~I~~~~D~~CPwcyi~~-~~L~~~~~-~~--~v~v~~~p~~L~~~~~~~g~~~~~~~~~k~~y~~~~~~r~a~~~G~   79 (234)
T 3rpp_A            4 LPRTVELFYDVLSPYSWLGF-EILCRYQN-IW--NINLQLRPSLITGIMKDSGNKPPGLLPRKGLYMANDLKLLRHHLQI   79 (234)
T ss_dssp             CCEEEEEEECTTCHHHHHHH-HHHHHHTT-TS--SEEEEEEECCHHHHCC----CCCSSSCHHHHHHHHHHHHHHHHHTC
T ss_pred             CCceEEEEEeCCCHHHHHHH-HHHHHHHH-Hc--CCeEEEEEeecchhhhhcCCCCcccChHHHHHHHHHHHHHHHHhCC
Confidence            56899999999999995442 33443333 22  388999998  311000   0000                    11


Q ss_pred             eecCCh--h--hhccChhhhhhhhhc-c--Cccchhhhhhhhcchhc-----cCchhhHHHHHhhcCCCc---ccccccc
Q 043330           66 ICKHGP--D--ECLLNEVEACAINVL-K--NVNKYYGFIYCIEFLAI-----EGRHKDWQTCFNTLGLPA---KPVLDCY  130 (225)
Q Consensus        66 ~CqHG~--~--EC~gN~iqaC~i~~~-~--~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~gld~---~~I~~C~  130 (225)
                      .-...+  .  .-..|.+.++-+-.. .  ...+...|+.=+.....     -+........+.+.|+|.   +.+.+-.
T Consensus        80 ~f~~~~~~~~~~~~~nt~~a~r~~~aa~~~~~~~~~~~~~al~~A~~~~g~di~d~~~L~~~a~~~GLd~~~~~~~l~~~  159 (234)
T 3rpp_A           80 PIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRELWMRVWSRNEDITEPQSILAAAEKAGMSAEQAQGLLEKI  159 (234)
T ss_dssp             CCCCCSSCHHHHHHHCSHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHTTCCHHHHHHHHTTT
T ss_pred             CCCCCCCCcccccCCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence            111100  0  001144444432211 1  12334455444432211     123456778999999999   4555556


Q ss_pred             cCCchhHHHHHHHHhhccCCCCCceeeEEEEC--Ce-e-c--hhhHhhHHHHHHHhhcCCCCC
Q 043330          131 KSGNGTKLLLQHAYETSHLIPPHTILPWVLVN--NQ-A-I--RNDYENFTAYVCRAYKGNVVP  187 (225)
Q Consensus       131 ~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iN--G~-~-~--~~~~~nl~~~IC~~y~g~~~P  187 (225)
                      ++.+..+.+.+..++..++  ++.-|||++||  |+ . .  .+.+..|...+=..+.| +.|
T Consensus       160 ~s~~~~~~l~~~~~~a~~~--Gv~GvPtfvv~~~g~~~~f~G~drl~~l~~~L~~~~~~-p~~  219 (234)
T 3rpp_A          160 ATPKVKNQLKETTEAACRY--GAFGLPITVAHVDGQTHMLFGSDRMELLAHLLGEKWMG-PIP  219 (234)
T ss_dssp             TSHHHHHHHHHHHHHHHHT--TCSSSCEEEEEETTEEEEEESSSCHHHHHHHHTCCCCC-SSC
T ss_pred             cCHHHHHHHHHHHHHHHHc--CCCCCCEEEEeCCCCcCceeCccCHHHHHHHhccccCC-CCC
Confidence            7888888888887777766  68999999995  74 2 2  23466666666556666 555

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=93.53  E-value=0.042  Score=45.12  Aligned_cols=56  Identities=16%  Similarity=0.162  Sum_probs=46.7

Q ss_pred             hhhHHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECCeec
Q 043330          109 HKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAI  166 (225)
Q Consensus       109 ~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~  166 (225)
                      .......+...|+|.+.+.+|.++......+.+.......+  +++.||+++|||++.
T Consensus         6 ~~~L~~~a~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~--gi~gvP~fvingk~~   61 (197)
T 1un2_A            6 ASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADV--QLRGVPAMFVNGKYQ   61 (197)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHHHHHHHHT--TCCSSSEEEETTTEE
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHhCHHHHHHHHHHHHHHHHc--CCCcCCEEEEcceEe
Confidence            44566789999999999999999998888888777766665  578899999999864

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=89.45  E-value=0.49  Score=39.55  Aligned_cols=44  Identities=20%  Similarity=0.342  Sum_probs=34.1

Q ss_pred             CCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEe
Q 043330            7 PAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWG   54 (225)
Q Consensus         7 ~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G   54 (225)
                      .....++.|.+|+--.||+|++|.. +|.+.++ .  +.+.|.++||.
T Consensus        93 G~~~ak~~v~~F~D~~Cp~C~~~~~-~l~~~~~-~--g~v~v~~~~~p  136 (241)
T 1v58_A           93 GKKDAPVIVYVFADPFCPYCKQFWQ-QARPWVD-S--GKVQLRTLLVG  136 (241)
T ss_dssp             SCTTCSEEEEEEECTTCHHHHHHHH-HHHHHHH-T--TSEEEEEEECC
T ss_pred             CCCCCCeEEEEEECCCChhHHHHHH-HHHHHHh-C--CcEEEEEEECC
Confidence            3456789999999999999999964 4677665 2  35778888874

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=81.28  E-value=2.2  Score=33.16  Aligned_cols=40  Identities=13%  Similarity=0.303  Sum_probs=28.3

Q ss_pred             CCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEe
Q 043330            8 AKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWG   54 (225)
Q Consensus         8 ~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G   54 (225)
                      ....++.|.+|..-.||+|++|..     .+. ++.+ +.|.++.|.
T Consensus        11 ~~~a~~~vv~f~D~~Cp~C~~~~~-----~l~-~l~~-v~v~~~~~P   50 (147)
T 3gv1_A           11 RGNGKLKVAVFSDPDCPFCKRLEH-----EFE-KMTD-VTVYSFMMP   50 (147)
T ss_dssp             ETTCCEEEEEEECTTCHHHHHHHH-----HHT-TCCS-EEEEEEECC
T ss_pred             cCCCCEEEEEEECCCChhHHHHHH-----HHh-hcCc-eEEEEEEcc
Confidence            356789999999999999999843     344 4533 566655544

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=81.01  E-value=1.5  Score=38.11  Aligned_cols=40  Identities=18%  Similarity=0.363  Sum_probs=32.0

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEe
Q 043330            9 KPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWG   54 (225)
Q Consensus         9 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G   54 (225)
                      ...+..|.+|..-.||+|+++. .+|.+.++ +    ++|++++|+
T Consensus       145 ~~gk~~I~vFtDp~CPYCkkl~-~~l~~~l~-~----~~Vr~i~~P  184 (273)
T 3tdg_A          145 ANKDKILYIVSDPMCPHCQKEL-TKLRDHLK-E----NTVRMVVVG  184 (273)
T ss_dssp             GGTTCEEEEEECTTCHHHHHHH-HTHHHHHH-H----CEEEEEECC
T ss_pred             CCCCeEEEEEECcCChhHHHHH-HHHHHHhh-C----CcEEEEEee
Confidence            3577899999999999999995 45777665 2    778888876

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=80.34  E-value=3.3  Score=30.49  Aligned_cols=47  Identities=13%  Similarity=0.157  Sum_probs=32.9

Q ss_pred             CCCCCCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEE
Q 043330            3 EASLPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVP   52 (225)
Q Consensus         3 ~~~~~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP   52 (225)
                      .-+++.-..|+.|-.|+-+-||.|+..+ ..|..+++ ++.+. ++++|-
T Consensus        24 ~~~l~~~~gk~vll~F~a~wC~~C~~~~-~~l~~l~~-~~~~~-~~~vv~   70 (143)
T 4fo5_A           24 KASFHNQLGRYTLLNFWAAYDAESRARN-VQLANEVN-KFGPD-KIAMCS   70 (143)
T ss_dssp             CCCSCCSSCCEEEEEEECTTCHHHHHHH-HHHHHHHT-TSCTT-TEEEEE
T ss_pred             EEEHHHhCCCEEEEEEEcCcCHHHHHHH-HHHHHHHH-HhCcC-CEEEEE
Confidence            3456666678889999999999999886 34666666 45543 455553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	225
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	98.27
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	97.74
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	97.54
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	96.21
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	95.91
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	94.4
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	86.98
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	84.0

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=98.27  E-value=1.8e-06  Score=66.72  Aligned_cols=154  Identities=13%  Similarity=0.095  Sum_probs=92.6

Q ss_pred             CCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeeeeeecCCCCeeecCChhhhccChhhhhhhhhc
Q 043330            8 AKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACAINVL   87 (225)
Q Consensus         8 ~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~iqaC~i~~~   87 (225)
                      +...++.|..|.--.||.|++|- ..+.+++. ++.+.+.+.++|+-.....        .+    =...+..+|+...-
T Consensus        15 p~~~~~~Ivef~d~~Cp~C~~~~-~~~~~l~~-~~~~~~~~~~~~~~~~~~~--------~~----~~~~~~~~~~~~~~   80 (181)
T d1beda_          15 PASSSPVVSEFFSFYCPHCNTFE-PIIAQLKQ-QLPEGAKFQKNHVSFMGGN--------MG----QAMSKAYATMIALE   80 (181)
T ss_dssp             CCCSSCEEEEEECTTCHHHHHHH-HHHHHHHH-TSCTTCEEEEEECSSSSGG--------GH----HHHHHHHHHHHHTT
T ss_pred             CCCCCCEEEEEECCCCccchhhh-hhhhhHhh-hcccccceeEEeccccccc--------cH----HHHHHHHHHHHHhc
Confidence            44677889899999999999994 55777777 5666666666655221110        00    01112222222110


Q ss_pred             cCccchhhhhhhhcch-hccCchhhHHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECCeec
Q 043330           88 KNVNKYYGFIYCIEFL-AIEGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAI  166 (225)
Q Consensus        88 ~~~~~~~~fI~C~~~~-~~~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~  166 (225)
                      .....+..+..=+... ...........-+...|+|.+.+.+|.++.+-.+.+.+..+....+  +++.+|+++|||+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gvd~~~~~~~~~~~~~~~~v~~~~~~~~~~--gi~gTPt~~InGk~~  158 (181)
T d1beda_          81 VEDKMVPVMFNRIHTLRKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDS--GLTGVPAVVVNNRYL  158 (181)
T ss_dssp             CHHHHHHHHHHHHTTSCCCCCSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHH--TCCSSSEEEETTTEE
T ss_pred             chhhHHHHHHHHHHHhccccchHHHHHHHHHHhcCCHHHHHHHHhChHHHHHHHHHHHHHHHh--CCccccEEEECCEEe
Confidence            0001111111111111 1112344566778899999999999999999999988888777766  589999999999864


Q ss_pred             h-----hhHhhHHHHH
Q 043330          167 R-----NDYENFTAYV  177 (225)
Q Consensus       167 ~-----~~~~nl~~~I  177 (225)
                      .     ..++.|..+|
T Consensus       159 v~~~~~~~~~~l~~~i  174 (181)
T d1beda_         159 VQGQSVKSLDEYFDLV  174 (181)
T ss_dssp             ECGGGCCSHHHHHHHH
T ss_pred             eCCCCCCCHHHHHHHH
Confidence            2     1345555544

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.74  E-value=3.5e-05  Score=58.93  Aligned_cols=148  Identities=9%  Similarity=0.075  Sum_probs=75.5

Q ss_pred             CCCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhcccc--ceEEEEEEEeeeeeecCCCCeeecCChhhhccChhhhhh
Q 043330            6 LPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLIS--IINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACA   83 (225)
Q Consensus         6 ~~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~--~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~iqaC~   83 (225)
                      +.....+|.|..|..-.||+|.+|- ..+.++.. +..+  .+.+.++|+.....   ..           ..-..-+|+
T Consensus        19 ~G~~~a~v~I~ef~d~~Cp~C~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~-----------~~a~~~~~~   82 (172)
T d1z6ma1          19 IGESNAPVKMIEFINVRCPYCRKWF-EESEELLA-QSVKSGKVERIIKLFDKEKE---SL-----------QRGNVMHHY   82 (172)
T ss_dssp             ESCTTCSEEEEEEECTTCHHHHHHH-HHHHHHHH-HHHHTTSEEEEEEECCCCST---TT-----------HHHHHHHTT
T ss_pred             ecCCCCCEEEEEEECCCCHhHHHHH-HHHhhhhh-hhccccceeeeeccccccch---hh-----------HHHHHHHHH
Confidence            4456778999999999999999995 33666655 3433  34445555432111   10           011222222


Q ss_pred             hhhccCccchhhhhhhhcchhccCchhhHHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECC
Q 043330           84 INVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNN  163 (225)
Q Consensus        84 i~~~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG  163 (225)
                      ...- ...+++.|+.=+..............=++..     ....|.++..-..++.+.-+....+  +++.+||++|||
T Consensus        83 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~a~~~--gI~gTPt~~Ing  154 (172)
T d1z6ma1          83 IDYS-APEQALSALHKMFATQDEWGNLTLEEVATYA-----EKNLGLKEQKDATLVSAVIAEANAA--HIQFVPTIIIGE  154 (172)
T ss_dssp             CCTT-CHHHHHHHHHHHHHTHHHHTTSCHHHHHHHH-----HHTSCCCCCCCHHHHHHHHHHHHHH--TCCSSCEEEETT
T ss_pred             HHHc-cchhHHHHHHHHHHhccccchHHHHHHHHHH-----HhhhhhhhHHHHHHHHHHHHHHHHc--CCCcCCEEEECC
Confidence            2221 1223333332221111000000010101111     2334666666666666666666555  589999999999


Q ss_pred             eechh--hHhhHHHHH
Q 043330          164 QAIRN--DYENFTAYV  177 (225)
Q Consensus       164 ~~~~~--~~~nl~~~I  177 (225)
                      +.+..  ..+.|..+|
T Consensus       155 ~~~~g~~~~~~~~~~i  170 (172)
T d1z6ma1         155 YIFDESVTEEELRGYI  170 (172)
T ss_dssp             EEECTTCCHHHHHHHH
T ss_pred             EEecCCCCHHHHHHHH
Confidence            97643  345555543

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=6.4e-05  Score=58.24  Aligned_cols=143  Identities=13%  Similarity=0.078  Sum_probs=81.7

Q ss_pred             CCCCceEEEEEEEeCChhhHHHHHHhhHHHHh--hccccceEEEEEEEeeeeeecCCCCeeecCChhhhccChhhhhhhh
Q 043330            8 AKPGNVNLSVYYETLSPTCSNFIVKNLEGVFN--NDLISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACAIN   85 (225)
Q Consensus         8 ~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~--~~l~~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~iqaC~i~   85 (225)
                      +...++.|.-|+---||.|++|- ..|.+...  ....+.+.+..+|+.......   ...         .-..-+|+..
T Consensus        15 p~~~~~~VvEffdy~Cp~C~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---------~a~~~~~~~~   81 (188)
T d1fvka_          15 PVAGAPQVLEFFSFFCPHCYQFE-EVLHISDNVKKKLPEGVKMTKYHVNFMGGDL---GKD---------LTQAWAVAMA   81 (188)
T ss_dssp             CCTTCCSEEEEECTTCHHHHHHH-HTTCHHHHHHTTSCTTCCEEEEECSSSSHHH---HHH---------HHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCChhhHHHH-HHHHHHHHHhhccCCceEEEEEecCcCCChh---HHH---------HHHHHHHHHH
Confidence            34556778888899999999995 33544332  234566777777764221110   000         0001111111


Q ss_pred             hccCccchhhhhhhhcchhccCchhhHHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECCee
Q 043330           86 VLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQA  165 (225)
Q Consensus        86 ~~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~  165 (225)
                      .-........+..=+..............=+...|+|.+.+.+|.++++=.+++.++.+....+  +++-+||++|||++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~v~~~~~~a~~~--gI~gTPt~vInGky  159 (188)
T d1fvka_          82 LGVEDKVTVPLFEGVQKTQTIRSASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADV--QLRGVPAMFVNGKY  159 (188)
T ss_dssp             HTCHHHHHHHHHHHHHTSCCCCSHHHHHHHHHHTTCCHHHHHHHHHCHHHHHHHHHHHHHHHHT--TCCSSSEEEETTTE
T ss_pred             HhhhhhHHHHHHHHhhhhcccchHHHHHHHHHHccCCHHHHHhhhccHHHHHHHHHHHHHHHHc--CCccccEEEECCEE
Confidence            0000000111111111111112233445556778999999999999988888888888877766  69999999999975

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.21  E-value=0.013  Score=44.85  Aligned_cols=45  Identities=20%  Similarity=0.316  Sum_probs=36.4

Q ss_pred             CCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEee
Q 043330            7 PAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGD   55 (225)
Q Consensus         7 ~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~   55 (225)
                      .....++.|.+|..-.||+|++|.. +|.+.+++   ..+.+.++||+-
T Consensus        32 G~~~a~~tv~vF~D~~CP~C~~~~~-~l~~l~~~---~~v~v~~~~~~~   76 (169)
T d1v58a1          32 GKKDAPVIVYVFADPFCPYCKQFWQ-QARPWVDS---GKVQLRTLLVGV   76 (169)
T ss_dssp             SCTTCSEEEEEEECTTCHHHHHHHH-HHHHHHHT---TSEEEEEEECCC
T ss_pred             CCCCCCEEEEEEECCCCcchHHHHH-HHHHHHhc---cceeEEEEeccc
Confidence            4677889999999999999999974 47777652   358889999864

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.91  E-value=0.007  Score=45.69  Aligned_cols=44  Identities=18%  Similarity=0.295  Sum_probs=33.4

Q ss_pred             CCCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEe
Q 043330            6 LPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWG   54 (225)
Q Consensus         6 ~~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G   54 (225)
                      +.+...|+.|.+|..=.||+|++|- .+|.++.+    ..+++.+++|.
T Consensus        21 ~g~~~ak~~I~~FsD~~CPyC~~~~-~~l~~l~~----~~~~v~~~~~~   64 (150)
T d1t3ba1          21 YPAKNEKHVVTVFMDITCHYCHLLH-QQLKEYND----LGITVRYLAFP   64 (150)
T ss_dssp             ECCTTCSEEEEEEECTTCHHHHHHH-TTHHHHHH----TTEEEEEEECC
T ss_pred             ECCCCCCEEEEEEECCCCHHHHHHh-HHHHHHhc----cCceEEEEEec
Confidence            4567889999999999999999984 44665554    24677777764

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=94.40  E-value=0.0075  Score=47.86  Aligned_cols=54  Identities=17%  Similarity=0.172  Sum_probs=46.8

Q ss_pred             hHHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECCeec
Q 043330          111 DWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAI  166 (225)
Q Consensus       111 ~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~  166 (225)
                      .+..=+.+.|+|.+....|.+|..-...+.+.-+.+..+  +++.||+++|||++.
T Consensus         8 ~i~~~~~~~Gld~~~f~~~~~s~~~~~~v~~~~~~a~~~--gi~GtPtfiVnGky~   61 (195)
T d1un2a_           8 DIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADV--QLRGVPAMFVNGKYQ   61 (195)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHHHHHHHHT--TCCSSSEEEETTTEE
T ss_pred             HHHHHHHHcCCCHHHHHHHHcCHHHHHHHHHHHHHHHHh--CCCcCCEEEECCeee
Confidence            455557889999999999999999999999888888877  589999999999864

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.98  E-value=0.24  Score=36.82  Aligned_cols=43  Identities=12%  Similarity=0.214  Sum_probs=30.3

Q ss_pred             CCCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEE
Q 043330            6 LPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPW   53 (225)
Q Consensus         6 ~~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~   53 (225)
                      +.+...|+.|.+|..-.||+|++|. ..|.++.+    +.+.+.++.|
T Consensus        21 ~g~~~ak~tIv~FsD~~CpyC~~~~-~~l~~~~~----~~~~~~~~~~   63 (156)
T d1eeja1          21 YKAPQEKHVITVFTDITCGYCHKLH-EQMADYNA----LGITVRYLAF   63 (156)
T ss_dssp             ECCTTCCEEEEEEECTTCHHHHHHH-TTHHHHHH----TTEEEEEEEC
T ss_pred             ecCCCCCEEEEEEeCCCCHHHHHHH-HHHHHhhc----cCceEEEEec
Confidence            4567889999999999999999984 33444433    3455555554

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=84.00  E-value=0.63  Score=33.63  Aligned_cols=52  Identities=19%  Similarity=0.298  Sum_probs=37.8

Q ss_pred             CCCCCCCCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEe
Q 043330            1 GSEASLPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWG   54 (225)
Q Consensus         1 ~~~~~~~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G   54 (225)
                      |++-+++.-..|+-|--|+-+-||.|+.++-. |..+++ ++.+-.+|+++...
T Consensus        18 ~~~v~l~~~~GK~vvl~FwatwC~~C~~~~p~-l~~l~~-~~~~~~~~~vi~is   69 (144)
T d1o73a_          18 SGEVSLGSLVGKTVFLYFSASWCPPCRGFTPV-LAEFYE-KHHVAKNFEVVLIS   69 (144)
T ss_dssp             TSCBCSGGGTTCEEEEEEECTTCHHHHHHHHH-HHHHHH-HHTTTTTEEEEEEE
T ss_pred             CCEEeHHHhCCCEEEEEeChhhCccchhhhHH-HHHHHH-HHhhccCeEEEEEe
Confidence            34556777778998889999999999999744 677776 45444567776553